format-version: 1.2
data-version: 2012-08-16
subsetdef: cyclostome_subset "cyclostome structures"
subsetdef: defined_by_ordinal_series "classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology"
subsetdef: developmental_classification "developmental_classification"
subsetdef: disjointness_axiom_removed "A class which has a weakened disjointness axiom, to avoid inconsistency. These are kept separately in the uberon_disjoint_from_strict ontology."
subsetdef: dubious_grouping "Indicates that subclasses in AOs may be inappropriately linked"
subsetdef: early_development "A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes."
subsetdef: emapa_ehdaa2 "derived from the union of EHDAA2 and EMAPA - still to be checked"
subsetdef: functional_classification "functional_classification"
subsetdef: grouping_class "Subset consisting of classes creating for grouping purposes"
subsetdef: inconsistent_with_fma "classes that have some inconsistency with FMA"
subsetdef: inherited_grouping_class "A grouping class that originates in two or more separate anatomical ontologies. Includes 'region of X' type terms"
subsetdef: loose_concept "loose concept"
subsetdef: major_organ "somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads"
subsetdef: metazoa_core "core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out"
subsetdef: organ_slim "organs, excluding individual muscles and skeletal elements"
subsetdef: phenotype_rcn "A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA"
subsetdef: uberon_slim "Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms"
subsetdef: unverified_taxonomic_grouping "Indicates that the class encompasses classes from other AOs that have not been verified"
subsetdef: upper_level "abstract upper-level terms not directly useful for analysis"
subsetdef: upper_ontology_conflict "Terms in this subset group together terms from different anatomy ontologies that have conflicting upper ontology/CARO assignments. For example, in FMA the naris is immaterial and in ZFA it is an organism subdivision."
subsetdef: vertebrate_core "core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO"
synonymtypedef: ATTRIBUTION_REQUIRED "expert consultation and attribution required"
synonymtypedef: DEPRECATED "A historic synonym, no longer encouraged"
synonymtypedef: DEVELOPMENTAL "developmental term"
synonymtypedef: DUBIOUS "dubious or contested synonym"
synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species"
synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens"
synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species"
synonymtypedef: LATIN "latin term"
synonymtypedef: PLURAL "plural term"
synonymtypedef: SENSU "taxonomic disambiguation"
default-namespace: uberon
idspace: foaf http://xmlns.com/foaf/0.1
idspace: NIF_GrossAnatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#
idspace: Wikipedia http://en.wikipedia.org/wiki/
treat-xrefs-as-equivalent: BILA
treat-xrefs-as-equivalent: BSPO
treat-xrefs-as-equivalent: CARO
treat-xrefs-as-equivalent: GO
treat-xrefs-as-equivalent: NIF_GrossAnatomy
treat-xrefs-as-equivalent: OG
treat-xrefs-as-equivalent: VSAO
treat-xrefs-as-is_a: VHOG
remark: Uberon is an anatomical ontology covering metazoa. For more details, see http://uberon.org or http://genomebiology.com/2012/13/1/R5
ontology: uberon
treat-xrefs-as-reverse-genus-differentia: AAO part_of NCBITaxon:8292
treat-xrefs-as-reverse-genus-differentia: FBbt part_of NCBITaxon:7227
treat-xrefs-as-reverse-genus-differentia: FMA part_of NCBITaxon:9606
treat-xrefs-as-reverse-genus-differentia: HAO part_of NCBITaxon:7399
treat-xrefs-as-reverse-genus-differentia: MA part_of NCBITaxon:10088
treat-xrefs-as-reverse-genus-differentia: MFO part_of NCBITaxon:8089
treat-xrefs-as-reverse-genus-differentia: SPD part_of NCBITaxon:6893
treat-xrefs-as-reverse-genus-differentia: TADS part_of NCBITaxon:6939
treat-xrefs-as-reverse-genus-differentia: TAO part_of NCBITaxon:32443
treat-xrefs-as-reverse-genus-differentia: TGMA part_of NCBITaxon:44484
treat-xrefs-as-reverse-genus-differentia: WBbt part_of NCBITaxon:6237
treat-xrefs-as-reverse-genus-differentia: XAO part_of NCBITaxon:8353
treat-xrefs-as-reverse-genus-differentia: ZFA part_of NCBITaxon:7954
treat-xrefs-as-has-subclass: EHDAA
treat-xrefs-as-has-subclass: EHDAA2
treat-xrefs-as-has-subclass: EMAPA
treat-xrefs-as-has-subclass: EV
treat-xrefs-as-has-subclass: ncithesaurus
treat-xrefs-as-has-subclass: OGES
[Term]
id: UBERON:0000000
name: processual entity
def: "An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity." [span:ProcessualEntity]
subset: upper_level
disjoint_from: UBERON:0001062 ! anatomical entity
[Term]
id: UBERON:0000002
name: uterine cervix
def: "Lower, narrow portion of the uterus where it joins with the top end of the vagina." [Wikipedia:Cervix]
subset: uberon_slim
synonym: "canalis cervicis uteri" EXACT [FMA:17740, FMA:TA]
synonym: "cervical canal" EXACT []
synonym: "cervical canal of uterus" EXACT []
synonym: "cervix" EXACT []
synonym: "cervix of uterus" EXACT []
synonym: "cervix uteri" EXACT [EMAPA:29927]
synonym: "neck of uterus" EXACT []
synonym: "uterine cervix" EXACT []
xref: BTO:0001421
xref: EFO:0000979
xref: EMAPA:29927
xref: EV:0100114
xref: FMA:17740
xref: GAID:376
xref: galen:CervixUteri
xref: MA:0000392
xref: MAT:0000292
xref: MESH:A.05.360.319.679.256
xref: ncithesaurus:Cervix
xref: OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA
xref: SCTID:245494008
xref: VHOG:0001359
is_a: UBERON:0001560 {source="FMA"} ! neck of organ
is_a: UBERON:0005156 ! reproductive structure
relationship: continuous_with UBERON:0000996 ! vagina
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0000003
name: naris
def: "Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH]." [UBERON:MAH]
comment: consistency notes: we have classified this as an orifice, according to FMA. Note that in FMA, orifices are immaterial entities, but in ZFA this is a surface structure. Taxon notes: in actinopterygians, both pairs of nares are external. In tetrapods, the exhalant empties into the buccal cavity
subset: uberon_slim
subset: upper_ontology_conflict
subset: vertebrate_core
xref: AAO:0000311
xref: EHDAA2:0001225
xref: EHDAA:9083
xref: EMAPA:17847
xref: galen:Naris
xref: MA:0000282
xref: SCTID:272650008
xref: VHOG:0000663
property_value: UBPROP:0000001 "One of paired external openings of the nasal chamber.[AAO]" xsd:string
is_a: UBERON:0000161 {source="FMA"} ! orifice
relationship: part_of UBERON:0005725
intersection_of: UBERON:0000161 ! orifice
intersection_of: part_of UBERON:0005725 ! olfactory system
relationship: part_of UBERON:0000033 {source="ZFA"} ! head
relationship: part_of UBERON:0005725 ! olfactory system
[Term]
id: UBERON:0000004
name: olfactory apparatus
def: "a protuberance in vertebrates that houses the nostrils, or nares, which admit and expel air for respiration in conjunction with the mouth. Behind the nose are the olfactory mucosa and the sinuses. Behind the nasal cavity, air next passes through the pharynx, shared with the digestive system, and then into the rest of the respiratory system. In humans, the nose is located centrally on the face; on most other mammals, it is on the upper tip of the snout[WP]. GO: The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity)." [Wikipedia:Nose]
comment: TODO - distinguish generic olfactory apparatus from nose; we have olfactory organ for the generic organ - add new class 'olfactory structure'?
subset: major_organ
subset: uberon_slim
subset: vertebrate_core
synonym: "nasal sac" EXACT SENSU [ZFA:0000047]
synonym: "Nasus" RELATED LATIN [Wikipedia:Nose]
synonym: "nose" EXACT []
synonym: "peripheral olfactory organ" EXACT []
synonym: "proboscis" RELATED []
xref: BTO:0000840
xref: EFO:0000828
xref: EHDAA2:0001274
xref: EHDAA:1502
xref: EMAPA:16542
xref: EV:0100037
xref: EV:0100370
xref: FMA:46472
xref: GAID:77
xref: galen:Nose
xref: http://upload.wikimedia.org/wikipedia/commons/d/d0/Canine-nose.jpg
xref: MA:0000281
xref: MAT:0000139
xref: MESH:A.01.456.505.733
xref: MIAA:0000139
xref: ncithesaurus:Nose
xref: OpenCyc:Mx4rvViCbJwpEbGdrcN5Y29ycA
xref: SCTID:181195007
xref: TAO:0000047
xref: ZFA:0000047
is_a: UBERON:0002268 ! olfactory organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0003050 ! olfactory placode
relationship: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0004089 ! midface
[Term]
id: UBERON:0000005
name: chemosensory organ
subset: functional_classification
subset: uberon_slim
synonym: "chemosensory sensory organ" EXACT [FBbt:00005157]
xref: FBbt:00005157
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001016 ! nervous system
relationship: part_of UBERON:0005726 ! chemosensory system
[Term]
id: UBERON:0000006
name: islet of Langerhans
def: "Regions of the pancreas that contain its endocrine (i.e., hormone-producing) cells." [Wikipedia:Islets_of_Langerhans]
comment: A primitive exocrine pancreas can be found in holocephalan cartilaginous fish; a pancreatic duct directly ending in the gut lumen is connected to a glandular structure made of exocrine cells and associated with cell islets, which comprises three different hormone-producing cell types: insulin, somatostatin and glucagon (Yui and Fujita, 1986)[PMID:16417468]
subset: uberon_slim
synonym: "island of Langerhans" RELATED [BTO:0000991]
synonym: "island of pancreas" RELATED [BTO:0000991]
synonym: "islets of langerhans" RELATED []
synonym: "pancreatic insula" EXACT []
synonym: "pancreatic islet" EXACT []
xref: AAO:0010406
xref: BTO:0000991
xref: EFO:0000856
xref: EMAPA:19246
xref: EMAPA:19247
xref: EMAPA:19248
xref: EV:0100130
xref: FMA:16016
xref: GAID:324
xref: http://upload.wikimedia.org/wikipedia/commons/9/99/Gray1105.png
xref: MA:0000127
xref: MAT:0000076
xref: MESH:A.03.734.414
xref: MIAA:0000076
xref: ncithesaurus:Islet_of_Langerhans
xref: VHOG:0000646
xref: XAO:0000159
property_value: UBPROP:0000001 "Anatomical structure which consists of glands developed from pancreatic ducts in the larvae and secrete insulin.[AAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000016 ! endocrine pancreas
[Term]
id: UBERON:0000007
name: pituitary gland
def: "The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN]." [Wikipedia:Pituitary_gland, ZFIN:curator]
comment: Taxon notes: The lamprey possesses a distinct pituitary organ and hormones, the ascidian does not show distinct evidence of them [Sower S, Freamat M, Kavanaugh S. The origins of the vertebrate hypothalamic–pituitary–gonadal (HPG) and hypothalamic–pituitary–thyroid (HPT) endocrine systems: new insights from lampreys. Gen Comp Endocrinol 2009;161:20-9]
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "glandula pituitaria" RELATED [BTO:0001073]
synonym: "hypophysis" RELATED [ZFA:0000118]
synonym: "hypophysis cerebri" RELATED [MA:0000176]
synonym: "hypophysis, glandula pituitaria" RELATED LATIN [Wikipedia:Pituitary_gland]
synonym: "pituitary" EXACT [BTO:0001073]
synonym: "pituitary body" EXACT [BTO:0001073]
xref: AAO:0010536
xref: BM:Die-Hy-HY
xref: BTO:0001073
xref: EFO:0000857
xref: EHDAA2:0001471
xref: EHDAA:2183
xref: EHDAA:4477
xref: EMAPA:16647
xref: EMAPA:16898
xref: EV:0100132
xref: FMA:13889
xref: GAID:457
xref: http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray1180.png/200px-Gray1180.png
xref: MA:0000176
xref: MAT:0000077
xref: MESH:A.06.407.747
xref: MIAA:0000077
xref: ncithesaurus:Pituitary_Gland
xref: NIF_GrossAnatomy:birnlex_1353
xref: OpenCyc:Mx4rv6NQYJwpEbGdrcN5Y29ycA
xref: SCTID:181125003
xref: TAO:0000118
xref: VHOG:0000143
xref: XAO:0000017
xref: ZFA:0000118
property_value: UBPROP:0000001 "An endocrine gland derived from infundibulum of the floor of the diencephalon and an ectodermal dorsal protrusion from the buccal cavity which controls the secretion of many hormones influencing the function of various organs of the body.[AAO]" xsd:string
property_value: UBPROP:0000001 "An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin.[TAO]" xsd:string
is_a: UBERON:0003296 ! gland of diencephalon
is_a: UBERON:0010133 ! neuroendocrine gland
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0000924 {source="Wikipedia"} ! ectoderm
relationship: has_part UBERON:0002196 ! adenohypophysis
relationship: has_part UBERON:0002198 ! neurohypophysis
relationship: part_of UBERON:0001894 {source="ZFA"} ! diencephalon
[Term]
id: UBERON:0000009
name: submucosa
def: "A layer of dense irregular connective tissue in the gastrointestinal tract that supports the mucosa, as well as joins the mucosa to the bulk of underlying smooth muscle (fibers running circularly within layer of longitudinal muscle). [WP,unvetted]." [Wikipedia:Submucosa]
comment: see comments re FMA for mucosa
subset: uberon_slim
synonym: "organ submucosa" EXACT [FMA:85391]
synonym: "region of submucosa" EXACT [FMA:85392]
synonym: "submucosa of organ" EXACT [FMA:85391]
synonym: "submucosa of region of organ" EXACT [FMA:85392]
synonym: "submucous layer" RELATED [BTO:0002107]
synonym: "tela submucosa" RELATED [BTO:0002107]
xref: BTO:0002107
xref: FMA:85391
xref: FMA:85392
xref: http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png
xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png
xref: ncithesaurus:Submucosa
is_a: UBERON:0004923 ! organ component layer
relationship: has_part UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0000010
name: peripheral nervous system
def: "Nervous structures including ganglia outside of the central nervous system. Divided into somatic nervous system and autonomic nervous system" [FB:gg, OMD:peripheral+nervous+system, Wikipedia:Peripheral_nervous_system, ZFIN:curator]
subset: uberon_slim
subset: vertebrate_core
synonym: "pars peripherica; systema nervosum periphericum" RELATED LATIN [Wikipedia:Peripheral_nervous_system]
synonym: "PNS" RELATED []
xref: AAO:0000429
xref: BILA:0000081
xref: BTO:0001028
xref: EFO:0000891
xref: EHDAA2:0001445
xref: EHDAA:2893
xref: EMAPA:16665
xref: EMAPA:18370
xref: EV:0100335
xref: FBbt:00005098
xref: FMA:9903
xref: GAID:715
xref: http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png
xref: MA:0000218
xref: MAT:0000338
xref: MESH:A.08.800
xref: MIAA:0000338
xref: ncithesaurus:Peripheral_Nervous_System
xref: NIF_GrossAnatomy:birnlex_1111
xref: SCTID:362292005
xref: TAO:0000142
xref: VHOG:0000399
xref: XAO:0000178
xref: ZFA:0000142
property_value: "spatially_disjoint_from" UBERON:0001017
property_value: UBPROP:0000001 "Nervous structures including ganglia outside of the central nervous system. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000001 "Part of nervous system in which nerves extend throughout the body outside of the brain and spinal cord.[AAO]" xsd:string
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0000011
name: parasympathetic nervous system
def: "The parasympathetic nervous system (PSNS) is a division of the autonomic nervous system (ANS), along with the sympathetic nervous system (SNS) and enteric nervous system (ENS). The ANS is a subdivision of the peripheral nervous system (PNS). ANS sends fibers to three tissues: cardiac muscle, smooth muscle, or glandular tissue. This stimulation, sympathetic or parasympathetic, is to control smooth muscle contraction, regulate cardiac muscle, or stimulate or inhibit glandular secretion [Wikipedia]. The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia [GO]." [Wikipedia:Parasympathetic_nervous_system]
comment: Development notes: has developmental contribution from NC in verteberates (UBERONREF:0000002)
subset: uberon_slim
subset: vertebrate_core
synonym: "parasympathetic part of autonomic division of nervous system" EXACT []
synonym: "pars parasympathica divisionis autonomici systematis nervosi" EXACT [FMA:9907, FMA:TA]
synonym: "pars parasympathica divisionis autonomici systematis nervosi" RELATED LATIN [Wikipedia:Parasympathetic_nervous_system]
synonym: "PNS - parasympathetic" EXACT []
xref: AAO:0010488
xref: BTO:0001833
xref: EFO:0000894
xref: EHDA:10096
xref: EHDAA2:0001402
xref: EHDAA:4655
xref: EMAPA:17270
xref: FMA:9907
xref: GAID:708
xref: http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png
xref: MA:0000223
xref: MAT:0000101
xref: MESH:A.08.800.050.600
xref: MIAA:0000101
xref: ncithesaurus:Parasympathetic_Nervous_System
xref: NIF_GrossAnatomy:birnlex_2517
xref: SCTID:362496006
xref: TAO:0001575
xref: VHOG:0000755
xref: ZFA:0001575
property_value: UBPROP:0000001 "Part of the autonomic nervous system which has opposing physiological effects of the sympathetic nervous system. Examples include decreasing the heart rate or dilating the blood vessels.[AAO]" xsd:string
is_a: UBERON:0002410 ! autonomic nervous system
relationship: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0000012
name: somatic nervous system
def: "The part of the peripheral nervous system consisting of efferent nerves responsible for stimulating muscle contraction, including all the neurons connected with skeletal muscles, skin, and sense organs[WP, modified]." [Wikipedia:Somatic_nervous_system]
subset: uberon_slim
synonym: "PNS - somatic" EXACT []
synonym: "somatic nervous system, somatic division" EXACT [NIF_GrossAnatomy:nlx_anat_100301]
synonym: "somatic peripheral nervous system" EXACT [NIF_GrossAnatomy:nlx_anat_100301]
xref: EFO:0000892
xref: EFO:0000898
xref: FMA:9904
xref: MA:0002850
xref: MAT:0000099
xref: MAT:0000342
xref: MIAA:0000099
xref: MIAA:0000342
xref: NIF_GrossAnatomy:nlx_anat_100301
xref: WBbt:0005760
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0000013
name: sympathetic nervous system
def: "The Sympathetic Nervous System (SNS) is a branch of the autonomic nervous system along with the enteric nervous system and parasympathetic nervous system. It is always active at a basal level (called sympathetic tone) and becomes more active during times of stress. Its actions during the stress response comprise the fight-or-flight response [Wikipedia]. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [GO]." [Wikipedia:Sympathetic_nervous_system]
comment: Development notes: has developmental contribution from NC in verteberates (UBERONREF:0000002)
subset: uberon_slim
subset: vertebrate_core
synonym: "pars sympathica divisionis autonomici systematis nervosi" EXACT [FMA:9906, FMA:TA]
synonym: "pars sympathica divisionis autonomici systematis nervosi" RELATED LATIN [Wikipedia:Sympathetic_nervous_system]
synonym: "sympathetic nervous system" EXACT []
synonym: "sympathetic part of autonomic division of nervous system" EXACT []
xref: AAO:0010487
xref: BTO:0001832
xref: EFO:0000893
xref: EHDAA2:0001971
xref: EHDAA:3769
xref: EMAPA:16985
xref: FMA:9906
xref: GAID:710
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png
xref: MA:0000225
xref: MESH:A.08.800.050.800
xref: MIAA:0000100
xref: ncithesaurus:Sympathetic_Nervous_System
xref: NIF_GrossAnatomy:birnlex_2516
xref: SCTID:362484004
xref: TAO:0001576
xref: VHOG:0000384
xref: ZFA:0001576
property_value: UBPROP:0000001 "Part of the autonomic nervous system which has opposing physiological effects of the parasympathetic nervous system. Examples include increasing the heart rate or constricting the blood vessels.[AAO]" xsd:string
is_a: UBERON:0002410 ! autonomic nervous system
relationship: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0000014
name: zone of skin
def: "A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin]
comment: we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive
synonym: "portion of skin" EXACT []
synonym: "region of skin" EXACT []
synonym: "skin" EXACT [MA:0000151]
synonym: "skin region" EXACT []
synonym: "skin zone" EXACT []
xref: EHDAA2:0001844
xref: EHDAA:6530
xref: EV:0100152
xref: FMA:86166
xref: GAID:933
xref: http://upload.wikimedia.org/wikipedia/commons/e/e8/HumanSkinDiagram.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png
xref: MA:0000151
xref: MAT:0000284
xref: MESH:A.17.815
xref: MIAA:0000284
xref: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA
xref: SCTID:20795001
xref: VHOG:0000860
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0000015
name: anatomical boundary
def: "Structural anatomical relation which holds between each anatomical entity of one to three dimensions and some immaterial anatomical entity of one lower dimension such that the latter demarcates (delimits) the former from its neighborhood." [FMA:256502]
synonym: "anatomical boundary entity" EXACT [FMA:50705]
xref: AEO:0000192
xref: FMA:50705
is_a: UBERON:0000466 ! immaterial anatomical entity
[Term]
id: UBERON:0000016
name: endocrine pancreas
def: "The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin[GO]." [GOC:GO, Wikipedia:Islets_of_Langerhans]
comment: Editor notes - endocrine and exocrine pancrease are no co-associated in hagfishes or lampreys [PMID:20959416] - create a separate class for these?
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "endocrine pancreas" EXACT []
synonym: "endocrine part of pancreas" RELATED [BTO:0000650]
synonym: "islets of Langerhans" RELATED []
synonym: "pars endocrina pancreatis" EXACT []
xref: BTO:0000650
xref: EV:0100129
xref: FMA:16018
xref: MA:0001582
xref: MESH:A.03.734.414
xref: ncithesaurus:Endocrine_Pancreas
xref: SCTID:361339003
xref: TAO:0001260
xref: VHOG:0000049
xref: ZFA:0001260
property_value: UBPROP:0000001 "The zebrafish endocrine pancreas is composed of small groups of islet cells that are distributed throughout the exocrine pancreas. The islet cells produce insulin, glucagon and somatostatin.[TAO]" xsd:string
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0003923 ! dorsal pancreatic bud
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0000017
name: exocrine pancreas
def: "The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [GO]. The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion." [GOC:GO, Wikipedia:Exocrine_component_of_pancreas]
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "exocrine pancreas" EXACT []
synonym: "exocrine part of pancreas" RELATED [BTO:0000434]
synonym: "pars exocrina pancreatis" EXACT []
xref: AAO:0010407
xref: BTO:0000434
xref: EV:0100093
xref: FMA:16017
xref: MA:0002415
xref: ncithesaurus:Exocrine_Pancreas
xref: SCTID:248202004
xref: TAO:0001249
xref: VHOG:0000048
xref: XAO:0000137
xref: ZFA:0001249
property_value: UBPROP:0000001 "The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion.[TAO]" xsd:string
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0003924 ! ventral pancreatic bud
relationship: part_of UBERON:0001264 ! pancreas
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0000018
name: compound eye
def: "A light sensing organ composed of ommatidia" [FB:gg, Wikipedia:Compound_eye]
subset: organ_slim
subset: uberon_slim
synonym: "adult compound eye" RELATED []
synonym: "Facettenauge" RELATED [BTO:0001921]
synonym: "insect eye" RELATED []
synonym: "Komplexauge" RELATED [BTO:0001921]
synonym: "zusammengesetztes Auge" RELATED [BTO:0001921]
xref: BTO:0001921
xref: FBbt:00004508
xref: HAO:0000217
xref: TGMA:0000024
is_a: UBERON:0000970 ! eye
relationship: has_part UBERON:0000971 ! ommatidium
[Term]
id: UBERON:0000019
name: camera-type eye
def: "The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field[GO]. The eye contains the following parts (when they are present in the organism): the eyeball (eye proper), the lacrimal apparatus, the conjuctival, the eyelid // " [GO:0043010, UBERON:cjm]
comment: AO notes: FMA distinguishes Eye (subdivision of face) which has its parts an Eyeball (organ). MA includes eyelid, conjunctiva and lacrimal apparatus as part of MA:eye - consistent with FMA - so we can infer that MA:eye is more like FMA:eye than FMA:eyeball. For other AOs this distinction is less meaningful - e.g. ZFA has no eyelid; XAO has no eyelid, but it has conjuctiva, which is considered part of the xao:eye. GO considers eyelid development part of eye development. See also notes on optic nerve - XAO, AAO and BTO consider this part of the eye. MA considers the eye muscles part of the eye, whereas FMA has a class 'orbital content' for this
subset: uberon_slim
subset: vertebrate_core
synonym: "camera-type eye plus associated structures" RELATED []
synonym: "eye" BROAD [FMA:54448]
synonym: "orbital part of face" EXACT [FMA:54448]
synonym: "orbital region" RELATED [FMA:54448]
synonym: "regio orbitalis" EXACT [FMA:54448, FMA:TA]
synonym: "vertebrate eye" NARROW []
xref: AAO:0010340
xref: BTO:0004688
xref: EHDAA2:0000484
xref: EHDAA:936
xref: EMAPA:16198
xref: FMA:54448
xref: MA:0000261
xref: ncithesaurus:Eye
xref: NIF_GrossAnatomy:birnlex_1169
xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA
xref: SCTID:181143004
xref: TAO:0000107
xref: VHOG:0000275
xref: XAO:0000179
xref: ZFA:0000107
property_value: UBPROP:0000001 "A cavitated compound organ that transduces light waves into neural signals.[TAO]" xsd:string
is_a: UBERON:0000047 ! simple eye
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003072 {evidence="definitional"} ! optic cup
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0004088 ! ocular region
[Term]
id: UBERON:0000020
name: sense organ
def: "An organ that is part of a sense organ system." [UBERON:cjm]
subset: uberon_slim
synonym: "organ of sense organ system" EXACT [OBOL:automatic]
synonym: "organ of sensory organ system" EXACT [OBOL:automatic]
synonym: "organ of sensory system" EXACT [OBOL:automatic]
synonym: "sense organ system organ" EXACT [OBOL:automatic]
synonym: "sensillum" NARROW [WBbt:0006929]
synonym: "sensor" RELATED []
synonym: "sensory organ" EXACT []
synonym: "sensory organ system organ" EXACT [OBOL:automatic]
synonym: "sensory system organ" EXACT [OBOL:automatic]
synonym: "Sinnesorgan" RELATED [BTO:0000202]
xref: AEO:0000094
xref: BTO:0000202
xref: EHDAA2:0001824
xref: EHDAA:500
xref: EMAPA:16192
xref: FBbt:00005155
xref: GAID:63
xref: HAO:0000930
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png
xref: MA:0000017
xref: MESH:A.09
xref: ncithesaurus:Organ_of_the_Special_Sense
xref: SCTID:244485009
xref: VHOG:0001407
xref: WBbt:0006929
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001032
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0001032 ! sensory system
relationship: part_of UBERON:0001032 ! sensory system
[Term]
id: UBERON:0000021
name: cutaneous appendage
def: "Appendage that protrudes from the skin." [UBERON:cjm]
comment: Examples: hair, nail (FMA); feather, claw, hoof, horn, wattle, spur, beak, scale(?), antler, bristle. Editors note: Mammary glands develop by similar mechanisms, and there is an argument for including them here (e.g. PMID:20484386), but these structures do not fit the current definition. TODO: revise after definition of appendage is finalized in CARO2; in addition, verify subtypes w.r.t definition - e.g. beaks may overlap with skin of body rather than being part of it - rhamphotheca may be more appropriate
subset: uberon_slim
synonym: "epidermal appendage" NARROW []
synonym: "epidermal growth" RELATED []
synonym: "skin appendage" EXACT [FMA:71012]
xref: FMA:71012
xref: SCTID:276160000
is_a: UBERON:0000026 ! appendage
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0000022
name: feather
def: "one of the epidermal growths that form the distinctive outer covering, or plumage, on birds. Feathers are formed in tiny follicles in the epidermis, or outer skin layer, that produce keratin proteins. The β-keratins in feathers, beaks and claws — and the claws, scales and shells of reptiles — are composed of protein strands hydrogen-bonded into β-pleated sheets, which are then further twisted and crosslinked by disulfide bridges into structures even tougher than the α-keratins of mammalian hair, horns and hoof. The exact signals that induce the growth of feathers on the skin are not known but it has been found that the transcription factor cDermo-1 induces the growth of feathers on skin and scales on the leg." [Wikipedia:Feather]
comment: They are among the characteristics that distinguish the extant Aves from other living groups. Feathers have also been noticed in those Theropoda which have been termed feathered dinosaurs. Although feathers cover most parts of the body of birds, they arise only from certain well-defined tracts on the skin. They aid in flight, thermal insulation, waterproofing and coloration that helps in communication and protection
subset: uberon_slim
xref: BTO:0000447
xref: EFO:0000955
xref: GAID:1214
xref: http://upload.wikimedia.org/wikipedia/commons/4/41/Parts_of_feather_modified.jpg
xref: MAT:0000156
xref: MESH:A.13.370
xref: OpenCyc:Mx4rvVjW-5wpEbGdrcN5Y29ycA
xref: SCTID:410027006
is_a: UBERON:0000021 ! cutaneous appendage
relationship: develops_from UBERON:0001003 ! epidermis
[Term]
id: UBERON:0000023
name: wing
def: "Appendage that is used to produce lift for flight through the air." [Wikipedia:Wing]
comment: This class is not monophyletic. See also: GO:0007629
subset: grouping_class
subset: uberon_slim
xref: BTO:0001463
xref: EFO:0000885
xref: GAID:1217
xref: MAT:0000202
xref: MESH:A.13.395.823
xref: MIAA:0000202
is_a: UBERON:0000026 ! appendage
[Term]
id: UBERON:0000024
name: forelimb wing
def: "Forelimb that is used to produce lift for flight through the air." []
comment: Examples: bat wing, bird wing
property_value: "homologous_to" UBERON:0002102
is_a: UBERON:0000023 ! wing
is_a: UBERON:0002102 ! forelimb
[Term]
id: UBERON:0000025
name: tube
def: "Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts. with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system" [GO:0035295, PMID:12526790]
synonym: "epithelial or endothelial tube" EXACT []
xref: galen:Tube
is_a: UBERON:0004111 ! anatomical conduit
[Term]
id: UBERON:0000026
name: appendage
def: "Major subdivision of an organism that protrudes from the body[DOS]. Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs[BILA]." [BILA:0000018, GO:0048736, Wikipedia:Appendage]
comment: GO includes tree trunks, but excludes antennae. We modify trunk to body in our definition. Note this is currently a subtype of organism subdivision - which would exclude feathers
subset: uberon_slim
synonym: "limbs/digits/tail" RELATED [MP:0000001]
xref: AEO:0000193
xref: BILA:0000018
xref: CARO:0010003
xref: EFO:0000799
xref: EHDAA2:0003193
xref: EV:0100155
xref: FBbt:00007000
xref: HAO:0000144
xref: MAT:0000023
xref: MIAA:0000023
xref: ncithesaurus:Appendage
xref: OpenCyc:Mx4rvViC-JwpEbGdrcN5Y29ycA
xref: VSAO:0000075
xref: XAO:0000218
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000029
name: lymph node
def: "Oval or bean shaped bodies (1 - 30 mm in diameter) located along the lymphatic system. Lymph nodes are garrisons of B, T, and other immune cells. Lymph nodes are found all through the body, and act as filters or traps for foreign particles. They contain white blood cells that use oxygen to process. Thus they are important in the proper functioning of the immune system. The lymph node is surrounded by a fibrous capsule, and inside the lymph node the fibrous capsule extends to form trabeculae. The substance of the lymph node is divided into the outer cortex and the inner medulla surrounded by the former all around except for at the hilum, where the medulla comes in direct contact with the surface. Thin reticular fibers, elastin and reticular fibers form a supporting meshwork called reticular network (RN) inside the node, within which the white blood cells (WBCs), most prominently, lymphocytes are tightly packed as follicles in the cortex. Elsewhere, there are only occasional WBCs. The RN provides not just the structural support, but also provide surface for adhesion of the dendritic cells, macrophages and lymphocytes. It allows for exchange of material with blood through the high endothelial venules and provides the growth and regulatory factors necessary for activation and maturation of immune cells[WP]." [GAID:947, Wikipedia:Lymph_node]
subset: uberon_slim
subset: vertebrate_core
synonym: "nodus lymphaticus" RELATED LATIN [Wikipedia:Lymph_node]
xref: BTO:0000784
xref: EFO:0000872
xref: EV:0100050
xref: FMA:5034
xref: GAID:947
xref: galen:Lymphnode
xref: http://upload.wikimedia.org/wikipedia/commons/b/b8/Illu_lymph_node_structure.png
xref: MA:0000139
xref: MAT:0000442
xref: MESH:A.15.382.520.604.412
xref: ncithesaurus:Lymph_Node
xref: OpenCyc:Mx4rwLPqLpwpEbGdrcN5Y29ycA
xref: SCTID:181756000
xref: TAO:0005318
xref: VHOG:0001273
xref: ZFA:0005318
property_value: RO:0002161 NCBITaxon:8570
property_value: "spatially_disjoint_from" UBERON:0002106
is_a: UBERON:0000064 ! organ part
relationship: continuous_with UBERON:0001473 ! lymphatic vessel
relationship: has_part UBERON:0002391 ! lymph
relationship: part_of UBERON:0002465 ! lymphoid system
[Term]
id: UBERON:0000030
name: lamina propria
def: "A thin layer of loose connective tissue which lies beneath the epithelium and together with the epithelium constitutes the mucosa[WP]. The lamina propria contains capillaries and a central lacteal (lymph vessel) in the small intestine, as well as lymphoid tissue. Lamina propria also contains glands with the ducts opening on to the mucosal epithelium, that secrete mucus and serous secretions." [Wikipedia:Lamina_of_the_vertebral_arch_propria]
subset: uberon_slim
synonym: "lamina propria mucosa" EXACT []
synonym: "lamina propria mucosae" EXACT []
synonym: "tunica propria" RELATED [BTO:0002330]
xref: BTO:0002330
xref: FMA:62517
xref: ncithesaurus:Lamina_Propria
xref: SCTID:298225002
is_a: UBERON:0004923 ! organ component layer
relationship: adjacent_to UBERON:0000483 ! epithelium
relationship: has_part UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0000344 ! mucosa
[Term]
id: UBERON:0000031
name: lamina propria of trachea
synonym: "lamina propria mucosa of trachea" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of windpipe" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of trachea" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of windpipe" EXACT [OBOL:automatic]
synonym: "lamina propria of windpipe" EXACT [OBOL:automatic]
synonym: "trachea lamina propria" EXACT []
synonym: "trachea lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "trachea lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "tracheal lamina propria" EXACT []
synonym: "windpipe lamina propria" EXACT [OBOL:automatic]
synonym: "windpipe lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "windpipe lamina propria mucosae" EXACT [OBOL:automatic]
xref: MA:0001858
xref: ncithesaurus:Trachea_Lamina_Propria
is_a: UBERON:0004779 ! respiratory system lamina propria
relationship: part_of UBERON:0001005
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0001005 ! respiratory airway
relationship: part_of UBERON:0001005 ! respiratory airway
[Term]
id: UBERON:0000032
name: cranial structure
comment: obsoleted as it was a grouping class that served no purpose
is_obsolete: true
[Term]
id: UBERON:0000033
name: head
def: "The head is the anterior-most division of the body [GO]." [GO:0060322, Wikipedia:Head]
subset: uberon_slim
subset: vertebrate_core
synonym: "adult head" NARROW []
synonym: "cephalic area" RELATED [SPD:0000016]
synonym: "head (volume)" EXACT [FMA:7154]
xref: AAO:0010335
xref: AEO:0000106
xref: BILA:0000115
xref: BTO:0000282
xref: EFO:0000964
xref: EHDAA2:0003106
xref: FBbt:00000004
xref: FMA:7154
xref: GAID:61
xref: galen:Head
xref: HAO:0000397
xref: MA:0000023
xref: MAT:0000294
xref: MESH:A.01.456
xref: MIAA:0000294
xref: ncithesaurus:Head
xref: NIF_GrossAnatomy:birnlex_1230
xref: OpenCyc:Mx4rEOLm4rgPEdmAAAACs6hRjg
xref: OpenCyc:Mx4rvVi6YJwpEbGdrcN5Y29ycA
xref: SCTID:302548004
xref: SPD:0000016
xref: TAO:0001114
xref: TGMA:0000002
xref: VHOG:0001644
xref: WBbt:0005739
xref: XAO:0003024
xref: ZFA:0001114
property_value: "spatially_disjoint_from" UBERON:0000948
property_value: "spatially_disjoint_from" UBERON:0002100
property_value: UBPROP:0000001 "Organism subdivision that is the part of the body consisting of the cranial and pharyngeal regions.[AAO]" xsd:string
property_value: UBPROP:0000001 "Organism subdivision which is the part of the body which consists of the cranial and pharygeal regions.[TAO]" xsd:string
is_a: UBERON:0011676 ! axial subdivision of organism
relationship: part_of UBERON:0000153 ! anterior region of body
relationship: part_of UBERON:0007811 ! craniocervical region
[Term]
id: UBERON:0000035
name: primary ovarian follicle
synonym: "folliculus ovaricus primarius" EXACT []
synonym: "ovary primary follicle" EXACT [MA:0002907]
synonym: "preantral follicle of ovary" EXACT []
synonym: "primary egg follicle" RELATED []
synonym: "primary follicle of ovary" EXACT [FMA:18634]
xref: BTO:0000410
xref: EMAPA:19284
xref: FMA:18634
xref: MA:0002907
xref: SCTID:258665002
is_a: UBERON:0001305 ! ovarian follicle
[Term]
id: UBERON:0000036
name: secondary ovarian follicle
synonym: "antral follice" EXACT [GO:0001547]
synonym: "antral follicle of ovary" EXACT []
synonym: "antral ovarian follice" EXACT [GO:0001547]
synonym: "folliculus ovaricus secondarius" EXACT []
synonym: "ovary antral follicle" EXACT [MA:0002909]
synonym: "ovary secondary follicle" EXACT [MA:0002908]
synonym: "secondary egg follicle" RELATED []
synonym: "secondary follicle of ovary" EXACT []
xref: EMAPA:29862
xref: FMA:18637
xref: MA:0002908
xref: MA:0002909
is_a: UBERON:0001305 ! ovarian follicle
relationship: develops_from UBERON:0000035 ! primary ovarian follicle
[Term]
id: UBERON:0000037
name: tertiary ovarian follicle
def: "Ovarian follicle is the basic unit of female reproductive biology and is composed of roughly spherical aggregations of cells found in the ovary. They contain a single oocyte (aka ovum or egg). These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte. These eggs/ova are only developed once every menstrual cycle (i. e, once a month). [WP,unvetted]." [Wikipedia:Graafian_follicle]
subset: uberon_slim
synonym: "folliculi ovarici vesiculosi" EXACT [FMA:18641, FMA:TA]
synonym: "folliculus ovaricus tertiarius" EXACT []
synonym: "folliculus ovaricus tertiarius (vesiculosus)" EXACT [FMA:18641]
synonym: "folliculus ovaricus tertiarius (vesiculous)" EXACT []
synonym: "Graafian follicle" EXACT []
synonym: "tertiary egg follicle" RELATED []
synonym: "tertiary follicle of ovary" EXACT [FMA:18641]
synonym: "vesicular follicle of ovary" EXACT [FMA:18641]
synonym: "vesicular ovarian follicle" EXACT [FMA:18641]
xref: EMAPA:30763
xref: FMA:18641
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Primary_follicle-4.JPG/200px-Primary_follicle-4.JPG
xref: ncithesaurus:Graafian_Follicle
xref: SCTID:362261008
is_a: UBERON:0001305 ! ovarian follicle
relationship: develops_from UBERON:0000036 ! secondary ovarian follicle
[Term]
id: UBERON:0000038
name: follicular fluid
def: "The fluid surrounding the OVUM and GRANULOSA CELLS in the Graafian follicle ( OVARIAN FOLLICLE). The follicular fluid contains sex steroids, glycoprotein hormones, plasma proteins, mucopolysaccharides, and enzymes." [MESH:D015571, Wikipedia:Follicular_fluid]
comment: Follicular fluid is a liquid which fills the follicular antrum and surrounds the ovum in an ovarian follicle. This fluid is rich in hyaluronic acid.
subset: uberon_slim
synonym: "antral fluid, ovarian follicle" RELATED []
synonym: "liquor follicularis" EXACT [FMA:18665]
synonym: "liquor folliculi" EXACT []
synonym: "liquor folliculi" RELATED LATIN [Wikipedia:Follicular_fluid]
synonym: "ovarian follicular fluid" RELATED [BTO:0004383]
synonym: "ovary follicle fluid" EXACT [MA:0002511]
synonym: "ovary follicular fluid" RELATED [BTO:0004383]
xref: BTO:0004383
xref: FMA:18665
xref: GAID:372
xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Gray3.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray3.png/200px-Gray3.png
xref: MA:0002511
xref: MESH:A.05.360.319.114.630.535.150
xref: ncithesaurus:Ovarian_Follicle_Fluid
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001305 ! ovarian follicle
relationship: surrounded_by UBERON:0000039 ! follicular antrum
[Term]
id: UBERON:0000039
name: follicular antrum
def: "Region of ovarian follicle filled with follicular fluid." [http://en.wikipedia.org/wiki/Follicular_antrum, Wikipedia:Follicular_antrum]
subset: uberon_slim
synonym: "antral cavity" EXACT [FMA:18675]
synonym: "antrum folliculare" EXACT [FMA:18675]
synonym: "antrum follicularum" RELATED LATIN [Wikipedia:Follicular_antrum]
xref: FMA:18675
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001305 ! ovarian follicle
[Term]
id: UBERON:0000040
name: Leydig's organ
def: "A hemopoietic organ found in elasmobranchs. Along with the spleen and special tissue around the gonads, this structure produces red blood cells and it is nestled along the top and bottom of the esophagus." [http://www.elasmo-research.org/education/topics/p_blood_cells.htm, Wikipedia:Leydig's_organ]
comment: Taxon notes: Found in elasmobranchs (sharks and rays) but with some exceptions. Phenotype notes: Leydig's organ can be quite large - a 1.6-kilogram (3.5-pound) one was reported from a 1.8-metre (6-foot) long Bluntnose Sixgill Shark (Hexanchus griseus). Structure notes: divided into dorsal and ventral patches, gradation varies between species. Lacks erythroblasts and fat cells[Honma 1983]
subset: uberon_slim
property_value: RO:0002161 NCBITaxon:7863
is_a: UBERON:0004177 ! hemopoietic organ
is_a: UBERON:0005057 ! immune organ
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0000041
name: dermal denticle
def: "Multi-tissue structure composed of enameloid, dentine surrounding a pulp cavity, and bone of attachment anchoring the element into the dermis[VSAO]. small outgrowths which cover the skin of many cartilaginous fish including sharks. They are similar in structure to teeth, and teeth may have evolved from denticle-like structures in primitive fish.[citation needed] The placoid scales in sharks are formed of dentine with dermal papillae located in the core. These scales develop from the dermal layer of the skin, which is in contrast to the epidermal development seen the in the elasmoid scales of tetrapods. The shape of denticle varies from species to species and can be used in identification. Studies have found that the denticles create tiny vortices that reduce drag to make swimming more efficient. Denticles also allow sharks to swim silently compared to other fish that generate considerable noise when they ply the water[WP]." [VSAO:0000079, Wikipedia:Dermal_denticle]
comment: TODO check dentin def // Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone.
subset: uberon_slim
synonym: "placoid scale" EXACT []
xref: VSAO:0000079
property_value: UBPROP:0000001 "Multi-tissue structure composed of enameloid, dentine surrounding a pulp cavity, and bone of attachment anchoring the element into the dermis.[VSAO]" xsd:string
is_a: UBERON:0004756 ! dermal skeletal element
relationship: has_part UBERON:0001751 ! dentine
[Term]
id: UBERON:0000042
name: serous membrane
def: "a smooth membrane consisting of a thin layer of cells which excrete serous fluid. Serous membranes line and enclose several body cavities, known as serous cavities, where they secrete a lubricating fluid which reduces friction from muscle movement. Serosa is not to be confused with adventitia, a connective tissue layer which binds together structures rather than reducing friction between them. Each serous membrane is composed of a secretory epithelial layer and a connective tissue layer underneath. The epithelial layer, known as mesothelium, consists of a single layer of avascular flat nucleated cells (cuboidal epithelium) which produce the lubricating serous fluid. This fluid has a consistency similar to thin mucus. These cells are bound tightly to the underlying connective tissue. The connective tissue layer provides the blood vessels and nerves for the overlying secretory cells, and also serves as the binding layer which allows the whole serous membrane to adhere to organs and other structures.[WP]." [Wikipedia:Serosa, Wikipedia:Serous_membrane]
comment: TODO - add generic membrane parent? TODO - split into serosa and serous membrane?
subset: uberon_slim
subset: vertebrate_core
synonym: "serosa" EXACT []
synonym: "tunica serosa" EXACT [FMA:9581]
synonym: "tunica seroso" RELATED LATIN [Wikipedia:Serous_membrane]
synonym: "wall of serous sac" EXACT [FMA:9581]
xref: FMA:45637
xref: FMA:9581
xref: GAID:19
xref: http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png
xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png
xref: MESH:A.10.615.789
xref: ncithesaurus:Serosa
xref: SCTID:362878009
xref: TAO:0005425
xref: ZFA:0005425
property_value: UBPROP:0000001 "A multi-tissue structure that is comprised of a secretory epithelial layer and a connective tissue layer.[TAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004457 ! cavity lining
relationship: develops_from UBERON:0000926 {source="Wikipedia"} ! mesoderm
relationship: has_part UBERON:0001136 ! mesothelium
relationship: has_part UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0000043
name: tendon
def: "Dense regular connective tissue that connects muscle to bone[VSAO]." [VSAO:0000073, Wikipedia:Tendon]
comment: AO notes: in FMA, tendon is an organ component that with parts dense-irregular-connective-tissue of tendon and dense-irregular-connective-tissue of tendon sheath; we follow VSAO in making it a subtype of the former. In VSAO tendons connect muscle to bone; in WP the def states integument (e.g. auricular muscles) - but JB confirms this is not actually tendon but aponeurosis
subset: uberon_slim
synonym: "sinew" RELATED [Wikipedia:Tendon]
synonym: "tendo" RELATED LATIN [Wikipedia:Tendon]
xref: AEO:0000091
xref: BTO:0001356
xref: EHDAA2:0003091
xref: EV:0100149
xref: FMA:9721
xref: GAID:276
xref: galen:Tendon
xref: http://upload.wikimedia.org/wikipedia/commons/3/3c/Achilles-tendon.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Achilles-tendon.jpg/200px-Achilles-tendon.jpg
xref: MA:0000115
xref: MESH:A.02.880
xref: ncithesaurus:Tendon
xref: OpenCyc:Mx4rvVjefJwpEbGdrcN5Y29ycA
xref: SCTID:256667004
xref: VHOG:0001286
xref: VSAO:0000073
xref: XAO:0000173
xref: ZFA:0005647
property_value: UBPROP:0000001 "Dense regular connective tissue that connects muscle to bone.[VSAO]" xsd:string
is_a: UBERON:0007846 {source="VSAO"} ! dense regular collagenous tissue
relationship: connects UBERON:0001474 ! bone
relationship: connects UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0002204 {source="OG"} ! musculoskeletal system
[Term]
id: UBERON:0000044
name: dorsal root ganglion
def: "ganglion on the dorsal root of each spinal nerve that is one of a series of ganglia lodging cell bodies of sensory neurons[BTO]. Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves[..]. one on the posterior root of each spinal nerve, composed of unipolar nerve cell bodies of the sensory neurons of the nerve[TFD]." [Wikipedia:Dorsal_root_ganglion]
comment: Development notes: The sensory ganglia of spinal nerves arise only from the neural crest, whereas many sensory ganglia of the “dorsal” cranial nerves arise from epibranchial placodes as well as the neural crest[doi: 10.1093/icb/icn065]. Other ontology notes: FMA treats dorsal root ganglion and spinal ganglion as equivalent labels. MA is the only ontology to introduce two classes here (also EHDAA2)
subset: uberon_slim
subset: vertebrate_core
synonym: "dorsal root ganglia" RELATED PLURAL []
synonym: "dorsal root ganglion" EXACT [BTO:0001264]
synonym: "DRG" RELATED []
synonym: "ganglion of dorsal root" EXACT [OBOL:automatic]
synonym: "ganglion sensorium nervi spinalis" RELATED [BTO:0001264]
synonym: "ganglion sensorium nervi spinalis" RELATED LATIN [Wikipedia:Dorsal_root_ganglion]
synonym: "ganglion spinale" RELATED [BTO:0001264]
synonym: "ganglion spinalis" EXACT [FMA:5888]
synonym: "spinal ganglion" EXACT [FMA:5888]
xref: AAO:0011032
xref: BTO:0001264
xref: EFO:0000900
xref: EHDAA2:0000418
xref: EHDAA2:0001897
xref: EHDAA:2899
xref: EMAPA:16668
xref: EMAPA:18372
xref: EV:0100373
xref: FMA:5888
xref: http://upload.wikimedia.org/wikipedia/commons/7/71/DRG_Chicken_e7.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/DRG_Chicken_e7.jpg/200px-DRG_Chicken_e7.jpg
xref: MA:0000231
xref: MA:0000232
xref: MAT:0000162
xref: MIAA:0000162
xref: ncithesaurus:Dorsal_Root_Ganglion
xref: NIF_GrossAnatomy:birnlex_2596
xref: SCTID:244455004
xref: TAO:0000200
xref: VHOG:0000222
xref: XAO:0000210
xref: ZFA:0000200
property_value: UBPROP:0000001 "Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves.[TAO]" xsd:string
is_a: UBERON:0001800 {source="MA"} ! sensory ganglion
is_a: UBERON:0003338 ! ganglion of peripheral nervous system
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002261
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0002261 ! dorsal root of spinal cord
relationship: develops_from UBERON:0003083 {source="UBERONREF:0000002", source="ZFA"} ! trunk neural crest
relationship: part_of UBERON:0002261 ! dorsal root of spinal cord
[Term]
id: UBERON:0000045
name: ganglion
def: "A biological tissue mass, most commonly a mass of nerve cell bodies." [Wikipedia:Ganglion]
comment: TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system. // Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com).
subset: uberon_slim
subset: vertebrate_core
synonym: "ganglia" RELATED []
synonym: "neural ganglion" RELATED [BTO:0000497]
xref: AAO:0010426
xref: AEO:0000135
xref: BTO:0000497
xref: EFO:0000899
xref: EHDAA2:0003135
xref: EHDAA:2897
xref: EHDAA:4662
xref: EHDAA:5621
xref: EHDAA:918
xref: EV:0100372
xref: FBbt:00005137
xref: FMA:5884
xref: MA:0002406
xref: MAT:0000207
xref: MAT:0000343
xref: MESH:A.08.340
xref: MIAA:0000207
xref: MIAA:0000343
xref: ncithesaurus:Ganglion
xref: NIF_GrossAnatomy:nlx_anat_100302
xref: TAO:0000190
xref: TGMA:0001016
xref: VHOG:0000156
xref: WBbt:0005189
xref: XAO:0000209
xref: ZFA:0000190
property_value: UBPROP:0000001 "Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system.[AAO]" xsd:string
property_value: UBPROP:0000001 "Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string
is_a: UBERON:0003714 {source="EHDAA2"} ! neural tissue
disjoint_from: UBERON:0002420 ! basal ganglion
relationship: develops_from UBERON:0003869 {evidence="definitional"} ! presumptive ganglion
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0000046
name: stemma
def: "eye-spots which may be set into a pit to reduce the angles of light that enters and affects the eyespot, to allow the organism to deduce the angle of incoming light" [Wikipedia:Eye#Pit_eyes, Wikipedia:Stemma]
subset: uberon_slim
synonym: "pit eye" EXACT [Wikipedia:Eye#Pit_eyes]
is_a: UBERON:0000047 ! simple eye
[Term]
id: UBERON:0000047
name: simple eye
def: "An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes]
subset: grouping_class
subset: uberon_slim
xref: TGMA:0000729
is_a: UBERON:0000970 ! eye
[Term]
id: UBERON:0000048
name: pinhole eye
def: "Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids." [DOI:10.1146/annurev.ne.15.030192.000245, Wikipedia:Pinhole_eye]
subset: grouping_class
subset: uberon_slim
is_a: UBERON:0000047 ! simple eye
[Term]
id: UBERON:0000049
name: spherical lensed eye
def: "simple eye that consists of a lens of one refractive index" [Wikipepedia:Eye#Spherical_lensed_eye]
subset: grouping_class
is_a: UBERON:0000047 ! simple eye
[Term]
id: UBERON:0000050
name: simple eye with multiple lenses
def: "simple eye that has two or more lenses. Some marine organisms bear more than one lens; for instance the copeopod Pontella has three. The outer has a parabolic surface, countering the effects of spherical aberration while allowing a sharp image to be formed. Copilla's eyes have two lenses, which move in and out like a telescope" [Wikipedia:Eye#Multiple_lenses]
subset: grouping_class
subset: uberon_slim
is_a: UBERON:0000047 ! simple eye
relationship: has_part UBERON:0000965 ! lens of camera-type eye
[Term]
id: UBERON:0000051
name: fornix of vagina
def: "There are three named fornices: The posterior fornix is the larger recess, behind the cervix. It is close to the rectouterine pouch. There are two smaller recesses in front and at the sides: the anterior fornix is close to the vesicouterine pouch. the lateral fornix[WP,unvetted]." [Wikipedia:Vaginal_fornix_of_brain_vaginae]
subset: uberon_slim
synonym: "fornix" BROAD []
synonym: "fornix vaginae" EXACT [FMA:19985, FMA:TA]
synonym: "vaginal fornix" EXACT []
xref: FMA:19985
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: ncithesaurus:Vaginal_Fornix
xref: SCTID:245475003
is_a: UBERON:0002553 ! anatomical cavity
disjoint_from: UBERON:0000052 ! fornix of brain
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0000052
name: fornix of brain
def: "The fornix (Latin, 'vault' or 'arch') is a C-shaped bundle of fibres in the brain, and carries signals from the hippocampus to the mammillary bodies and septal nuclei. [WP,unvetted]." [Wikipedia:Vaginal_fornix_of_brain_of_brain]
subset: uberon_slim
synonym: "brain fornix" EXACT []
synonym: "cerebral fornix" EXACT []
synonym: "fornix" BROAD []
synonym: "fornix of neuraxis" EXACT [FMA:83865]
synonym: "neuraxis fornix" EXACT [FMA:83865]
xref: FMA:83865
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png
xref: MA:0002747
xref: ncithesaurus:Cerebral_Fornix
xref: NIF_GrossAnatomy:birnlex_705
xref: SCTID:279302004
is_a: UBERON:0002437 ! cerebral white matter
[Term]
id: UBERON:0000053
name: macula lutea
def: "Oval yellow spot near the center of the retina of the human eye. It has a diameter of around 5 mm and is often histologically defined as having two or more layers of ganglion cells. Near its center is the fovea, a small pit that contains the largest concentration of cone cells in the eye and is responsible for central vision, and also contains the parafovea and perifovea[WP]. It is devoid of retinal blood vessels, except in its periphery, and receives nourishment from the choriocapillaris of the choroid. (From Cline et al., Dictionary of Visual Science, 4th ed)" [MESH:A.09.371.729.522, Wikipedia:Macula_of_retina]
subset: uberon_slim
synonym: "macula" RELATED []
synonym: "macula flava retinae" RELATED [BTO:0003015]
synonym: "macula retinae" RELATED [BTO:0003015]
synonym: "maculae" RELATED []
xref: BTO:0003015
xref: EV:0100349
xref: FMA:58637
xref: GAID:909
xref: http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Human_eye_cross-sectional_view_grayscale.png/200px-Human_eye_cross-sectional_view_grayscale.png
xref: MA:0001306
xref: MESH:A.09.371.729.522
xref: ncithesaurus:Macula
xref: ncithesaurus:Macula_Lutea
xref: NIF_GrossAnatomy:birnlex_2540
xref: SCTID:362517001
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
disjoint_from: UBERON:0000054 ! macula
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0000054
name: macula
def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern." [Macula_of_saccule, ZFIN:curator]
subset: uberon_slim
synonym: "macula" EXACT []
synonym: "maculae" EXACT PLURAL []
synonym: "sensory macula" EXACT [ZFA:0000386]
synonym: "sensory patch" EXACT [ZFA:0000386]
xref: GAID:777
xref: TAO:0000386
xref: ZFA:0000386
property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0000055
name: vessel
def: "A tubular structure that contains, conveys body fluid, such as blood or lymph." [UBERON:cjm]
comment: compare with UBERON:0008782
subset: grouping_class
is_a: UBERON:0004111 ! anatomical conduit
[Term]
id: UBERON:0000056
name: ureter
def: "Muscular duct that propels urine from the kidneys to the urinary bladder, or related organs. In humans, organ with organ cavity which connects the renal sinus to the urinary bladder. Examples: the right and the left ureters." [FMA:9704, GO:0090189, Wikipedia:Ureter]
subset: major_organ
subset: organ_slim
subset: uberon_slim
synonym: "metanephric duct" RELATED [ISBN10:0073040584, VHOG:0000605]
xref: AAO:0010254
xref: BTO:0001409
xref: EFO:0000930
xref: EHDAA2:0002139
xref: EHDAA:9341
xref: EMAPA:17950
xref: EV:0100097
xref: FMA:9704
xref: GAID:438
xref: galen:Ureter
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Urinary_system.svg/200px-Urinary_system.svg.png
xref: MA:0000378
xref: MAT:0000120
xref: MESH:A.05.810.776
xref: MIAA:0000120
xref: ncithesaurus:Ureter
xref: OpenCyc:Mx4rvhmm6JwpEbGdrcN5Y29ycA
xref: SCTID:302511008
xref: VHOG:0000605
xref: XAO:0000144
property_value: UBPROP:0000001 "Anatomical structure consisting of long narrow duct which carries urine from the kidney to the urinary bladder.[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005179 ! pelvis organ
is_a: UBERON:0006555 ! excretory tube
relationship: channel_for UBERON:0001088 ! urine
relationship: channels_from UBERON:0001224 ! renal pelvis
relationship: channels_into UBERON:0001255 ! urinary bladder
relationship: develops_from UBERON:0005081 {source="GO"} ! ureter ureteric bud
relationship: part_of UBERON:0002355 {xref="MA:0000378"} ! pelvis
relationship: part_of UBERON:0011143 {source="FMA"} ! upper urinary tract
[Term]
id: UBERON:0000057
name: urethra
def: "A tube which connects the urinary bladder to the outside of the body. In males, the urethra travels through the penis, and carries semen as well as urine. In females, the urethra is shorter and emerges above the vaginal opening. The external urethral sphincter is a striated muscle that allows voluntary control over urination." [Wikipedia:Urethra]
subset: major_organ
subset: organ_slim
subset: uberon_slim
xref: BTO:0001426
xref: EFO:0000931
xref: EMAPA:30901
xref: EV:0100099
xref: FMA:19667
xref: GAID:390
xref: galen:Urethra
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: MA:0000379
xref: MAT:0000121
xref: MESH:A.05.360.444.492.726
xref: MIAA:0000121
xref: ncithesaurus:Urethra
xref: OpenCyc:Mx4rvVjkypwpEbGdrcN5Y29ycA
xref: SCTID:302513006
xref: VHOG:0001264
xref: XAO:0000153
is_a: UBERON:0000062 ! organ
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0006554 ! urinary system structure
relationship: channel_for UBERON:0001088 ! urine
relationship: channels_from UBERON:0001255 ! urinary bladder
relationship: continuous_with UBERON:0001255 ! urinary bladder
relationship: develops_from UBERON:0000164 {source="Wikipedia"} ! primitive urogenital sinus
relationship: part_of UBERON:0001556 ! lower urinary tract
[Term]
id: UBERON:0000058
name: duct
def: "A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171]
comment: TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways. Consider adding duct of gland
subset: vertebrate_core
synonym: "anatomical duct" EXACT []
synonym: "exocrine duct" RELATED []
synonym: "exocrine gland duct" RELATED []
xref: AAO:0011123
xref: FMA:30320
xref: galen:Duct
xref: ncithesaurus:Duct
xref: TAO:0005171
xref: XAO:0004000
xref: ZFA:0005171
is_a: UBERON:0004111 ! anatomical conduit
[Term]
id: UBERON:0000059
name: large intestine
def: "The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)]
subset: major_organ
subset: organ_slim
synonym: "intestinum crassum" RELATED [BTO:0000706]
xref: AAO:0010396
xref: BTO:0000706
xref: EFO:0000840
xref: EMAPA:19252
xref: EV:0100077
xref: FMA:7201
xref: GAID:306
xref: galen:LargeIntestine
xref: MA:0000333
xref: MESH:A.03.492.411.495
xref: MIAA:0000046
xref: ncithesaurus:Large_Intestine
xref: OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA
xref: SCTID:181254001
xref: VHOG:0000054
xref: XAO:0000131
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000160 ! intestine
[Term]
id: UBERON:0000060
name: anatomical wall
alt_id: UBERON:0009915
def: "Anatomical organ component enclosing an organ cavity." [FMA:82482]
comment: merged FMA organ wall in to this class
synonym: "wall" EXACT []
synonym: "wall of organ" EXACT [FMA:82482]
xref: EMAPA:25036
xref: FMA:82482
xref: galen:Wall
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000061
name: anatomical structure
def: "Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [CARO:0000003]
subset: upper_level
synonym: "biological structure" EXACT []
xref: AAO:0010825
xref: AEO:0000003
xref: BILA:0000003
xref: CARO:0000003
xref: EHDAA2:0003003
xref: FBbt:00007001
xref: FMA:67135
xref: GAID:781
xref: HAO:0000003
xref: MA:0003000
xref: MESH:A.13
xref: SCTID:362889002
xref: TAO:0000037
xref: TGMA:0001823
xref: VHOG:0001759
xref: XAO:0003000
xref: ZFA:0000037
is_a: UBERON:0000465 ! material anatomical entity
[Term]
id: UBERON:0000062
name: organ
def: "Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]." [Wikipedia:Organ_(anatomy)]
comment: note that CARO does not include a generic 'organ' class, only simple and compound organ
xref: EFO:0000634
xref: FMA:67498
xref: MA:0003001
xref: ncithesaurus:Organ
xref: NIF_GrossAnatomy:birnlex_4
xref: OpenCyc:Mx4rv5XMb5wpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA
property_value: RO:0002161 NCBITaxon:110815
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000467 ! anatomical system
[Term]
id: UBERON:0000063
name: organ segment
def: "Organ region with one or more fixed or anchored fiat boundaries. Examples: artery, trunk of nerve, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyeball[FMA]." [FMA:86140]
synonym: "organ region with fixed fiat boundary" EXACT [FMA:86140]
synonym: "segment of organ" EXACT [FMA:86140]
xref: FMA:86140
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000064
name: organ part
def: "anatomical structure which has as its direct parts two or more types of tissue and is continuous with one or more anatomical structures likewise constituted by two or more portions of tissues distinct from those of their complement. Examples: osteon, cortical bone, neck of femur, bronchopulmonary segment, left lobe of liver, anterior right side of heart, interventricular branch of left coronary artery, right atrium, mitral valve, head of pancreas[FMA]." [FMA:82472]
subset: disjointness_axiom_removed
subset: upper_level
synonym: "cardinal organ part" EXACT []
xref: AAO:0011124
xref: EFO:0000635
xref: FMA:82472
xref: SCTID:91717005
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000062 ! organ
[Term]
id: UBERON:0000065
name: respiratory tract
def: "anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm]
xref: EHDAA2:0001606
xref: EHDAA:1568
xref: EHDAA:2219
xref: EMAPA:16737
xref: MESH:A.04
xref: OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA
xref: SCTID:361110005
xref: VHOG:0000393
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000925 ! endoderm
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0000066
name: fully formed stage
def: "The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both juvenile stage, and adult stage. " [UBERON:cjm]
synonym: "adult stage" BROAD []
synonym: "fully formed animal stage" EXACT []
synonym: "juvenile-adult stage" EXACT []
xref: BTO:0001043
xref: FBdv:00005369
xref: WBls:0000041
is_a: UBERON:0000092 ! post-embryonic stage
relationship: preceded_by UBERON:0000111 ! organogenesis stage
[Term]
id: UBERON:0000067
name: embryo stage part
def: "A stage that is part of the embryo stage." [UBERON:cjm]
synonym: "embryonic stage part" EXACT []
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068
intersection_of: UBERON:0000105 ! life cycle stage
intersection_of: part_of UBERON:0000068 ! embryo stage
relationship: part_of UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000068
name: embryo stage
def: "A life cycle stage that starts with fertilization and ends with the fully formed embryo." []
synonym: "embryogenesis" RELATED []
synonym: "embryonic stage" EXACT []
xref: EV:0300001
xref: FBdv:00005289
xref: OGES:000000
xref: OGES:000022
xref: SCTID:296280003
xref: XAO:1000012
is_a: UBERON:0000105 ! life cycle stage
disjoint_from: UBERON:0000092 ! post-embryonic stage
relationship: part_of UBERON:0000104 ! life cycle
[Term]
id: UBERON:0000069
name: larval stage
def: "a distinct juvenile stage many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [Wikipedia:Larva]
comment: It is a misunderstanding that the larval form always reflects the group's evolutionary history. It could be the case, but often the larval stage has evolved secondarily, as in insects. In these cases the larval form might differ more from the group's common origin than the adult form[WP]. Uberon includes clade-specific subclasses.
synonym: "ammocoete" NARROW SENSU [Wikipedia:Larva]
synonym: "ammocoete stage" NARROW SENSU [Wikipedia:Larva]
synonym: "bipinnaria" NARROW SENSU [Wikipedia:Larva]
synonym: "bipinnaria stage" NARROW SENSU [Wikipedia:Larva]
synonym: "caterpillar" NARROW SENSU [Wikipedia:Larva]
synonym: "caterpillar stage" NARROW SENSU [Wikipedia:Larva]
synonym: "glochidium" NARROW SENSU [Wikipedia:Larva]
synonym: "glochidium stage" NARROW SENSU [Wikipedia:Larva]
synonym: "grub" NARROW SENSU [Wikipedia:Larva]
synonym: "grub stage" NARROW SENSU [Wikipedia:Larva]
synonym: "larva" RELATED []
synonym: "larva stage" EXACT []
synonym: "leptocephalus" NARROW SENSU [Wikipedia:Larva]
synonym: "leptocephalus stage" NARROW SENSU [Wikipedia:Larva]
synonym: "maggot" NARROW SENSU [Wikipedia:Larva]
synonym: "maggot stage" NARROW SENSU [Wikipedia:Larva]
synonym: "metacestode" NARROW SENSU [BTO:0000859]
synonym: "naiad, nymph" NARROW SENSU [Wikipedia:Larva]
synonym: "naiad, nymph stage" NARROW SENSU [Wikipedia:Larva]
synonym: "nauplius" NARROW SENSU [Wikipedia:Larva]
synonym: "nauplius stage" NARROW SENSU [Wikipedia:Larva]
synonym: "nymph" NARROW SENSU [Wikipedia:Larva]
synonym: "nymph stage" NARROW SENSU [Wikipedia:Larva]
synonym: "planula" NARROW SENSU [Wikipedia:Larva]
synonym: "planula stage" NARROW SENSU [Wikipedia:Larva]
synonym: "tornaria" NARROW SENSU [NCBITaxon:10219]
synonym: "trochophore" NARROW SENSU [Wikipedia:Larva]
synonym: "trochophore stage" NARROW SENSU [Wikipedia:Larva]
synonym: "veliger" NARROW SENSU [Wikipedia:Larva]
synonym: "veliger stage" NARROW SENSU [Wikipedia:Larva]
synonym: "wriggler" NARROW SENSU [Wikipedia:Larva]
synonym: "wriggler stage" NARROW SENSU [Wikipedia:Larva]
synonym: "zoea" NARROW SENSU [Wikipedia:Larva]
synonym: "zoea stage" NARROW SENSU [Wikipedia:Larva]
xref: AEO:0000126
xref: BTO:0000915
xref: BTO:0000954
xref: EFO:0001303
xref: OGES:000008
property_value: RO:0002161 NCBITaxon:32524
is_a: UBERON:0000092 ! post-embryonic stage
relationship: directly_preceded_by UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000070
name: pupal stage
def: "A life stage of some insects undergoing transformation. The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago." [Wikipedia:Pupa]
synonym: "pupa stage" EXACT []
xref: FBdv:00005349
is_a: UBERON:0000092 ! post-embryonic stage
relationship: directly_preceded_by UBERON:0000069 ! larval stage
[Term]
id: UBERON:0000071
name: death stage
def: "End of the life of an organism." [XAO:0000437]
comment: AO notes - ncit:Death is an outcome
synonym: "death" EXACT []
xref: XAO:0000437
is_a: UBERON:0000105 ! life cycle stage
relationship: finishes UBERON:0000104 ! life cycle
relationship: part_of UBERON:0000104 ! life cycle
[Term]
id: UBERON:0000072
name: segment of respiratory tract
def: "An organ segment that is part of a respiratory tract [Obol]." [OBOL:automatic]
comment: Note that MA:0000434 has subclasses upper and lower, so it corresponds to a segment of the tract, rather than the tract as a whole
synonym: "respiratory tract" RELATED [MA:0000434]
xref: MA:0000434
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000065
intersection_of: UBERON:0000063 ! organ segment
intersection_of: part_of UBERON:0000065 ! respiratory tract
relationship: part_of UBERON:0000065 ! respiratory tract
[Term]
id: UBERON:0000073
name: regional part of nervous system
def: "An anatomical structure that is part of a nervous system [Obol]." [OBOL:automatic]
comment: grouping class
synonym: "part of nervous system" EXACT [NIF_GrossAnatomy:birnlex_1157]
xref: ncithesaurus:Nervous_System_Part
xref: NIF_GrossAnatomy:birnlex_1157
xref: SCTID:25087005
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001016
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001016 ! nervous system
relationship: part_of UBERON:0001016 ! nervous system
created_by: Melissa Haendel
creation_date: 2009-06-18T09:00:04Z
[Term]
id: UBERON:0000074
name: renal glomerulus
def: "A capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the vertebrate kidney[GO]." [MP:0005325, Wikipedia:Glomerulus]
comment: ZFA - The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes filters blood from the glomerular capillaries. TODO - split glomerulus and glomerular tuft? DONE. GUDMAP: 'Together, the Bowman’s capsule and the glomerulus comprise the definitive renal corpuscle.' - here the glomerulus is part of the capsule?
subset: vertebrate_core
synonym: "glomerular capillary tuft" RELATED [ZFA:0001288]
synonym: "glomerular tuft" RELATED []
synonym: "glomerulus" BROAD []
synonym: "glomerulus renis" RELATED LATIN [Wikipedia:Glomerulus]
synonym: "malphigian glomerulus" RELATED [BTO:0000530]
synonym: "renal corpuscle" RELATED []
xref: AAO:0010388
xref: BTO:0000530
xref: EFO:0003667
xref: EV:0100386
xref: FMA:15624
xref: http://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png
xref: MA:0001657
xref: MESH:A.05.810.453.736.520
xref: ncithesaurus:Glomerulus
xref: SCTID:362217000
xref: TAO:0001288
xref: XAO:0000146
xref: ZFA:0001288
property_value: UBPROP:0000001 "A tuft of capillaries found in a Bowman's capsule in which waste products are filtered from the blood and urine formation is initiated.[AAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
disjoint_from: UBERON:0001047 ! neural glomerulus
relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme
relationship: develops_from UBERON:0005749 ! glomerular tuft
relationship: part_of UBERON:0001229 ! renal corpuscle
relationship: surrounded_by UBERON:0001230 ! glomerular capsule
created_by: Melissa Haendel
creation_date: 2009-06-18T09:26:37Z
[Term]
id: UBERON:0000075
name: subdivision of skeletal system
alt_id: UBERON:0010322
def: "Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [UBERON:cjm, UBERONREF:0000003]
synonym: "skeletal system part" RELATED []
synonym: "skeletal system subdivision" EXACT [FMA:85544]
xref: FMA:85544
xref: galen:ComplexSkeletalStructure
xref: ncithesaurus:Skeletal_System_Part
xref: SCTID:118966000
is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision
relationship: part_of UBERON:0001434 ! skeletal system
[Term]
id: UBERON:0000076
name: external ectoderm
def: "The surface ectoderm (or external ectoderm forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis [WP,unvetted]." [Wikipedia:External_ectoderm]
comment: Editor note: merge with non-neural. In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube).
synonym: "surface ectoderm" EXACT []
xref: EHDAA2:0001968
xref: EHDAA:1494
xref: EHDAA:350
xref: EHDAA:4784
xref: EHDAA:4790
xref: EHDAA:4796
xref: EHDAA:7860
xref: EMAPA:16096
xref: EMAPA:16539
xref: FMA:87656
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/Ectoderm.png/200px-Ectoderm.png
xref: ncithesaurus:Surface_Ectoderm
is_a: UBERON:0000923 ! germ layer
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0000077
name: mixed endoderm/mesoderm-derived structure
def: "An anatomical structure that develops from the endoderm and the mesoderm." [UBERON:cjm]
comment: Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple
subset: grouping_class
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0000925
relationship: develops_from UBERON:0000926
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000925 ! endoderm
intersection_of: develops_from UBERON:0000926 ! mesoderm
relationship: develops_from UBERON:0000925 ! endoderm
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0000078
name: mixed ectoderm/mesoderm/endoderm-derived structure
def: "An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [UBERON:cjm]
comment: Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple
subset: grouping_class
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0000924
relationship: develops_from UBERON:0000925
relationship: develops_from UBERON:0000926
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000924 ! ectoderm
intersection_of: develops_from UBERON:0000925 ! endoderm
intersection_of: develops_from UBERON:0000926 ! mesoderm
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0000925 ! endoderm
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0000079
name: male reproductive system
def: "the organs associated with producing offspring in the gender that produces spermatozoa." [MP:0001145]
synonym: "genitalia of male organism" EXACT [OBOL:automatic]
synonym: "male genital organ" RELATED [BTO:0000082]
synonym: "male genital system" EXACT [FMA:45664]
synonym: "male genitalia" EXACT []
synonym: "male genitals" EXACT []
synonym: "male organism genitalia" EXACT [OBOL:automatic]
synonym: "male organism reproductive system" EXACT [OBOL:automatic]
synonym: "male reproductive tract" RELATED [MA:0000396]
synonym: "reproductive system of male organism" EXACT [OBOL:automatic]
synonym: "systema genitale masculinum" RELATED [BTO:0000082]
xref: BTO:0000082
xref: EFO:0000970
xref: EHDAA2:0001054
xref: EHDAA:8136
xref: EMAPA:17968
xref: EV:0100101
xref: FBbt:00004927
xref: FMA:45664
xref: GAID:386
xref: HAO:0000505
xref: MA:0000396
xref: MESH:A.05.360.444
xref: ncithesaurus:Male_Genitalia
xref: ncithesaurus:Male_Reproductive_System
xref: OpenCyc:Mx4rvViCepwpEbGdrcN5Y29ycA
xref: SCTID:361340001
xref: TGMA:0000634
xref: VHOG:0000725
xref: WBbt:0008423
xref: XAO:0000155
is_a: UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0003101
intersection_of: UBERON:0000990 ! reproductive system
intersection_of: part_of UBERON:0003101 ! male organism
disjoint_from: UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0003101 ! male organism
[Term]
id: UBERON:0000080
name: mesonephros
def: "In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the mesonephros will form the mature kidney[GO]. One of three excretory organs that develop in vertebrates. It serves as the main excretory organ of aquatic vertebrates and as a temporary kidney in higher vertebrates. composed of the mesonephric duct (also called the Wolffian duct), mesonephric tubules, and associated capillary tufts. A single tubule and its associated capillary tuft is called a mesonephric excretory unit; these units are similar in structure and function to nephrons of the adult kidney. The mesonephros is derived from intermediate mesoderm in the vertebrate embryo." [GO:0001823, Wikipedia:Mesonephros]
comment: By contrast to the pronephros, the histological features of the mesonephros, with its primitive glomeruli, suggest that it probably functions as a primitive kidney, and is involved in the production of much of the amniotic fluid. Within the two mesonephroi, one located on either side of the dorsal mesentery of the hindgut, a substantial number (in the region of about 40 or more) of cranio-caudally segmented mesonephric tubules are formed. It has, however, been suggested that only the most rostrally located 4-6 pairs of mesonephric tubules drain into the mesonephric portion of the nephric duct. This is now seen to extend along the length of the mesonephroi, being located towards their lateral sides. The mesonephros is also retained over a considerably longer period than the pronephros, but gradually undergoes regression in a cranio-caudal direction. While the rostral part displays clear evidence of regression its more caudal part appears to display evidence of functional activity. Within the medial part of the mesonephros, vesicles are formed, although no glomeruli are formed there in this species. It is, however, difficult to believe that the relatively enormous mesonephroi do not have an excretory role in the mouse, only serving as a base for gonadal differentiation. In the human embryo, the medial part of the mesonephric tubules enlarges, become invaginated by capillaries, and form glomeruli. These then take on an excretory role. In the mouse, the mesonephric ducts appear to be patent throughout their length[GUDMAP] comment: Taxon notes: The mesonephros persists and form the permanent kidneys in fishes and amphibians, but in reptiles, birds, and mammals, it atrophies and for the most part disappears rapidly as the permanent kidney (metanephros) begins to develop during the sixth or seventh week. By the beginning of the fifth month only the ducts and a few of the tubules of the mesonephros remain[WP]
subset: organ_slim
subset: vertebrate_core
synonym: "mesonephric kidney" EXACT [XAO:0000141]
synonym: "mesonephroi" EXACT PLURAL [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron]
synonym: "opisthonephros" RELATED [VHOG:0000038, XAO:0000141]
synonym: "opisto nephros" RELATED []
synonym: "opistonephros" RELATED [http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html]
synonym: "Wolffian body" EXACT [BTO:0001542, GOC:yaf, MESH:A.16.254.500, Wikipedia:Mesonephros]
xref: AAO:0010384
xref: BTO:0001542
xref: EFO:0000928
xref: EHDAA2:0001130
xref: EHDAA:1581
xref: EHDAA:5903
xref: EMAPA:16744
xref: EMAPA:17369
xref: EMAPA:27644
xref: FMA:72171
xref: GAID:1308
xref: http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray986.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ad/Gray986.png/200px-Gray986.png
xref: MESH:A.16.254.500
xref: ncithesaurus:Mesonephros
xref: SCTID:308799002
xref: TAO:0000529
xref: VHOG:0000038
xref: XAO:0000141
xref: ZFA:0000529
property_value: UBPROP:0000001 "Organ that is the definitive adult kidney. It replaces the earlier pronephros, which degenerates as the mesonephros becomes functional in feeding stage tadpoles.[AAO]" xsd:string
is_a: UBERON:0002113 ! kidney
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0002120 ! pronephros
[Term]
id: UBERON:0000081
name: metanephros
def: "In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine[GO]. During the fifth week of gestation, the mesonephric duct develops an outpouching, the ureteric bud, near its attachment to the cloaca. This bud, also called the metanephrogenic diverticulum, grows posteriorly and towards the head of the embryo. The elongated stalk of the ureteric bud, the metanephric duct, later forms the ureter. As the cranial end of the bud extends into the intermediate mesoderm, it undergoes a series of branchings to form the collecting duct system of the kidney. It also forms the major and minor calyces and the renal pelvis." [GO:0001656, Wikipedia:Metanephros#Metanephros]
comment: TODO check developmental relationships
subset: organ_slim
synonym: "definite kidney" RELATED [BTO:0001543]
synonym: "definitive kidney" RELATED [BTO:0001543]
synonym: "hind kidney" RELATED [BTO:0001543]
synonym: "metanephron" EXACT [BTO:0001543]
xref: BTO:0001543
xref: EHDAA2:0001137
xref: EHDAA:3089
xref: EHDAA:5911
xref: EMAPA:17207
xref: EMAPA:17373
xref: FMA:72172
xref: ncithesaurus:Metanephros
xref: SCTID:308797000
xref: VHOG:0000039
is_a: UBERON:0002113 ! kidney
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: developmentally_replaces UBERON:0000080 {source="ISBN:9780878932504"} ! mesonephros
relationship: develops_from UBERON:0003220 {evidence="definitional"} ! metanephric mesenchyme
relationship: develops_from UBERON:0005080 {source="GO"} ! metanephric ureteric bud
relationship: develops_from UBERON:0005753 ! caudal part of nephrogenic cord
[Term]
id: UBERON:0000082
name: adult mammalian kidney
is_a: UBERON:0002113 ! kidney
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0000081 ! metanephros
relationship: develops_from UBERON:0000084 ! ureteric bud
[Term]
id: UBERON:0000083
name: mesonephric tubule
def: "A mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]. Genital ridge that is next to the mesonephros[WP]." [Wikipedia:Mesonephric_tubules]
comment: TODO check
synonym: "tubuli mesonephrici" RELATED LATIN [Wikipedia:Mesonephric_tubules]
xref: AAO:0010389
xref: EHDAA2:0001134
xref: EMAPA:27588
xref: EMAPA:27659
xref: VHOG:0000500
xref: XAO:0000148
is_a: UBERON:0003914 ! epithelial tube
is_a: UBERON:0005103 ! mesonephric epithelium
is_a: UBERON:0006555 ! excretory tube
relationship: part_of UBERON:0000080
intersection_of: UBERON:0003914 ! epithelial tube
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0000084
name: ureteric bud
def: "a protrusion from the mesonephric duct during the development of the urinary and reproductive organs. It later develops into the adult kidney, except for the nephrons, which, in contrast, originate from the metanephric blastema[WP]. epithelial swelling on the Wolffian duct that elongates to invade the adjacent metanephric mesenchyme[MP]" [MP:0010979, PMID:19828308, Wikipedia:Ureteric_bud]
synonym: "diverticulum" RELATED [BTO:0001646]
synonym: "gemma ureterica; diverticulum metanephricum" RELATED LATIN [Wikipedia:Ureteric_bud]
synonym: "metanephric bud" RELATED [BTO:0001646]
synonym: "metanephric diverticulum" RELATED [Wikipedia:Metanephros#Metanephros]
xref: BTO:0001646
xref: EHDAA2:0002140
xref: EHDAA:3091
xref: EHDAA:5917
xref: EMAPA:17209
xref: EMAPA:17376
xref: ncithesaurus:Metanephric_Diverticulum
xref: SCTID:361528000
xref: VHOG:0000541
is_a: UBERON:0000083 ! mesonephric tubule
is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac
relationship: develops_from UBERON:0003074 {source="EHDAA2"} ! mesonephric duct
relationship: induced_by UBERON:0003220 {source="ISBN:9780878932504"} ! metanephric mesenchyme
relationship: part_of UBERON:0003074 ! mesonephric duct
[Term]
id: UBERON:0000085
name: morula
def: "An embryo at an early stage of embryonic development, consisting of cells (called blastomeres) in a solid ball contained within the zona pellucida[WP] The compacted embryo before cavity formation." [Wikipedia:Morula]
xref: BTO:0001508
xref: EHDAA2:0000005
xref: GAID:1295
xref: http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png
xref: MESH:A.16.254.270.550
xref: ncithesaurus:Morula
xref: SCTID:361474003
xref: XAO:1000029
is_a: UBERON:0000307 ! blastula
relationship: existence_starts_and_ends_during UBERON:0000108 ! blastula stage
relationship: surrounded_by UBERON:0000086 ! zona pellucida
[Term]
id: UBERON:0000086
name: zona pellucida
def: "A glycoprotein membrane surrounding the plasma membrane of an oocyte. It is a vital constitutive part of the latter, external but not extraneous to it. The zona pellucida first appears in multilaminar primary oocytes." [Wikipedia:Zona_pellucida]
subset: vertebrate_core
synonym: "oolemma" RELATED [BTO:0003135]
synonym: "pellucid zone" RELATED [BTO:0003135]
synonym: "striated membrane" RELATED [BTO:0003135]
synonym: "vitelline envelope" RELATED []
synonym: "vitelline membrane" RELATED []
synonym: "zona radiata" RELATED [BTO:0003135]
synonym: "zona striata" RELATED [BTO:0003135]
xref: BTO:0003135
xref: EHDAA2:0002220
xref: EHDAA:31
xref: EHDAA:62
xref: EMAPA:16035
xref: EMAPA:16049
xref: FMA:18674
xref: GAID:410
xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Gray3.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray3.png/200px-Gray3.png
xref: MA:0001715
xref: MESH:A.05.360.490.690.950
xref: ncithesaurus:Zona_Pellucida
xref: TAO:0001111
xref: VHOG:0000720
xref: ZFA:0001111
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000992 ! female gonad
[Term]
id: UBERON:0000087
name: inner cell mass
def: "Mass of cells inside the primordial embryo that will eventually give rise to the definitive structures of the fetus. This structure forms in the earliest steps of development, before implantation into the endometrium of the uterus has occurred. The ICM lies within the blastocoele (more correctly termed 'blastocyst cavity', as it is not strictly homologous to the blastocoele of anamniote vertebrates) and is entirely surrounded by the single layer of cells called trophoblast." [Wikipedia:Inner_cell_mass]
subset: early_development
synonym: "embryoblast" RELATED []
synonym: "embryoblastus; massa cellularis interna; pluriblastus senior" RELATED LATIN [Wikipedia:Inner_cell_mass]
synonym: "pluriblast" RELATED []
xref: EFO:0000547
xref: EHDAA2:0000830
xref: EHDAA:40
xref: EMAPA:16041
xref: FMA:86557
xref: http://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png
xref: ncithesaurus:Inner_Cell_Mass
xref: SCTID:361456007
xref: VHOG:0000742
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0000358 {source="Wikipedia"} ! blastocyst
relationship: surrounded_by UBERON:0000088 ! trophoblast
[Term]
id: UBERON:0000088
name: trophoblast
def: "Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg." [Wikipedia:Trophoblast]
comment: Development notes: The postimplantation derivatives of the trophectoderm, which make up most of the fetal part of the placenta[PMID:19829370]
subset: early_development
synonym: "trophoblast layer" RELATED [MP:0005031]
synonym: "trophoblastus; massa cellularis externa" RELATED LATIN [Wikipedia:Trophoblast]
synonym: "trophoderm" RELATED [BTO:0001079]
xref: BTO:0001079
xref: EV:0100120
xref: FMA:83029
xref: GAID:1152
xref: http://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png
xref: MESH:A.11.936
xref: ncithesaurus:Trophoblast
xref: SCTID:362839005
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000358 ! blastocyst
[Term]
id: UBERON:0000089
name: hypoblast
def: "The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm" [Wikipedia:Hypoblast, ZFIN:curator]
comment: this term groups together disparate structures with different relationships. TODO - consider relationship to UBERON:0000091
subset: early_development
subset: uberon_slim
subset: vertebrate_core
synonym: "hypoblastus" RELATED LATIN [Wikipedia:Hypoblast]
synonym: "mesendoderm" EXACT [ZFIN:ZDB-PUB-961014-576]
xref: AAO:0000229
xref: AAO:0010619
xref: BTO:0003953
xref: EFO:0001930
xref: http://upload.wikimedia.org/wikipedia/commons/0/02/Cell_differentiation_gastrula.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png
xref: MAT:0000418
xref: MIAA:0000418
xref: ncithesaurus:Hypoblast
xref: TAO:0000117
xref: VHOG:0001222
xref: XAO:0003044
xref: ZFA:0000117
property_value: UBPROP:0000001 "A primary germ layer that can give rise to both mesoderm and endoderm.[AAO]" xsd:string
property_value: UBPROP:0000001 "The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0004750 ! blastoderm
[Term]
id: UBERON:0000090
name: blastocele
def: "fluid-filled central region of a blastocyst. A blastocoele forms during embryogenesis when a zygote (a fertilized ovum) divides into many cells through mitosis." [Wikipedia:Blastocele]
subset: early_development
synonym: "blastocoele" EXACT []
synonym: "blastocoelic cavity" EXACT [EHDAA2:0000175]
synonym: "blastocyst cavity" EXACT []
synonym: "cleavage cavity" EXACT []
synonym: "segmentation cavity" EXACT []
xref: AAO:0010433
xref: EHDAA2:0000175
xref: EHDAA:50
xref: EMAPA:16044
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Blastocyst.gif/200px-Blastocyst.gif
xref: SCTID:361455006
xref: VHOG:0000811
xref: XAO:0000294
property_value: "dubious_for_taxon" NCBITaxon:7955
property_value: UBPROP:0000001 "A blastocoel forms during embryogenesis when a zygote (a fertilized ovum) divides into many cells through mitosis. The blastocoel is the cavity of the blastula, a closed space which is invaded by early mesenchyme and later obliterated by the enlarging archenteron.[AAO]" xsd:string
is_a: UBERON:0002553 ! anatomical cavity
relationship: surrounded_by UBERON:0002532 ! epiblast
[Term]
id: UBERON:0000091
name: bilaminar disc
def: "the epiblast and the hypoblast, evolved from the embryoblast" [Wikipedia:Bilaminar_disc]
subset: early_development
synonym: "bilaminary embryonic disc" EXACT []
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Gray21.png/200px-Gray21.png
xref: ncithesaurus:Bilaminar_Embryonic_Disc
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0000087 ! inner cell mass
[Term]
id: UBERON:0000092
name: post-embryonic stage
def: "stage succeeding embryo, including mature structure" [UBERON:cjm]
synonym: "postembryonic" RELATED []
synonym: "postembryonic stage" EXACT []
xref: OGES:000010
xref: OGES:000014
xref: OGES:000024
xref: WBls:0000022
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000104 ! life cycle
relationship: preceded_by UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000093
name: sulcus
def: "a depression or fissure in the surface of an organ." [Wikipedia:Sulcus_(anatomy)]
is_a: UBERON:0000464 ! anatomical space
created_by: cjm
creation_date: 2009-04-09T06:23:22Z
[Term]
id: UBERON:0000094
name: membrane organ
def: "Nonparenchymatous organ that primarily consists of dense connective tissue organized into a sheet which interconnects two or more organs, separates two or more body spaces from one another, or surrounds an organ or body part. Examples: interosseous membrane of forearm, obturator membrane, tympanic membrane, fibrous pericardium, fascia lata, dura mater. [FMA]" [FMA:7145]
synonym: "membrane of organ" EXACT []
xref: FMA:7145
is_a: UBERON:0000062 ! organ
created_by: cjm
creation_date: 2009-07-30T05:19:13Z
[Term]
id: UBERON:0000095
name: cardiac neural crest
def: "portion of neural crest that develops from the dorsal neural tube. It overlaps the vagal neural crest and migrates to populate the pharyngeal arches 3, 4 and 6 (producing structures in the head) and to the heart, forming connective tissue that separates the great vessels of the heart. [Wikipedia]" [Wikipedia:Cardiac_neural_crest]
comment: AO notes - ZFA treats this as a subtype of NC.
subset: vertebrate_core
synonym: "cardiac neural crest complex" RELATED [Wikipedia:Cardiac_neural_crest]
synonym: "complexus cristae neuralis cardiacus" RELATED [Wikipedia:Cardiac_neural_crest]
xref: TAO:0002173
xref: XAO:0004190
xref: ZFA:0001648
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: overlaps UBERON:0005428 {source="Wikipedia"} ! vagal neural crest
relationship: part_of UBERON:0002342 ! neural crest
created_by: cjm
creation_date: 2009-07-30T07:57:38Z
[Term]
id: UBERON:0000100
name: blastopore
def: "Structure around the opening into the archenteron during the embryonic stages of an organism. The distinction between protostomes and deuterostomes is based on the direction in which the mouth (stoma) develops in relation to the blastopore." [Wikipedia:Blastopore]
comment: In protostome development, the first opening in development, the blastopore, becomes the animal's mouth; In deuterostome development, the blastopore becomes the animal's anus
subset: early_development
subset: metazoa_core
xref: AAO:0000045
xref: BTO:0001695
xref: XAO:0000208
property_value: "dubious_for_taxon" NCBITaxon:7955
property_value: "homologous_to" FBbt:00000123
property_value: UBPROP:0000001 "A slit-like invagination on the dorsal side of the blastula surface of the embryo where the mesoderm and endoderm move inside the embryo at gatrulation.[AAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0004735 ! archenteron
[Term]
id: UBERON:0000101
name: lobe of lung
def: "A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO]
synonym: "lung lobe" EXACT []
synonym: "pulminory lobe" EXACT []
synonym: "pulmonary lobe" EXACT [FMA:7311]
xref: FMA:7311
xref: galen:LobeOfLung
xref: ncithesaurus:Lung_Lobe
xref: OpenCyc:Mx4rvo6-vpwpEbGdrcN5Y29ycA
xref: SCTID:245524004
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0000102
name: lung vasculature
def: "The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]." [GOC:GO]
synonym: "lung vascular network" EXACT [OBOL:automatic]
synonym: "pulmonary vasculature" EXACT [FMA:73750]
synonym: "vascular network of lung" EXACT [OBOL:automatic]
synonym: "vasculature of lung" EXACT [OBOL:automatic]
xref: FMA:73750
is_a: UBERON:0002201 ! vasculature of trunk
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0006876 ! vasculature of organ
relationship: part_of UBERON:0002048
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0000103
name: life cycle stage boundary
def: "Instant starting or ending a life cycle stage. These can be arbitrary/fiat." [UBERON:cjm]
subset: upper_level
synonym: "life cycle stage transition event" EXACT []
synonym: "life cycle stage transition instant" EXACT []
xref: span:ProcessBoundary
is_a: UBERON:0000000 ! processual entity
disjoint_from: UBERON:0000105 ! life cycle stage
[Term]
id: UBERON:0000104
name: life cycle
def: "An entire span of an organism's life, commencing with the zygote stage and ending in the death of the organism." [UBERON:cjm]
subset: upper_level
synonym: "life" EXACT []
synonym: "lifespan" EXACT []
xref: FBdv_root:00000000
xref: ncithesaurus:Life
xref: OGES:000011
is_a: UBERON:0000105 ! life cycle stage
[Term]
id: UBERON:0000105
name: life cycle stage
def: "A spatiotemporal region encompassing some part of the life cycle of an organism." [UBERON:cjm]
subset: upper_level
synonym: "developmental stage" EXACT []
synonym: "stage" NARROW []
xref: BILS:0000105
xref: EFO:0000399
xref: ncithesaurus:Developmental_Stage
xref: WBls:0000002
xref: XAO:1000000
xref: ZFS:0100000
is_a: UBERON:0000000 ! processual entity
relationship: has_end UBERON:0000103 ! life cycle stage boundary
relationship: has_start UBERON:0000103 ! life cycle stage boundary
[Term]
id: UBERON:0000106
name: zygote stage
def: "A stage at which the organism is a single cell produced by means of sexual reproduction." [Wikipedia:Zygote]
synonym: "1-cell stage" EXACT []
synonym: "fertilized egg stage" EXACT [BTO:0000854]
synonym: "one cell stage" EXACT []
synonym: "zygotum" RELATED LATIN [Wikipedia:Zygote]
xref: BILS:0000106
xref: EHDAA:27
xref: EMAPA:16033
xref: VHOG:0000745
xref: XAO:1000001
xref: ZFS:0000001
is_a: UBERON:0000067 ! embryo stage part
relationship: part_of UBERON:0000068 ! embryo stage
relationship: starts UBERON:0000104 ! life cycle
[Term]
id: UBERON:0000107
name: cleavage stage
def: "The first few specialized divisions of an activated animal egg; Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula." [GO:0040016, Wikipedia:Cleavage_(embryo)]
xref: BILS:0000107
xref: EFO:0001290
xref: MESH:A.16.254.270
xref: OGES:000015
xref: OGES:000020
xref: XAO:1000004
is_a: UBERON:0000067 ! embryo stage part
relationship: directly_preceded_by UBERON:0000106 ! zygote stage
relationship: part_of UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000108
name: blastula stage
def: "An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula]
xref: BILS:0000108
xref: EFO:0001282
xref: GAID:1294
xref: http://upload.wikimedia.org/wikipedia/commons/c/c6/Blastulation.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png
xref: OGES:000003
xref: OGES:000016
xref: OGES:000021
xref: OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg
xref: XAO:1000003
is_a: UBERON:0000067 ! embryo stage part
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000107 ! cleavage stage
[Term]
id: UBERON:0000109
name: gastrula stage
def: "A stage defined by complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm." [GO:0007369]
xref: BILS:0000109
xref: EFO:0001296
xref: FBdv:00005317
xref: OGES:000004
xref: OGES:000019
xref: XAO:1000005
is_a: UBERON:0000067 ! embryo stage part
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000108 ! blastula stage
[Term]
id: UBERON:0000110
name: neurula stage
def: "Staged defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system." [GO:0001841]
xref: BILS:0000110
xref: XAO:1000006
is_a: UBERON:0000067 ! embryo stage part
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000109 ! gastrula stage
[Term]
id: UBERON:0000111
name: organogenesis stage
def: "A stage at which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism." [Wikipedia:Organogenesis]
synonym: "segmentation stage" RELATED []
xref: BILS:0000111
xref: OGES:000005
xref: OGES:000032
is_a: UBERON:0000067 ! embryo stage part
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000110 ! neurula stage
[Term]
id: UBERON:0000112
name: juvenile stage
def: "The stage of being a sexually immature adult animal." [XAO:1000010]
xref: BILS:0000112
xref: BTO:0002168
xref: EFO:0001300
xref: EV:0300051
xref: OGES:000009
xref: XAO:1000010
xref: ZFS:0000042
xref: ZFS:0000043
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000066 ! fully formed stage
[Term]
id: UBERON:0000113
name: post-juvenile adult stage
def: "The stage of being a sexually mature adult animal." [UBERON:cjm]
synonym: "adult stage" BROAD []
xref: BILS:0000113
xref: BTO:0001043
xref: EV:0300064
xref: EV:0300070
xref: MIAA:0000403
xref: OGES:000026
xref: OGES:000027
xref: XAO:1000009
xref: ZFS:0000044
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000066 ! fully formed stage
relationship: preceded_by UBERON:0000112 ! juvenile stage
[Term]
id: UBERON:0000114
name: lung connective tissue
def: "A portion of connective tissue that is part of a lung [Obol]." [OBOL:automatic]
synonym: "connective tissue of lung" EXACT [OBOL:automatic]
synonym: "lung interstitial tissue" RELATED [MA:0001782]
synonym: "lung portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lung textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lung" EXACT [OBOL:automatic]
synonym: "textus connectivus of lung" EXACT [OBOL:automatic]
xref: MA:0001782
xref: SCTID:201609008
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0003593 ! thoracic cavity connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002048
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0000115
name: lung epithelium
def: "the epithelial layer of the lung." [MP:0006382]
synonym: "epithelial tissue of lung" EXACT [OBOL:automatic]
synonym: "epithelium of lung" EXACT [OBOL:automatic]
synonym: "lung epithelial tissue" EXACT [OBOL:automatic]
synonym: "pulmonary epithelium" RELATED [BTO:0001653]
xref: BTO:0001653
xref: MA:0001783
is_a: UBERON:0004802 ! respiratory tract epithelium
relationship: part_of UBERON:0002048
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002048 ! lung
relationship: develops_from UBERON:0001041 ! foregut
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0000116
name: lung saccule
def: "Primitive gas exchange portion of the lung composed of type I and type II cells[GO]." [GO:0060430]
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002299 {source="GO"} ! alveolus of lung
[Term]
id: UBERON:0000117
name: respiratory tube
def: "A tube in the respiratory tract." [GO:0030323]
is_a: UBERON:0000025 ! tube
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000065
intersection_of: UBERON:0000025 ! tube
intersection_of: part_of UBERON:0000065 ! respiratory tract
relationship: part_of UBERON:0000065 ! respiratory tract
[Term]
id: UBERON:0000118
name: lung bud
def: "Structure derived from foregut that becomes a lung." [GO:0060431, Wikipedia:Lung_buds]
synonym: "lung bud" RELATED PLURAL []
synonym: "primary lung bud" RELATED [GO:0060572]
synonym: "respiratory diverticulum" RELATED [Wikipedia:Lung_buds]
xref: BTO:0001643
xref: EHDAA2:0004089
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Gray948.png/200px-Gray948.png
xref: ncithesaurus:Primary_Bronchial_Bud
xref: ncithesaurus:Respiratory_Diverticulum
xref: SCTID:361427007
is_a: UBERON:0005153 {source="GO:0060441"} ! epithelial bud
is_a: UBERON:0005911 ! endo-epithelium
relationship: adjacent_to UBERON:0004872 ! splanchnic layer of lateral plate mesoderm
relationship: develops_from UBERON:0005597 ! lung primordium
relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium
[Term]
id: UBERON:0000119
name: cell layer
def: "Portion of tissue, that consists of one or more layers of cells connected to each other by cell junctions" [UBERON:cjm]
synonym: "cell sheath" RELATED []
synonym: "layer of cells" EXACT []
is_a: UBERON:0000479 ! tissue
[Term]
id: UBERON:0000120
name: blood brain barrier
def: "Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions." [DOI:10.1002/glia.20642, Wikipedia:Blood-brain_barrier]
synonym: "BBB" RELATED []
synonym: "blood-brain barrier" EXACT []
xref: ncithesaurus:Blood-Brain_Barrier
is_a: UBERON:0000119 ! cell layer
relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid
relationship: adjacent_to UBERON:0000955 ! brain
[Term]
id: UBERON:0000121
name: perineurium
def: "Connective tissue surrounding a fascicle." [Wikipedia:Perineurium]
xref: BTO:0003153
xref: FMA:52585
xref: http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray636.png/200px-Gray636.png
xref: ncithesaurus:Perineurium
xref: NIF_GrossAnatomy:nlx_anat_090205
xref: SCTID:362299001
is_a: UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0001019 ! fascicle
[Term]
id: UBERON:0000122
name: neuron projection bundle
alt_id: UBERON:0005163
def: "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [CARO:0001001, FBbt:00005099, FBC:DOS]
synonym: "funiculus" EXACT []
synonym: "nerve fiber bundle" EXACT [FBbt:00005099]
synonym: "neural fiber bundle" EXACT []
xref: CARO:0001001
xref: FBbt:00005099
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005162 ! multi cell component structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0000123
name: endoneurium
def: "a layer of delicate connective tissue that encloses the myelin sheath of a nerve fiber within a funiculus." [Wikipedia:Endodeurium]
xref: FMA:52586
xref: ncithesaurus:Endoneurium
xref: NIF_GrossAnatomy:nlx_anat_090202
xref: SCTID:15931004
is_a: UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0001021 ! nerve
[Term]
id: UBERON:0000124
name: epineurium
def: "outermost layer of connective tissue surrounding a peripheral nerve. It includes the blood vessels supplying the nerve. It consists of adipose tissue and fibrocollagenous tissues." [Wikipedia:Epineurium]
xref: BTO:0003154
xref: FMA:12234
xref: http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray636.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray636.png/200px-Gray636.png
xref: ncithesaurus:Epineurium
xref: NIF_GrossAnatomy:nlx_anat_090203
xref: SCTID:64482002
is_a: UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0002003 ! peripheral nerve
[Term]
id: UBERON:0000125
name: neural nucleus
def: "Anatomical structure consisting of a discrete aggregate of neuronal soma[GO]." [GO:0048857, GO_REF:0000021, Wikipedia:Nucleus_(neuroanatomy)]
comment: do not include NIF_Subcellular:sao1702920020 Nucleus. Proposed CUMBO def from MM: A subcortical part of the nervous system consisting of a relatively compact group of cells that is distinguishable histologically that share a commonality of cytoarchitecture, chemoarchitecturel and connectivity. (comments: I put in "subcortical" because I don't think we consider either the cerebellar cortex or cerebral cortex to be nuclei. Some people distinguish between a nucleus and a laminar structure (see Wikipedia definition). However, there are structures identified as nuclei that are laminar, e.g., lateral geniculate nucleus, although they are not laminated in all species. Also, I put in "relatively compact" and "distiguishable by histology" because we have groups of cells, e.g., cholinergic cell groups, doparminergic cell groups that are related on the 3 criteria but which we don't tend to consider nuclei because they don't occupy an easily defined territory. But all is open to debate.
synonym: "neuraxis nucleus" EXACT [FMA:83686]
synonym: "neuronal nucleus" EXACT [AEO:0000136]
synonym: "nucleus" BROAD []
synonym: "nucleus of neuraxis" RELATED []
xref: AEO:0000136
xref: FMA:83686
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0000126
name: cranial nerve nucleus
def: "collection of neurons (gray matter) in the brain stem that is associated with one or more cranial nerves." [Wikipedia:Cranial_nerve_nucleus]
synonym: "cranial neural nucleus" EXACT [FMA:54501]
synonym: "nucleus nervi cranialis" RELATED LATIN [Wikipedia:Cranial_nerve_nucleus]
synonym: "nucleus of cranial nerve" EXACT []
xref: FMA:54501
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: SCTID:280160003
is_a: UBERON:0002308 ! nucleus of brain
relationship: overlaps UBERON:0001785
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: overlaps UBERON:0001785 ! cranial nerve
relationship: overlaps UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0000127
name: facial nucleus
comment: FMA has 3 subclasses - left, right and motor nucleus of facial nerve, but no defs. It's not clear how facial nucleus is distinct from facial motor nucleus.
synonym: "facial nerve nucleus" EXACT []
synonym: "facial VII motor nucleus" RELATED [MA:0001014]
synonym: "facial VII nucleus" EXACT [MA:0001014]
synonym: "nucleus of facial nerve" EXACT [FMA:54572]
xref: BM:Pons-VII
xref: EHDAA2:0004638
xref: EV:0100267
xref: FMA:54572
xref: MA:0001014
xref: ncithesaurus:Facial_Nerve_Nucleus
xref: SCTID:280166009
xref: VHOG:0001412
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: develops_from UBERON:0010123 {evidence="definitional"} ! future facial nucleus
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0000128
name: olivary body
def: "prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei" [Wikipedia:Olivary_body]
synonym: "oliva" RELATED LATIN [Wikipedia:Olivary_body]
synonym: "olive" RELATED []
synonym: "olive body" EXACT []
xref: BTO:0002299
xref: http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray679.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray679.png/200px-Gray679.png
xref: SCTID:279293003
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0000130
name: transverse foramen
def: "Foramen that pierces the transverse processes of the seven cervical vertebrae. In the upper six vertebrae, the foramen gives passage to the vertebral artery, vertebral vein, and a plexus of sympathetic nerves. The seventh foramen lacks the artery, but contains the vein and sympathetic nerves." [Wikipedia:Transverse_foramen]
synonym: "foramen transversarium" EXACT [Wikipedia:Transverse_foramen]
synonym: "foramen transversarium" RELATED LATIN [Wikipedia:Transverse_foramen]
synonym: "foramen transversarium of cervical vertebra" EXACT [FMA:23998]
synonym: "transverse foramen of cervical vertebra" EXACT [FMA:23997]
xref: FMA:23997
xref: http://upload.wikimedia.org/wikipedia/commons/3/3c/Gray84.png
xref: SCTID:280735005
is_a: UBERON:0004111 {source="FMA"} ! anatomical conduit
relationship: surrounded_by UBERON:0001077 ! transverse process of vertebra
[Term]
id: UBERON:0000144
name: trochlea of humerus
def: "The medial portion of the articular surface of the humerus is named the trochlea, and presents a deep depression between two well-marked borders; it is convex from before backward, concave from side to side, and occupies the anterior, lower, and posterior parts of the extremity. It is directly inferior to the most prominent anterior humeral fossia, the Coronoid fossia. It articulates with the ulna." [Wikipedia:Trochlea_of_humerus]
synonym: "humeral trochlea" EXACT [FMA:23370]
xref: FMA:23370
xref: http://upload.wikimedia.org/wikipedia/commons/4/4b/Trochleahumeri.png
xref: SCTID:282817004
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0004404 ! distal epiphysis of humerus
[Term]
id: UBERON:0000151
name: pectoral fin
def: "The paired pectoral fins are located on each side, usually just behind the operculum, and are homologous to the forelimbs of tetrapods." [Wikipedia:Pectoral_fin#Fins]
comment: check definition of limb such that is excludes fins. Note the GO includes pectoral and pelvic fins as types of limbs. The Actinopterygii (ray finned fish) pectoral and pelvic fins aren't homologous as fore- or hindlimbs to those of tetrapods, whereas those of the Sarcopterygii (lobe finned fish) are in fact homologous.
xref: BTO:0004653
xref: SCTID:416982006
xref: TAO:0001161
xref: VSAO:0000147
xref: ZFA:0001161
property_value: UBPROP:0000001 "Paired fin that is located in the thoracic region of the body.[TAO]" xsd:string
property_value: UBPROP:0000001 "Paired fin that is located in the thoracic region of the body.[VSAO]" xsd:string
is_a: UBERON:0002534 ! paired fin
is_a: UBERON:0004710 {is_entailed="true"} ! pectoral appendage
relationship: part_of UBERON:0010708
intersection_of: UBERON:0002534 ! paired fin
intersection_of: part_of UBERON:0010708 ! pectoral complex
relationship: develops_from UBERON:0005419 ! forelimb/pectoral fin bud
relationship: part_of UBERON:0010708 ! pectoral complex
[Term]
id: UBERON:0000152
name: pelvic fin
def: "The paired pelvic or ventral fins are located ventrally below the pectoral fins. They are homologous to the hindlimbs of tetrapods. The pelvic fin assists the fish in going up or down through the water, turning sharply, and stopping quickly." [Wikipedia:Pectoral_fin#Fins]
comment: check definition of limb such that is excludes fins. Note the GO includes pectoral and pelvic fins as types of limbs.
xref: BTO:0004651
xref: EFO:0003644
xref: TAO:0001184
xref: VSAO:0000129
xref: ZFA:0001184
property_value: UBPROP:0000001 "Paired fin located in the abdominal position of the body.[TAO]" xsd:string
property_value: UBPROP:0000001 "Paired fin located in the abdominal position of the body.[VSAO]" xsd:string
is_a: UBERON:0002534 ! paired fin
is_a: UBERON:0004709 {is_entailed="true"} ! pelvic appendage
relationship: part_of UBERON:0010709
intersection_of: UBERON:0002534 ! paired fin
intersection_of: part_of UBERON:0010709 ! pelvic complex
relationship: develops_from UBERON:0005420 ! hindlimb/pelvic fin bud
relationship: part_of UBERON:0010709 ! pelvic complex
[Term]
id: UBERON:0000153
name: anterior region of body
is_a: UBERON:0000475 ! organism subdivision
relationship: anterior_to UBERON:0000154 ! posterior region of body
[Term]
id: UBERON:0000154
name: posterior region of body
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000155
name: theca cell layer
def: "A layer of the ovarian follicles. They appear as the follicles become tertiary follicles. The theca folliculi are responsible for the production of testosterone from androstenedione in females, and indirectly the production of estrogens by supplying the neighboring granulosa cells with androstenedione that can then be used as a substrate for aromatase." [Wikipedia:Theca_of_follicle]
subset: vertebrate_core
synonym: "layer of theca cells" EXACT []
synonym: "theca cell layer of ovarian follicle" EXACT []
synonym: "theca folliculi" RELATED []
synonym: "theca folliculi" RELATED LATIN [Wikipedia:Theca_of_follicle]
synonym: "theca of follicle" EXACT []
synonym: "thecal cell layer" EXACT [ZFA:0001113]
xref: BTO:0002853
xref: EFO:0003629
xref: FMA:18656
xref: SCTID:361385000
xref: TAO:0001113
xref: ZFA:0001113
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001305 ! ovarian follicle
[Term]
id: UBERON:0000156
name: theca externa
alt_id: UBERON:0005182
def: "The theca externa is the outer layers of the theca folliculi. It contains abundant collagen and is mainly supportive." [Wikipedia:Theca_externa]
synonym: "external coat of theca folliculi" RELATED [BTO:0002852]
synonym: "ovary theca externa" EXACT [MA:0001713]
synonym: "theca externa (folliculus ovaricus tertiarius)" EXACT [FMA:18657]
synonym: "tunica externa of theca folliculi" EXACT [FMA:18657]
synonym: "tunica externa thecae folliculi" RELATED [BTO:0002852]
synonym: "tunica externa thecae folliculi" RELATED LATIN [Wikipedia:Theca_externa]
xref: BTO:0002852
xref: FMA:18657
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Mature_Graffian_follicle.jpg/200px-Mature_Graffian_follicle.jpg
xref: MA:0001713
xref: SCTID:258767003
is_a: UBERON:0000158 ! membranous layer
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000155 ! theca cell layer
relationship: surrounds UBERON:0000157 ! theca interna
[Term]
id: UBERON:0000157
name: theca interna
alt_id: UBERON:0005183
def: "Theca interna cells express receptors for luteinizing hormone, which when activated will stimulate the production of androstenedione from cholesterol by the enzyme desmolase. Androstenedione ultimately gives the granulosa cells the precursor substrate for estrogen manufacturing." [Wikipedia:Theca_externa#Theca_interna]
synonym: "internal coat of capsule of graafian follicle" RELATED [BTO:0002851]
synonym: "ovary theca interna" EXACT [MA:0001714]
synonym: "theca interna (folliculus ovaricus tertiarius)" EXACT [FMA:18658]
synonym: "tunica interna of theca folliculi" EXACT [FMA:18658]
synonym: "tunica interna thecae folliculi" RELATED [BTO:0002851]
xref: BTO:0002851
xref: FMA:18658
xref: MA:0001714
xref: SCTID:258869006
is_a: UBERON:0000158 ! membranous layer
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000155 ! theca cell layer
[Term]
id: UBERON:0000158
name: membranous layer
synonym: "membranous organ component" EXACT [FMA:82500]
xref: FMA:82500
is_a: UBERON:0004923 ! organ component layer
[Term]
id: UBERON:0000159
name: anal canal
def: "The terminal part of the large intestine, continuous proximally with the rectum and distally terminates with the anus." [Wikipedia:Anal_canal]
comment: Editor notes: requires alignment with EHDAA2 and complete developmental relationships
subset: uberon_slim
synonym: "anal canal" EXACT []
synonym: "anal canal viewed anatomically" EXACT []
synonym: "anal pad" RELATED []
synonym: "anatomical anal canal" EXACT []
synonym: "anus" RELATED []
synonym: "canalis analis" RELATED LATIN [Wikipedia:Anal_canal]
synonym: "canalis analis" RELATED [BTO:0001978]
synonym: "cloaca" RELATED []
synonym: "cloacal chamber" RELATED []
synonym: "mesenteron" RELATED []
synonym: "pars analis recti" RELATED [BTO:0001978]
xref: BTO:0001978
xref: EMAPA:18256
xref: FMA:15703
xref: galen:AnalCanal
xref: http://upload.wikimedia.org/wikipedia/commons/1/17/Gray1078.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray1078.png/200px-Gray1078.png
xref: MA:0000330
xref: ncithesaurus:Anal_Canal
xref: SCTID:245438008
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: continuous_with UBERON:0001052 ! rectum
relationship: continuous_with UBERON:0001245 ! anus
relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! skin basal layer
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0000160
name: intestine
def: "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, Wikipedia:Intestine]
comment: MA also has a class MA:0001524 bowel, not clear how this is different
subset: uberon_slim
subset: vertebrate_core
synonym: "bowel" EXACT []
xref: AAO:0000246
xref: ANISEED:1235303
xref: BTO:0000648
xref: EFO:0000834
xref: EV:0100071
xref: FMA:7199
xref: GAID:295
xref: galen:Intestine
xref: MA:0000328
xref: MA:0001524
xref: MESH:A.03.492.411
xref: MIAA:0000043
xref: ncithesaurus:Intestine
xref: SCTID:256876008
xref: TAO:0001338
xref: VHOG:0000056
xref: WBbt:0005772
xref: XAO:0000129
xref: ZFA:0001338
property_value: UBPROP:0000001 "Portion of the alimentary canal bounded anteriorly by the pyloric sphincter and posteriorly by the cloacal sphincter.[AAO]" xsd:string
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0005409 ! gastrointestinal system
[Term]
id: UBERON:0000161
name: orifice
def: "Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis[FMA,modified]." [FMA:3724]
comment: in FMA, this is an anatomical conduit *space*, rather than anatomical conduit
subset: upper_ontology_conflict
synonym: "anatomical orifice" EXACT [FMA:3724]
synonym: "anatomical ostium" EXACT [FMA:3724]
synonym: "hilum" NARROW []
xref: FMA:3724
xref: SCTID:91837002
is_a: UBERON:0004111 ! anatomical conduit
[Term]
id: UBERON:0000162
name: cloaca
def: "Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca]
comment: Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]. We deliberately exclude the wbbt class here, but may in future have a grouping class
synonym: "cloacal chamber" RELATED []
synonym: "vent" RELATED []
xref: AAO:0000095
xref: GAID:1206
xref: MESH:A.13.223
xref: ncithesaurus:Cloaca
xref: SCTID:362857006
xref: TAO:0000330
xref: VHOG:0001186
xref: XAO:0000244
xref: ZFA:0000330
property_value: UBPROP:0000001 "Anatomical structure which is the common receptacle for the alimentary canal, Wolffian ducts, oviducts, and the bladder.[AAO]" xsd:string
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000161 ! orifice
relationship: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0004122 ! genitourinary system
[Term]
id: UBERON:0000163
name: embryonic cloaca
def: "Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
comment: compare UBERON:0000162 cloaca
synonym: "cloaca" RELATED SENSU []
xref: EHDAA2:0000256
xref: EHDAA:4895
xref: EMAPA:27573
xref: EMAPA:27638
is_a: UBERON:0000162 ! cloaca
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
relationship: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0000164
name: primitive urogenital sinus
def: "Part of the human body only present in the development of the urinary and reproductive organs. It is the ventral part of the cloaca, formed after the cloaca separates from the rectum. It eventually becomes, among other things, the bladder[WP]. ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females[MP]." [Wikipedia:Definitive_urogenital_sinus]
comment: Note that the term "urogenital sinus" may refer to the primitive urogenital sinus present as a transient developmental structure in most mammals or it may refer to a condition in which an unseptated cloaca persists in animals longer than normal[MP]
synonym: "fetal UGS" EXACT [PMID:18977204]
synonym: "UGS" EXACT [MP:0010116]
synonym: "urogenital sinus" EXACT [MP:0010116]
xref: EHDAA2:0004060
xref: EHDAA:5029
xref: EHDAA:5919
xref: EMAPA:17211
xref: EMAPA:17379
xref: http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png
xref: ncithesaurus:Urogenital_Sinus
xref: SCTID:50961009
xref: VHOG:0000414
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
relationship: part_of UBERON:0000163 ! embryonic cloaca
relationship: part_of UBERON:0001008 {source="EHDAA2"} ! excretory system
[Term]
id: UBERON:0000165
name: mouth
def: "First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum" [Wikipedia:Mouth]
comment: TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract
subset: major_organ
subset: uberon_slim
subset: vertebrate_core
synonym: "adult mouth" EXACT []
synonym: "cavitas oris" RELATED [BTO:0001090]
synonym: "cavum oris" RELATED [BTO:0001090]
synonym: "mouth cavity" RELATED [BTO:0001090]
synonym: "oral vestibule" RELATED [BTO:0001090]
synonym: "os, cavital oralis" RELATED LATIN [Wikipedia:Mouth]
synonym: "regio oralis" EXACT [FMA:49184, FMA:TA]
synonym: "rima oris" RELATED [BTO:0001090]
synonym: "stoma" RELATED []
synonym: "vestibule of mouth" RELATED [BTO:0001090]
synonym: "vestibulum oris" RELATED [BTO:0001090]
xref: AAO:0010355
xref: BTO:0001090
xref: EFO:0000825
xref: FBbt:00003126
xref: FMA:49184
xref: GAID:75
xref: galen:Mouth
xref: http://purl.obolibrary.org/obo/uberon/images/lamprey_sucker_rosava_3238889218.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/0/06/Mouth_illustration-Otis_Archives.jpg/180px-Mouth_illustration-Otis_Archives.jpg
xref: MA:0002474
xref: MAT:0000038
xref: MESH:A.01.456.505.631
xref: MIAA:0000038
xref: OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA
xref: SCTID:21082005
xref: TADS:0000040
xref: TAO:0000547
xref: TGMA:0000131
xref: VHOG:0000812
xref: XAO:0003029
xref: ZFA:0000547
property_value: UBPROP:0000001 "Cavity in which food is initially ingested and generally contains teeth, tongue and glands.[AAO]" xsd:string
is_a: UBERON:0001444 ! subdivision of head
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0000930 ! stomodeum
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0000166
name: oral opening
def: "The opening of the head through which food passes into the body." [NLM:mouth]
comment: note MA includes as parts of 'oral region' the tongue, tonsils, etc, so an equivalence to the oral opening itself may not be appropriate.
subset: uberon_slim
subset: vertebrate_core
synonym: "adult mouth" RELATED []
synonym: "mouth" RELATED []
synonym: "oral fissure" EXACT [FMA:59806]
synonym: "oral orifice" EXACT [FMA:59806]
synonym: "oral part of face" EXACT []
synonym: "oral region" EXACT []
synonym: "orofacial cavity" RELATED []
synonym: "subdivision of mouth" EXACT []
xref: BTO:0004698
xref: EHDAA2:0001326
xref: EHDAA:542
xref: EMAPA:16262
xref: FMA:59806
xref: MA:0000341
xref: TAO:0000590
xref: TGMA:0000131
xref: VHOG:0000280
xref: ZFA:0000590
is_a: UBERON:0000161 {source="FMA"} ! orifice
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165 ! mouth
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0000167
name: oral cavity
def: "Anatomical cavity at the start of the digestive tract that. Vertebrates: In vertebrates, the boundaries are the oral opening, the cheeks, the palate and (if present) the palatoglossal arch - if this is not present then the mouth and pharynx form the oropharyngeal cavity. The buccal cavity contains the teeth, tongue and palate (when present)" [ISBN10:0073040584, UBERON:cjm]
subset: uberon_slim
subset: vertebrate_core
synonym: "buccal cavity" EXACT [FMA:20292, ISBN10:0073040584]
synonym: "cavity of mouth" EXACT []
xref: AAO:0000053
xref: AAO:0000960
xref: EFO:0001975
xref: EHDAA2:0001324
xref: EHDAA:6970
xref: EMAPA:17411
xref: EV:0100057
xref: FMA:20292
xref: HAO:0000669
xref: ncithesaurus:Oral_Cavity
xref: SCTID:181220002
xref: TAO:0001027
xref: TGMA:0000102
xref: VHOG:0000188
xref: WBbt:0005255
xref: XAO:0000126
xref: ZFA:0001027
property_value: UBPROP:0000001 "Anatomical cavity bounded anteriorly by the mouth and posteriorly by the derivatives of the branchial arches.[AAO]" xsd:string
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0000168
name: segment of colon
def: "An organ segment that is part of a colon [Obol]." [OBOL:automatic]
xref: FMA:222905
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001155
intersection_of: UBERON:0000063 ! organ segment
intersection_of: part_of UBERON:0001155 ! colon
relationship: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0000170
name: pair of lungs
synonym: "lungs" EXACT []
synonym: "lungs pair" EXACT []
synonym: "pulmones" EXACT [FMA:68877, FMA:TA]
synonym: "set of lungs" EXACT []
xref: BTO:0000763
xref: EFO:0000934
xref: FMA:68877
xref: ncithesaurus:Lung
xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA
is_a: UBERON:0000477 ! anatomical cluster
relationship: has_part UBERON:0002167 ! right lung
relationship: has_part UBERON:0002168 ! left lung
[Term]
id: UBERON:0000171
name: respiration organ
def: "Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585]
subset: functional_classification
subset: organ_slim
synonym: "apparatus respiratorius organ" EXACT [OBOL:automatic]
synonym: "breathing organ" EXACT []
synonym: "gas exchange organ" RELATED []
synonym: "organ of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "organ of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory organ" EXACT []
synonym: "respiratory system organ" EXACT [OBOL:automatic]
xref: EMAPA:17607
xref: SCTID:272626006
xref: SPD:0000428
xref: TGMA:0001247
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0000172
name: vomit
def: "Vomit is a bodily fluid consisting of the expulsed contents of the stomach of an organism disgorged through the mouth or nose." [ENVO:00000338]
xref: ENVO:00000338
xref: galen:Vomitus
xref: ncithesaurus:Vomitus
xref: OpenCyc:Mx4rvViQTJwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000173
name: amniotic fluid
def: "Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided." [ENVO:02000021]
synonym: "acqua amnii" RELATED [BTO:0000068]
synonym: "liquor amnii" RELATED [BTO:0000068]
xref: BTO:0000068
xref: ENVO:02000021
xref: EV:0100123
xref: GAID:1155
xref: MA:0002893
xref: MESH:A.12.098
xref: ncithesaurus:Amniotic_Fluid
xref: VHOG:0001267
is_a: UBERON:0000463 ! portion of organism substance
relationship: surrounds UBERON:0000922 ! embryo
[Term]
id: UBERON:0000174
name: excreta
alt_id: UBERON:0000324
alt_id: UBERON:0007550
def: "Excreta are bodily fluids consisting of waste matter, such as sweat or feces, discharged from the body." [ENVO:02000022]
synonym: "excretion" EXACT [BTO:0000491]
synonym: "waste substance" EXACT [AEO:0000184]
xref: AEO:0000184
xref: BTO:0000491
xref: EHDAA2:0003184
xref: ENVO:02000022
xref: FMA:9674
xref: galen:Excretion
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000175
name: pleural effusion
def: "Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation." [ENVO:02000033]
comment: cede to MPATH? Note the ncit class is under finding.
xref: ENVO:02000033
xref: ncithesaurus:Pleural_Effusion
xref: OpenCyc:Mx4rLaTGCK2TEduAAAAOpmP6tw
is_a: UBERON:0001087 ! pleural fluid
[Term]
id: UBERON:0000176
name: oronasal secretion
def: "Oronasal secretion is a bodily fluid secreted from the body via the mouth or nose." [ENVO:02000035]
xref: ENVO:02000035
is_a: UBERON:0000463 ! portion of organism substance
relationship: secreted_by UBERON:0001826 ! nasal cavity mucosa
[Term]
id: UBERON:0000177
name: pus
def: "Pus is a bodily fluid consisting of a whitish-yellow or yellow substance produced during inflammatory responses of the body that can be found in regions of pyogenic bacterial infections. Pus is produced from the dead and living cells which travel into the intercellular spaces around the affected cells." [ENVO:02000038, Wikipedia:Pus]
comment: AO notes: biospecimen in NCIT
synonym: "purulent exudate" RELATED []
xref: ENVO:02000038
xref: galen:Pus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/90/Swollen_eye_with_conjunctivitis.jpg/180px-Swollen_eye_with_conjunctivitis.jpg
xref: ncithesaurus:Pus
xref: OpenCyc:Mx4rvVjG6ZwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000178
name: blood
def: "Circulating body substance which consists of blood plasma and hemoglobin-carrying red blood cells. Excludes blood analogues (see UBERON:0000179 haemolymphatic fluid)." [FMA:9670, Wikipedia:Blood]
subset: uberon_slim
subset: vertebrate_core
synonym: "portion of blood" EXACT []
synonym: "vertebrate blood" EXACT []
synonym: "whole blood" RELATED [BTO:0000089]
xref: AAO:0000046
xref: BTO:0000089
xref: EFO:0000296
xref: EHDAA2:0000176
xref: EHDAA:418
xref: EMAPA:16332
xref: ENVO:02000027
xref: EV:0100047
xref: FMA:9670
xref: GAID:965
xref: galen:Blood
xref: MA:0000059
xref: MESH:A.12.207.152
xref: MIAA:0000315
xref: ncithesaurus:Blood
xref: OpenCyc:Mx4rvVjI8JwpEbGdrcN5Y29ycA
xref: TAO:0000007
xref: VHOG:0000224
xref: XAO:0000124
xref: ZFA:0000007
property_value: UBPROP:0000001 "A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string
property_value: UBPROP:0000001 "Highly specialized circulating tissue consisting of several types of cells suspended in a fluid medium known as plasma.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO]" xsd:string
is_a: UBERON:0000179 ! haemolymphatic fluid
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0004535 ! cardiovascular system
[Term]
id: UBERON:0000179
name: haemolymphatic fluid
def: "Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." []
synonym: "blood or blood analog" RELATED []
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0002390
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002390 ! hematopoietic system
created_by: cjm
creation_date: 2009-04-08T04:38:19Z
[Term]
id: UBERON:0000180
name: lateral lumbar region of abdomen
def: "a region of the posterior torso (lower back) beneath the ribs and above the ilium." [Wikipedia:Abdomen#9-region_scheme, Wikipedia:Flank]
synonym: "flank" EXACT [FMA:14603]
synonym: "lateral region" EXACT [FMA:14603]
synonym: "lateral region of abdomen" EXACT [FMA:14603]
synonym: "latus" EXACT [FMA:14603]
synonym: "regio lateralis" EXACT [FMA:14603]
xref: FMA:14603
xref: galen:Flank
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1220.png
xref: ncithesaurus:Flank
xref: SCTID:243329008
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0000199
name: neck of radius
def: "the narrow part of the shaft of the radius just below the head." [http://www.medilexicon.com/medicaldictionary.php?t=58913]
synonym: "radial neck" EXACT [FMA:23479]
xref: FMA:23479
xref: galen:NeckOfRadius
xref: SCTID:181942005
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0004413 {source="FMA"} ! proximal epiphysis of radius
[Term]
id: UBERON:0000200
name: gyrus
def: "A ridge, generally surrounded by one or more sulci." [Wikipedia:Gyrus]
synonym: "cerebral gyrus" EXACT [BTO:0002495]
synonym: "gyri" RELATED PLURAL [BTO:0002495]
synonym: "gyri of cerebrum" RELATED PLURAL [BTO:0002495]
synonym: "gyrus of cerebrum" RELATED [BTO:0002495]
synonym: "gyrus of neuraxis" EXACT [FMA:83874]
xref: BTO:0002495
xref: FMA:83874
xref: ncithesaurus:Cerebral_Gyrus
xref: SCTID:279165009
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: surrounded_by UBERON:0000093 ! sulcus
[Term]
id: UBERON:0000201
name: endothelial blood brain barrier
def: "A blood brain barrier that is composed of endothelial cells." [UBERON:cjm]
xref: NIF_Subcellular:nlx_subcell_100205
is_a: UBERON:0000120 ! blood brain barrier
is_a: UBERON:0006914 ! squamous epithelium
relationship: has_part UBERON:0001986 ! endothelium
created_by: cjm
creation_date: 2009-04-10T08:15:44Z
[Term]
id: UBERON:0000202
name: glial blood brain barrier
def: "A blood brain barrier composed of glial cells." [UBERON:cjm]
xref: FBbt:00007091
is_a: UBERON:0000120 ! blood brain barrier
created_by: cjm
creation_date: 2009-04-10T08:42:24Z
[Term]
id: UBERON:0000203
name: pallium
def: "Dorsal part (roof region) of the telencephalon[GO]." [GO:0021543, https://sourceforge.net/tracker/?func=detail&aid=3535324&group_id=76834&atid=994726, ISBN10:0471888893, Wikipedia:Pallium_(neuroanatomy)]
comment: Taxon notes: In humans the cerebrum has three parts: the archipallium, the paleopallium and the neopallium. The developing telencephalon or forebrain is divided into pallium and subpallium. In amphibians, the cerebrum includes archipallium, paleopallium and some of the basal nuclei. Reptiles first developed a neopallium, which continued to develop in the brains of more recent species to become the neocortex of humans and Old World monkeys. In fish, the archipallium is the largest part of the cerebrum. Some researchers suggest the early archipallium gave rise to the human hippocampus[WP]
subset: developmental_classification
synonym: "area dorsalis telencephali" EXACT [ZFA:0000505]
synonym: "dorsal part of telencephalon" EXACT [ISBN10:0471888893]
synonym: "dorsal telencephalic area" EXACT [ZFA:0000505]
synonym: "dorsal telencephalon" EXACT [ZFA:0000505]
xref: SCTID:369224000
xref: TAO:0000505
xref: TAO:0007007
xref: ZFA:0000505
xref: ZFA:0007007
property_value: UBPROP:0000001 "The mantle of gray matter forming the cerebral cortex. http://www.thefreedictionary.com/pallium[TAO]" xsd:string
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
created_by: cjm
creation_date: 2009-04-18T12:03:09Z
[Term]
id: UBERON:0000204
name: ventral part of telencephalon
def: "Dorsal part (base region) of the telencephalon." [GO:0021544, GO_REF:0000021, ISBN10:0471888893, PMID:12626695]
comment: AO notes: BTO term refers specifically to the avian structure
subset: developmental_classification
synonym: "area ventralis telencephali" EXACT [ZFA:0000304]
synonym: "subpallium" EXACT [GO:0021544, ZFA:0000304]
synonym: "subpallium" NARROW [BTO:0003401]
synonym: "ventral telencephalon" EXACT [ZFA:0000304]
xref: BTO:0003401
xref: EFO:0003522
xref: TAO:0000304
xref: ZFA:0000304
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: adjacent_to UBERON:0000203 ! pallium
relationship: part_of UBERON:0001893 ! telencephalon
created_by: cjm
creation_date: 2009-04-18T12:12:27Z
[Term]
id: UBERON:0000205
name: papula
def: "A thin protuberance on the surface of the body of an echinoderm containing diverticula of the water vascular system lined by ciliated peritoneum. Along with tube feet, provide the principle gas exchange surfaces.." [ISBN:0030229073]
synonym: "papulae" EXACT PLURAL [ISBN:0030229073]
synonym: "papulli" EXACT PLURAL []
is_a: UBERON:0002535 ! gill
created_by: cjm
creation_date: 2009-04-18T01:13:57Z
[Term]
id: UBERON:0000206
name: pharyngeal gill
def: "Gills of vertebrates are developed in the walls of the pharynx along a series of gill slits opening to the exterior. In fish, the gills are located on both sides of the pharynx. Gills are made of filaments which help increase surface area for oxygen exchange. In bony fish, the gills are covered by a bony cover called an operculum. When a fish breathes, it opens its mouth at regular times and draws in a mouthful of water. It then draws the sides of its throat together, forcing the water through the gill openings. The water passes over the gills on the outside. Valves inside the mouth keep the water from escaping through the mouth again. The operculum can be very important in adjusting the pressure of water inside of the pharynx to allow proper ventilation of the gills. Lampreys and sharks lack an operculum, they have multiple gill openings. Also, they must use different methods to force water over the gills. In sharks and rays, this ventilation of the gills is achieved either by the use of spiracles or ram ventilation (ventilation by constantly swimming). Although some animals use this method it is much better for animals to use a spiracle because they are less susceptible to injury." [Wikipedia:Gill#Vertebrate_gills]
xref: ANISEED:1235300
is_a: UBERON:0002535 ! gill
relationship: adjacent_to UBERON:0001042 ! chordate pharynx
created_by: cjm
creation_date: 2009-04-18T01:18:17Z
[Term]
id: UBERON:0000207
name: compound eye corneal lens
def: "A chitinous extracellular secretion of the four underlying cone cells and the pigment cells." [GO:0048058]
synonym: "acellular lens" RELATED []
xref: FBbt:00004199
xref: TADS:0000304
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0005389 ! transparent eye structure
disjoint_from: UBERON:0000965 ! lens of camera-type eye
relationship: part_of UBERON:0000018 ! compound eye
created_by: cjm
creation_date: 2009-04-18T01:35:32Z
[Term]
id: UBERON:0000208
name: cellular lens
created_by: cjm
creation_date: 2009-04-18T01:37:39Z
is_obsolete: true
replaced_by: UBERON:0000965
[Term]
id: UBERON:0000209
name: tetrapod frontal bone
def: "In humans: A bone resembling a cockleshell in two portions the squama frontalis, corresponding with the region of the forehead, and an orbital or horizontal portion, the pars orbitalis, which enters into the formation of the roofs of the orbital and nasal cavities." [Wikipedia:Frontal_bone]
comment: Taxon notes: fused in humans, paired in other animals Development notes: In the mouse the parietal originates from cephalic paraxial mesoderm (Jiang 2000; Morriss-Kay 2001), whereas in the chicken it is traced back to either mesodermal (Noden 1978) or neural crest (Couly 1992, 1993).
synonym: "frontal" NARROW [AAO:0000206]
synonym: "frontal bone" NARROW SENSU [FMA:52734, MA:0001466]
synonym: "os frontal" NARROW SENSU [Wikipedia:Frontal_bone]
synonym: "os frontale" RELATED LATIN [Wikipedia:Frontal_bone]
xref: AAO:0000206
xref: EMAPA:19016
xref: FMA:52734
xref: GAID:226
xref: http://upload.wikimedia.org/wikipedia/commons/5/5b/Frontal_bone.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray136.png/200px-Gray136.png
xref: MA:0001466
xref: MESH:A.02.835.232.781.375
xref: ncithesaurus:Frontal_Bone
xref: SCTID:181793006
xref: VHOG:0001324
xref: VSAO:0000208
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0010428 {source="FMA"} ! flat bone
is_a: UBERON:0011164 ! neurocranium bone
relationship: connected_to UBERON:0001677 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! sphenoid bone
relationship: connected_to UBERON:0001679 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! ethmoid bone
relationship: overlaps UBERON:0001697 ! orbital region
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0003113 {source="cjm"} ! dermatocranium
[Term]
id: UBERON:0000210
name: tetrapod parietal bone
def: "In humans: bone forming side and roof of cranium. Each bone is irregularly quadrilateral in form, and has two surfaces, four borders, and four angles." [Wikipedia:Parietal_bone, ZFA:0000514]
comment: Taxon notes: The frontal bone in teleost fish is the homolog of the parietal bone in tetrapods[various]. In many non-mammalian tetrapods, they are bordered to the rear by a pair of postparietal bones that may be solely in the roof of the skull, or slope downwards to contribute to the back of the skull, depending on the species. In the living tuatara, and many fossil species, a small opening, the parietal foramen, lies between the two parietal bones. This opening is the location of a third eye in the midline of the skull, which is much smaller than the two main eyes[WP]
synonym: "frontal bone" NARROW [TAO:0000514]
synonym: "os parietale" RELATED [Wikipedia:Parietal_bone]
synonym: "os parietale" RELATED LATIN [Wikipedia:Parietal_bone]
synonym: "parietal" NARROW SENSU [AAO:0000390]
synonym: "parietal bone" NARROW SENSU [FMA:9613]
synonym: "teleost frontal bone" NARROW [TAO:0000514]
xref: AAO:0000390
xref: EMAPA:18715
xref: FMA:9613
xref: GAID:229
xref: http://upload.wikimedia.org/wikipedia/commons/2/21/Gray132.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray132.png/200px-Gray132.png
xref: MA:0001469
xref: MESH:A.02.835.232.781.651
xref: ncithesaurus:Parietal_Bone
xref: SCTID:181794000
xref: VHOG:0001324
xref: VHOG:0001326
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0010428 {source="FMA"} ! flat bone
is_a: UBERON:0011164 ! neurocranium bone
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0004339 {source="PMID:11523816"} ! vault of skull
[Term]
id: UBERON:0000211
name: ligament
def: "Nonparenchymatous organ that primarily consists of dense connective tissue aggregated into fasciculi by connective tissue. Examples: sutural ligament, radiate sternocostal ligament, ligament of liver, ovarian ligament[FMA]." [FMA:21496, Wikipedia:Ligament]
comment: Note this groups both skeletal and non-skeletal ligaments. What is called a "ligament" in many AOs is actually a skeletal ligament
subset: uberon_slim
subset: vertebrate_core
synonym: "ligament organ" EXACT [FMA:21496]
xref: EFO:0001966
xref: FMA:21496
xref: galen:Ligament
xref: http://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg
xref: MA:0000113
xref: ncithesaurus:Ligament
xref: OpenCyc:Mx4rvVjqpZwpEbGdrcN5Y29ycA
xref: SCTID:182358004
xref: TAO:0001682
xref: VHOG:0001272
xref: XAO:0004031
xref: ZFA:0001675
property_value: UBPROP:0000001 "Portion of connective tissue that connects bone or cartilage.[TAO]" xsd:string
is_a: UBERON:0007846 {source="VSAO"} ! dense regular collagenous tissue
relationship: has_part UBERON:0007846 ! dense regular collagenous tissue
[Term]
id: UBERON:0000212
name: toilet claw
def: "specialized claw or nail on the foot of certain primates, used for personal grooming." [Wikipedia:Toilet-claw]
is_a: UBERON:0001705 ! nail
created_by: cjm
creation_date: 2009-05-19T08:19:58Z
[Term]
id: UBERON:0000218
name: vertebral arch of axis
synonym: "vertebral foramen of second cervical vertebra" EXACT []
xref: FMA:24053
is_a: UBERON:0008434 ! cervical vertebral arch
relationship: part_of UBERON:0001093
intersection_of: UBERON:0003861 ! neural arch
intersection_of: part_of UBERON:0001093 ! second cervical vertebra
relationship: part_of UBERON:0001093 ! second cervical vertebra
[Term]
id: UBERON:0000219
name: vertebral foramen of atlas
def: "." [Wikipedia:Atlas_(anatomy)#Vertebral_foramen]
synonym: "vertebral foramen of first cervical vertebra" EXACT []
xref: FMA:24293
xref: SCTID:281228008
is_a: UBERON:0008429 ! cervical vertebral foramen
relationship: part_of UBERON:0001092
intersection_of: UBERON:0001131 ! vertebral foramen
intersection_of: part_of UBERON:0001092 ! first cervical vertebra
relationship: part_of UBERON:0001092 ! first cervical vertebra
[Term]
id: UBERON:0000220
name: atlanto-occipital joint
def: "The Atlanto-occipital joint (articulation between the atlas and the occipital bone) consists of a pair of condyloid joints. The atlanto-occipital joint is a synovial joint. The ligaments connecting the bones are: Two Articular capsules; Posterior atlantoöccipital membrane; Anterior atlantoöccipital membrane; Lateral atlantoöccipital" [Wikipedia:Atlanto-occipital_joint]
synonym: "articulatio atlanto-occipitalis" EXACT [FMA:24939]
synonym: "articulatio atlantooccipitalis" RELATED LATIN [Wikipedia:Atlanto-occipital_joint]
synonym: "atlanto occipital joint" EXACT []
synonym: "atlantooccipital joint" EXACT []
synonym: "craniovertebral joint" EXACT [FMA:24939]
synonym: "occipito atlantal joint" EXACT []
synonym: "occipito-atlantal joint" EXACT []
xref: FMA:24939
xref: http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png
xref: ncithesaurus:Atlanto-occipital_Joint
xref: ncithesaurus:Atlanto-occipital_Joint-Atlanto
xref: SCTID:361831006
is_a: UBERON:0002217 {source="FMA"} ! synovial joint
relationship: connects UBERON:0001092 ! first cervical vertebra
relationship: connects UBERON:0001676 ! occipital bone
relationship: part_of UBERON:0011138 ! post-cranial axial skeletal system
[Term]
id: UBERON:0000221
name: supraauricular point
def: "a craniometric point on the posterior root of the zygomatic process of the temporal bone directly above the auricular point." [http://www.medilexicon.com/medicaldictionary.php?t=70620]
synonym: "supra-auricular part of head" EXACT [FMA:224222]
xref: FMA:224222
is_a: UBERON:0006983 {source="FMA"} ! anatomical point
[Term]
id: UBERON:0000301
name: amniotic cavity
def: "The amniotic cavity is formed by the fusion of the parts of the amniotic fold, which first makes its appearance at the cephalic extremity, and subsequently at the caudal end and sides of the embryo. As the amniotic fold rises and fuses over the dorsal aspect of the embryo, the amniotic cavity is formed. [WP,unvetted]." [Wikipedia:Amniotic_cavity]
synonym: "cavitas amniotica" RELATED LATIN [Wikipedia:Amniotic_cavity]
xref: BTO:0000025
xref: EHDAA2:0000119
xref: EHDAA:83
xref: EMAPA:16079
xref: FMA:63941
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png
xref: ncithesaurus:Amniotic_Cavity
xref: SCTID:280366002
xref: VHOG:0000855
is_a: UBERON:0000464 ! anatomical space
relationship: has_part UBERON:0000173 ! amniotic fluid
[Term]
id: UBERON:0000303
name: adductor longus
def: "An adductor muscle that attaches to the hip and femur. In humans, it is a part of the adductor group of the thigh, that as the name suggests adducts the thigh. The adductor longus muscle forms the medial wall of the femoral triangle[WP, generalized]." [Wikipedia:Adductor_longus_muscle]
comment: Definition generalized to accommodate AAO class - "Originates on the iliac portion of the ventral iliac rim and inserts on the lateral surface of the M. adductor magnus." [AAO:0010034]
synonym: "adductor longus muscle" EXACT []
synonym: "long adductor muscle" RELATED [BTO:0000029]
synonym: "Musculus adductor longus" RELATED LATIN [Wikipedia:Adductor_longus_muscle]
synonym: "musculus adductor longus" RELATED [BTO:0000029]
xref: AAO:0010034
xref: BTO:0000029
xref: FMA:22441
xref: http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: SCTID:181686003
property_value: UBPROP:0000001 "Originates on the iliac portion of the ventral iliac rim and inserts on the lateral surface of the M. adductor magnus.[AAO]" xsd:string
is_a: UBERON:0004252 ! hindlimb stylopod muscle
is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip
relationship: has_muscle_insertion UBERON:0000981 {source="dbpedia", notes="linea aspera"} ! femur
relationship: has_muscle_origin UBERON:0001275 {notes="pubic body just below the pubic crest", source="dbpedia"} ! pubis
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0000304
name: tendon sheath
def: "A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath" [Wikipedia:Tendon_sheath]
comment: TODO: add layer relations. 'tendon sheath' GAT in FMA.
synonym: "synovial tendon sheath" EXACT [FMA:45087]
synonym: "vagina tendinis" RELATED LATIN [Wikipedia:Tendon_sheath]
xref: BTO:0000051
xref: FMA:45087
xref: FMA:76715
xref: ncithesaurus:Tendon_Sheath
xref: SCTID:361885006
is_a: UBERON:0004923 ! organ component layer
relationship: surrounds UBERON:0000043 ! tendon
[Term]
id: UBERON:0000305
name: amnion
def: "A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called “Amniota”; but not in amphibians and fish (Ichthyopsida), which are consequently termed “Anamniota”. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]." [Wikipedia:Amnion]
xref: BTO:0000065
xref: EHDAA2:0000116
xref: EHDAA:136
xref: EMAPA:16109
xref: EV:0100122
xref: FMA:80223
xref: GAID:1298
xref: http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray14.png
xref: MESH:A.16.254.403.277
xref: ncithesaurus:Amnion
xref: SCTID:181457005
xref: VHOG:0000721
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005631 ! extraembryonic membrane
relationship: develops_from UBERON:0000924 {source="ISBN10:0073040584"} ! ectoderm
relationship: develops_from UBERON:0004871 {source="ISBN10:0073040584"} ! somatic layer of lateral plate mesoderm
relationship: surrounds UBERON:0000922 ! embryo
[Term]
id: UBERON:0000307
name: blastula
alt_id: UBERON:0007011
def: "Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula]
comment: TODO - check relationship with epiblast. Note in FMA this is not a subclass of embryo, but in uberon embryo is the whole organism from zygote onwards and thus includes the blastula
subset: inconsistent_with_fma
synonym: "blastosphere" RELATED [Wikipedia:Blastula]
synonym: "blastula embryo" EXACT [BILA:0000059]
xref: BILA:0000059
xref: BTO:0000128
xref: GAID:1294
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png
xref: MESH:A.16.254.270.274
xref: OGEM:000006
xref: OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg
is_a: UBERON:0000922 ! embryo
relationship: existence_starts_and_ends_during UBERON:0000108
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_starts_and_ends_during UBERON:0000108 ! blastula stage
relationship: develops_from UBERON:0007010 ! cleaving embryo
relationship: existence_starts_and_ends_during UBERON:0000108 ! blastula stage
[Term]
id: UBERON:0000309
name: body wall
def: "the external portion of an animal body comprised of ectoderm and mesoderm layers that encloses the body cavity." [MP:0003385]
synonym: "Koerperwand" RELATED [BTO:0000139]
synonym: "trunk wall" EXACT [FMA:10427]
synonym: "wall of trunk" EXACT [FMA:10427]
xref: BTO:0000139
xref: FMA:10427
xref: galen:BodyWall
xref: SCTID:281483004
is_a: UBERON:0000060 ! anatomical wall
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0000310
name: breast
def: "The breast is the upper ventral region of an animal's torso, particularly that of mammals, including human beings. The breasts of a female primate’s body contain the mammary glands, which secrete milk used to feed infants. Both men and women develop breasts from the same embryological tissues. However, at puberty female sex hormones, mainly estrogens, promote breast development, which does not happen with men. As a result women's breasts become more prominent than men's. [WP,unvetted]." [Wikipedia:Breast]
synonym: "mamma" RELATED LATIN [Wikipedia:Breast]
synonym: "mammary part of chest" EXACT [FMA:9601]
synonym: "mammary region" EXACT [FMA:9601]
xref: BTO:0000149
xref: EV:0100124
xref: FMA:9601
xref: GAID:33
xref: galen:Breast
xref: http://upload.wikimedia.org/wikipedia/commons/6/6e/Closeup_of_female_breast.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Closeup_of_female_breast.jpg/200px-Closeup_of_female_breast.jpg
xref: MESH:A.01.236
xref: ncithesaurus:Breast
xref: OpenCyc:Mx4rvVjV7ZwpEbGdrcN5Y29ycA
xref: SCTID:181131000
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0000311
name: extensor muscle
def: "A muscle that, upon contraction, tends to straighten a joint or limb. The antagonist of a flexor muscle[BTO]. Any of the muscles that increase the angle between members of a limb, as by straightening the elbow or knee or bending the wrist or spine backward. The movement is usually directed backward, with the notable exception of the knee joint. In humans, certain muscles of the hand and foot are named for this function. In the hand these include the extensor carpi radialis brevis, extensor carpi radialis longus, and extensor carpi ulnaris, which run from the humerus (bone of the upper arm) along the back of the forearm to the metacarpal bones at the back of the hand[Britannica]" [http://www.britannica.com/EBchecked/topic/198909/extensor-muscle]
synonym: "extensor" RELATED []
xref: BTO:0000151
xref: FMA:75000
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010962 ! extensor pre-muscle mass
relationship: part_of UBERON:0004708 ! limb/fin
[Term]
id: UBERON:0000312
name: inner cambium layer of periosteum
synonym: "cambial layer" EXACT [FMA:234358]
synonym: "cambial layer of periosteum" EXACT [FMA:234358]
synonym: "cambium" EXACT []
synonym: "cambium layer of periosteum" EXACT [FMA:234358]
synonym: "inner cambial layer of periosteum" EXACT [FMA:234358]
synonym: "osteogenic layer of periosteum" EXACT [Wikipedia:Periosteum]
xref: FMA:234358
is_a: UBERON:0000158 ! membranous layer
relationship: part_of UBERON:0002515 {source="FMA"} ! periosteum
[Term]
id: UBERON:0000313
name: tibial cartilage
def: "Cartilage pertaining to the tibia." [Dorlands_Medical_Dictionary:MerckSource]
comment: TODO
synonym: "cartilage of tibia" EXACT [FMA:33923]
xref: BTO:0000207
xref: FMA:33923
is_a: UBERON:0004270 ! lower leg connective tissue
is_a: UBERON:0007391 ! pelvic appendage cartilage
relationship: part_of UBERON:0000979
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0000979 ! tibia
relationship: part_of UBERON:0000979 ! tibia
[Term]
id: UBERON:0000314
name: cecum mucosa
def: "A mucosa that is part of a cecum [Obol]." [OBOL:automatic]
synonym: "caecum mucosa" EXACT [OBOL:automatic]
synonym: "caecum mucosa of organ" EXACT [OBOL:automatic]
synonym: "caecum mucous membrane" EXACT [OBOL:automatic]
synonym: "caecum organ mucosa" EXACT [OBOL:automatic]
synonym: "Cecal mucosa" EXACT [FMA:14998]
synonym: "cecum mucosa of organ" EXACT [OBOL:automatic]
synonym: "cecum mucous membrane" EXACT [OBOL:automatic]
synonym: "cecum organ mucosa" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum mucosa" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum mucosa of organ" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum mucous membrane" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of caecum" EXACT [OBOL:automatic]
synonym: "mucosa of cecum" EXACT [OBOL:automatic]
synonym: "mucosa of intestinum crassum caecum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of caecum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cecum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intestinum crassum caecum" EXACT [OBOL:automatic]
synonym: "mucous membrane of caecum" EXACT [OBOL:automatic]
synonym: "mucous membrane of cecum" EXACT [OBOL:automatic]
synonym: "mucous membrane of intestinum crassum caecum" EXACT [OBOL:automatic]
synonym: "organ mucosa of caecum" EXACT [OBOL:automatic]
synonym: "organ mucosa of cecum" EXACT [OBOL:automatic]
synonym: "organ mucosa of intestinum crassum caecum" EXACT [OBOL:automatic]
xref: BTO:0000213
xref: FMA:14998
is_a: UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0001153
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001153 ! caecum
relationship: part_of UBERON:0001153 ! caecum
[Term]
id: UBERON:0000315
name: subarachnoid space
def: "The space between the arachnoid and pia mater." [GOC:add, http://sourceforge.net/tracker/?func=detail&atid=1109502&aid=3535256&group_id=76834, Wikipedia:Subarachnoid_space]
synonym: "cavitas subarachnoidea" RELATED LATIN [BTO:0000230]
synonym: "cavum subarachnoideale" RELATED LATIN [Wikipedia:Subarachnoid_space]
synonym: "spatium leptomeningeum" RELATED LATIN [BTO:0000230]
synonym: "spatium subarachnoideum" RELATED LATIN [Wikipedia:Subarachnoid_space]
synonym: "spatium subarachnoideum" RELATED LATIN [BTO:0000230]
synonym: "subarachnoid cavity" RELATED [BTO:0000230]
xref: BTO:0000230
xref: EMAPA:18211
xref: EMAPA:19053
xref: EMAPA:19054
xref: EMAPA:19055
xref: EMAPA:25079
xref: FMA:83716
xref: GAID:689
xref: http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray769-en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Gray769.png/200px-Gray769.png
xref: MESH:A.08.186.566.166.686
xref: SCTID:362311001
is_a: UBERON:0000464 ! anatomical space
relationship: adjacent_to UBERON:0002361
relationship: adjacent_to UBERON:0002362
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: adjacent_to UBERON:0002361 ! pia mater
intersection_of: adjacent_to UBERON:0002362 ! arachnoid mater
relationship: adjacent_to UBERON:0002361 ! pia mater
relationship: adjacent_to UBERON:0002362 ! arachnoid mater
relationship: contains UBERON:0001359 ! cerebrospinal fluid
[Term]
id: UBERON:0000316
name: cervical mucus
def: "Thick acidic mucus that blocks the cervical os after mestruation[WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus." [Wikipedia:Cervix#Cervical_mucus, Wikipedia:Mucus#Reproductive_system]
synonym: "cervix mucus" EXACT [Obol:automatic]
xref: BTO:0000242
xref: FMA:83689
xref: MESH:A.12.200.503.339
is_a: UBERON:0000912 {source="FMA"} ! mucus
[Term]
id: UBERON:0000317
name: colonic mucosa
alt_id: UBERON:0003347
alt_id: UBERON:0004981
def: "A mucosa that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon mucosa" EXACT [FMA:14984]
synonym: "colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "colon mucous membrane" EXACT [OBOL:automatic]
synonym: "colon organ mucosa" EXACT [OBOL:automatic]
synonym: "colonic mucous membrane" EXACT [FMA:14984]
synonym: "large bowel mucosa" EXACT [OBOL:automatic]
synonym: "large bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "large bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "large bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of colon" EXACT [FMA:14984]
synonym: "mucosa of large bowel" EXACT [OBOL:automatic]
synonym: "mucosa of organ of colon" EXACT [OBOL:automatic]
synonym: "mucosa of organ of large bowel" EXACT [OBOL:automatic]
synonym: "mucosa of segment of colon" EXACT [FMA:85388]
synonym: "mucous membrane of colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of large bowel" EXACT [OBOL:automatic]
synonym: "organ mucosa of colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of large bowel" EXACT [OBOL:automatic]
xref: BTO:0000271
xref: EFO:0003038
xref: EMAPA:27375
xref: FMA:14984
xref: FMA:85388
xref: SCTID:362157008
is_a: UBERON:0001207 ! mucosa of large intestine
relationship: part_of UBERON:0001155
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001155 ! colon
relationship: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0000319
name: cytotrophoblast
def: "The cytotrophoblast (or layer of Langhans) is the inner layer of the trophoblast, interior to the syncytiotrophoblast in an embryo. It serves to anchor the embryonic chorion to the maternal endometrium. Cytotrophoblasts are stem cells in the chorionic villi. During differentiation, mononuclear cytotrophoblast fuse together into the multinucleated syncytiotrophoblasts. The primary villi has only the cytotrophoblast as an axe. [WP,unvetted]." [Wikipedia:Cytotrophoblast]
synonym: "cellular trophoblast" EXACT [FMA:83039]
synonym: "cytotrophoblastic cell" RELATED [FMA:83039]
synonym: "cytotrophoblastic cell layer" EXACT [UBERON:cjm]
synonym: "cytotrophoblastus" RELATED LATIN [Wikipedia:Cytotrophoblast]
synonym: "Langhans' layer" RELATED [BTO:0000322]
xref: BTO:0000322
xref: EHDAA:127
xref: EHDAA:152
xref: EHDAA:89
xref: EMAPA:16067
xref: FMA:83039
xref: http://upload.wikimedia.org/wikipedia/commons/d/df/Gray36.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray36.png/200px-Gray36.png
xref: ncithesaurus:Cytotrophoblast
xref: SCTID:308841008
xref: VHOG:0000683
is_a: UBERON:0002050 ! embryonic structure
relationship: adjacent_to UBERON:0000371 ! syncytiotrophoblast
relationship: adjacent_to UBERON:0000453 ! decidua basalis
relationship: part_of UBERON:0000088 ! trophoblast
[Term]
id: UBERON:0000320
name: duodenal mucosa
alt_id: UBERON:0003348
def: "A mucosa that is part of a duodenum [Obol]." [OBOL:automatic]
synonym: "Doudenal mucosa" EXACT [FMA:14942]
synonym: "Duodenal mucous membrane" EXACT [FMA:14942]
synonym: "duodenum mucosa" RELATED [BTO:0000367]
synonym: "mucosa of duodenum" EXACT [OBOL:automatic]
synonym: "mucous membrane of duodenum" EXACT [OBOL:automatic]
xref: BTO:0000367
xref: EMAPA:27235
xref: FMA:14942
xref: SCTID:362146003
is_a: UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0002114
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002114 ! duodenum
relationship: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0000322
name: cerebral lobe
comment: set/singular
synonym: "Cerebral lobes" EXACT [FMA:77800]
synonym: "Cerebral lobes set" EXACT [FMA:77800]
synonym: "lobi cerebri" EXACT [FMA:77800, FMA:TA]
xref: BTO:0000445
xref: FMA:77800
xref: SCTID:272632001
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0000323
name: late embryo
comment: TODO - check fetus/embryo. WP: An embryo is a multicellular diploid eukaryote in its earliest stage of development, from the time of first cell division until birth, hatching, or germination. In humans, it is called an embryo until about eight weeks after fertilization (i.e. ten weeks LMP), and from then it is instead called a fetus.
synonym: "embryo late growth stage" RELATED [BTO:0000449]
synonym: "embryo late stage" RELATED [BTO:0000449]
synonym: "fetus" NARROW [BTO:0000449]
xref: BTO:0000449
xref: EFO:0001323
xref: FMA:63919
xref: GAID:552
xref: MESH:A.16.378
xref: ncithesaurus:Fetus
xref: OpenCyc:Mx4rvZfC2ZwpEbGdrcN5Y29ycA
xref: SCTID:83418008
is_a: UBERON:0000922 ! embryo
relationship: existence_ends_with UBERON:0007220 ! late embryonic stage
[Term]
id: UBERON:0000325
name: gastric gland
def: "any of the branched tubules in the inner lining of the stomach that secrete gastric juice and protective mucus." []
subset: grouping_class
subset: organ_slim
xref: BTO:0000503
xref: FMA:14919
is_a: UBERON:0002365 {source="cjm"} ! exocrine gland
is_a: UBERON:0003294 ! gland of foregut
relationship: part_of UBERON:0006924 {source="ISBN10:0073040584"} ! stomach glandular epithelium
[Term]
id: UBERON:0000326
name: pancreatic juice
def: "Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach." [GO:0030157]
synonym: "succus pancreaticus" RELATED [BTO:0000504]
xref: BTO:0000504
xref: FMA:62973
xref: GAID:1166
xref: MESH:A.12.200.567
is_a: UBERON:0000456 ! bodily secretion
[Term]
id: UBERON:0000328
name: gut wall
synonym: "wall of gut" EXACT [FMA:45653]
xref: BTO:0000547
xref: FMA:45653
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0000329
name: hair root
def: "The enlarged basal part of a hair within the skin[BTO]. The root of the hair ends in an enlargement, the hair bulb, which is whiter in color and softer in texture than the shaft, and is lodged in a follicular involution of the epidermis called the hair follicle. [Wikipedia]." [BTO:0000555, Wikipedia:Hair_root]
synonym: "root of hair" EXACT [FMA:70730]
xref: BTO:0000555
xref: FMA:70730
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray944.png/200px-Gray944.png
xref: ncithesaurus:Hair_Root
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001037 ! strand of hair
[Term]
id: UBERON:0000331
name: ileal mucosa
def: "A mucosa that is part of a ileum [Obol]." [OBOL:automatic]
synonym: "Ileal mucous membrane" EXACT [FMA:14956]
synonym: "Ileum mucosa" EXACT [FMA:14956]
synonym: "ileum mucosa" EXACT [OBOL:automatic]
synonym: "ileum mucosa of organ" EXACT [OBOL:automatic]
synonym: "ileum mucous membrane" EXACT [OBOL:automatic]
synonym: "ileum organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of ileum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ileum" EXACT [OBOL:automatic]
synonym: "mucous membrane of ileum" EXACT [OBOL:automatic]
synonym: "organ mucosa of ileum" EXACT [OBOL:automatic]
xref: BTO:0000619
xref: FMA:14956
xref: SCTID:85458007
is_a: UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0002116
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002116 ! ileum
relationship: part_of UBERON:0002116 ! ileum
[Term]
id: UBERON:0000332
name: yellow bone marrow
synonym: "fat marrow" RELATED [BTO:0000635]
synonym: "medulla ossium flava" RELATED [BTO:0000635]
synonym: "yellow marrow" RELATED [BTO:0000635]
xref: BTO:0000635
xref: FMA:74596
xref: SCTID:5023006
is_a: UBERON:0002371 ! bone marrow
[Term]
id: UBERON:0000333
name: intestinal gland
def: "A gland that is part of a intestinal mucosa [Obol]." [OBOL:automatic]
comment: TODO check UBERON:0001983
subset: organ_slim
synonym: "bowel mucosa gland" EXACT [OBOL:automatic]
synonym: "bowel mucosa of organ gland" EXACT [OBOL:automatic]
synonym: "bowel mucous membrane gland" EXACT [OBOL:automatic]
synonym: "bowel organ mucosa gland" EXACT [OBOL:automatic]
synonym: "crypt of Lieberkuehn" RELATED [BTO:0000640]
synonym: "gland of bowel mucosa" EXACT [OBOL:automatic]
synonym: "gland of bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "gland of bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "gland of bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "gland of intestinal mucosa" EXACT [OBOL:automatic]
synonym: "gland of intestine mucosa" EXACT [OBOL:automatic]
synonym: "gland of intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "gland of intestine mucous membrane" EXACT [OBOL:automatic]
synonym: "gland of intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "gland of Lieberkuehn" RELATED [BTO:0000640]
synonym: "gland of mucosa of bowel" EXACT [OBOL:automatic]
synonym: "gland of mucosa of intestine" EXACT [OBOL:automatic]
synonym: "gland of mucosa of organ of bowel" EXACT [OBOL:automatic]
synonym: "gland of mucosa of organ of intestine" EXACT [OBOL:automatic]
synonym: "gland of mucous membrane of bowel" EXACT [OBOL:automatic]
synonym: "gland of mucous membrane of intestine" EXACT [OBOL:automatic]
synonym: "gland of organ mucosa of bowel" EXACT [OBOL:automatic]
synonym: "gland of organ mucosa of intestine" EXACT [OBOL:automatic]
synonym: "Glandula intestinalis" EXACT [FMA:15052]
synonym: "intestinal mucosa gland" EXACT [OBOL:automatic]
synonym: "intestine mucosa gland" EXACT [OBOL:automatic]
synonym: "intestine mucosa of organ gland" EXACT [OBOL:automatic]
synonym: "intestine mucous membrane gland" EXACT [OBOL:automatic]
synonym: "intestine organ mucosa gland" EXACT [OBOL:automatic]
synonym: "Lieberkuehn`s gland" RELATED [BTO:0000640]
synonym: "mucosa of bowel gland" EXACT [OBOL:automatic]
synonym: "mucosa of intestine gland" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bowel gland" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intestine gland" EXACT [OBOL:automatic]
synonym: "mucous membrane of bowel gland" EXACT [OBOL:automatic]
synonym: "mucous membrane of intestine gland" EXACT [OBOL:automatic]
synonym: "organ mucosa of bowel gland" EXACT [OBOL:automatic]
synonym: "organ mucosa of intestine gland" EXACT [OBOL:automatic]
xref: BTO:0000640
xref: FMA:15052
xref: SCTID:266297002
is_a: UBERON:0003408 ! gland of gut
relationship: part_of UBERON:0001242
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001242 ! intestinal mucosa
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0000341
name: throat
def: "In anatomy, the throat is the anterior part of the neck, in front of the vertebral column. It consists of the pharynx and larynx. An important feature of the throat is the epiglottis, a flap which separates the esophagus from the trachea and prevents inhalation of food or drink. The throat contains various blood vessels, various pharyngeal muscles, the trachea (windpipe) and the esophagus. The hyoid bone and the clavicle are the only bones located in the throat of mammals. It is sometimes considered a synonym for fauces. [WP,unvetted]." [Wikipedia:Throat]
comment: Taxon notes: The hyoid bone and the clavicle are the only bones located in the throat of mammals.
synonym: "gula" RELATED LATIN []
xref: BTO:0000828
xref: FMA:228738
xref: http://upload.wikimedia.org/wikipedia/commons/1/16/Throat_Diagram.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Throat_Diagram.png/200px-Throat_Diagram.png
xref: ncithesaurus:Throat
xref: OpenCyc:Mx4rwQtO_JwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0000344
name: mucosa
def: "A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP]" [Wikipedia:Mucous_membrane]
comment: Editor note: - check - mucosa vs region of mucosa. In FMA these are subtypes of Mucosa: Mucosa of gallbladder, tongue, .... The following are subtypes of Region of mucosa: Mucosa of zone of stomach, trachea, bronchus, dorsum of tongue.... Depends on whether the covered area is an organ or organ component. Uberon does not regard organ vs organ component as crucial distinction and thus collapses these into a single class deliberately
synonym: "mucosa of organ" EXACT [FMA:85355]
synonym: "mucosa of organ part" EXACT [FMA:85358]
synonym: "mucosal region" EXACT [FMA:85358]
synonym: "mucous membrane" EXACT [FMA:85355]
synonym: "organ mucosa" EXACT [FMA:85355]
synonym: "region of mucosa" RELATED [FMA:85358]
synonym: "tunica mucosa" RELATED [BTO:0000886]
synonym: "tunica mucosa" RELATED LATIN [Wikipedia:Mucous_membrane]
xref: AEO:0000199
xref: BTO:0000886
xref: EHDAA2:0003234
xref: EV:0100382
xref: FMA:85355
xref: FMA:85358
xref: GAID:297
xref: galen:Mucosa
xref: http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png
xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png
xref: MESH:A.10.615.550
xref: ncithesaurus:Mucosa
xref: OpenCyc:Mx4rvmKNOpwpEbGdrcN5Y29ycA
xref: SCTID:361693009
is_a: UBERON:0004923 ! organ component layer
[Term]
id: UBERON:0000345
name: myelin
def: "a dielectric (electrically insulating) material that forms a layer, the myelin sheath, usually around only the axon of a neuron. Myelin is about 40 % water; the dry mass of myelin is about 70 - 85 % lipids and about 15 - 30 % proteins. Some of the proteins that make up myelin are myelin basic protein (MBP), myelin oligodendrocyte glycoprotein (MOG), and proteolipid protein (PLP). The primary lipid of myelin is a glycolipid called galactocerebroside (GalC). The intertwining hydrocarbon chains of sphingomyelin serve to strengthen the myelin sheath." [Wikipedia:Myelin]
comment: editor note: cede to other ontology. Retired in ncit
xref: BTO:0000894
xref: FMA:62977
xref: ncithesaurus:Myelin
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000346
name: myelin membrane
comment: BTO has def The multilamellar myelin membrane is a specisalised lipid-rich domain of the glial cell plasma membrane. FMA has primary term name Myelinated plasma membrane of Schwann cell
synonym: "myelinated plasma membrane of Schwann cell" EXACT [FMA:73417]
xref: BTO:0000895
xref: FMA:73417
is_a: UBERON:0000470 ! cell part
relationship: has_part UBERON:0000345 ! myelin
[Term]
id: UBERON:0000347
name: myelin sheath
def: "the insulating envelope that surrounds nerve fibers or axons." [MP:0003871]
synonym: "medullary sheath" RELATED [BTO:0000900]
xref: BTO:0000900
xref: FMA:62983
xref: GAID:731
xref: GO:0043209
xref: MESH:A.08.637.600.500
xref: ncithesaurus:Myelin_Sheath
is_a: UBERON:0000470 ! cell part
relationship: has_part UBERON:0000345 ! myelin
[Term]
id: UBERON:0000348
name: ophthalmic nerve
def: "the sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the orbit and its contents, the nasal cavity and the skin of the nose and forehead." [MP:0009798, Wikipedia:Wikipedia:Ophthalmic_nerve]
synonym: "ethmoidal nerve" RELATED [Wikipedia:Ophthalmic_nerve]
synonym: "first division of fifth cranial nerve" EXACT [FMA:52621]
synonym: "first division of trigeminal nerve" EXACT [FMA:52621]
synonym: "nervus ophthalmicus (V1)" EXACT [FMA:52621]
synonym: "nervus ophthalmicus (Va)" EXACT [FMA:52621]
synonym: "nervus ophthalmicus [v1]" EXACT [FMA:52621, FMA:TA]
synonym: "nervus ophthalmicus [va]" EXACT [FMA:52621, FMA:TA]
synonym: "ophthalmic division" RELATED [BTO:0000926]
synonym: "ophthalmic division" RELATED [Wikipedia:Ophthalmic_nerve]
synonym: "ophthalmic division [V1]" EXACT [FMA:52621]
synonym: "ophthalmic division [Va]" EXACT [FMA:52621]
synonym: "ophthalmic division of fifth cranial nerve" EXACT [FMA:52621]
synonym: "ophthalmic division of trigeminal nerve (V1)" EXACT [FMA:52621]
synonym: "ophthalmic division of trigeminal nerve (Va)" EXACT [FMA:52621]
synonym: "ophthalmic nerve [V1]" EXACT [FMA:52621]
synonym: "ophthalmic nerve [Va]" EXACT [FMA:52621]
synonym: "opthalmic nerve" EXACT [Wikipedia:Ophthalmic_nerve]
synonym: "ramus opthalmicus profundus (ramus V1)" EXACT [AAO:0010648]
synonym: "trigeminal V nerve ophthalmic division" EXACT [MA:0001104]
xref: AAO:0010648
xref: BTO:0000926
xref: EHDAA2:0002088
xref: EHDAA:3744
xref: EMAPA:17800
xref: FMA:52621
xref: GAID:837
xref: MA:0001104
xref: MESH:A.08.800.800.120.760.650
xref: ncithesaurus:Ophthalmic_Nerve
xref: OpenCyc:Mx4rwEs_K5wpEbGdrcN5Y29ycA
xref: SCTID:280210000
xref: VHOG:0001349
property_value: UBPROP:0000001 "Sensory medial ramus of the trigeminal nerve.[AAO]" xsd:string
is_a: UBERON:0002003 {source="ncithesaurus"} ! peripheral nerve
relationship: branch_of UBERON:0001645 {source="FMA"} ! trigeminal nerve
[Term]
id: UBERON:0000349
name: limbic system
def: "A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]. including the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia]." [BIRNLEX:Limbic_system, Wikipedia:Limbic_system]
comment: obsoletion recommended. The current part_of children were chosen as the intersection of what is stated in wikipedia and in the FMA. NIF: We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity.
xref: BTO:0000928
xref: FMA:242000
xref: GAID:615
xref: http://upload.wikimedia.org/wikipedia/commons/5/5c/Brain_limbicsystem.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Brain_limbicsystem.jpg/200px-Brain_limbicsystem.jpg
xref: MESH:A.08.186.211.577
xref: ncithesaurus:Limbic_System
xref: OpenCyc:Mx4rwAeba5wpEbGdrcN5Y29ycA
xref: SCTID:361342009
is_a: UBERON:0000467 {source="GO"} ! anatomical system
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0000351
name: nuchal ligament
def: "a fibrous membrane, which, in the neck, represents the supraspinal ligaments of the upper vertebræ. As it is required for running, not all animals have a nuchal ligament" [Wikipedia:Nuchal_ligament]
synonym: "ligament of neck" EXACT [FMA:13427]
synonym: "ligamentum nuchae" EXACT [FMA:13427]
synonym: "paxwax" RELATED []
xref: BTO:0000952
xref: EMAPA:19207
xref: FMA:13427
xref: SCTID:166962007
is_a: UBERON:0008846 ! skeletal ligament
[Term]
id: UBERON:0000353
name: parenchyma
def: "functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues. Early in development the mammalian embryo has three distinct layers: ectoderm (external layer), endoderm (internal layer) and in between those two layers the middle layer or mesoderm. The parenchyma of most organs is of ectodermal (brain, skin) or endodermal origin (lungs, gastrointestinal tract, liver, pancreas). The parenchyma of a few organs (spleen, kidneys, heart) is of mesodermal origin. The stroma of all organs is of mesodermal origin[WP]." [Wikipedia:Parenchyma]
xref: EHDAA:3015
xref: EHDAA:3905
xref: EHDAA:3999
xref: EHDAA:4005
xref: EHDAA:6899
xref: EHDAA:6903
xref: EHDAA:6994
xref: EHDAA:8086
xref: EHDAA:9182
xref: EHDAA:9190
xref: EHDAA:9196
xref: EHDAA:9202
xref: FMA:45732
xref: ncithesaurus:Parenchyma
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000355
name: pharyngeal mucosa
alt_id: UBERON:0003344
def: "A mucosa that is part of a pharynx [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of pharynx" EXACT [OBOL:automatic]
synonym: "Mucous membrane of pharynx" EXACT [FMA:55031]
synonym: "mucous membrane of pharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of the pharynx" RELATED [BTO:0001047]
synonym: "organ mucosa of pharynx" EXACT [OBOL:automatic]
synonym: "pharynx mucosa" EXACT [OBOL:automatic]
synonym: "pharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "pharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "pharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa pharyngea" EXACT [FMA:55031, FMA:TA]
synonym: "tunica mucosa pharyngis" EXACT []
xref: BTO:0001047
xref: EMAPA:26957
xref: EMAPA:26965
xref: FMA:55031
xref: SCTID:362121003
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004785 ! respiratory system mucosa
relationship: part_of UBERON:0001042
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001042 ! chordate pharynx
[Term]
id: UBERON:0000358
name: blastocyst
def: "The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824, Wikipedia:Blastocyst]
synonym: "blastocystis" RELATED LATIN [Wikipedia:Blastocyst]
synonym: "blastula" RELATED [FMA:83041]
xref: BTO:0001099
xref: EFO:0000295
xref: EV:0100394
xref: FMA:83041
xref: GAID:1153
xref: http://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png
xref: MESH:A.16.254.085
xref: ncithesaurus:Blastocyst
xref: OGEM:000006
xref: SCTID:308837009
is_a: UBERON:0002050 ! embryonic structure
relationship: has_part UBERON:0000087 ! inner cell mass
relationship: part_of UBERON:0000307 ! blastula
[Term]
id: UBERON:0000359
name: preputial gland
def: "An exocrine gland that are located in front of the genitals of some mammals (including mice) and produce pheromones[WP]." [Wikipedia:Preputial_gland]
subset: organ_slim
synonym: "glandulae preputiales" EXACT [FMA:71652, FMA:TA]
synonym: "preputial glands" EXACT [FMA:71652]
synonym: "preputial glands set" EXACT [FMA:71652]
xref: FMA:71652
xref: ncithesaurus:Prepucial_Gland_MMHCC
xref: SCTID:278916008
is_a: UBERON:0001821 ! sebaceous gland
relationship: secretes UBERON:0003670
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: secretes UBERON:0003670 ! smegma
relationship: secretes UBERON:0003670 ! smegma
[Term]
id: UBERON:0000360
name: rectal gland
is_obsolete: true
consider: UBERON:0004757
consider: UBERON:0004758
consider: UBERON:0004759
consider: UBERON:0004760
[Term]
id: UBERON:0000361
name: red bone marrow
synonym: "medulla ossium rubra" RELATED [BTO:0001160]
synonym: "red marrow" RELATED [BTO:0001160]
xref: BTO:0001160
xref: FMA:74595
xref: SCTID:75330005
is_a: UBERON:0002371 ! bone marrow
[Term]
id: UBERON:0000362
name: renal medulla
def: "The renal medulla is the innermost part of the kidney. The renal medulla is split up into a number of sections, known as the renal pyramids. Blood enters into the kidney via the renal artery, which then splits up to form the arcuate arterioles. The arcuate arterioles each in turn branch into interlobular arterioles, which finally reach the glomeruli. At the glomerulus the blood reaches a highly disfavourable pressure gradient and a large exchange surface area, which forces the serum portion of the blood out of the vessel into the renal tubules. Flow continues through the renal tubules, including the proximal tubule, the Loop of Henle, and finally leaves the kidney by means of the collecting duct, leading to the renal ureter. The renal medulla (latin renes medulla = kidney middle) contains the structures of the nephrons responsible for maintaining the salt and water balance of the blood. The renal medulla is hypertonic to the filtrate in the nephron and aids in the reabsorption of water. [WP,unvetted]." [Wikipedia:Renal_medulla]
synonym: "kidney medulla" EXACT [OBOL:automatic]
synonym: "medulla of kidney" EXACT [OBOL:automatic]
synonym: "medulla renalis" EXACT [FMA:74268, FMA:TA]
synonym: "medullary pyramids" EXACT [FMA:74268]
synonym: "pyramides renales" EXACT [FMA:74268, FMA:TA]
synonym: "renal marrow" RELATED [BTO:0001167]
synonym: "renal medullae" EXACT [FMA:86327]
synonym: "renal medullae set" EXACT [FMA:86327]
synonym: "renal pyramids" EXACT [FMA:74268]
synonym: "renal pyramids set" EXACT [FMA:74268]
xref: BTO:0001167
xref: EMAPA:19279
xref: FMA:74268
xref: GAID:425
xref: galen:MedullaOfKidney
xref: http://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg
xref: MA:0000373
xref: MESH:A.05.810.453.466
xref: ncithesaurus:Renal_Medulla
xref: SCTID:30737000
is_a: UBERON:0000958 ! medulla
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002113
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0000363
name: reticuloendothelial system
def: "A part of the immune system that consists of the phagocytic cells located in reticular connective tissue. The cells are primarily monocytes and macrophages, and they accumulate in lymph nodes and the spleen. The Kupffer cells of the liver and tissue histiocytes are also part of the RES. A lymphoma of the reticuloendothelial system is called reticuloendotheliosis[WP]." [Wikipedia:Reticuloendothelial_system]
synonym: "lymphoreticular" RELATED [BioMart:BioMart]
synonym: "lymphoreticular system" EXACT [Wikipedia:Reticuloendothelial_system]
synonym: "mononuclear phagocyte system" EXACT [FMA:84189]
synonym: "RES" EXACT [Wikipedia:Reticuloendothelial_system]
xref: BTO:0001174
xref: EV:0100048
xref: FMA:84189
xref: GAID:1004
xref: MESH:A.15.382.812
xref: ncithesaurus:Reticuloendothelial_System
xref: SCTID:278874002
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0000364
name: rootlet
synonym: "fila radicularia" EXACT [FMA:76787, FMA:TA]
synonym: "Rootlets" EXACT [FMA:76787]
synonym: "Rootlets set" EXACT [FMA:76787]
xref: BTO:0001192
is_obsolete: true
[Term]
id: UBERON:0000365
name: urothelium
def: "The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [Wikipedia:Urothelium]
comment: consider merging with transitional epithelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium'
synonym: "uroepithelium" EXACT [FMA:67695]
xref: BTO:0003906
xref: EMAPA:28089
xref: FMA:67695
xref: GAID:935
xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Harnblase_Urothel.png
xref: MESH:A.10.272.850
xref: ncithesaurus:Urothelium
xref: SCTID:57789003
is_a: UBERON:0005910 ! transitional epithelium
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001008
intersection_of: UBERON:0005910 ! transitional epithelium
intersection_of: part_of UBERON:0001008 ! excretory system
relationship: part_of UBERON:0001008 ! excretory system
[Term]
id: UBERON:0000366
name: flexor muscle
def: "A muscle that when contracted acts to bend a joint or limb in the body." [BTO:0001257]
subset: vertebrate_core
synonym: "flexor" RELATED []
xref: BTO:0001257
xref: FMA:74559
xref: FMA:74999
xref: TAO:0005271
xref: ZFA:0005271
property_value: UBPROP:0000001 "A muscle that decreases the angle of a joint.[TAO]" xsd:string
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010977 ! flexor pre-muscle mass
relationship: part_of UBERON:0004708 ! limb/fin
[Term]
id: UBERON:0000368
name: adductor brevis
def: "The adductor brevis is a muscle in the thigh situated immediately behind the pectineus and adductor longus. It is somewhat triangular in form, and arises by a narrow origin from the outer surfaces of the superior and inferior rami of the pubis, between the gracilis and obturator externus. Its fibers, passing backward, lateralward, and downward, are inserted, by an aponeurosis, into the line leading from the lesser trochanter to the linea aspera and into the upper part of the linea aspera, immediately behind the pectineus and upper part of the adductor longus.[WP]." [Wikipedia:Adductor_brevis_muscle]
synonym: "adductor brevis muscle" EXACT []
synonym: "Musculus adductos brevis" EXACT [FMA:22442]
xref: BTO:0001288
xref: FMA:22442
xref: http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: OpenCyc:Mx4rv13lfJwpEbGdrcN5Y29ycA
xref: SCTID:181687007
is_a: UBERON:0004252 ! hindlimb stylopod muscle
is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip
relationship: has_muscle_insertion UBERON:0002504 {notes="the lesser trochanter and linea aspera of the femur", source="dbpedia"} ! lesser trochanter
relationship: has_muscle_nerve UBERON:0005465 {source="dbpedia"} ! obturator nerve
relationship: has_muscle_origin UBERON:0001275 {notes="anterior surface of the inferior ramus and body of the pubis", source="dbpedia"} ! pubis
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0000369
name: corpus striatum
def: "The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]." [Wikipedia:Corpus_striatum]
comment: The term has been used in a few different ways: * It is a pair of nuclear masses which form the basal ganglia, along with the subthalamic nucleus and the substantia nigra. * It may also refer to both the basal ganglia and internal capsule collectively.[2] * According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (also known as the lenticular nucleus) and the caudate nucleus * According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum
synonym: "striate body" RELATED [BTO:0001311]
synonym: "striated body" RELATED [BTO:0001311]
xref: BTO:0001311
xref: EFO:0000381
xref: EMAPA:17549
xref: EV:0100184
xref: FMA:77616
xref: GAID:667
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray656.png/200px-Gray656.png
xref: MESH:A.08.186.211.730.885.105.487
xref: ncithesaurus:Corpus_Striatum
xref: SCTID:279318005
xref: VHOG:0001175
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: develops_from UBERON:0010082 {evidence="definitional"} ! future corpus striatum
relationship: part_of UBERON:0002420 {source="MA"} ! basal ganglion
[Term]
id: UBERON:0000370
name: adductor magnus
def: "An adductor muscle that attaches to the pelvic bone and the femur. In humans, the adductor magnus is a large triangular muscle, situated on the medial side of the thigh. The portion which arises from the ischiopubic ramus (a small part of the inferior ramus of the pubis, and the inferior ramus of the ischium) is called the 'adductor magnesius portion', and the portion arising from the tuberosity of the ischium is called the 'hamstring portion'. The hamstring portion is not considered part of the hamstring group of muscles, but it is adjacent to it.[WP,generalized]." [Wikipedia:Adductor_magnus_muscle]
comment: Definition generalized to accommodate AAO class - "Origin by two heads that are separated by a ventral tendon of the M. semitendinosus. One head originates from the ventral border of the pubic portion of the pelvic rim. The other head originates from the ischiatic border of the pelvic rim. The ventral head fuses with accessory head from the M. semitendinosus and inserts along the ventro-medial border of the femur. The dorsal belly merges with the ventral and accessory heads and inserts along the medial surface of the femur." [AAO:0010040]
synonym: "adductor magnus muscle" EXACT []
synonym: "musculus adductor magnus" RELATED LATIN [Wikipedia:Adductor_magnus_muscle]
xref: AAO:0010040
xref: BTO:0001312
xref: FMA:22443
xref: galen:AdductorMagnus
xref: http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: OpenCyc:Mx4rvuSd6JwpEbGdrcN5Y29ycA
xref: SCTID:181688002
property_value: UBPROP:0000001 "Origin by two heads that are separated by a ventral tendon of the M. semitendinosus. One head originates from the ventral border of the pubic portion of the pelvic rim. The other head originates from the ischiatic border of the pelvic rim. The ventral head fuses with accessory head from the M. semitendinosus and inserts along the ventro-medial border of the femur. The dorsal belly merges with the ventral and accessory heads and inserts along the medial surface of the femur.[AAO]" xsd:string
is_a: UBERON:0004252 ! hindlimb stylopod muscle
is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip
relationship: has_muscle_insertion UBERON:0000981 {source="dbpedia"} ! femur
relationship: has_muscle_nerve UBERON:0001322 {source="dbpedia", notes="posterior branch of obturator nerve and sciatic nerve"} ! sciatic nerve
relationship: has_muscle_nerve UBERON:0005465 {source="dbpedia", notes="posterior branch of obturator nerve and sciatic nerve"} ! obturator nerve
relationship: has_muscle_origin UBERON:0001275 {source="dbpedia", notes="tuberosity of the ischium"} ! pubis
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0000371
name: syncytiotrophoblast
def: "outer syncytial layer of the trophoblast." [Wikipedia:Syncytiotrophoblast]
synonym: "syncitiotrophoblastus" RELATED LATIN [Wikipedia:Syncytiotrophoblast]
synonym: "syncytial trophoblast" EXACT [FMA:83040]
synonym: "syntrophoblast" RELATED []
synonym: "syntrophoblast layer" EXACT [ISBN10:0073040584]
xref: BTO:0001335
xref: EHDAA:129
xref: EHDAA:91
xref: EMAPA:16068
xref: FMA:83040
xref: http://upload.wikimedia.org/wikipedia/commons/d/df/Gray36.png
xref: ncithesaurus:Syncytiotrophoblast
xref: SCTID:256965005
is_a: UBERON:0002050 {source="FMA"} ! embryonic structure
relationship: part_of UBERON:0000088 {source="BTO"} ! trophoblast
relationship: part_of UBERON:0004364 {source="EMAPA"} ! ectoplacental cone
[Term]
id: UBERON:0000372
name: extensor digitorum brevis
def: "a muscle on the upper surface of the foot that helps extend digits 2 through 4." [Wikipedia:Extensor_digitorum_brevis_muscle]
synonym: "extensor digitorum brevis muscle" EXACT []
synonym: "musculus extensor digitorum brevis" RELATED LATIN [Wikipedia:Extensor_digitorum_brevis_muscle]
xref: BTO:0001337
xref: FMA:51140
xref: http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray441.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1241.png/200px-Gray1241.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray441.png/200px-Gray441.png
is_a: UBERON:0000311 {source="BTO"} ! extensor muscle
is_a: UBERON:0001498 ! muscle of foot
relationship: has_muscle_insertion UBERON:0003221 {source="dbpedia", notes="proximal dorsal region of middle phalanges 2 3 and 4"} ! phalanx
relationship: has_muscle_origin UBERON:0001450 {source="dbpedia", notes="dorsal surface of calcaneus"} ! calcaneus
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0000373
name: tapetum of corpus callosum
def: "On either side of the corpus collosum, the fibers radiate in the white substance and pass to the various parts of the cerebral cortex; those curving forward from the genu into the frontal lobe constitute the forceps anterior, and those curving backward into the occipital lobe, the forceps posterior. Between these two parts is the main body of the fibers which constitute the tapetum and extend laterally on either side into the temporal lobe, and cover in the central part of the lateral ventricle. [Wikipedia via Greys]" [Wikipedia:Tapetum_of_corpus_callosum]
comment: not to be confused with BTO:0001350 or GO:0048655-tapetal layer morphogenesis
synonym: "tapetum" BROAD INCONSISTENT [FMA:77208]
synonym: "tapetum corporis callosi" RELATED LATIN [Wikipedia:Tapetum_of_corpus_callosum]
xref: FMA:77208
xref: http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray733.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray733.png/200px-Gray733.png
xref: SCTID:279312006
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0000375
name: mandibular nerve
def: "the motor and sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the auricle, the external acoustic meatus, tympanic membrane, temporal region, the cheek, the skin overlying the mandible, the anterior portion of the tongue, the floor of the mouth, lower teeth and gingiva and transmits motor information from the muscles of mastication, the mylohyoid muscle and digastric muscle and the muscles tensor tympani and tensor veli palatini." [MP:0009800, Wikipedia:Mandibular_nerve]
synonym: "inferior maxillary nerve" EXACT [FMA:52996]
synonym: "mandibular division [V3]" EXACT [FMA:52996]
synonym: "mandibular division [Vc]" EXACT [FMA:52996]
synonym: "mandibular division of fifth cranial nerve" EXACT [FMA:52996]
synonym: "mandibular division of trigeminal nerve [Vc; V3]" EXACT [FMA:52996]
synonym: "mandibular nerve [V3]" EXACT [FMA:52996]
synonym: "mandibular nerve [Vc]" EXACT [FMA:52996]
synonym: "n. mandibularis" RELATED LATIN [Wikipedia:Mandibular_nerve]
synonym: "nervus mandibularis" RELATED [BTO:0001375]
synonym: "nervus mandibularis [v3]" EXACT [FMA:52996, FMA:TA]
synonym: "nervus mandibularis [Vc; V3]" EXACT [FMA:52996]
synonym: "nervus mandibularis [vc]" EXACT [FMA:52996, FMA:TA]
synonym: "ramus mandibularis (ramus V3)" EXACT [AAO:0010688]
synonym: "third division of fifth cranial nerve" EXACT [FMA:52996]
synonym: "third division of trigeminal nerve" EXACT [FMA:52996]
synonym: "trigeminal V nerve mandibular division" EXACT [MA:0001101]
xref: AAO:0010688
xref: AAO:0010703
xref: BTO:0001375
xref: EHDAA2:0002086
xref: FMA:52996
xref: GAID:834
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray781.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray781.png/200px-Gray781.png
xref: MA:0001101
xref: MESH:A.08.800.800.120.760.500
xref: ncithesaurus:Inferior_Maxillary_Nerve
xref: OpenCyc:Mx4rvcQKSpwpEbGdrcN5Y29ycA
xref: SCTID:280212008
xref: VHOG:0001345
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0004732 ! segmental subdivision of nervous system
relationship: branch_of UBERON:0001645 ! trigeminal nerve
[Term]
id: UBERON:0000376
name: hindlimb stylopod
def: "In humans the thigh is the area between the pelvis and the knee. Anatomically, it is part of the lower limb. The single bone in the thigh is called the femur. This bone is very thick and strong (due to the high proportion of cortical bone), and forms a ball and socket joint at the hip, and a condylar joint at the knee. [WP,unvetted]." [Wikipedia:Thigh]
comment: Naming conventions for pod terms under discussion within phenoscape group. TODO - add distinct term for skeleton and place AAO class here
synonym: "femur" RELATED LATIN [Wikipedia:Thigh]
synonym: "fore propodium" EXACT [AAO:0000199]
synonym: "forelimb propodium" EXACT []
synonym: "hind limb stylopod" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "hindlimb stylopodium" EXACT [OBOL:automatic]
synonym: "inferior member stylopod" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "proximal segment of free lower limb" EXACT [FMA:24967]
synonym: "stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb" EXACT []
synonym: "thigh" EXACT []
synonym: "upper leg" EXACT [MA:0000052]
xref: AAO:0000199
xref: BTO:0001376
xref: EFO:0001943
xref: EHDAA2:0002130
xref: EHDAA:5171
xref: EHDAA:6200
xref: EMAPA:17499
xref: FMA:24967
xref: GAID:50
xref: galen:Thigh
xref: http://upload.wikimedia.org/wikipedia/commons/4/4b/Gray1238.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4b/Gray1238.png/200px-Gray1238.png
xref: MA:0000052
xref: MESH:A.01.378.610.750
xref: ncithesaurus:Thigh
xref: OpenCyc:Mx4rvVjN7JwpEbGdrcN5Y29ycA
xref: SCTID:302544002
xref: VHOG:0000349
property_value: UBPROP:0000001 "Segment of the forearm corresponding to the humerus.[AAO]" xsd:string
is_a: UBERON:0002472 ! stylopod
is_a: UBERON:0008784 ! lower limb segment
relationship: part_of UBERON:0002103
intersection_of: UBERON:0002472 ! stylopod
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0000978 {source="MA"} ! leg
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0000377
name: maxillary nerve
def: "the sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the palate, upper teeth and gingiva, the skin between the palpebral fissure and the mouth, and from the nasal cavity and maxillary sinuses." [MP:0009799, Wikipedia:Maxillary_nerve]
synonym: "maxillary division [V2]" EXACT [FMA:52724]
synonym: "maxillary division [Vb]" EXACT [FMA:52724]
synonym: "maxillary division of fifth cranial nerve" EXACT [FMA:52724]
synonym: "maxillary division of trigeminal nerve (Vb; V2)" EXACT [FMA:52724]
synonym: "maxillary nerve [V2]" EXACT [FMA:52724]
synonym: "maxillary nerve [Vb]" EXACT [FMA:52724]
synonym: "n. maxillaris" RELATED LATIN [Wikipedia:Maxillary_nerve]
synonym: "nervus maxillaris" RELATED [BTO:0001378]
synonym: "nervus maxillaris (Vb; V2)" EXACT [FMA:52724]
synonym: "nervus maxillaris [v2]" EXACT [FMA:52724, FMA:TA]
synonym: "nervus maxillaris [vb]" EXACT [FMA:52724, FMA:TA]
synonym: "ramus maxillaris (ramus V2)" EXACT [AAO:0010670]
synonym: "second division of fifth cranial nerve" EXACT [FMA:52724]
synonym: "second division of trigeminal nerve" EXACT [FMA:52724]
synonym: "trigeminal V nerve maxillary division" EXACT [MA:0001103]
xref: AAO:0010670
xref: BTO:0001378
xref: EHDAA2:0002087
xref: FMA:52724
xref: GAID:836
xref: http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray779.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray779.png/200px-Gray779.png
xref: MA:0001103
xref: MESH:A.08.800.800.120.760.550
xref: OpenCyc:Mx4rvWNU9JwpEbGdrcN5Y29ycA
xref: SCTID:280211001
xref: VHOG:0001346
property_value: UBPROP:0000001 "Medial ramus (sensory) of the trigeminal nerve.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of trunk maxillary-mandibularis (AAO:0010669)[AAO]" xsd:string
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0004732 ! segmental subdivision of nervous system
relationship: branch_of UBERON:0001645 ! trigeminal nerve
[Term]
id: UBERON:0000378
name: tongue muscle
def: "the muscular portion of the tongue." [MP:0004136, Wikipedia:Muscles_of_tongue]
synonym: "muscle of tongue" EXACT [FMA:46689]
synonym: "musculi linguae" RELATED LATIN [Wikipedia:Muscles_of_tongue]
xref: BTO:0001386
xref: FMA:46689
xref: http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray1019.png
xref: ncithesaurus:Tongue_Muscle
xref: SCTID:244781004
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002376 ! muscle of head
relationship: part_of UBERON:0001723
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001723 ! tongue
relationship: has_developmental_contribution_from UBERON:0005594 {source="ISBN10:1607950324"} ! head somite
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0000379
name: tracheal mucosa
synonym: "mucosa of organ of trachea" EXACT [OBOL:automatic]
synonym: "mucosa of organ of windpipe" EXACT [OBOL:automatic]
synonym: "mucosa of trachea" EXACT [OBOL:automatic]
synonym: "mucosa of windpipe" EXACT [OBOL:automatic]
synonym: "Mucous membrane of trachea" EXACT [FMA:7471]
synonym: "mucous membrane of trachea" EXACT [OBOL:automatic]
synonym: "mucous membrane of windpipe" EXACT [OBOL:automatic]
synonym: "organ mucosa of trachea" EXACT [OBOL:automatic]
synonym: "organ mucosa of windpipe" EXACT [OBOL:automatic]
synonym: "trachea mucosa" EXACT [OBOL:automatic]
synonym: "trachea mucosa of organ" EXACT [OBOL:automatic]
synonym: "trachea mucous membrane" EXACT [OBOL:automatic]
synonym: "trachea organ mucosa" EXACT [OBOL:automatic]
synonym: "Tracheal mucous membrane" EXACT [FMA:7471]
synonym: "Tunica mucosa (tracheae)" EXACT [FMA:7471]
synonym: "tunica mucosa tracheae" EXACT [FMA:7471, FMA:TA]
synonym: "windpipe mucosa" EXACT [OBOL:automatic]
synonym: "windpipe mucosa of organ" EXACT [OBOL:automatic]
synonym: "windpipe mucous membrane" EXACT [OBOL:automatic]
synonym: "windpipe organ mucosa" EXACT [OBOL:automatic]
xref: BTO:0001390
xref: FMA:7471
xref: SCTID:660006
is_a: UBERON:0004785 ! respiratory system mucosa
relationship: part_of UBERON:0001005
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001005 ! respiratory airway
relationship: part_of UBERON:0001005 ! respiratory airway
[Term]
id: UBERON:0000380
name: tuber
comment: undefined in FMA. BTO and MIAA refers to plant structure only
xref: BTO:0001400
xref: OpenCyc:Mx4raeDj5Cw8QdiT7e8pb2JzAA
is_obsolete: true
[Term]
id: UBERON:0000381
name: detrusor
def: "The outer largely longitudinally arranged musculature of the bladder wall[BTO]. The fibers of the detrusor muscle arise from the posterior surface of the body of the pubis in both sexes (musculi pubovesicales), and in the male from the adjacent part of the prostate and its capsule. These fibers pass, in a more or less longitudinal manner, up the inferior surface of the bladder, over its apex, and then descend along its fundus to become attached to the prostate in the male, and to the front of the vagina in the female. At the sides of the bladder the fibers are arranged obliquely and intersect one another[WP]." [BTO:0001453, Wikipedia:Detrusor_urinae_muscle]
synonym: "detrusor muscle" EXACT [BTO:0001453]
synonym: "detrusor muscle of bladder" EXACT [EMAPA:28637]
synonym: "detrusor urinae muscle" EXACT [Wikipedia:Detrusor_urinae_muscle]
synonym: "muscularis propria" BROAD []
synonym: "muscularis propria of the urinary bladder" EXACT [Wikipedia:Detrusor_urinae_muscle]
synonym: "musculus detrusor vesicae urinariae" RELATED LATIN [Wikipedia:Detrusor_urinae_muscle]
synonym: "urinary bladder detrussor smooth muscle" RELATED [MA:0001698]
xref: BTO:0001453
xref: EMAPA:28637
xref: FMA:68018
xref: http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_bladder.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_bladder.jpg/200px-Illu_bladder.jpg
xref: MA:0001698
xref: ncithesaurus:Muscularis_Propria
xref: SCTID:86915006
is_a: UBERON:0004228 ! urinary bladder smooth muscle
relationship: has_muscle_insertion UBERON:0000996 {gci_relation="part_of", source="dbpedia-modified", gci_filler="UBERON:0003100"} ! vagina
relationship: has_muscle_insertion UBERON:0002367 {source="dbpedia-modified"} ! prostate gland
relationship: has_muscle_origin UBERON:0001275 {source="dbpedia", notes="posterior surface of the body of the pubis"} ! pubis
relationship: part_of UBERON:0001256 ! wall of urinary bladder
[Term]
id: UBERON:0000382
name: apocrine sweat gland
def: "Apocrine sweat glands are sweat glands composed of a coiled secretory portion located at the junction of the dermis and subcutaneous fat, from which a straight portion inserts and secretes into the infundibular portion of the hair follicle. In humans, apocrine sweat glands are found only in certain locations of the body: the axillae (armpits), the areola of the nipples, and the genitoanal region. The ducts of apocrine glands open into the canals of hair follicles. The stimulus for the secretion of apocrine sweat glands is adrenaline, which is a hormone carried in the blood[WP]." [Wikipedia:Apocrine_sweat_gland]
comment: A note of confusion is the difference between apocrine secretion and apocrine sweat gland. Apocrine secretion refers to the apical loss of a cell's membrane to create cell blebs, thus creating a secretory product. Apocrine sweat gland refers to a structure, not a secretion process. Apocrine sweat glands actually use a merocrine type secretion, or that mediated by exocytosis of secretory granules. When "apocrine gland" is used without the word sweat, it is often referring to the gland which uses merocrine secretion, and not the secretion method. The important difference in apocrine sweat gland structure is its larger lumen, compared to the more narrow lumen of the eccrine sweat gland.
subset: organ_slim
xref: BTO:0001458
xref: FMA:59155
xref: MESH:A.10.336.899.206
xref: ncithesaurus:Apocrine_Sweat_Gland
xref: SCTID:399916008
property_value: RO:0002161 NCBITaxon:9822
is_a: UBERON:0001820 ! sweat gland
is_a: UBERON:0008974 ! apocrine gland
[Term]
id: UBERON:0000383
name: musculature of body
def: "Anatomical system that consists of all the muscles of the body[VSAO, modified]." [VSAO:0000033]
comment: AO notes: we place the MA term musculature here, rather than under uberon:musculature, as this seems more appropriate given the structure of MA
synonym: "muscle system" EXACT []
synonym: "muscle system of body" EXACT []
synonym: "muscular system" EXACT [FMA:72954]
synonym: "musculature system" EXACT [BILA:0000088]
synonym: "muskelsystem" RELATED [BTO:0001485]
synonym: "set of all muscles" EXACT [FMA:72954]
synonym: "Set of muscles of body" EXACT [FMA:72954]
synonym: "vertebrate muscular system" EXACT [BTO:0001369]
xref: AAO:0000307
xref: BILA:0000088
xref: BTO:0001369
xref: BTO:0001485
xref: EFO:0000801
xref: FBbt:00005069
xref: FMA:72954
xref: MA:0002888
xref: MAT:0000025
xref: MIAA:0000025
xref: VSAO:0000033
xref: XAO:0004042
property_value: RO:0002161 NCBITaxon:6040
property_value: UBPROP:0000001 "Anatomical system that consists of the muscles of the body.[VSAO]" xsd:string
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0000385
name: labial gland
comment: the label 'labial gland' refers to two distinct classes. From the BTO def: 1. One of the small tubular mucous and serous glands lying beneath the mucous membrane of the lips.n2. A salivary gland, or modification thereof, opening at the base of the labium in certain insects.
synonym: "glandulae labiales" EXACT [FMA:71613, FMA:TA]
synonym: "Labial glands" EXACT [FMA:71613]
synonym: "Labial glands set" EXACT [FMA:71613]
xref: BTO:0001548
is_obsolete: true
[Term]
id: UBERON:0000387
name: meniscus
def: "crescent-shaped fibrocartilaginous structure present in the knee, acromioclavicular, sternoclavicular, and temporomandibular joints[2] that, in contrast to articular disks, only partly divides a joint cavity.[3] A small meniscus also occurs in the radio-carpal joint." [Wikipedia:Meniscus_(anatomy)]
synonym: "articular disc" EXACT [FMA:76690]
xref: BTO:0001592
xref: EV:0100145
xref: FMA:76690
xref: galen:Meniscus
xref: ncithesaurus:Meniscus
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000388
name: epiglottis
def: "a flap of elastic cartilage tissue covered with a mucous membrane, attached to the entrance of the larynx. It projects obliquely upwards behind the tongue and the hyoid bone, pointing dorsally." [Wikipedia:Epiglottis]
comment: Editor note: refine definition to better distinguish cartilage from the whole structure
synonym: "Pronounced" RELATED LATIN [Wikipedia:Epiglottis]
xref: BTO:0001628
xref: EHDAA2:0004081
xref: EMAPA:18289
xref: FMA:55130
xref: GAID:111
xref: http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray958.png
xref: MESH:A.02.165.507.411
xref: ncithesaurus:Epiglottis
xref: OpenCyc:Mx4rvVjxE5wpEbGdrcN5Y29ycA
xref: SCTID:245502004
property_value: RO:0002161 NCBITaxon:8782
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003115 {source="EHDAA2"} ! pharyngeal arch 4
relationship: part_of UBERON:0001051 ! hypopharynx
[Term]
id: UBERON:0000389
name: lens cortex
synonym: "cortex of lens" EXACT [FMA:58970]
xref: BTO:0001632
xref: FMA:58970
xref: MESH:A.09.371.509.225
xref: SCTID:280626006
is_a: UBERON:0001851 ! cortex
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000965 ! lens of camera-type eye
[Term]
id: UBERON:0000390
name: lens nucleus
def: "The core of the crystalline lens, surrounded by the cortex." [BTO:0001633]
comment: editor note: needs checked; cf nucleus in GO
synonym: "nucleus of lens" EXACT [FMA:58971]
xref: BTO:0001633
xref: FMA:58971
xref: MESH:A.09.371.509.670
xref: SCTID:280628007
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000965 ! lens of camera-type eye
[Term]
id: UBERON:0000391
name: leptomeninx
def: "pia mater or arachnoid mater." [Wikipedia:Leptomeninges]
comment: AO notes: in FMA/NIF this is a superclass of PM/AM - in BTO it is the mereological sum. We go with superclass here, as we are naming the class in the singular. Editor notes: check relationship to secondary meninx
subset: organ_slim
synonym: "arachnoidea mater et pia mater" RELATED [BTO:0001634]
synonym: "leptomeninges" EXACT PLURAL [NIF_GrossAnatomy:nlx_anat_090207]
synonym: "pia-arachnoid" RELATED [BTO:0001634]
xref: BTO:0001634
xref: FMA:231515
xref: ncithesaurus:Leptomeninges
xref: NIF_GrossAnatomy:nlx_anat_090207
xref: SCTID:362303006
is_a: UBERON:0002360 ! meninx
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0007646 ! endomeninx
[Term]
id: UBERON:0000392
name: longissimus muscle
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus]
synonym: "intermediate column of erector spinae" RELATED []
synonym: "longissimus" EXACT [FMA:77178]
synonym: "musculus longissimus" EXACT [BTO:0001648]
synonym: "musculus longissimus" RELATED LATIN [Wikipedia:Longissimus]
xref: BTO:0001648
xref: FMA:77178
xref: http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png
xref: SCTID:244858006
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column
relationship: has_muscle_insertion UBERON:0001077 {source="dbpedia"} ! transverse process of vertebra
relationship: has_muscle_nerve UBERON:0006839 {source="dbpedia"} ! posterior ramus of spinal nerve
relationship: has_muscle_origin UBERON:0001077 {source="dbpedia"} ! transverse process of vertebra
relationship: part_of UBERON:0002462 {source="BTO"} ! erector spinae muscle group
[Term]
id: UBERON:0000395
name: cochlear ganglion
def: "group of nerve cells that serve the sense of hearing by sending a representation of sound from the cochlea to the brain. The cell bodies of the spiral ganglion neurons are found in the spiral structure of the cochlea[WP]. the group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]." [MP:0002855, Wikipedia:Spiral_ganglion]
comment: Editor notes: in BTO this is part of the cochlear modiolus, but this leads to the CG being in both the nervous and skeletal systems
synonym: "Corti's ganglion" EXACT [FMA:53445]
synonym: "ganglion cochlearis" RELATED [BTO:0001688]
synonym: "ganglion of Corti" EXACT [FMA:53445]
synonym: "ganglion spirale" RELATED LATIN [Wikipedia:Spiral_ganglion]
synonym: "ganglion spirale cochleae" RELATED [BTO:0001688]
synonym: "spiral ganglion" EXACT [FMA:53445]
synonym: "spiral ganglion of cochlea" RELATED [BTO:0001688]
synonym: "vestibulocochlear VIII ganglion cochlear component" EXACT [MA:0001085]
xref: BTO:0001688
xref: EHDAA2:0002198
xref: FMA:53445
xref: GAID:722
xref: http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray903.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray903.png/200px-Gray903.png
xref: MA:0001085
xref: MESH:A.08.340.390.800
xref: SCTID:368955007
xref: VHOG:0001183
is_a: UBERON:0001714 {source="FMA"} ! cranial ganglion
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002827 {source="MA"} ! auditory ganglion
relationship: surrounded_by UBERON:0006723 {source="BTO-modified"} ! cochlear modiolus
[Term]
id: UBERON:0000396
name: vallate papilla
alt_id: UBERON:0002927
def: "Any one of the largest papilla of the tongue, 8 to 12 in number, arranged in the form of a V anterior to the sulcus terminalis of the tongue" [BTO:0001705, Wikipedia:Vallate_papilla]
synonym: "circumvallate papilla" EXACT [MA:0001594]
synonym: "circumvallate papilla of tongue" EXACT [FMA:54822]
synonym: "circumvallate papilla of tongue" EXACT []
synonym: "papilla vallatae" EXACT PLURAL [FMA:71449, FMA:TA]
synonym: "Vallate papilla of tongue" EXACT []
xref: BTO:0001705
xref: EMAPA:18271
xref: EMAPA:18654
xref: EMAPA:18871
xref: FMA:54822
xref: http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1015.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray1015.png/200px-Gray1015.png
xref: MA:0001594
xref: ncithesaurus:Circumvallate_Papilla
xref: NIF_GrossAnatomy:birnlex_4106_2
xref: SCTID:69517000
is_a: UBERON:0001726 ! papilla of tongue
[Term]
id: UBERON:0000397
name: colonic epithelium
def: "An epithelium that is part of a colon [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "colon epithelial tissue" EXACT [OBOL:automatic]
synonym: "Colon epithelium" EXACT [FMA:17302]
synonym: "colon epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of colon" EXACT [OBOL:automatic]
synonym: "epithelial tissue of large bowel" EXACT [OBOL:automatic]
synonym: "epithelium of colon" EXACT [OBOL:automatic]
synonym: "epithelium of large bowel" EXACT [OBOL:automatic]
synonym: "large bowel epithelial tissue" EXACT [OBOL:automatic]
synonym: "large bowel epithelium" EXACT [OBOL:automatic]
synonym: "posterior intestine epithelium" EXACT [ZFA:0005128]
xref: BTO:0001709
xref: FMA:17302
xref: SCTID:42978003
xref: TAO:0005128
xref: ZFA:0005128
property_value: UBPROP:0000001 "Intestinal epithelium which lines the lumen of the posterior intestine.[TAO]" xsd:string
is_a: UBERON:0001278 ! epithelium of large intestine
relationship: part_of UBERON:0001155
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001155 ! colon
relationship: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0000398
name: cartilage tissue of sternum
def: "Any portion of cartilage tissue that is part of the sternum" [UBERON:cjm]
comment: Examples: cartilage of manubrium, cartilage of xiphoid process
synonym: "cartilage of sternum" EXACT [FMA:32567]
xref: FMA:32567
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003837 ! thoracic segment connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000975
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0000975 ! sternum
relationship: part_of UBERON:0000975 ! sternum
[Term]
id: UBERON:0000399
name: jejunal mucosa
alt_id: UBERON:0003349
def: "A mucosa that is part of a jejunum [Obol]." [OBOL:automatic]
synonym: "jejunal mucous membrane" EXACT [FMA:14949]
synonym: "jejunum mucosa" EXACT [FMA:14949]
synonym: "jejunum mucosa of organ" EXACT [OBOL:automatic]
synonym: "jejunum mucous membrane" EXACT [OBOL:automatic]
synonym: "jejunum organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of jejunum" EXACT [FMA:14949]
synonym: "mucosa of organ of jejunum" EXACT [OBOL:automatic]
synonym: "mucous membrane of jejunum" EXACT [OBOL:automatic]
synonym: "organ mucosa of jejunum" EXACT [OBOL:automatic]
xref: BTO:0001742
xref: EMAPA:27109
xref: EMAPA:27347
xref: FMA:14949
xref: SCTID:362151009
is_a: UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0002115
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002115 ! jejunum
relationship: part_of UBERON:0002115 ! jejunum
[Term]
id: UBERON:0000400
name: jejunal epithelium
xref: BTO:0001743
xref: FMA:17232
xref: SCTID:57300004
is_a: UBERON:0001902 {source="BTO"} ! epithelium of small intestine
relationship: part_of UBERON:0002115
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002115 ! jejunum
relationship: part_of UBERON:0002115 ! jejunum
relationship: part_of UBERON:0008343 {source="FMA"} ! intestinal villus of jejunum
[Term]
id: UBERON:0000401
name: mandibular ramus
def: "The ramus of the mandible (perpendicular portion) is quadrilateral in shape, and has two surfaces, four borders, and two processes[WP]." [Wikipedia:Ramus_of_the_mandible]
synonym: "lower ramus" RELATED [Wikipedia:Ramus_of_the_mandible]
synonym: "mandible ramus" EXACT [MA:0002815]
synonym: "rami mandibulae" RELATED PLURAL [Wikipedia:Ramus_of_the_mandible]
synonym: "ramus mandibulae" RELATED PLURAL [Wikipedia:Ramus_of_the_mandible]
synonym: "ramus mandibulae" RELATED LATIN [Wikipedia:Ramus_of_the_mandible]
synonym: "ramus of mandible" EXACT [FMA:52828]
xref: BTO:0001751
xref: EMAPA:25100
xref: FMA:52828
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png
xref: MA:0002815
xref: SCTID:361739000
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0000402
name: nasal vestibule
def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [Wikipedia:Nasal_vestibule]
synonym: "vestibular part of nasal cavity" EXACT [FMA:59644]
synonym: "vestibulum nasale" RELATED [BTO:0001761]
synonym: "vestibulum nasi" RELATED LATIN [Wikipedia:Nasal_vestibule]
synonym: "vestibulum nasi" RELATED [BTO:0001761]
xref: BTO:0001761
xref: FMA:59644
xref: http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray994.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Gray994.png/200px-Gray994.png
xref: SCTID:278940000
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001707 ! nasal cavity
[Term]
id: UBERON:0000403
name: scalp
def: "The scalp is the anatomical area bordered by the face anteriorly and the neck to the sides and posteriorly. [WP,unvetted]." [Wikipedia:Scalp]
synonym: "scalpus" RELATED LATIN [Wikipedia:Scalp]
xref: BTO:0001809
xref: FMA:46494
xref: GAID:80
xref: galen:Scalp
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Layers_of_the_scalp_and_meninges.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Double_cowlick.jpg/200px-Double_cowlick.jpg
xref: MESH:A.01.456.810
xref: ncithesaurus:Scalp
xref: OpenCyc:Mx4rwNtaz5wpEbGdrcN5Y29ycA
xref: SCTID:181480002
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0000407
name: sympathetic trunk
def: "One of a a paired bundle of nerve fibers that run from the base of the skull to the coccyx." [Wikipedia:Sympathetic_trunk]
synonym: "gangliated cord" EXACT [Wikipedia:Sympathetic_trunk]
synonym: "sympathetic chain" EXACT [FMA:6258]
synonym: "sympathetic ganglionic chain" EXACT [Wikipedia:Sympathetic_trunk]
synonym: "truncus sympathicus" RELATED LATIN [Wikipedia:Sympathetic_trunk]
xref: AAO:0010791
xref: BTO:0001834
xref: EV:0100374
xref: FMA:6258
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png
xref: SCTID:181099004
xref: XAO:0000211
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000013 ! sympathetic nervous system
[Term]
id: UBERON:0000408
name: vertebral ganglion
synonym: "Intermediate ganglion" EXACT [FMA:6572]
xref: BTO:0001835
xref: FMA:6572
xref: SCTID:176596009
is_a: UBERON:0004732 ! segmental subdivision of nervous system
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0000409
name: serous gland
def: "glands that secrete watery albuminous material that often contains enzymes." [MP:0008052]
subset: organ_slim
xref: BTO:0001837
xref: FMA:62889
is_a: UBERON:0002365 ! exocrine gland
[Term]
id: UBERON:0000410
name: bronchial mucosa
def: "A mucosa that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "bronchi mucosa" EXACT [OBOL:automatic]
synonym: "bronchi mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchi mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchi organ mucosa" EXACT [OBOL:automatic]
synonym: "bronchial trunk mucosa" EXACT [OBOL:automatic]
synonym: "bronchial trunk mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchial trunk mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchial trunk organ mucosa" EXACT [OBOL:automatic]
synonym: "bronchus mucosa" EXACT [OBOL:automatic]
synonym: "bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bronchi" EXACT [OBOL:automatic]
synonym: "mucosa of bronchial trunk" EXACT [OBOL:automatic]
synonym: "mucosa of bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchi" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchial trunk" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchi" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchial trunk" EXACT [OBOL:automatic]
synonym: "Mucous membrane of bronchus" EXACT [FMA:62652]
synonym: "mucous membrane of bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchi" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchial trunk" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchus" EXACT [OBOL:automatic]
synonym: "tunica mucosa bronchi" EXACT [FMA:62652, FMA:TA]
xref: BTO:0001846
xref: FMA:62652
xref: SCTID:30802009
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004785 ! respiratory system mucosa
relationship: part_of UBERON:0002185
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0000411
name: visual cortex
def: "Area of the occipital lobe concerned with vision." [MESH:A.08.186.211.730.885.213.571.735]
comment: Editor note: merge with primary visual cortex? FMA and BTO treat as distinct
synonym: "striate cortex" RELATED [MESH:A.08.186.211.730.885.213.571.735]
synonym: "V1" RELATED [Wikipedia:Visual_cortex]
xref: BTO:0001857
xref: EFO:0000916
xref: EV:0100171
xref: FMA:242644
xref: GAID:679
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Brodmann_areas_17_18_19.png/200px-Brodmann_areas_17_18_19.png
xref: MESH:A.08.186.211.730.885.213.571.735
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0002021 {source="BTO"} ! occipital lobe
[Term]
id: UBERON:0000412
name: dermal papilla
def: "small, nipple-like extensions (or interdigitations) of the dermis into the epidermis. They can be observed at the surface of the skin in hands and feet as epidermal or papillary ridges (colloquially known as fingerprints). The dermal papillae nourishes all hair follicles and bring food and oxygen to the lower layers of epidermal cells. The pattern of ridges they produce in hands and feet are inherited features that are developed before birth. They remain unaltered (except size) throughout life, and are therefore used for fingerprints. The dermal papillae are part of the uppermost layer of the dermis, the papillary dermis, and the ridges they form greatly increase the surface area between the dermis and epidermis. Because the dermis' main function is to support the epidermis, this greatly increases the exchange of oxygen, nutrients, and waste products between these two layers. Additionally, the increase in surface area prevent the dermal and epidermal layers from separating from each others by strengthening the junction between them. With age, the papillae tend to flatten and sometimes increase in numbers. Dermal papillae also play a pivotal role in hair formation, growth and, cycling" [Wikipedia:Dermal_papillae]
comment: Consider adding grouping class for TAO:0001995
synonym: "dermal papilla cell" RELATED [BTO:0001858]
synonym: "dermal papillae" EXACT PLURAL []
synonym: "DPC" RELATED [BTO:0001858]
synonym: "follicular papilla" EXACT [FMA:70737]
synonym: "hair follicle dermal papilla" RELATED [MP:0010687]
synonym: "papilla corii" RELATED [BTO:0001858]
synonym: "papilla dermatis" RELATED [BTO:0001858]
synonym: "papilla dermis" RELATED [BTO:0001858]
synonym: "papilla of corium" RELATED [BTO:0001858]
synonym: "papillae dermis" RELATED LATIN [Wikipedia:Dermal_papillae]
synonym: "skin papilla" RELATED [BTO:0001858]
xref: BTO:0001858
xref: FMA:70737
xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Skin.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Skin.jpg/200px-Skin.jpg
xref: ncithesaurus:Dermal_Papilla
xref: SCTID:320101005
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001992 ! papillary layer of dermis
[Term]
id: UBERON:0000414
name: mucous gland
def: "Mucous glands, found in several different parts of the body, typically stain lighter than serous glands during standard histological preparation. Most are multicellular, but goblet cell are single-celled glands. [WP,unvetted]." [Wikipedia:Mucous_gland]
subset: organ_slim
synonym: "glandula mucosa" RELATED LATIN [Wikipedia:Mucous_gland]
synonym: "glandula mucosa" RELATED [BTO:0001979]
synonym: "muciparous gland" RELATED [BTO:0001979]
xref: AAO:0010601
xref: BTO:0001979
xref: FMA:62888
xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray1021.png/200px-Gray1021.png
is_a: UBERON:0002365 ! exocrine gland
relationship: secretes UBERON:0000912 ! mucus
[Term]
id: UBERON:0000415
name: artery wall
def: "An anatomical wall that is part of an artery [Obol]." [OBOL:automatic]
synonym: "Arterial wall" EXACT [FMA:14155]
synonym: "wall of artery" EXACT [FMA:14155]
xref: BTO:0002009
xref: FMA:14155
xref: galen:ArterialWall
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001637
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0001637 ! artery
relationship: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0000416
name: subdural space
def: "A narrow fluid-containing space, often only a potential space, between the dura mater and the arachnoid." [BTO:0002082, PMID:8421539, Wikipedia:Subdural_space]
comment: Consider obsoleting - see PMID:8421539
synonym: "cavum subdurale" RELATED [BTO:0002082]
synonym: "spatium subdurale" RELATED [BTO:0002082]
synonym: "spatium subdurale, cavum subdurale" RELATED LATIN [Wikipedia:Subdural_space]
synonym: "subdural cavity" RELATED [BTO:0002082]
synonym: "subdural cleavage" RELATED [BTO:0002082]
synonym: "subdural cleft" RELATED [BTO:0002082]
xref: BTO:0002082
xref: FMA:83803
xref: GAID:692
xref: http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray769-en.svg
xref: MESH:A.08.186.566.395.687
xref: SCTID:362308002
is_a: UBERON:0000464 ! anatomical space
relationship: adjacent_to UBERON:0002362 ! arachnoid mater
relationship: adjacent_to UBERON:0002363 ! dura mater
[Term]
id: UBERON:0000417
name: primitive endoderm
alt_id: UBERON:0003226
subset: early_development
xref: BTO:0002123
xref: EHDAA:44
xref: EHDAA:79
xref: EMAPA:16051
xref: EMAPA:16063
xref: FMA:85520
is_a: UBERON:0000925 ! endoderm
[Term]
id: UBERON:0000418
name: tubercle
is_obsolete: true
[Term]
id: UBERON:0000420
name: myoepithelium
def: "An epithelium consisting of myopethelial cells, which are contractile cells resembling smooth muscle cells that are present in glands, notably the mammary gland, and aid in secretion. This cell has long weaving dendritic processes containing myofilament[CL]." [CL:0000185, Wikipedia:Myoepithelial_cell]
synonym: "myo-epithelium" EXACT [FMA:67805]
synonym: "myoepitheliocytus" RELATED LATIN [Wikipedia:Myoepithelial_cell]
xref: BTO:0002308
xref: FMA:67805
is_a: UBERON:0000488 ! atypical epithelium
[Term]
id: UBERON:0000423
name: eccrine sweat gland
subset: organ_slim
synonym: "eccrine gland" EXACT [FMA:59154]
xref: BTO:0002323
xref: FMA:59154
xref: GAID:945
xref: MESH:A.10.336.899.480
xref: ncithesaurus:Eccrine_Sweat_Gland
xref: SCTID:361699008
is_a: UBERON:0001820 ! sweat gland
[Term]
id: UBERON:0000424
name: gastric pit
alt_id: UBERON:0000425
def: "Gastric pits are indentations in the stomach which denote entrances to the gastric glands. They are deeper in the pylorus than they are in the other parts of the stomach. The human stomach has several million of these pits." [Wikipedia:Gastric_pits]
synonym: "foveola gastrica" RELATED [BTO:0002364]
synonym: "foveolae gastricae" EXACT PLURAL [FMA:76583, FMA:TA]
synonym: "foveolae gastricae" RELATED LATIN [Wikipedia:Gastric_pits]
synonym: "gastric foveola" EXACT [FMA:62947]
xref: BTO:0002364
xref: FMA:62947
xref: http://upload.wikimedia.org/wikipedia/commons/7/73/Illu_stomach_layers.jpg
xref: ncithesaurus:Gastric_Pit
xref: SCTID:268426007
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001199 {source="BTO"} ! mucosa of stomach
[Term]
id: UBERON:0000426
name: extravillous trophoblast
synonym: "intermediate trophoblast" EXACT [FMA:86561]
synonym: "interstitial trophoblast" RELATED [BTO:0002366]
xref: BTO:0002366
xref: FMA:86561
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000427
name: cytotrophoblastic cell
is_obsolete: true
[Term]
id: UBERON:0000428
name: prostate epithelium
alt_id: UBERON:0002452
def: "the prostate epithelium." [MP:0001168]
comment: TODO - check 2 FMA IDs
synonym: "epithelial tissue of prostate" EXACT [OBOL:automatic]
synonym: "epithelial tissue of prostate gland" EXACT [OBOL:automatic]
synonym: "epithelium of prostate" EXACT [OBOL:automatic]
synonym: "epithelium of prostate gland" EXACT [OBOL:automatic]
synonym: "epithelium of prostatic gland" EXACT [FMA:79643]
synonym: "prostate epithelial tissue" EXACT [OBOL:automatic]
synonym: "prostate gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "prostate gland epithelium" EXACT []
synonym: "prostatic epithelium" EXACT [FMA:66812]
synonym: "prostatic gland epithelium" EXACT []
xref: BTO:0002397
xref: FMA:66812
xref: FMA:79643
xref: MA:0001737
xref: ncithesaurus:Prostatic_Epithelium
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0002367
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002367 ! prostate gland
relationship: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0000429
name: enteric plexus
def: "A plexus of autonomic nerve fibers within the wall of the digestive tube, and made up of the submucosal, myenteric, and subserosal plexuses; it contains visceral afferent fibers, sympathetic postganglionic fibers, parasympathetic preganglionic and postganglionic fibers, and parasympathetic postganglionic cell bodies." [BTO:0002437]
comment: TODO - add subserosal plexus?
synonym: "enteric nerve plexus" EXACT [FMA:77597]
synonym: "plexus entericus" EXACT [BTO:0002437]
synonym: "plexus nervosus entericus" EXACT [FMA:77597, FMA:TA]
synonym: "sympathetic enteric nerve plexus" EXACT [FMA:77597]
xref: BTO:0002437
xref: FMA:77597
is_a: UBERON:0001816 ! autonomic nerve plexus
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002005 ! enteric nervous system
[Term]
id: UBERON:0000430
name: ventral intermediate nucleus of thalamus
def: "A nucleus medially located within the ventral nuclei of the thalamus." [BTO:0002469]
subset: vertebrate_core
synonym: "nucleus ventralis intermedius thalami" RELATED [BTO:0002469]
xref: BTO:0002469
xref: EV:0100208
xref: FMA:84347
xref: TAO:0000370
xref: ZFA:0000370
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001900 {source="BTO-definition", source="ZFA"} ! subthalamus
[Term]
id: UBERON:0000431
name: ventral medial complex of thalamus
synonym: "nuclei ventrales mediales thalami" RELATED [BTO:0002470]
synonym: "ventral medial complex of thalamus" EXACT [FMA:77795]
synonym: "ventral medial nuclei of thalamus" EXACT [FMA:77795]
xref: BTO:0002470
xref: FMA:77795
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0000432
name: endopeduncular nucleus
def: "A portion of the nucleus of ansa lenticularis located medial to the posterior limb of the internal capsule, along the course of the ansa lenticularis and the inferior thalamic peduncle or as a separate nucleus within the internal capsule adjacent to the medial GLOBUS PALLIDUS (NeuroNames, http://rprcsgi.rprc. washington.edu/neuronames/ (September 28, 1998)). In non-primates, the entopeduncular nucleus is analogous to both the medial globus pallidus and the entopeduncular nucleus of human." [MESH:A.08.186.211.730.385.800.240]
comment: The term entopeduncular nucleus in human neuroanatomy refers to a portion of the nucleus of the ansa lenticularis described variously as located medial to the posterior limb of the internal capsule ( Riley-1943 ), along the course of the ansa lenticularis and the inferior thalamic peduncle ( Crosby-1962 ), or as a separate nucleus within the internal capsule adjacent to the medial segment of the globus pallidus ( Nomina-1983 ).[NN]
synonym: "entopeduncular nucleus" RELATED []
synonym: "nucleus endopeduncularis" RELATED [BTO:0002475]
synonym: "nucleus entopeduncularis" RELATED []
xref: BTO:0002475
xref: FMA:77691
xref: MESH:A.08.186.211.730.385.800.240
xref: SCTID:82705008
is_a: UBERON:0007692 ! nucleus of thalamus
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0009641 {source="NN"} ! ansa lenticularis
[Term]
id: UBERON:0000433
name: posterior paraventricular nucleus of thalamus
synonym: "dorsal paraventricular nucleus of thalamus" EXACT [FMA:76961]
synonym: "nucleus paraventricularis posterior thalami" RELATED [BTO:0002477]
xref: BTO:0002477
xref: FMA:76961
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0000434
name: anterior paraventricular nucleus of thalamus
synonym: "nucleus paraventricularis anterior thalami" RELATED [BTO:0002478]
synonym: "ventral paraventricular nucleus of thalamus" EXACT [FMA:76962]
xref: BTO:0002478
xref: FMA:76962
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0000435
name: lateral tuberal nucleus
def: "Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area." [BTO:0002481]
synonym: "Lateral tuberal hypothalamic nuclei" EXACT [FMA:62336]
synonym: "lateral tuberal nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1206]
synonym: "Lateral tuberal nuclei" EXACT [FMA:62336]
synonym: "nuclei tuberales laterales" RELATED [BTO:0002481]
xref: ABA:TU
xref: BM:TU
xref: BTO:0002481
xref: EV:0100240
xref: FMA:62336
xref: NIF_GrossAnatomy:birnlex_1206
is_a: UBERON:0002785 ! regional part of lateral hypothalamic region
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0006568 ! hypothalamic nucleus
relationship: part_of UBERON:0002430 ! lateral hypothalamic area
[Term]
id: UBERON:0000437
name: arachnoid barrier layer
def: "The arachnoid barrier layer is a part of the arachnoid meningeal layer. It is formed by tight junctions between the endothelial cells of cerebral capillaries in the arachnoid mater." [BTO:0002498]
xref: BTO:0002498
xref: FMA:231559
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 {source="FMA"} ! organ component layer
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002362 {source="FMA"} ! arachnoid mater
[Term]
id: UBERON:0000438
name: set of arachnoid trabecula
synonym: "Arachnoid trabeculae set" EXACT [FMA:77761]
synonym: "trabeculae arachnoideae" EXACT [FMA:77761, FMA:TA]
xref: BTO:0002500
is_obsolete: true
[Term]
id: UBERON:0000439
name: arachnoid trabecula
def: "a small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue." [GO:0060343]
synonym: "trabecula arachnoideum" RELATED []
xref: BTO:0002500
xref: FMA:83979
is_a: UBERON:0000440 ! trabecula
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002362 ! arachnoid mater
[Term]
id: UBERON:0000440
name: trabecula
def: "A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like.. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]." [GO:0060343, Wikipedia:Trabecula]
subset: grouping_class
xref: BTO:0002501
xref: FMA:85273
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000442
name: right testicular vein
def: "A vein that drains the left pampiniform plexus and empties into the left renal vein." [Dorlands_Medical_Dictionary:MerckSource]
synonym: "vena testicularis (adrenalis) dextra" EXACT [FMA:14341]
synonym: "vena testicularis dextra" RELATED [BTO:0002679]
synonym: "vena testicularis sinistra" RELATED [BTO:0002680]
xref: BTO:0002679
xref: FMA:14341
xref: MA:0002220
xref: SCTID:53500001
is_a: UBERON:0001144 ! testicular vein
[Term]
id: UBERON:0000443
name: left testicular vein
def: "A vein that drains the right pampiniform plexus and empties into the inferior vena cava." [Dorlands_Medical_Dictionary:MerckSource]
synonym: "vena testicularis dextra" RELATED [BTO:0002679]
synonym: "vena testicularis sinistra" RELATED [BTO:0002680]
xref: BTO:0002680
xref: FMA:14345
xref: MA:0002219
xref: SCTID:90988008
is_a: UBERON:0001144 ! testicular vein
relationship: in_left_side_of UBERON:0000468
intersection_of: UBERON:0001144 ! testicular vein
intersection_of: in_left_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0000444
name: lymphoid follicle
def: "." [https://github.com/cmungall/uberon/issues/6, https://github.com/cmungall/uberon/issues/7]
comment: introducing part_of to 'cortex of lymph node' as in issue 7 introduces equivalencies; the part_of has instead been added to 'lymph node follicle'
synonym: "folliculus lymphaticus" RELATED [BTO:0002684]
synonym: "lymphatic follicle" RELATED [BTO:0002684]
synonym: "lymphatic nodule" RELATED [BTO:0002684]
synonym: "lymphoid nodule" EXACT [FMA:55222]
synonym: "nodular lymphoid tissue" EXACT [FMA:55222]
synonym: "nodulus lymphaticus" RELATED [BTO:0002684]
synonym: "nodulus lymphoideus" RELATED [BTO:0002684]
xref: BTO:0002684
xref: FMA:55222
xref: ncithesaurus:Lymphoid_Follicle
xref: SCTID:64626006
is_a: UBERON:0001744 {source="FMA"} ! lymphoid tissue
[Term]
id: UBERON:0000445
name: habenular trigone
def: "The habenular trigone is a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the taenia thalami. It contains a group of nerve cells termed the ganglion habenulC&. Fibers enter it from the stalk of the pineal body, and others, forming what is termed the habenular commissure, pass across the middle line to the corresponding ganglion of the opposite side. Most of its fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion." [Wikipedia:Habenular_trigone]
comment: superclass in BTO is thalamic nucleus, not present in most ontologies
synonym: "trigone of habenulae" RELATED [BTO:0002700]
synonym: "trigonum habenulae" RELATED [BTO:0002700]
synonym: "trigonum habenulae" RELATED LATIN [Wikipedia:Habenular_trigone]
xref: BTO:0002700
xref: FMA:74868
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001904 ! habenula
[Term]
id: UBERON:0000446
name: septum of telencephalon
def: "Subdivision of the telencephalon on the midline between the lateral ventricles which contains the septum pellucidum and the septal nuclei[FMA]." [FMA:61842]
synonym: "area septalis" EXACT [FMA:61842, FMA:TA]
synonym: "septal area" EXACT [FMA:61842]
synonym: "septum" BROAD [NIF_GrossAnatomy:birnlex_963]
synonym: "septum (NN)" EXACT [FMA:61842]
synonym: "telencephalon septum" EXACT [FMA:61842]
xref: BTO:0002705
xref: FMA:61842
xref: MA:0000924
xref: MESH:A.08.186.211.577.750
xref: NIF_GrossAnatomy:birnlex_963
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0000449
name: decidual cell
def: "Before the fertilized ovum reaches the uterus, the mucous membrane of the body of the uterus undergoes important changes and is then known as the decidua. The thickness and vascularity of the mucous membrane are greatly increased; its glands are elongated and open on its free surface by funnel-shaped orifices, while their deeper portions are tortuous and dilated into irregular spaces. The interglandular tissue is also increased in quantity, and is crowded with large round, oval, or polygonal cells, termed decidual cells. Their enlargement is due to glycogen and lipid accumulation in the cytoplasm allowing these cells to provide a rich source of nutrition for the developing embryo. [WP,unvetted]." [Wikipedia:Decidual_cells]
comment: request from CL
xref: BTO:0002770
xref: FMA:86480
xref: ncithesaurus:Decidual_Cell
is_a: UBERON:0000478 ! extraembryonic structure
[Term]
id: UBERON:0000450
name: corpus albicans
def: "White fibrous tissue that replaces the regressing corpus luteum in the human ovary in the latter half of pregnancy, or soon after ovulation when pregnancy does not supervene." [BTO:0002784]
synonym: "corpus albicans of ovary" EXACT [FMA:18620]
synonym: "corpus fibrosum" RELATED [BTO:0002784]
synonym: "corpus mamillare" RELATED [BTO:0002784]
synonym: "mamillary body" RELATED INCONSISTENT [BTO:0002784]
synonym: "mammillary body" RELATED INCONSISTENT [BTO:0002784]
xref: BTO:0002784
xref: EMAPA:29888
xref: FMA:18620
xref: SCTID:258043001
is_a: UBERON:0003982 {source="BTO"} ! mature ovarian follicle
[Term]
id: UBERON:0000451
name: prefrontal cortex
def: "The prefrontal cortex (PFC) is the anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas. This brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals. The most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes). Many authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. [WP,unvetted]." [Wikipedia:Prefrontal_cortex]
comment: TODO - check MA
synonym: "frontal association cortex" RELATED ATTRIBUTION_REQUIRED [MA:0000906]
synonym: "prefrontal association complex" RELATED [BTO:0002807]
synonym: "prefrontal association cortex" EXACT [FMA:224850]
xref: BTO:0002807
xref: EFO:0001384
xref: FMA:224850
xref: GAID:676
xref: http://upload.wikimedia.org/wikipedia/commons/5/59/Gray726-Brodman-prefrontal.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Gray726-Brodman-prefrontal.svg/200px-Gray726-Brodman-prefrontal.svg.png
xref: MA:0000906
xref: MESH:A.08.186.211.730.885.213.270.700
xref: NIF_GrossAnatomy:nlx_anat_090801
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0001870 ! frontal cortex
[Term]
id: UBERON:0000453
name: decidua basalis
def: "Region between the blastocyst and the myometrium." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm]
comment: development notes: As the embryo enlarges, the decidua capsularis becomes stretched and smooth. Eventually the decidua capsularis merges with the decidua parietalis, obliterating the uterine cavity
synonym: "decidua serotina" RELATED [BTO:0002819]
xref: BTO:0002819
xref: EFO:0001918
xref: FMA:86477
xref: MA:0002905
xref: ncithesaurus:Decidua_Basalis
xref: SCTID:362841006
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0002450 ! decidua
[Term]
id: UBERON:0000454
name: cerebral subcortex
synonym: "Cerebral medulla" EXACT [FMA:242188]
synonym: "subcortex" RELATED [BTO:0002858]
xref: BTO:0002858
xref: FMA:242188
xref: ncithesaurus:Cerebral_Subcortex
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000456
name: bodily secretion
alt_id: UBERON:0006540
def: "Body substance in a liquid or semisolid state produced by an exocrine gland. Example: saliva, sebum, blood, plasma, semen, urine." [FMA:9675]
comment: AO notes: BTO has two distunct classes, with exocrine glandular secretion a subtype of secretion - however, all examples in BTO directly under secretion appear to be exocrine gland secretions
synonym: "exocrine gland fluid" RELATED []
synonym: "exocrine gland fluid or secretion" RELATED []
synonym: "exocrine gland fluid/secretion" EXACT [MA:0002504]
synonym: "exocrine gland secretion" RELATED []
synonym: "external secretion" RELATED [BTO:0002977]
synonym: "secreted substance" EXACT []
synonym: "secretion" EXACT [FMA:9675]
xref: BTO:0002977
xref: BTO:0002979
xref: FMA:9675
xref: galen:Secretion
xref: MA:0002504
xref: MESH:A.12.200
xref: ncithesaurus:Exocrine_Gland_Fluid_or_Secretion
is_a: UBERON:0000463 ! portion of organism substance
relationship: secreted_by UBERON:0002365
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: secreted_by UBERON:0002365 ! exocrine gland
relationship: secreted_by UBERON:0002365 ! exocrine gland
[Term]
id: UBERON:0000457
name: cavernous artery
synonym: "Cavernous branch of cavernous part of internal carotid artery" EXACT [FMA:70527]
synonym: "ramus sinus cavernosi (pars cavernosa) (arteria carotis interna)" EXACT [FMA:70527, FMA:TA]
xref: BTO:0002996
xref: FMA:70527
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0000458
name: endocervix
xref: BTO:0003002
xref: FMA:86485
xref: ncithesaurus:Endocervix
xref: SCTID:264460007
is_a: UBERON:0000063 ! organ segment
[Term]
id: UBERON:0000459
name: uterine wall
def: "An anatomical wall that is part of a uterus [Obol]." [OBOL:automatic]
synonym: "anatomical wall of uterus" EXACT [OBOL:automatic]
synonym: "uterus anatomical wall" EXACT [OBOL:automatic]
synonym: "uterus wall" EXACT [OBOL:automatic]
synonym: "wall of uterus" EXACT [OBOL:automatic]
xref: BTO:0003083
xref: FMA:17560
xref: SCTID:245485002
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000995
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000995 ! uterus
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0000460
name: major vestibular gland
def: "Gland found in pairs located slightly below and to the left and right of the opening of the vagina in women. Bartholin's glands are homologous to bulbourethral glands in males. However, while Bartholin's glands are located in the superficial perineal pouch, bulbourethral glands are located in the deep perineal pouch. They secrete mucus to provide vaginal lubrication." [Wikipedia:Bartholin's_glands]
subset: organ_slim
synonym: "Bartholin's gland" EXACT [FMA:9598]
synonym: "Duverney's gland" RELATED [FMA:9598]
synonym: "glandula vestibularis major" RELATED [BTO:0003115]
synonym: "greater vestibular gland" RELATED [MA:0002936]
synonym: "greater vestibular glands of bartholin" RELATED [Wikipedia:Bartholin%27s_gland]
synonym: "Tiedemann's gland" EXACT [FMA:9598]
synonym: "Vulvovaginal gland" EXACT [FMA:9598]
xref: BTO:0003115
xref: FMA:9598
xref: GAID:384
xref: MA:0002936
xref: MESH:A.05.360.319.887.220
xref: SCTID:362244005
property_value: "homologous_to" UBERON:0002366
is_a: UBERON:0003297 ! gland of integumental system
disjoint_from: UBERON:0010048 ! Duvernoy's gland
relationship: part_of UBERON:0002416 {source="FMA"} ! integumental system
relationship: part_of UBERON:0002416 ! integumental system
[Term]
id: UBERON:0000461
name: minor vestibular gland
def: "Small mucous glands opening upon the vestibular mucous membrane between the urethral and the vaginal orifice." [BTO:0003116]
comment: Editors note: compare with Skene's gland. Structure notes: check and part_of relationships to mammalian vulva / urethra
subset: organ_slim
synonym: "female urethral gland" BROAD [EMAPA:29653]
synonym: "glandula vestibular minor" EXACT [FMA:20019]
synonym: "glandula vestibulares minor" RELATED [BTO:0003116]
synonym: "Guerin's gland" RELATED [BTO:0003116]
synonym: "lesser vestibular gland" EXACT [FMA:20019]
synonym: "paraurethral gland" RELATED [BTO:0003116]
synonym: "periurethral gland" RELATED [BTO:0003116]
synonym: "Schueller's gland" RELATED [BTO:0003116]
synonym: "skene's gland" RELATED [BTO:0003116]
synonym: "urethral gland of female urethra" RELATED [BTO:0003116]
xref: BTO:0003116
xref: FMA:20019
xref: ncithesaurus:Skene_s_Gland
xref: SCTID:279869001
is_a: UBERON:0010145 {source="ncithesaurus"} ! paraurethral gland
is_a: UBERON:0010187 ! female urethral gland
relationship: part_of UBERON:0000474 {source="FMA"} ! female reproductive system
relationship: part_of UBERON:0001334 ! female urethra
[Term]
id: UBERON:0000462
name: villus
is_obsolete: true
[Term]
id: UBERON:0000463
name: portion of organism substance
def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [CARO:MAH]
subset: upper_level
synonym: "body fluid or substance" EXACT [MA:0002450]
synonym: "body substance" EXACT [FMA:9669]
synonym: "organism substance" EXACT []
synonym: "portion of body substance" EXACT [FMA:9669]
xref: AAO:0010839
xref: AEO:0000004
xref: BILA:0000004
xref: CARO:0000004
xref: EHDAA2:0003004
xref: FBbt:00007019
xref: FMA:9669
xref: galen:BodySubstance
xref: HAO:0000004
xref: MA:0002450
xref: ncithesaurus:Body_Fluid_or_Substance
xref: SPD:0000008
xref: TAO:0001487
xref: TGMA:0001824
xref: VHOG:0001726
xref: XAO:0004001
xref: ZFA:0001487
is_a: UBERON:0000465 ! material anatomical entity
relationship: part_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0000464
name: anatomical space
def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [CARO:MAH]
subset: upper_level
xref: AAO:0010110
xref: AEO:0000005
xref: BILA:0000005
xref: CARO:0000005
xref: EHDAA2:0003005
xref: FBbt:00007017
xref: FMA:5897
xref: HAO:0000005
xref: TAO:0001668
xref: TGMA:0001825
xref: VHOG:0001728
xref: XAO:0003190
xref: ZFA:0001643
is_a: UBERON:0000466 ! immaterial anatomical entity
disjoint_from: UBERON:0006800 ! anatomical line
relationship: surrounded_by UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000465
name: material anatomical entity
def: "Anatomical entity that has mass." [CARO:MAH]
subset: upper_level
xref: AAO:0010264
xref: AEO:0000006
xref: BILA:0000006
xref: CARO:0000006
xref: EHDAA2:0003006
xref: FBbt:00007016
xref: FMA:67165
xref: HAO:0000006
xref: TAO:0001836
xref: TGMA:0001826
xref: VHOG:0001721
is_a: UBERON:0001062 ! anatomical entity
[Term]
id: UBERON:0000466
name: immaterial anatomical entity
def: "Anatomical entity that has no mass." [CARO:MAH]
subset: disjointness_axiom_removed
subset: upper_level
synonym: "immaterial physical anatomical entity" EXACT [FMA:67112]
xref: AAO:0010265
xref: AEO:0000007
xref: BILA:0000007
xref: CARO:0000007
xref: EHDAA2:0003007
xref: FBbt:00007015
xref: FMA:67112
xref: HAO:0000007
xref: TAO:0001835
xref: TGMA:0001827
xref: VHOG:0001727
is_a: UBERON:0001062 ! anatomical entity
[Term]
id: UBERON:0000467
name: anatomical system
def: "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity[CARO]. A group of organs that work together to perform a certain task [Wikipedia]." [CARO:0000011, CARO:MAH, Wikipedia:Organ_system]
subset: uberon_slim
subset: upper_level
synonym: "body system" EXACT [NIF_GrossAnatomy:birnlex_14]
synonym: "organ system" EXACT []
synonym: "system" BROAD [GO:0048731]
xref: AAO:0000007
xref: AEO:0000011
xref: BILA:0000011
xref: CARO:0000011
xref: EHDAA2:0001330
xref: EHDAA2:0003011
xref: EHDAA:392
xref: EMAPA:16103
xref: EV:0100000
xref: FBbt:00004856
xref: FMA:7149
xref: galen:AnatomicalSystem
xref: HAO:0000011
xref: MA:0000003
xref: ncithesaurus:Organ_System
xref: NIF_GrossAnatomy:birnlex_14
xref: OpenCyc:Mx4rCWM0QCtDEdyAAADggVbxzQ
xref: SCTID:278195005
xref: TAO:0001439
xref: TGMA:0001831
xref: VHOG:0001725
xref: WBbt:0005746
xref: XAO:0003002
xref: ZFA:0001439
property_value: UBPROP:0000001 "Anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[TAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[AAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity.[CARO]" xsd:string
is_a: UBERON:0000480 ! anatomical group
relationship: part_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0000468
name: multi-cellular organism
def: "Anatomical structure that is an individual member of a species and consists of more than one cell." [CARO:0000012, CARO:MAH, Wikipedia:Multi-cellular_organism]
comment: TODO - split body and mc organism? body continues after death stage
subset: uberon_slim
subset: upper_level
synonym: "adult mouse" EXACT [MA:0002405]
synonym: "body" EXACT []
synonym: "Koerper" RELATED [BTO:0001489]
synonym: "organism" EXACT []
synonym: "TS28" RELATED [MA:0002405]
synonym: "whole body" EXACT [BTO:0001489]
synonym: "whole organism" EXACT []
xref: AAO:0010026
xref: AEO:0000103
xref: AEO:0000191
xref: BILA:0000012
xref: BTO:0001489
xref: CARO:0000012
xref: EFO:0002906
xref: EHDAA2:0003103
xref: EHDAA2:0003191
xref: EHDAA:1
xref: EHDAA:9178
xref: EMAPA:25765
xref: EV:0100016
xref: FBbt:00000001
xref: FMA:256135
xref: galen:Organism
xref: HAO:0000012
xref: MA:0002405
xref: ncithesaurus:Whole_Organism
xref: NIF_GrossAnatomy:birnlex_18
xref: SCTID:243928005
xref: TADS:0000001
xref: TAO:0001094
xref: TGMA:0001832
xref: VHOG:0000671
xref: WBbt:0007833
xref: XAO:0003004
xref: ZFA:0001094
property_value: UBPROP:0000001 "Anatomical structure that is an individual member of a species.[TAO]" xsd:string
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000470
name: cell part
def: "Anatomical structure that is a direct part of the cell." [CARO:MAH]
comment: todo - move metadata to GO and obsolete this class. Note the inconsistency between the usage of the label 'cell component' in GO and CARO
subset: upper_level
synonym: "cell component" RELATED [CARO:0000014]
xref: AAO:0010271
xref: BILA:0000014
xref: CARO:0000014
xref: FBbt:00007012
xref: FMA:86454
xref: GO:0044464
xref: HAO:0000014
xref: ncithesaurus:Cell_Part
xref: NIF_Subcellular:sao-1337158144
xref: OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA
xref: TGMA:0001834
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000471
name: compound organ component
def: "Multi-tissue structure that is part of a compound organ." [CARO:0000019, CARO:MAH]
subset: upper_level
xref: AAO:0010017
xref: AEO:0000019
xref: BILA:0000019
xref: CARO:0000019
xref: EHDAA2:0003019
xref: HAO:0000019
xref: TAO:0001489
xref: TGMA:0001835
xref: XAO:0003039
xref: ZFA:0001489
is_a: UBERON:0000481 ! multi-tissue structure
[Term]
id: UBERON:0000472
name: simple organ
def: "Multi-tissue structure that is not part of a compound organ." [CARO:0000021, CARO:MAH]
subset: upper_level
xref: AAO:0010051
xref: AEO:0000190
xref: BILA:0000021
xref: CARO:0000021
xref: EHDAA2:0003190
xref: HAO:0000021
xref: TAO:0001492
xref: TGMA:0001836
xref: XAO:0003038
xref: ZFA:0001492
is_a: UBERON:0000481 ! multi-tissue structure
[Term]
id: UBERON:0000473
name: testis
alt_id: UBERON:0002117
def: "gonad of a male animal, produces and releases sperm." [Wikipedia:Testis]
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "genitalia of male organism gonad" EXACT [OBOL:automatic]
synonym: "genitalia of male organism gonada" EXACT [OBOL:automatic]
synonym: "gonad of genitalia of male organism" EXACT [OBOL:automatic]
synonym: "gonad of male genitalia" EXACT [OBOL:automatic]
synonym: "gonad of male genitals" EXACT [OBOL:automatic]
synonym: "gonad of male organism genitalia" EXACT [OBOL:automatic]
synonym: "gonad of male organism reproductive system" EXACT [OBOL:automatic]
synonym: "gonad of male reproductive system" EXACT [OBOL:automatic]
synonym: "gonad of reproductive system of male organism" EXACT [OBOL:automatic]
synonym: "gonada of genitalia of male organism" EXACT [OBOL:automatic]
synonym: "gonada of male genitalia" EXACT [OBOL:automatic]
synonym: "gonada of male genitals" EXACT [OBOL:automatic]
synonym: "gonada of male organism genitalia" EXACT [OBOL:automatic]
synonym: "gonada of male organism reproductive system" EXACT [OBOL:automatic]
synonym: "gonada of male reproductive system" EXACT [OBOL:automatic]
synonym: "gonada of reproductive system of male organism" EXACT [OBOL:automatic]
synonym: "male genitalia gonad" EXACT [OBOL:automatic]
synonym: "male genitalia gonada" EXACT [OBOL:automatic]
synonym: "male genitals gonad" EXACT [OBOL:automatic]
synonym: "male gonad" EXACT [OBOL:automatic]
synonym: "male organism genitalia gonad" EXACT [OBOL:automatic]
synonym: "male organism genitalia gonada" EXACT [OBOL:automatic]
synonym: "male organism reproductive system gonad" EXACT [OBOL:automatic]
synonym: "male organism reproductive system gonada" EXACT [OBOL:automatic]
synonym: "male reproductive system gonad" EXACT [OBOL:automatic]
synonym: "male reproductive system gonada" EXACT [OBOL:automatic]
synonym: "orchis" RELATED [BTO:0001363]
synonym: "reproductive system of male organism gonad" EXACT [OBOL:automatic]
synonym: "reproductive system of male organism gonada" EXACT [OBOL:automatic]
synonym: "testes" RELATED PLURAL []
synonym: "testicle" EXACT [FMA:7210]
synonym: "testiculus" RELATED [BTO:0001363]
xref: AAO:0000606
xref: BILA:0000124
xref: BTO:0001363
xref: EFO:0000984
xref: EHDAA2:0002007
xref: EHDAA:8146
xref: EMAPA:17972
xref: EV:0100102
xref: FBbt:00004928
xref: FMA:7210
xref: GAID:396
xref: galen:Testis
xref: HAO:0001007
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Gray1144.png/200px-Gray1144.png
xref: MA:0000411
xref: MAT:0000132
xref: MESH:A.05.360.444.849
xref: MIAA:0000132
xref: ncithesaurus:Testis
xref: OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA
xref: SCTID:181431007
xref: TAO:0000598
xref: VHOG:0000252
xref: WBbt:0006794
xref: XAO:0000157
xref: ZFA:0000598
property_value: UBPROP:0000001 "Either of paired male reproductive organs which are involved in the production of sperm and male sex hormones.[AAO]" xsd:string
property_value: UBPROP:0000001 "Male reproductive organ.[TAO]" xsd:string
is_a: UBERON:0000991 ! gonad
is_a: UBERON:0003135 ! male reproductive organ
relationship: part_of UBERON:0000079
intersection_of: UBERON:0000991 ! gonad
intersection_of: part_of UBERON:0000079 ! male reproductive system
disjoint_from: UBERON:0000992 ! female gonad
disjoint_from: UBERON:0009117 ! indifferent gonad
relationship: develops_from UBERON:0009117 ! indifferent gonad
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0000474
name: female reproductive system
def: "The organs of the female reproductive system." [Wikipedia:Female_genitalia]
subset: uberon_slim
synonym: "female genital system" RELATED []
synonym: "female genitalia" RELATED []
synonym: "female organism genitalia" EXACT [OBOL:automatic]
synonym: "female organism reproductive system" EXACT [OBOL:automatic]
synonym: "female reproductive tract" RELATED [MA:0000381]
synonym: "genitalia of female organism" EXACT [OBOL:automatic]
synonym: "gynaecological tissue" RELATED [BTO:0000083]
synonym: "reproductive system of female organism" EXACT [OBOL:automatic]
synonym: "systema genitale femininum" RELATED [BTO:0000083]
xref: BTO:0000083
xref: EFO:0000969
xref: EHDAA2:0000506
xref: EHDAA:8116
xref: EMAPA:17959
xref: EV:0100110
xref: FBbt:00004864
xref: FMA:45663
xref: GAID:364
xref: HAO:0000324
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Scheme_female_reproductive_system-en.svg/200px-Scheme_female_reproductive_system-en.svg.png
xref: MA:0000381
xref: MESH:A.05.360.319
xref: MIAA:0000028
xref: ncithesaurus:Female_Reproductive_System
xref: OpenCyc:Mx4rvVipTZwpEbGdrcN5Y29ycA
xref: SCTID:361386004
xref: TGMA:0000635
xref: VHOG:0000726
xref: WBbt:0006748
xref: XAO:0000156
is_a: UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0003100
intersection_of: UBERON:0000990 ! reproductive system
intersection_of: part_of UBERON:0003100 ! female organism
relationship: part_of UBERON:0003100 ! female organism
[Term]
id: UBERON:0000475
name: organism subdivision
def: "Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." [CARO:0000032, CARO:MAH, Wikipedia:Body_part]
comment: Editor note: revise after CARO2. todo - check the inclusion of FMA 'cardinal body part here', and check child terms for consistency
subset: uberon_slim
subset: upper_level
synonym: "body part" RELATED []
synonym: "body region" RELATED [FMA:7153]
synonym: "cardinal body part" RELATED [FMA:7153]
xref: AAO:0010053
xref: AEO:0000032
xref: BILA:0000032
xref: CARO:0000032
xref: EFO:0000808
xref: EHDAA2:0003032
xref: FBbt:00007009
xref: FMA:7153
xref: galen:BodyPart
xref: HAO:0000032
xref: MA:0002433
xref: MAT:0000293
xref: MESH:A.01
xref: MIAA:0000293
xref: ncithesaurus:Body_Part
xref: OpenCyc:Mx4rvViAHJwpEbGdrcN5Y29ycA
xref: TAO:0001308
xref: TGMA:0001840
xref: VHOG:0001758
xref: XAO:0003013
xref: ZFA:0001308
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0000476
name: acellular anatomical structure
def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [CARO:MAH]
subset: vertebrate_core
xref: AAO:0010268
xref: AEO:0000040
xref: BILA:0000040
xref: CARO:0000040
xref: EHDAA2:0003040
xref: FBbt:00007013
xref: FMA:63863
xref: HAO:0000040
xref: TAO:0000382
xref: TGMA:0001841
xref: XAO:0003162
xref: ZFA:0000382
property_value: UBPROP:0000001 "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or tissue.[AAO]" xsd:string
is_a: UBERON:0000061 ! anatomical structure
disjoint_from: UBERON:0000480 ! anatomical group
[Term]
id: UBERON:0000477
name: anatomical cluster
def: "Anatomical group that has its parts adjacent to one another." [CARO:MAH]
subset: disjointness_axiom_removed
subset: upper_level
xref: AAO:0010009
xref: AEO:0000041
xref: BILA:0000041
xref: CARO:0000041
xref: EHDAA2:0003041
xref: FBbt:00007277
xref: FMA:49443
xref: HAO:0000041
xref: TADS:0000605
xref: TAO:0001478
xref: TGMA:0001842
xref: VHOG:0001737
xref: XAO:0003160
xref: ZFA:0001478
is_a: UBERON:0000480 ! anatomical group
[Term]
id: UBERON:0000478
name: extraembryonic structure
def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [CARO:MAH]
comment: see also conceptus extraembryonic component in EHDAA2
subset: uberon_slim
subset: vertebrate_core
synonym: "extra-embryonic structure" EXACT []
synonym: "extraembryonic component" RELATED []
synonym: "extraembryonic tissue" RELATED []
xref: AAO:0010020
xref: AEO:0000042
xref: BILA:0000042
xref: CARO:0000042
xref: EHDAA2:0003042
xref: EHDAA:46
xref: EMAPA:16042
xref: FBbt:00005835
xref: FMA:85537
xref: HAO:0000042
xref: ncithesaurus:Extraembryonic_Structure
xref: SCTID:314908006
xref: TAO:0000020
xref: TGMA:0001843
xref: VHOG:0000292
xref: XAO:0004005
xref: ZFA:0000020
is_a: UBERON:0000061 ! anatomical structure
relationship: adjacent_to UBERON:0002050
relationship: existence_starts_and_ends_during UBERON:0000068
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: adjacent_to UBERON:0002050 ! embryonic structure
intersection_of: existence_starts_and_ends_during UBERON:0000068 ! embryo stage
disjoint_from: UBERON:0002050 ! embryonic structure
relationship: adjacent_to UBERON:0002050 ! embryonic structure
relationship: existence_starts_and_ends_during UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000479
name: tissue
def: "Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships." [CARO:0000043, CARO:MAH, FMA:9637]
comment: This class was sourced from CARO, which was initially sourced from FMA. Nomenclature changes have been made. Note also AEO introduces a class AEO:0000013 'single-cell tissue'
subset: upper_level
synonym: "portion of tissue" EXACT [CARO:0000043]
synonym: "simple tissue" EXACT [AEO:0000043]
synonym: "tissue portion" EXACT []
xref: AAO:0000607
xref: AAO:0010054
xref: AEO:0000043
xref: BILA:0000043
xref: CARO:0000043
xref: EHDAA2:0003043
xref: FBbt:00007003
xref: FMA:9637
xref: galen:Tissue
xref: HAO:0000043
xref: MA:0003002
xref: MESH:A.10
xref: ncithesaurus:Tissue
xref: NIF_GrossAnatomy:birnlex_19
xref: TAO:0001477
xref: TGMA:0001844
xref: VHOG:0001757
xref: WBbt:0005729
xref: XAO:0003040
xref: ZFA:0001477
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000480
name: anatomical group
def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [CARO:0000054, CARO:MAH]
subset: upper_level
xref: AAO:0010008
xref: AEO:0000054
xref: BILA:0000054
xref: CARO:0000054
xref: EHDAA2:0003054
xref: HAO:0000054
xref: TAO:0001512
xref: TGMA:0001846
xref: VHOG:0001724
xref: XAO:0003001
xref: ZFA:0001512
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000481
name: multi-tissue structure
def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [CARO:0000055, CARO:MAH]
subset: upper_level
xref: AAO:0010048
xref: AEO:0000055
xref: BILA:0000055
xref: CARO:0000055
xref: EHDAA2:0003055
xref: FBbt:00007010
xref: HAO:0000055
xref: TAO:0001488
xref: TGMA:0001847
xref: VHOG:0001762
xref: XAO:0003037
xref: ZFA:0001488
is_a: UBERON:0000061 ! anatomical structure
relationship: has_part UBERON:0000479 ! tissue
[Term]
id: UBERON:0000482
name: basal lamina
def: "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." [CARO:MAH, Wikipedia:Basal_lamina]
comment: TODO - use GO.
subset: uberon_slim
subset: vertebrate_core
synonym: "basal lamina of connective tissue" EXACT []
synonym: "lamina basalis" RELATED LATIN [Wikipedia:Basal_lamina]
xref: AAO:0010269
xref: AEO:0000065
xref: BILA:0000065
xref: CARO:0000065
xref: EHDAA2:0003065
xref: FMA:62918
xref: GO:0005605
xref: HAO:0000065
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Basal_lamina.jpg
xref: MESH:A.10.272.220
xref: ncithesaurus:Basal_Lamina
xref: NIF_Subcellular:sao1397492660
xref: TAO:0001485
xref: TGMA:0001850
xref: VHOG:0001592
xref: WBbt:0005756
xref: XAO:0003163
xref: ZFA:0001485
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: adjacent_to UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000483
name: epithelium
def: "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]." [CARO:MAH, Wikipedia:Epithelium]
subset: uberon_slim
subset: vertebrate_core
synonym: "epithelial tissue" EXACT []
synonym: "portion of epithelium" EXACT [FMA:9639]
xref: AAO:0000144
xref: AAO:0010055
xref: AEO:0000066
xref: BILA:0000066
xref: BTO:0000416
xref: CARO:0000066
xref: EHDAA2:0003066
xref: FBbt:00007005
xref: FMA:9639
xref: GAID:402
xref: HAO:0000066
xref: http://upload.wikimedia.org/wikipedia/commons/c/c3/Tkanka_nablonkowa.png
xref: MESH:A.10.272
xref: ncithesaurus:Epithelium
xref: SCTID:31610004
xref: TAO:0001486
xref: VHOG:0000387
xref: XAO:0003045
xref: ZFA:0001486
property_value: UBPROP:0000001 "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.[AAO]" xsd:string
property_value: UBPROP:0000001 "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.[CARO]" xsd:string
property_value: UBPROP:0000001 "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.[TAO]" xsd:string
is_a: UBERON:0000119 ! cell layer
[Term]
id: UBERON:0000484
name: simple cuboidal epithelium
def: "Unilaminar epithelium that consists of a single layer of cuboidal cells." [CARO:MAH, Wikipedia:Simple_cuboidal_epithelium]
subset: uberon_slim
subset: vertebrate_core
synonym: "epithelium simplex cuboideum" EXACT []
xref: AAO:0010064
xref: AEO:0000067
xref: BILA:0000067
xref: CARO:0000067
xref: EHDAA2:0003067
xref: FMA:45566
xref: HAO:0000067
xref: http://upload.wikimedia.org/wikipedia/commons/d/d0/Gray1133.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Gray1133.png/200px-Gray1133.png
xref: ncithesaurus:Simple_Cuboidal_Epithelium
xref: TAO:0001497
xref: XAO:0004009
xref: ZFA:0001497
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0010077 ! cuboidal epithelium
[Term]
id: UBERON:0000485
name: simple columnar epithelium
def: "Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium.[FMA]" [CARO:MAH, FMA:FMA, Wikipedia:Simple_columnar_epithelium]
subset: uberon_slim
subset: vertebrate_core
synonym: "columnar epithelium" EXACT [EHDAA2:0003068]
synonym: "columnar epithlium" EXACT [AEO:0000068]
synonym: "epithelium simplex columnare" EXACT []
synonym: "simple columnar epithelium" EXACT []
xref: AAO:0010063
xref: AEO:0000068
xref: BILA:0000068
xref: CARO:0000068
xref: EHDAA2:0003068
xref: FBbt:00007027
xref: FMA:45567
xref: HAO:0000068
xref: http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray1059.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray1059.png/200px-Gray1059.png
xref: ncithesaurus:Simple_Columnar_Epithelium
xref: SCTID:32210007
xref: TAO:0001496
xref: XAO:0004008
xref: ZFA:0001496
property_value: UBPROP:0000001 "Unilaminar epithelium that consists of a single layer of columnar cells.[AAO]" xsd:string
property_value: UBPROP:0000001 "Unilaminar epithelium that consists of a single layer of columnar cells.[CARO]" xsd:string
property_value: UBPROP:0000001 "Unilaminar epithelium that consists of a single layer of columnar cells.[TAO]" xsd:string
is_a: UBERON:0000490 ! unilaminar epithelium
[Term]
id: UBERON:0000486
name: multilaminar epithelium
def: "Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium.[FMA]" [CARO:MAH, FMA:FMA, Wikipedia:Stratified_epithelium]
subset: uberon_slim
subset: vertebrate_core
synonym: "laminated epithelium" RELATED [BTO:0002074]
synonym: "stratified epithelium" EXACT []
xref: AAO:0010059
xref: AEO:0000069
xref: BILA:0000069
xref: BTO:0002074
xref: CARO:0000069
xref: EHDAA2:0003069
xref: FMA:45562
xref: HAO:0000069
xref: ncithesaurus:Stratified_Epithelium
xref: SCTID:309044005
xref: TAO:0001494
xref: XAO:0004006
xref: ZFA:0001494
property_value: UBPROP:0000001 "Epithelium that consists of more than one layer of epithelial cells.[AAO]" xsd:string
property_value: UBPROP:0000001 "Epithelium that consists of more than one layer of epithelial cells.[CARO]" xsd:string
property_value: UBPROP:0000001 "Epithelium that consists of more than one layer of epithelial cells.[TAO]" xsd:string
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000487
name: simple squamous epithelium
def: "Unilaminar epithelium which consists of a single layer of squamous cells. Examples: pulmonary alveolar epithelium, endothelium.[FMA]" [CARO:MAH, FMA:45565, Wikipedia:Simple_squamous_epithelium]
subset: uberon_slim
subset: vertebrate_core
synonym: "epithelium simplex squamosum" EXACT []
xref: AAO:0010066
xref: AEO:0000070
xref: BILA:0000070
xref: BTO:0002073
xref: CARO:0000070
xref: EHDAA2:0003070
xref: FMA:45565
xref: HAO:0000070
xref: http://upload.wikimedia.org/wikipedia/commons/8/8f/Illu_epithelium.jpg
xref: ncithesaurus:Simple_Squamous_Epithelium
xref: TAO:0001498
xref: XAO:0004010
xref: ZFA:0001498
property_value: UBPROP:0000001 "Unilaminar epithelium that consists of a single layer of squamous cells.[AAO]" xsd:string
property_value: UBPROP:0000001 "Unilaminar epithelium that consists of a single layer of squamous cells.[CARO]" xsd:string
property_value: UBPROP:0000001 "Unilaminar epithelium that consists of a single layer of squamous cells.[TAO]" xsd:string
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0006914 ! squamous epithelium
[Term]
id: UBERON:0000488
name: atypical epithelium
def: "Epithelium that consists of epithelial cells not arranged in one ore more layers." [CARO:MAH]
subset: vertebrate_core
synonym: "heterogenous epithelium" EXACT []
xref: AAO:0010057
xref: AEO:0000071
xref: BILA:0000071
xref: CARO:0000071
xref: EHDAA2:0003071
xref: FMA:61741
xref: HAO:0000071
xref: TAO:0001493
xref: XAO:0004004
xref: ZFA:0001493
property_value: UBPROP:0000001 "Epithelium that consists of epithelial cells not arranged in one or more layers.[TAO]" xsd:string
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000489
name: cavitated compound organ
def: "Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH]
subset: organ_slim
subset: upper_level
synonym: "cavitated organ" EXACT [FMA:55671]
xref: AAO:0010016
xref: AEO:0000072
xref: BILA:0000072
xref: CARO:0000072
xref: EHDAA2:0003072
xref: FMA:55671
xref: HAO:0000072
xref: TAO:0001490
xref: TGMA:0001857
xref: VHOG:0001730
xref: XAO:0003165
xref: ZFA:0001490
is_a: UBERON:0003103 ! compound organ
relationship: has_part UBERON:0002553
intersection_of: UBERON:0003103 ! compound organ
intersection_of: has_part UBERON:0002553 ! anatomical cavity
relationship: has_part UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0000490
name: unilaminar epithelium
def: "Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.[FMA]" [CARO:MAH, FMA:45561]
subset: vertebrate_core
synonym: "simple epithelium" EXACT []
xref: AAO:0010062
xref: AEO:0000073
xref: BILA:0000073
xref: BTO:0002073
xref: CARO:0000073
xref: EHDAA2:0003073
xref: FMA:45561
xref: HAO:0000073
xref: ncithesaurus:Simple_Epithelium
xref: SCTID:309043004
xref: TAO:0001495
xref: XAO:0004007
xref: ZFA:0001495
property_value: UBPROP:0000001 "Epithelium that consists of a single layer of epithelial cells.[AAO]" xsd:string
property_value: UBPROP:0000001 "Epithelium that consists of a single layer of epithelial cells.[CARO]" xsd:string
property_value: UBPROP:0000001 "Epithelium that consists of a single layer of epithelial cells.[TAO]" xsd:string
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000491
name: solid compound organ
def: "Compound organ that does not contain macroscopic anatomical spaces." [CARO:MAH]
subset: organ_slim
subset: upper_level
xref: AAO:0010019
xref: AEO:0000074
xref: BILA:0000074
xref: CARO:0000074
xref: EHDAA2:0003074
xref: HAO:0000074
xref: TAO:0001491
xref: TGMA:0001859
xref: XAO:0003164
xref: ZFA:0001491
is_a: UBERON:0003103 ! compound organ
[Term]
id: UBERON:0000569
name: ileocecal valve
def: "The ileocecal valve is a sphincter muscle situated at the junction of the small intestine (ileum) and the large intestine. Its critical function is to limit the reflux of colonic contents into the ileum." [Wikipedia:Ileocecal_valve]
synonym: "Tulp's valve" RELATED [Wikipedia:Ileocecal_valve]
synonym: "valva ileocaecalis" RELATED LATIN [Wikipedia:Ileocecal_valve]
synonym: "valva ileocaecalis (valva ilealis)" EXACT [FMA:15973]
xref: FMA:15973
xref: galen:IleocecalValve
xref: http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray1075.png
xref: ncithesaurus:Ileocecal_Valve
xref: SCTID:362153007
is_a: UBERON:0003978 {source="Obol"} ! valve
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0011185 ! gastrointestinal sphincter
relationship: part_of UBERON:0001073 {source="FMA"} ! ileocecal junction
[Term]
id: UBERON:0000642
name: suspensory ligament of duodenum
def: "Ligament that connects the duodenum of the small intestines to the diaphragm. It contains a slender band of skeletal muscle from the diaphragm and a fibromuscular band of smooth muscle from the horizontal and ascending parts of the duodenum. When it contracts, the suspensory muscle of the duodenum widens the angle of the duodenojejunal flexure, allowing movement of the intestinal contents It arises from the right crus as it passes around the esophagus, continues as connective tissue around the stems of the celiac trunk and superior mesenteric artery and inserts into the third and fourth portions of the duodenum and frequently into the duodenojejunal (DJ) flexure (between the duodenum and the jejunum) as well. " [Wikipedia:Suspensory_muscle_of_duodenum]
comment: an especially important landmark to note when looking at the bowel for the presence of malrotation of the gut, a syndrome often suspected in young children when they have episodes of recurrent vomiting. Visualizing a normal location of the ligament of Treitz in radiological images is critical in ruling out malrotation of the gut in a child; it is abnormally located when malrotation is present. An abnormally low and fixed position of the ligament of Treitz is a known cause of superior mesenteric artery syndrome. However, identifying it on a CT scan is difficult. Hematemesis (blood in the vomit) or melena (black tarry stools) usually indicate a gastrointestinal bleed from a location proximal to the ligament. Hematochezia (bright red blood or clots in the stools) usually indicates a gastrointestinal bleed from a location distal to the ligament.
synonym: "ligament of Treitz" EXACT [FMA:20509]
synonym: "muscle of Treitz" EXACT [FMA:20509]
synonym: "musculus suspensorius duodeni" EXACT [FMA:20509]
synonym: "musculus suspensorius duodeni" RELATED LATIN [Wikipedia:Suspensory_muscle_of_duodenum]
synonym: "suspensory muscle of duodenum" EXACT [FMA:20509]
xref: FMA:20509
xref: http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray1042.png
xref: SCTID:279979000
is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament
relationship: attaches_to UBERON:0002114
intersection_of: UBERON:0008841 ! suspensory ligament
intersection_of: attaches_to UBERON:0002114 ! duodenum
relationship: attaches_to UBERON:0001103 {source="Obol"} ! diaphragm
relationship: attaches_to UBERON:0002114 {source="Obol"} ! duodenum
relationship: attaches_to UBERON:0002114 ! duodenum
[Term]
id: UBERON:0000711
name: splenius capitis
def: "The splenius capitis is a broad, straplike muscle in the back of the neck. It pulls on the base of the skull from vertebrae in the neck and upper thorax. It arises from the lower half of the ligamentum nuchæ, from the spinous process of the seventh cervical vertebra, and from the spinous processes of the upper three or four thoracic vertebræ. The fibers of the muscle are directed upward and lateralward and are inserted, under cover of the Sternocleidomastoideus, into the mastoid process of the temporal bone, and into the rough surface on the occipital bone just below the lateral third of the superior nuchal line. The Splenius Capitis muscle is innervated by the dorsal rami of spinal nerves C3-C4. The splenius muscle is a prime mover for head extension. The splenius capitis can also allow lateral flexion and rotation of the cervical spine." [Wikipedia:Splenius_capitis_muscle]
synonym: "musculus splenius capitis" RELATED LATIN [Wikipedia:Splenius_capitis_muscle]
synonym: "splenius capitis muscle" EXACT [Wikipedia:Splenius_capitis_muscle]
xref: FMA:22653
xref: http://upload.wikimedia.org/wikipedia/commons/5/51/Splenius.png
xref: SCTID:244850004
is_a: UBERON:0002252 {source="FMA"} ! splenius
is_a: UBERON:0002377 ! muscle of neck
relationship: has_muscle_insertion UBERON:0011220 {source="Wikipedia:Mastoid_process"} ! mastoid process of temporal bone
relationship: has_muscle_origin UBERON:0000351 {source="dbpedia", notes="Ligamentum nuchae spinous process of C7-T6"} ! nuchal ligament
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0000908
name: hippocampal commissure
alt_id: UBERON:Commissure-MA_0002723
def: "The lateral portions of the body of the fornix are joined by a thin triangular lamina, named the psalterium (lyra). This lamina contains some transverse fibers that connect the two hippocampi across the middle line and constitute the commissure of fornix (hippocampal commissure)." [Wikipedia:Commissure_of_fornix]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "commissura hippocampi" EXACT [FMA:61970, FMA:TA]
synonym: "commissure of fornix" RELATED [Wikipedia:Commissure_of_fornix]
synonym: "commissure of fornix of forebrain" EXACT [FMA:61970]
synonym: "delta fornicis" EXACT [MP:0008221]
synonym: "dorsal hippocampal commissure" EXACT [FMA:61970]
synonym: "fornical commissure" EXACT [FMA:61970]
synonym: "fornix commissure" EXACT [FMA:61970]
synonym: "hippocampus commissure" EXACT [MP:0008221]
xref: FMA:61970
xref: http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png
xref: MA:0002723
xref: NIF_GrossAnatomy:birnlex_746
xref: SCTID:369115003
is_a: UBERON:0005340 ! dorsal telencephalic commissure
is_a: UBERON:0005970 ! brain commissure
relationship: part_of UBERON:0002316 ! white matter
relationship: part_of UBERON:0002437 ! cerebral white matter
[Term]
id: UBERON:0000910
name: chyme
def: "Chyme is a bodily fluid consisting of a liquid substance found in the stomach before passing through the pyloric valve and entering the duodenum. It results from the mechanical and chemical breakdown of a bolus and consists of partially digested food, water, hydrochloric acid, and various digestive enzymes." [Wikipedia:Chyme]
synonym: "chymus" EXACT [ENVO:02000026]
xref: ENVO:02000026
xref: FMA:62961
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000911
name: chyle
def: "Chyle is a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats." [http://wordnet.princeton.edu/perl/webwn?s=chyle, Wikipedia:Chyle]
xref: ENVO:02000030
xref: FMA:61403
xref: GAID:1187
xref: MESH:A.12.207.630.350
xref: ncithesaurus:Chyle
is_a: UBERON:0000463 ! portion of organism substance
relationship: has_part UBERON:0002391 ! lymph
[Term]
id: UBERON:0000912
name: mucus
def: "Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water." [Wikipedia:Mucus]
xref: ENVO:02000040
xref: FMA:66938
xref: GAID:1164
xref: galen:Mucus
xref: MESH:A.12.200.503
xref: ncithesaurus:Mucus
xref: OpenCyc:Mx4rvVjHq5wpEbGdrcN5Y29ycA
is_a: UBERON:0000456 ! bodily secretion
relationship: secreted_by UBERON:0000344 ! mucosa
[Term]
id: UBERON:0000913
name: interstitial fluid
def: "Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid." [FMA:9673, Wikipedia:Interstitial_fluid]
synonym: "intercellular fluid" EXACT [ENVO:02000042]
synonym: "tissue fluid" EXACT [ENVO:02000042]
xref: ENVO:02000042
xref: FMA:9673
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000914
name: organismal segment
def: "One of the repeated divisions of the whole organism." [FB:gg, Wikipedia:Segmentation_(biology)]
comment: editor note: review this post-CARO2
subset: uberon_slim
synonym: "segment" EXACT [FBbt:00000003]
xref: FBbt:00000003
xref: HAO:0000929
xref: MAT:0000271
xref: MIAA:0000271
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000915
name: thoracic segment of trunk
def: "Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax]
comment: Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest
subset: uberon_slim
synonym: "thorax" RELATED [MA:0000022]
synonym: "upper body" RELATED []
xref: FMA:259209
xref: MA:0000022
xref: SCTID:302551006
property_value: "spatially_disjoint_from" UBERON:0000026
property_value: "spatially_disjoint_from" UBERON:0000033
property_value: "spatially_disjoint_from" UBERON:0002417
is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk
is_a: UBERON:0011676 ! axial subdivision of organism
[Term]
id: UBERON:0000916
name: abdomen
def: "In vertebrates such as mammals the abdomen (belly) constitutes the part of the body between the thorax (chest) and pelvis. The region enclosed by the abdomen is termed the abdominal cavity." [Wikipedia:Abdomen]
comment: Taxon notes: Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class
subset: uberon_slim
synonym: "abdominopelvic region" EXACT [FMA:9577]
synonym: "abdominopelvis" EXACT [FMA:9577]
synonym: "adult abdomen" RELATED []
synonym: "belly" RELATED []
xref: BTO:0000020
xref: EFO:0000968
xref: EV:0100011
xref: FMA:9577
xref: GAID:16
xref: galen:Abdomen
xref: MA:0000029
xref: MAT:0000298
xref: MESH:A.01.047
xref: MIAA:0000298
xref: OpenCyc:Mx4rvVjgyZwpEbGdrcN5Y29ycA
xref: SCTID:302553009
is_a: UBERON:0009569 ! subdivision of trunk
relationship: part_of UBERON:0002417 {source="MA"} ! abdominal segment of trunk
[Term]
id: UBERON:0000917
name: abdominal segment
synonym: "segment of abdomen" EXACT [OBOL:automatic]
is_obsolete: true
consider: UBERON:0002417
[Term]
id: UBERON:0000918
name: yolk
def: "The nutritive substance contained in the egg." [FB:gg]
synonym: "vegetal yolk mass" BROAD []
synonym: "yolk cell" RELATED []
xref: MAT:0000335
xref: MIAA:0000335
is_obsolete: true
consider: UBERON:0007378
[Term]
id: UBERON:0000919
name: lipid droplet
is_obsolete: true
[Term]
id: UBERON:0000920
name: egg chorion
def: "A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish [GO]." [GO:0042600, Wikipedia:Chorion_(egg)]
subset: dubious_grouping
subset: uberon_slim
subset: vertebrate_core
synonym: "chorion" RELATED []
synonym: "chorion (egg)" EXACT []
xref: FBbt:00000038
xref: TAO:0000329
xref: TGMA:0000681
xref: ZFA:0000329
property_value: UBPROP:0000001 "The egg shell. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0000478 ! extraembryonic structure
disjoint_from: UBERON:0003124 ! chorion
relationship: surrounds UBERON:0003125 ! vitelline membrane
[Term]
id: UBERON:0000921
name: pronucleus
def: "." [Wikipedia:Pronucleus]
is_obsolete: true
[Term]
id: UBERON:0000922
name: embryo
def: "Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." [BTO:0000379, FB:FBrf0039741, FB:FBrf0041814, GO:0009790, Wikipedia:Embryo]
comment: Obsoleted in ZFA. Note that embryo is not classified as an embryonic structure - an embryonic structure is only the parts of an embryo
subset: uberon_slim
subset: vertebrate_core
synonym: "developing organism" RELATED [BILA:0000056]
synonym: "developmental tissue" RELATED []
synonym: "embryonic organism" EXACT [BILA:0000056]
xref: AAO:0011035
xref: AEO:0000169
xref: BILA:0000056
xref: BTO:0000379
xref: EFO:0001367
xref: EHDAA2:0003236
xref: EHDAA:38
xref: EMAPA:16039
xref: FBbt:00000052
xref: FMA:69068
xref: GAID:963
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Wrinkledfrog_embryos.jpg
xref: MAT:0000226
xref: MESH:A.16.254
xref: MIAA:0000019
xref: ncithesaurus:Embryo
xref: OGEM:000001
xref: OpenCyc:Mx4rwP1ceZwpEbGdrcN5Y29ycA
xref: SCTID:57991002
xref: VHOG:0001766
xref: XAO:0000113
xref: ZFA:0000103
is_a: UBERON:0000468 ! multi-cellular organism
relationship: existence_ends_with UBERON:0000068
relationship: existence_starts_with UBERON:0000068
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_ends_with UBERON:0000068 ! embryo stage
intersection_of: existence_starts_with UBERON:0000068 ! embryo stage
relationship: existence_ends_with UBERON:0000068 ! embryo stage
relationship: existence_starts_with UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000923
name: germ layer
def: "A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm." [Wikipedia:Germ_layer]
comment: Classically the germ layers are ectoderm, mesoderm and endoderm. Alternatively: primary = ectoderm, endoderm; secondary=mesoderm; tertiary=dorsal mesoderm, NC[UBERONREF:0000002]
subset: uberon_slim
subset: vertebrate_core
synonym: "embryonic germ layer" RELATED []
synonym: "embryonic germ layers" RELATED []
synonym: "embryonic tissue" BROAD [FMA:69069]
synonym: "germinal layer" EXACT [ncithesaurus:Germinal_Layer]
synonym: "primary germ layer" NARROW [GO:0001704, ZFA:0001122]
xref: AAO:0000480
xref: BILA:0000035
xref: BTO:0000556
xref: FBbt:00000110
xref: FMA:69069
xref: GAID:1303
xref: MESH:A.16.254.425
xref: ncithesaurus:Embryonic_Tissue
xref: ncithesaurus:Germinal_Layer
xref: TAO:0001122
xref: VHOG:0001223
xref: XAO:0003011
xref: ZFA:0001122
is_a: UBERON:0010316 ! germ layer / neural crest
relationship: develops_from UBERON:0002532 ! epiblast
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0000924
name: ectoderm
def: "Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [Wikipedia:Ectoderm]
subset: uberon_slim
subset: vertebrate_core
synonym: "embryonic ectoderm" EXACT [VHOG:0000153]
xref: AAO:0000137
xref: BILA:0000036
xref: BTO:0000315
xref: EFO:0000414
xref: EHDAA2:0000428
xref: EMAPA:16069
xref: EV:0100003
xref: FBbt:00000111
xref: FMA:69070
xref: GAID:1304
xref: http://upload.wikimedia.org/wikipedia/commons/1/19/Gray32.png
xref: MAT:0000155
xref: MAT:0000173
xref: MESH:A.16.254.425.273
xref: MIAA:0000173
xref: ncithesaurus:Ectoderm
xref: SCTID:362851007
xref: TAO:0000016
xref: VHOG:0000153
xref: XAO:0000001
xref: ZFA:0000016
property_value: UBPROP:0000001 "Primary germ layer that is the outer of the embryonic germ layers and gives rise to epidermis and neural tissue.[AAO]" xsd:string
is_a: UBERON:0000923 ! germ layer
relationship: develops_from UBERON:0006601 {source="cjm"} ! presumptive ectoderm
[Term]
id: UBERON:0000925
name: endoderm
def: "Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [Wikipedia:Endoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "entoderm" RELATED []
xref: AAO:0000139
xref: BILA:0000038
xref: BTO:0000800
xref: EFO:0002545
xref: EHDAA2:0000436
xref: EV:0100005
xref: FBbt:00000125
xref: FMA:69071
xref: GAID:1305
xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Endoderm2.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray10.png/200px-Gray10.png
xref: MAT:0000175
xref: MESH:A.16.254.425.407
xref: MIAA:0000175
xref: ncithesaurus:Endoderm
xref: SCTID:362855003
xref: TAO:0000017
xref: VHOG:0000154
xref: XAO:0000090
xref: ZFA:0000017
is_a: UBERON:0000923 ! germ layer
relationship: develops_from UBERON:0006595 {source="ZFA"} ! presumptive endoderm
[Term]
id: UBERON:0000926
name: mesoderm
alt_id: UBERON:0003263
def: "The middle germ layer of the embryo, between the endoderm and ectoderm." [Wikipedia:Mesoderm]
comment: Taxon notes: sponges do not seem to have a mesoderm and accordingly Amphimedon lacks transcription factors involved in mesoderm development (Fkh, Gsc, Twist, Snail)[http://www.nature.com/nature/journal/v466/n7307/full/nature09201.html]. Mesoderm may not be homologous across verteberates[UBERONREF:0000002]
subset: uberon_slim
subset: vertebrate_core
synonym: "entire mesoderm" RELATED [SCTID:362854004, UBERON:cjm]
synonym: "mesodermal mantle" RELATED []
xref: AAO:0000304
xref: BILA:0000037
xref: BTO:0000839
xref: EFO:0001981
xref: EHDAA2:0001128
xref: EHDAA:124
xref: EHDAA:160
xref: EHDAA:168
xref: EHDAA:183
xref: EMAPA:16083
xref: EV:0100006
xref: FBbt:00000126
xref: FMA:69072
xref: GAID:522
xref: http://upload.wikimedia.org/wikipedia/commons/e/e8/Mesoderm.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Mesoderm.png/200px-Mesoderm.png
xref: MAT:0000174
xref: MESH:A.16.254.425.660
xref: MIAA:0000174
xref: ncithesaurus:Mesoderm
xref: SCTID:362854004
xref: TAO:0000041
xref: VHOG:0000152
xref: XAO:0000050
xref: ZFA:0000041
property_value: RO:0002161 NCBITaxon:6040
property_value: UBPROP:0000001 "Primary germ layer that is the middle of the embryonic germ layers.[AAO]" xsd:string
is_a: UBERON:0000923 {notes="sometimes not considered primary"} ! germ layer
relationship: develops_from UBERON:0006603 {source="ZFA"} ! presumptive mesoderm
[Term]
id: UBERON:0000927
name: mesectoderm
def: "A double row of cells which are located at the midline from the end of gastrulations. The morphology of these cells is distinct from adjacent ectodermal cells - they are elongated such that one end remains exposed to the outside of the embryo at the mideline while the other end bissects the internalised mesoderm." [FB:FBrf0089570]
comment: Split term? The part of the mesenchyme derived from ectoderm, especially from the embryonic neural crest from which the pigment cells, meninges, and most of the branchial cartilages develop.[TFD]
subset: uberon_slim
synonym: "MesEc" RELATED []
xref: FBbt:00000136
xref: MAT:0000243
xref: MIAA:0000243
is_a: UBERON:0000923 ! germ layer
relationship: adjacent_to UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0000928
name: embryonic segment
comment: This class was created automatically from a combination of ontologies
synonym: "segment - embryonic" EXACT []
xref: FBbt:00000154
xref: MAT:0000244
xref: MIAA:0000244
is_a: UBERON:0000914 ! organismal segment
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0000929
name: pharyngeal branch of vagus nerve
def: "Motor nerve of the pharynx, arises from the upper part of the ganglion nodosum, and consists principally of filaments from the cranial portion of the accessory nerve." [Wikipedia:Pharyngeal_branch_of_vagus_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pharyngeal branch" EXACT []
synonym: "pharyngeal branch of inferior vagal ganglion" EXACT []
synonym: "pharyngeal branch of vagus nerve" EXACT []
synonym: "ramus pharyngealis nervi vagalis" EXACT []
synonym: "ramus pharyngeus" EXACT [FMA:6234, FMA:TA]
synonym: "ramus pharyngeus nervi vagi" RELATED LATIN [Wikipedia:Pharyngeal_branch_of_vagus_nerve]
synonym: "tenth cranial nerve pharyngeal branch" EXACT []
synonym: "vagal pharyngeal branch" EXACT []
synonym: "vagus nerve pharyngeal branch" EXACT []
xref: FMA:6234
xref: http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png
xref: SCTID:280298006
is_a: UBERON:0001021 ! nerve
relationship: part_of UBERON:0001005 ! respiratory airway
relationship: part_of UBERON:0001759 ! vagus nerve
[Term]
id: UBERON:0000930
name: stomodeum
def: "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth[ZFA]. In humans, a depression between the brain and the pericardium in an embryo, and is the precursor of the mouth and the anterior lobe of the pituitary gland. The stomodeum is lined by ectoderm, and is separated from the anterior end of the fore-gut by the buccopharyngeal membrane. This membrane is devoid of mesoderm, being formed by the apposition of the stomodeal ectoderm with the fore-gut endoderm; at the end of the third week it disappears, and thus a communication is established between the mouth and the future pharynx[WP]. The anterior part of the embryonic digestive system deriving from the stomodeal invagination of the ectoderm[FBbt]." [Wikipedia:Stomodeum]
comment: Editor note: consider indicating location. e.g. anterior. Note some AOs place this as part of oral opening, but it's not clear when this structure comes into existence. Taxon note: This class groups together disparate structures as all being the anterior part of the early metazoan digestive tract and precursor of the mouth. However, the developmental processes vary, so this class may be split in future. E.g. in mammals it is a rostral depression surrounded by prominences. Outgrowth of the prominences produces a stomodeal cavity.
subset: grouping_class
subset: uberon_slim
subset: vertebrate_core
synonym: "mouth primordium" EXACT [XAO:0000269]
synonym: "primitive oral cavity" EXACT [UBERON:cjm]
synonym: "stomatodeum" EXACT [Wikipedia:Stomodeum]
synonym: "stomodaeum" EXACT []
xref: BTO:0004224
xref: EHDAA2:0001929
xref: EMAPA:16263
xref: FBbt:00000439
xref: http://upload.wikimedia.org/wikipedia/commons/9/93/Gray977.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray977.png/200px-Gray977.png
xref: ncithesaurus:Stomodeum
xref: TAO:0001290
xref: TGMA:0000135
xref: XAO:0000269
xref: ZFA:0001290
property_value: UBPROP:0000001 "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth.[TAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003102 {source="ZFA"} ! surface structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0007026 ! primitive gut
[Term]
id: UBERON:0000931
name: proctodeum
def: "Inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage[ZFA]. A proctodeum is the back ectodermal part of an alimentary canal. It is created during embryogenesis by a folding of the outer body wall[WP]." [Wikipedia:Proctodeum]
comment: removed WBbt:0006795 - junction between the alimentary and genital tracts in the male.
subset: uberon_slim
synonym: "proctodaeum" EXACT []
xref: AAO:0011087
xref: FBbt:00000440
xref: ncithesaurus:Proctodeum
xref: SCTID:298233001
xref: TAO:0000066
xref: VHOG:0000139
xref: XAO:0001019
xref: ZFA:0000066
property_value: UBPROP:0000001 "An inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage.[TAO]" xsd:string
property_value: UBPROP:0000001 "Inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage.[AAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_into UBERON:0001353 ! anal region
relationship: part_of UBERON:0007026 ! primitive gut
[Term]
id: UBERON:0000932
name: ventral longitudinal muscle
comment: originally unified on basis of terminological similarity
is_obsolete: true
[Term]
id: UBERON:0000933
name: pharyngeal muscle
def: "A muscle that acts on the pharynx[WP, vetted]." [UBERON:cjm, Wikipedia:Pharyngeal_muscles]
comment: Innervation notes: They are innervated by the pharyngeal branch of the Vagus nerve (CN X) with the exception of the stylopharyngeus muscle which is innervated by the glossopharyngeal nerve (CN IX).[WP]
synonym: "branchial muscle" EXACT [ZFA:0000172]
synonym: "muscle of pharynx" EXACT []
synonym: "muscle organ of pharynx" EXACT [OBOL:automatic]
synonym: "musculi pharyngis" RELATED LATIN [Wikipedia:Pharyngeal_muscles]
synonym: "musculus pharyngis" RELATED [BTO:0001048]
synonym: "pharynx muscle" EXACT []
synonym: "pharynx muscle organ" EXACT [OBOL:automatic]
synonym: "tunica muscularis pharyngis" RELATED LATIN [Wikipedia:Pharyngeal_muscles]
xref: BTO:0001048
xref: FMA:46619
xref: GAID:154
xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Gray1030.png
xref: MA:0001797
xref: MESH:A.02.633.567.800
xref: ncithesaurus:Pharyngeal_Muscle
xref: SCTID:244798004
xref: TAO:0000172
xref: ZFA:0000172
property_value: UBPROP:0000001 "A pharyngeal muscle is any muscle that forms part of the pharynx[GO]." xsd:string
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0004467 {source="ZFA"} ! musculature of pharynx
[Term]
id: UBERON:0000934
name: ventral nerve cord
def: "The pair of closely united ventral longitudinal nerves with their segmental ganglia that is characteristic of many elongate invertebrates (as earthworms)[BTO]. A large process bundle that runs along the vental mid-line extending from the ventral region of the nerve ring[WB]. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms[GO]." [BTO:0002328, GO:0007419, WB:Paper00000938, Wikipedia:Ventral_nerve_cord]
comment: The ventral nerve cords make up the nervous system of some phyla of the invertebrates, particularly within the nematodes, annelids and the arthropods. It usually consists of cerebral ganglia anteriorly with the nerve cords running down the ventral ('belly', as opposed to back) plane of the organism. This characteristic is important in qualifying the difference compared to the chordates, which have a dorsal nerve cord. Ventral nerve cords from anterior to posterior (the thoracic and abdominal tagma in the arthropods) are made up of segmented ganglia that are connected by a tract of nerve fibers passing from one side to the other of the nerve cord called commissures. The complete system bears some likeness to a rope ladder. In some animals the bilateral ganglia are fused into a single large ganglion per segment. This characteristic is found mostly in the insects.
subset: uberon_slim
synonym: "ventral cord" EXACT [GO:0007419]
xref: BTO:0002328
xref: EFO:0000896
xref: FBbt:00001102
xref: MAT:0000339
xref: MIAA:0000339
xref: WBbt:0005829
property_value: RO:0002161 NCBITaxon:7711
is_a: UBERON:0005053 ! nerve cord
[Term]
id: UBERON:0000935
name: anterior commissure
def: "bundle of nerve fibers (white matter), connecting the two cerebral hemispheres across the midline, and placed in front of the columns of the fornix. The great majority of fibers connecting the two hemispheres travel through the corpus callosum, which is over 10 times larger than the anterior commissure, and other routes of communication pass through the hippocampal commissure or, indirectly, via subcortical connections. Nevertheless, the anterior commissure is a significant pathway that can be clearly distinguished in the brains of all mammals." [Wikipedia:Anterior_commissure]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "commissura anterior" RELATED LATIN [Wikipedia:Anterior_commissure]
synonym: "commissura anterior" RELATED []
synonym: "commissura rostral" RELATED []
synonym: "commissura rostralis" EXACT []
synonym: "precommisure" RELATED [Wikipedia:Anterior_commisure]
synonym: "rostral commissure" RELATED []
xref: BM:Tel-AC
xref: BTO:0002169
xref: EMAPA:19038
xref: FMA:61961
xref: http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray744.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray744.png/200px-Gray744.png
xref: MA:0002722
xref: ncithesaurus:Anterior_Commissure
xref: NIF_GrossAnatomy:Class_4
xref: SCTID:369119009
xref: TAO:0001108
xref: VHOG:0001558
xref: ZFA:0001108
is_a: UBERON:0002473 ! intercerebral commissure
[Term]
id: UBERON:0000936
name: posterior commissure
def: "Rounded band of white fibers crossing the middle line on the dorsal aspect of the upper end of the cerebral aqueduct. It is important in the bilateral pupillary light reflex. Its fibers acquire their medullary sheaths early, but their connections have not been definitely determined. Most of them have their origin in a nucleus, the nucleus of the posterior commissure (nucleus of Darkschewitsch), which lies in the central gray substance of the upper end of the cerebral aqueduct, in front of the nucleus of the oculomotor nerve. Some are probably derived from the posterior part of the thalamus and from the superior colliculus, whereas others are believed to be continued downward into the medial longitudinal fasciculus. The posterior commissure interconnects the pretectal nuclei, mediating the consensual pupillary light reflex[WP].Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain[ZFA]." [Wikipedia:Posterior_commissure, ZFA:0000320]
comment: AO notes: part_of brainstem in MA; midbrain tectum in NIF
subset: uberon_slim
subset: vertebrate_core
synonym: "caudal commissure" EXACT [FMA:62072, ZFA:0000320]
synonym: "commissura posterior" RELATED LATIN [Wikipedia:Posterior_commissure]
synonym: "epithalamic commissure" EXACT [FMA:62072]
xref: BM:MB-Tec-PC
xref: FMA:62072
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png
xref: MA:0002743
xref: ncithesaurus:Posterior_Commissure
xref: NIF_GrossAnatomy:birnlex_1026
xref: TAO:0000320
xref: ZFA:0000320
is_a: UBERON:0011590 ! commissure of diencephalon
relationship: part_of UBERON:0001894 {source="FMA"} ! diencephalon
[Term]
id: UBERON:0000937
name: proneural cluster
comment: obsoleted because inconsistencies arise due to ZFA term being both embryonic and extraembryonic
synonym: "proneural clusters" RELATED [ZFA:0000068]
is_obsolete: true
[Term]
id: UBERON:0000939
name: imaginal disc
def: "A tissue in the larva which gives rise to the adult external cuticle." [FB:gg, Wikipedia:Imaginal_disc]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "imaginal disk" RELATED []
xref: BTO:0004658
xref: FBbt:00001761
xref: MAT:0000064
xref: MIAA:0000064
is_a: UBERON:0000481 ! multi-tissue structure
[Term]
id: UBERON:0000941
name: cranial nerve II
def: "Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]." [ISBN:0471209627, Wikipedia:Optic_nerve, ZFA:0000435]
comment: Editor notes: A sensory tract that develops as an outpocketing of the brain - we classify as a cranial nerve as is traditional, but not strictly a nerve. AO notes: (relaion to eye): MA, XAO, AAO and BTO consider this part of the eye. This is in contrast to GO, FMA, EHDAA2 (FMA has a class 'intra-ocular part of optic nerve' which represents the region of overlap). Relation to brain: part of diencephalon in EHDAA2, ZFA. In NIF, has the optic nerve root as part, which is a feature part of the diencphalon. Structure notes: We are consistent here with the FMA in considering CN-II continuous with the retina. Editor notes: - determine the precise relationship between CN II and the CNS
subset: uberon_slim
subset: vertebrate_core
synonym: "02 optic nerve" EXACT [AAO:0010345]
synonym: "CN-II" RELATED [ZFA:0000435]
synonym: "cranial II" EXACT []
synonym: "nervus opticus" EXACT []
synonym: "nervus opticus [II]" EXACT [FMA:50863, FMA:TA]
synonym: "optic II" EXACT [EHDAA2:0001313]
synonym: "optic II nerve" EXACT [EHDAA2:0001313]
synonym: "optic nerve" BROAD SENSU [FMA:50863, ZFA:0000435]
synonym: "optic nerve [II]" EXACT []
synonym: "second cranial nerve" EXACT []
xref: AAO:0010345
xref: EHDAA2:0001313
xref: EHDAA:6788
xref: EMAPA:17575
xref: EMAPA:17846
xref: FMA:50863
xref: GAID:831
xref: MA:0001097
xref: MESH:A.08.800.800.120.680
xref: ncithesaurus:Optic_Nerve
xref: NIF_GrossAnatomy:birnlex_1640
xref: OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA
xref: SCTID:180938001
xref: TAO:0000435
xref: VHOG:0000543
xref: XAO:0000188
xref: ZFA:0000435
property_value: UBPROP:0000001 "A collection of nerve cells that project visual information from the eyes to the brain. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string
property_value: UBPROP:0000001 "Fibrous, somatic sensory element covered by a fibrous connective-tissue sheath and is continuous with the layer of nerve cells on the inner surface of the eye.[AAO]" xsd:string
is_a: UBERON:0001785 ! cranial nerve
is_a: UBERON:0002464 ! nerve trunk
is_a: UBERON:0004904 ! nerve connecting eye with brain
relationship: continuous_with UBERON:0000959
relationship: continuous_with UBERON:0000966
intersection_of: UBERON:0001785 ! cranial nerve
intersection_of: continuous_with UBERON:0000959 ! optic chiasma
intersection_of: continuous_with UBERON:0000966 ! retina
relationship: continuous_with UBERON:0000959 ! optic chiasma
relationship: continuous_with UBERON:0000966 ! retina
relationship: continuous_with UBERON:0003098 ! optic stalk
relationship: develops_from UBERON:0003902 {source="EHDAA2"} ! retinal neural layer
relationship: part_of UBERON:0002104 ! visual system
[Term]
id: UBERON:0000942
name: frontal nerve
def: "The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebræ superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]." [Wikipedia:Frontal_nerve]
subset: uberon_slim
synonym: "nervus frontalis" RELATED LATIN [Wikipedia:Frontal_nerve]
xref: FMA:52638
xref: http://upload.wikimedia.org/wikipedia/commons/4/45/Gray787.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/45/Gray787.png/200px-Gray787.png
xref: ncithesaurus:Frontal_Nerve
xref: SCTID:280219004
is_a: UBERON:0001021 ! nerve
[Term]
id: UBERON:0000943
name: labial sensillum
is_obsolete: true
[Term]
id: UBERON:0000944
name: dorsal branch
synonym: "dorsal vein" EXACT []
synonym: "ramus dorsalis" EXACT [FMA:76733, FMA:TA]
is_obsolete: true
[Term]
id: UBERON:0000945
name: stomach
def: "An expanded region of the vertebrate alimentary tract that serves as a food storage compartment and digestive organ. A stomach is lined, in whole or in part by a glandular epithelium." [ISBN10:0073040584, UBERON:cjm, Wikipedia:Stomach]
comment: Taxon notes: We restrict this to the vertebrate specific structure - see the grouping class 'food storage organ' for analogous structures in other species. Teleosts: Zebrafish is functionally stomach-less, but may retain ontogenic footprint. Although the precise shape and size of the stomach varies widely among different vertebrates, the relative positions of the oesophageal and duodenal openings remain relatively constant. As a result, the organ always curves somewhat to the left before curving back to meet the pyloric sphincter. However, lampreys, hagfishes, chimaeras, lungfishes, and some teleost fish have no stomach at all, with the oesophagus opening directly into the intestine. The gastric lining is usually divided into two regions, an anterior portion lined by fundic glands, and a posterior with pyloric glands. Cardiac glands are unique to mammals, and even then are absent in a number of species. The distributions of these glands vary between species, and do not always correspond with the same regions as in man. Furthermore, in many non-human mammals, a portion of the stomach anterior to the cardiac glands is lined with epithelium essentially identical to that of the oesophagus. Ruminants, in particular, have a complex stomach, the first three chambers of which are all lined with oesophageal mucosa -- Stomach#In_other_animals
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior intestine" RELATED []
synonym: "gaster" RELATED [BTO:0001307]
synonym: "mesenteron" RELATED []
synonym: "stomach" RELATED []
synonym: "Ventricular" RELATED LATIN [Wikipedia:Stomach]
synonym: "ventriculus" RELATED []
xref: AAO:0000579
xref: ANISEED:1235297
xref: BTO:0001307
xref: EFO:0000837
xref: EHDAA2:0001915
xref: EHDAA:2993
xref: EMAPA:17021
xref: EMAPA:18889
xref: EV:0100070
xref: FMA:7148
xref: GAID:293
xref: galen:Stomach
xref: http://upload.wikimedia.org/wikipedia/commons/e/e0/Stomach_diagram.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e0/Stomach_diagram.svg/200px-Stomach_diagram.svg.png
xref: MA:0000353
xref: MAT:0000051
xref: MESH:A.03.492.766
xref: MIAA:0000051
xref: ncithesaurus:Stomach
xref: OpenCyc:Mx4rvVjlqpwpEbGdrcN5Y29ycA
xref: SCTID:181246003
xref: TAO:0002121
xref: VHOG:0000408
xref: XAO:0000128
property_value: RO:0002161 NCBITaxon:7955
property_value: UBPROP:0000001 "Portion of alimentary canal with increased circular and longitudinal smooth muscle. Bounded posteriorly by the pyloric sphincter. Mucosal lining has increased folding.[AAO]" xsd:string
is_a: UBERON:0010039 ! food storage organ
relationship: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0000946
name: cardial valve
def: "Flap of tissue that prevents regurgitation of blood from the ventricles to the atria or from the pulmonary arteries or aorta to the ventricles." [Wikipedia:Cardiac_valve]
comment: Terminology notes: Rector et al: One might be tempted to define “heart valve” equivalently to “valve in the heart”, and “valve” as a “structure which functions as a valve”. But this combination results in the “foramen ovale” being classified as a kind of “heart valve”, since it is undoubtedly located in the heart and functions as a valve
subset: uberon_slim
subset: vertebrate_core
synonym: "cardiac valve" RELATED [GO:0003170]
synonym: "heart valve" EXACT []
synonym: "heart valves" RELATED []
synonym: "stomodaeal valve" RELATED []
synonym: "valve of heart" EXACT []
xref: BTO:0000564
xref: EMAPA:17869
xref: EV:0100024
xref: FMA:7110
xref: GAID:176
xref: galen:HeartValve
xref: MA:0000086
xref: MESH:A.07.541.510
xref: ncithesaurus:Cardiac_Valve
xref: OpenCyc:Mx4rv8oyuJwpEbGdrcN5Y29ycA
xref: SCTID:181285005
xref: TAO:0005065
xref: VHOG:0000818
xref: XAO:0004126
xref: ZFA:0005065
is_a: UBERON:0003978 ! valve
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
disjoint_from: UBERON:0004754 ! foramen ovale of heart
relationship: develops_from UBERON:0002062 {source="PMID:15797462"} ! endocardial cushion
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0000947
name: aorta
def: "Artery carrying blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation" [Wikipedia:Aorta]
comment: Editor notes: This class is currently a mixed bag, encompassing (1) the entirety of the mammalian aorta together with (2) the developmental and phylogenetic homologs of its segments: the ventral aorta and dorsal aortae. Taxon notes: All amniotes have a broadly similar arrangement to that of humans, albeit with a number of individual variations. In fish, however, there are two separate vessels referred to as aortas. The ventral aorta carries de-oxygenated blood from the heart to the gills; part of this vessel forms the ascending aorta in tetrapods (the remainder forms the pulmonary artery). A second, dorsal aorta carries oxygenated blood from the gills to the rest of the body, and is homologous with the descending aorta of tetrapods. The two aortas are connected by a number of vessels, one passing through each of the gills. Amphibians also retain the fifth connecting vessel, so that the aorta has two parallel arches[WP].
subset: grouping_class
subset: uberon_slim
synonym: "aorta, arteria maxima" RELATED LATIN [Wikipedia:Aorta]
synonym: "dorsal aorta" NARROW SENSU [Wikipedia:Aorta#In_other_animals, ZFA:0000014]
synonym: "trunk of aortic tree" EXACT []
synonym: "trunk of systemic arterial tree" EXACT []
xref: AAO:0010213
xref: BTO:0000135
xref: EFO:0000265
xref: EMAPA:18601
xref: EV:0100027
xref: FMA:3734
xref: GAID:469
xref: galen:Aorta
xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Aorta_scheme.jpg
xref: MA:0000062
xref: MAT:0000035
xref: MESH:A.07.231.114.056
xref: MIAA:0000035
xref: ncithesaurus:Aorta
xref: OpenCyc:Mx4rvVjvTpwpEbGdrcN5Y29ycA
xref: SCTID:181298001
xref: VHOG:0001523
xref: XAO:0003010
property_value: UBPROP:0000001 "The main artery of the circulatory system which carries oxygenated blood from the heart to all the arteries of the body except those of the lungs.[AAO]" xsd:string
is_a: UBERON:0004573 ! systemic artery
relationship: overlaps UBERON:0002224 {source="MA-modified"} ! thoracic cavity
relationship: part_of UBERON:0004571 {source="Wikipedia"} ! systemic arterial system
relationship: part_of UBERON:0010191 {source="EHDAA2"} ! aortic system
[Term]
id: UBERON:0000948
name: heart
def: "a myogenic muscular organ found in the cardiovascular system. It is responsible for pumping blood throughout the blood vessels by repeated, rhythmic contractions. The vertebrate heart is composed of cardiac muscle, which is an involuntary striated muscle tissue found only in this organ, and connective tissue. Primitive fish have a four-chambered heart; however, the chambers are arranged sequentially so that this primitive heart is quite unlike the four-chambered hearts of mammals and birds. The first chamber is the sinus venosus, which collects de-oxygenated blood, from the body, through the hepatic and cardinal veins. From here, blood flows into the atrium and then to the powerful muscular ventricle where the main pumping action takes place. The fourth and final chamber is the conus arteriosus which contains several valves and sends blood to the ventral aorta. The ventral aorta delivers blood to the gills where it is oxygenated and flows, through the dorsal aorta, into the rest of the body. (In tetrapods, the ventral aorta has divided in two; one half forms the ascending aorta, while the other forms the pulmonary artery. In the adult fish, the four chambers are not arranged in a straight row but, instead, form an S-shape with the latter two chambers lying above the former two. This relatively simpler pattern is found in cartilaginous fish and in the more primitive ray-finned fish. In teleosts, the conus arteriosus is very small and can more accurately be described as part of the aorta rather than of the heart proper. The conus arteriosus is not present in any amniotes which presumably having been absorbed into the ventricles over the course of evolution. Similarly, while the sinus venosus is present as a vestigial structure in some reptiles and birds, it is otherwise absorbed into the right atrium and is no longer distinguishable[WP]." [Wikipedia:Heart]
comment: note that we use the term 'circulatory organ' for the generic class. Taxon notes:" the ascidian tube-like heart lacks chambers....The ascidian heart is formed after metamorphosis as a simple tube-like structure with a single-layered myoepi- thelium that is continuous with a single-layered pericar- dial wall. It lacks chambers and endocardium.... The innovation of the chambered heart was a key event in vertebrate evolution, because the chambered heart generates one-way blood flow with high pressure, a critical requirement for the efficient blood supply of large-body vertebrates... all extant vertebrates have hearts with two or more chambers (Moorman and Christoffels 2003)" doi:10.1101/gad.1485706
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "branchial heart" NARROW SENSU []
synonym: "chambered heart" EXACT [UBERON:cjm]
synonym: "Herz" RELATED [BTO:0000562]
synonym: "vertebrate heart" EXACT []
xref: AAO:0010210
xref: BILA:0000020
xref: BTO:0000562
xref: EFO:0000815
xref: EHDAA2:0000738
xref: EHDAA:420
xref: EMAPA:16105
xref: EV:0100018
xref: FMA:7088
xref: GAID:174
xref: galen:Heart
xref: MA:0000072
xref: MAT:0000036
xref: MESH:A.07.541
xref: MIAA:0000036
xref: ncithesaurus:Heart
xref: OpenCyc:Mx4rvVjvDpwpEbGdrcN5Y29ycA
xref: SCTID:302509004
xref: TAO:0000114
xref: VHOG:0000276
xref: XAO:0000064
xref: ZFA:0000114
property_value: UBPROP:0000001 "Blood pumping organ composed of four chambers: sinus venosus, atrium, cardiac ventricle and bulbus arteriosus.[TAO]" xsd:string
property_value: UBPROP:0000001 "Part of the circulatory system responsible for pumping blood; composed of three chambers--two atria and one ventricle.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0007100 ! circulatory organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_part UBERON:0004151
intersection_of: UBERON:0007100 ! circulatory organ
intersection_of: has_part UBERON:0004151 ! cardiac chamber
relationship: develops_from UBERON:0004141 ! heart tube
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: has_part UBERON:0004151 ! cardiac chamber
relationship: part_of UBERON:0004535 ! cardiovascular system
[Term]
id: UBERON:0000949
name: endocrine system
def: "Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity." [NLM:endocrine+system, Wikipedia:Endocrine_system]
subset: uberon_slim
subset: vertebrate_core
synonym: "endocrine glandular system" EXACT [EHDAA2:0002224]
synonym: "endocrine system" EXACT []
synonym: "systema endocrinum" EXACT []
xref: AAO:0010279
xref: EFO:0002969
xref: EHDAA2:0002224
xref: EV:0100128
xref: FBbt:00005068
xref: FMA:9668
xref: GAID:439
xref: MA:0000012
xref: MESH:A.06
xref: ncithesaurus:Endocrine_System
xref: SCTID:278876000
xref: TAO:0001158
xref: VHOG:0000098
xref: XAO:0000158
xref: ZFA:0001158
property_value: UBPROP:0000001 "Anatomical system containing glands which regulates bodily functions though the secretion of hormones.[AAO]" xsd:string
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! excretory system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0000950
name: gracilis
def: "The most superficial muscle on the medial side of the thigh. It is thin and flattened, broad above, narrow and tapering below. It arises by a thin aponeurosis from the anterior margins of the lower half of the symphysis pubis and the upper half of the pubic arch." [Wikipedia:Gracilis_muscle]
comment: Editor's note: AAO has minor and major gracilis, which merge together, attaching the pelvic rim to the tibiofibula - this could be grouped with the mammalian gracilis at some level; note the current insertion site is 'tibia' which would be modified for amphibian tibiafibula
subset: uberon_slim
synonym: "gracilis muscle" EXACT [BTO:0000536]
synonym: "musculus gracilis" RELATED LATIN [Wikipedia:Gracilis_muscle]
xref: BTO:0000536
xref: FMA:43882
xref: galen:Gracilis
xref: http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG
xref: MA:0002311
xref: ncithesaurus:Gracilis
xref: OpenCyc:Mx4rv7If8pwpEbGdrcN5Y29ycA
xref: SCTID:181689005
is_a: UBERON:0004252 ! hindlimb stylopod muscle
is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip
relationship: has_muscle_insertion UBERON:0000979 {source="dbpedia", notes="pes anserinus"} ! tibia
relationship: has_muscle_origin UBERON:0001272 {notes="ischiopubic ramus", source="dbpedia"} ! pelvic bone
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0000951
name: rotator muscle
comment: This class was created automatically from a combination of ontologies
xref: FMA:23081
xref: SCTID:244872002
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0000952
name: adductor muscle
comment: obsoleted as it conflated a generic functional grouping with a specific group of muscles in the leg/hip
is_obsolete: true
consider: UBERON:0011144
consider: UBERON:0011145
[Term]
id: UBERON:0000953
name: visceral muscle
def: "involuntary non-striated muscle." [Wikipedia:Smooth_muscle]
comment: terminological note: GO uses visceral and smooth interchangeably
synonym: "adult visceral muscle" RELATED []
synonym: "smooth muscle" EXACT []
is_obsolete: true
[Term]
id: UBERON:0000954
name: intestine muscle
def: "intestinal muscle cell, attach to intestine and body wall anterior to anus" [WB:Paper00000653]
subset: uberon_slim
synonym: "intestinal muscle" EXACT []
xref: BTO:0000643
is_obsolete: true
[Term]
id: UBERON:0000955
name: brain
def: "The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals.[1] Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]." [Wikipedia:Brain]
comment: include synganglion?
subset: major_organ
subset: uberon_slim
subset: vertebrate_core
synonym: "encephalon" RELATED [BTO:0000142]
synonym: "synganglion" RELATED []
xref: AAO:0010478
xref: ABA:Brain
xref: BILA:0000135
xref: BTO:0000142
xref: EFO:0000302
xref: EHDAA2:0000183
xref: EHDAA:2641
xref: EHDAA:6485
xref: EMAPA:16894
xref: EV:0100164
xref: FBbt:00005095
xref: FMA:50801
xref: GAID:571
xref: galen:Brain
xref: MA:0000168
xref: MAT:0000098
xref: MESH:A.08.186.211
xref: MIAA:0000098
xref: ncithesaurus:Brain
xref: NIF_GrossAnatomy:birnlex_796
xref: OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA
xref: SCTID:258335003
xref: TAO:0000008
xref: VHOG:0000157
xref: XAO:0000010
xref: ZFA:0000008
property_value: UBPROP:0000001 "Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system.[TAO]" xsd:string
property_value: UBPROP:0000001 "Part of the central nervous system situated within the cranium and composed of both nerve cell bodies and nerve fibers.[AAO]" xsd:string
is_a: UBERON:0000062 {source="GO"} ! organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0006238 {evidence="definitional"} ! future brain
relationship: part_of UBERON:0001017 {source="FMA"} ! central nervous system
[Term]
id: UBERON:0000956
name: cerebral cortex
def: "The cerebral cortex is a structure within the brain that plays a key role in memory, attention, perceptual awareness, thought, language, and consciousness. It constitutes the outermost layer of the cerebrum. In preserved brains, it has a grey color, hence the name 'grey matter'. Grey matter is formed by neurons and their unmyelinated fibers, whereas the white matter below the grey matter of the cortex is formed predominantly by myelinated axons interconnecting different regions of the central nervous system. The human cerebral cortex is 2–4 mm (0.08–0.16 inches) thick. The surface of the cerebral cortex is folded in large mammals, such that more than two-thirds of the cortical surface is buried in the grooves, called 'sulci. ' The phylogenetically most recent part of the cerebral cortex, the neocortex, also called isocortex, is differentiated into six horizontal layers; the more ancient part of the cerebral cortex, the hippocampus (also called archicortex), has at most three cellular layers, and is divided into subfields. Relative variations in thickness or cell type (among other parameters) allow us to distinguish between different neocortical architectonic fields. The geometry of at least some of these fields seems to be related to the anatomy of the cortical folds, and, for example, layers in the upper part of the cortical ridges seem to be more clearly differentiated than in its deeper parts. [WP,unvetted]." [Wikipedia:Cerebral_cortex]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "brain cortex" RELATED [BTO:0000233]
synonym: "cortex cerebri" RELATED LATIN [Wikipedia:Cerebral_cortex]
synonym: "cortex of cerebral hemisphere" EXACT []
synonym: "pallium of the brain" RELATED [BTO:0000233]
xref: ABA:CTX
xref: BM:Tel-Cx
xref: BTO:0000233
xref: EFO:0000328
xref: EHDAA2:0000234
xref: EHDAA:5464
xref: EMAPA:17544
xref: EV:0100166
xref: FMA:61830
xref: GAID:629
xref: http://upload.wikimedia.org/wikipedia/commons/9/9a/Brainmaps-macaque-hippocampus.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Cerebral_Cortex_location.jpg/200px-Cerebral_Cortex_location.jpg
xref: MA:0000185
xref: MAT:0000108
xref: MESH:A.08.186.211.730.885.213
xref: MIAA:0000108
xref: ncithesaurus:Cortex
xref: NIF_GrossAnatomy:birnlex_1494
xref: SCTID:362880003
xref: VHOG:0000722
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: has_developmental_contribution_from UBERON:0004035 ! subplate
relationship: has_developmental_contribution_from UBERON:0005343 ! cortical plate
relationship: part_of UBERON:0000203 {source="ISBN10:0471888893", source="GO"} ! pallium
relationship: part_of UBERON:0001869 ! cerebral hemisphere
[Term]
id: UBERON:0000957
name: lamina
def: "Any thin layer or plate." [Wikipedia:Lamina_of_the_vertebral_arch]
comment: TODO - merge with cell layer?
subset: uberon_slim
xref: http://upload.wikimedia.org/wikipedia/commons/8/80/Laminaarcusvertebrae.png
is_a: UBERON:0000479 ! tissue
[Term]
id: UBERON:0000958
name: medulla
def: "Middle part of an organ (as opposed to the cortex)[WP]." [Wikipedia:Bone_marrow_of_ovary]
comment: This class is used in a very general sense
subset: uberon_slim
xref: BM:Me
xref: FMA:61108
xref: galen:Medulla
is_a: UBERON:0000471 ! compound organ component
relationship: surrounded_by UBERON:0001851 ! cortex
[Term]
id: UBERON:0000959
name: optic chiasma
def: "Nerve trunk which is continuous with right and left optic nerves and right and left optic tracts.[FMA]" [FMA:FMA, Wikipedia:Optic_chiasm, ZFIN:curator]
subset: uberon_slim
subset: vertebrate_core
synonym: "chiasma opticum" EXACT LATIN [Wikipedia:Optic_chiasm]
synonym: "chiasma opticum" EXACT [FMA:62045, FMA:TA]
synonym: "decussation of optic nerve fibers" EXACT []
synonym: "optic chiasm" EXACT [Wikipedia:Optic_chiasm]
xref: AAO:0010622
xref: BM:Tel-OCX
xref: EHDAA2:0001302
xref: EHDAA:10227
xref: EMAPA:17603
xref: FMA:62045
xref: GAID:832
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/1543%2CVisalius%27OpticChiasma.jpg/200px-1543%2CVisalius%27OpticChiasma.jpg
xref: MA:0001098
xref: MESH:A.08.800.800.120.680.600
xref: ncithesaurus:Optic_Chiasm
xref: NIF_GrossAnatomy:birnlex_1416
xref: SCTID:244453006
xref: TAO:0000556
xref: VHOG:0000190
xref: XAO:0004071
xref: ZFA:0000556
property_value: UBPROP:0000001 "The point at which fibers of the optic nerves cross.[AAO]" xsd:string
is_a: UBERON:0002464 ! nerve trunk
relationship: continuous_with UBERON:0000941 ! cranial nerve II
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0000960
name: pharyngeal nerve
def: "OBSOLETE. Original definition: The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube. [WP,unvetted]." [Wikipedia:Pharyngeal_nerve]
subset: uberon_slim
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray780.png/200px-Gray780.png
is_obsolete: true
[Term]
id: UBERON:0000961
name: thoracic ganglion
def: "The thoracic ganglia are paravertebral ganglia. The thoracic portion of the sympathetic trunk typically has 12 thoracic ganglia. Emerging from the ganglia are thoracic splancic nerves (the cardiopulmonary, the greater, lesser, and least splanchic nerves) that help provide sympathetic innervation to abdominal structures. Also, the ganglia of the thoracic sympathetic trunk have both white and gray rami communicantes. The white rami carry sympathetic fibers arising in the spinal cord into the sympathetic trunk. [WP,unvetted]." [Wikipedia:Thoracic_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ganglion of thorax" EXACT [OBOL:automatic]
synonym: "ganglion thoracicum splanchnicum" EXACT [FMA:6471, FMA:TA]
synonym: "thoracic paravertebral ganglion" EXACT []
synonym: "thoracic splanchnic ganglion" EXACT []
synonym: "thoracic sympathetic ganglion" EXACT []
synonym: "thorax ganglion" EXACT [OBOL:automatic]
xref: BTO:0001831
xref: EHDAA:4664
xref: EMAPA:17158
xref: FMA:6471
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray849.png/200px-Gray849.png
xref: MA:0001159
xref: ncithesaurus:Thoracic_Ganglion
xref: RETIRED_EHDAA2:0002012
xref: SCTID:181102004
xref: VHOG:0000515
is_a: UBERON:0001807 ! paravertebral ganglion
[Term]
id: UBERON:0000962
name: cervical nerve
def: "The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. ) Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]." [Wikipedia:Cervical_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cervical nerve tree" EXACT []
synonym: "cervical spinal nerve" EXACT []
xref: FMA:5859
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray795.png/200px-Gray795.png
xref: ncithesaurus:Cervical_Nerve
xref: NIF_GrossAnatomy:nlx_anat_20090207
xref: SCTID:360497008
is_a: UBERON:0001780 ! spinal nerve
is_a: UBERON:0003439 ! trunk nerve
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000961 ! thoracic ganglion
[Term]
id: UBERON:0000963
name: head sensillum
comment: This class was created automatically from a combination of ontologies
xref: FBbt:00004114
xref: MAT:0000204
xref: MIAA:0000204
is_a: UBERON:0002536 ! arthropod sensillum
[Term]
id: UBERON:0000964
name: cornea
def: "transparent front part of the eye that covers the iris, pupil, and anterior chamber. Together with the lens, the cornea refracts light, accounting for approximately two-thirds of the eye's total optical power." [Wikipedia:Cornea]
subset: uberon_slim
subset: vertebrate_core
synonym: "tunica cornea" RELATED []
xref: AAO:0010344
xref: BTO:0000286
xref: EFO:0000377
xref: EHDAA2:0000316
xref: EHDAA:10199
xref: EMAPA:17161
xref: EV:0100341
xref: FMA:58238
xref: GAID:892
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0000266
xref: MESH:A.09.371.060.217
xref: ncithesaurus:Cornea
xref: OpenCyc:Mx4rvViBa5wpEbGdrcN5Y29ycA
xref: SCTID:181162001
xref: TAO:0000640
xref: VHOG:0000164
xref: XAO:0000180
xref: ZFA:0000640
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: continuous_with UBERON:0001773 ! sclera
relationship: develops_from UBERON:0004348 {evidence="definitional"} ! optic eminence
relationship: develops_from UBERON:0005427 ! corneal primordium
relationship: induced_by UBERON:0005426 ! lens vesicle
relationship: part_of UBERON:0001801 {source="MA"} ! anterior segment of eyeball
relationship: part_of UBERON:0010409 {source="MA"} ! eye surface
[Term]
id: UBERON:0000965
name: lens of camera-type eye
def: "Transparent part of camera-type eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)]
comment: Taxon notes: This class excludes compound eye corneal lenses.
subset: uberon_slim
subset: vertebrate_core
synonym: "camera-type eye lens" EXACT [GO:0002088]
synonym: "crystalline lens" RELATED [BTO:0000723]
synonym: "eye lens" EXACT SENSU []
synonym: "lens" EXACT SENSU []
synonym: "lens crystallina" EXACT [Wikipedia:Lens_%28anatomy%29]
synonym: "ocular lens" RELATED [BTO:0000723]
xref: AAO:0010348
xref: BTO:0000723
xref: EHDAA:9057
xref: EMAPA:17838
xref: EV:0100343
xref: FMA:58241
xref: MA:0000275
xref: MAT:0000141
xref: MESH:A.09.371.509
xref: MIAA:0000141
xref: ncithesaurus:Crystalline_Lens
xref: OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0000975
xref: SCTID:181169005
xref: TAO:0000035
xref: VHOG:0000169
xref: XAO:0000008
xref: ZFA:0000035
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005389 ! transparent eye structure
relationship: develops_from UBERON:0003073 ! lens placode
relationship: develops_from UBERON:0005426 ! lens vesicle
relationship: induced_by UBERON:0003902 ! retinal neural layer
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
[Term]
id: UBERON:0000966
name: retina
def: "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator]
comment: Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Us the parent class photoreceptor array / light-sensitive tissue for arthropods
subset: uberon_slim
subset: vertebrate_core
synonym: "inner layer of eyeball" EXACT []
synonym: "Netzhaut" RELATED [BTO:0001175]
synonym: "tunica interna of eyeball" EXACT []
xref: AAO:0010352
xref: BTO:0001175
xref: EFO:0000832
xref: EHDAA2:0001627
xref: EHDAA:4757
xref: EMAPA:17168
xref: EV:0100348
xref: FMA:58301
xref: GAID:755
xref: http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Human_eye_cross-sectional_view_grayscale.png/200px-Human_eye_cross-sectional_view_grayscale.png
xref: MA:0000276
xref: MAT:0000142
xref: MESH:A.09.371.729
xref: MIAA:0000142
xref: ncithesaurus:Retina
xref: NIF_GrossAnatomy:birnlex_1153
xref: NIF_GrossAnatomy:birnlex_1156
xref: OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA
xref: SCTID:181171005
xref: TAO:0000152
xref: VHOG:0000229
xref: XAO:0000009
xref: ZFA:0000152
property_value: RO:0002161 NCBITaxon:6656
property_value: UBPROP:0000001 "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005388 ! photoreceptor array
relationship: develops_from UBERON:0003072 {source="EHDAA2"} ! optic cup
relationship: part_of UBERON:0001802 ! posterior segment of eyeball
[Term]
id: UBERON:0000967
name: adult thoracic sensillum
synonym: "arthropod sensillum of thorax" EXACT [OBOL:automatic]
synonym: "sensillum of thorax" EXACT [OBOL:automatic]
synonym: "thoracic sensillum" EXACT []
synonym: "thorax arthropod sensillum" EXACT [OBOL:automatic]
synonym: "thorax sensillum" EXACT [OBOL:automatic]
is_obsolete: true
[Term]
id: UBERON:0000968
name: adult abdominal sensillum
synonym: "abdomen arthropod sensillum" EXACT [OBOL:automatic]
synonym: "abdomen sensillum" EXACT [OBOL:automatic]
synonym: "abdominal sensillum" EXACT []
synonym: "arthropod sensillum of abdomen" EXACT [OBOL:automatic]
synonym: "sensillum of abdomen" EXACT [OBOL:automatic]
is_obsolete: true
[Term]
id: UBERON:0000969
name: joint connecting hardened body parts
is_obsolete: true
[Term]
id: UBERON:0000970
name: eye
def: "An organ that detects light." [http://en.wikipedia.org/wiki/Eye, UBERON:cjm, Wikipedia:Eye]
comment: Usage notes: This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each). Structure notes: Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva,
subset: functional_classification
subset: major_organ
subset: organ_slim
subset: uberon_slim
synonym: "light-detecting organ" RELATED []
synonym: "photoreceptor" BROAD []
synonym: "visual apparatus" RELATED [EV:0100336]
xref: BILA:0000017
xref: BTO:0000439
xref: EFO:0000827
xref: EV:0100336
xref: FBbt:00005162
xref: GAID:69
xref: MAT:0000140
xref: MESH:A.01.456.505.420
xref: MIAA:0000140
xref: OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0002104 ! visual system
[Term]
id: UBERON:0000971
name: ommatidium
def: "One of the small facets of the compound eye." [ISBN:3110148986, Wikipedia:Ommatidium]
subset: uberon_slim
synonym: "omatidium" EXACT []
xref: BTO:0001922
xref: FBbt:00004510
xref: HAO:0000666
xref: MAT:0000143
xref: MIAA:0000143
is_a: UBERON:0002536 ! arthropod sensillum
relationship: part_of UBERON:0000018 ! compound eye
[Term]
id: UBERON:0000972
name: antenna
def: "The paired, usually multiple jointed, sensory organs articulating on the procephalic region of the head capsule; its highly versatile sensory structures are capable to detect the various environmental stimuli. In the context of Drosophila refers to they are the most anterior segmented sensory appendage of the head." [FB:gg, ISBN:3110148986, Wikipedia:Antenna_(biology)]
comment: Editor notes: this term should be ceded to the arthropod anatomy ontology
subset: uberon_slim
synonym: "feeler" RELATED [BTO:0000074]
xref: AEO:0000198
xref: BTO:0000074
xref: EFO:0000874
xref: FBbt:00004511
xref: HAO:0000101
xref: MAT:0000086
xref: MIAA:0000086
xref: OpenCyc:Mx4rvVjSAZwpEbGdrcN5Y29ycA
xref: TGMA:0000007
is_a: UBERON:0000026 ! appendage
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0000973
name: labrum
is_obsolete: true
[Term]
id: UBERON:0000974
name: neck
def: "Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]." [Wikipedia:Neck]
comment: Usage notes: true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck.
subset: uberon_slim
synonym: "collum" RELATED LATIN [Wikipedia:Neck]
xref: AEO:0000108
xref: BTO:0000420
xref: EFO:0000967
xref: EHDAA2:0003108
xref: FMA:7155
xref: GAID:86
xref: galen:Neck
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Female_neck.jpg/200px-Female_neck.jpg
xref: MA:0000024
xref: MAT:0000297
xref: MESH:A.01.598
xref: MIAA:0000297
xref: ncithesaurus:Neck
xref: OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA
xref: SCTID:302550007
property_value: "dubious_for_taxon" NCBITaxon:32443
is_a: UBERON:0000475 ! organism subdivision
relationship: anteriorly_connected_to UBERON:0000033 ! head
relationship: part_of UBERON:0000153 ! anterior region of body
relationship: part_of UBERON:0007811 ! craniocervical region
relationship: posteriorly_connected_to UBERON:0002100 ! trunk
[Term]
id: UBERON:0000975
name: sternum
def: "Endochondral midventral skeletal structure that arises within ventral connective tissue septum and adjacent myospta." [ISBN10:0073040584, Wikipedia:Sternum]
comment: Editor note: in EMAPA and EHDAA2 this is part of the skeleton of pectoral girdle; the classic def of pectoral girdle (see WP) excludes the rib cage and sternum. Taxon notes: It probably first evolved in early tetrapods as an extension of the pectoral girdle; it is not found in fish. In amphibians and reptiles it is typically a shield-shaped structure, often composed entirely of cartilage. It is absent in both turtles and snakes. In birds it is a relatively large bone and typically bears an enormous projecting keel to which the flight muscles are attached. Only in mammals does the sternum take on the elongated, segmented form seen in humans. In some mammals, such as opossums, the individual segments never fuse and remain separated by cartilagenous plates throughout life[WP]
subset: uberon_slim
synonym: "breastbone" RELATED [BTO:0001302]
synonym: "vertebrate sternum" EXACT []
xref: AAO:0000765
xref: BTO:0001302
xref: EHDAA2:0001914
xref: EHDAA:9561
xref: EMAPA:18344
xref: FMA:7485
xref: GAID:246
xref: galen:Sternum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/12/Illu_thoracic_cage.jpg/200px-Illu_thoracic_cage.jpg
xref: MA:0001331
xref: MESH:A.02.835.232.904.766
xref: ncithesaurus:Sternum
xref: OpenCyc:Mx4rvVjO6JwpEbGdrcN5Y29ycA
xref: SCTID:302522007
xref: VHOG:0000856
property_value: RO:0002161 NCBITaxon:8570
property_value: UBPROP:0000001 "Single element that constitutes the postzonal area of the pectoral girdle.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of postzonal element (AAO:0000938)[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005181 ! thoracic segment organ
is_a: UBERON:0010363 {source="Kardong"} ! endochondral element
relationship: connected_to UBERON:0002228 ! rib
relationship: connected_to UBERON:0007831 ! skeleton of pectoral girdle
relationship: connected_to UBERON:0008255 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! right clavicle
relationship: connected_to UBERON:0008256 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! left clavicle
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0003252 {source="FMA"} ! rib cage
[Term]
id: UBERON:0000976
name: humerus
def: "Paired long bones of endochondral origin that extend from the pectoral girdle to the elbows[AAO, modified]." [AAO:0000679, Wikipedia:Humerus]
comment: homologous to proximal metapterygial mesomere [Hall 2007]
subset: uberon_slim
xref: AAO:0000679
xref: EFO:0001398
xref: EMAPA:18468
xref: EMAPA:19106
xref: FMA:13303
xref: GAID:183
xref: galen:Humerus
xref: http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extremity.jpg/200px-Illu_upper_extremity.jpg
xref: MA:0001356
xref: MESH:A.02.835.232.087.412
xref: ncithesaurus:Humerus
xref: SCTID:181923006
xref: VHOG:0001158
xref: XAO:0003210
property_value: UBPROP:0000001 "Paired, elongate, cylindrical bones of endochondral origin that extend from the pectoral girdle to the elbows.[AAO]" xsd:string
is_a: UBERON:0003607 ! forelimb long bone
is_a: UBERON:0004250 ! upper arm bone
relationship: develops_from UBERON:0006245 {evidence="definitional"} ! humerus cartilage condensation
relationship: part_of UBERON:0001440 {source="FMA"} ! forelimb skeleton
relationship: part_of UBERON:0003822 {source="FMA"} ! forelimb stylopod
relationship: proximally_connected_to UBERON:0007831 ! skeleton of pectoral girdle
[Term]
id: UBERON:0000977
name: pleura
def: "The delicate serous membrane that lines each half of the thorax of mammals and is folded back over the surface of the lung of the same side[BTO]." [Wikipedia:Pleura]
comment: In mouse, is_a cavity lining. In FMA, is_a (viscous) serous membrane
subset: uberon_slim
synonym: "pleura" RELATED []
synonym: "pleural tissue" RELATED [BTO:0001791]
synonym: "wall of pleural sac" EXACT []
xref: BTO:0001791
xref: EFO:0001980
xref: EV:0100044
xref: FMA:9583
xref: GAID:360
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Gray965.png/200px-Gray965.png
xref: MA:0000433
xref: MESH:A.04.716
xref: ncithesaurus:Pleural_Tissue
xref: OpenCyc:Mx4rv3zwLZwpEbGdrcN5Y29ycA
xref: SCTID:181609007
xref: VHOG:0000394
is_a: UBERON:0000042 {source="MESH"} ! serous membrane
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
relationship: part_of UBERON:0009778
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0009778 ! pleural sac
relationship: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0009778 ! pleural sac
relationship: part_of UBERON:0009778 {source="FMA"} ! pleural sac
relationship: surrounds UBERON:0002402 ! pleural cavity
[Term]
id: UBERON:0000978
name: leg
def: "The portion of the hindlimb that contains both the stylopod and zeugopod." [Wikipedia:Leg#Limb]
comment: The term leg can mean: [1] an appendage on which an animal walks [2] the entire hindlimb of a tetrapod [3] the segment of a human leg between knee and ankle (cf FMA) [4] the region of a hindlimb include the stylopod and zeugopod, but excluding the autopod. We define this class as [4], and thus 'leg' is compltely analagous to 'arm'. For [1], see the class 'locomotive weight-bearing appendage'. For [2] we use 'hindlimb'. For [3] we use the less open to misinterpretation 'hindlimb zeugopod'. Editor note: currently declared as overlapping foot, as AOs disagree over whether some ankle parts are in the leg or foot
subset: uberon_slim
synonym: "lower extremity" RELATED [MESH:A.01.378.610]
synonym: "tetrapod leg" EXACT []
xref: BTO:0000721
xref: EFO:0001411
xref: EHDAA2:0000972
xref: EHDAA:5151
xref: EHDAA:6176
xref: EHDAA:8289
xref: EMAPA:17489
xref: GAID:49
xref: MA:0000047
xref: MESH:A.01.378.610
xref: OpenCyc:Mx4rvViYzZwpEbGdrcN5Y29ycA
xref: VHOG:0000345
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006058 ! multi-limb segment region
relationship: distally_connected_to UBERON:0002387 ! foot
relationship: part_of UBERON:0002103 ! hindlimb
relationship: proximally_connected_to UBERON:0001464 ! hip
[Term]
id: UBERON:0000979
name: tibia
def: "Larger and stronger of the two bones in the leg below the knee in vertebrates and connects the knee with the ankle bones." [Wikipedia:Tibia]
comment: Does not include the tibia segment of the arthropod leg FBbt:00004642
subset: uberon_slim
synonym: "shankbone" EXACT [Wikipedia:Tibia]
synonym: "shinbone" EXACT [Wikipedia:Tibia]
xref: AAO:0000890
xref: BTO:0001252
xref: EFO:0003054
xref: EMAPA:18513
xref: EMAPA:19142
xref: FMA:24476
xref: GAID:204
xref: galen:Tibia
xref: http://upload.wikimedia.org/wikipedia/commons/2/2a/Gray260.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray260.png/200px-Gray260.png
xref: MA:0001361
xref: MESH:A.02.835.232.500.883
xref: ncithesaurus:Tibia
xref: OpenCyc:Mx4rvtq3-ZwpEbGdrcN5Y29ycA
xref: SCTID:182061009
property_value: UBPROP:0000001 "One of the two long bones of endochondral origin of the hind-epipodium; it is a straight, simple bone whose section is more or less rectangular at the ends and circular at its central portion.[AAO]" xsd:string
is_a: UBERON:0003608 ! hindlimb long bone
is_a: UBERON:0004251 ! lower leg bone
relationship: develops_from UBERON:0010849 ! tibia cartilaginous condensation
relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton
[Term]
id: UBERON:0000980
name: trochanter
def: "bony prominences near the upper extremity of the femur; there are two in human (greater and lesser trochanters) and three in many other mammalian species (greater, lesser and third); these normally serve as attachment points for hip and thigh muscles[MP]" [Wikipedia:Trochanter]
subset: uberon_slim
synonym: "femoral trochanter" EXACT [AAO:0000897]
synonym: "trochanter of femur" EXACT []
xref: AAO:0000897
xref: FMA:82513
xref: MA:0002821
xref: ncithesaurus:Trochanter
xref: SCTID:182047004
property_value: UBPROP:0000001 "Process on the ventral surface of the shaft of the femur.[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0000981 {source="MA"} ! femur
[Term]
id: UBERON:0000981
name: femur
def: "The femur, or thigh bone, is the most proximal (closest to the body) bone of the leg in vertebrates capable of walking or jumping, such as most land mammals, birds, many reptiles such as lizards, and amphibians such as frogs. In vertebrates with four legs, the femur is found only in the rear legs. Some species of whales[1], snakes[2], and other non-walking vertebrates have vestigial femurs. One of the earliest known vertebrates to have a femur is the Eusthenopteron, a prehistoric lobe-finned fish from the Late Devonian period." [Wikipedia:Femur]
comment: homologous to proximal metapterygial mesomere [Hall 2007].
subset: uberon_slim
synonym: "femoral bone" RELATED [BTO:0001284]
synonym: "os femorale" RELATED [BTO:0001284]
synonym: "os femoris" RELATED [BTO:0001284]
synonym: "os femoris, os longissimum" RELATED LATIN [Wikipedia:Femur]
synonym: "thigh bone" EXACT []
xref: AAO:0000889
xref: BTO:0001284
xref: EFO:0001396
xref: EMAPA:18514
xref: EMAPA:19143
xref: FMA:9611
xref: GAID:199
xref: galen:Femur
xref: http://upload.wikimedia.org/wikipedia/commons/7/73/Gray252.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray252.png/200px-Gray252.png
xref: MA:0001359
xref: MESH:A.02.835.232.500.247
xref: ncithesaurus:Femur
xref: OpenCyc:Mx4rvVjOJJwpEbGdrcN5Y29ycA
xref: SCTID:182046008
xref: VHOG:0001159
xref: VSAO:0000186
xref: XAO:0003214
property_value: UBPROP:0000001 "Endochondral longbone connecting the pelvic girdle with posterior zeugopodium.[VSAO]" xsd:string
property_value: UBPROP:0000001 "Paired, elongate, cylindrical bones of endochondral origin that form the thighs, extending from the pelvic girdles to the knees.[AAO]" xsd:string
is_a: UBERON:0003608 ! hindlimb long bone
is_a: UBERON:0003826 ! upper leg bone
is_a: UBERON:0008202 {source="MA"} ! bone of hip region
relationship: connected_to UBERON:0000979 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! tibia
relationship: connected_to UBERON:0001272 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! pelvic bone
relationship: connected_to UBERON:0002446 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! patella
relationship: develops_from UBERON:0010129 {evidence="definitional"} ! femur cartilage condensation
relationship: part_of UBERON:0000376 {source="FMA"} ! hindlimb stylopod
relationship: part_of UBERON:0001441 {source="FMA"} ! hindlimb skeleton
relationship: proximally_connected_to UBERON:0007832 ! skeleton of pelvic girdle
[Term]
id: UBERON:0000982
name: skeletal joint
def: "Anatomical cluster that consists of two or more adjacent skeletal structures, which may be interconnected by various types of tissue[VSAO]." [VSAO:0000101, Wikipedia:Joint]
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "articular joint" RELATED [BTO:0001686]
synonym: "articulation" BROAD [VSAO:0000101]
synonym: "joint" BROAD [FMA:7490, VSAO:0000101]
xref: AEO:0000182
xref: BTO:0001686
xref: EFO:0000948
xref: EMAPA:19204
xref: FMA:7490
xref: GAID:102
xref: galen:Joint
xref: MA:0000319
xref: MAT:0000188
xref: MESH:A.02.835.583
xref: MIAA:0000188
xref: ncithesaurus:Joint
xref: OpenCyc:Mx4rvVjjdpwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0003182
xref: SCTID:302536002
xref: TAO:0000367
xref: VHOG:0001276
xref: VSAO:0000101
xref: XAO:0000171
xref: ZFA:0001596
property_value: UBPROP:0000001 "Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[TAO]" xsd:string
is_a: UBERON:0004905 ! articulation
union_of: UBERON:0002217 ! synovial joint
union_of: UBERON:0011134 ! nonsynovial joint
disjoint_from: UBERON:0001474 ! bone
relationship: connects UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0004770 ! articular system
[Term]
id: UBERON:0000983
name: metatarsus region
comment: Note that mammalian and non-mammalian AOs differ in whether they consider this a part of the skeleton
subset: uberon_slim
synonym: "hind metapodium" EXACT [AAO:0000221, http://en.wiktionary.org/wiki/metapodial, MA:th]
synonym: "metatarsal part of foot" EXACT [FMA:24997]
synonym: "metatarsal region" EXACT [FMA:24997]
synonym: "metatarsus" RELATED LATIN [Wikipedia:Metatarsus]
synonym: "ossa metatarsalia" RELATED LATIN [Wikipedia:Metatarsus]
synonym: "regio metatarsalis" EXACT [FMA:24997, FMA:TA]
xref: FMA:24997
xref: MA:0000049
xref: SCTID:280711000
is_a: UBERON:0008784 ! lower limb segment
is_a: UBERON:0009877 ! metapodium region
relationship: part_of UBERON:0002387
intersection_of: UBERON:0009877 ! metapodium region
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0000984
name: imaginal disc-derived wing
def: "A flight organ of the adult external thorax that is derived from a dorsal mesothoracic disc." [FB:gg]
comment: TODO: review. hymenoptera thorax = fusion of thorax and mesosoma/metasoma
subset: uberon_slim
synonym: "adult mesothoracic wing" RELATED []
synonym: "adult metathoracic wing" RELATED []
synonym: "thoracic wing" RELATED []
synonym: "thorax wing" RELATED [OBOL:automatic]
synonym: "wing" BROAD SENSU [FBbt:00004729]
synonym: "wing of thorax" RELATED [OBOL:automatic]
xref: FBbt:00004729
xref: HAO:0001089
xref: TGMA:0000196
is_a: UBERON:0000023 ! wing
relationship: develops_from UBERON:0000939
intersection_of: UBERON:0000023 ! wing
intersection_of: develops_from UBERON:0000939 ! imaginal disc
relationship: develops_from UBERON:0000939 ! imaginal disc
[Term]
id: UBERON:0000985
name: axillary vein
def: "In human anatomy, the axillary vein is a large blood vessel that conveys blood from the lateral aspect of the thorax, axilla (armpit) and upper limb toward the heart. There is one axillary vein on each side of the body. Its origin is at the lower margin of the teres major muscle and a continuation of the brachial vein. Its tributaries include the basilic vein and cephalic vein, which are both superficial veins. It terminates at the lateral margin of the first rib, at which it becomes the subclavian vein. It is accompanied along its course by a similarly named artery, the axillary artery. [WP,unvetted]." [Wikipedia:Axillary_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "subcostal vein" RELATED []
synonym: "vena axillaris" RELATED LATIN [Wikipedia:Axillary_vein]
xref: EMAPA:18758
xref: FMA:13329
xref: GAID:527
xref: galen:AxillaryVein
xref: http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png
xref: MA:0002084
xref: MESH:A.07.231.908.077
xref: ncithesaurus:Axillary_Vein
xref: OpenCyc:Mx4rwLSHK5wpEbGdrcN5Y29ycA
xref: SCTID:181389002
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003233 ! epithelium of shoulder
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0000987
name: haltere
def: "The capitate stalk on both sides of the thorax having developed from the dorsal metathoracic wing-buds, it is freely movable and capable of vibration, representing the hind wing of Diptera; used for flight balance." [FB:gg, ISBN:3110148986, Wikipedia:Haltere]
comment: Editor notes: this term should be ceded to the arthropod anatomy ontology
subset: uberon_slim
synonym: "balancer organ" RELATED []
xref: EFO:0000886
xref: FBbt:00004783
xref: MAT:0000203
xref: MIAA:0000203
xref: OpenCyc:Mx4rwL1JcJwpEbGdrcN5Y29ycA
is_a: UBERON:0000026 ! appendage
relationship: develops_from UBERON:0000939 ! imaginal disc
relationship: part_of UBERON:0000914 ! organismal segment
[Term]
id: UBERON:0000988
name: pons
def: "Brainstrem structure that has as its parts the pontine tegmentum and basal part of pons[FMA]." [FMA:67943, Wikipedia:Pons]
comment: The pons is not present in zebrafish. In this ontology we currently have some structures which are applicable to zebrafish appearing as parts of the pons. Currently we only include the weaker dubious_for_taxon relationship ubtil this is resolved
subset: uberon_slim
synonym: "pons of Varolius" EXACT []
synonym: "pons Varolii" EXACT [ncithesaurus:Pons_Varolii]
xref: ABA:P
xref: BM:Pons
xref: BTO:0001101
xref: EFO:0001394
xref: EHDAA2:0004394
xref: EMAPA:17563
xref: EV:0100253
xref: FMA:67943
xref: GAID:578
xref: http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Gray768.png/200px-Gray768.png
xref: MA:0000204
xref: MAT:0000115
xref: MESH:A.08.186.211.132.810.428.600
xref: MIAA:0000115
xref: ncithesaurus:Pons_Varolii
xref: NIF_GrossAnatomy:birnlex_733
xref: SCTID:279103004
xref: VHOG:0001176
property_value: "dubious_for_taxon" NCBITaxon:7955
property_value: "spatially_disjoint_from" UBERON:0001896
is_a: UBERON:0002680 ! regional part of metencephalon
relationship: part_of UBERON:0001895 ! metencephalon
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0000989
name: penis
def: "The penis (plural penises, penes) is an external sexual organ of certain biologically male organisms, in both vertebrates and invertebrates. The penis is a reproductive organ, technically an intromittent organ, and for placental mammals, additionally serves as the external organ of urination. The penis is generally found on mammals and reptiles. [WP,unvetted]." [Wikipedia:Penis]
comment: Most male birds (e.g., roosters and turkeys) have a cloaca (also present on the female), but not a penis. Among bird species with a penis are paleognathes (tinamous and ratites), Anatidae (ducks, geese and swans), and a very few other species (such as flamingoes). A bird penis is different in structure from mammal penises, being an erectile expansion of the cloacal wall and being erected by lymph, not blood. It is usually partially feathered and in some species features spines and brush-like filaments, and in flaccid state curls up inside the cloaca[WP]
subset: organ_slim
subset: uberon_slim
synonym: "phallus" RELATED []
xref: BTO:0000405
xref: EFO:0000987
xref: EHDAA2:0001433
xref: EHDAA:9380
xref: EMAPA:18682
xref: EMAPA:18996
xref: EV:0100107
xref: FMA:9707
xref: GAID:389
xref: galen:Penis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Labelled_flaccid_penis.jpg/200px-Labelled_flaccid_penis.jpg
xref: MA:0000408
xref: MAT:0000186
xref: MESH:A.05.360.444.492
xref: MIAA:0000186
xref: ncithesaurus:Penis
xref: OpenCyc:Mx4rvVjkCZwpEbGdrcN5Y29ycA
xref: SCTID:265793009
xref: VHOG:0000727
is_a: UBERON:0008811 {source="Wikipedia"} ! intromittent organ
relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital ridge
relationship: develops_from UBERON:0005876 {source="EHDAA2"} ! undifferentiated genital tubercle
[Term]
id: UBERON:0000990
name: reproductive system
def: "Anatomical system that has as its parts the organs concerned with reproduction." [Wikipedia:Reproductive_system]
comment: This class was created automatically from a combination of ontologies
subset: functional_classification
subset: uberon_slim
subset: vertebrate_core
synonym: "animal reproductive system" RELATED [BTO:0000081]
synonym: "genital system" RELATED []
synonym: "genitalia" RELATED PLURAL []
synonym: "Geschlechtsorgan" RELATED [BTO:0000081]
synonym: "organa genitalia" RELATED [BTO:0000081]
synonym: "reproductive tissue" RELATED [BTO:0000081]
synonym: "systemata genitalia" RELATED LATIN [Wikipedia:Reproductive_system]
xref: AAO:0010258
xref: BILA:0000103
xref: BTO:0000081
xref: EFO:0000809
xref: EHDAA2:0001603
xref: EHDAA:5923
xref: EMAPA:17381
xref: EV:0100100
xref: FBbt:00004826
xref: FBbt:00004857
xref: FMA:7160
xref: GAID:363
xref: HAO:0000374
xref: HAO:0000895
xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Penis.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Penis.svg/200px-Penis.svg.png
xref: MA:0000326
xref: MIAA:0000305
xref: ncithesaurus:Reproductive_System
xref: OpenCyc:Mx4rvVja4ZwpEbGdrcN5Y29ycA
xref: SCTID:278875001
xref: TAO:0000632
xref: VHOG:0000182
xref: WBbt:0005747
xref: XAO:0000142
xref: ZFA:0000632
property_value: UBPROP:0000001 "Anatomical system which consists of organs and tissues associated with sexual reproduction of the organism.[AAO]" xsd:string
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004120 ! mesoderm-derived structure
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! excretory system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0000991
name: gonad
def: "Reproductive organ that produces and releases eggs (ovary) or sperm (testis)." [ISBN:0140512888, Wikipedia:Gonad, ZFA:0000413, ZFIN:curator]
comment: FMA xref is a 'general anatomical term'
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "gonada" EXACT []
xref: AAO:0000213
xref: BILA:0000123
xref: BTO:0000534
xref: EMAPA:16857
xref: EMAPA:17383
xref: FBbt:00004858
xref: FMA:18250
xref: GAID:368
xref: HAO:0000379
xref: MA:0002420
xref: MESH:A.05.360.576
xref: ncithesaurus:Gonad
xref: OpenCyc:Mx4rwQvdiZwpEbGdrcN5Y29ycA
xref: SCTID:304623008
xref: TAO:0000413
xref: VHOG:0000397
xref: WBbt:0005175
xref: XAO:0003146
xref: ZFA:0000413
property_value: UBPROP:0000001 "Anatomical structure which produces gametes as well as certain sex hormones controlled by the pituitary gonadotropins.[AAO]" xsd:string
property_value: UBPROP:0000001 "The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis).[TAO]" xsd:string
is_a: UBERON:0003133 ! reproductive organ
relationship: develops_from UBERON:0005564 ! gonad primordium
relationship: part_of UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0000992
name: female gonad
def: "Ovum-producing female reproductive organ." [Wikipedia:Ovary]
comment: Ovaries of some kind are found in the female reproductive system of many animals that employ sexual reproduction, including invertebrates. However, they develop in a very different way in most invertebrates than they do in vertebrates, and are not truly homologous. Many of the features found in human ovaries are common to all vertebrates, including the presence of follicular cells, tunica albuginea, and so on. However, many species produce a far greater number of eggs during their lifetime than do humans, so that, in fish and amphibians, there may be hundreds, or even millions of fertile eggs present in the ovary at any given time. In these species, fresh eggs may be developing from the germinal epithelium throughout life. Corpora lutea are found only in mammals, and in some elasmobranch fish; in other species, the remnants of the follicle are quickly resorbed by the ovary. In birds, reptiles, and monotremes, the egg is relatively large, filling the follicle, and distorting the shape of the ovary at maturity. Amphibians and reptiles have no ovarian medulla; the central part of the ovary is a hollow, lymph-filled space. The ovary of teleosts is also often hollow, but in this case, the eggs are shed into the cavity, which opens into the oviduct. Although most normal female vertebrates have two ovaries, this is not the case in all species. In birds and platypuses, the right ovary never matures, so that only the left is functional. In some elasmobranchs, the reverse is true, with only the right ovary fully developing. In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo[WP].
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "female organism genitalia gonad" EXACT [OBOL:automatic]
synonym: "female organism genitalia gonada" EXACT [OBOL:automatic]
synonym: "female organism reproductive system gonad" EXACT [OBOL:automatic]
synonym: "female organism reproductive system gonada" EXACT [OBOL:automatic]
synonym: "female reproductive system gonad" EXACT [OBOL:automatic]
synonym: "female reproductive system gonada" EXACT [OBOL:automatic]
synonym: "genitalia of female organism gonad" EXACT [OBOL:automatic]
synonym: "genitalia of female organism gonada" EXACT [OBOL:automatic]
synonym: "gonad of female organism genitalia" EXACT [OBOL:automatic]
synonym: "gonad of female organism reproductive system" EXACT [OBOL:automatic]
synonym: "gonad of female reproductive system" EXACT [OBOL:automatic]
synonym: "gonad of genitalia of female organism" EXACT [OBOL:automatic]
synonym: "gonad of reproductive system of female organism" EXACT [OBOL:automatic]
synonym: "gonada of female organism genitalia" EXACT [OBOL:automatic]
synonym: "gonada of female organism reproductive system" EXACT [OBOL:automatic]
synonym: "gonada of female reproductive system" EXACT [OBOL:automatic]
synonym: "gonada of genitalia of female organism" EXACT [OBOL:automatic]
synonym: "gonada of reproductive system of female organism" EXACT [OBOL:automatic]
synonym: "ovaries" RELATED PLURAL []
synonym: "ovarium" RELATED LATIN [Wikipedia:Ovary]
synonym: "ovary" EXACT []
synonym: "ovum-producing ovary" EXACT SENSU [GO:0061039]
synonym: "reproductive system of female organism gonad" EXACT [OBOL:automatic]
synonym: "reproductive system of female organism gonada" EXACT [OBOL:automatic]
xref: AAO:0000371
xref: BILA:0000125
xref: BTO:0000975
xref: EHDAA2:0001360
xref: EHDAA:8124
xref: EMAPA:17962
xref: EV:0100111
xref: FBbt:00004865
xref: FMA:7209
xref: GAID:367
xref: http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: MA:0000384
xref: MESH:A.05.360.319.114.630
xref: MIAA:0000125
xref: ncithesaurus:Ovary
xref: OpenCyc:Mx4rvVi9QJwpEbGdrcN5Y29ycA
xref: SCTID:181464007
xref: TAO:0000403
xref: VHOG:0000251
xref: XAO:0000258
xref: ZFA:0000403
property_value: UBPROP:0000001 "Either of paired female reproductive organs involved in production of ova and female sex hormones.[AAO]" xsd:string
property_value: UBPROP:0000001 "Female reproductive organ.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass gonad (TAO:0000413) CHANGED TO: develops_from gonad (UBERON:0000991)[TAO]" xsd:string
is_a: UBERON:0000991 ! gonad
is_a: UBERON:0003134 ! female reproductive organ
relationship: part_of UBERON:0000474
intersection_of: UBERON:0000991 ! gonad
intersection_of: part_of UBERON:0000474 ! female reproductive system
disjoint_from: UBERON:0009117 ! indifferent gonad
relationship: develops_from UBERON:0009117 ! indifferent gonad
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0000993
name: oviduct
def: "passage from the ovaries to the outside of the body[Wikipedia:Oviduct]." [Wikipedia:Oviduct]
comment: note that the more specific class fallopian tube is included, which has mammal-specific relationships
subset: uberon_slim
subset: vertebrate_core
synonym: "salpinx" RELATED [BTO:0000980]
synonym: "tuba uterina" RELATED [BTO:0000980]
synonym: "tuba uterinae" RELATED [BTO:0000980]
synonym: "uterine tube" RELATED []
xref: AAO:0010533
xref: BTO:0000980
xref: EFO:0000974
xref: EMAPA:18984
xref: GAID:366
xref: MAT:0000126
xref: MESH:A.13.706
xref: MIAA:0000126
xref: ncithesaurus:Oviduct
xref: TAO:0000560
xref: VHOG:0001136
xref: XAO:0003052
xref: ZFA:0000560
is_a: UBERON:0000025 ! tube
is_a: UBERON:0005156 ! reproductive structure
relationship: continuous_with UBERON:0000992 ! female gonad
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0000994
name: spermathecum
def: "an organ of the female reproductive tract in insects, some molluscs, oligochaeta worms and certain other invertebrates and vertebrates.[1] Its purpose is to receive and store sperm from the male, and can sometimes be the site of fertilization when the oocytes are ready.[2] Some species have multiple spermathecae, as seen in earthworms, where four pairs of spermathecae are present. One pair in 6,7,8 and 9 segments. They receive and store the spermatozoa of another earthworm during copulation.[3] They are lined with epithelium and are variable in shape; some are thin, heavily coiled tubes, others are vague outpocketings from the main reproductive tract. It is one of the many variations in sexual reproduction[WP]. an accordion-like tube that contains sperm and is the site of oocyte fertilization." [Wikipedia:Spermatheca]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "receptaculum seminis" RELATED [BTO:0001273]
synonym: "seminal receptacle" RELATED []
synonym: "spermatheca" RELATED PLURAL []
xref: BTO:0001273
xref: EFO:0000977
xref: FBbt:00004921
xref: HAO:0000945
xref: MAT:0000168
xref: MIAA:0000168
xref: TGMA:0000560
xref: WBbt:0005319
is_a: UBERON:0000062 ! organ
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0000991 ! gonad
[Term]
id: UBERON:0000995
name: uterus
def: "a major female hormone-responsive reproductive sex organ of most mammals including humans. One end, the cervix, opens into the vagina, while the other is connected to one or both fallopian tubes, depending on the species. It is within the uterus that the fetus develops during gestation, usually developing completely in placental mammals such as humans and partially in marsupials such as kangaroos and opossums. Two uteruses usually form initially in a female fetus, and in placental mammals they may partially or completely fuse into a single uterus depending on the species. In many species with two uteruses, only one is functional. Humans and other higher primates such as chimpanzees, along with horses, usually have a single completely fused uterus, although in some individuals the uteruses may not have completely fused[WP]." [Wikipedia:Uterus]
comment: Most animals that lay eggs, such as birds and reptiles, have an oviduct instead of a uterus. In monotremes, mammals which lay eggs and include the platypus, either the term uterus or oviduct is used to describe the same organ, but the egg does not develop a placenta within the mother and thus does not receive further nourishment after formation and fertilization. Marsupials have two uteruses, each of which connect to a lateral vagina and which both use a third, middle "vagina" which functions as the birth canal. Marsupial embryos form a choriovitelline "placenta" (which can be thought of as something between a monotreme egg and a "true" placenta), in which the egg's yolk sac supplies a large part of the embryo's nutrition but also attaches to the uterine wall and takes nutrients from the mother's bloodstream.
subset: organ_slim
subset: uberon_slim
synonym: "uterine horn" RELATED []
synonym: "uterine horns" RELATED []
synonym: "womb" RELATED [BTO:0001424]
xref: BTO:0001424
xref: EFO:0000975
xref: EMAPA:29915
xref: EV:0100113
xref: FMA:17558
xref: GAID:172
xref: galen:Uterus
xref: http://upload.wikimedia.org/wikipedia/commons/6/6a/Female_reproductive_system_lateral_nolabel.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: MA:0000389
xref: MAT:0000127
xref: MESH:A.05.360.319.679
xref: MIAA:0000127
xref: ncithesaurus:Uterus
xref: OpenCyc:Mx4rvViojJwpEbGdrcN5Y29ycA
xref: SCTID:181452004
xref: VHOG:0001137
is_a: UBERON:0003975 ! internal female genitalia
relationship: develops_from UBERON:0005795 ! embryonic uterus
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0000996
name: vagina
def: "a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina.[FMA]" [FMA:19949, Wikipedia:Vagina]
comment: Taxon notes (via vHOG): "The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.688
subset: uberon_slim
xref: BTO:0000243
xref: EFO:0000976
xref: EMAPA:18986
xref: EV:0100117
xref: FMA:19949
xref: GAID:381
xref: galen:Vagina
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/Illu_repdt_female.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Vaginal_opening_-_english_description.jpg/200px-Vaginal_opening_-_english_description.jpg
xref: MA:0000394
xref: MAT:0000128
xref: MESH:A.05.360.319.779
xref: MIAA:0000128
xref: ncithesaurus:Vagina
xref: OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA
xref: SCTID:181441005
xref: VHOG:0001138
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003975 ! internal female genitalia
relationship: develops_from UBERON:0000164 {source="Wikipedia"} ! primitive urogenital sinus
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0000997
name: mammalian vulva
def: "external genital organs of the female mammal[WP]." [Wikipedia:Vulva]
comment: editor note: todo - add pudendum
subset: uberon_slim
synonym: "female pudendum" EXACT [FMA:20462]
synonym: "female pudendum" EXACT [BTO:0003101]
synonym: "mammalian vulva" EXACT []
synonym: "puboperineal region" EXACT [FMA:20462]
synonym: "pudendum femininum" EXACT [FMA:20462, FMA:TA]
synonym: "pudendum femininum" RELATED LATIN [Wikipedia:Vulva]
synonym: "skin of female pudendum" EXACT []
synonym: "skin of vulva" EXACT []
synonym: "vulva" EXACT [MA:0000395]
xref: BTO:0003101
xref: EFO:0000978
xref: EV:0100118
xref: FMA:20462
xref: GAID:383
xref: galen:Vulva
xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Female_unshaved_genitalia.jpg
xref: MA:0000395
xref: MAT:0000169
xref: MESH:A.05.360.319.887
xref: MIAA:0000169
xref: ncithesaurus:Vulva
xref: OpenCyc:Mx4rvgAWeJwpEbGdrcN5Y29ycA
xref: SCTID:265796001
xref: VHOG:0001458
is_a: UBERON:0005056 {source="BTO"} ! external female genitalia
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0000998
name: seminal vesicle
def: "Either of a pair of glandular pouches that lie one on either side of the male reproductive tract and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct." [BTO:0001234, Wikipedia:Seminal_vesicle]
comment: Function notes: The seminal vesicles secrete a significant proportion of the fluid that ultimately becomes semen. Lipofuscin granules from dead epithelial cells give the secretion its yellowish color. About 50-70%[2] of the seminal fluid in humans originates from the seminal vesicles, but is not expelled in the first ejaculate fractions which are dominated by spermatozoa and zinc-rich prostatic fluid.
subset: organ_slim
subset: uberon_slim
synonym: "glandula seminalis" RELATED [BTO:0001234]
synonym: "glandula vesiculosa" RELATED [BTO:0001234]
synonym: "gon_male_sves" RELATED []
synonym: "seminal gland" BROAD []
synonym: "vas efferens" RELATED []
synonym: "vesicul%c3%a6 seminales" RELATED [Wikipedia:Seminal_vesicle]
synonym: "vesicula seminalis" RELATED [BTO:0001234]
synonym: "vesicula seminalis" RELATED [Wikipedia:Seminal_vesicle]
synonym: "vesiculae seminales" RELATED [Wikipedia:Seminal_vesicle]
synonym: "vesicular gland" RELATED [Wikipedia:Seminal_vesicle]
synonym: "vesicular glands" RELATED [Wikipedia:Seminal_vesicle]
synonym: "vesicular seminalis" RELATED [Wikipedia:Seminal_vesicle]
synonym: "vesiculæ seminales" RELATED LATIN [Wikipedia:Seminal_vesicle]
xref: AAO:0010788
xref: BTO:0001234
xref: EFO:0000986
xref: EMAPA:19180
xref: EV:0100106
xref: FMA:19386
xref: GAID:394
xref: http://upload.wikimedia.org/wikipedia/commons/d/d1/Male_anatomy_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Male_anatomy_en.svg/200px-Male_anatomy_en.svg.png
xref: MA:0000410
xref: MAT:0000171
xref: MESH:A.05.360.444.713
xref: MIAA:0000171
xref: ncithesaurus:Seminal_Vesicle
xref: OpenCyc:Mx4rwTtRpJwpEbGdrcN5Y29ycA
xref: SCTID:181434004
xref: VHOG:0001379
is_a: UBERON:0006868 ! seminal fluid secreting gland
relationship: develops_from UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000473 ! testis
relationship: secretes UBERON:0010143 ! seminal vesicle fluid
[Term]
id: UBERON:0000999
name: ejaculatory duct
def: "The Ejaculatory ducts (ductus ejaculatorii) are paired structures in male anatomy, about 2 cm in length. Each ejaculatory duct is formed by the union of the vas deferens with the duct of the seminal vesicle. They pass through the prostate, and empty into the urethra at the Colliculus seminalis. During ejaculation, semen passes through the ducts and exits the body via the penis[WP,unvetted]." [Wikipedia:Ejaculatory_duct]
subset: uberon_slim
synonym: "ductus ejaculatorii" EXACT PLURAL [BTO:0001580]
synonym: "ductus ejaculatorii" RELATED LATIN [Wikipedia:Ejaculatory_duct]
synonym: "ductus ejaculatorius" EXACT [BTO:0001580]
xref: BTO:0001580
xref: EFO:0000985
xref: EMAPA:19088
xref: FMA:19325
xref: GAID:388
xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png
xref: MAT:0000170
xref: MESH:A.05.360.444.251
xref: MIAA:0000170
xref: ncithesaurus:Ejaculatory_Duct
xref: OpenCyc:Mx4rwOt7MJwpEbGdrcN5Y29ycA
xref: SCTID:279665005
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: channel_for UBERON:0001968 ! semen
relationship: channel_for UBERON:0010143 ! seminal vesicle fluid
relationship: channels_from UBERON:0000998 ! seminal vesicle
relationship: channels_from UBERON:0001000 ! vas deferens
relationship: channels_into UBERON:0000057 ! urethra
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0001000
name: vas deferens
def: "duct that transports sperm from the testis. In mammals this is from the epididymis." [Wikipedia:Vas_deferens]
comment: Taxon notes (from WP): Most vertebrates have some form of duct to transfer the sperm from the testes to the urethra. In cartilaginous fish and amphibians, sperm is carried through the archinephric duct, which also partially helps to transport urine from the kidneys. In teleosts, there is a distinct sperm duct, separate from the ureters, and often called the vas deferens, although probably not truly homologous with that in humans. In cartilaginous fishes, the part of the archinephric duct closest to the testis is coiled up to form an epididymis. Below this are a number of small glands secreting components of the seminal fluid. The final portion of the duct also receives ducts from the kidneys in most species. In amniotes, however, the archinephric duct has become a true vas deferens, and is used only for conducting sperm, never urine. As in cartilaginous fish, the upper part of the duct forms the epididymis. In many species, the vas deferens ends in a small sac for storing sperm. The only vertebrates to lack any structure resembling a vas deferens are the primitive jawless fishes, which release sperm directly into the body cavity, and then into the surrounding water through a simple opening in the body wall.
subset: uberon_slim
subset: vertebrate_core
synonym: "deferent duct" EXACT []
synonym: "ductus deferens" EXACT [Wikipedia:Vas_deferens]
synonym: "sperm duct" RELATED []
synonym: "vas deferen" EXACT []
synonym: "vasa deferentia" RELATED []
xref: BTO:0001427
xref: EFO:0000981
xref: EMAPA:18681
xref: EV:0100105
xref: FMA:19234
xref: GAID:404
xref: galen:VasDeferens
xref: http://upload.wikimedia.org/wikipedia/commons/d/d1/Male_anatomy_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Male_anatomy_en.svg/200px-Male_anatomy_en.svg.png
xref: MA:0000413
xref: MESH:A.05.360.444.930
xref: MIAA:0000129
xref: ncithesaurus:Vas_Deferens
xref: OpenCyc:Mx4rvjv7bpwpEbGdrcN5Y29ycA
xref: SCTID:245467009
xref: VHOG:0001135
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: channel_for UBERON:0001968 ! semen
relationship: channels_from UBERON:0001301 ! epididymis
relationship: channels_into UBERON:0000999 ! ejaculatory duct
relationship: part_of UBERON:0005352 {source="FMA"} ! spermatic cord
relationship: part_of UBERON:0006947 ! male genital duct
[Term]
id: UBERON:0001001
name: chitin-based cuticle
alt_id: UBERON:FBbt_00004970
def: "The main structural component of arthropod cuticle is a polysaccharide, chitin, composed of N-acetylglucosamine units, together with proteins and lipids[WP]." [https://sourceforge.net/tracker/index.php?func=detail&aid=3348965&group_id=36855&atid=440764, UBERON:cjm, Wikipedia:Cuticle#Invertebrate_zoology]
comment: TODO - split from exoskeleton? Also: See above sf item to see if this belongs in GO
subset: uberon_slim
synonym: "arthropod cuticle" RELATED []
synonym: "cuticle" NARROW [FBbt:00004970]
synonym: "exoskeleton" BROAD []
synonym: "insect cuticle" RELATED []
xref: EFO:0000944
xref: FBbt:00004970
xref: HAO:0000240
xref: MAT:0000150
xref: MIAA:0000150
xref: OpenCyc:Mx4rvVkBTJwpEbGdrcN5Y29ycA
is_a: UBERON:0001002 ! cuticle
relationship: develops_from UBERON:0007376 ! outer epithelial layer
relationship: part_of UBERON:0002416 ! integumental system
[Term]
id: UBERON:0001002
name: cuticle
def: "tough but flexible, non-mineral outer coverings of an organism, or parts of an organism, that provide protection. Cuticles are non-homologous, differing in their origin, structure and chemical composition[WP]." [http://sourceforge.net/tracker/?func=detail&aid=3348965&group_id=36855&atid=440764, Wikipedia:Cuticle]
comment: TODO - check cuticle vs exoskeleton. Note that GO has a very generic definition of cuticle. See also arthropod-anatomy ontology. Note in ncit Cuticle is a plant part
subset: uberon_slim
synonym: "cuticula" RELATED [BTO:0001600]
xref: BTO:0001600
is_a: UBERON:0000476 ! acellular anatomical structure
disjoint_from: UBERON:0004882 ! eponychium
[Term]
id: UBERON:0001003
name: epidermis
def: "The outer layer of the skin[WP]. cellular, multilayered epithelium derived from the ectoderm[ZFA]." [ISBN10:0073040584, Wikipedia:Epidermis_(skin)]
comment: Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. In terrestrial vertebrates the epidermis often forms an outer keratinized or cornified layer, the stratum corneum. Interaction between the epideris and dermis gives rise to feathers (birds), hair and mammary glands (mammals), teeth and scales (placoid: chondrichthyans; cosmoids, ganoid, cycloid in bony fishes).
subset: uberon_slim
subset: vertebrate_core
synonym: "adult epidermis" EXACT []
synonym: "skin" BROAD []
synonym: "vertebrate epidermis" EXACT []
xref: AAO:0000143
xref: BTO:0000404
xref: EFO:0000954
xref: EHDAA2:0001844
xref: EMAPA:17525
xref: EV:0100153
xref: FMA:70596
xref: GAID:932
xref: MA:0000153
xref: MAT:0000154
xref: MESH:A.10.272.497
xref: MIAA:0000154
xref: ncithesaurus:Epidermis
xref: SCTID:361694003
xref: TAO:0000105
xref: VHOG:0000077
xref: XAO:0000028
xref: ZFA:0000105
property_value: UBPROP:0000001 "A cellular, multilayered epithelium derived from the ectoderm. Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. Le Guellec et al, 2004.[TAO]" xsd:string
property_value: UBPROP:0000001 "The outer epithelial layer of the external integument of the body that is derived from the embryonic epiblast.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass external integument structures (AAO:0000961)[AAO]" xsd:string
is_a: UBERON:0007376 ! outer epithelial layer
is_a: UBERON:0010371 ! ecto-epithelium
relationship: adjacent_to UBERON:0002067 ! dermis
relationship: developmentally_replaces UBERON:0003055 ! periderm
relationship: develops_from UBERON:0007383 ! enveloping layer of ectoderm
relationship: part_of UBERON:0002097 ! skin of body
relationship: part_of UBERON:0002199 ! integument
relationship: surrounds UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0001004
name: respiratory system
def: "Functional system which consists of structures involved in respiration." [Wikipedia:Respiratory_system]
subset: functional_classification
subset: uberon_slim
subset: vertebrate_core
synonym: "apparatus respiratorius" EXACT []
synonym: "apparatus respiratorius " RELATED [BTO:0000203]
synonym: "Atmungssystem" RELATED [BTO:0000203]
synonym: "respiratory system" EXACT []
synonym: "systema respiratorium" RELATED LATIN [Wikipedia:Respiratory_system]
xref: AAO:0000541
xref: BTO:0000203
xref: EFO:0000804
xref: EHDAA2:0001604
xref: EHDAA:2203
xref: EMAPA:16727
xref: EV:0100036
xref: FMA:7158
xref: GAID:78
xref: http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Respiratory_system_complete_en.svg/200px-Respiratory_system_complete_en.svg.png
xref: MA:0000327
xref: MAT:0000030
xref: MESH:A.04
xref: MIAA:0000030
xref: ncithesaurus:Respiratory_System
xref: OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA
xref: SCTID:278197002
xref: TAO:0000272
xref: VHOG:0000202
xref: XAO:0000117
xref: ZFA:0000272
property_value: UBPROP:0000001 "The anatomical system in which the exchange of oxygen and carbon dioxide between the organism and its environment.[AAO]" xsd:string
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! excretory system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0001005
name: respiratory airway
def: "An airway through which respiratory air passes in organisms." [Wikipedia:Trachea]
comment: This class generically groups trachea and analagous structures throughout metazoa. Consider renaming, as the term could be taken to mean lumen of tracheal system (e.g. in SNOMED)
subset: grouping_class
subset: uberon_slim
xref: SCTID:361380005
is_a: UBERON:0003103 ! compound organ
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0001006
name: spiracle
def: "OBSOLETE: The mostly slit-like opening on the body surface through which air is taken into the respiratory system." [ISBN:3110148986, Wikipedia:Spiracle]
comment: This class was obsoleted as it grouped together disparate classes. For the fish structure, see UBERON:0010019. The arthropod structure will presumably be added to the arthropod anatomy
synonym: "open tracheal system spiracle" NARROW [GO:0035277]
synonym: "spiracle of open tracheal system" NARROW [GO:0035277]
synonym: "spiracular gland" RELATED []
xref: EFO:0000936
xref: MAT:0000208
xref: MIAA:0000208
is_obsolete: true
consider: UBERON:0010019
[Term]
id: UBERON:0001007
name: digestive system
def: "Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, NLM:alimentary+system, Wikipedia:Digestive_system\,]
comment: note that many anatomy ontologies consider gastrointestinal system synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class
subset: uberon_slim
subset: vertebrate_core
synonym: "alimentary system" RELATED []
synonym: "alimentary tract" RELATED []
synonym: "gastrointestinal system" RELATED []
synonym: "gut" RELATED []
xref: AAO:0000129
xref: BILA:0000082
xref: BTO:0000058
xref: EFO:0000793
xref: EV:0100056
xref: FBbt:00005055
xref: FMA:7152
xref: GAID:278
xref: galen:DigestiveSystem
xref: MA:0002431
xref: MAT:0000018
xref: MESH:A.03
xref: MIAA:0000018
xref: ncithesaurus:Digestive_System
xref: SCTID:278859004
xref: TADS:0000170
xref: TAO:0000339
xref: WBbt:0005748
xref: XAO:0000125
xref: ZFA:0000339
property_value: UBPROP:0000001 "An anatomical system consisting of the alimentary canal and digestive glands responsible for intake, absorption, digestion and excretion of food.[AAO]" xsd:string
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0001008 ! excretory system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0001008
name: excretory system
def: "The excretory system is the system of an organism that mainly performs the function of excretion, the bodily process of discharging wastes. It is responsible for the elimination of wastes produced by the processes that maintain homeostasis." [BILA:0000015, Wikipedia:Excretory_system]
comment: In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page); we merge two BTO classes here
subset: uberon_slim
subset: vertebrate_core
synonym: "renal or urinary system" RELATED [EHDAA:5901]
synonym: "renal system" EXACT [GO:0001977]
synonym: "renal/urinary system" RELATED []
synonym: "systema urinaria" EXACT [FMA:7159]
synonym: "systema urinarium" EXACT [BTO:0003092]
synonym: "urinary system" EXACT []
synonym: "urinary tract" EXACT []
xref: AAO:0010257
xref: BILA:0000015
xref: BTO:0001244
xref: BTO:0003092
xref: EFO:0000803
xref: EHDAA2:0001601
xref: EHDAA:5901
xref: EMAPA:17366
xref: EV:0100095
xref: FBbt:00005056
xref: FMA:7159
xref: GAID:391
xref: galen:UrinaryTract
xref: MA:0000325
xref: MAT:0000027
xref: MESH:A.05.810
xref: MIAA:0000027
xref: ncithesaurus:Urinary_System
xref: SCTID:362204003
xref: TADS:0000162
xref: TAO:0000163
xref: VHOG:0000723
xref: WBbt:0005736
xref: XAO:0000143
xref: ZFA:0000163
property_value: RO:0002161 NCBITaxon:110815
property_value: UBPROP:0000001 "An anatomical system which consists of organs and tissues which produce, store, and excrete urine.[AAO]" xsd:string
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0001009
name: circulatory system
def: "organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]." [Wikipedia:Circulatory_system]
comment: the cardiovascular system and the lymphatic system are parts of the circulatory system
subset: uberon_slim
synonym: "systema cardiovasculare" RELATED LATIN [Wikipedia:Circulatory_system]
xref: AAO:0000959
xref: FBbt:00005057
xref: http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png
xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA
xref: VHOG:0001248
property_value: RO:0002161 NCBITaxon:6073
property_value: RO:0002161 NCBITaxon:6157
property_value: UBPROP:0000001 "Anatomical system of ion binding, a pumping mechanism, and an efficient vascular system; consisting of the blood, heart, and blood and lymph vessels, respectively.[AAO]" xsd:string
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0001010
name: diaphysis of ulna
synonym: "body of ulna" EXACT [FMA:33760]
synonym: "corpus ulnae" EXACT [FMA:33760]
synonym: "shaft of ulna" EXACT [FMA:33760]
synonym: "ulnar diaphysis" EXACT [FMA:33760]
xref: FMA:33760
xref: SCTID:302520004
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004769 ! diaphysis
relationship: part_of UBERON:0001424
intersection_of: UBERON:0004769 ! diaphysis
intersection_of: part_of UBERON:0001424 ! ulna
relationship: part_of UBERON:0001424 ! ulna
[Term]
id: UBERON:0001011
name: hemolymph
def: "Blood analogue used by all arthropods and most mollusks that have an open circulatory system. In these animals there is no distinction between blood and interstitial fluid. The liquid fills all of the interior (the hemocoel) of the body and surrounds all cells." [Wikipedia:Hemolymph]
subset: uberon_slim
synonym: "haemolymph" RELATED []
xref: BTO:0000572
xref: FBbt:00005061
xref: GAID:1220
xref: MAT:0000054
xref: MESH:A.13.453
xref: MIAA:0000054
xref: TGMA:0000000
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001012
name: head of radius
def: "The head of the radius has a cylindrical form, and on its upper surface is a shallow cup or fovea for articulation with the capitulum (or capitellum) of the humerus. The circumference of the head is smooth; it is broad medially where it articulates with the radial notch of the ulna, narrow in the rest of its extent, which is embraced by the annular ligament. The deepest point in the fovea is not axi-symmetric with the long axis of the radius, creating a cam effect during pronation and supination[WP]." [Wikipedia:Head_of_radius]
synonym: "caput radii" RELATED LATIN [Wikipedia:Head_of_radius]
synonym: "radial head" EXACT [FMA:33773]
xref: FMA:33773
xref: galen:HeadOfRadius
xref: http://upload.wikimedia.org/wikipedia/commons/4/47/Gray214.png
xref: SCTID:181941003
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint
relationship: part_of UBERON:0004413 {source="FMA"} ! proximal epiphysis of radius
[Term]
id: UBERON:0001013
name: adipose tissue
def: "Dense irregular connective tissue, which predominantly consists of adipocytes. Fat is stored in adipose tissue." [NLM:adipose+tissue, Wikipedia:Adipose_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "adipose" RELATED [BTO:0001487]
synonym: "bodyfat" RELATED [BTO:0001487]
synonym: "fat" EXACT [MA:0000009]
synonym: "fat tissue" EXACT []
synonym: "fatty tissue" EXACT []
xref: AAO:0000001
xref: AEO:000020
xref: BTO:0001487
xref: EFO:0000234
xref: EFO:0000790
xref: EHDAA2:0003120
xref: EV:0100381
xref: FMA:20110
xref: GAID:920
xref: galen:FattyTissue
xref: MA:0000009
xref: MAT:0000015
xref: MESH:A.10.165.114
xref: MIAA:0000015
xref: ncithesaurus:Adipose_Tissue
xref: OpenCyc:Mx4rvVjc_ZwpEbGdrcN5Y29ycA
xref: SCTID:55603005
xref: TAO:0002134
xref: VHOG:0001284
xref: XAO:0003049
xref: ZFA:0005345
property_value: UBPROP:0000001 "Connective tissue in which fat is stored.[TAO]" xsd:string
property_value: UBPROP:0000001 "Tissue that contains adipocytes, used for cushioning, thermal insulation, lubrication (primarily in the pericardium) and energy storage.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass connective tissue proper (AAO:0000099)[AAO]" xsd:string
is_a: UBERON:0002384 {source="MA"} ! connective tissue
disjoint_from: UBERON:0003714 ! neural tissue
[Term]
id: UBERON:0001014
name: fat body
def: "the encapsulated adipose tissue." [MP:0005334]
synonym: "fat pad" EXACT []
is_obsolete: true
consider: UBERON:0003917
[Term]
id: UBERON:0001015
name: musculature
def: "A subdivision of the muscular system." [UBERON:cjm, Wikipedia:Muscular_system]
comment: AO notes: In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (*not* MA:musculature). AAO is generally confused here.
subset: uberon_slim
subset: vertebrate_core
synonym: "muscle group" EXACT []
synonym: "muscle system" RELATED []
synonym: "muscles" RELATED []
synonym: "muscles set" EXACT []
synonym: "musculature" EXACT []
synonym: "musculature system" RELATED []
synonym: "musculi" EXACT [FMA:32558, FMA:TA]
synonym: "set of muscles" EXACT [FMA:32558]
synonym: "set of organs" EXACT []
synonym: "set of skeletal muscles" EXACT [MA:0000165]
xref: AAO:0011066
xref: BTO:0000887
xref: EFO:0001949
xref: FMA:32558
xref: http://upload.wikimedia.org/wikipedia/commons/e/e5/Muscles_anterior_labeled.png
xref: MA:0000165
xref: ncithesaurus:Muscle
xref: OpenCyc:Mx4rvVjmr5wpEbGdrcN5Y29ycA
xref: TAO:0000548
xref: VSAO:0005038
xref: WBbt:0005737
xref: ZFA:0000548
property_value: "spatially_disjoint_from" UBERON:0001474
is_a: UBERON:0000480 ! anatomical group
relationship: part_of UBERON:0000383 ! musculature of body
[Term]
id: UBERON:0001016
name: nervous system
def: "a network of specialized cells that communicate information about an organism's surroundings and itself[Wikipedia]." [ISBN:0-14-051288-8, ISBN:3110148986, NLM:nervous+system, WB:rynl, Wikipedia:Nervous_system, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "nerve net" NARROW [Wikipedia:Nerve_net]
synonym: "Nervensystem" RELATED [BTO:0001484]
synonym: "systema nervosum" RELATED LATIN [Wikipedia:Nervous_system]
xref: AAO:0000324
xref: BILA:0000079
xref: BTO:0001484
xref: EFO:0000802
xref: EHDAA2:0001246
xref: EHDAA:826
xref: EMAPA:16469
xref: EV:0100162
xref: FBbt:00005093
xref: FMA:7157
xref: GAID:466
xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/TE-Nervous_system_diagram.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png
xref: MA:0000016
xref: MAT:0000026
xref: MESH:A.08
xref: MIAA:0000026
xref: ncithesaurus:Nervous_System
xref: NIF_GrossAnatomy:birnlex_844
xref: OpenCyc:Mx4rvViT_pwpEbGdrcN5Y29ycA
xref: SCTID:278196006
xref: TAO:0000396
xref: VHOG:0000402
xref: WBbt:0005735
xref: XAO:0000177
xref: ZFA:0000396
property_value: UBPROP:0000001 "A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical system consisting of nerve bodies and nerve fibers which regulate the response of the body to external and internal stimuli.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: differentiates_from ectoderm (AAO:0000137) CHANGED TO: develops_from ectoderm (UBERON:0000924)[AAO]" xsd:string
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004121 ! ectoderm-derived structure
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: develops_from UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0001017
name: central nervous system
def: "The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord[GO]. The part of the nervous system which in vertebrates consists of the brain and spinal cord, to which sensory impulses are transmitted and from which motor impulses pass out, and which supervises and coordinates the activity of the entire nervous system[XAO]. Neuraxis plus retina[INCF]." [FB:gg, ISBN:3110148986, NLM:central+nervous+system, Wikipedia:Central_nervous_system, ZFIN:curator]
subset: uberon_slim
subset: vertebrate_core
synonym: "cerebrospinal axis" EXACT [FMA:55675]
synonym: "CNS" EXACT []
synonym: "neuraxis" EXACT [FMA:55675]
synonym: "systema nervosum centrale" EXACT [FMA:55675, FMA:TA]
xref: AAO:0000090
xref: BILA:0000080
xref: BTO:0000227
xref: EFO:0000908
xref: EHDAA2:0000225
xref: EHDAA:828
xref: EMAPA:16470
xref: EMAPA:16754
xref: EV:0100163
xref: FBbt:00005094
xref: FMA:55675
xref: GAID:570
xref: MA:0000167
xref: MAT:0000457
xref: MESH:A.08.186
xref: ncithesaurus:Central_Nervous_System
xref: NIF_GrossAnatomy:birnlex_1099
xref: OpenCyc:Mx4rvzYt3pwpEbGdrcN5Y29ycA
xref: SCTID:278199004
xref: TAO:0000012
xref: VHOG:0000293
xref: XAO:0000215
xref: ZFA:0000012
property_value: UBPROP:0000001 "Part of the nervous system which includes the brain and spinal cord.[AAO]" xsd:string
property_value: UBPROP:0000001 "The brain and spinal cord. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision
relationship: develops_from UBERON:0001049 {evidence="definitional", gci_relation="part_of", gci_filler="NCBITaxon:7742"} ! neural tube
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001018
name: axon tract
def: "A group of axons linking two or more neuropils and having a common origin, termination[FBbt]." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html]
comment: WP says this is the analog of peripheral nerves in CNS
synonym: "axonal tract" EXACT []
synonym: "neuraxis tract" EXACT [FMA:83847]
synonym: "tract" RELATED []
synonym: "tract of neuraxis" EXACT [FMA:83847]
xref: EV:0100304
xref: FBbt:00005100
xref: FMA:83847
is_a: UBERON:0000122 ! neuron projection bundle
is_a: UBERON:0011215 ! cell part cluster of neuraxis
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0001019
name: fascicle
def: "A slender neuron projection bundle[FBbt]." [Wikipedia:Nervous_system_fascicle]
comment: TODO - invert specific? note FBbt class not disjoint from tract. Consider merging with 'neuron projection bundle'
subset: uberon_slim
synonym: "fasciculus" EXACT []
synonym: "nerve bundle" EXACT [FMA:12235]
synonym: "nerve fasciculus" EXACT [FMA:12235]
synonym: "neural fasciculus" EXACT [FMA:12235]
xref: BTO:0004101
xref: FBbt:00005101
xref: FMA:12235
xref: ncithesaurus:Fascicle
xref: NIF_GrossAnatomy:birnlex_872
xref: TGMA:0000088
is_a: UBERON:0000122 ! neuron projection bundle
[Term]
id: UBERON:0001020
name: commissure
def: "White matter fiber bundle that crosses the midline of the brain or spinal cord[NIF]. In the context of Drosophila refers to a broad band of axons connecting the same neuropils each side of the brain[FBbt]." [NIF_GrossAnatomy:nlx_anat_20090513, Wikipedia:Commissure]
comment: *not* the same as FMA:76741 Commissure
subset: uberon_slim
synonym: "commissure of neuraxis" EXACT [FMA:83906]
synonym: "neuraxis commissure" EXACT [FMA:83906]
xref: FBbt:00005103
xref: FMA:83906
xref: ncithesaurus:Commissure
xref: NIF_GrossAnatomy:nlx_anat_20090513
xref: OpenCyc:Mx4rdBrmE6gOEdudWQACs5b6Bw
xref: TADS:0000201
is_a: UBERON:0001018 ! axon tract
[Term]
id: UBERON:0001021
name: nerve
def: "an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]. Segment of neural tree organ which has as its parts a nerve trunk and its branches; together with other nerves of the same tree it constitutes a neural tree. Examples: chorda tympani, digastric branch of facial nerve, greater petrosal nerve, posterior cutaneous branch of posterior ramus of cervical nerve, superior lateral cutaneous nerve of arm[FMA]." [FMA:65132, Wikipedia:Nervous_system, ZFA:0007009, ZFIN:curator]
comment: check nerve vs peripheral nerve vs tract. Check isa hierarchy - we include under neural tissue as well as neuron projection bundle for now. FMA also has this under organ segment
subset: uberon_slim
subset: vertebrate_core
synonym: "neural subtree" RELATED [FMA:65132]
xref: AAO:0011070
xref: AEO:0000137
xref: BTO:0000925
xref: EHDAA2:0003137
xref: EHDAA:2851
xref: EHDAA:3776
xref: EHDAA:4657
xref: EV:0100162
xref: FBbt:00005105
xref: FMA:65132
xref: GAID:758
xref: galen:Nerve
xref: MA:0000217
xref: ncithesaurus:Nerve
xref: OpenCyc:Mx4rwP3lkpwpEbGdrcN5Y29ycA
xref: SCTID:256864008
xref: TAO:0007009
xref: XAO:0003047
xref: ZFA:0007009
property_value: UBPROP:0000001 "A portion of tissue which is a fasiculated group of axons.[TAO]" xsd:string
is_a: UBERON:0000122 {source="FBbt"} ! neuron projection bundle
is_a: UBERON:0003714 {source="EHDAA2"} ! neural tissue
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0001022
name: cell body
def: "Cell component which consists of the plasma membrane and the cytoplasm surrounding the nucleus.[FMA]" [FMA:FMA, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Cell_body]
comment: TODO - use GO
subset: uberon_slim
synonym: "cell soma" EXACT []
synonym: "soma" RELATED []
xref: FBbt:00005107
xref: FMA:67301
xref: GO:0043025
xref: NIF_Subcellular:sao1044911821
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0001023
name: dendrite
def: "The region of a neuron receiving inputs from other neurons, typically a slender neurite, often branched. In insect neurons, this is often not a clear designation and often presynaptic sites co-extend with postsynaptic ones." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Dendrite]
comment: TODO - use GO
subset: uberon_slim
xref: FBbt:00005110
xref: FMA:67314
xref: GAID:749
xref: GO:0030425
xref: MESH:A.08.663.256
xref: ncithesaurus:Dendrite
xref: NIF_Subcellular:sao1211023249
xref: OpenCyc:Mx4rviIdspwpEbGdrcN5Y29ycA
xref: TGMA:0001373
is_a: UBERON:0001024 ! neurite
[Term]
id: UBERON:0001024
name: neurite
def: "One of the processes or extensions of a neuron, axon or dendrite or cell body fiber. // Cell appendage of the neuron which includes the axon and the dendrite." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Neurite]
comment: TODO - use GO
subset: uberon_slim
xref: FBbt:00005113
xref: FMA:61814
xref: GAID:751
xref: GO:0043005
xref: MESH:A.08.663.256.500
xref: NIF_Subcellular:sao-867568886
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0001025
name: synapse
def: "The structural contact that is the site of transmission between neurons, identified by a presynaptic ribbon and synaptic vesicles as the input element and one or (usually) more postsynaptic elements with various specializations (membrane densities, cisternae, etc.)." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Synapse]
comment: TODO - use GO
subset: uberon_slim
synonym: "synaptic junction" EXACT []
xref: FBbt:00005114
xref: FMA:67408
xref: GAID:766
xref: GO:0045202
xref: MESH:A.08.850
xref: ncithesaurus:Synapse
xref: NIF_Subcellular:sao914572699
xref: SCTID:362298009
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0001026
name: motor nerve
def: "General anatomical term applied to nerves in which somatic efferent nerve fibers predominate[FMA]. A motor nerve is an efferent nerve that exclusively contains the axons of somatic and branchial motoneurons, which innervate skeletal muscles (that ensure locomotion) and branchial muscles (that motorize the face and neck)[WP]." [Wikipedia:Motor_nerve]
synonym: "efferent nerve" RELATED []
synonym: "nervus motorius" EXACT []
is_obsolete: true
[Term]
id: UBERON:0001027
name: sensory nerve
def: "General anatomical term applied to nerves in which somatic afferent nerve fibers predominate[FMA]. nerves that receive sensory stimuli made up of nerve fibers, called sensory fibers (mechanoreceptor fibers sense body movement and pressure placed against the body, and nociceptor fibers sense tissue injury)[WP]." [Wikipedia:Sensory_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "afferent nerve" RELATED []
synonym: "nervus sensorius" EXACT []
synonym: "nervus sensorius" RELATED LATIN [Wikipedia:Sensory_nerve]
xref: AEO:0000201
xref: EHDAA2:0003200
xref: FBbt:00005136
xref: FMA:5868
xref: OpenCyc:Mx4rv0GdXpwpEbGdrcN5Y29ycA
is_a: UBERON:0001021 ! nerve
[Term]
id: UBERON:0001028
name: diaphysis of radius
synonym: "body of radius" EXACT [FMA:33782]
synonym: "corpus radii" EXACT [FMA:33782]
synonym: "radial diaphysis" EXACT [FMA:33782]
synonym: "shaft of radius" EXACT [FMA:33782]
xref: FMA:33782
xref: SCTID:302518002
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004769 ! diaphysis
relationship: part_of UBERON:0001423
intersection_of: UBERON:0004769 ! diaphysis
intersection_of: part_of UBERON:0001423 ! radius bone
relationship: part_of UBERON:0001423 ! radius bone
[Term]
id: UBERON:0001029
name: neuromuscular junction
def: "." [Wikipedia:Neuromuscular_junction]
comment: TODO - use GO
subset: uberon_slim
synonym: "myoneural junction" EXACT []
synonym: "synapsis neuromuscularis; junctio neuromuscularis" RELATED LATIN [Wikipedia:Neuromuscular_junction]
xref: FBbt:00005142
xref: FMA:61803
xref: GAID:809
xref: GO:0031594
xref: http://upload.wikimedia.org/wikipedia/commons/2/23/NMJ.jpg
xref: MESH:A.08.800.550.550.550
xref: NIF_Subcellular:sao1124888485
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001030
name: synaptic ribbon
comment: TODO - use GO
synonym: "ribbon synapse" EXACT []
xref: FBbt:00005143
xref: FMA:67107
xref: NIF_Subcellular:sao1884931180
is_a: UBERON:0001025 ! synapse
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001029 ! neuromuscular junction
[Term]
id: UBERON:0001031
name: neurilemma
def: "thin membranous sheath around a nerve fiber[TFD]." [http://www.thefreedictionary.com/neurolemma, Wikipedia:Neurilemma]
comment: FMA def is 'Neural tissue which consists of Schwann cells' which does not fit, but we still use 'neural tissue' here. WP def specifically states Schwann cells, which would restrict it to PNS
subset: uberon_slim
synonym: "endoneural membrane" RELATED [BTO:0003048]
synonym: "neurolemma" EXACT []
synonym: "Schwann's membrane" RELATED [BTO:0003048]
synonym: "sheath of Schwann" EXACT []
xref: BTO:0003048
xref: FBbt:00005151
xref: FMA:62976
xref: GAID:730
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Gray631.png/200px-Gray631.png
xref: MESH:A.08.561.600
xref: ncithesaurus:Sheath_of_Schwann
is_a: UBERON:0003714 ! neural tissue
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001032
name: sensory system
def: "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." [Wikipedia:Sensory_system]
comment: note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs
subset: uberon_slim
subset: vertebrate_core
synonym: "organa sensuum" EXACT [FMA:75259, FMA:TA]
synonym: "organa sensuum" RELATED LATIN [Wikipedia:Sensory_system]
synonym: "sense organ subsystem" EXACT []
synonym: "sense organs" EXACT [FMA:75259]
synonym: "sense organs set" EXACT [FMA:75259]
synonym: "sensory organ system" RELATED []
synonym: "sensory subsystem" EXACT []
xref: AAO:0000555
xref: BILA:0000099
xref: EFO:0000805
xref: EHDAA2:0003094
xref: EMAPA:16192
xref: FBbt:00005827
xref: FMA:75259
xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png
xref: MA:0002442
xref: MAT:0000031
xref: MESH:A.09
xref: MIAA:0000031
xref: NIF_GrossAnatomy:nlx_anat_090816
xref: TAO:0000282
xref: VHOG:0001674
xref: XAO:0003194
xref: ZFA:0000282
is_a: UBERON:0000467 ! anatomical system
relationship: overlaps UBERON:0001016 ! nervous system
relationship: part_of UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0001033
name: gustatory system
def: "A subset of the sensory system for the sensing of taste." [Wikipedia:Gustatory_system]
comment: in ZFA and MA this is a subtype of sensory system. we should change sensory system to disambiguate parts and wholes
subset: uberon_slim
subset: vertebrate_core
synonym: "gustatory organ system" EXACT []
synonym: "taste system" EXACT []
xref: AAO:0010577
xref: BILA:0000143
xref: EFO:0000830
xref: FMA:7194
xref: MA:0002446
xref: MAT:0000275
xref: MIAA:0000275
xref: NIF_GrossAnatomy:nlx_anat_090803
xref: SCTID:423940004
xref: TAO:0001101
xref: XAO:0003197
xref: ZFA:0001101
property_value: UBPROP:0000001 "The sensory system used for the sense of taste.[AAO]" xsd:string
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0001034
name: photoreceptor
def: "Can refer to a light sensitive organ, a photoreceptor cell or a photoreceptor protein. This class was made obsolete because it was ambiguous" [Wikipedia:Photoreceptor]
xref: BTO:0001060
is_obsolete: true
[Term]
id: UBERON:0001035
name: dento-alveolar joint
def: "Fibrous joint in which the periodontal ligament connects a tooth to the alveolar bone of the maxilla or mandible. Examples: Dento-alveolar joint of incisor tooth.[FMA]" [FMA:FMA, Wikipedia:Gomphosis]
comment: This class was created automatically from a combination of ontologies
synonym: "dento-alveolar syndesmosis" EXACT [FMA:7495]
synonym: "gomphosis" EXACT [MA:0001499]
synonym: "peg-and-socket joint" EXACT [FMA:7495]
synonym: "socket" BROAD [FMA:7495]
synonym: "syndesmosis dentoalveolaris" EXACT LATIN [FMA:7495, FMA:TA]
xref: FMA:7495
xref: http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1003.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray1003.png/200px-Gray1003.png
xref: MA:0001499
xref: OpenCyc:Mx4rveAQeZwpEbGdrcN5Y29ycA
xref: SCTID:50870008
is_a: UBERON:0002209 {source="FMA"} ! fibrous joint
is_a: UBERON:0002213 {source="MA"} ! cartilaginous joint
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: connects UBERON:0001091 ! calcareous tooth
relationship: connects UBERON:0004103 ! alveolar ridge
relationship: part_of UBERON:0001708 ! jaw skeleton
[Term]
id: UBERON:0001037
name: strand of hair
def: "A filament, mostly protein, that grows from follicles found in the dermis[WP]." [Wikipedia:Hair]
comment: this class defines an individual hair. todo - consider fur / coat of fur, which has_part hair. TODO: for now we treat vibrissa/whisker as a syonym, but these have different follicles. We could introduce subclasses (see also: Pangolin scales)
subset: uberon_slim
synonym: "coat hair" RELATED []
synonym: "coat/ hair" RELATED []
synonym: "fur" RELATED []
synonym: "hair" EXACT []
synonym: "microchaeta" RELATED []
synonym: "quill" RELATED SENSU []
synonym: "setulae" RELATED []
synonym: "unguis" RELATED LATIN [Wikipedia:Hair]
synonym: "vibrissa" RELATED SENSU []
synonym: "whisker" RELATED SENSU []
xref: BTO:0001501
xref: EFO:0000958
xref: EMAPA:18769
xref: EV:0100157
xref: FMA:53667
xref: GAID:71
xref: http://upload.wikimedia.org/wikipedia/commons/2/25/Gray945.png
xref: MA:0000155
xref: MAT:0000160
xref: MESH:A.17.360
xref: MIAA:0000160
xref: ncithesaurus:Hair
xref: OpenCyc:Mx4rvVjOX5wpEbGdrcN5Y29ycA-Mp88EdaAAACgycbRww
xref: SCTID:361702001
xref: VHOG:0001191
is_a: UBERON:0000021 {source="FMA"} ! cutaneous appendage
relationship: develops_from UBERON:0002073 ! hair follicle
relationship: part_of UBERON:0001003 {source="FMA"} ! epidermis
[Term]
id: UBERON:0001038
name: chordotonal organ
def: "Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament." [FB:FBrf0056378, Wikipedia:Chordotonal_organ]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "ch" RELATED []
synonym: "scolopophorous organ" RELATED []
xref: EFO:0000940
xref: FBbt:00005215
xref: MAT:0000209
xref: MIAA:0000209
is_a: UBERON:0000020 ! sense organ
[Term]
id: UBERON:0001040
name: yolk sac
def: "Membranous sac attached to an embryo, providing early nourishment in the form of yolk in bony fishes, sharks, reptiles, birds, and primitive mammals. It functions as the developmental circulatory system of the human embryo, before internal circulation begins. In the mouse, the yolk sac is the first site of blood formation, generating primitive macrophages and erythrocytes." [Wikipedia:Yolk_sac]
comment: Taxon notes: In therians, a structure homologous to the yolk sac is is present, but contains no yolk platelets. Instead it is filled with fluid [ISBN10:0073040584 "Vertebrates, Kardong"]
subset: uberon_slim
synonym: "vesicula umbilicalis; saccus vitellinus" RELATED LATIN [Wikipedia:Yolk_sac]
xref: BTO:0001471
xref: EFO:0003078
xref: EHDAA2:0002212
xref: EHDAA:164
xref: EMAPA:16085
xref: FMA:87180
xref: GAID:1301
xref: http://upload.wikimedia.org/wikipedia/commons/1/17/Gray22.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray22.png/200px-Gray22.png
xref: MESH:A.16.254.403.981
xref: ncithesaurus:Yolk_Sac
xref: SCTID:362845002
xref: VHOG:0000830
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005631 ! extraembryonic membrane
relationship: develops_from UBERON:0000925 {source="ISBN10:0073040584"} ! endoderm
relationship: develops_from UBERON:0004872 {source="ISBN10:0073040584"} ! splanchnic layer of lateral plate mesoderm
[Term]
id: UBERON:0001041
name: foregut
def: "Anterior subdivision of a digestive tract[CJM]. An anterior part of the alimentary canal derived from the ectoderm[WP]." [Wikipedia:Foregut]
comment: Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
subset: developmental_classification
subset: uberon_slim
synonym: "praeenteron; proenteron" RELATED LATIN [Wikipedia:Foregut]
xref: AAO:0011042
xref: BILA:0000085
xref: BTO:0000507
xref: EHDAA2:0000557
xref: EHDAA:520
xref: EMAPA:16548
xref: FBbt:00005379
xref: FMA:45616
xref: http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray27.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray27.png/200px-Gray27.png
xref: MA:0001526
xref: ncithesaurus:Foregut
xref: SCTID:361409009
xref: TGMA:0001014
xref: VHOG:0000285
xref: XAO:0000232
is_a: UBERON:0004921 ! subdivision of digestive tract
[Term]
id: UBERON:0001042
name: chordate pharynx
def: "Funnel-shaped fibromuscular tube that conducts food to the esophagus, and air to the larynyx and lungs. It is located posterior to the NASAL CAVITY; ORAL CAVITY; and LARYNX, and extends from the SKULL BASE to the inferior border of the CRICOID CARTILAGE anteriorly and to the inferior border of the C6 vertebra posteriorly. It is divided into the NASOPHARYNX; OROPHARYNX; and HYPOPHARYNX (laryngopharynx)[MESH]. Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills[ZFA]." [Wikipedia:Pharynx]
comment: Note that MA/FMA pharynx not part of digestive/alimentary system, we follow their lead here
subset: uberon_slim
subset: vertebrate_core
synonym: "pharynx" BROAD SENSU [FMA:46688]
xref: AAO:0000967
xref: BTO:0001049
xref: EFO:0000836
xref: EHDAA2:0001458
xref: EHDAA:2947
xref: EMAPA:16706
xref: EMAPA:18838
xref: EV:0100065
xref: FMA:46688
xref: GAID:155
xref: galen:Pharynx
xref: MA:0000432
xref: MESH:A.03.867
xref: ncithesaurus:Pharynx
xref: OpenCyc:Mx4rvViv7ZwpEbGdrcN5Y29ycA
xref: SCTID:181211006
xref: TAO:0000056
xref: VHOG:0000462
xref: XAO:0003227
xref: ZFA:0000056
property_value: UBPROP:0000001 "Anatomical cavity bounded by the derivatives of the branchial arches.[AAO]" xsd:string
property_value: UBPROP:0000001 "Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: develops_from respiratory system (UBERON:0001004)[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: part_of_proxy respiratory system (AAO:0000541) CHANGED TO: part_of respiratory system (UBERON:0001004)[AAO]" xsd:string
is_a: UBERON:0006562 ! pharynx
relationship: develops_from UBERON:0009145 {source="EHDAA2"} ! pharyngeal region
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0001043
name: esophagus
def: "Tube that connects the pharynx to the stomach. In mammals, the oesophagus connects the buccal cavity with the stomach. The stratified squamous non-keratinised epithelium lining the buccal cavity is continued through the pharynx down into the oesophagus. The lowest part of the oesophagus (ca. 2 cm) is lined with gastric mucosa and covered by peritoneum. The main body of the oesophagus is lined with small, simple mucous glands. Each gland opens into the lumen by a long duct which pierces the muscularis mucosae (Wilson and Washington, 1989). A sphincter is situated at the point where the oesophagus enters the stomach to prevent gastro-oesophageal reflux, i.e. to prevent acidic gastric contents from reaching stratified epithelia of the oesophagus, where they can cause inflammation and irritation (Wilson and Washington, 1989; Brown et al., 1993)." [http://www.rivm.nl/interspeciesinfo/inter/oesophagus/, Wikipedia:Esophagus]
comment: esophagus NOT part of gut in MA. part of gut in ZFA. part_of gut (via UGIT) in FMA. Consider splitting. Interspecies: The human oesophagus is 25 cm long and has a diameter of ca. 2 cm. Only little information was found on the oesophagus in rat, rabbit and pig. The oesophagus of rat (75 x 2 mm) and rabbit has no mucous glands and the cardia of the stomach has a well-developed sphincter, which prevents them from vomiting (Hebel and Stromberg, 1988; Manning et al., 1994). Morphologically the oesophagus is similar in man and pig; both are omnivores and have a non-keratinised epithelium, submucous glands and similar membrane enzymes. Like in humans, pigs can suffer from reflux oesophagitis and stress ulceration of the oesophagus. The pig oesophagus may therefore be a good model for investigation compared to the human oesophagus (Christie et al., 1995)
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "gullet" EXACT []
synonym: "oesophagus" EXACT []
synonym: "Åsophagus" RELATED LATIN [Wikipedia:Esophagus]
xref: AAO:0000145
xref: ANISEED:1235301
xref: BTO:0000959
xref: EFO:0000835
xref: EHDAA2:0001285
xref: EHDAA:2937
xref: EMAPA:16833
xref: EMAPA:18860
xref: EV:0100069
xref: FMA:7131
xref: GAID:291
xref: galen:Esophagus
xref: http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg
xref: MA:0000352
xref: MAT:0000048
xref: MESH:A.03.365
xref: MIAA:0000048
xref: ncithesaurus:Esophagus
xref: OpenCyc:Mx4rvVj9Q5wpEbGdrcN5Y29ycA
xref: SCTID:181245004
xref: TAO:0000204
xref: VHOG:0000450
xref: XAO:0000127
xref: ZFA:0000204
property_value: UBPROP:0000001 "Anterior end of the alimentary canal lined with smooth muscle. Bounded anteriorly by a constriction in the pharynx. Bounded posteriorly by and increase in circular and/or longitudinal smooth muscle associated with the stomach.[AAO]" xsd:string
is_a: UBERON:0004921 ! subdivision of digestive tract
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: develops_from UBERON:0009143 ! esophageal region
relationship: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0001041 ! foregut
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0001044
name: salivary gland
def: "saliva-secreting exocrine glands of the oral cavity[GO]. The salivary glands in mammals are exocrine glands, glands with ducts, that produce saliva. They also secrete amylase, an enzyme that breaks down starch into maltose. In other organisms such as insects, salivary glands are often used to produce biologically important proteins like silk or glues, and fly salivary glands contain polytene chromosomes that have been useful in genetic research[WP]." [GO:0007431, Wikipedia:Salivary_gland]
comment: currently we define saliva and salivary glands very generally in functional terms but it may be more appropriate to split this class. From WP: In most vertebrates, saliva does not contain any enzymes, consisting of mucus and water only, and its primary function is to moisten food while eating. As a result, true salivary glands are rarely found in fish or aquatic tetrapods, although there are often individual mucus-secreting cells. Amphibians have a single salivary gland, the intermaxillary gland, located in the forward part of the palate. Reptiles and birds normally have only very small glands on the lips, palate, and base of the mouth, although there are some birds with large glands, which produce a sticky saliva that helps in nest-building. The distinct parotid, submandibular, and sublingual glands are only developed in mammals.[3] The salivary glands of some species, however, are modified to produce enzymes; salivary amylase is found in many, but by no means all, bird and mammal species (including humans, as noted above). Furthermore, the venom glands of poisonous snakes, Gila monsters, and some shrews, are modified salivary glands
subset: functional_classification
subset: organ_slim
subset: uberon_slim
synonym: "glandulae salivariae" RELATED LATIN [Wikipedia:Salivary_gland]
xref: BTO:0001203
xref: EFO:0000859
xref: EHDAA2:0001775
xref: EHDAA:7987
xref: EMAPA:17751
xref: EV:0100059
xref: FBbt:00005382
xref: FMA:9597
xref: GAID:937
xref: galen:SalivaryGland
xref: http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg
xref: MA:0000346
xref: MAT:0000079
xref: MESH:A.10.336.779
xref: MIAA:0000079
xref: ncithesaurus:Salivary_Gland
xref: OpenCyc:Mx4rvVjl5ZwpEbGdrcN5Y29ycA
xref: SCTID:181236000
xref: VHOG:0000376
is_a: UBERON:0003293 ! gland of oral region
is_a: UBERON:0003294 ! gland of foregut
relationship: secretes UBERON:0001836
intersection_of: UBERON:0002530 ! gland
intersection_of: secretes UBERON:0001836 ! saliva
relationship: part_of UBERON:0000166 ! oral opening
relationship: part_of UBERON:0000167 ! oral cavity
relationship: part_of UBERON:0001041 ! foregut
relationship: secretes UBERON:0001836 ! saliva
[Term]
id: UBERON:0001045
name: midgut
def: "Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine." [GO:0007494, Wikipedia:Midgut]
comment: Editor notes: Note we define this generically to include invertebrates, but the class may be split in future. We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
subset: developmental_classification
subset: uberon_slim
synonym: "mesenteron" RELATED LATIN [Wikipedia:Midgut]
xref: BILA:0000086
xref: BTO:0000863
xref: EFO:0001950
xref: EHDAA2:0001185
xref: EHDAA:983
xref: EMAPA:16255
xref: FBbt:00005383
xref: FMA:45617
xref: http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg
xref: MA:0001564
xref: ncithesaurus:Midgut
xref: SCTID:361410004
xref: TGMA:0001036
xref: VHOG:0000290
xref: XAO:0000103
is_a: UBERON:0004921 ! subdivision of digestive tract
[Term]
id: UBERON:0001046
name: hindgut
def: "Posterior subdivision of a digestive tract[CJM]." [Wikipedia:Hindgut]
comment: Editor notes: Note we define this generically to include invertebrates, but the class may be split in future (vertebrates have some contribution from NC - UBERONREF:0000002). We may explicitly make this a developmental class. AO Notes: in FMA this class has no children.
subset: developmental_classification
subset: uberon_slim
synonym: "metenteron" RELATED LATIN [Wikipedia:Hindgut]
xref: AAO:0011052
xref: BILA:0000087
xref: BTO:0000510
xref: EHDAA2:0000779
xref: EHDAA:975
xref: EMAPA:16715
xref: FBbt:00005384
xref: FMA:45618
xref: http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray472.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray472.png/200px-Gray472.png
xref: MA:0001527
xref: ncithesaurus:Hindgut
xref: SCTID:362856002
xref: TGMA:0001020
xref: VHOG:0000459
xref: XAO:0000104
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0003104 {source="Wikipedia"} ! mesenchyme
[Term]
id: UBERON:0001047
name: neural glomerulus
alt_id: UBERON:FBbt_00005386
def: "Roundish subunit structure of synaptic neuropil, often ensheathed by glial lamellae and reflecting the terminal arborization domain(s) of one or more neurons[FBbt]. Large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets[NIF]." [http://ccdb.ucsd.edu/SAO/images/glomerulus_sw_512x512.jpg, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html]
comment: isa or partof neuropil? TODO. Add to GO?
subset: uberon_slim
synonym: "glomerulus" BROAD [FBbt:00005386, NIF_Subcellular:sao587858733]
xref: FBbt:00005386
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png
xref: NIF_Subcellular:sao587858733
is_a: UBERON:0002606 ! neuropil
[Term]
id: UBERON:0001048
name: primordium
def: "Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt]. An embryonic structure that is the rudiment or commencement of a part or organ." [BTO:0001886, FB:DJS, FB:FBrf0089570, FB:FBrf0178740, Wikipedia:Primordium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bud" RELATED []
synonym: "placode" RELATED [FBbt:00005495]
synonym: "rudiment" RELATED []
xref: AEO:0000171
xref: BTO:0001886
xref: EFO:0001652
xref: EHDAA2:0003171
xref: FBbt:00005495
xref: FMA:86589
xref: MAT:0000482
xref: ncithesaurus:Primordium
xref: XAO:0003043
is_a: UBERON:0005423 {source="EHDAA2"} ! developing anatomical structure
[Term]
id: UBERON:0001049
name: neural tube
def: "In the developing vertebrate, the neural tube is the embryo's precursor to the central nervous system, which comprises the brain and spinal cord. The neural groove gradually deepens as the neural folds become elevated, and ultimately the folds meet and coalesce in the middle line and convert the groove into a closed tube, the neural tube or neural canal (which strictly speaking is the center of the neural tube), the ectodermal wall of which forms the rudiment of the nervous system. [WP,unvetted]." [Wikipedia:Neural_tube]
comment: The mature structure of the neural tube exists when the tube has been segmented into the forebrain, midbrain, hindbrain and spinal cord regions. In addition neural crest has budded away from the epithelium[GO:0021915]
subset: uberon_slim
subset: vertebrate_core
synonym: "presumptive central nervous system" RELATED []
synonym: "tubus neuralis" RELATED LATIN [Wikipedia:Neural_tube]
xref: AAO:0010617
xref: BTO:0001057
xref: EHDAA2:0001254
xref: EHDAA:2869
xref: EHDAA:908
xref: EMAPA:16164
xref: EMAPA:16530
xref: EMAPA:16757
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: MAT:0000069
xref: MIAA:0000069
xref: ncithesaurus:Neural_Tube
xref: SCTID:362852000
xref: TAO:0001135
xref: VHOG:0000307
xref: XAO:0003204
xref: ZFA:0001135
property_value: UBPROP:0000001 "Hollow epithelial tube on dorsal side of the embryo that develops into the central nervous system.[AAO]" xsd:string
is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007497 ! developing epithelial placode
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0002346 ! neurectoderm
relationship: develops_from UBERON:0005068 ! neural rod
relationship: develops_into UBERON:0001017 ! central nervous system
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001016 {source="GO"} ! nervous system
[Term]
id: UBERON:0001050
name: atrium
def: "Anatomical chamber. Examples: right atrium of heart, atrium of middle nasal meatus, atrium of tympanic cavity, atrium of alveolus." [FMA:85574]
comment: obsoleted because 'atrium' as a general grouping class that encompasses the cardiac atrium and atrium of alveolus atrium is of questionable value. Furthermore, the use of the term 'atrium' in the generic sense is misleading, as this is commonly used to refer specifically to the cardiac atrium
is_obsolete: true
consider: UBERON:0002081
[Term]
id: UBERON:0001051
name: hypopharynx
def: "Bottom part of the pharynx, and is the part of the throat that connects to the esophagus." [Wikipedia:Hypopharynx]
subset: uberon_slim
synonym: "laryngeal pharynx" EXACT [FMA:54877]
synonym: "laryngopharynx" EXACT [FMA:54877]
synonym: "pars laryngea pharyngis" RELATED [BTO:0001740]
synonym: "pars laryngea pharyngis" RELATED LATIN [Wikipedia:Hypopharynx]
xref: BTO:0001740
xref: EFO:0001388
xref: EHDAA2:0004574
xref: EV:0100068
xref: FMA:54880
xref: GAID:338
xref: http://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg
xref: MA:0001796
xref: MESH:A.03.867.490
xref: ncithesaurus:Hypopharynx
xref: OpenCyc:Mx4rvq5O0JwpEbGdrcN5Y29ycA
xref: SCTID:281490009
xref: VHOG:0000445
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001042 ! chordate pharynx
[Term]
id: UBERON:0001052
name: rectum
def: "the final straight portion of the large intestine in some mammals, and the gut in others, terminating in the anus[WP]." [BTO:0001158, Wikipedia:Rectum]
comment: Taxon notes: In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html
subset: uberon_slim
synonym: "intestinum rectum" RELATED [BTO:0001158]
synonym: "rectal sac" RELATED []
xref: AAO:0010401
xref: BTO:0001158
xref: EFO:0000848
xref: EHDAA2:0001592
xref: EHDAA:5836
xref: EMAPA:17896
xref: EMAPA:18925
xref: EV:0100081
xref: FMA:14544
xref: GAID:311
xref: galen:Rectum
xref: http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif
xref: MA:0000336
xref: MAT:0000050
xref: MESH:A.03.492.411.495.767
xref: MIAA:0000050
xref: ncithesaurus:Rectum
xref: OpenCyc:Mx4rvVjaU5wpEbGdrcN5Y29ycA
xref: SCTID:181261002
xref: VHOG:0000427
xref: VHOG:0001751
xref: WBbt:0005773
xref: XAO:0000238
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: continuous_with UBERON:0001159 ! sigmoid colon
relationship: continuous_with UBERON:0001245 ! anus
relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut
relationship: part_of UBERON:0000059 {source="MA"} ! large intestine
relationship: part_of UBERON:0004907 {source="FMA"} ! lower digestive tract
relationship: part_of UBERON:0005409 {source="FMA"} ! gastrointestinal system
[Term]
id: UBERON:0001053
name: neurohemal organ
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
synonym: "neurohaemal organ" RELATED []
xref: BTO:0002106
xref: EFO:0000864
xref: FBbt:00005757
xref: MAT:0000212
xref: MIAA:0000212
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001054
name: Malpighian tubule
def: "The most important structure of the insect's excretory organ, which may comprise cystiform or labyrinthine highly versatile tubules having their outlet into the inital section of the rectum[FBbt]. Any of a group of long blind vessels opening into the posterior part of the alimentary canal in most insects and some other arthropods and functioning primarily as excretory organs[BTO]." [ISBN:3110148986, Wikipedia:Malpighian_tubule]
comment: Editor note: this will be ceded to the Arthropod Anatomy Ontology
subset: uberon_slim
synonym: "Malphigian tube" RELATED [BTO:0000810]
synonym: "tuba Malpighii" RELATED [BTO:0000810]
xref: BTO:0000810
xref: EFO:0000243
xref: FBbt:00001896
xref: FBbt:00005786
xref: GAID:1228
xref: MAT:0000123
xref: MESH:A.13.574
xref: MIAA:0000123
xref: SCTID:41055008
xref: TADS:0000163
xref: TGMA:0001038
is_a: UBERON:0009773 {source="GO"} ! renal tubule
[Term]
id: UBERON:0001055
name: ureter
def: "the tube that conducts the urine from the renal pelvis to the bladder." [MP:0000534]
is_obsolete: true
consider: UBERON:0000056
consider: UBERON:0000057
[Term]
id: UBERON:0001056
name: corpus cardiacum
comment: This class was created automatically from a combination of ontologies
synonym: "corpora cardiaca" RELATED [BTO:0000432]
xref: BTO:0000432
xref: EFO:0000380
xref: FBbt:00005799
xref: MAT:0000211
xref: MIAA:0000211
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001057
name: corpus allatum
def: "A neurosecretory organ forming part of the retrocerebral complex." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html]
comment: todo - move to arthropod ontology
subset: uberon_slim
synonym: "corpora allata" RELATED [BTO:0000291]
xref: BTO:0000291
xref: EFO:0000379
xref: FBbt:00005800
xref: MAT:0000210
xref: MESH:A.08.713.100
xref: MIAA:0000210
is_a: UBERON:0000479 ! tissue
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001058
name: mushroom body
def: "Paired neuropils, thought to be crucial to olfactory associative learning and memory. Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Mushroom_body]
comment: Taxon notes: Also in annelids. "Comparison to the verte- brate pallium reveals that the annelid mushroom bodies develop from similar molecular coordinates within a conserved overall molecular brain topology and that their development involves conserved patterning mechanisms and produces conserved neuron types that existed already in the proto- stome-deuterostome ancestors. These data indicate deep homology of pallium and mushroom bodies and date back the origin of higher brain centers to prebilaterian times" [PMID:20813265]
subset: uberon_slim
xref: BTO:0002675
xref: EFO:0000925
xref: FBbt:00005801
xref: GAID:1231
xref: MAT:0000336
xref: MESH:A.13.641
xref: MIAA:0000336
is_a: UBERON:0003339 ! ganglion of central nervous system
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0001059
name: pars intercerebralis
def: "a neurosecretory center of the insect brain, located along the anterior midline[wiktionary]. A medial cleft or depression dividing the left and right protocerebrum and containing numerous large and small somata of neurosecretory and neuromodulatory neurons[FBbt]." [http://en.wiktionary.org/wiki/pars_intercerebralis, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0000926
xref: FBbt:00005802
xref: MAT:0000337
xref: MIAA:0000337
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0001062
name: anatomical entity
def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH, FMA:62955]
subset: upper_level
xref: AAO:0010841
xref: AEO:0000000
xref: BILA:0000000
xref: CARO:0000000
xref: EHDAA2:0002229
xref: FBbt_root:00000000
xref: FMA:62955
xref: HAO:0000000
xref: MA:0000001
xref: NIF_GrossAnatomy:birnlex_6
xref: TAO:0100000
xref: TGMA:0001822
xref: ZFA:0100000
property_value: UBPROP:0000001 "Temporary placeholder for unclassified terms.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass amphibian anatomical entity (AAO:0010001)[AAO]" xsd:string
[Term]
id: UBERON:0001063
name: flocculus
alt_id: UBERON:Flocculus-MA_0000992
def: "a small lobe of the cerebellum at the posterior border of the middle cerebellar peduncle anterior to the biventer lobule[WP]." [Wikipedia:Flocculus_(cerebellar)]
comment: AO Notes: flocculus is an exact label for two distinct classes in NIF. Function notes: At its base, the flocculus receives input from the middle ears vestibular system and regulates balance. Many floccular projections descend to the spinal cord and connect to the motor nuclei involved in control of eye movement.[WP]. Taxon notes: enlarged in pterosaurs[PMID:14586467]
subset: uberon_slim
synonym: "hemispheric lobule X" RELATED INCONSISTENT [NIF_GrossAnatomy:nlx_anat_20081213]
xref: ABA:FL
xref: FMA:83881
xref: MA:0000992
xref: NIF_GrossAnatomy:birnlex_1329
xref: SCTID:30711003
property_value: "spatially_disjoint_from" UBERON:0005347
property_value: "spatially_disjoint_from" UBERON:0005348
property_value: "spatially_disjoint_from" UBERON:0005349
property_value: "spatially_disjoint_from" UBERON:0005350
property_value: "spatially_disjoint_from" UBERON:0005351
is_a: UBERON:0002749 ! regional part of cerebellar cortex
relationship: part_of UBERON:0002245 ! hemisphere of cerebellum
[Term]
id: UBERON:0001064
name: ventral pancreatic duct
alt_id: UBERON:0005627
def: "a duct joining the pancreas to the common bile duct to supply pancreatic juices which aid in digestion provided by the exocrine pancreas. The pancreatic duct joins the common bile duct just prior to the ampulla of Vater, after which both ducts perforate the medial side of the second portion of the duodenum at the major duodenal papilla." [Wikipedia:Pancreatic_duct]
comment: Development notes: Upon reaching its final destination, the ventral pancreatic bud fuses with the much larger dorsal pancreatic bud. At this point of fusion, the main ducts of the ventral and dorsal pancreatic buds fuse, forming the duct of Wirsung, the main pancreatic duct.[WP]
subset: uberon_slim
synonym: "canal of Wirsung" RELATED [BTO:0002362]
synonym: "chief pancreatic duct" EXACT [FMA:16003]
synonym: "duct of Wirsung" EXACT [Wikipedia:Pancreatic_duct]
synonym: "hepaticopancreatic duct" RELATED [BTO:0002362]
synonym: "main pancreatic duct" EXACT [MA:0000126]
synonym: "pancreatic duct" BROAD [MESH:A.03.734.667]
xref: BTO:0002362
xref: EHDAA2:0001396
xref: EHDAA:6905
xref: EMAPA:18821
xref: FMA:16003
xref: GAID:337
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1100.png/200px-Gray1100.png
xref: MA:0000126
xref: MESH:A.03.734.667
xref: ncithesaurus:Pancreatic_Duct
xref: RETIRED_EHDAA2:0002177
xref: SCTID:245385001
xref: VHOG:0000256
is_a: UBERON:0002394 ! bile duct
is_a: UBERON:0007329 {source="FMA"} ! pancreatic duct
relationship: channel_for UBERON:0001970 ! bile
relationship: channels_into UBERON:0004913 ! hepatopancreatic ampulla
relationship: continuous_with UBERON:0001174 ! common bile duct
relationship: develops_from UBERON:0003924 {source="EHDAA2"} ! ventral pancreatic bud
relationship: part_of UBERON:0000017 ! exocrine pancreas
[Term]
id: UBERON:0001065
name: parotid duct
def: "The parotid duct, also known as Stensen's duct, is the route that saliva takes from the parotid gland into the mouth. It passes through the buccal fat, buccopharyngeal fascia, and buccinator muscle then opens into the vestibule of the mouth opposite the upper second molar tooth. The buccinator acts as a valve that prevents inflation of the duct during blowing. Running along with the duct superiorly is the transverse facial artery and upper buccal nerve; running along with the duct inferiorly is the lower buccal nerve. [WP,unvetted]." [Wikipedia:Parotid_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "duct of parotid" EXACT [OBOL:automatic]
synonym: "duct of parotid gland" EXACT []
synonym: "ductus parotideus" RELATED LATIN [Wikipedia:Parotid_duct]
synonym: "parotid gland duct" EXACT [OBOL:automatic]
synonym: "stenon duct" EXACT []
synonym: "Stensen's duct" EXACT []
synonym: "Stensens's duct" EXACT []
xref: BTO:0004554
xref: FMA:10420
xref: http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray1023.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Gray1023.png/200px-Gray1023.png
xref: MA:0002697
xref: ncithesaurus:Parotid_Duct
xref: SCTID:362175009
is_a: UBERON:0001837 ! duct of salivary gland
relationship: part_of UBERON:0001831
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001831 ! parotid gland
relationship: channels_from UBERON:0001831 ! parotid gland
relationship: part_of UBERON:0001831 ! parotid gland
[Term]
id: UBERON:0001066
name: intervertebral disk
def: "A pad of fibrocartilage between the articular surfaces of two successive vertebral centra which has nucleus pulposus at its core." [ISBN10:0073040584, Wikipedia:Intervertebral_disk]
comment: Taxon/Terminology notes: strictly speaking the term intervertebral disk [applies to intervertebral cartilage] whose gel-like core is nucleus puloposus, by this definition only in mammals
subset: uberon_slim
synonym: "discus intervertebralis" EXACT [FMA:10446, FMA:TA]
synonym: "intervertebral disc" EXACT []
synonym: "intervertebral fibrocartilage" RELATED [BTO:0003625]
synonym: "spinal disc" EXACT [Wikipedia:Spinal_disc]
synonym: "spinal disk" RELATED [BTO:0003625]
xref: BTO:0003625
xref: EFO:0001370
xref: FMA:10446
xref: GAID:105
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray301.png/200px-Gray301.png
xref: MA:0000110
xref: MESH:A.02.165.410
xref: ncithesaurus:Intervertebral_Disc
xref: OpenCyc:Mx4rv11AcpwpEbGdrcN5Y29ycA
xref: SCTID:244570000
is_a: UBERON:0011135 ! intervertebral cartilage
relationship: has_part UBERON:0002242
intersection_of: UBERON:0011135 ! intervertebral cartilage
intersection_of: has_part UBERON:0002242 ! nucleus pulposus
relationship: has_part UBERON:0002242 ! nucleus pulposus
[Term]
id: UBERON:0001067
name: vertebral arch joint
def: "a synovial joint between the superior articular process of one vertebra and the inferior articular process of the vertebra directly above it. There are two facet joints in each spinal motion segment[WP]." [Wikipedia:Zygapophysial_joint]
subset: uberon_slim
synonym: "articulationes zygapophysiales" RELATED LATIN [Wikipedia:Zygapophysial_joint]
synonym: "facet joint" EXACT []
synonym: "joint of vertebral arch" EXACT []
synonym: "joint of vertebral articular process" EXACT []
synonym: "spinal facet joint" EXACT [HP:0008482]
synonym: "zygapophyseal joint" EXACT []
synonym: "zygapophysial joint" EXACT []
xref: FMA:10447
xref: GAID:275
xref: http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray90.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray90.png/200px-Gray90.png
xref: MA:0001513
xref: MESH:A.02.835.583.979
xref: ncithesaurus:Facet_Joint
xref: OpenCyc:Mx4rvorHEpwpEbGdrcN5Y29ycA
xref: SCTID:89836005
is_a: UBERON:0002217 ! synovial joint
relationship: connects UBERON:0001079
relationship: connects UBERON:0001080
intersection_of: UBERON:0002217 ! synovial joint
intersection_of: connects UBERON:0001079 ! superior articular process of vertebra
intersection_of: connects UBERON:0001080 ! inferior articular process of vertebra
relationship: connects UBERON:0001079 ! superior articular process of vertebra
relationship: connects UBERON:0001080 ! inferior articular process of vertebra
relationship: part_of UBERON:0003861 ! neural arch
[Term]
id: UBERON:0001068
name: skin of back
def: "A zone of skin that is part of a back [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "back skin" EXACT []
synonym: "back zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of back" EXACT [OBOL:automatic]
xref: FMA:10462
xref: FMA:22985
xref: MA:0000498
xref: SCTID:181492002
is_a: UBERON:0001085 ! skin of trunk
relationship: part_of UBERON:0001137
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001137 ! dorsum
relationship: part_of UBERON:0001137 ! dorsum
[Term]
id: UBERON:0001069
name: head of pancreas
def: "The head of pancreas is a portion of the pancreas that is lodged within the curve of the duodenum, and is flattened anteriorly (from before). The other parts of the pancreas are the body and the tail. Its upper border is overlapped by the superior part of the duodenum and its lower overlaps the horizontal part; its right and left borders overlap in front, and insinuate themselves behind, the descending and ascending parts of the duodenum respectively. [WP,unvetted]." [Wikipedia:Head_of_pancreas]
subset: uberon_slim
synonym: "caput pancreatis" RELATED LATIN [Wikipedia:Head_of_pancreas]
synonym: "pancreas head" EXACT []
synonym: "pancreatic head" EXACT []
synonym: "right extremity of pancreas" EXACT []
xref: EHDAA2:0001374
xref: EMAPA:17507
xref: EMAPA:18820
xref: FMA:10468
xref: http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Illu_pancreas_duodenum.jpg/200px-Illu_pancreas_duodenum.jpg
xref: MA:0000122
xref: ncithesaurus:Head_of_the_Pancreas
xref: SCTID:362201006
xref: VHOG:0000448
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0003924 {source="EHDAA2-inferred", source="WP"} ! ventral pancreatic bud
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001070
name: external carotid artery
def: "In human anatomy, the external carotid artery is a major artery of the head and neck. It arises from the common carotid artery when it bifurcates into the external and internal carotid artery." [https://sourceforge.net/tracker/?func=detail&aid=3486863&group_id=76834&atid=1127722, Wikipedia:External_carotid_artery]
comment: Taxon notes: not homologous to the external carotid of zebrafish (Goodrich, 1958) - http://zfish.nichd.nih.gov/zfatlas/Intro%20Page/comparative.html; check XAO
subset: uberon_slim
subset: vertebrate_core
synonym: "arteria carotis externa" RELATED LATIN [Wikipedia:External_carotid_artery]
xref: AAO:0010416
xref: BTO:0004696
xref: EFO:0001953
xref: EHDAA2:0000461
xref: EMAPA:18611
xref: FMA:10635
xref: GAID:480
xref: http://upload.wikimedia.org/wikipedia/commons/1/13/External_carotid_a.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/13/External_carotid_a.gif/200px-External_carotid_a.gif
xref: MA:0001929
xref: MESH:A.07.231.114.186.200.210
xref: ncithesaurus:External_Carotid_Artery
xref: OpenCyc:Mx4rwVJkPZwpEbGdrcN5Y29ycA
xref: SCTID:362044002
xref: VHOG:0000265
xref: XAO:0000345
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005396 {source="MA"} ! carotid artery segment
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: branch_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches
relationship: develops_from UBERON:0001530 {source="EHDAA2"} ! common carotid artery plus branches
relationship: develops_from UBERON:0004363 ! aortic arch
relationship: part_of UBERON:0001530 ! common carotid artery plus branches
relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches
[Term]
id: UBERON:0001071
name: superficial cervical artery
def: "." [Wikipedia:Superficial_cervical_artery]
comment: The transverse cervical artery splits into two branches, a superficial one and a deep one[WP]
subset: uberon_slim
xref: FMA:10665
xref: MA:0002052
xref: ncithesaurus:Superficial_Cervical_Artery
xref: SCTID:161746006
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001072
name: inferior vena cava
def: "Trunk of systemic vein which is formed by the union of the right common iliac vein and the left common iliac vein and terminates in the right atrium." [Wikipedia:Inferior_vena_cava]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "posterior vena cava" EXACT []
synonym: "vena cava inferior" RELATED LATIN [Wikipedia:Inferior_vena_cava]
synonym: "vena cava inferior" RELATED [BTO:0002682]
xref: AAO:0011083
xref: BTO:0002682
xref: EHDAA2:0000611
xref: EMAPA:18416
xref: FMA:10951
xref: GAID:548
xref: galen:InferiorVenaCava
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray577.png/200px-Gray577.png
xref: MA:0000480
xref: MESH:A.07.231.908.949.648
xref: ncithesaurus:Inferior_Vena_Cava
xref: SCTID:181369003
xref: VHOG:0001194
xref: XAO:0000388
is_a: UBERON:0004087 ! vena cava
relationship: develops_from UBERON:0005487 {source="Wikipedia:Vitelline_vein"} ! vitelline vein
[Term]
id: UBERON:0001073
name: ileocecal junction
comment: This class was created automatically from a combination of ontologies
synonym: "ileocaecal junction" EXACT []
xref: FMA:11338
xref: MA:0000332
xref: SCTID:264021000
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000160 ! intestine
[Term]
id: UBERON:0001074
name: pericardial cavity
def: "Cavity of serous sac surrounded by serous pericardium.[FMA]" [FMA:FMA, Wikipedia:Pericardial_cavity]
subset: uberon_slim
subset: vertebrate_core
synonym: "cavitas pericardiaca" RELATED LATIN [Wikipedia:Pericardial_cavity]
synonym: "cavity of pericardial sac" EXACT []
synonym: "pericardial space" EXACT [Wikipedia:Pericardial_cavity]
xref: EHDAA2:0001434
xref: EMAPA:18447
xref: EMAPA:18448
xref: FMA:11350
xref: galen:PericardialSpace
xref: http://upload.wikimedia.org/wikipedia/commons/1/16/Gray968.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: MA:0000053
xref: ncithesaurus:Pericardial_Cavity
xref: SCTID:362027001
xref: TAO:0002220
xref: VHOG:0000556
xref: ZFA:0001655
property_value: "present_in_taxon" NCBITaxon:7718
property_value: UBPROP:0000001 "Anatomical space in which the heart is located and is surrounded by the pericardium.[TAO]" xsd:string
is_a: UBERON:0002323 {source="MA"} ! body cavity
relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom
relationship: part_of UBERON:0002406 {source="FMA"} ! pericardial sac
relationship: surrounded_by UBERON:0002357 ! serous pericardium
[Term]
id: UBERON:0001075
name: body of vertebra
def: "The body is the largest part of a vertebra, and is more or less cylindrical in shape. Its upper and lower surfaces are flattened and rough, and give attachment to the intervertebral fibrocartilages, and each presents a rim around its circumference. In front, the body is convex from side to side and concave from above downward. Behind, it is flat from above downward and slightly concave from side to side. Its anterior surface presents a few small apertures, for the passage of nutrient vessels. On the posterior surface is a single large, irregular aperture, or occasionally more than one, for the exit of the basi-vertebral veins from the body of the vertebra. [WP,unvetted]." [Wikipedia:Body_of_vertebra]
comment: AO notes: VSAO definition states it surrounds notochord but not applicable to post-natal. Editor notes: vertebra classes required generalization for cartilage columns // todo - add subclasses: acoelus, amphicoelus, procoelus, opsithocoelus, heterocoelus; pleurocentrum, intercentrum; todo: add developmental relationships
subset: uberon_slim
subset: vertebrate_core
synonym: "autocentrum" EXACT [ZFA:0000126]
synonym: "centrum" EXACT []
synonym: "centrum of vertebra" EXACT []
synonym: "corpus vertebrae" RELATED LATIN [Wikipedia:Body_of_vertebra]
synonym: "corpus vertebrae" RELATED [Wikipedia:Body_of_vertebra]
synonym: "corpus vertebrae (vertebrale)" EXACT [FMA:11945]
synonym: "vertebral body" EXACT [FMA:11945]
synonym: "vertebral centrum" EXACT [MA:0001457]
xref: AAO:0000697
xref: FMA:11945
xref: http://upload.wikimedia.org/wikipedia/commons/6/63/Corpusvertebrae.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Corpusvertebrae.png/200px-Corpusvertebrae.png
xref: MA:0001457
xref: ncithesaurus:Vertebral_Body
xref: OpenCyc:Mx4rvXU4VpwpEbGdrcN5Y29ycA
xref: SCTID:361745008
xref: SCTID:362867001
xref: TAO:0000126
xref: VSAO:0000183
xref: ZFA:0000126
property_value: UBPROP:0000001 "Centra are represented by mineralized, calcified, or ossified portions that surround the notochord. The autocentrum, present in Danio and all other living teleosts, is formed by direct ossification outside the elastica externa of the notochord (Arratia, 1999).[TAO]" xsd:string
property_value: UBPROP:0000001 "Cylindrical body of bone, round or oval in cross section, which functionally replaces the notochord.[AAO]" xsd:string
property_value: UBPROP:0000001 "Skeletal element that surrounds the notochord.[VSAO]" xsd:string
is_a: UBERON:0004765 {source="VSAO"} ! skeletal element
relationship: part_of UBERON:0002412 {source="MA"} ! vertebra
[Term]
id: UBERON:0001076
name: spinous process of vertebra
def: "The spinous process of a vertebra is directed backward and downward from the junction of the laminae (in humans), and serves for the attachment of muscles and ligaments. In animals without an erect stance, the process points upward and may slant forward or backward. Spinous processes are exaggerated in some animals, such as the extinct Dimetrodon and Spinosaurus, where they form a sail- or finback." [Wikipedia:Spinous_process]
comment: Editor notes: todo - reconcile AAO def: "Small, posteriorly directed process at the posterior margin of each neural arch lamina; it is not a neural spine." [AAO:0000739]
subset: uberon_slim
subset: vertebrate_core
synonym: "neural spine" RELATED []
synonym: "processus spinosus" EXACT []
synonym: "processus spinosus vertebrae" EXACT []
synonym: "vertebra spinous process" EXACT []
xref: AAO:0000705
xref: AAO:0000739
xref: EMAPA:25107
xref: FMA:11948
xref: http://upload.wikimedia.org/wikipedia/commons/4/48/Processusspinosusvertebrae.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Processusspinosusvertebrae.png/200px-Processusspinosusvertebrae.png
xref: MA:0001455
xref: SCTID:264259004
xref: TAO:0001336
xref: ZFA:0001336
property_value: UBPROP:0000001 "Elaboration of the mid-dorsal keel into a posterior or posterolateral process.[AAO]" xsd:string
property_value: UBPROP:0000001 "Neural spines are extensions of neural arches dorsal to the neural canal in the median skeletogenous septum. Neural spines are typically unpaired median structures but can be paired in some instances, e.g., in the abdominal region of basal teleosts such as Leptolepis, Elops, Megalops, and Hiodon).[TAO]" xsd:string
property_value: UBPROP:0000001 "Small, posteriorly directed process at the posterior margin of each neural arch lamina; it is not a neural spine.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of mid-dorsal keel (AAO:0000735)[AAO]" xsd:string
is_a: UBERON:0006061 ! process of vertebra
relationship: part_of UBERON:0003861 ! neural arch
[Term]
id: UBERON:0001077
name: transverse process of vertebra
def: "The transverse or costal processes of a vertebra, two in number, project one at either side from the point where the lamina joins the pedicle, between the superior and inferior articular processes. They serve for the attachment of muscles and ligaments. [WP,unvetted]." [Wikipedia:Transverse_process]
subset: uberon_slim
synonym: "processus transversus" EXACT []
synonym: "processus transversus vertebrae" EXACT []
synonym: "transverse process" EXACT []
synonym: "vertebra transverse process" EXACT []
xref: AAO:0000698
xref: FMA:11949
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Processustransversusvertebrae.PNG/200px-Processustransversusvertebrae.PNG
xref: MA:0001456
xref: SCTID:264238006
xref: XAO:0003102
is_a: UBERON:0006061 ! process of vertebra
[Term]
id: UBERON:0001078
name: pedicle of vertebra
def: "The pedicles are two short, thick processes, which project backward, one on either side, from the upper part of the body, at the junction of its posterior and lateral surfaces. They connect the body of the spinal vertebra to the arch. [WP,unvetted]." [Wikipedia:Pedicle_of_vertebral_arch]
subset: uberon_slim
synonym: "pedicle" BROAD []
synonym: "pedicle of vertebral arch" EXACT [FMA:11950]
synonym: "pediculus arcus vertebrae" EXACT [FMA:TA]
synonym: "pediculus arcus vertebrae, radix arcus vertebrae" RELATED LATIN [Wikipedia:Pedicle_of_vertebral_arch]
synonym: "vertebral pedicle" EXACT [FMA:11950]
xref: FMA:11950
xref: http://upload.wikimedia.org/wikipedia/commons/d/d0/Pediculusarcusvertebrae.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Pediculusarcusvertebrae.png/200px-Pediculusarcusvertebrae.png
xref: MA:0001458
xref: ncithesaurus:Pedicle_of_Vertebral_Arch
xref: OpenCyc:Mx4rvYdjdJwpEbGdrcN5Y29ycA
xref: SCTID:277422007
is_a: UBERON:0006061 ! process of vertebra
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001079
name: superior articular process of vertebra
def: "Paired processes at the cephalic end of the neural arch. The articular facets of the prezygapophyses face dorsomedially and articulate with the lateroventrally facing facets of the postzygapophyses of the preceding vertebra." [AAO:Pugener_and_Maglia_2008]
comment: TODO - add distinct classes for hemal vs neural?
subset: vertebrate_core
synonym: "cranial articular process of vertebra" EXACT []
synonym: "neural prezygapophysis" EXACT [ZFA:0001325]
synonym: "neural prezygopophyses" EXACT [ZFA:0001325]
synonym: "prezygapophysis" EXACT []
synonym: "processus articularis superior" EXACT []
synonym: "vertebra cranial articular process" EXACT []
xref: AAO:0000703
xref: FMA:11953
xref: http://www.informatics.jax.org/cookbook/figures/figure20.shtml
xref: MA:0001452
xref: SCTID:42424006
xref: TAO:0001325
xref: ZFA:0001325
property_value: UBPROP:0000001 "Paired, anteromedially directed processes from the neural arches, ligamentously joined to the postzygapophyses of the preceding vertebra.[TAO]" xsd:string
is_a: UBERON:0006062 ! articular process of vertebra
[Term]
id: UBERON:0001080
name: inferior articular process of vertebra
def: "Paired processes at the caudal end of the neural arch. The articular facets of the postzygapophyses face lateroventrally and articulate with the dorsomedially facing facets of the prezygapophyses of the succeeding vertebra." [AAO:LAP]
comment: TODO - add distinct classes for hemal vs neural?
subset: vertebrate_core
synonym: "caudal articular process of vertebra" EXACT []
synonym: "neural postzygapophysis" NARROW [ZFA:0000681]
synonym: "neural postzygopophysis" EXACT [ZFA:0000681]
synonym: "postzygapophysis" EXACT []
synonym: "processus articularis inferior" EXACT []
synonym: "processus obliquus posterior" RELATED [AAO:0000702]
synonym: "vertebra caudal articular process" EXACT []
xref: AAO:0000702
xref: FMA:11954
xref: MA:0001451
xref: SCTID:30079000
xref: TAO:0000681
xref: ZFA:0000681
property_value: UBPROP:0000001 "Paired, dorsomedially directed processes on the posterior ends of the centra, ligamentously joined to the neural prezygapophyses of the immediately posterior vertebra.[TAO]" xsd:string
is_a: UBERON:0006062 ! articular process of vertebra
[Term]
id: UBERON:0001081
name: endocardium of ventricle
def: "Endocardium that is part of the cardiac ventricle." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "cardiac ventricle endocardium" EXACT [OBOL:automatic]
synonym: "endocardium of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "endocardium of heart ventricle" EXACT [OBOL:automatic]
synonym: "endocardium of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "endocardium of ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart ventricle endocardium" EXACT [OBOL:automatic]
synonym: "lower chamber of heart endocardium" EXACT [OBOL:automatic]
synonym: "ventricle endocardium" EXACT []
synonym: "ventricle of heart endocardium" EXACT [OBOL:automatic]
synonym: "ventricular endocardium" EXACT []
xref: FMA:12148
xref: MA:0000079
xref: SCTID:192172004
xref: TAO:0002247
xref: VHOG:0000607
xref: ZFA:0001615
is_a: UBERON:0000487 ! simple squamous epithelium
is_a: UBERON:0002165 ! endocardium
relationship: part_of UBERON:0002082
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0001082
name: epicardium of ventricle
def: "The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space. Hu et al. 2001.." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "cardiac ventricle epicardium" EXACT [OBOL:automatic]
synonym: "cardiac ventricle heart epicardium" EXACT [OBOL:automatic]
synonym: "cardiac ventricle visceral serous pericardium of heart" EXACT [OBOL:automatic]
synonym: "epicardium of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "epicardium of heart ventricle" EXACT [OBOL:automatic]
synonym: "epicardium of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "epicardium of ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart epicardium of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "heart epicardium of heart ventricle" EXACT [OBOL:automatic]
synonym: "heart epicardium of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "heart epicardium of ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart ventricle epicardium" EXACT [OBOL:automatic]
synonym: "heart ventricle heart epicardium" EXACT [OBOL:automatic]
synonym: "heart ventricle visceral serous pericardium of heart" EXACT [OBOL:automatic]
synonym: "lower chamber of heart epicardium" EXACT [OBOL:automatic]
synonym: "lower chamber of heart heart epicardium" EXACT [OBOL:automatic]
synonym: "lower chamber of heart visceral serous pericardium of heart" EXACT [OBOL:automatic]
synonym: "ventricle of heart epicardium" EXACT [OBOL:automatic]
synonym: "ventricle of heart heart epicardium" EXACT [OBOL:automatic]
synonym: "ventricle of heart visceral serous pericardium of heart" EXACT [OBOL:automatic]
synonym: "ventricular epicardium" EXACT []
synonym: "visceral serous pericardium of heart of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "visceral serous pericardium of heart of heart ventricle" EXACT [OBOL:automatic]
synonym: "visceral serous pericardium of heart of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "visceral serous pericardium of heart of ventricle of heart" EXACT [OBOL:automatic]
xref: FMA:12150
xref: TAO:0005058
xref: ZFA:0005058
property_value: UBPROP:0000001 "The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space. Hu et al. 2001.[TAO]" xsd:string
is_a: UBERON:0002348 ! epicardium
relationship: part_of UBERON:0002082
intersection_of: UBERON:0002348 ! epicardium
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0001083
name: myocardium of ventricle
def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "cardiac muscle of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of ventricle of heart" EXACT [OBOL:automatic]
synonym: "cardiac ventricle cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac ventricle heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac ventricle heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac ventricle muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac ventricle myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle of heart ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "heart muscle of ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium of heart ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium of ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart ventricle cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart ventricle heart muscle" EXACT [OBOL:automatic]
synonym: "heart ventricle heart myocardium" EXACT [OBOL:automatic]
synonym: "heart ventricle muscle of heart" EXACT [OBOL:automatic]
synonym: "heart ventricle myocardium" EXACT [OBOL:automatic]
synonym: "lower chamber of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "lower chamber of heart heart muscle" EXACT [OBOL:automatic]
synonym: "lower chamber of heart heart myocardium" EXACT [OBOL:automatic]
synonym: "lower chamber of heart muscle of heart" EXACT [OBOL:automatic]
synonym: "lower chamber of heart myocardium" EXACT [OBOL:automatic]
synonym: "muscle of heart of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart of heart ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart of ventricle of heart" EXACT [OBOL:automatic]
synonym: "myocardium of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "myocardium of heart ventricle" EXACT [OBOL:automatic]
synonym: "myocardium of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "myocardium of ventricle of heart" EXACT [OBOL:automatic]
synonym: "ventricle myocardium" EXACT []
synonym: "ventricle of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "ventricle of heart heart muscle" EXACT [OBOL:automatic]
synonym: "ventricle of heart heart myocardium" EXACT [OBOL:automatic]
synonym: "ventricle of heart muscle of heart" EXACT [OBOL:automatic]
synonym: "ventricle of heart myocardium" EXACT [OBOL:automatic]
synonym: "ventricular myocardium" EXACT []
xref: EFO:0003088
xref: FMA:12151
xref: MA:0000082
xref: SCTID:192084000
xref: TAO:0005061
xref: VHOG:0000604
xref: ZFA:0005061
property_value: UBPROP:0000001 "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer Hu et al. 2001.[TAO]" xsd:string
is_a: UBERON:0002349 ! myocardium
relationship: part_of UBERON:0002082
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0001084
name: skin of head
def: "A zone of skin that is part of a head [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "adult head zone of skin" EXACT [OBOL:automatic]
synonym: "head skin" EXACT []
synonym: "head zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of adult head" EXACT [OBOL:automatic]
synonym: "zone of skin of head" EXACT [OBOL:automatic]
xref: FMA:12166
xref: FMA:24756
xref: MA:0000582
xref: ncithesaurus:Head_Skin
xref: SCTID:181484006
is_a: UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0000033
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0001085
name: skin of trunk
def: "A zone of skin that is part of a trunk [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "torso zone of skin" EXACT [OBOL:automatic]
synonym: "trunk skin" EXACT []
synonym: "trunk zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of torso" EXACT [OBOL:automatic]
synonym: "zone of skin of trunk" EXACT [OBOL:automatic]
xref: FMA:12167
xref: FMA:23093
xref: MA:0000517
xref: ncithesaurus:Skin_of_the_Trunk
xref: SCTID:181489001
is_a: UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0002100
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0001086
name: articular cartilage
comment: obsoleted as it conflated two distinct classes
is_obsolete: true
consider: UBERON:0010996
consider: UBERON:0011002
[Term]
id: UBERON:0001087
name: pleural fluid
def: "Transudate contained in the pleural cavity.[FMA]" [FMA:FMA, Wikipedia:Pleural_fluid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003080
xref: FMA:12273
xref: MA:0002532
xref: MAT:0000500
xref: ncithesaurus:Pleural_Fluid
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0002402
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: part_of UBERON:0002402 ! pleural cavity
relationship: part_of UBERON:0002402 ! pleural cavity
[Term]
id: UBERON:0001088
name: urine
def: "Excretion in liquid state processed by the kidney.[FMA]" [FMA:FMA, Wikipedia:Urine]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001419
xref: EFO:0001939
xref: ENVO:00002047
xref: FMA:12274
xref: GAID:1189
xref: galen:Urine
xref: MA:0002545
xref: MAT:0000058
xref: MESH:A.12.207.927
xref: MIAA:0000058
xref: ncithesaurus:Urine
xref: OpenCyc:Mx4rvVjGppwpEbGdrcN5Y29ycA
is_a: UBERON:0000174 ! excreta
[Term]
id: UBERON:0001089
name: sweat
def: "Secretion produced by a sweat gland.[FMA]" [FMA:FMA, Wikipedia:Sweat]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "skin exudate" RELATED [BTO:0001254]
xref: BTO:0001254
xref: ENVO:02000025
xref: FMA:12275
xref: GAID:1172
xref: MA:0002539
xref: MESH:A.12.200.849
xref: ncithesaurus:Sweat
xref: OpenCyc:Mx4rvVjJtZwpEbGdrcN5Y29ycA
is_a: UBERON:0000456 ! bodily secretion
[Term]
id: UBERON:0001090
name: synovial fluid
def: "Transudate contained in the synovial cavity of joints, and in the cavity of tendon sheaths and bursae.[FMA]" [FMA:FMA, Wikipedia:Synovial_fluid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "joint fluid" EXACT []
xref: BTO:0001339
xref: ENVO:02000039
xref: FMA:12277
xref: GAID:265
xref: galen:SynovialFluid
xref: MA:0002544
xref: MESH:A.02.835.583.443.800.800
xref: ncithesaurus:Synovial_Fluid
xref: TAO:0005154
xref: ZFA:0005154
property_value: UBPROP:0000001 "Portion of organism substance that is a clear fluid that occupies the space in synovial joints.[TAO]" xsd:string
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0007617 ! synovial cavity of joint
[Term]
id: UBERON:0001091
name: calcareous tooth
def: "Organ with a cavity which consist of dentine surrounded by enamel. Examples: incisor, molar." [FMA:12516, Wikipedia:Tooth, Wikipedia:Tooth_(animal)]
comment: Editors note: we place ZFA ctb 5 tooth here for now. This will eventually belong in phenoscape_ext.
subset: uberon_slim
subset: vertebrate_core
synonym: "dentine containing tooth" EXACT []
synonym: "tooth" EXACT []
synonym: "vertebrate tooth" EXACT []
xref: AEO:0000220
xref: BTO:0000397
xref: EFO:0000839
xref: EHDAA2:0004605
xref: EHDAA:8009
xref: EHDAA:8045
xref: EV:0100063
xref: FMA:12516
xref: GAID:1260
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Teeth_by_David_Shankbone.jpg/200px-Teeth_by_David_Shankbone.jpg
xref: MA:0000348
xref: MAT:0000041
xref: MESH:A.14.254.860
xref: MIAA:0000041
xref: ncithesaurus:Tooth
xref: OpenCyc:Mx4rvVjUEZwpEbGdrcN5Y29ycA
xref: SCTID:302214001
xref: TAO:0001625
xref: VHOG:0000127
xref: VHOG:0001733
xref: XAO:0000431
xref: ZFA:0000694
property_value: RO:0002161 NCBITaxon:8782
is_a: UBERON:0003913 ! tooth-like structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0005087 {evidence="definitional"} ! tooth placode
relationship: has_developmental_contribution_from UBERON:0000930 {source="XAO-modified"} ! stomodeum
relationship: has_developmental_contribution_from UBERON:0005176 {source="ZFA-modified"} ! tooth enamel organ
relationship: has_part UBERON:0001751 ! dentine
relationship: has_part UBERON:0001752 ! enamel
relationship: part_of UBERON:0000165 ! mouth
relationship: part_of UBERON:0000166 ! oral opening
[Term]
id: UBERON:0001092
name: first cervical vertebra
def: "." [Wikipedia:Atlas_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "atlas" EXACT []
synonym: "Atlas (CI)" EXACT []
synonym: "C1" BROAD []
synonym: "C1 vertebra" EXACT []
synonym: "cervical atlas" EXACT [MP:0011576]
synonym: "cervical vertebra 1" EXACT []
xref: AAO:0000709
xref: EHDAA:10606
xref: FMA:12519
xref: GAID:236
xref: MA:0001421
xref: MESH:A.02.835.232.834.151.213
xref: ncithesaurus:C1_Vertebra
xref: TAO:0001167
xref: ZFA:0001167
property_value: UBPROP:0000001 "First postcranial vertebra, which is modified anteriorly to articulate with the skull.[AAO]" xsd:string
property_value: UBPROP:0000001 "Vertebra that is posteriorly adjacent to the neurocranium.[TAO]" xsd:string
property_value: "vertebra_number" "1" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra
relationship: anterior_to UBERON:0001093 ! second cervical vertebra
relationship: anteriorly_connected_to UBERON:0001676 {source="FMA", gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! occipital bone
[Term]
id: UBERON:0001093
name: second cervical vertebra
def: "second cervical vertebra (C2) of the spine." [Wikipedia:Axis_(anatomy)]
comment: note: not the same as ZFA term 'axis'
subset: uberon_slim
subset: vertebrate_core
synonym: "axis" RELATED INCONSISTENT [MA:0001422]
synonym: "axis (CII)" EXACT []
synonym: "C2" BROAD []
synonym: "C2 vertebra" EXACT []
synonym: "cervical axis" EXACT [MP:0004608]
synonym: "cervical vertebra 2" EXACT [MA:0001422]
synonym: "vertebra 2" EXACT [ZFA:0001168]
xref: EHDAA:10608
xref: FMA:12520
xref: GAID:237
xref: MA:0001422
xref: MESH:A.02.835.232.834.151.383
xref: ncithesaurus:C2_Vertebra
xref: OpenCyc:Mx4rv-zaJJwpEbGdrcN5Y29ycA
xref: TAO:0001168
xref: ZFA:0001168
property_value: UBPROP:0000001 "Vertebra that is posteriorly adjacent to vertebra 1.[TAO]" xsd:string
property_value: "vertebra_number" "2" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra
relationship: anteriorly_connected_to UBERON:0001092 {source="FMA"} ! first cervical vertebra
[Term]
id: UBERON:0001094
name: sacral vertebra
subset: uberon_slim
synonym: "sacral segment" EXACT []
synonym: "segment of sacrum" EXACT []
xref: EMAPA:18336
xref: FMA:12526
xref: galen:SacralVertebra
xref: MA:0000313
xref: ncithesaurus:Sacral_Vertebra
xref: OpenCyc:Mx4rv-ZsXpwpEbGdrcN5Y29ycA
xref: SCTID:361773005
xref: XAO:0003078
is_a: UBERON:0002412 ! vertebra
is_a: UBERON:0003828 ! abdominal segment bone
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0005179 ! pelvis organ
relationship: part_of UBERON:0006075
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0006075 ! sacral region of vertebral column
relationship: develops_from UBERON:0010745 ! sacral vertebra cartilage condensation
relationship: part_of UBERON:0006075 ! sacral region of vertebral column
[Term]
id: UBERON:0001095
name: caudal vertebra
def: "bones in the tails or coccyx of mammals. In zebrafish: Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae." [Wikipedia:Caudal_vertebra, ZFIN:curator]
subset: uberon_slim
subset: vertebrate_core
synonym: "caudal vertebrae" EXACT PLURAL []
synonym: "tail vertebra" RELATED [MA:0000310]
xref: EMAPA:18374
xref: MA:0000310
xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA
xref: TAO:0000326
xref: XAO:0003079
xref: ZFA:0000326
property_value: UBPROP:0000001 "Vertebrae bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae.[TAO]" xsd:string
is_a: UBERON:0002412 ! vertebra
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004247 ! back bone
relationship: part_of UBERON:0006076
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0006076 ! caudal region of vertebral column
relationship: part_of UBERON:0006076 ! caudal region of vertebral column
[Term]
id: UBERON:0001096
name: wall of esophagus
def: "An anatomical wall that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of esophagus" EXACT [OBOL:automatic]
synonym: "anatomical wall of gullet" EXACT [OBOL:automatic]
synonym: "anatomical wall of oesophagus" EXACT [OBOL:automatic]
synonym: "esophageal wall" EXACT []
synonym: "esophagus anatomical wall" EXACT [OBOL:automatic]
synonym: "esophagus wall" EXACT []
synonym: "gullet anatomical wall" EXACT [OBOL:automatic]
synonym: "gullet wall" EXACT [OBOL:automatic]
synonym: "oesophagus anatomical wall" EXACT [OBOL:automatic]
synonym: "oesophagus wall" EXACT [OBOL:automatic]
synonym: "wall of gullet" EXACT [OBOL:automatic]
synonym: "wall of oesophagus" EXACT [OBOL:automatic]
xref: FMA:12611
xref: MA:0002691
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0001097
name: axillary lymph node
def: "The Axillary lymph nodes are of large size, vary from twenty to thirty in number, and may be arranged in the following groups: brachial lymph nodes (or 'lateral') pectoral axillary lymph nodes (or 'anterior') subscapular axillary lymph nodes (or 'posterior') central lymph nodes apical lymph nodes (or 'medial' or 'subclavicular') [WP,unvetted]." [Wikipedia:Axillary_lymph_node, Wikipedia:Axillary_lymph_nodes]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "axillary node" EXACT []
synonym: "nodi lymphoidei axillares" RELATED LATIN [Wikipedia:Axillary_lymph_nodes]
xref: FMA:12771
xref: http://upload.wikimedia.org/wikipedia/commons/7/73/Gray607.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray607.png/200px-Gray607.png
xref: MA:0000735
xref: ncithesaurus:Axillary_Lymph_Node
xref: SCTID:181759007
is_a: UBERON:0003968 ! peripheral lymph node
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001098
name: incisor tooth
def: "Incisors are the first kind of tooth in heterodont mammals. They are located in the premaxilla above and mandible below. [WP,unvetted]." [Wikipedia:Incisor_tooth]
comment: Humans normally have eight (8) incisors; Among other animals, some other primates, cats and horses have twelve. Rodents have four, while Foxes have nine. Rabbits and hares (lagomorphs) were once considered rodents, but are distinguished by having eight — one small pair, called 'peg teeth', is located directly behind the most anterior pair. Incisors are used to bite off tough foods, such as red meat
subset: uberon_slim
synonym: "incisor" EXACT [MA:0000349]
xref: BTO:0001741
xref: EHDAA:8011
xref: EHDAA:8047
xref: FMA:12823
xref: GAID:1263
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Gray997.png/200px-Gray997.png
xref: MA:0000349
xref: MESH:A.14.254.860.425
xref: ncithesaurus:Incisor
xref: OpenCyc:Mx4rwP1ch5wpEbGdrcN5Y29ycA
xref: SCTID:420856006
is_a: UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0003672 ! dentition
[Term]
id: UBERON:0001099
name: subcostal vein
def: "The subcostal vein is a vein in the human body that runs along the bottom of the twelfth rib. It has the same essential qualities as the posterior intercostal veins, except that it cannot be considered intercostal because it is not between two ribs. Each subcostal vein gives off a posterior (dorsal) branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]." [Wikipedia:Subcostal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vena subcostalis" RELATED LATIN [Wikipedia:Subcostal_vein]
xref: FMA:12845
xref: MA:0002222
xref: ncithesaurus:Subcostal_Vein
xref: SCTID:25248001
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001100
name: pectoralis minor
def: "The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]." [Wikipedia:Pectoralis_minor_muscle]
subset: organ_slim
subset: uberon_slim
synonym: "musculus pectoralis minor" RELATED LATIN [Wikipedia:Pectoralis_minor_muscle]
synonym: "pectoralis minor muscle" EXACT []
synonym: "supracoracoideus" NARROW SENSU []
synonym: "supracoracoideus muscle" NARROW SENSU []
xref: EHDAA2:0001425
xref: EHDAA:8313
xref: EMAPA:18180
xref: FMA:13109
xref: http://upload.wikimedia.org/wikipedia/commons/5/5d/Pectoralis_minor.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Pectoralis_minor.png/200px-Pectoralis_minor.png
xref: MA:0002355
xref: ncithesaurus:Pectoralis_Minor
xref: SCTID:181625002
xref: VHOG:0000902
is_a: UBERON:0001495 {source="FMA"} ! pectoral muscle
relationship: has_muscle_insertion UBERON:0007174 {notes="medial border and superior surface of the coracoid process of the scapula", source="dbpedia"} ! medial part of scapula
relationship: has_muscle_origin UBERON:0002228 {notes="third to fifth ribs near their costal cartilages", source="dbpedia"} ! rib
[Term]
id: UBERON:0001101
name: external jugular vein
def: "The external jugular vein receives the greater part of the blood from the exterior of the cranium and the deep parts of the face, being formed by the junction of the posterior division of the posterior facial with the posterior auricular vein. [WP,unvetted]." [Wikipedia:External_jugular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "external jugular" EXACT [EHDAA2:0000468]
synonym: "external jugular venous tree" EXACT []
synonym: "vena jugularis externa" RELATED LATIN [Wikipedia:External_jugular_vein]
xref: AAO:0010508
xref: EHDAA2:0000468
xref: EHDAA:9887
xref: EMAPA:17875
xref: FMA:13110
xref: galen:ExternalJugularVein
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002156
xref: ncithesaurus:External_Jugular_Vein
xref: OpenCyc:Mx4rvrm0c5wpEbGdrcN5Y29ycA
xref: SCTID:181373000
xref: XAO:0000379
property_value: UBPROP:0000001 "Vein which collects blood from the muscles of the head and tongue and the thyroid gland.[AAO]" xsd:string
is_a: UBERON:0004711 ! jugular vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
[Term]
id: UBERON:0001102
name: cartilage of main bronchus
def: "A cartilage that is part of a main bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchus principalis cartilage" EXACT [OBOL:automatic]
synonym: "cartilage of bronchus principalis" EXACT [OBOL:automatic]
synonym: "cartilage of primary bronchus" EXACT [OBOL:automatic]
synonym: "cartilage of principal bronchus" EXACT [OBOL:automatic]
synonym: "cartilaginous ring of main bronchus" EXACT [EMAPA:19092]
synonym: "main bronchial cartilage" EXACT []
synonym: "main bronchus cartilage" EXACT []
synonym: "primary bronchus cartilage" EXACT [OBOL:automatic]
synonym: "principal bronchus cartilage" EXACT [OBOL:automatic]
xref: EMAPA:19092
xref: FMA:13117
xref: MA:0001846
is_a: UBERON:0001956 ! cartilage of bronchus
is_a: UBERON:0003590 ! main bronchus connective tissue
relationship: part_of UBERON:0002182
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0001103
name: diaphragm
def: "The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs[GO]." [GO:0060539, Wikipedia:Thoracid_diaphragm]
comment: The existence of some membrane separating the pharynx from the stomach can be traced widely among the chordates. Thus amphioxus possesses an atrium by which water exits the pharynx, which has been argued (and disputed) to be homologous to structures in ascidians and hagfishes.[3] The urochordate epicardium separates digestive organs from the pharynx and heart, but the anus returns to the upper compartment to discharge wastes through an outgoing siphon (Thoracic_diaphragm#Comparative_anatomy_and_evolution)
subset: organ_slim
subset: uberon_slim
synonym: "diaphragm muscle" EXACT [BTO:0000341]
synonym: "midriff" RELATED [BTO:0000341]
synonym: "phren" RELATED [BTO:0000341]
synonym: "thoracic diaphragm" EXACT []
xref: BTO:0000341
xref: EFO:0000937
xref: EHDAA2:0003495
xref: EMAPA:17701
xref: EV:0100376
xref: FMA:13295
xref: GAID:158
xref: MA:0001904
xref: MAT:0000502
xref: MESH:A.02.633.567.900.300
xref: ncithesaurus:Diaphragm
xref: OpenCyc:Mx4rvVivz5wpEbGdrcN5Y29ycA
xref: SCTID:181614006
xref: VHOG:0000713
property_value: RO:0002161 NCBITaxon:8782
is_a: UBERON:0002426 ! chest muscle
is_a: UBERON:0003831 ! respiratory system muscle
is_a: UBERON:0003898 ! skeletal muscle of trunk
is_a: UBERON:0004830 ! respiratory system skeletal muscle
relationship: develops_from UBERON:0010084 {evidence="definitional"} ! future diaphragm
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0001104
name: anterior jugular vein
def: "The anterior jugular vein begins near the hyoid bone by the confluence of several superficial veins from the submaxillary region. It descends between the median line and the anterior border of the Sternocleidomastoideus, and, at the lower part of the neck, passes beneath that muscle to open into the termination of the external jugular, or, in some instances, into the subclavian vein. It varies considerably in size, bearing usually an inverse proportion to the external jugular; most frequently there are two anterior jugulars, a right and left; but sometimes only one. Its tributaries are some laryngeal veins, and occasionally a small thyroid vein. Just above the sternum the two anterior jugular veins communicate by a transverse trunk, the venous jugular arch, which receive tributaries from the inferior thyroid veins; each also communicates with the internal jugular. There are no valves in this vein. [WP,unvetted]." [Wikipedia:Anterior_jugular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior external jugular vein" EXACT []
synonym: "vena jugularis anterior" RELATED LATIN [Wikipedia:Anterior_jugular_vein]
xref: FMA:13318
xref: http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Gray558.png/200px-Gray558.png
xref: MA:0002155
xref: ncithesaurus:Anterior_Jugular_Vein
xref: SCTID:65478008
is_a: UBERON:0004711 ! jugular vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
[Term]
id: UBERON:0001105
name: clavicle
def: "In human anatomy, the clavicle or collar bone is classified as a flat bone that makes up part of the shoulder girdle. It receives its name from the Latin clavicula ('little key') because the bone rotates along its axis like a key when the shoulder is abducted. This movement is palpable. In some people, particularly females who may have less fat in this region, the location of the bone is clearly visible as it creates a bulge in the skin. [WP,unvetted]." [Wikipedia:Clavicle]
comment: Taxon notes: The clavicle first appears as part of the skeleton in primitive bony fish, where it is associated with the pectoral fin; they also have a bone called the cleithrum. In such fish, the paired clavicles run behind and below the gills on each side, and are joined by a solid symphysis on the fish's underside. They are, however, absent in cartilagenous fish and in the vast majority of living bony fish, including all of the teleosts[ISBN 0-03-910284-X] AO Notes: FMA and MA differ in whether they consider this part of the shoulder. Development notes: In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4]
subset: uberon_slim
synonym: "clavicle bone" EXACT [VSAO:0005031]
synonym: "clavicula" EXACT [VSAO:0005031]
synonym: "collar bone" EXACT []
xref: AAO:0000761
xref: EMAPA:18721
xref: FMA:13321
xref: GAID:182
xref: galen:Clavicle
xref: http://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Pectoral_girdles-en.svg/200px-Pectoral_girdles-en.svg.png
xref: MA:0001329
xref: MESH:A.02.835.232.087.227
xref: ncithesaurus:Clavicle
xref: OpenCyc:Mx4rvVjijZwpEbGdrcN5Y29ycA
xref: SCTID:181910004
xref: VHOG:0000849
xref: VSAO:0005031
property_value: UBPROP:0000001 "Slender, paired bones of intramembranous origin that invest the anterior margins of the procoracoids.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of zonal element (AAO:0000936)[AAO]" xsd:string
is_a: UBERON:0002495 {source="FMA"} ! long bone
is_a: UBERON:0003461 {source="MA"} ! shoulder bone
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: connected_to UBERON:0000975 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! sternum
relationship: develops_from UBERON:0010905 {editor="mah", source="ISBN:978-0-12-319060-4"} ! clavicle bone primordium
relationship: has_developmental_contribution_from UBERON:0010843 {source="ISBN:978-0-12-319060-4", notes="from secondary cartilage of fusion"} ! clavicle cartilaginous condensation
relationship: part_of UBERON:0007831 {source="FMA", source="VSAO"} ! skeleton of pectoral girdle
[Term]
id: UBERON:0001106
name: cephalic vein
def: "In human anatomy, the cephalic vein is a superficial vein of the upper limb. It is also called the antecubital vein. It communicates with the basilic vein via the median cubital vein at the elbow and is located in the superficial fascia along the anterolateral surface of the biceps brachii muscle. Superiorly the cephalic vein passes between the deltoid and pectoralis major muscles and through the deltopectoral triangle, where it empties into the axillary vein. It is often visible through the skin, and its location in the deltopectoral groove is fairly consistent, making this site a good candidate for cannulation. It is often referred to as the 'House-man's Friend' for this reason and is generally a good place for cannulaton when a large bore cannula needs to be sited. [WP,unvetted]." [Wikipedia:Cephalic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cephalic vein of forearm" EXACT []
synonym: "vena cephalica" RELATED LATIN [Wikipedia:Cephalic_vein]
synonym: "vena cephalica antebrachii" EXACT [FMA:13324, FMA:TA]
xref: EMAPA:25075
xref: FMA:13324
xref: galen:CephalicVein
xref: http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png
xref: MA:0002092
xref: ncithesaurus:Cephalic_Vein
xref: OpenCyc:Mx4rwTpbQZwpEbGdrcN5Y29ycA
xref: SCTID:181391005
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003507 ! arm blood vessel
relationship: part_of UBERON:0001460 ! arm
relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
[Term]
id: UBERON:0001107
name: sternohyoid
def: "The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]." [Wikipedia:Sternohyoid_muscle]
comment: AO notes: Note that as defined here, this structure attaches to the sternum, which is a tetrapod structure. TAO has class 'sternohyoid' as part of mandibular muscle, but no sternum, so excluded here. The TAO/ZFA class has no definition, but the dictionary of icthyology states: "a large muscle originating on the ventral spine of the postcleithrum and inserting on the sides of the urohyal. It functions in rapid opening of the jaw and expanding the buccal cavity" - a generic way of grouping these is via a hyoid - girdle connection
subset: uberon_slim
subset: vertebrate_core
synonym: "musculus sternohyoideus" RELATED LATIN [Wikipedia:Sternohyoid_muscle]
synonym: "sternohyoid muscle" RELATED [Wikipedia:Sternohyoid_muscle]
synonym: "sternohyoidei" RELATED [Wikipedia:Sternohyoid_muscle]
synonym: "sternohyoideus" RELATED [Wikipedia:Sternohyoid_muscle]
synonym: "sternohyoideus muscle" RELATED [Wikipedia:Sternohyoid_muscle]
xref: EMAPA:19271
xref: FMA:13341
xref: http://upload.wikimedia.org/wikipedia/commons/6/67/Sternohyoid_muscle.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Sternohyoid_muscle.PNG/200px-Sternohyoid_muscle.PNG
xref: MA:0002383
xref: ncithesaurus:Sternohyoid
xref: SCTID:244830003
property_value: UBPROP:0000001 "The sternohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the hyoid appratus and the sternum.[FEED]" xsd:string
is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle
relationship: has_muscle_insertion UBERON:0001685 {source="dbpedia"} ! hyoid bone
relationship: has_muscle_nerve UBERON:0005430 {source="dbpedia"} ! ansa cervicalis
relationship: has_muscle_origin UBERON:0002205 {source="dbpedia", notes="manubrium of sternum"} ! manubrium of sternum
[Term]
id: UBERON:0001108
name: omohyoid
def: "The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]." [Wikipedia:Omohyoid_muscle]
comment: interior and superior belly
subset: uberon_slim
synonym: "musculus omohyoideus" RELATED LATIN [Wikipedia:Omohyoid_muscle]
synonym: "omohyoid muscle" EXACT []
synonym: "omohyoideus" EXACT [Wikipedia:Omohyoid_muscle]
synonym: "omohyoideus muscle" EXACT [Wikipedia:Omohyoid_muscle]
xref: FMA:13342
xref: http://upload.wikimedia.org/wikipedia/commons/b/b0/Gray1210.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b0/Gray1210.png/200px-Gray1210.png
xref: MA:0002348
xref: ncithesaurus:Omohyoid
xref: SCTID:244833001
property_value: UBPROP:0000001 "The omohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the hyoid appratus and the scapula.[FEED]" xsd:string
is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle
relationship: has_muscle_insertion UBERON:0001685 {source="dbpedia"} ! hyoid bone
relationship: has_muscle_nerve UBERON:0005430 {source="dbpedia"} ! ansa cervicalis
[Term]
id: UBERON:0001109
name: sternothyroid
def: "The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]." [Wikipedia:Sternothyroid_muscle]
subset: uberon_slim
synonym: "musculus sternothyroideus" RELATED LATIN [Wikipedia:Sternothyroid_muscle]
synonym: "sterno-thyroideus" RELATED [Wikipedia:Sternothyroid_muscle]
synonym: "sternothyreoidei" RELATED PLURAL [Wikipedia:Sternothyroid_muscle]
synonym: "sternothyreoideus" RELATED [Wikipedia:Sternothyroid_muscle]
synonym: "sternothyroid muscle" EXACT []
synonym: "sternothyroideus" RELATED [Wikipedia:Sternothyroid_muscle]
xref: EMAPA:19272
xref: FMA:13343
xref: http://upload.wikimedia.org/wikipedia/commons/1/10/Sternothyroideus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/10/Sternothyroideus.png/200px-Sternothyroideus.png
xref: MA:0002386
xref: ncithesaurus:Sternothyroid
xref: SCTID:244831004
property_value: UBPROP:0000001 "The sternothyroid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the thyroid cartilage and the sternum.[FEED]" xsd:string
is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle
relationship: has_muscle_insertion UBERON:0001738 {source="dbpedia"} ! thyroid cartilage
relationship: has_muscle_nerve UBERON:0005430 {source="dbpedia"} ! ansa cervicalis
relationship: has_muscle_origin UBERON:0002205 {source="dbpedia"} ! manubrium of sternum
[Term]
id: UBERON:0001110
name: thyrohyoid muscle
def: "The thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]." [Wikipedia:Thyrohyoid_muscle]
subset: uberon_slim
synonym: "musculus thyrohyoideus" RELATED LATIN [Wikipedia:Thyrohyoid_muscle]
synonym: "thyreohyoideus" RELATED [Wikipedia:Thyrohyoid_muscle]
synonym: "thyreohyoideus muscle" RELATED [Wikipedia:Thyrohyoid_muscle]
synonym: "thyrohyoid" EXACT [Wikipedia:Thyrohyoid_muscle]
synonym: "thyrohyoideus" RELATED [Wikipedia:Thyrohyoid_muscle]
xref: EMAPA:19273
xref: EMAPA:25143
xref: FMA:13344
xref: http://upload.wikimedia.org/wikipedia/commons/a/aa/Thyrohyoid_muscle.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Thyrohyoid_muscle.PNG/200px-Thyrohyoid_muscle.PNG
xref: MA:0002393
xref: ncithesaurus:Thyrohyoid
xref: SCTID:244832006
property_value: UBPROP:0000001 "The thyrohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by C1 and Cranial Nerve XII ; it attaches to the thyroid cartilage and the hyoid apparatus.[FEED]" xsd:string
is_a: UBERON:0008523 {source="FMA"} ! infrahyoid muscle
relationship: has_muscle_insertion UBERON:0001685 {source="dbpedia"} ! hyoid bone
relationship: has_muscle_nerve UBERON:0000962 {notes="first cervical nerve via hypoglossal nerve", source="dbpedia"} ! cervical nerve
relationship: has_muscle_nerve UBERON:0001650 {notes="first cervical nerve via hypoglossal nerve", source="dbpedia"} ! hypoglossal nerve
[Term]
id: UBERON:0001111
name: intercostal muscle
def: "Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]." [Wikipedia:Intercostal_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intercostales" RELATED []
xref: EFO:0001368
xref: EHDAA2:0000841
xref: EHDAA:5988
xref: FMA:13354
xref: GAID:159
xref: http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png
xref: MA:0002324
xref: MESH:A.02.633.567.900.500
xref: ncithesaurus:Intercostal_Muscle
xref: OpenCyc:Mx4rwQo8QJwpEbGdrcN5Y29ycA
xref: SCTID:181746004
xref: VHOG:0000903
is_a: UBERON:0002426 {source="FMA"} ! chest muscle
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass
relationship: has_muscle_insertion UBERON:0002228 {source="dbpedia", notes="ribs 2-12"} ! rib
relationship: has_muscle_nerve UBERON:0003727 {source="dbpedia"} ! intercostal nerve
relationship: has_muscle_origin UBERON:0002228 {notes="ribs 1-11", source="dbpedia"} ! rib
[Term]
id: UBERON:0001112
name: latissimus dorsi muscle
def: "The latissimus dorsi is the larger, flat, dorso-lateral muscle on the trunk, posterior to the arm, and partly covered by the trapezius on its median dorsal region. [WP,unvetted]." [Wikipedia:Latissimus_dorsi_muscle]
subset: uberon_slim
synonym: "latissimus dorsi" EXACT []
synonym: "musculus latissimus dorsi" EXACT []
synonym: "musculus latissimus dorsi" RELATED LATIN [Wikipedia:Latissimus_dorsi_muscle]
xref: EFO:0003067
xref: EHDAA2:0000932
xref: EHDAA:8307
xref: EMAPA:18178
xref: FMA:13357
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/Latissimus_dorsi.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Latissimus_dorsi.png/200px-Latissimus_dorsi.png
xref: MA:0002331
xref: ncithesaurus:Musculus_Latissimus_Dorsi
xref: SCTID:181747008
xref: VHOG:0000930
is_a: UBERON:0001482 ! muscle of shoulder
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010982 {source="EHDAA2"} ! latissimus dorsi pre-muscle mass
relationship: has_muscle_antagonist UBERON:0001476 {source="dbpedia"} ! deltoid
relationship: has_muscle_antagonist UBERON:0002380 {source="dbpedia"} ! trapezius
relationship: has_muscle_insertion UBERON:0000976 {notes="floor of intertubercular groove of the humerus", source="dbpedia"} ! humerus
relationship: has_muscle_origin UBERON:0007175 {source="dbpedia", notes="spinous processes of thoracic T7-T12 thoracolumbar fascia iliac crest and inferior 3 or 4 ribs inferior angle of scapula"} ! inferior angle of scapula
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle
[Term]
id: UBERON:0001113
name: lobe of liver
def: "Traditional gross anatomy divided the liver into four lobes based on surface features. The falciform ligament is visible on the front (anterior side) of the liver. This divides the liver into a left anatomical lobe, and a right anatomical lobe." [Wikipedia:Liver#Lobes]
comment: editor note: some work needs to be done to ensure the child terms of this class have correct isa/partof placement. in MA they are subclasses, in FMA they are parts
synonym: "hepatic lobe" EXACT []
synonym: "liver lobe" EXACT []
synonym: "lobus hepatis" EXACT []
xref: EMAPA:18306
xref: FMA:13361
xref: MA:0000360
xref: ncithesaurus:Liver_Lobe
xref: SCTID:245378000
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001114
name: right lobe of liver
def: "The right lobe is much larger than the left; the proportion between them being as six to one. It occupies the right hypochondrium, and is separated from the left lobe on its upper surface by the falciform ligament; on its under and posterior surfaces by the left sagittal fossa; and in front by the umbilical notch. It is of a somewhat quadrilateral form, its under and posterior surfaces being marked by three fossæ: the porta and the fossæ for the gall-bladder and inferior vena cava, which separate its left part into two smaller lobes; the quadrate and caudate lobes. [WP,unvetted]." [Wikipedia:Right_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "gall bladder lobe" RELATED SENSU [ZFA:0005173]
synonym: "liver right lobe" EXACT []
synonym: "lobus hepatis dexter" RELATED LATIN [Wikipedia:Right_lobe_of_liver]
synonym: "right liver lobe" EXACT [ZFA:0005173]
xref: EHDAA2:0001008
xref: EHDAA:4001
xref: EMAPA:18311
xref: FMA:13362
xref: http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000363
xref: ncithesaurus:Right_Lobe_of_the_Liver
xref: SCTID:362182008
xref: TAO:0005173
xref: VHOG:0001424
xref: ZFA:0005173
property_value: UBPROP:0000001 "Portion of the liver which develops on the fish's right side adjacent to the gall bladder.[TAO]" xsd:string
is_a: UBERON:0001113 ! lobe of liver
[Term]
id: UBERON:0001115
name: left lobe of liver
def: "The left lobe is smaller and more flattened than the right. It is situated in the epigastric and left hypochondriac regions. Its upper surface is slightly convex and is moulded on to the diaphragm; its under surface presents the gastric impression and omental tuberosity. [WP,unvetted]." [Wikipedia:Left_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "left liver lobe" EXACT []
synonym: "liver left lobe" EXACT []
synonym: "lobus hepatis sinister" RELATED LATIN [Wikipedia:Left_lobe_of_liver]
xref: EHDAA2:0001000
xref: EHDAA:3995
xref: EMAPA:18307
xref: FMA:13363
xref: http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000361
xref: ncithesaurus:Left_Lobe_of_the_Liver
xref: SCTID:362183003
xref: TAO:0005172
xref: VHOG:0001423
xref: ZFA:0005172
property_value: UBPROP:0000001 "Portion of the liver which develops on the fish's left side.[TAO]" xsd:string
is_a: UBERON:0001113 ! lobe of liver
[Term]
id: UBERON:0001116
name: quadrate lobe of liver
def: "The quadrate lobe is an area of the liver situated on the under surface of the right lobe, bounded in front by the anterior margin of the liver; behind by the porta hepatis; on the right, by the fossa for the gall-bladder; and on the left, by the fossa for the umbilical vein. It is oblong in shape, its antero-posterior diameter being greater than its transverse. [WP,unvetted]." [Wikipedia:Quadrate_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "liver quadrate lobe" EXACT []
synonym: "lobus quadratus" EXACT []
synonym: "lobus quadratus" RELATED LATIN [Wikipedia:Quadrate_lobe_of_liver]
xref: EHDAA2:0001012
xref: EHDAA:8082
xref: EMAPA:18318
xref: FMA:13364
xref: http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000365
xref: ncithesaurus:Lobus_Quadratus
xref: SCTID:279929003
xref: VHOG:0000509
is_a: UBERON:0001114 ! right lobe of liver
[Term]
id: UBERON:0001117
name: caudate lobe of liver
def: "The caudate lobe (posterior hepatic segment I, Spigelian lobe) is situated upon the postero-superior surface of the liver on the right lobe of the liver, opposite the tenth and eleventh thoracic vertebrae. It is bounded on the left side by the physiological division of the liver called the ligamentum venosum. It is bounded, below, by the porta; on the right, by the fossa for the inferior vena cava; and, on the left, by the fossa for the ductus venosus. It looks backward, being nearly vertical in position; it is longer from above downward than from side to side, and is somewhat concave in the transverse direction. The caudate process is a small elevation of the hepatic substance extending obliquely and laterally, from the lower extremity of the caudate lobe to the under surface of the right lobe. It is situated behind the porta, and separates the fossa for the gall-bladder from the commencement of the fossa for the inferior vena cava. Budd-Chiari syndrome, caused by occlusion of hepatic venous outflow, can lead to hypertrophy of the caudate lobe due to its own caval anastomosis that allows for continued function of this lobe of the liver. [WP,unvetted]." [Wikipedia:Caudate_lobe_of_liver]
comment: Editor/taxon notes: Check left vs right in mouse and human
subset: uberon_slim
synonym: "couinaud hepatic segment i" EXACT [FMA:13365]
synonym: "hepatovenous segment i" EXACT []
synonym: "liver caudate lobe" EXACT []
synonym: "liver caudate process" RELATED []
synonym: "lobus caudatus" EXACT []
synonym: "pars posterior hepatis" EXACT [FMA:13365, FMA:TA]
synonym: "posterior hepatic segment i" EXACT []
synonym: "posterior liver" EXACT []
synonym: "posterior part of liver" EXACT []
synonym: "segment hepatis posterius I, lobus caudatus" RELATED LATIN [Wikipedia:Caudate_lobe_of_liver]
synonym: "segment i of liver" EXACT []
synonym: "segmentum hepatis i" EXACT [FMA:13365, FMA:TA]
synonym: "spiegelian lobe" EXACT []
synonym: "spigel lobe" EXACT []
xref: EHDAA2:0001005
xref: EHDAA:6990
xref: EMAPA:18313
xref: FMA:13365
xref: http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000364
xref: ncithesaurus:Lobus_Caudatus
xref: SCTID:362184009
xref: VHOG:0000508
is_a: UBERON:0001114 {source="MA"} ! right lobe of liver
relationship: part_of UBERON:0001115 {source="FMA"} ! left lobe of liver
[Term]
id: UBERON:0001118
name: lobe of thyroid gland
def: "The lobes of the thyroid gland are conical in shape, the apex of each being directed upward and lateralward as far as the junction of the middle with the lower third of the thyroid cartilage; the base looks downward, and is on a level with the fifth or sixth tracheal ring. Each lobe is about 5 cm. long; its greatest width is about 3 cm. , and its thickness about 2 cm. The lateral or superficial surface is convex, and covered by the skin, the superficial and deep fasciæ, the Sternocleidomastoideus, the superior belly of the Omohyoideus, the Sternohyoideus and Sternothyreoideus, and beneath the last muscle by the pretracheal layer of the deep fascia, which forms a capsule for the gland. The deep or medial surface is moulded over the underlying structures, viz. , the thyroid and cricoid cartilages, the trachea, the Constrictor pharyngis inferior and posterior part of the Cricothyreoideus, the esophagus (particularly on the left side of the neck), the superior and inferior thyroid arteries, and the recurrent nerves. The anterior border is thin, and inclines obliquely from above downward toward the middle line of the neck, while the posterior border is thick and overlaps the common carotid artery, and, as a rule, the parathyroids. [WP,unvetted]." [Wikipedia:Lobes_of_thyroid_gland]
comment: This class was created automatically from a combination of ontologies
synonym: "lobuli glandulae thyroideae" RELATED LATIN [Wikipedia:Lobes_of_thyroid_gland]
synonym: "lobus (glandula thyroidea)" EXACT []
synonym: "thyroid gland lobe" EXACT []
synonym: "thyroid lobe" EXACT []
xref: EHDAA2:0002032
xref: EMAPA:18196
xref: EMAPA:18830
xref: FMA:13367
xref: http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9e/Gray1174.png/200px-Gray1174.png
xref: MA:0000131
xref: ncithesaurus:Thyroid_Gland_Lobe
xref: SCTID:245537001
xref: VHOG:0000732
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0001119
name: right lobe of thyroid gland
synonym: "lobus dexter (glandula thyroidea)" EXACT []
synonym: "right thyroid lobe" EXACT []
synonym: "thyroid gland right lobe" EXACT []
xref: EHDAA2:0001759
xref: EMAPA:18198
xref: FMA:13368
xref: MA:0000729
xref: ncithesaurus:Right_Thyroid_Gland_Lobe
xref: SCTID:170482008
xref: VHOG:0000733
is_a: UBERON:0001118 ! lobe of thyroid gland
relationship: in_right_side_of UBERON:0002046
intersection_of: UBERON:0001118 ! lobe of thyroid gland
intersection_of: in_right_side_of UBERON:0002046 ! thyroid gland
relationship: in_right_side_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0001120
name: left lobe of thyroid gland
synonym: "left thyroid lobe" EXACT []
synonym: "lobus sinister (glandula thyroidea)" EXACT []
synonym: "thyroid gland left lobe" EXACT []
xref: EHDAA2:0000965
xref: EMAPA:18197
xref: FMA:13369
xref: MA:0000728
xref: ncithesaurus:Left_Thyroid_Gland_Lobe
xref: SCTID:170784008
xref: VHOG:0000734
is_a: UBERON:0001118 ! lobe of thyroid gland
relationship: in_left_side_of UBERON:0002046
intersection_of: UBERON:0001118 ! lobe of thyroid gland
intersection_of: in_left_side_of UBERON:0002046 ! thyroid gland
relationship: in_left_side_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0001121
name: longus colli muscle
def: "The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebræ and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebræ; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebræ. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebræ, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebræ. [WP,unvetted]." [Wikipedia:Longus_colli_muscle]
subset: organ_slim
subset: uberon_slim
synonym: "longi colli" RELATED [Wikipedia:Longus_colli_muscle]
synonym: "longus colli" EXACT [MA:0002341]
synonym: "longus colli muscle" EXACT [Wikipedia:Longus_colli_muscle]
synonym: "musculus longus colli" RELATED LATIN [Wikipedia:Longus_colli_muscle]
xref: FMA:13370
xref: http://upload.wikimedia.org/wikipedia/commons/a/a6/Longus_colli.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Longus_colli.png/200px-Longus_colli.png
xref: MA:0002341
xref: ncithesaurus:Longus_Colli
xref: SCTID:244836009
is_a: UBERON:0003830 ! thoracic segment muscle
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: has_muscle_insertion UBERON:0003996 {source="dbpedia"} ! arcus anterior
relationship: has_muscle_origin UBERON:0001077 {source="dbpedia", notes="Transverse processes of C-5 to T-3"} ! transverse process of vertebra
relationship: part_of UBERON:0008818 {source="FMA"} ! superior mediastinum
[Term]
id: UBERON:0001122
name: scalenus medius
def: "The Scalenus medius, the largest and longest of the three scalene muscles, arises from the posterior tubercles of the transverse processes of the lower six cervical vertebræ. It descendes along the side of the vertebral column to insert by a broad attachment into the upper surface of the first rib, between the tubercle and the subclavian groove. The brachial plexus and the subclavian artery pass anterior to it. Because it elevates the upper ribs, the middle scalene muscle is also one of the accessory muscles of respiration. [WP,unvetted]." [Wikipedia:Scalenus_medius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "medial scalene muscle" EXACT []
synonym: "middle scalene" EXACT []
synonym: "musculus scalenus medius" EXACT [FMA:13386, FMA:TA]
synonym: "musculus scalenus medius" RELATED LATIN [Wikipedia:Scalenus_medius]
synonym: "scalenus medius muscle" EXACT []
xref: FMA:13386
xref: http://upload.wikimedia.org/wikipedia/commons/f/fa/Scalenus_medius.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Scalenus_medius.png/200px-Scalenus_medius.png
xref: MA:0002370
xref: ncithesaurus:Scalenus_Medius
xref: SCTID:244844009
is_a: UBERON:0002377 ! muscle of neck
is_a: UBERON:0004518 ! muscle of vertebral column
relationship: has_muscle_insertion UBERON:0004601 {source="dbpedia"} ! rib 1
relationship: has_muscle_nerve UBERON:0000962 {notes="Ventral rami of the third to eighth cervical spinal nerves", source="dbpedia"} ! cervical nerve
relationship: has_muscle_origin UBERON:0002413 {source="dbpedia"} ! cervical vertebra
[Term]
id: UBERON:0001123
name: scalenus posterior
def: "The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebræ, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the Serratus anterior. It is occasionally blended with the Scalenus medius. [WP,unvetted]." [Wikipedia:Scalenus_posterior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus scalenus posterior" EXACT [FMA:13387, FMA:TA]
synonym: "musculus scalenus posterior" RELATED LATIN [Wikipedia:Scalenus_posterior]
synonym: "posterior scalene" EXACT []
synonym: "posterior scalene muscle" EXACT []
synonym: "scalenus dorsalis" EXACT []
synonym: "scalenus dorsalis muscle" EXACT []
xref: FMA:13387
xref: http://upload.wikimedia.org/wikipedia/commons/f/f3/Scalenus_posterior.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f3/Scalenus_posterior.png/200px-Scalenus_posterior.png
xref: MA:0002369
xref: ncithesaurus:Scalenus_Dorsalis
is_a: UBERON:0002377 ! muscle of neck
relationship: has_muscle_origin UBERON:0001077 {source="dbpedia", notes="transverse processes of C4 - C6"} ! transverse process of vertebra
[Term]
id: UBERON:0001124
name: pectoral limb scapula
def: "In human anatomy, the scapula, omo (Medical Latin), or shoulder blade, is the bone that connects the humerus (arm bone) with the clavicle (collar bone). The scapula forms the posterior (back) located part of the shoulder girdle. In humans, it is a flat bone, roughly triangular in shape, placed on a posterolateral aspect of the thoracic cage. [WP,unvetted]." [Wikipedia:Scapula]
comment: Alternate definition: A scapula that is connected to a pectoral limb. Taxon notes: present in all tetrapods with even vestiges of anterior limbs, e.g., turtles & birds & mammals. Development notes: chick scapula is of dual origin and segmentally organized[ISBN:978-0-12-319060-4]
subset: uberon_slim
synonym: "shoulder blade" EXACT []
synonym: "tetrapod scapula" RELATED []
xref: AAO:0000751
xref: BTO:0001218
xref: EFO:0001400
xref: EMAPA:18722
xref: FMA:13394
xref: GAID:186
xref: galen:Scapula
xref: http://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Pectoral_girdles-en.svg/200px-Pectoral_girdles-en.svg.png
xref: MA:0001330
xref: ncithesaurus:Scapula
xref: OpenCyc:Mx4rvVji0JwpEbGdrcN5Y29ycA
xref: SCTID:302517007
xref: VHOG:0001398
property_value: UBPROP:0000001 "Paired bony elements of endochondral origin. They are situated at the level of the jaw articulation, in a vertical position, with the suprascapular margin being dorsal and the glenoid end being ventral.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: has pars glenoidalis of scapula (AAO:0000753)[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of scapular area (AAO:0000935)[AAO]" xsd:string
is_a: UBERON:0003461 ! shoulder bone
is_a: UBERON:0006849 ! scapula
relationship: develops_from UBERON:0006290 {evidence="definitional"} ! scapula cartilage condensation
relationship: distally_connected_to UBERON:0000976 ! humerus
relationship: part_of UBERON:0001467 {source="FMA"} ! shoulder
[Term]
id: UBERON:0001125
name: serratus anterior
def: "The serratus anterior is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]." [Wikipedia:Serratus_anterior_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Boxer's muscle" EXACT []
synonym: "musculus serratus anterior, serratus lateralis" RELATED LATIN [Wikipedia:Serratus_anterior_muscle]
synonym: "serratus anterior muscle" EXACT []
synonym: "serratus ventralis" EXACT []
xref: EHDAA2:0001832
xref: EHDAA:9463
xref: EMAPA:18525
xref: FMA:13397
xref: http://upload.wikimedia.org/wikipedia/commons/c/c6/Serratus_anterior.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Serratus_anterior.png/200px-Serratus_anterior.png
xref: MA:0002378
xref: ncithesaurus:Serratus_Ventralis
xref: OpenCyc:Mx4rvWn_D5wpEbGdrcN5Y29ycA
xref: SCTID:181748003
xref: VHOG:0000679
is_a: UBERON:0001482 ! muscle of shoulder
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010986 {source="EHDAA2"} ! serratus anterior pre-muscle mass
relationship: has_muscle_antagonist UBERON:0002380 {source="dbpedia"} ! trapezius
relationship: has_muscle_insertion UBERON:0006849 {notes="costal aspect of medial margin of the scapula", source="dbpedia"} ! scapula
relationship: has_muscle_nerve UBERON:0003726 {source="dbpedia", notes="long thoracic nerve"} ! thoracic nerve
relationship: has_muscle_origin UBERON:0002228 {notes="fleshy slips from the outer surface of upper 8 or 9 ribs", source="dbpedia"} ! rib
[Term]
id: UBERON:0001126
name: serratus posterior superior muscle
def: "The Serratus posterior superior is a thin, quadrilateral muscle, situated at the upper and back part of the thorax. It arises by a thin and broad aponeurosis from the lower part of the ligamentum nuchae, from the spinous processes of the seventh cervical and upper two or three thoracic vertebræ and from the supraspinal ligament. Inclining downward and lateralward it becomes muscular, and is inserted, by four fleshy digitations, into the upper borders of the second, third, fourth, and fifth ribs, a little beyond their angles. [WP,unvetted]." [Wikipedia:Serratus_posterior_superior_muscle]
subset: uberon_slim
synonym: "serratus dorsalis cranialis" EXACT [MA:0002377]
synonym: "serratus dorsalis cranialis muscle" EXACT []
synonym: "serratus posterior superior" EXACT [FMA:13401]
synonym: "superior serratus posterior" EXACT []
xref: FMA:13401
xref: MA:0002377
xref: ncithesaurus:Serratus_Dorsalis_Cranialis
xref: SCTID:244935007
is_a: UBERON:0003830 ! thoracic segment muscle
is_a: UBERON:0011217 {source="FMA"} ! serratus posterior
relationship: has_muscle_insertion UBERON:0002228 {notes="rib 2 thru 5 in human", source="dbpedia"} ! rib
relationship: has_muscle_nerve UBERON:0003727 {source="dbpedia", notes="2 thru 5 in human"} ! intercostal nerve
relationship: has_muscle_origin UBERON:0000351 ! nuchal ligament
relationship: has_muscle_origin UBERON:0001076 {source="dbpedia", notes="C7 thru T3 in human"} ! spinous process of vertebra
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0001127
name: serratus posterior inferior muscle
def: "The Serratus posterior inferior muscle (or posterior serratus) is a muscle of the human body. [WP,unvetted]." [Wikipedia:Serratus_posterior_inferior_muscle]
subset: uberon_slim
synonym: "inferior serratus posterior" EXACT []
synonym: "serratus dorsalis caudalis" EXACT []
xref: FMA:13402
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Serratus_posterior.PNG/200px-Serratus_posterior.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Serratus_posterior.PNG/250px-Serratus_posterior.PNG
xref: MA:0002376
xref: ncithesaurus:Serratus_Dorsalis_Caudalis
xref: SCTID:244936008
is_a: UBERON:0011217 {source="FMA"} ! serratus posterior
relationship: has_muscle_insertion UBERON:0002228 {notes="inferior border of 9th thru 12th in humans", source="dbpedia"} ! rib
relationship: has_muscle_nerve UBERON:0003727 {source="dbpedia", notes="T9 through T12 in human"} ! intercostal nerve
relationship: has_muscle_origin UBERON:0002412 {notes="T11 through L2 in human", source="dbpedia"} ! vertebra
[Term]
id: UBERON:0001128
name: sternocleidomastoid
def: "In human anatomy, the sternocleidomastoid muscle, also known as sternomastoid and commonly abbreviated as SCM, is a paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]." [Wikipedia:Sternocleidomastoid_muscle]
comment: Editor notes: TODO: sternocleidomastoid = sternomastoid + Cleidomastoideus. Origin: from manubrium sterni (sterno) and clavicle (cleido) and it's insertion at the mastoid process of the temporal bone.
subset: uberon_slim
synonym: "musculus sternocleidomastoideus" RELATED LATIN [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sterno-cleido-mastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sterno-mastoid" EXACT []
synonym: "sterno-mastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternocleidomastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternocleidomastoid muscle" EXACT [BTO:0005125]
synonym: "sternocleidomastoid muscles" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternocleidomastoidei" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternocleidomastoideus" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternocleidomastoideus muscle" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternocleidomastoids" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternomastoid" EXACT []
synonym: "sternomastoid" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "sternomastoid muscle" EXACT []
synonym: "sternomastoid muscle" RELATED [Wikipedia:Sternocleidomastoid_muscle]
synonym: "supraclavicularis muscle" RELATED [Wikipedia:Sternocleidomastoid_muscle]
xref: BTO:0005125
xref: EMAPA:25137
xref: FMA:13407
xref: http://upload.wikimedia.org/wikipedia/commons/f/f9/Gray512.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray512.png/200px-Gray512.png
xref: MA:0002384
xref: ncithesaurus:Sternocleidomastoid_Muscle
xref: OpenCyc:Mx4rv2bMg5wpEbGdrcN5Y29ycA
xref: SCTID:181741009
xref: VHOG:0000853
is_a: UBERON:0002377 ! muscle of neck
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011364 ! cleidocephalicus muscle
relationship: develops_from UBERON:0010987 ! sterno-mastoid pre-muscle mass
relationship: has_muscle_insertion UBERON:0011220 {source="Wikipedia:Mastoid_process"} ! mastoid process of temporal bone
relationship: has_muscle_nerve UBERON:0003725 {source="dbpedia", notes="sensory: cervical plexus"} ! cervical plexus
relationship: has_muscle_origin UBERON:0001105 {source="dbpedia", notes="manubrium sterni medial portion of the clavicle"} ! clavicle
relationship: has_muscle_origin UBERON:0002205 {source="dbpedia", notes="manubrium sterni medial portion of the clavicle"} ! manubrium of sternum
[Term]
id: UBERON:0001129
name: subscapularis muscle
def: "The subscapularis is a large triangular muscle which fills the subscapular fossa and inserts into the lesser tubercle of the humerus and the front of the capsule of the shoulder-joint. [WP,unvetted]." [Wikipedia:Subscapularis_muscle]
subset: uberon_slim
synonym: "musculus subscapularis" RELATED LATIN [Wikipedia:Subscapularis_muscle]
synonym: "subcoracoscapularis" RELATED SENSU [ISBN10:0073040584]
synonym: "subscapularis" EXACT [MA:0002388]
xref: EHDAA2:0001943
xref: EHDAA:8317
xref: EMAPA:18181
xref: FMA:13413
xref: http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png
xref: MA:0002388
xref: ncithesaurus:Subscapularis
xref: OpenCyc:Mx4rviCRIJwpEbGdrcN5Y29ycA
xref: SCTID:277446000
xref: VHOG:0000850
is_a: UBERON:0001482 ! muscle of shoulder
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010993 ! subscapularis pre-muscle mass
relationship: has_muscle_insertion UBERON:0000976 {notes="lesser tubercle of humerus", source="dbpedia"} ! humerus
relationship: part_of UBERON:0003683 {source="Wikipedia"} ! rotator cuff
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle
[Term]
id: UBERON:0001130
name: vertebral column
def: "Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body." [https://sourceforge.net/tracker/?func=detail&aid=3530322&group_id=76834&atid=2257941, UBERON:cjm, Wikipedia:Vertebral_column]
comment: Editor notes: Note that in contrast to VSAO, this is a subset of the skeletal system, and thus includes intervertebral joints, cartilage and ligaments etc. Some ontologies such as AAO seem to purely refer to the skeleton
subset: uberon_slim
subset: vertebrate_core
synonym: "backbone" NARROW [FMA:13478]
synonym: "columna vertebralis" RELATED [BTO:0000818]
synonym: "spinal column" RELATED [MESH:A.02.835.232.834]
synonym: "spine" BROAD [FMA:13478]
synonym: "vertebral column skeleton" NARROW [AAO:0000699]
xref: AAO:0000699
xref: AAO:0000734
xref: BTO:0000818
xref: EFO:0001369
xref: EHDA:10119
xref: EMAPA:16666
xref: FMA:13478
xref: GAID:106
xref: galen:SpinalColumn
xref: MA:0002416
xref: MESH:A.02.835.232.834
xref: ncithesaurus:Spinal_Cord_Column
xref: ncithesaurus:Vertebral_Column
xref: NIF_Subcellular:sao1145756102
xref: OpenCyc:Mx4rv2j-CpwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA
xref: SCTID:44300000
xref: TAO:0001559
xref: VHOG:0001142
xref: VSAO:0000185
xref: XAO:0003074
xref: ZFA:0001559
property_value: UBPROP:0000001 "Anatomical cluster that consists of all the vertebra in the body.[VSAO]" xsd:string
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
relationship: part_of UBERON:0011138 {source="cjm"} ! post-cranial axial skeletal system
[Term]
id: UBERON:0001131
name: vertebral foramen
def: "In a typical vertebra, the vertebral foramen is the foramen formed by the anterior segment, and the posterior part, the vertebral arch. The vertebral foramen begins at cervical vertebrae #1 and continues inferior to lumbar vertebrae #5. Within this foramen the spinal cord and associated meninges are housed. [WP,unvetted]." [Wikipedia:Vertebral_foramen]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "foramen vertebrale" RELATED LATIN [Wikipedia:Vertebral_foramen]
synonym: "vertebra neural canal" EXACT []
xref: AAO:0000729
xref: FMA:13479
xref: http://upload.wikimedia.org/wikipedia/commons/1/10/Foramenvertebrale.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/10/Foramenvertebrale.png/200px-Foramenvertebrale.png
xref: MA:0001454
xref: OpenCyc:Mx4rv_EvQZwpEbGdrcN5Y29ycA
xref: SCTID:280734009
property_value: UBPROP:0000001 "Opening on the vertebra for a spinal nerve as it emerges from the spinal canal.[AAO]" xsd:string
is_a: UBERON:0010276 ! vertebral column opening
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001132
name: parathyroid gland
def: "The parathyroid gland is an organ specialised for secretion of parathyroid hormone[GO]. Parathyroid glands control the amount of calcium in the blood and within the bones[WP]." [Wikipedia:Parathyroid_gland]
comment: Development notes: table 13.1 of Kardong is used to create the taxon-specific developmental relationships here, although some omissions are made for simplicity. Additional notes: Parathyroid glands are found in all adult tetrapods, although they vary in their number, and in their exact position. Mammals typically have four parathyroids, while other groups typically have six. Fish do not possess parathyroid glands, although the ultimobranchial glands, which are found close to the oesophagus, may have a similar function and could even be homologous with the tetrapod parathyroids. Even these glands are absent in the most primitive vertebrates, the jawless fish, but as these species have no bone in their skeletons, only cartilage, it may be that they have less need to regulate calcium metabolism. The conserved homology of genes and calcium-sensing receptors in fish gills with those in the parathryroid glands of birds and mammals is recognized by evolutionary developmental biology as evolution-using genes and gene networks in novel ways to generate new structures with some similar functions and novel functions[WP]. The parathryoid gland is not formed in fish, but is only found in tetrapods. In humans and chick it emerges from pouches 3 and 4, but in mice it is exclusively generated by the third pouch[PMID:16313389]
subset: organ_slim
subset: uberon_slim
synonym: "parathyroid" EXACT []
synonym: "parathyroid secreting cell" RELATED []
xref: AAO:0010545
xref: BTO:0000997
xref: EFO:0000862
xref: EV:0100134
xref: FMA:13890
xref: GAID:452
xref: MA:0000128
xref: MAT:0000082
xref: MESH:A.06.407.560
xref: MIAA:0000082
xref: ncithesaurus:Parathyroid_Gland
xref: SCTID:181121007
xref: VHOG:0001188
xref: XAO:0000167
property_value: UBPROP:0000001 "Either of the two pairs of small, spherical, encapsulated glands which develop from ventral growths of the third and fourth pharyngeal pouches and are closely associated with the external jugular veins. Calcitonin and parathyroid hormone are secreted by these glands.[AAO]" xsd:string
is_a: UBERON:0002368 ! endocrine gland
relationship: develops_from UBERON:0007124 {gci_relation="part_of", gci_filler="NCBITaxon:10090", source="PMID:16313389"} ! pharyngeal pouch 3
relationship: develops_from UBERON:0007125 {gci_filler="NCBITaxon:9030", gci_relation="part_of", source="PMID:16313389", notes="pouches 3 and 4 in chick"} ! pharyngeal pouch 4
relationship: develops_from UBERON:0007125 {gci_filler="NCBITaxon:9606", gci_relation="part_of", notes="pouches 3 and 4 in human", source="PMID:16313389"} ! pharyngeal pouch 4
relationship: has_developmental_contribution_from UBERON:0010025 {source="ISBN10:0073040584-table13.1", gci_relation="part_of", gci_filler="NCBITaxon:40674", notes="Mammals"} ! dorsal part of pharyngeal pouch 3
relationship: has_developmental_contribution_from UBERON:0010026 {source="ISBN10:0073040584-table13.1", gci_relation="part_of", notes="Urodele", gci_filler="NCBITaxon:8293"} ! ventral part of pharyngeal pouch 3
relationship: has_developmental_contribution_from UBERON:0010026 {source="ISBN10:0073040584-table13.1", gci_filler="NCBITaxon:8342", gci_relation="part_of", notes="Anurans", source="XAO"} ! ventral part of pharyngeal pouch 3
relationship: has_developmental_contribution_from UBERON:0010026 {source="ISBN10:0073040584-table13.1", gci_relation="part_of", gci_filler="NCBITaxon:8782", notes="Aves"} ! ventral part of pharyngeal pouch 3
relationship: has_developmental_contribution_from UBERON:0010027 {source="ISBN10:0073040584-table13.1", gci_relation="part_of", gci_filler="NCBITaxon:40674", notes="Mammals"} ! dorsal part of pharyngeal pouch 4
relationship: has_developmental_contribution_from UBERON:0010028 {source="ISBN10:0073040584-table13.1", gci_filler="NCBITaxon:8342", gci_relation="part_of", notes="Anurans"} ! ventral part of pharyngeal pouch 4
relationship: has_developmental_contribution_from UBERON:0010028 {source="ISBN10:0073040584-table13.1", gci_relation="part_of", notes="Urodele", gci_filler="NCBITaxon:8293"} ! ventral part of pharyngeal pouch 4
relationship: has_developmental_contribution_from UBERON:0010028 {source="ISBN10:0073040584-table13.1", gci_relation="part_of", gci_filler="NCBITaxon:8782", notes="Aves"} ! ventral part of pharyngeal pouch 4
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001133
name: cardiac muscle tissue
alt_id: UBERON:0007096
def: "Muscle composed of cardiac muscle cells that is part of the heart[ZFA]. involuntary striated muscle found in the walls of the heart, specifically the myocardium[Wikipedia]. Tissue which consists of cardiac myocytes surrounded by cardiac endomysium. Examples: Cardiac muscle tissue proper, conducting tissue of heart[FMA]." [FMA:14068]
comment: check relationship with myocardium. part_of in MA - but we also have a more specific class 'cardiac muscle tissue of myocardium'. Check ncit
subset: uberon_slim
subset: vertebrate_core
synonym: "cardiac muscle" EXACT []
synonym: "cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac musculature" RELATED [BILA:0000134]
synonym: "heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium" EXACT [OBOL:automatic]
xref: AAO:0010245
xref: AEO:0000142
xref: BILA:0000134
xref: BTO:0000199
xref: EHDAA2:0003142
xref: FMA:14068
xref: galen:CardiacMuscle
xref: galen:CardiacMuscleTissue
xref: ncithesaurus:Heart_Muscle
xref: TAO:0005280
xref: ZFA:0005280
is_a: UBERON:0002036 ! striated muscle tissue
disjoint_from: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0000948 {source="ZFA"} ! heart
[Term]
id: UBERON:0001134
name: skeletal muscle tissue
def: "Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm[FMA]. Striated muscle tissue under control of the somatic nervous system. It is one of three major muscle types, the others being cardiac and smooth muscle. As its name suggests, most skeletal muscle is attached to bones by bundles of collagen fibers known as tendons. Skeletal muscle is made up of individual components known as muscle fibers. These fibers are formed from the fusion of developmental myoblasts. The myofibers are long, cylindrical, multinucleated cells composed of actin and myosin myofibrils repeated as a sarcomere, the basic functional unit of the cell and responsible for skeletal muscle's striated appearance and forming the basic machinery necessary for muscle contraction. The term muscle refers to multiple bundles of muscle fibers held together by connective tissue[WP]." [Wikipedia:Skeletal_striated_muscle]
comment: TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Todo - group FBbt:00005073 - somatic muscle.
subset: uberon_slim
subset: vertebrate_core
synonym: "skeletal muscle" EXACT []
synonym: "skeletal muscle organ" RELATED []
synonym: "skeletal muscle system" RELATED [BTO:0001103]
synonym: "somatic muscle" RELATED [BTO:0001103]
xref: AAO:0011099
xref: BTO:0001103
xref: EFO:0000888
xref: EHDAA2:0001842
xref: EHDAA:2923
xref: EHDAA:5035
xref: EHDAA:5043
xref: EHDAA:5978
xref: EHDAA:5984
xref: EHDAA:8277
xref: EHDAA:8291
xref: EHDAA:8326
xref: EHDAA:9146
xref: EV:0100377
xref: FMA:14069
xref: GAID:141
xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Skeletal_muscle.jpg
xref: MA:0002439
xref: MAT:0000302
xref: MESH:A.02.633.567
xref: MIAA:0000302
xref: ncithesaurus:Skeletal_Muscle_Tissue
xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA
xref: SCTID:426215008
xref: TAO:0005277
xref: VHOG:0000319
xref: XAO:0000174
xref: ZFA:0005277
property_value: UBPROP:0000001 "Muscle, composed of long cylindrical, multinucleated cells that attaches to the skeleton via tendons.[TAO]" xsd:string
is_a: UBERON:0002036 ! striated muscle tissue
relationship: develops_from UBERON:0003082 ! myotome
[Term]
id: UBERON:0001135
name: smooth muscle tissue
def: "Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length[GO]. Tissue which consists of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Examples: Arrector muscle of hair, Muscularis mucosae." [Wikipedia:Smooth_muscle_tissue]
comment: terminological note: GO uses visceral and smooth interchangeably. However visceral can also be used in the sense of the viscera. Many fly annotations to smooth muscle terms. If we want to be inclusive of insects have to have a general definition of tissue that includes cells.
subset: uberon_slim
subset: vertebrate_core
synonym: "involuntary muscle" EXACT []
synonym: "non-striated muscle" EXACT []
synonym: "smooth muscle" EXACT []
synonym: "textus muscularis levis; textus muscularis nonstriatus" RELATED LATIN [Wikipedia:Smooth_muscle_tissue]
synonym: "textus muscularis nonstriatus" EXACT [FMA:14070, FMA:TA]
synonym: "visceral muscle" NARROW SENSU []
synonym: "visceral muscle tissue" NARROW SENSU []
xref: AAO:0010244
xref: AEO:0000141
xref: BTO:0001260
xref: EFO:0000889
xref: EHDAA2:0003141
xref: EMAPA:18923
xref: EV:0100378
xref: FBbt:00003525
xref: FMA:14070
xref: GAID:167
xref: galen:SmoothMuscle
xref: galen:SmoothMuscleTissue
xref: http://upload.wikimedia.org/wikipedia/commons/3/3b/Glatte_Muskelzellen.jpg
xref: MA:0000166
xref: MAT:0000303
xref: MESH:A.02.633.570
xref: MIAA:0000303
xref: ncithesaurus:Smooth_Muscle_Tissue
xref: OpenCyc:Mx4rvvSS3pwpEbGdrcN5Y29ycA
xref: TAO:0005274
xref: VHOG:0001246
xref: WBbt:0005781
xref: XAO:0000175
xref: ZFA:0005274
property_value: UBPROP:0000001 "A non-striated muscle that is composed of spindle-shaped cells. Smooth muscle usually is organized into sheets that line cavitated organs.[TAO]" xsd:string
property_value: UBPROP:0000001 "Involuntary muscle tissue consisting of uninucleate spindle-shaped fibers.[AAO]" xsd:string
is_a: UBERON:0002385 ! muscle tissue
disjoint_from: UBERON:0002036 ! striated muscle tissue
[Term]
id: UBERON:0001136
name: mesothelium
def: "Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri)." [Wikipedia:Mesothelium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "meso-epithelium" EXACT []
xref: AEO:0000111
xref: BTO:0002422
xref: EHDAA2:0003111
xref: EHDAA:2331
xref: EHDAA:2339
xref: EHDAA:2349
xref: EHDAA:295
xref: EHDAA:6073
xref: EHDAA:640
xref: EHDAA:646
xref: FMA:14074
xref: http://upload.wikimedia.org/wikipedia/commons/2/25/Mesothelium_peritoneal_wash_high_mag.jpg
xref: MA:0000565
xref: ncithesaurus:Mesothelium
xref: SCTID:361918002
is_a: UBERON:0000487 ! simple squamous epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: adjacent_to UBERON:0000042
relationship: develops_from UBERON:0000926
intersection_of: UBERON:0000487 ! simple squamous epithelium
intersection_of: adjacent_to UBERON:0000042 ! serous membrane
intersection_of: develops_from UBERON:0000926 ! mesoderm
relationship: adjacent_to UBERON:0000042 ! serous membrane
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0001137
name: dorsum
def: "The dorsal part of an animal, which in vertebrares includes the vertebral column. [cjm]." [Dorsum_(anatomy), UBERONREF:0000006]
comment: Taxon notes: In humans, called the back, a large posterior area of the human body, rising from the top of the buttocks to the back of the neck and the shoulders. It is the surface opposite to the chest, its height being defined by the vertebral column (commonly referred to as the spine or backbone) and its breadth being supported by the ribcage and shoulders. The spinal canal runs through the spine and provides nerves to the rest of the body
subset: uberon_slim
synonym: "back" EXACT [FMA:14181]
synonym: "back of body proper" EXACT [FMA:14181]
xref: BTO:0001713
xref: EFO:0001405
xref: FMA:14181
xref: GAID:30
xref: galen:Back
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/432px-Gray-back.PNG/200px-432px-Gray-back.PNG
xref: MESH:A.01.176
xref: ncithesaurus:Back
xref: OpenCyc:Mx4rvVkEU5wpEbGdrcN5Y29ycA
xref: SCTID:123961009
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001138
name: superior mesenteric vein
def: "In anatomy, the superior mesenteric vein (SMV) is a blood vessel that drains blood from the small intestine. At its termination behind the neck of the pancreas, the SMV combines with the splenic vein to form the hepatic portal vein. The SMV lies to the right of the similarly named artery, the superior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [Wikipedia:Superior_mesenteric_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "upper mesenteric vein" RELATED [BTO:0002783]
synonym: "vena mesenterica superior" RELATED LATIN [Wikipedia:Superior_mesenteric_vein]
xref: BTO:0002783
xref: EHDAA2:0001951
xref: EHDAA:5414
xref: EMAPA:18643
xref: FMA:14332
xref: http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png
xref: MA:0002179
xref: ncithesaurus:Superior_Mesenteric_Vein
xref: OpenCyc:Mx4rwFjmM5wpEbGdrcN5Y29ycA
xref: SCTID:278031001
xref: VHOG:0000552
is_a: UBERON:0005617 ! mesenteric vein
relationship: develops_from UBERON:0005487 {source="Wikipedia:Vitelline_vein"} ! vitelline vein
[Term]
id: UBERON:0001139
name: common iliac vein
def: "In human anatomy, the common iliac veins are formed by the external iliac veins and internal iliac veins and together, in the abdomen at the level of the fifth lumbar vertebrae, form the inferior vena cava. They drain blood from the pelvis and lower limbs. Both common iliac veins are accompanied along their course by common iliac arteries. [WP,unvetted]." [Wikipedia:Common_iliac_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "common iliac venous tree" EXACT []
synonym: "vena iliaca communis" RELATED LATIN [Wikipedia:Common_iliac_vein]
xref: EMAPA:17874
xref: FMA:14333
xref: galen:CommonIliacVein
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Iliac_veins.gif/200px-Iliac_veins.gif
xref: MA:0002143
xref: ncithesaurus:Common_Iliac_Vein
xref: OpenCyc:Mx4rv92CGZwpEbGdrcN5Y29ycA
xref: SCTID:181398004
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001140
name: renal vein
def: "The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted]." [Wikipedia:Renal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "kidney vein" EXACT [OBOL:automatic]
synonym: "kidney venous blood vessel" EXACT [MA:0002591]
synonym: "renal venous tree" EXACT []
synonym: "vein of kidney" EXACT [OBOL:automatic]
synonym: "venae renales" RELATED LATIN [Wikipedia:Renal_vein]
xref: BTO:0002681
xref: EHDAA2:0001602
xref: EHDAA:8722
xref: EMAPA:19223
xref: EMAPA:28376
xref: FMA:14334
xref: GAID:544
xref: galen:RenalVein
xref: http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png
xref: MA:0002210
xref: MA:0002591
xref: MESH:A.07.231.908.752
xref: ncithesaurus:Renal_Vein
xref: OpenCyc:Mx4rvdUXKJwpEbGdrcN5Y29ycA
xref: SCTID:116358006
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003517 ! kidney blood vessel
relationship: part_of UBERON:0002113
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001141
name: right renal vein
comment: This class was created automatically from a combination of ontologies
xref: FMA:14335
xref: MA:0002212
xref: ncithesaurus:Right_Renal_Vein
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA
xref: SCTID:116357001
is_a: UBERON:0001140 ! renal vein
[Term]
id: UBERON:0001142
name: left renal vein
def: "The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted]." [Wikipedia:Left_renal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:14336
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png
xref: MA:0002211
xref: ncithesaurus:Left_Renal_Vein
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA
xref: SCTID:116356005
is_a: UBERON:0001140 ! renal vein
[Term]
id: UBERON:0001143
name: hepatic vein
def: "In human anatomy, the hepatic veins are the blood vessels that drain de-oxygenated blood from the liver and blood cleaned by the liver into the inferior vena cava. They arise from the substance of the liver, more specifically the central vein of the liver lobule. None of the hepatic veins have valves. [WP,unvetted]." [Wikipedia:Hepatic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "hepatic veins" RELATED []
synonym: "liver vein" EXACT [OBOL:automatic]
synonym: "vein of liver" EXACT [OBOL:automatic]
synonym: "vena hepatica" EXACT []
synonym: "venae hepaticae" RELATED LATIN [Wikipedia:Hepatic_vein]
xref: AAO:0010216
xref: EMAPA:19221
xref: FMA:14337
xref: GAID:534
xref: galen:HepaticVein
xref: http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png
xref: MESH:A.07.231.908.380
xref: ncithesaurus:Hepatic_Vein
xref: OpenCyc:Mx4rv5GivJwpEbGdrcN5Y29ycA
xref: SCTID:278191001
xref: TAO:0000670
xref: XAO:0000387
xref: ZFA:0000670
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003497 ! abdomen blood vessel
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0002107
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002107 ! liver
relationship: develops_from UBERON:0005487 {source="Wikipedia:Vitelline_vein"} ! vitelline vein
relationship: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0006877 ! vasculature of liver
[Term]
id: UBERON:0001144
name: testicular vein
def: "The testicular vein (or spermatic vein), the male gonadal vein, carries deoxygenated blood from its corresponding testis to the inferior vena cava or one of its tributaries. It is the male equivalent of the ovarian vein, and is the venous counterpart of the testicular artery. It is a paired vein, with one supplying each testis: the right testicular vein generally joins the inferior vena cava; the left testicular vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. The veins emerge from the back of the testis, and receive tributaries from the epididymis; they unite and form a convoluted plexus, called the pampiniform plexus, which constitutes the greater mass of the spermatic cord; the vessels composing this plexus are very numerous, and ascend along the cord, in front of the ductus deferens. Below the subcutaneous inguinal ring, they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins, which ascend on the Psoas major, behind the peritoneum, lying one on either side of the internal spermatic artery. These unite to form a single vein, which opens, on the right side, into the inferior vena cava (at an acute angle), on the left side into the left renal vein (at a right angle). The spermatic veins are provided with valves. The left spermatic vein passes behind the iliac colon and is thus exposed to pressure from the contents of that part of the bowel. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&aid=3220553&group_id=76834&atid=1205376, Wikipedia:Testicular_vein]
comment: Comment: todo - check testicular vs spermatic vein (MA:0002218)
subset: uberon_slim
synonym: "male gonadal vein" EXACT [Wikipedia:Testicular_vein]
synonym: "spermatic vein" EXACT [Wikipedia:Testicular_vein]
synonym: "testicle vein" EXACT [OBOL:automatic]
synonym: "testicular venous tree" EXACT [Wikipedia:Testicular_vein]
synonym: "vein of testicle" EXACT [OBOL:automatic]
synonym: "vena tesicularis" RELATED [BTO:0002678]
synonym: "vena testicularis dextra," RELATED LATIN [Wikipedia:Testicular_vein]
synonym: "vena testicularis sinistra," RELATED LATIN [Wikipedia:Testicular_vein]
synonym: "venae spermaticae" RELATED LATIN [Wikipedia:Testicular_vein]
xref: BTO:0002678
xref: EMAPA:18647
xref: FMA:14344
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/Gray590.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Gray590.png/200px-Gray590.png
xref: MA:0002218
xref: MA:0002234
xref: ncithesaurus:Spermatic_Vein
xref: OpenCyc:Mx4rv1WIHpwpEbGdrcN5Y29ycA
xref: SCTID:264496006
is_a: UBERON:0003848 ! gonadal vein
relationship: attaches_to UBERON:0000473
intersection_of: UBERON:0001638 ! vein
intersection_of: attaches_to UBERON:0000473 ! testis
relationship: attaches_to UBERON:0000473 ! testis
[Term]
id: UBERON:0001145
name: ovarian vein
def: "The ovarian vein, the female gonadal vein, carries deoxygenated blood from its corresponding ovary to inferior vena cava or one of its tributaries. It is the female equivalent of the testicular vein, and is the venous counterpart of the ovarian artery. It can be found in the suspensory ligament of the ovary. It a paired vein, with one supplying each ovary. The right ovarian vein travels through the suspensatory ligament of the ovary and generally joins the inferior vena cava. The left ovarian vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. [WP,unvetted]." [Wikipedia:Ovarian_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "female reproductive system gonad vein" EXACT [OBOL:automatic]
synonym: "female reproductive system gonada vein" EXACT [OBOL:automatic]
synonym: "gonad of female reproductive system vein" EXACT [OBOL:automatic]
synonym: "gonada of female reproductive system vein" EXACT [OBOL:automatic]
synonym: "ovary vein" EXACT [OBOL:automatic]
synonym: "vein of female reproductive system gonad" EXACT [OBOL:automatic]
synonym: "vein of female reproductive system gonada" EXACT [OBOL:automatic]
synonym: "vein of gonad of female reproductive system" EXACT [OBOL:automatic]
synonym: "vein of gonada of female reproductive system" EXACT [OBOL:automatic]
synonym: "vein of ovary" EXACT [OBOL:automatic]
synonym: "vena ovarica sinistra, vena ovarica dextra" RELATED LATIN [Wikipedia:Ovarian_vein]
xref: EMAPA:18644
xref: FMA:14346
xref: http://upload.wikimedia.org/wikipedia/commons/c/cf/Ovarschaf.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Ovarschaf.jpg/200px-Ovarschaf.jpg
xref: MA:0002186
xref: ncithesaurus:Ovarian_Vein
xref: OpenCyc:Mx4rvrST5ZwpEbGdrcN5Y29ycA
xref: SCTID:278193003
is_a: UBERON:0001638 ! vein
is_a: UBERON:0004911 ! epithelium of female gonad
relationship: part_of UBERON:0000992
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000992 ! female gonad
relationship: part_of UBERON:0000992 ! female gonad
[Term]
id: UBERON:0001146
name: suprarenal vein
def: "The Suprarenal veins are two in number: the right ends in the inferior vena cava. the left ends in the left renal or left inferior phrenic vein. They receive blood from the adrenal glands and will sometimes form anastomoses with the inferior phrenic veins. [WP,unvetted]." [Wikipedia:Suprarenal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0001966
xref: EHDAA:8731
xref: FMA:14348
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png
xref: MA:0002229
xref: ncithesaurus:Suprarenal_Vein
xref: SCTID:278194009
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001147
name: trunk of peripheral nerve
comment: This class was created automatically from a combination of ontologies
synonym: "peripheral nerve trunk" EXACT []
synonym: "peripheral neural trunk" EXACT []
xref: EMAPA:16986
xref: FMA:14383
xref: MA:0000229
is_a: UBERON:0002464 ! nerve trunk
[Term]
id: UBERON:0001148
name: median nerve
def: "The median nerve is a nerve in humans and other animals. It is in the upper limb. It is one of the five main nerves originating from the brachial plexus. The median nerve is formed from parts of the medial and lateral cords of the brachial plexus, and continues down the arm to enter the forearm with the brachial artery. It originates from the brachial plexus with roots from C5, C6, C7, C8 & T1. The median nerve is the only nerve that passes through the carpal tunnel, where it may be compressed to cause carpal tunnel syndrome. [WP,unvetted]." [Wikipedia:Median_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nervus medianus" RELATED LATIN [Wikipedia:Median_nerve]
xref: EHDAA2:0001086
xref: EHDAA:5648
xref: EMAPA:17277
xref: FMA:14385
xref: GAID:843
xref: http://upload.wikimedia.org/wikipedia/commons/a/a7/Nerves_of_the_left_upper_extremity.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Nerves_of_the_left_upper_extremity.gif/200px-Nerves_of_the_left_upper_extremity.gif
xref: MA:0001168
xref: MESH:A.08.800.800.720.050.500
xref: ncithesaurus:Median_Nerve
xref: OpenCyc:Mx4rwF4HF5wpEbGdrcN5Y29ycA
xref: SCTID:181010001
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003433 ! arm nerve
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001814 ! brachial nerve plexus
[Term]
id: UBERON:0001149
name: bare area of liver
comment: This class was created automatically from a combination of ontologies
synonym: "area nuda (hepar)" EXACT []
synonym: "area nuda hepatis" EXACT []
synonym: "liver bare area" EXACT []
xref: EMAPA:17945
xref: EMAPA:18308
xref: EMAPA:18312
xref: FMA:14480
xref: MA:0000359
xref: SCTID:279965008
is_a: UBERON:0000466 ! immaterial anatomical entity
relationship: part_of UBERON:0001114 ! right lobe of liver
[Term]
id: UBERON:0001150
name: body of pancreas
def: "The body of the pancreas is a subsection of the pancreas organ in the human body. It is somewhat prismatic in shape, and has three surfaces: anterior, posterior, and inferior. It is at the same level as the transpyloric plane. [WP,unvetted]." [Wikipedia:Body_of_pancreas]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "corpus pancreatis" RELATED LATIN [Wikipedia:Body_of_pancreas]
synonym: "pancreas body" EXACT []
synonym: "pancreas corpus" RELATED []
synonym: "pancreatic body" EXACT []
xref: EHDAA2:0001368
xref: EHDAA:9178
xref: EMAPA:17504
xref: EMAPA:18817
xref: FMA:14518
xref: http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Illu_pancreas_duodenum.jpg/200px-Illu_pancreas_duodenum.jpg
xref: MA:0000121
xref: ncithesaurus:Body_of_the_Pancreas
xref: SCTID:362202004
xref: VHOG:0000451
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001151
name: tail of pancreas
def: "The tail of the pancreas, located anatomically left near the hilum of the spleen, is not simply an anatomical distinction. The tail is the only part of the pancreas which contains Pancreatic Polypeptide (PP) cells, which are responsible for secreting pancreatic polypeptide to coordinate exocrine and islet enzyme release. PP cells are found in the tail's periphery. Beta cells and delta cells are found in the central part of the tail as with the rest of the pancreas. The cells described above are located exclusively in the islet cells; their secretions reach exocrine portions of the pancreas via the capillary network surrounding the islet cell populations. [WP,unvetted]." [Wikipedia:Tail_of_pancreas]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cauda pancreatis" RELATED LATIN [Wikipedia:Tail_of_pancreas]
synonym: "left extremity of pancreas" EXACT [FMA:14519]
synonym: "pancreas tail" EXACT []
synonym: "pancreatic tail" EXACT [FMA:14519]
xref: EHDAA2:0001390
xref: EMAPA:17511
xref: EMAPA:18824
xref: FMA:14519
xref: http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Illu_pancreas_duodenum.jpg/200px-Illu_pancreas_duodenum.jpg
xref: MA:0000123
xref: ncithesaurus:Tail_of_the_Pancreas
xref: SCTID:245382003
xref: VHOG:0000452
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0009708 {source="EHDAA2"} ! dorsal pancreas
relationship: part_of UBERON:0001264 {source="FMA"} ! pancreas
[Term]
id: UBERON:0001152
name: cystic duct
def: "The cystic duct is the short duct that joins the gall bladder to the common bile duct. It usually lies next to the cystic artery. It is of variable length. It contains a 'spiral valve', which does not provide much resistance to the flow of bile. [WP,unvetted]." [Wikipedia:Cystic_duct]
subset: uberon_slim
subset: vertebrate_core
synonym: "ductus cysticus" RELATED LATIN [Wikipedia:Cystic_duct]
xref: EHDAA2:0000333
xref: EHDAA:3045
xref: EMAPA:16841
xref: FMA:14539
xref: GAID:290
xref: galen:CysticDuct
xref: http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: MA:0000355
xref: MESH:A.03.159.183.419
xref: ncithesaurus:Cystic_Duct
xref: OpenCyc:Mx4rveBeC5wpEbGdrcN5Y29ycA
xref: SCTID:245398005
xref: TAO:0005166
xref: VHOG:0000213
xref: ZFA:0005166
property_value: UBPROP:0000001 "Duct that connects the gall bladder and the common bile duct.[TAO]" xsd:string
is_a: UBERON:0003703 {source="FMA"} ! extrahepatic bile duct
relationship: channel_for UBERON:0001970 ! bile
relationship: channels_into UBERON:0001174 ! common bile duct
relationship: continuous_with UBERON:0001174 ! common bile duct
relationship: continuous_with UBERON:0002110 ! gallbladder
relationship: develops_from UBERON:0005604 {source="EHDAA2"} ! hepatic duct extrahepatic part
relationship: part_of UBERON:0001173 {source="FMA"} ! biliary tree
[Term]
id: UBERON:0001153
name: caecum
def: "Pouch, connecting the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction." [Wikipedia:Cecum]
comment: A cecum is present in most amniote species, and also in lungfish, but not in any living species of amphibian. In reptiles, it is usually a single median structure, arising from the dorsal side of the large intestine. Birds typically have two paired ceca, as, unlike other mammals, do hyraxes. Most mammalian herbivores have a relatively large cecum, hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose; in many species, it is considerably wider than the colon. In contrast, obligatory carnivores, whose diets contain little or no plant material, have a reduced cecum, which is often partially or wholly replaced by the vermiform appendix. Many fish have a number of small outpocketings, called pyloric ceca, along their intestine; despite the name they are not homologous with the cecum of amniotes, and their purpose is to increase the overall area of the digestive epithelium.[2] Some invertebrates, such as squid,[3] may also have structures with the same name, but these have no relationship with those of vertebrates.[WP]
subset: uberon_slim
synonym: "blind intestine" RELATED [BTO:0000166]
synonym: "blindgut" RELATED [BTO:0000166]
synonym: "cecum" EXACT [FMA:14541]
synonym: "intestinum caecum" RELATED [BTO:0000166]
synonym: "intestinum crassum caecum" EXACT []
synonym: "intestinum crassum cecum" RELATED [BTO:0000166]
xref: BTO:0000166
xref: EFO:0000850
xref: EHDAA2:0000206
xref: EHDAA:3913
xref: EV:0100397
xref: FMA:14541
xref: GAID:307
xref: galen:Cecum
xref: http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Stomach_colon_rectum_diagram.svg/200px-Stomach_colon_rectum_diagram.svg.png
xref: MA:0000334
xref: MESH:A.03.492.411.495.209
xref: MIAA:0000288
xref: ncithesaurus:Cecum
xref: OpenCyc:Mx4rve6u4JwpEbGdrcN5Y29ycA
xref: SCTID:181256004
xref: VHOG:0001559
property_value: RO:0002161 NCBITaxon:32443
is_a: UBERON:0009854 ! digestive tract diverticulum
relationship: continuous_with UBERON:0001156 {source="Wikipedia"} ! ascending colon
relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut
relationship: part_of UBERON:0000059 {source="MA"} ! large intestine
relationship: part_of UBERON:0001155 {source="EHDAA2"} ! colon
[Term]
id: UBERON:0001154
name: appendix
def: "Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix[FMA]. a narrowed, thickened, lymphoid-rich caecal apex [Fisher 2000]." [FMA:14542, Wikipedia:Vermiform_appendix]
subset: organ_slim
subset: uberon_slim
synonym: "apex of cecum" RELATED []
synonym: "appendix vermiformis" EXACT [FMA:14542, FMA:TA]
synonym: "appendix vermiformis" RELATED LATIN [Wikipedia:Vermiform_appendix]
synonym: "caecal appendix" EXACT []
synonym: "vermiform appendix" EXACT []
synonym: "vermix" EXACT []
xref: BTO:0000084
xref: EFO:0000849
xref: EHDAA2:0000588
xref: EV:0100076
xref: EV:0100080
xref: FMA:14542
xref: GAID:308
xref: galen:AppendixVermiformis
xref: http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ad/Gray536.png/200px-Gray536.png
xref: MA:0001540
xref: MAT:0000287
xref: MESH:A.03.492.411.495.209.290
xref: MIAA:0000287
xref: ncithesaurus:Vermiform_Appendix
xref: OpenCyc:Mx4rvVjGgJwpEbGdrcN5Y29ycA
xref: SCTID:181255000
xref: VHOG:0001306
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut
relationship: part_of UBERON:0001153 {source="MA"} ! caecum
relationship: part_of UBERON:0004907 {source="FMA"} ! lower digestive tract
[Term]
id: UBERON:0001155
name: colon
def: "Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005." [Wikipedia:Colon_(anatomy), ZFIN:curator]
comment: TODO: abstract this such that it legitimately covers all vertebrates
subset: uberon_slim
subset: vertebrate_core
synonym: "hindgut" RELATED []
synonym: "large bowel" EXACT []
synonym: "posterior intestine" NARROW []
synonym: "posterior intestine - zebrafish" BROAD []
xref: AAO:0010400
xref: BTO:0000269
xref: EFO:0000361
xref: EHDAA2:0000779
xref: EMAPA:18939
xref: EV:0100079
xref: FMA:14543
xref: GAID:309
xref: galen:Colon
xref: MA:0000335
xref: MAP:0000001
xref: MAT:0000526
xref: MESH:A.03.492.411.495.356
xref: ncithesaurus:Colon
xref: OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA
xref: SCTID:302508007
xref: TAO:0000706
xref: VHOG:0000648
xref: XAO:0000243
xref: ZFA:0000706
property_value: UBPROP:0000001 "The last portion of the digestive system, it extracts water and salt from solid wastes before they are eliminated from the body.[AAO]" xsd:string
property_value: UBPROP:0000001 "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005.[TAO]" xsd:string
is_a: UBERON:0000063 {source="FMA"} ! organ segment
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000059 {source="FMA"} ! large intestine
[Term]
id: UBERON:0001156
name: ascending colon
def: "Organ part which is continuous with the cecum proximally and the transverse colon distally.[FMA]" [FMA:FMA, Wikipedia:Ascending_colon]
comment: Note that in MA, this is a subclass of colon
subset: uberon_slim
synonym: "colon ascendens" RELATED LATIN [Wikipedia:Ascending_colon]
xref: BTO:0000270
xref: EFO:0000843
xref: FMA:14545
xref: galen:AscendingColon
xref: http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png
xref: MA:0001541
xref: MAT:0000311
xref: MIAA:0000311
xref: ncithesaurus:Ascending_Colon
xref: OpenCyc:Mx4rv3H0FZwpEbGdrcN5Y29ycA
xref: SCTID:362162009
is_a: UBERON:0000168 {source="FMA"} ! segment of colon
relationship: continuous_with UBERON:0001157 ! transverse colon
relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut
[Term]
id: UBERON:0001157
name: transverse colon
def: "The transverse colon the longest and most movable part of the colon, passes with a downward convexity from the right hypochondrium region across the abdomen, opposite the confines of the epigastric and umbilical zones, into the left hypochondrium region, where it curves sharply on itself beneath the lower end of the spleen, forming the splenic or left colic flexure. The right colic flexure is adjacent to the liver. In its course, it describes an arch, the concavity of which is directed backward and a little upward; toward its splenic end there is often an abrupt U-shaped curve which may descend lower than the main curve. It is almost completely invested by peritoneum, and is connected to the inferior border of the pancreas by a large and wide duplicature of that membrane, the transverse mesocolon. It is in relation, by its upper surface, with the liver and gall-bladder, the greater curvature of the stomach, and the lower end of the spleen; by its under surface, with the small intestine; by its anterior surface, with the anterior layers of the greater omentum and the abdominal parietes; its posterior surface is in relation from right to left with the descending portion of the duodenum, the head of the pancreas, and some of the convolutions of the jejunum and ileum. [WP,unvetted]." [Wikipedia:Transverse_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "colon transversum" RELATED LATIN [Wikipedia:Transverse_colon]
xref: BTO:0000272
xref: EFO:0000844
xref: FMA:14546
xref: galen:TransverseColon
xref: http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png
xref: MA:0001543
xref: MAT:0000312
xref: MIAA:0000312
xref: ncithesaurus:Transverse_Colon
xref: OpenCyc:Mx4rvg7qyJwpEbGdrcN5Y29ycA
xref: SCTID:362163004
is_a: UBERON:0000168 {source="FMA"} ! segment of colon
relationship: continuous_with UBERON:0001158 ! descending colon
relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut
[Term]
id: UBERON:0001158
name: descending colon
def: "The descending colon of humans passes downward through the left hypochondrium and lumbar regions, along the lateral border of the left kidney. At the lower end of the kidney it turns medialward toward the lateral border of the psoas muscle, and then descends, in the angle between psoas and quadratus lumborum, to the crest of the ilium, where it ends in the sigmoid colon. The peritoneum covers its anterior surface and sides, and therefore the descending colon is described as retroperitoneal. (The transverse colon and sigmoid colon, which are immediately proximal and distal, are intraperitoneal). Its posterior surface is connected by areolar tissue with the lower and lateral part of the left kidney, the aponeurotic origin of the transversus abdominis, and the quadratus lumborum. It is smaller in caliber and more deeply placed than the ascending colon. It has a mesentery in 33% of people, and is therefore more frequently covered with peritoneum on its posterior surface than the ascending colon (which has a mesentery in 25% of people). However, it is less likely to undergo volvulus than the ascending colon. In front of it are some coils of small intestine. [WP,unvetted]." [Wikipedia:Descending_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "colon descendens" RELATED LATIN [Wikipedia:Descending_colon]
xref: BTO:0000641
xref: EFO:0000845
xref: FMA:14547
xref: galen:DescendingColon
xref: http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray1223.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ca/Gray1223.png/200px-Gray1223.png
xref: MA:0001542
xref: MAT:0000313
xref: MIAA:0000313
xref: ncithesaurus:Descending_Colon
xref: OpenCyc:Mx4rwHsNhpwpEbGdrcN5Y29ycA
xref: SCTID:362165006
is_a: UBERON:0000168 {source="FMA"} ! segment of colon
relationship: continuous_with UBERON:0001159 ! sigmoid colon
relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut
[Term]
id: UBERON:0001159
name: sigmoid colon
def: "the part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity." [Wikipedia:Sigmoid_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "colon sigmoideum" RELATED []
synonym: "colon sigmoideum" RELATED LATIN [Wikipedia:Sigmoid_colon]
synonym: "pelvic colon" RELATED []
synonym: "sigmoid colon" RELATED []
synonym: "sigmoid flexure" RELATED []
xref: BTO:0000645
xref: EFO:0000846
xref: FMA:14548
xref: galen:SigmoidColon
xref: http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png
xref: MAT:0000314
xref: MESH:A.03.492.411.495.356.668
xref: MIAA:0000314
xref: ncithesaurus:Sigmoid_Colon
xref: ncithesaurus:Sigmoid_Flexure
xref: OpenCyc:Mx4rwHX_-5wpEbGdrcN5Y29ycA
xref: SCTID:362166007
is_a: UBERON:0000168 {source="FMA"} ! segment of colon
relationship: continuous_with UBERON:0001052 ! rectum
relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut
[Term]
id: UBERON:0001160
name: fundus of stomach
def: "The fundus is the portion of the stomach that lies above the cardiac notch, and contains the fundic glands[GO, Kardong]." [GO:0014825, ISBN10:0073040584, Wikipedia:Fundus_%28stomach%29]
subset: uberon_slim
synonym: "fundus gastricus" RELATED [BTO:0000502]
synonym: "fundus gastricus (ventricularis)" EXACT []
synonym: "fundus gastricus ventricularis" RELATED [BTO:0000502]
synonym: "fundus ventricularis" RELATED [BTO:0000502]
synonym: "fundus ventriculi" RELATED [BTO:0000502]
synonym: "gastric fundus" EXACT []
synonym: "stomach fundus" EXACT []
xref: BTO:0000502
xref: EFO:0002554
xref: EHDAA2:0001919
xref: EHDAA:4844
xref: FMA:14559
xref: GAID:320
xref: galen:GastricFundus
xref: http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0001612
xref: MESH:A.03.492.766.419
xref: ncithesaurus:Fundus_of_the_Stomach
xref: SCTID:362139007
xref: VHOG:0000421
is_a: UBERON:0009870 ! zone of stomach
relationship: has_part UBERON:0010038 ! fundic gastric gland
[Term]
id: UBERON:0001161
name: body of stomach
def: "The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]." [GO:0014845, Wikipedia:Body_of_stomach]
comment: Note that we include this as zone of stomach even though it is not distinguished by gland type
subset: uberon_slim
synonym: "corpus gastricum" RELATED LATIN [Wikipedia:Body_of_stomach]
synonym: "corpus gastricum" RELATED [BTO:0000505]
synonym: "corpus gastricum (ventriculare)" EXACT []
synonym: "corpus ventriculare" RELATED [BTO:0000505]
synonym: "corpus ventriculi" RELATED [BTO:0000505]
synonym: "gastric body" EXACT []
synonym: "gastric corpus" RELATED []
synonym: "stomach body" EXACT []
xref: BTO:0000505
xref: FMA:14560
xref: galen:GastricCorpus
xref: http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0002559
xref: ncithesaurus:Body_of_Stomach
xref: SCTID:362140009
is_a: UBERON:0009870 {source="FMA"} ! zone of stomach
[Term]
id: UBERON:0001162
name: cardia of stomach
alt_id: UBERON:0004712
def: "The opening of the esophagus into the stomach; also: the part of the stomach adjoining this opening[BTO]. The cardia is the anatomical term for the part of the stomach attached to the esophagus. The cardia begins immediately distal to the z-line of the gastroeosphageal junction, where the squamous epithelium of the esophagus gives way to the columnar epithelium of the gastrointestinal tract[WP]" [BTO:0000198, Wikipedia:Cardia]
comment: Editor notes: We follow Kardong in defining stomach regions by glands. Boundary notes: There were previously conflicting statements in the academic anatomy community[10][11][12] over whether the cardia is part of the stomach, part of the esophagus or a distinct entity. Modern surgical and medical textbooks have agreed that "The gastric cardia is now clearly considered to be part of the stomach"[13][14]. Classical anatomy textbooks, and some other resources[15], describe the cardia as the first of 4 regions of the stomach. This makes sense histologically because the mucosa of the cardia is the same as that of the stomach[WP].
synonym: "antrum cardiacum" RELATED [Wikipedia:Cardia]
synonym: "cardiac orifice" RELATED [Wikipedia:Cardia]
synonym: "cardiac region" RELATED [Wikipedia:Cardia]
synonym: "cardiac sphincter" RELATED [Wikipedia:Cardia]
synonym: "cardial orifice" RELATED [Wikipedia:Cardia]
synonym: "cardial part of stomach" EXACT []
synonym: "esophageal sphincter" RELATED [Wikipedia:Cardia]
synonym: "esophageal sphincter%2c lower" RELATED [Wikipedia:Cardia]
synonym: "esophageal-cardiac junction" RELATED [Wikipedia:Cardia]
synonym: "esophagogastric junction" RELATED [Wikipedia:Cardia]
synonym: "gastric cardia" EXACT []
synonym: "gastro-esophageal junction" RELATED [Wikipedia:Cardia]
synonym: "gastro-esophageal sphincter" RELATED [Wikipedia:Cardia]
synonym: "gastro-oesophageal junction" RELATED [Wikipedia:Cardia]
synonym: "gastroesophageal junction" RELATED [Wikipedia:Cardia]
synonym: "gastroesophageal sphincter" RELATED [Wikipedia:Cardia]
synonym: "lower esophageal sphincter" RELATED [Wikipedia:Cardia]
synonym: "pars cardiaca (gaster)" EXACT []
synonym: "pars cardiaca gastricae" EXACT [FMA:14561, FMA:TA]
synonym: "stomach cardiac region" EXACT [MA:0001609]
xref: BTO:0000198
xref: FMA:14561
xref: GAID:319
xref: http://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Illu_stomach.jpg/200px-Illu_stomach.jpg
xref: MA:0001609
xref: MESH:A.03.492.766.163
xref: ncithesaurus:Cardia
is_a: UBERON:0009870 ! zone of stomach
relationship: has_part UBERON:0008859
intersection_of: UBERON:0009870 ! zone of stomach
intersection_of: has_part UBERON:0008859 ! cardiac gastric gland
relationship: continuous_with UBERON:0001043 ! esophagus
relationship: continuous_with UBERON:0001161 ! body of stomach
relationship: has_part UBERON:0008859 ! cardiac gastric gland
[Term]
id: UBERON:0001163
name: lesser curvature of stomach
def: "The lesser curvature of the stomach, extending between the cardiac and pyloric orifices, forms the right or posterior border of the stomach. It descends as a continuation of the right margin of the esophagus in front of the fibers of the right crus of the diaphragm, and then, turning to the right, it crosses the first lumbar vertebra and ends at the pylorus. Nearer its pyloric than its cardiac end is a well-marked notch, the incisura angularis, which varies somewhat in position with the state of distension of the viscus; it serves to separate the stomach into a right and a left portion. The lesser curvature gives attachment to the two layers of the hepatogastric ligament, and between these two layers are the left gastric artery and the right gastric branch of the hepatic artery. [WP,unvetted]." [Wikipedia:Lesser_curvature_of_stomach]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "stomach lesser curvature" EXACT []
xref: FMA:14572
xref: galen:LesserCurvatureOfStomach
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0001616
xref: ncithesaurus:Lesser_Curvature
xref: SCTID:362133008
is_a: UBERON:0009870 {source="FMA"} ! zone of stomach
[Term]
id: UBERON:0001164
name: greater curvature of stomach
def: "The greater curvature of the stomach is directed mainly forward, and is four or five times as long as the lesser curvature. [WP,unvetted]." [Wikipedia:Greater_curvature_of_stomach]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "stomach greater curvature" EXACT []
xref: FMA:14574
xref: galen:GreaterCurvatureOfStomach
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0001615
xref: ncithesaurus:Greater_Curvature
xref: SCTID:362134002
is_a: UBERON:0009870 {source="FMA"} ! zone of stomach
[Term]
id: UBERON:0001165
name: pyloric antrum
def: "Pyloric antrum (antrum, lesser cul-de-sac) is the initial portion of the pyloric part of the stomach. It is near the bottom of the stomach on the left side of the pyloric sphincter, which separates the stomach and the duodenum. It may temporarily become partially or completely shut off from the remainder of the stomach during digestion by peristaltic contraction of the prepyloric sphincter; it is demarcated, sometimes, from the second part of the pyloric part of the stomach by a slight groove. [WP,unvetted]." [Wikipedia:Pyloric_antrum]
subset: uberon_slim
synonym: "antrum of stomach" EXACT []
synonym: "antrum of Willis" RELATED [BTO:0001732]
synonym: "antrum pylori" RELATED [BTO:0001732]
synonym: "antrum pyloricum" RELATED LATIN [Wikipedia:Pyloric_antrum]
synonym: "antrum pyloricum" RELATED [BTO:0001732]
synonym: "gastric antrum" RELATED [BTO:0001732]
synonym: "stomach antrum" RELATED []
synonym: "stomach pyloric antrum" EXACT []
xref: BTO:0001732
xref: EFO:0002555
xref: EMAPA:17891
xref: EMAPA:18919
xref: FMA:14579
xref: GAID:332
xref: galen:PyloricAntrum
xref: http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0001624
xref: MESH:A.03.492.766.716
xref: ncithesaurus:Antrum_Pylori
xref: SCTID:362142001
is_a: UBERON:0009870 {source="FMA"} ! zone of stomach
relationship: continuous_with UBERON:0001161 ! body of stomach
relationship: part_of UBERON:0001166 {source="Wikipedia"} ! pylorus
[Term]
id: UBERON:0001166
name: pylorus
def: "The region of the stomach that connects to the duodenum. It is divided in two parts: the pyloric antrum, which connects to the body of the stomach. the pyloric canal, which connects to the duodenum. The pyloric sphincter, or valve, is a strong ring of smooth muscle at the end of the pyloric canal and lets food pass from the stomach to the duodenum. It receives sympathetic innervation from celiac ganglion. [WP,unvetted]." [Wikipedia:Pylorus]
comment: Editor notes: We follow Kardong in defining stomach regions by glands
subset: uberon_slim
synonym: "pars pylorica gastricae" EXACT [FMA:14581, FMA:TA]
synonym: "pyloric part of stomach" EXACT []
synonym: "pyloric region" EXACT []
synonym: "stomach pyloric region" EXACT []
synonym: "stomach pyloric region" EXACT [EHDAA2:0001580]
synonym: "valvula pylori" RELATED LATIN [Wikipedia:Pylorus]
xref: BTO:0001146
xref: EHDAA2:0001580
xref: EHDAA:4860
xref: EMAPA:17631
xref: EMAPA:18915
xref: FMA:14581
xref: GAID:333
xref: galen:Pylorus
xref: http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0002560
xref: MESH:A.03.492.766.799
xref: ncithesaurus:Pylorus
xref: SCTID:362143006
xref: VHOG:0000420
is_a: UBERON:0009870 ! zone of stomach
relationship: has_part UBERON:0001165
relationship: has_part UBERON:0008858
relationship: has_part UBERON:0008861
intersection_of: UBERON:0009870 ! zone of stomach
intersection_of: has_part UBERON:0001165 ! pyloric antrum
intersection_of: has_part UBERON:0008858 ! pyloric canal
intersection_of: has_part UBERON:0008861 ! pyloric gastric gland
relationship: has_part UBERON:0001165 ! pyloric antrum
relationship: has_part UBERON:0008858 ! pyloric canal
relationship: has_part UBERON:0008861 ! pyloric gastric gland
[Term]
id: UBERON:0001167
name: wall of stomach
def: "An anatomical wall that is part of a stomach [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of stomach" EXACT [OBOL:automatic]
synonym: "anatomical wall of ventriculus" EXACT [OBOL:automatic]
synonym: "gastric wall" EXACT []
synonym: "stomach anatomical wall" EXACT [OBOL:automatic]
synonym: "stomach wall" EXACT []
synonym: "ventriculus anatomical wall" EXACT [OBOL:automatic]
synonym: "ventriculus wall" EXACT [OBOL:automatic]
synonym: "wall of ventriculus" EXACT [OBOL:automatic]
xref: FMA:14582
xref: galen:WallOfStomach
xref: MA:0002692
xref: SCTID:279995000
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000945
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001168
name: wall of small intestine
def: "An anatomical wall that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of small bowel" EXACT [OBOL:automatic]
synonym: "anatomical wall of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "small bowel wall" EXACT [OBOL:automatic]
synonym: "small intestinal wall" EXACT []
synonym: "small intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "small intestine wall" EXACT []
synonym: "wall of small bowel" EXACT [OBOL:automatic]
xref: FMA:14615
xref: MA:0002696
xref: ncithesaurus:Small_Intestinal_Wall_Tissue
is_a: UBERON:0001262 ! wall of intestine
relationship: part_of UBERON:0002108
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001169
name: wall of large intestine
def: "An anatomical wall that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of large intestine" EXACT [OBOL:automatic]
synonym: "large intestinal wall" EXACT []
synonym: "large intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "large intestine wall" EXACT []
xref: FMA:14619
xref: MA:0002695
is_a: UBERON:0001262 ! wall of intestine
relationship: part_of UBERON:0000059
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001262 ! wall of intestine
[Term]
id: UBERON:0001170
name: mesentery of small intestine
def: "the peritoneum responsible for connecting the jejunum and ileum (parts of the small intestine) to the back wall of the abdomen. Between the two sheets of peritoneum are blood vessels, lymph vessels, and nerves. This allows these parts of the small intestine to move relatively freely within the abdominopelvic cavity. The brain, however, cannot map sensation accurately, so sensation is usually referred to the midline, an example of referred pain[WP]." [Wikipedia:Mesentery#Mesentery_.28proper.29]
synonym: "mesentery (proper)" EXACT [Wikipedia:Mesentery]
synonym: "mesentery proper" EXACT [FMA:14643]
synonym: "small intestinal mesentery" EXACT [FMA:14643]
synonym: "small intestine mesentery" EXACT [Obol:automatic]
xref: FMA:14643
xref: MA:0001555
xref: SCTID:245456008
is_a: UBERON:0001206 ! serosa of small intestine
is_a: UBERON:0004854 ! gastrointestinal system mesentery
is_a: UBERON:0007826 {source="FMA"} ! peritoneal mesentery
relationship: part_of UBERON:0002108
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001171
name: portal lobule
def: "the triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [MP:0008992]
comment: This class was created automatically from a combination of ontologies
xref: FMA:14653
xref: MA:0002498
xref: ncithesaurus:Portal_Lobule
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001280 ! liver parenchyma
[Term]
id: UBERON:0001172
name: hepatic acinus
comment: This class was created automatically from a combination of ontologies
synonym: "liver acinus" EXACT []
synonym: "portal acinus" EXACT []
xref: FMA:14654
xref: MA:0002496
xref: ncithesaurus:Liver_Acinus
xref: SCTID:272214009
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0009842 {source="FMA"} ! acinus
relationship: part_of UBERON:0001171 ! portal lobule
relationship: part_of UBERON:0004647 ! liver lobule
[Term]
id: UBERON:0001173
name: biliary tree
def: "Hollow tree organ, the organ parts of which consists of the bile ducts[FMA]." [FMA:14665, Wikipedia:Biliary_tract]
subset: organ_slim
subset: uberon_slim
synonym: "biliary tract" EXACT []
xref: AAO:0011020
xref: FMA:14665
xref: GAID:279
xref: MA:0001273
xref: MESH:A.03.159
xref: ncithesaurus:Biliary_Tract
xref: SCTID:181267003
xref: XAO:0000455
property_value: UBPROP:0000001 "Hollow tree organ, the organ parts of which consist of the bile ducts.[AAO]" xsd:string
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0004912 ! biliary bud
relationship: part_of UBERON:0002294 ! biliary system
[Term]
id: UBERON:0001174
name: common bile duct
def: "a tube-like anatomic structure in the human gastrointestinal tract. It is formed by the union of the common hepatic duct and the cystic duct (from the gall bladder). It is later joined by the pancreatic duct to form the ampulla of Vater. There, the two ducts are surrounded by the muscular sphincter of Oddi." [Wikipedia:Common_bile_duct]
subset: uberon_slim
subset: vertebrate_core
synonym: "ductus choledochus" RELATED LATIN [Wikipedia:Common_bile_duct]
synonym: "ductus choledochus (biliaris)" EXACT []
xref: EHDAA2:0000303
xref: EHDAA:3981
xref: EMAPA:17201
xref: FMA:14667
xref: GAID:282
xref: galen:CommonBileDuct
xref: http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: MA:0001631
xref: MESH:A.03.159.183.079.300
xref: ncithesaurus:Common_Bile_Duct
xref: SCTID:362199009
xref: TAO:0005165
xref: VHOG:0000214
xref: ZFA:0005165
property_value: UBPROP:0000001 "Digestive system duct that collects bile from the hepatic bile duct and the cystic duct.[TAO]" xsd:string
is_a: UBERON:0003703 ! extrahepatic bile duct
relationship: channel_for UBERON:0001970 ! bile
relationship: channels_into UBERON:0001064 ! ventral pancreatic duct
relationship: continuous_with UBERON:0001152 ! cystic duct
relationship: continuous_with UBERON:0001175 ! common hepatic duct
relationship: part_of UBERON:0001173 ! biliary tree
[Term]
id: UBERON:0001175
name: common hepatic duct
def: "Predominantly extrahepatic bile duct which is formed by the junction of the right and left hepatic ducts, which are predominantly intrahepatic, and, in turn, joins the cystic duct to form the common bile duct[GAID]. The common hepatic duct is the duct formed by the convergence of the right hepatic duct (which drains bile from the right functional lobe of the liver) and the left hepatic duct (which drains bile from the left functional lobe of the liver). The common hepatic duct then joins the cystic duct coming from the gallbladder to form the common bile duct[WP]." [Wikipedia:Common_hepatic_duct, ZFIN:curator]
comment: TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same. Common is part of extra-hepatic part
subset: uberon_slim
synonym: "ductus hepaticus communis" RELATED LATIN [Wikipedia:Common_hepatic_duct]
synonym: "hepatic duct" RELATED []
xref: EMAPA:19101
xref: FMA:14668
xref: GAID:286
xref: http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Illu_liver_gallbladder.jpg/200px-Illu_liver_gallbladder.jpg
xref: MA:0002660
xref: MESH:A.03.159.183.079.600
xref: ncithesaurus:Common_Hepatic_Duct
xref: SCTID:245403006
xref: VHOG:0000220
is_a: UBERON:0003703 {source="FMA"} ! extrahepatic bile duct
relationship: channel_for UBERON:0001970 ! bile
relationship: channels_into UBERON:0001174 ! common bile duct
relationship: continuous_with UBERON:0001176 {source="Wikipedia"} ! right hepatic duct
relationship: continuous_with UBERON:0001177 {source="Wikipedia"} ! left hepatic duct
relationship: develops_from UBERON:0010081 {evidence="definitional"} ! future common hepatic duct
relationship: part_of UBERON:0005604 {source="MA"} ! hepatic duct extrahepatic part
[Term]
id: UBERON:0001176
name: right hepatic duct
def: "The duct that drains bile from the right half of the liver and joins the left hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26034]
comment: This class was created automatically from a combination of ontologies
xref: EHDAA2:0001727
xref: EHDAA:3992
xref: EMAPA:18305
xref: EMAPA:19100
xref: FMA:14669
xref: MA:0001639
xref: ncithesaurus:Right_Hepatic_Duct
xref: SCTID:245401008
xref: VHOG:0000217
is_a: UBERON:0003703 ! extrahepatic bile duct
relationship: continuous_with UBERON:0001114
intersection_of: UBERON:0003703 ! extrahepatic bile duct
intersection_of: continuous_with UBERON:0001114 ! right lobe of liver
relationship: continuous_with UBERON:0001114 ! right lobe of liver
relationship: part_of UBERON:0005171 ! hepatic duct
[Term]
id: UBERON:0001177
name: left hepatic duct
def: "The duct that drains bile from the left half of the liver and joins the right hepatic duct to form the common hepatic duct." [http://www.medterms.com/script/main/art.asp?articlekey=26035]
xref: EHDAA2:0000941
xref: EHDAA:3990
xref: EMAPA:18304
xref: EMAPA:19099
xref: FMA:14670
xref: MA:0001638
xref: ncithesaurus:Left_Hepatic_Duct
xref: SCTID:245400009
xref: VHOG:0000218
is_a: UBERON:0003703 ! extrahepatic bile duct
relationship: continuous_with UBERON:0001115
intersection_of: UBERON:0003703 ! extrahepatic bile duct
intersection_of: continuous_with UBERON:0001115 ! left lobe of liver
relationship: continuous_with UBERON:0001115 ! left lobe of liver
relationship: part_of UBERON:0005171 ! hepatic duct
[Term]
id: UBERON:0001178
name: visceral peritoneum
def: "The peritoneum that covers the external surfaces of most abdominal organs." [Wikipedia:Visceral_peritoneum, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
xref: FMA:14703
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1040.png/200px-Gray1040.png
xref: SCTID:362702003
xref: TAO:0005132
xref: VHOG:0001528
xref: ZFA:0005132
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002358 ! peritoneum
[Term]
id: UBERON:0001179
name: peritoneal cavity
def: "Cavity of serous sac surrounded by the peritoneum.[FMA]" [FMA:FMA, Wikipedia:Peritoneal_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cavitas peritonealis" RELATED [BTO:0001782]
synonym: "cavitas peritonealis; saccus serosus peritonei" RELATED LATIN [Wikipedia:Peritoneal_cavity]
xref: BTO:0001782
xref: EHDAA2:0001446
xref: EMAPA:18452
xref: EMAPA:18454
xref: EMAPA:18461
xref: FMA:14704
xref: GAID:24
xref: MA:0000054
xref: MESH:A.01.047.025.600.678
xref: ncithesaurus:Peritoneal_Cavity
xref: SCTID:181616008
xref: VHOG:0000852
is_a: UBERON:0002323 ! body cavity
relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom
relationship: surrounded_by UBERON:0002358 ! peritoneum
[Term]
id: UBERON:0001180
name: superior recess of lesser sac
alt_id: UBERON:0006299
comment: AO notes: classified as a cavity in EHDAA2, organ segment in FMA. We hedge and use a union
synonym: "recessus superior bursae omentalis" EXACT [FMA:TA]
synonym: "recessus superior bursae omentalis" EXACT [FMA:14708, FMA:TA]
synonym: "recessus superior omentalis" EXACT [FMA:14708]
synonym: "superior omental bursa" EXACT [FMA:14708]
synonym: "superior recess" EXACT [EHDAA2:0001958]
synonym: "superior recess of omental bursa" EXACT [FMA:14708]
xref: EHDAA2:0001958
xref: EHDAA:2343
xref: EMAPA:18049
xref: FMA:14708
xref: MA:0000447
xref: SCTID:263190002
is_a: UBERON:0004458 ! body cavity or lining
relationship: develops_in UBERON:0005252 {source="EHDAA2"} ! omental bursa cavity
relationship: part_of UBERON:0001341 {source="EMAPA"} ! lesser sac
[Term]
id: UBERON:0001181
name: inferior recess of lesser sac
alt_id: UBERON:0006249
synonym: "inferior omental bursa" EXACT [FMA:14709]
synonym: "inferior recess" EXACT [EHDAA2:0000825]
synonym: "inferior recess of omental bursa" EXACT [FMA:14709]
synonym: "recessus inferior bursae omentalis" EXACT [FMA:14709, FMA:TA]
synonym: "recessus inferior bursae omentalis" EXACT [FMA:TA]
synonym: "recessus inferior omentalis" EXACT [FMA:14709]
xref: EHDAA2:0000825
xref: EHDAA:6083
xref: EMAPA:18048
xref: FMA:14709
xref: MA:0000446
xref: SCTID:263261002
is_a: UBERON:0004458 ! body cavity or lining
relationship: part_of UBERON:0001341 ! lesser sac
[Term]
id: UBERON:0001182
name: superior mesenteric artery
def: "In human anatomy, the superior mesenteric artery (SMA) arises from the anterior surface of the abdominal aorta, just inferior to the origin of the celiac trunk, and supplies the intestine from the lower part of the duodenum through two-thirds of the transverse colon, as well as the pancreas. [WP,unvetted]." [Wikipedia:Superior_mesenteric_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria mesenterica superior" RELATED LATIN [Wikipedia:Superior_mesenteric_artery]
synonym: "arteria mesenterica superior" RELATED [BTO:0002303]
synonym: "superior mesenteric arterial tree" EXACT []
xref: BTO:0002303
xref: EHDAA2:0001949
xref: EHDAA:3358
xref: EHDAA:5313
xref: EMAPA:18619
xref: FMA:14749
xref: GAID:502
xref: galen:SuperiorMesentericArtery
xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Superior_mesenteric_a.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Gray1099.png/200px-Gray1099.png
xref: MA:0002005
xref: MESH:A.07.231.114.565.755
xref: ncithesaurus:Superior_Mesenteric_Artery
xref: OpenCyc:Mx4rwE5KipwpEbGdrcN5Y29ycA
xref: SCTID:362048004
xref: VHOG:0000754
is_a: UBERON:0004573 ! systemic artery
relationship: develops_from UBERON:0006002 {source="Wikipedia"} ! vitelline artery
[Term]
id: UBERON:0001183
name: inferior mesenteric artery
def: "In human anatomy, the inferior mesenteric artery, often abbreviated as IMA, supplies the large intestine from the left colic (or splenic) flexure to the upper part of the rectum, which includes the descending colon, the sigmoid colon, and part of the rectum. Proximally, its territory of distribution overlaps (forms a watershed) with the middle colic artery, and therefore the superior mesenteric artery. The SMA and IMA anastomose via the marginal artery (artery of Drummond). The territory of distribution of the IMA is more or less equivalent to the embryonic hindgut. [WP,unvetted]." [Wikipedia:Inferior_mesenteric_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria mesenterica inferior" RELATED [BTO:0002302]
synonym: "arteria mesenterica inferior" RELATED LATIN [Wikipedia:Inferior_mesenteric_artery]
synonym: "inferior mesenteric arterial tree" EXACT []
xref: BTO:0002302
xref: EHDAA2:0000817
xref: EHDAA:4345
xref: EMAPA:18618
xref: FMA:14750
xref: GAID:501
xref: galen:InferiorMesentericArtery
xref: http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray538.png
xref: MA:0002004
xref: MESH:A.07.231.114.565.510
xref: ncithesaurus:Inferior_Mesenteric_Artery
xref: OpenCyc:Mx4rv-t-S5wpEbGdrcN5Y29ycA
xref: SCTID:181341006
xref: VHOG:0001116
is_a: UBERON:0004573 ! systemic artery
relationship: supplies UBERON:0000059 ! large intestine
[Term]
id: UBERON:0001184
name: renal artery
def: "The renal arteries normally arise off the side of the abdominal aorta, immediately below the superior mesenteric artery, and supply the kidneys with blood. Each is directed across the crus of the diaphragm, so as to form nearly a right angle with the aorta. The renal arteries carry a large portion of total blood flow to the kidneys. Up to a third of total cardiac output can pass through the renal arteries to be filtered by the kidneys. The arterial supply of the kidneys is variable and there may be one or more renal arteries supplying each kidney. It is located above the renal vein. It has a radius of approximately 0.25cm, 0.26 cm at the root. The measured mean diameter can differ depending on the imaging method used. For example, the diameter was found to be 5.04 ± 0.74 mm using ultrasound, but 5.68 ± 1.19 mm using angiography. [WP,unvetted]." [Wikipedia:Renal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "arteria renalis" RELATED LATIN [Wikipedia:Renal_artery]
synonym: "renal arterial tree" EXACT []
synonym: "renal arteries" RELATED []
xref: AAO:0010223
xref: BTO:0001165
xref: EFO:0002552
xref: EHDAA2:0004100
xref: EHDAA:5321
xref: EHDAA:8594
xref: EMAPA:17862
xref: EMAPA:28373
xref: FMA:14751
xref: GAID:507
xref: galen:RenalArtery
xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray1120.png/200px-Gray1120.png
xref: MA:0002035
xref: MESH:A.07.231.114.745
xref: ncithesaurus:Renal_Artery
xref: OpenCyc:Mx4rveOFHpwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0001600
xref: SCTID:181339005
xref: TAO:0000420
xref: ZFA:0000420
property_value: UBPROP:0000001 "Artery which supplies blood via branches to the gonads, oviducts, and kidneys.[AAO]" xsd:string
is_a: UBERON:0004573 ! systemic artery
relationship: supplies UBERON:0002113
intersection_of: UBERON:0001637 ! artery
intersection_of: supplies UBERON:0002113 ! kidney
relationship: supplies UBERON:0002113 ! kidney
[Term]
id: UBERON:0001185
name: right renal artery
def: "Renal artery that supplies the right kidney" [UBERON:cjm]
comment: The right [renal artery] passes behind the inferior vena cava, the right renal vein, the head of the pancreas, and the descending part of the duodenum[WP]
subset: uberon_slim
synonym: "right renal arterial tree" EXACT []
xref: FMA:14752
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray1120.png/200px-Gray1120.png
xref: MA:0002037
xref: ncithesaurus:Right_Renal_Artery
xref: OpenCyc:Mx4rtW8I0KgEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA
xref: SCTID:36800007
is_a: UBERON:0001184 ! renal artery
relationship: supplies UBERON:0004539
intersection_of: UBERON:0001184 ! renal artery
intersection_of: supplies UBERON:0004539 ! right kidney
relationship: supplies UBERON:0004539 ! right kidney
[Term]
id: UBERON:0001186
name: left renal artery
def: "Renal artery that supplies the left kidney" [UBERON:cjm]
comment: The left [renal artery] is somewhat higher than the right; it lies behind the left renal vein, the body of the pancreas and the splenic vein, and is crossed by the inferior mesenteric vein[WP]
synonym: "left renal arterial tree" EXACT []
xref: FMA:14753
xref: MA:0002036
xref: ncithesaurus:Left_Renal_Artery
xref: OpenCyc:Mx4rtW8I0agEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA
xref: SCTID:19215005
is_a: UBERON:0001184 ! renal artery
relationship: supplies UBERON:0004538
intersection_of: UBERON:0001184 ! renal artery
intersection_of: supplies UBERON:0004538 ! left kidney
relationship: supplies UBERON:0004538 ! left kidney
[Term]
id: UBERON:0001187
name: testicular artery
def: "The testicular artery (the male gonadal artery, also called the internal spermatic arteries in older texts) is a branch of the abdominal aorta that supplies blood to the testis. It is a paired artery, with one for each of the testes. It is the male equivalent of the ovarian artery. Because the testis is found in a different location than that of its female equivalent, it has a different course than the ovarian artery. They are two slender vessels of considerable length, and arise from the front of the aorta a little below the renal arteries. Each passes obliquely downward and lateralward behind the peritoneum, resting on the Psoas major, the right spermatic lying in front of the inferior vena cava and behind the middle colic and ileocolic arteries and the terminal part of the ileum, the left behind the left colic and sigmoid arteries and the iliac colon. Each crosses obliquely over the ureter and the lower part of the external iliac artery to reach the abdominal inguinal ring, through which it passes, and accompanies the other constituents of the spermatic cord along the inguinal canal to the scrotum, where it becomes tortuous, and divides into several branches. Two or three of these accompany the ductus deferens, and supply the epididymis, anastomosing with the artery of the ductus deferens; others pierce the back part of the tunica albuginea, and supply the substance of the testis. The internal spermatic artery supplies one or two small branches to the ureter, and in the inguinal canal gives one or two twigs to the Cremaster. [WP,unvetted]." [Wikipedia:Testicular_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria testicularis" RELATED LATIN [Wikipedia:Testicular_artery]
synonym: "testicular arterial tree" EXACT []
xref: EMAPA:18621
xref: FMA:14758
xref: http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png
xref: MA:0002063
xref: SCTID:244281003
is_a: UBERON:0004573 ! systemic artery
relationship: supplies UBERON:0000473
intersection_of: UBERON:0001637 ! artery
intersection_of: supplies UBERON:0000473 ! testis
relationship: supplies UBERON:0000473 ! testis
[Term]
id: UBERON:0001188
name: right testicular artery
comment: This class was created automatically from a combination of ontologies
synonym: "right spermatic artery" EXACT []
synonym: "trunk of right testicular arterial tree" EXACT []
xref: FMA:14759
xref: MA:0002042
xref: ncithesaurus:Right_Spermatic_Artery
is_a: UBERON:0001187 ! testicular artery
is_a: UBERON:0003468 ! ureteric segment of renal artery
relationship: supplies UBERON:0004534
intersection_of: UBERON:0001187 ! testicular artery
intersection_of: supplies UBERON:0004534 ! right testicle
relationship: supplies UBERON:0001222 ! right ureter
relationship: supplies UBERON:0004534 ! right testicle
[Term]
id: UBERON:0001189
name: left testicular artery
comment: This class was created automatically from a combination of ontologies
synonym: "left spermatic artery" EXACT []
synonym: "trunk of left testicular arterial tree" EXACT []
xref: FMA:14760
xref: MA:0002041
xref: ncithesaurus:Left_Spermatic_Artery
is_a: UBERON:0001187 ! testicular artery
is_a: UBERON:0003468 ! ureteric segment of renal artery
relationship: supplies UBERON:0004533
intersection_of: UBERON:0001187 ! testicular artery
intersection_of: supplies UBERON:0004533 ! left testicle
relationship: supplies UBERON:0001223 ! left ureter
relationship: supplies UBERON:0004533 ! left testicle
[Term]
id: UBERON:0001190
name: ovarian artery
def: "In human anatomy, the ovarian artery is a blood vessel that supplies oxygenated blood to the ovary. It arises from the abdominal aorta below the renal artery, and does not pass out of the abdominal cavity. It can be found in the suspensory ligament of the ovary. [WP,unvetted]." [Wikipedia:Ovarian_artery]
subset: uberon_slim
synonym: "arteria ovarica" RELATED LATIN [Wikipedia:Ovarian_artery]
synonym: "ovarian arterial tree" EXACT []
xref: EMAPA:18620
xref: FMA:14761
xref: http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray1170.png/200px-Gray1170.png
xref: MA:0002012
xref: ncithesaurus:Ovarian_Artery
xref: OpenCyc:Mx4rwOa9PZwpEbGdrcN5Y29ycA
xref: SCTID:244280002
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0010192 ! genital artery
relationship: overlaps UBERON:0000992 ! female gonad
[Term]
id: UBERON:0001191
name: common iliac artery
def: "The common iliac arteries are two large arteries, about 4cm long in adults but more than a centimetre in diameter, that originate from the aortic bifurcation. The arteries run inferolaterally, along the medial border of the psoas muscles to the pelvic brim, where they bifurcate into the external iliac artery and internal iliac artery. The common iliac artery, and all of its branches, exist as paired structures (that is to say, there is one on the left side and one on the right). The distribution of the common iliac artery is basically the pelvis and lower limb on the corresponding side. Both common iliac arteries are accompanied along their course by common iliac veins. [WP,unvetted]." [Wikipedia:Common_iliac_artery]
comment: See notes for parent class
subset: uberon_slim
synonym: "arteria iliaca communis" RELATED LATIN [Wikipedia:Common_iliac_artery]
synonym: "common iliac arterial tree" EXACT []
xref: EHDAA2:0000311
xref: EHDAA:2553
xref: EMAPA:17310
xref: FMA:14764
xref: http://upload.wikimedia.org/wikipedia/commons/6/6e/Iliac_artery_bifurcation_and_aorta.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Iliac_artery_bifurcation_and_aorta.PNG/200px-Iliac_artery_bifurcation_and_aorta.PNG
xref: MA:0001972
xref: ncithesaurus:Common_Iliac_Artery
xref: OpenCyc:Mx4rvkZ7ZpwpEbGdrcN5Y29ycA
xref: SCTID:362050007
is_a: UBERON:0005609 {source="MA"} ! iliac artery
relationship: develops_from UBERON:0005458 {source="EHDAA2", notes="requires review"} ! left umbilical artery
relationship: develops_from UBERON:0005470 {source="EHDAA2", notes="requires review"} ! right umbilical artery
[Term]
id: UBERON:0001192
name: left gastric artery
def: "In human anatomy, the left gastric artery arises from the celiac artery, and runs along the superior portion of the lesser curvature of the stomach. Branches also supply the lower esophagus. The left gastric artery anastomoses with the right gastric artery, which supplies the inferior portion. [WP,unvetted]." [Wikipedia:Left_gastric_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria gastrica sinistra" RELATED LATIN [Wikipedia:Left_gastric_artery]
synonym: "gastric artery" EXACT []
xref: FMA:14768
xref: galen:LeftGastricArtery
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray532.png/200px-Gray532.png
xref: MA:0001961
xref: ncithesaurus:Gastric_Artery
xref: OpenCyc:Mx4rwMjqKZwpEbGdrcN5Y29ycA
xref: SCTID:244267000
is_a: UBERON:0004573 ! systemic artery
relationship: part_of UBERON:0001640 ! celiac artery
relationship: supplies UBERON:0000945 ! stomach
[Term]
id: UBERON:0001193
name: hepatic artery
def: "." [Wikipedia:Hepatic_artery_proper]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "arteria hepatica propria" EXACT LATIN []
xref: BTO:0004307
xref: EMAPA:17859
xref: FMA:14769
xref: GAID:496
xref: galen:HepaticArtery
xref: http://upload.wikimedia.org/wikipedia/commons/4/4c/Common_and_proper_hepatic_artery.png
xref: MA:0001963
xref: MESH:A.07.231.114.407
xref: ncithesaurus:Hepatic_Artery
xref: OpenCyc:Mx4rvzKtFpwpEbGdrcN5Y29ycA
xref: SCTID:76015000
xref: TAO:0005161
xref: ZFA:0005161
property_value: UBPROP:0000001 "Artery that supplies blood to the liver.[TAO]" xsd:string
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003497 ! abdomen blood vessel
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0002107
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001194
name: splenic artery
def: "In anatomy, the splenic artery (in the past called the lienal artery) is the blood vessel that supplies oxygenated blood to the spleen. It branches from the celiac artery, and follows a course superior to the pancreas. [WP,unvetted]." [Wikipedia:Splenic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria splenica, arteria lienalis" RELATED LATIN [Wikipedia:Splenic_artery]
synonym: "lienal artery" EXACT []
xref: EMAPA:19216
xref: FMA:14773
xref: GAID:510
xref: galen:SplenicArtery
xref: http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Gray1188.png/200px-Gray1188.png
xref: MA:0001991
xref: MESH:A.07.231.114.814
xref: ncithesaurus:Splenic_Artery
xref: OpenCyc:Mx4rv0cb2ZwpEbGdrcN5Y29ycA
xref: SCTID:244266009
is_a: UBERON:0004573 ! systemic artery
relationship: part_of UBERON:0001640 ! celiac artery
[Term]
id: UBERON:0001195
name: inferior pancreaticoduodenal artery
def: "The inferior pancreaticoduodenal artery is a branch of the superior mesenteric artery or from its first intestinal branch, opposite the upper border of the inferior part of the duodenum. It courses to the right between the head of the pancreas and duodenum, and then ascends to anastomose with the anterior and posterior superior pancreaticoduodenal artery. It distributes branches to the head of the pancreas and to the descending and inferior parts of the duodenum. [WP,unvetted]." [Wikipedia:Inferior_pancreaticoduodenal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteriae pancreaticoduodenales inferiores" RELATED LATIN [Wikipedia:Inferior_pancreaticoduodenal_artery]
synonym: "inferior pancreatico-duodenal artery" EXACT []
xref: FMA:14805
xref: http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray533.png
xref: MA:0002014
xref: ncithesaurus:Inferior_Pancreatico-duodenal_artery
xref: SCTID:244273004
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0009658 ! pancreaticoduodenal artery
relationship: branch_of UBERON:0001182 ! superior mesenteric artery
relationship: part_of UBERON:0001182 ! superior mesenteric artery
[Term]
id: UBERON:0001196
name: middle colic artery
def: "The middle colic artery is a branch of the superior mesenteric artery that mostly supplies the transverse colon. It arises just below the pancreas, and, passing downward and forward between the layers of the transverse mesocolon, divides into two branches: right and left. The right branch anastomoses with the right colic artery The left branch anastomoses with the left colic artery, a branch of the inferior mesenteric artery. The arches thus formed are placed about two fingers’ breadth from the transverse colon, to which they distribute branches. [WP,unvetted]." [Wikipedia:Middle_colic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria colica media" RELATED LATIN [Wikipedia:Middle_colic_artery]
xref: FMA:14810
xref: galen:MiddleColicArtery
xref: http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray537.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Gray537.png/200px-Gray537.png
xref: MA:0002007
xref: ncithesaurus:Middle_Colic_Artery
xref: SCTID:244276007
is_a: UBERON:0004573 ! systemic artery
relationship: part_of UBERON:0001182 ! superior mesenteric artery
relationship: supplies UBERON:0000059 ! large intestine
[Term]
id: UBERON:0001197
name: ileocolic artery
def: "The Ileocolic Artery is the lowest branch arising from the concavity of the superior mesenteric artery. It passes downward and to the right behind the peritoneum toward the right iliac fossa, where it divides into a superior and an inferior branch; the inferior anastomoses with the end of the superior mesenteric artery, the superior with the right colic artery. Supplies the cecum, ileum, and appendix. [WP,unvetted]." [Wikipedia:Ileocolic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria ileocolica" RELATED LATIN [Wikipedia:Ileocolic_artery]
xref: FMA:14815
xref: galen:IleocolicArtery
xref: http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png
xref: MA:0001970
xref: ncithesaurus:Ileo-colic_Artery
xref: SCTID:244279000
is_a: UBERON:0004573 ! systemic artery
relationship: part_of UBERON:0001182 ! superior mesenteric artery
[Term]
id: UBERON:0001198
name: superior suprarenal artery
def: "Each (left and right) superior suprarenal artery is a branch of the inferior phrenic artery on that side of the body. The left and right phrenic arteries supply the diaphragm, and come off the aorta. [WP,unvetted]." [Wikipedia:Superior_suprarenal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteriae suprarenales superiores" RELATED LATIN [Wikipedia:Superior_suprarenal_artery]
synonym: "superior adrenal branch of inferior phrenic artery" EXACT []
synonym: "superior suprarenal branch of inferior phrenic artery" EXACT []
xref: FMA:14863
xref: http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png
xref: MA:0002057
xref: ncithesaurus:Superior_Suprarenal_Artery
xref: SCTID:303424001
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001199
name: mucosa of stomach
def: "The gastric mucosa is the mucous membrane layer of the stomach which contains the glands and the gastric pits. In men it is about 1 mm thick and its surface is smooth, soft, and velvety. It consists of epithelium, lamina propria, and the muscularis mucosae. In its fresh state, it is of a pinkish tinge at the pyloric end and of a red or reddish-brown color over the rest of its surface. In infancy it is of a brighter hue, the vascular redness being more marked. It is thin at the cardiac extremity, but thicker toward the pylorus. During the contracted state of the organ it is thrown into numerous plaits or rugae, which, for the most part, have a longitudinal direction, and are most marked toward the pyloric end of the stomach, and along the greater curvature. These folds are entirely obliterated when the organ becomes distended. When examined with a lens, the inner surface of the mucous membrane presents a peculiar honeycomb appearance from being covered with funnel-like depressions or foveolae of a polygonal or hexagonal form, which vary from 0.12 to 0.25 mm. in diameter. These are the ducts of the gastric glands, and at the bottom of each may be seen one or more minute orifices, the openings of the gland tubes. Gastric glands are simple or branched tubular glands that emerge on the deeper part of the gastric foveola, inside the gastric areas and outlined by the folds of the mucosa. There are three types of glands: cardiac glands (in the proximal part of the stomach), oxyntic glands (the dominating type of gland), and pyloric glands. The cardiac glands mainly contain mucus producing cells. The bottom part of the oxyntic glands is dominated by zymogen (chief) cells that produce pepsinogen (an inactive precursor of the pepsin enzyme). Parietal cells, which secrete hydrochloric acid are scattered in the glands, with most of them in the middle part. The upper part of the glands consist of mucous neck cells; in this part the dividing cells are seen. The pyloric glands contain mucus-secreting cells. Several types of endocrine cells are found in all regions of the gastric mucosa. In the pyloric glands contain gastrin producing cells (G cells); this hormone stimulates acid production from the parietal cells. ECL (enterochromaffine-like) cells, found in the oxyntic glands release histamine, which also is a powerful stimulant of the acid secretion. The A cells produce glucagon, which mobilizes the hepatic glycogen, and the enterochromaffin cells that produce serotonin, which stimulates the contraction of the smooth muscles. The surface of the mucous membrane is covered by a single layer of columnar epithelium . This epithelium commences very abruptly at the cardiac orifice, where there is a sudden transition from the stratified epithelium of the esophagus. The epithelial lining of the gland ducts is of the same character and is continuous with the general epithelial lining of the stomach. [WP,unvetted]." [Wikipedia:Gastric_mucosa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gastric mucosa" EXACT []
synonym: "gastric mucous membrane" EXACT []
synonym: "Magenschleimhaut" RELATED [BTO:0001308]
synonym: "mucosa of organ of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ventriculus" EXACT [OBOL:automatic]
synonym: "mucosa of ventriculus" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach" EXACT []
synonym: "mucous membrane of ventriculus" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of ventriculus" EXACT [OBOL:automatic]
synonym: "stomach mucosa" EXACT []
synonym: "stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa (gaster)" EXACT []
synonym: "tunica mucosa gastricae" EXACT [FMA:14907, FMA:TA]
synonym: "tunica mucosa gastris" RELATED LATIN [Wikipedia:Gastric_mucosa]
synonym: "tunica mucosa gastris" RELATED [BTO:0001308]
synonym: "ventriculus mucosa" EXACT [OBOL:automatic]
synonym: "ventriculus mucosa of organ" EXACT [OBOL:automatic]
synonym: "ventriculus mucous membrane" EXACT [OBOL:automatic]
synonym: "ventriculus organ mucosa" EXACT [OBOL:automatic]
xref: BTO:0001308
xref: FMA:14907
xref: GAID:321
xref: galen:GastricMucosa
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_stomach2.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Illu_stomach2.jpg/200px-Illu_stomach2.jpg
xref: MA:0002683
xref: MESH:A.03.492.766.440
xref: ncithesaurus:Gastric_Mucosa
xref: OpenCyc:Mx8NhB4rvcD6KJwpEbGdrcN5Y29ycB4rvmKNOpwpEbGdrcN5Y29ycB4rvVj5FpwpEbGdrcN5Y29ycB4rvVjlqpwpEbGdrcN5Y29ycA
xref: SCTID:362131005
is_a: UBERON:0004786 ! gastrointestinal system mucosa
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0000945
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001167 ! wall of stomach
[Term]
id: UBERON:0001200
name: submucosa of stomach
def: "A submucosa that is part of a stomach [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "gastric submucosa" EXACT []
synonym: "stomach submucosa" EXACT []
synonym: "submucosa of ventriculus" EXACT [OBOL:automatic]
synonym: "tela submucosa (gaster)" EXACT []
synonym: "ventriculus submucosa" EXACT [OBOL:automatic]
xref: BTO:0002110
xref: FMA:14908
xref: MA:0002685
xref: ncithesaurus:Gastric_Submucosa
xref: SCTID:52459002
is_a: UBERON:0000009 ! submucosa
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0000945
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001167 ! wall of stomach
[Term]
id: UBERON:0001201
name: serosa of stomach
def: "A serous membrane that is part of a wall of stomach [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "anatomical wall of stomach serosa" EXACT [OBOL:automatic]
synonym: "anatomical wall of stomach serous membrane" EXACT [OBOL:automatic]
synonym: "anatomical wall of ventriculus serosa" EXACT [OBOL:automatic]
synonym: "anatomical wall of ventriculus serous membrane" EXACT [OBOL:automatic]
synonym: "gastric serosa" RELATED []
synonym: "gastric wall serosa" EXACT [OBOL:automatic]
synonym: "gastric wall serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of anatomical wall of stomach" EXACT [OBOL:automatic]
synonym: "serosa of anatomical wall of ventriculus" EXACT [OBOL:automatic]
synonym: "serosa of gastric wall" EXACT [OBOL:automatic]
synonym: "serosa of stomach anatomical wall" EXACT [OBOL:automatic]
synonym: "serosa of stomach wall" EXACT [OBOL:automatic]
synonym: "serosa of ventriculus anatomical wall" EXACT [OBOL:automatic]
synonym: "serosa of ventriculus wall" EXACT [OBOL:automatic]
synonym: "serosa of wall of stomach" EXACT [OBOL:automatic]
synonym: "serosa of wall of ventriculus" EXACT [OBOL:automatic]
synonym: "serous coat of stomach" EXACT []
synonym: "serous membrane of anatomical wall of stomach" EXACT [OBOL:automatic]
synonym: "serous membrane of anatomical wall of ventriculus" EXACT [OBOL:automatic]
synonym: "serous membrane of gastric wall" EXACT [OBOL:automatic]
synonym: "serous membrane of stomach anatomical wall" EXACT [OBOL:automatic]
synonym: "serous membrane of stomach wall" EXACT [OBOL:automatic]
synonym: "serous membrane of ventriculus anatomical wall" EXACT [OBOL:automatic]
synonym: "serous membrane of ventriculus wall" EXACT [OBOL:automatic]
synonym: "serous membrane of wall of stomach" EXACT [OBOL:automatic]
synonym: "serous membrane of wall of ventriculus" EXACT [OBOL:automatic]
synonym: "stomach anatomical wall serosa" EXACT [OBOL:automatic]
synonym: "stomach anatomical wall serous membrane" EXACT [OBOL:automatic]
synonym: "stomach serosa" EXACT []
synonym: "stomach wall serosa" EXACT [OBOL:automatic]
synonym: "stomach wall serous membrane" EXACT [OBOL:automatic]
synonym: "tunica serosa (gaster)" EXACT []
synonym: "tunica serosa gastricae" EXACT [FMA:14914, FMA:TA]
synonym: "ventriculus anatomical wall serosa" EXACT [OBOL:automatic]
synonym: "ventriculus anatomical wall serous membrane" EXACT [OBOL:automatic]
synonym: "ventriculus wall serosa" EXACT [OBOL:automatic]
synonym: "ventriculus wall serous membrane" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of stomach" EXACT []
synonym: "wall of stomach serosa" EXACT [OBOL:automatic]
synonym: "wall of stomach serous membrane" EXACT [OBOL:automatic]
synonym: "wall of ventriculus serosa" EXACT [OBOL:automatic]
synonym: "wall of ventriculus serous membrane" EXACT [OBOL:automatic]
xref: FMA:14914
xref: MA:0001626
xref: ncithesaurus:Gastric_Serosal_Surface
xref: SCTID:1353004
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004782 ! gastrointestinal system serosa
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0001167
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001167 ! wall of stomach
relationship: part_of UBERON:0001167 ! wall of stomach
[Term]
id: UBERON:0001202
name: pyloric sphincter
def: "A strong ring of smooth muscle at the end of the pyloric canal which lets food pass from the stomach to the duodenum. It receives sympathetic innervation from the celiac ganglion[WP]." [UBERON:cjm]
subset: uberon_slim
synonym: "pyloric valve" EXACT [Wikipedia:Pylorus]
xref: AAO:0011093
xref: EMAPA:19251
xref: FMA:14916
xref: MA:0002952
xref: ncithesaurus:Pyloric_Sphincter
xref: OpenCyc:Mx4rvly2ZZwpEbGdrcN5Y29ycA
xref: SCTID:268073008
xref: VHOG:0001466
xref: XAO:0000457
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0011185 ! gastrointestinal sphincter
relationship: part_of UBERON:0001166
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001166 ! pylorus
relationship: adjacent_to UBERON:0002114 ! duodenum
relationship: continuous_with UBERON:0008858 ! pyloric canal
relationship: part_of UBERON:0001166 ! pylorus
[Term]
id: UBERON:0001203
name: muscularis mucosae of stomach
comment: This class was created automatically from a combination of ontologies
synonym: "gastric muscularis mucosa" EXACT []
synonym: "lamina muscularis mucosae (tunica mucosa)(gaster)" EXACT []
synonym: "lamina muscularis of gastric mucosa" EXACT []
synonym: "muscular coat of stomach" EXACT []
synonym: "stomach muscularis mucosa" EXACT []
synonym: "tunica muscularis gastricae" EXACT [FMA:14924, FMA:TA]
xref: FMA:14924
xref: MA:0002684
xref: ncithesaurus:Gastric_Muscularis_Mucosa
xref: SCTID:64551004
is_a: UBERON:0004222 ! stomach smooth muscle
is_a: UBERON:0006676 ! muscularis mucosa
relationship: part_of UBERON:0001199
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0001199 ! mucosa of stomach
relationship: part_of UBERON:0001199 ! mucosa of stomach
[Term]
id: UBERON:0001204
name: mucosa of small intestine
def: "A mucosa that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "mucosa of organ of small bowel" EXACT [OBOL:automatic]
synonym: "mucosa of organ of small intestine" EXACT [OBOL:automatic]
synonym: "mucosa of small bowel" EXACT [OBOL:automatic]
synonym: "mucous membrane of small bowel" EXACT [OBOL:automatic]
synonym: "mucous membrane of small intestine" EXACT []
synonym: "organ mucosa of small bowel" EXACT [OBOL:automatic]
synonym: "organ mucosa of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel mucosa" EXACT [OBOL:automatic]
synonym: "small bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "small bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "small bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "small intestinal mucosa" EXACT []
synonym: "small intestine mucosa" EXACT []
synonym: "small intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "small intestine mucous membrane" EXACT []
synonym: "small intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa (intestinum tenue)" EXACT []
synonym: "tunica mucosa intestini tenuis" EXACT [FMA:14933, FMA:TA]
xref: BTO:0001259
xref: FMA:14933
xref: MA:0002686
xref: ncithesaurus:Small_Intestinal_Mucosa
xref: SCTID:362144000
is_a: UBERON:0001242 ! intestinal mucosa
relationship: part_of UBERON:0002108
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001168 ! wall of small intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001205
name: submucosa of small intestine
def: "submucosal tissue in the small intestines." [Wikipedia:Small_intestinal_submucosa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "small bowel submucosa" EXACT [OBOL:automatic]
synonym: "small intestinal submucosa" EXACT []
synonym: "small intestine submucosa" EXACT []
synonym: "submucosa of small bowel" EXACT [OBOL:automatic]
synonym: "tela submucosa (intestinum tenue)" EXACT []
synonym: "tela submucosa intestini tenuis" EXACT LATIN [BTO:0002112]
xref: BTO:0002112
xref: FMA:14934
xref: MA:0001562
xref: ncithesaurus:Small_Intestinal_Submucosa
xref: SCTID:691000
is_a: UBERON:0009566 ! intestinal submucosa
relationship: part_of UBERON:0002108
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001168 ! wall of small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001206
name: serosa of small intestine
def: "A serous membrane that is part of a small intestine [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "serosa of small bowel" EXACT [OBOL:automatic]
synonym: "serous coat of small intestine" EXACT []
synonym: "serous membrane of small bowel" EXACT [OBOL:automatic]
synonym: "serous membrane of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel serosa" EXACT [OBOL:automatic]
synonym: "small bowel serous membrane" EXACT [OBOL:automatic]
synonym: "small intestinal serosa" EXACT []
synonym: "small intestine serosa" EXACT []
synonym: "small intestine serous membrane" EXACT [OBOL:automatic]
synonym: "tunica serosa (intestinum tenue)" EXACT []
synonym: "tunica serosa intestini tenuis" EXACT [FMA:14938, FMA:TA]
synonym: "visceral peritoneum of small intestine" EXACT []
xref: FMA:14938
xref: MA:0001558
xref: SCTID:8266009
is_a: UBERON:0001243 ! serosa of intestine
relationship: part_of UBERON:0002108
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001168 ! wall of small intestine
relationship: part_of UBERON:0001243 ! serosa of intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001207
name: mucosa of large intestine
def: "A mucosa that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "large intestinal mucosa" EXACT []
synonym: "large intestine mucosa" EXACT []
synonym: "large intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "large intestine mucous membrane" EXACT [OBOL:automatic]
synonym: "large intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of large intestine" EXACT [OBOL:automatic]
synonym: "mucous membrane of large intestine" EXACT []
synonym: "organ mucosa of large intestine" EXACT [OBOL:automatic]
synonym: "tunica mucosa intestini crassi" EXACT [FMA:14969, FMA:TA]
xref: FMA:14969
xref: MA:0002688
xref: ncithesaurus:Large_Intestinal_Mucosa
is_a: UBERON:0001242 ! intestinal mucosa
relationship: part_of UBERON:0000059
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 ! wall of large intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0001208
name: submucosa of large intestine
def: "A submucosa that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "large intestinal submucosa" EXACT []
synonym: "large intestine submucosa" EXACT []
xref: BTO:0002111
xref: FMA:14970
xref: MA:0002690
xref: ncithesaurus:Large_Intestinal_Submucosa
is_a: UBERON:0009566 ! intestinal submucosa
relationship: part_of UBERON:0000059
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 ! wall of large intestine
[Term]
id: UBERON:0001209
name: serosa of large intestine
def: "A serous membrane that is part of a large intestine [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "large intestinal serosa" EXACT []
synonym: "large intestine serosa" EXACT []
synonym: "large intestine serous membrane" EXACT [OBOL:automatic]
synonym: "serous coat of large intestine" EXACT []
synonym: "serous membrane of large intestine" EXACT [OBOL:automatic]
synonym: "tunica serosa intestini crassi" EXACT [FMA:14975, FMA:TA]
synonym: "visceral peritoneum of large intestine" EXACT []
xref: FMA:14975
xref: MA:0001546
xref: ncithesaurus:Large_Intestinal_Serosal_Surface
is_a: UBERON:0001243 ! serosa of intestine
relationship: part_of UBERON:0000059
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 ! wall of large intestine
relationship: part_of UBERON:0001243 ! serosa of intestine
[Term]
id: UBERON:0001210
name: muscularis mucosae of small intestine
comment: This class was created automatically from a combination of ontologies
synonym: "lamina muscularis mucosae (tunica mucosa)(intestinum tenue)" EXACT []
synonym: "lamina muscularis of small intestine mucous membrane" EXACT []
synonym: "small intestine muscularis mucosa" EXACT []
xref: FMA:15051
xref: MA:0002687
xref: ncithesaurus:Small_Intestinal_Muscularis_Mucosa
xref: SCTID:36401004
is_a: UBERON:0001240 ! muscularis mucosae of intestine
is_a: UBERON:0004239 ! small intestine smooth muscle
relationship: part_of UBERON:0002108
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001211
name: Peyer's patch
def: "aggregations of lymphoid tissue that are usually found in the lowest portion of the small intestine ileum in humans; as such, they differentiate the ileum from the duodenum and jejunum // nodular lymphoid structures on the serosal surface of the small intestine." [Wikipedia:Peyer's_patch]
comment: AO notes: FMA has [set of?] [aggregated,small] lymphoid [follice,nodule] of [colon, SI, I, etc] - Pp is a syn for Aggregated lymphoid follicle of small intestine; but MA uses Pp as covering both SI and LI. MA also includes follicle as a part
subset: uberon_slim
synonym: "aggregated lymphoid follicle of intestine" RELATED []
synonym: "aggregated lymphoid nodule" RELATED []
synonym: "noduli lymphoidei aggregati intestini tenuis" EXACT [FMA:76466, FMA:TA]
xref: BTO:0001784
xref: EFO:0001381
xref: EMAPA:19028
xref: GAID:950
xref: MA:0000137
xref: MESH:A.10.549.598
xref: ncithesaurus:Mouse_Peyer_s_Patches
xref: ncithesaurus:Peyer_s_Patch
is_a: UBERON:0001962 ! gut-associated lymphoid tissue
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0001212
name: duodenal gland
def: "compound tubular submucosal glands found in that portion of the duodenum which is above the hepatopancreatic sphincter (Sphincter of Oddi). The main function of these glands is to produce a mucus-rich alkaline secretion (containing bicarbonate)[WP]." [Wikipedia:Brunner's_glands]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "Brunner's gland" EXACT [FMA:15060]
synonym: "gland of Brunner" EXACT [FMA:15060]
synonym: "glandula duodenales" RELATED [BTO:0002376]
synonym: "glandula duodenales Brunneri" RELATED [BTO:0002376]
xref: BTO:0002376
xref: FMA:15060
xref: GAID:314
xref: MA:0001551
xref: MESH:A.03.492.411.620.270.322
xref: ncithesaurus:Brunner_s_Gland
xref: SCTID:41298001
is_a: UBERON:0003408 ! gland of gut
is_a: UBERON:0011148 ! submucosal gland
relationship: part_of UBERON:0002330 {source="MA-inferred"} ! exocrine system
relationship: part_of UBERON:0003332 {source="FMA"} ! submucosa of duodenum
[Term]
id: UBERON:0001213
name: intestinal villus
alt_id: UBERON:0007607
def: "Tiny, finger-like projections that protrude from the epithelial lining of the intestinal wall[WP]" [Wikipedia:Intestinal_villus]
comment: Editor notes: we assume the MA class belongs here as the intestinal villi are part of the small intestine. This may need checked for ZFA. Note the BTO class refers to a generic villous
subset: uberon_slim
subset: vertebrate_core
synonym: "enteric villi" EXACT PLURAL [HP:0011473]
synonym: "enteric villous" EXACT [HP:0011473]
synonym: "enteric villus" EXACT [HP:0011473]
synonym: "intestinal villi" EXACT PLURAL [ZFA:0005125]
synonym: "small intestine villus" EXACT [MA:0001563]
synonym: "villi intestinales" EXACT PLURAL []
synonym: "villi intestinales" RELATED LATIN [Wikipedia:Intestinal_villus]
synonym: "villus" EXACT [BTO:0003121]
synonym: "villus intestinalis (intestinum tenue)" EXACT [FMA:15072]
xref: BTO:0003121
xref: FMA:15072
xref: http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Small_intestine_low_mag.jpg/200px-Small_intestine_low_mag.jpg
xref: MA:0001563
xref: ncithesaurus:Villus
xref: SCTID:23230007
xref: TAO:0005125
xref: ZFA:0005125
property_value: UBPROP:0000001 "The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine. No crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips. Crosnier et al. 2005[TAO]" xsd:string
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004923 {source="FMA"} ! organ component layer
relationship: part_of UBERON:0001204 {source="FMA"} ! mucosa of small intestine
relationship: part_of UBERON:0001242 {source="FMA"} ! intestinal mucosa
relationship: part_of UBERON:0001277 {source="ZFA"} ! intestinal epithelium
[Term]
id: UBERON:0001214
name: pancreatic tributary of splenic vein
def: "The pancreatic veins consist of several small vessels which drain the body and tail of the pancreas, and open into the trunk of the great pancreatic vein. [WP,unvetted]." [Wikipedia:Pancreatic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pancreatic vein" EXACT []
xref: FMA:15388
xref: MA:0002189
xref: ncithesaurus:Pancreatic_Vein
xref: SCTID:264492008
is_a: UBERON:0002017 ! portal vein
relationship: tributary_of UBERON:0003713 {source="FMA/obol"} ! splenic vein
[Term]
id: UBERON:0001215
name: inferior mesenteric vein
def: "In human anatomy, the inferior mesenteric vein (IMV) is a blood vessel that drains blood from the large intestine. It usually terminates when reaching the splenic vein, which goes on to form the portal vein with the superior mesenteric vein (SMV). Anatomical variations include the IMV draining into the confluence of the SMV and splenic vein and the IMV draining in the SMV. The IMV lies to the right of the similarly name artery, the inferior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [Wikipedia:Inferior_mesenteric_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lower mesenteric vein" RELATED [BTO:0002782]
synonym: "vena mesenterica inferior" RELATED LATIN [Wikipedia:Inferior_mesenteric_vein]
xref: BTO:0002782
xref: EHDAA2:0000819
xref: EHDAA:8712
xref: EMAPA:18642
xref: FMA:15391
xref: http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png
xref: MA:0002178
xref: ncithesaurus:Inferior_Mesenteric_Vein
xref: OpenCyc:Mx4rvcV53ZwpEbGdrcN5Y29ycA
xref: SCTID:281055007
xref: VHOG:0001118
is_a: UBERON:0005617 ! mesenteric vein
relationship: tributary_of UBERON:0003713 {source="FMA/obol"} ! splenic vein
[Term]
id: UBERON:0001216
name: jejunal vein
def: "The jejunal veins are tributaries of the superior mesenteric vein. [WP,unvetted]." [Wikipedia:Jejunal_veins]
comment: This class was created automatically from a combination of ontologies
synonym: "venae jejunales" RELATED LATIN [Wikipedia:Jejunal_veins]
xref: FMA:15402
xref: http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png
xref: MA:0002153
is_a: UBERON:0002017 ! portal vein
relationship: part_of UBERON:0001138 ! superior mesenteric vein
relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein
[Term]
id: UBERON:0001217
name: ileal vein
comment: This class was created automatically from a combination of ontologies
xref: FMA:15405
xref: MA:0002140
xref: ncithesaurus:Ileal_Vein
is_a: UBERON:0002017 ! portal vein
relationship: part_of UBERON:0001138 ! superior mesenteric vein
relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein
[Term]
id: UBERON:0001218
name: middle colic vein
def: "The middle colic vein drains the transverse colon. It is a tributary of the superior mesenteric vein, and follows the path of its corresponding artery, the middle colic artery. [WP,unvetted]." [Wikipedia:Middle_colic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vena colica media" RELATED LATIN [Wikipedia:Middle_colic_vein]
synonym: "vena colica media (intermedia)" EXACT []
xref: FMA:15406
xref: http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png
xref: MA:0002181
xref: OpenCyc:Mx4rvywYIpwpEbGdrcN5Y29ycA
xref: SCTID:9018004
is_a: UBERON:0002017 ! portal vein
relationship: part_of UBERON:0001138 ! superior mesenteric vein
relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein
[Term]
id: UBERON:0001219
name: ileocolic vein
def: "The ileocolic vein is a vein which drains the ileum, colon, and cecum. [WP,unvetted]." [Wikipedia:Ileocolic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vena ileocolica" RELATED LATIN [Wikipedia:Ileocolic_vein]
xref: FMA:15408
xref: http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png
xref: MA:0002141
xref: ncithesaurus:Ileocolic_Vein
xref: SCTID:36208008
is_a: UBERON:0002017 ! portal vein
relationship: part_of UBERON:0001138 ! superior mesenteric vein
relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein
[Term]
id: UBERON:0001220
name: quadratus lumborum
def: "The Quadratus lumborum is irregular and quadrilateral in shape, and broader below than above. [WP,unvetted]." [Wikipedia:Quadratus_lumborum_muscle]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "muscle of posterior abdominal wall" EXACT []
xref: EMAPA:18524
xref: FMA:15569
xref: http://upload.wikimedia.org/wikipedia/commons/d/de/Gray1124.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/de/Gray1124.png/200px-Gray1124.png
xref: MA:0002362
xref: ncithesaurus:Quadratus_Lumborum
xref: OpenCyc:Mx4rvj1wcpwpEbGdrcN5Y29ycA
is_a: UBERON:0002378 ! muscle of abdomen
is_a: UBERON:0004518 ! muscle of vertebral column
relationship: has_muscle_insertion UBERON:0001077 {notes="Last rib and transverse processes of lumbar vertebrae", source="dbpedia"} ! transverse process of vertebra
relationship: has_muscle_insertion UBERON:0002228 {notes="Last rib and transverse processes of lumbar vertebrae", source="dbpedia"} ! rib
relationship: has_muscle_insertion UBERON:0002414 {notes="Last rib and transverse processes of lumbar vertebrae", source="dbpedia"} ! lumbar vertebra
[Term]
id: UBERON:0001221
name: transversus abdominis muscle
def: "The transversus abdominis muscle, also known as the transversalis muscle and transverse abdominal muscle, is a muscle layer of the anterior and lateral abdominal wall which is just deep to (layered below) the internal oblique muscle. It is thought to be a major muscle of the functional core of the human body; although some argue that due to its small cross-sectional area, it cannot generate the forces required to be a prime core stabilizer. [WP,unvetted]." [Wikipedia:Transversus_abdominis_muscle]
subset: organ_slim
subset: uberon_slim
synonym: "musculus transversus abdominis" EXACT [FMA:15570, FMA:TA]
synonym: "musculus transversus abdominis" EXACT [FMA:TA]
synonym: "transversalis" RELATED [Wikipedia:Transversus_abdominis_muscle]
synonym: "transversalis muscle" RELATED [Wikipedia:Transversus_abdominis_muscle]
synonym: "transverse abdominal" EXACT [FMA:15570]
synonym: "transverse abdominal" EXACT []
synonym: "transverse abdominal" RELATED [Wikipedia:Transversus_abdominis_muscle]
synonym: "transverse abdominal muscle" RELATED [Wikipedia:Transversus_abdominis_muscle]
synonym: "transverse abdominis" RELATED [Wikipedia:Transversus_abdominis_muscle]
synonym: "transverse abdominus" RELATED [Wikipedia:Transversus_abdominis_muscle]
synonym: "transversis abdominus" EXACT LATIN [Wikipedia:Transversus_abdominis_muscle]
synonym: "transversus" RELATED [Wikipedia:Transversus_abdominis_muscle]
synonym: "transversus abdominis" EXACT LATIN []
synonym: "transversus abdominis" RELATED [Wikipedia:Transversus_abdominis_muscle]
synonym: "transversus abdominus" RELATED [Wikipedia:Transversus_abdominis_muscle]
synonym: "transversus abdominus muscle" RELATED [Wikipedia:Transversus_abdominis_muscle]
xref: EHDAA2:0002078
xref: EHDAA:8254
xref: EMAPA:18165
xref: FMA:15570
xref: http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_trunk_muscles.jpg/200px-Illu_trunk_muscles.jpg
xref: MA:0002396
xref: ncithesaurus:Transversus_Abdominis
xref: SCTID:244933000
xref: VHOG:0000845
is_a: UBERON:0002461 ! anterior abdominal wall muscle
relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme
relationship: part_of UBERON:0006635 {source="VHOG"} ! anterior abdominal wall
[Term]
id: UBERON:0001222
name: right ureter
def: "A ureter that is part of a right side of organism [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
xref: FMA:15571
xref: MA:0001685
xref: ncithesaurus:Right_Ureter
xref: SCTID:276251000
is_a: UBERON:0000056 ! ureter
relationship: in_right_side_of UBERON:0000468
intersection_of: UBERON:0000056 ! ureter
intersection_of: in_right_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_right_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0001223
name: left ureter
def: "A ureter that is part of a left side of organism [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
xref: FMA:15572
xref: MA:0001684
xref: ncithesaurus:Left_Ureter
xref: SCTID:276340002
is_a: UBERON:0000056 ! ureter
relationship: in_left_side_of UBERON:0000468
intersection_of: UBERON:0000056 ! ureter
intersection_of: in_left_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0001224
name: renal pelvis
def: "funnel-like dilated proximal part of the ureter in the kidney." [Wikipedia:Renal_pelvis]
comment: In this ontology, the renal pelvis is represented as the area of part-overlap between the kidney and the ureter
subset: uberon_slim
synonym: "kidney pelvis" EXACT []
synonym: "p. renallis" RELATED LATIN [Wikipedia:Renal_pelvis]
synonym: "pelvis of ureter" EXACT []
xref: EMAPA:17948
xref: FMA:15575
xref: GAID:426
xref: galen:RenalPelvis
xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Illu_kidney2.jpg/200px-Illu_kidney2.jpg
xref: MA:0000374
xref: MESH:A.05.810.453.537
xref: ncithesaurus:Renal_Pelvis
xref: SCTID:362221007
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
disjoint_from: UBERON:0002355 ! pelvis
relationship: channel_for UBERON:0001088 ! urine
relationship: channels_from UBERON:0002113 ! kidney
relationship: channels_into UBERON:0000056 ! ureter
relationship: part_of UBERON:0000056 {source="FMA"} ! ureter
relationship: part_of UBERON:0002113 {source="MA"} ! kidney
[Term]
id: UBERON:0001225
name: cortex of kidney
def: "Region of parenchyma of kidney representing the outer portion.[FMA]" [FMA:FMA, Wikipedia:Renal_cortex]
subset: uberon_slim
synonym: "cortex renalis" EXACT [FMA:15581, FMA:TA]
synonym: "kidney cortex" EXACT []
synonym: "renal cortex" EXACT []
xref: BTO:0001166
xref: EHDAA:9332
xref: EMAPA:17952
xref: FMA:15581
xref: GAID:424
xref: galen:CortexOfKidney
xref: http://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg
xref: MA:0000372
xref: MESH:A.05.810.453.324
xref: ncithesaurus:Renal_Cortex
xref: SCTID:362211004
is_a: UBERON:0001851 ! cortex
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002113
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0008987 {source="FMA"} ! renal parenchyma
[Term]
id: UBERON:0001226
name: major calyx
def: "The major calyx, in the kidney, surrounds the apex of the malpighian pyramids. Urine formed in the kidney passes through a papilla at the apex into a minor calyx then into major calyx before passing through the renal pelvis into the ureter. Peristalsis of the smooth muscle originating in pace-maker cells originating in the walls of the calyces propels urine through the pelvis and ureters to the bladder. [WP,unvetted]." [Wikipedia:Major_calyx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "calices renales majores" RELATED LATIN [Wikipedia:Major_calyx]
synonym: "major calix" EXACT []
xref: EMAPA:18677
xref: FMA:15613
xref: http://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png
xref: MA:0001644
xref: SCTID:1106008
is_a: UBERON:0006517 ! kidney calyx
[Term]
id: UBERON:0001227
name: minor calyx
def: "The minor calyx, in the kidney, surrounds the apex of the malpighian pyramids. Urine formed in the kidney passes through a papilla at the apex into the minor calyx then into the major calyx. Peristalsis of the smooth muscle originating in pace-maker cells originating in the walls of the calyces propels urine through the pelvis and ureters to the bladder. [WP,unvetted]." [Wikipedia:Minor_calyx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "calices renales minores" RELATED LATIN [Wikipedia:Minor_calyx]
synonym: "minor calix" EXACT []
xref: EMAPA:18678
xref: FMA:15614
xref: http://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png
xref: MA:0001645
xref: SCTID:26293004
is_a: UBERON:0006517 ! kidney calyx
[Term]
id: UBERON:0001228
name: renal papilla
def: "In the kidney, the renal papilla is the location where the Medullary pyramids empty urine into the renal pelvis. Histologically it is marked by medullary collecting ducts converging to channel the fluid. Transitional epithelium begins to be seen. [WP,unvetted]." [Wikipedia:Renal_papilla]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "kidney papilla" EXACT [MP:0011303]
xref: BTO:0003925
xref: FMA:15622
xref: galen:RenalPapilla
xref: http://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png
xref: MA:0002730
xref: MESH:A.05.810.453.466
xref: ncithesaurus:Renal_Papilla
xref: SCTID:362214007
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001224 ! renal pelvis
relationship: part_of UBERON:0001294 ! inner medulla of kidney
[Term]
id: UBERON:0001229
name: renal corpuscle
def: "In the kidney, a renal corpuscle is the initial blood-filtering component of a nephron. It consists of two structures: a glomerulus and a Bowman's capsule. The glomerulus is a small tuft of capillaries containing two cell types. Endothelial cells, which have large fenestrae, are not covered by diaphragms. Mesangial cells are modified smooth muscle cells that lie between the capillaries and the glomerulus. They regulate blood flow by their contractile activity and secrete extracellular matrix, prostaglandins, and cytokines. Mesangial cells also have phagocytic activity, removing proteins and other molecules trapped in the glomerular basement membrane or filtration barrier. The Bowman's capsule has an outer parietal layer composed of simple squamous epithelium. The visceral layer, composed of modified simple squamous epithelium, is lined by podocytes. Podocytes have foot processes, pedicels, that wrap around glomerular capillaries. These pedicels interdigitate with pedicels of adjacent podocytes forming filtration slits. The renal corpuscle filtration barrier is composed of: the fenestrated endothelium of glomerular capillaries, the fused basal lamina of endothelial cells and podocytes, and the filtration slits of the podocytes. This barrier permits passage of water, ions, and small molecules from the bloodstream into Bowman's space (the space between the visceral and parietal layers). Large and/or negatively charged proteins are prevented from passing into Bowman's space, thus retaining these proteins in the circulation. The basal lamina is composed of 3 layers: lamina rara externa, lamina densa, and lamina rara interna. The lamina rara externa is adjacent to the podocyte processes. The lamina densa is the central layer consisting of type IV collagen and laminin. This layer acts as a selective macromolecular filter, preventing the passage of large protein molecules into Bowman's space. The lamina rara intena is adjacent to endothelial cells. This layer contains heparan sulfate, a negatively charged glycosaminoglycan that contributes to the electrostatic barrier of the glomerular filter. There are two poles in the renal corpuscle, a vascular pole, and a urinary pole. The vascular pole is where the afferent and efferent arterioles communicate with the glomerulus. The urinary pole is where the corpuscle opens into the lumen of the proximal convoluted tubule. Fluid from blood in the glomerulus is collected in the Bowman's capsule to form 'glomerular filtrate', which is then further processed along the nephron to form urine. [WP,unvetted]." [Wikipedia:Renal_corpuscle]
comment: Together, the Bowmans capsule and the glomerulus comprise the definitive renal corpuscle. http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron
subset: uberon_slim
subset: vertebrate_core
synonym: "corpusculum renale" EXACT []
synonym: "corpusculum renis" RELATED LATIN [Wikipedia:Renal_corpuscle]
synonym: "cortical renal corpuscle" RELATED []
synonym: "malphighian corpuscle" RELATED []
synonym: "malphigian corpuscle" EXACT []
synonym: "Malpighian corpuscle" EXACT [ZFA:0005281]
xref: BTO:0000333
xref: EMAPA:28236
xref: EV:0100385
xref: FMA:15625
xref: http://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Renal_corpuscle.svg/200px-Renal_corpuscle.svg.png
xref: MA:0000376
xref: ncithesaurus:Renal_Corpuscle
xref: SCTID:361329009
xref: TAO:0005281
xref: VHOG:0001262
xref: ZFA:0005281
property_value: UBPROP:0000001 "The part of the nephron that filters blood.[TAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0001230
name: glomerular capsule
def: "The Bowman's capsule is a cup-like sac at the beginning of the tubular component of a nephron in the mammalian kidney. A glomerulus is enclosed in the sac. Fluids from blood in the glomerulus are collected in the Bowman's capsule and further processed along the nephron to form urine. This process is known as ultrafiltration. [WP,unvetted]." [Wikipedia:Bowman%27s_capsule]
comment: One fold of the S-shaped body gives rise to Bowman’s capsule[GUDMAP]
subset: uberon_slim
subset: vertebrate_core
synonym: "Bowman's capsule" EXACT [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron]
synonym: "Bowmans capsule" EXACT [KUPO:0001001]
xref: AAO:0010526
xref: BTO:0002297
xref: EMAPA:27973
xref: EMAPA:28257
xref: FMA:15626
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png
xref: KUPO:0001001
xref: MA:0001660
xref: ncithesaurus:Bowman_s_Capsule
xref: SCTID:361331000
xref: TAO:0005254
xref: TAO:0005310
xref: ZFA:0005254
xref: ZFA:0005310
property_value: UBPROP:0000001 "Anatomical structure found in the kidney consisting of an expanded end of a kidney tubule surrounding a glomerulus and is the major site of filtration.[AAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0006554 ! urinary system structure
disjoint_from: UBERON:0002015 ! kidney capsule
relationship: develops_from UBERON:0004199 ! S-shaped body
relationship: part_of UBERON:0001229 ! renal corpuscle
[Term]
id: UBERON:0001231
name: nephron tubule
alt_id: UBERON:0004210
def: "An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, Wikipedia:Renal_tubule]
comment: note that in ISBN10:0073040584 "Vertebrates, Kardong", the uriniferous tubule contains the nephron, so we have a separate class, rather than using a synonym, as in MA
subset: uberon_slim
subset: vertebrate_core
synonym: "kidney tubule" EXACT [GAID:433]
synonym: "renal tubule" BROAD []
synonym: "tubulus renalis" EXACT []
synonym: "uriniferous tubule" RELATED [MA:0000377]
xref: BTO:0000343
xref: EFO:0003666
xref: EMAPA:27782
xref: EV:0100387
xref: FMA:15627
xref: GAID:433
xref: MA:0000377
xref: MESH:A.05.810.453.736.560
xref: ncithesaurus:Renal_Tubule
xref: SCTID:361332007
xref: TAO:0001287
xref: ZFA:0001287
is_a: UBERON:0004211 ! nephron epithelium
is_a: UBERON:0009773 {source="GO"} ! renal tubule
relationship: part_of UBERON:0001285
intersection_of: UBERON:0003914 ! epithelial tube
intersection_of: part_of UBERON:0001285 ! nephron
relationship: develops_from UBERON:0003918 {notes="checkme"} ! kidney mesenchyme
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0001232
name: collecting duct of renal tubule
def: "The collecting duct is a portion of the nephron through which water flows, moving passively down its concentration gradient" [GO:0072044]
comment: note that in ISBN10:0073040584 "Vertebrates, Kardong", the nephron is adjacent to the collecting tubule, consistent with FMA, but not GO
subset: uberon_slim
subset: vertebrate_core
synonym: "collecting duct" EXACT [GO:0072044]
synonym: "collecting duct system" RELATED [BTO:0000761]
synonym: "collecting tubule" RELATED []
synonym: "kidney collecting duct" EXACT []
synonym: "renal collecting tubule" EXACT [FMA:15628]
synonym: "tubulus renalis colligens" EXACT []
xref: BTO:0000761
xref: EMAPA:28407
xref: EV:0100391
xref: FMA:15628
xref: GAID:434
xref: MA:0000371
xref: MESH:A.05.810.453.736.560.510
xref: SCTID:28202009
xref: TAO:0005294
xref: ZFA:0005294
property_value: UBPROP:0000001 "Renal duct that collects the output from renal tubules.[TAO]" xsd:string
is_a: UBERON:0006553 ! renal duct
relationship: part_of UBERON:0001285 {source="GO", notes="checkme"} ! nephron
relationship: part_of UBERON:0007684 {source="FMA"} ! uriniferous tubule
[Term]
id: UBERON:0001233
name: right adrenal gland
comment: This class was created automatically from a combination of ontologies
synonym: "right suprarenal gland" EXACT []
xref: FMA:15629
xref: MA:0000719
xref: ncithesaurus:Right_Adrenal_Gland
xref: SCTID:281625001
is_a: UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0001234
name: left adrenal gland
comment: This class was created automatically from a combination of ontologies
synonym: "left suprarenal gland" EXACT []
xref: FMA:15630
xref: MA:0000718
xref: ncithesaurus:Left_Adrenal_Gland
xref: SCTID:281626000
is_a: UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0001235
name: adrenal cortex
def: "Situated along the perimeter of the adrenal gland, the adrenal cortex mediates the stress response through the production of mineralocorticoids and glucocorticoids, including aldosterone and cortisol respectively. It is also a secondary site of androgen synthesis. [WP,unvetted]." [Wikipedia:Adrenal_cortex]
comment: Taxon notes: Kardong states that mammals are the first to have distinct cortext and medulla, but this contradicts XAO
subset: uberon_slim
synonym: "adrenal gland cortex" EXACT []
synonym: "cortex (glandula suprarenalis)" EXACT []
synonym: "cortex glandulae suprarenalis" RELATED LATIN [Wikipedia:Adrenal_cortex]
synonym: "cortex glandulae suprarenalis" RELATED [BTO:0000045]
synonym: "cortex of adrenal gland" EXACT []
synonym: "cortex of suprarenal gland" EXACT []
synonym: "suprarenal" RELATED []
synonym: "suprarenal cortex" EXACT []
xref: AAO:0011009
xref: BTO:0000045
xref: EFO:0000237
xref: EMAPA:18427
xref: EV:0100136
xref: FMA:15632
xref: GAID:447
xref: http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png
xref: MA:0000118
xref: MAT:0000494
xref: MESH:A.06.407.071.140
xref: ncithesaurus:Adrenal_Cortex
xref: SCTID:362584002
xref: VHOG:0001481
xref: XAO:0000165
is_a: UBERON:0001851 ! cortex
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002369
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0002369 ! adrenal gland
relationship: develops_from UBERON:0000926 {source="Wikipedia"} ! mesoderm
relationship: part_of UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0001236
name: adrenal medulla
def: "The adrenal medulla is part of the adrenal gland. It is located at the center of the gland, being surrounded by the adrenal cortex. It is the innermost part of the adrenal gland, consisting of cells that secrete epinephrine, norepinephrine, and a small amount of dopamine in response to stimulation by sympathetic preganglionic neurons. Composed mainly of hormone-producing chromaffin cells, the adrenal medulla is the principal site of the conversion of the amino acid tyrosine into the catecholamines adrenaline (epinephrine), noradrenaline (norepinephrine), and dopamine[WP,unvetted]." [Wikipedia:Adrenal_medulla]
subset: uberon_slim
synonym: "adrenal gland medulla" EXACT []
synonym: "chromaffin cells" RELATED []
synonym: "medulla (glandula suprarenalis)" EXACT []
synonym: "medulla glandulae suprarenalis" EXACT [FMA:15633, FMA:TA]
synonym: "medulla of adrenal gland" EXACT [OBOL:automatic]
synonym: "medulla of glandula suprarenalis" RELATED [BTO:0000049]
synonym: "medulla of suprarenal gland" EXACT []
synonym: "suprarenal medulla" EXACT []
xref: AAO:0011010
xref: BTO:0000049
xref: EFO:0000852
xref: EMAPA:18428
xref: EV:0100137
xref: FMA:15633
xref: GAID:451
xref: http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png
xref: MA:0000119
xref: MAT:0000495
xref: MESH:A.06.224.161
xref: ncithesaurus:Adrenal_Medulla
xref: SCTID:362585001
xref: VHOG:0001378
xref: XAO:0000166
is_a: UBERON:0000958 ! medulla
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002369
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0002369 ! adrenal gland
relationship: develops_from UBERON:0002342 {source="Kardong", source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0002369 ! adrenal gland
relationship: surrounded_by UBERON:0001235 ! adrenal cortex
[Term]
id: UBERON:0001237
name: paraaortic body
def: "." [Wikipedia:Organ_of_Zuckerkandl]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "organ of zuckerkandl" EXACT []
synonym: "para-aortic body" RELATED []
synonym: "paraganglia of zuckerkandl" RELATED []
synonym: "paraganglion of Zuckerkandl" EXACT [EMAPA:18223]
xref: EMAPA:18223
xref: FMA:15647
xref: GAID:444
xref: http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png
xref: MA:0001137
xref: MESH:A.06.224.636
xref: ncithesaurus:Paraaortic
xref: SCTID:276159005
is_a: UBERON:0000062 {source="FMA"} ! organ
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001238
name: lamina propria of small intestine
def: "Lamina propria that is part_of the small intestine." [GOC:Obol]
synonym: "lamina propria mucosa of small bowel" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of small intestine" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of small bowel" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of small intestine" EXACT []
synonym: "lamina propria of mucosa of small intestine" EXACT []
synonym: "lamina propria of small bowel" EXACT [OBOL:automatic]
synonym: "small bowel lamina propria" EXACT [OBOL:automatic]
synonym: "small bowel lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "small bowel lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "small intestine lamina propria" EXACT []
synonym: "small intestine lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "small intestine lamina propria mucosae" EXACT [OBOL:automatic]
xref: FMA:15651
xref: MA:0001554
xref: ncithesaurus:Small_Intestinal_Lamina_Propria
xref: SCTID:63588008
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004780 ! gastrointestinal system lamina propria
relationship: part_of UBERON:0002108
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001239
name: muscularis mucosae of large intestine
comment: This class was created automatically from a combination of ontologies
synonym: "lamina muscularis of large intestine mucosa" EXACT []
synonym: "lamina muscularis of large intestine mucous membrane" EXACT []
synonym: "large intestine muscularis mucosa" EXACT []
xref: FMA:15655
xref: MA:0002689
xref: ncithesaurus:Large_Intestinal_Muscularis_Mucosa
is_a: UBERON:0001240 ! muscularis mucosae of intestine
is_a: UBERON:0004220 ! large intestine smooth muscle
relationship: part_of UBERON:0000059
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001207 ! mucosa of large intestine
relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine
[Term]
id: UBERON:0001240
name: muscularis mucosae of intestine
comment: This class was created automatically from a combination of ontologies
synonym: "intestine muscularis mucosa" EXACT []
xref: FMA:15691
xref: MA:0002694
is_a: UBERON:0004221 ! intestine smooth muscle
is_a: UBERON:0006676 ! muscularis mucosa
relationship: part_of UBERON:0000160
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0001241
name: crypt of Lieberkuhn of small intestine
def: "A crypt of lieberkuhn that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "crypt of lieberkuhn of small bowel" EXACT [OBOL:automatic]
synonym: "crypt of lieberkuhn of small intestine" EXACT [OBOL:automatic]
synonym: "intestinal gland of small bowel" EXACT [OBOL:automatic]
synonym: "intestinal gland of small intestine" EXACT [OBOL:automatic]
synonym: "lieberkuhn crypt of small bowel" EXACT [OBOL:automatic]
synonym: "lieberkuhn crypt of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel crypt of lieberkuhn" EXACT [OBOL:automatic]
synonym: "small bowel intestinal gland" EXACT [OBOL:automatic]
synonym: "small bowel lieberkuhn crypt" EXACT [OBOL:automatic]
synonym: "small intestinal crypt of Lieberkuhn" EXACT []
synonym: "small intestine crypt of Lieberkuhn" EXACT []
synonym: "small intestine crypt of lieberkuhn" EXACT [OBOL:automatic]
synonym: "small intestine intestinal gland" EXACT [OBOL:automatic]
synonym: "small intestine lieberkuhn crypt" EXACT [OBOL:automatic]
xref: FMA:15693
xref: MA:0001552
xref: ncithesaurus:Small_Intestinal_Crypt_of_Lieberkuhn
is_a: UBERON:0001983 ! crypt of lieberkuhn
relationship: part_of UBERON:0002108
intersection_of: UBERON:0001983 ! crypt of lieberkuhn
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001242
name: intestinal mucosa
def: "The innermost membrane of the four coats of the intestinal wall, the other three being the submucosa, muscular layers, and serosa. (Berk et al., Gastroenterology, 4th ed, v.3, p1479)" [MESH:A.03.492.411.369]
subset: uberon_slim
synonym: "bowel mucosa" EXACT [OBOL:automatic]
synonym: "bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "intestine mucosa" EXACT []
synonym: "intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "intestine mucous membrane" EXACT [OBOL:automatic]
synonym: "intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bowel" EXACT [OBOL:automatic]
synonym: "mucosa of intestine" EXACT []
synonym: "mucosa of organ of bowel" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intestine" EXACT [OBOL:automatic]
synonym: "mucous membrane of bowel" EXACT [OBOL:automatic]
synonym: "mucous membrane of intestine" EXACT [OBOL:automatic]
synonym: "organ mucosa of bowel" EXACT [OBOL:automatic]
synonym: "organ mucosa of intestine" EXACT [OBOL:automatic]
xref: BTO:0000642
xref: FMA:15695
xref: GAID:296
xref: MA:0001537
xref: MESH:A.03.492.411.369
xref: ncithesaurus:Intestinal_Mucosa
xref: SCTID:362080002
is_a: UBERON:0004786 ! gastrointestinal system mucosa
relationship: part_of UBERON:0000160
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001262 ! wall of intestine
[Term]
id: UBERON:0001243
name: serosa of intestine
def: "A serous membrane that is part of a wall of intestine [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "anatomical wall of bowel serosa" EXACT [OBOL:automatic]
synonym: "anatomical wall of bowel serous membrane" EXACT [OBOL:automatic]
synonym: "anatomical wall of intestine serosa" EXACT [OBOL:automatic]
synonym: "anatomical wall of intestine serous membrane" EXACT [OBOL:automatic]
synonym: "bowel anatomical wall serosa" EXACT [OBOL:automatic]
synonym: "bowel anatomical wall serous membrane" EXACT [OBOL:automatic]
synonym: "bowel wall serosa" EXACT [OBOL:automatic]
synonym: "bowel wall serous membrane" EXACT [OBOL:automatic]
synonym: "intestinal serosa" EXACT []
synonym: "intestinal wall serosa" EXACT [OBOL:automatic]
synonym: "intestinal wall serous membrane" EXACT [OBOL:automatic]
synonym: "intestine anatomical wall serosa" EXACT [OBOL:automatic]
synonym: "intestine anatomical wall serous membrane" EXACT [OBOL:automatic]
synonym: "intestine serosa" EXACT []
synonym: "intestine wall serosa" EXACT [OBOL:automatic]
synonym: "intestine wall serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of anatomical wall of bowel" EXACT [OBOL:automatic]
synonym: "serosa of anatomical wall of intestine" EXACT [OBOL:automatic]
synonym: "serosa of bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "serosa of bowel wall" EXACT [OBOL:automatic]
synonym: "serosa of intestinal wall" EXACT [OBOL:automatic]
synonym: "serosa of intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "serosa of intestine wall" EXACT [OBOL:automatic]
synonym: "serosa of wall of bowel" EXACT [OBOL:automatic]
synonym: "serosa of wall of intestine" EXACT [OBOL:automatic]
synonym: "serous membrane of anatomical wall of bowel" EXACT [OBOL:automatic]
synonym: "serous membrane of anatomical wall of intestine" EXACT [OBOL:automatic]
synonym: "serous membrane of bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "serous membrane of bowel wall" EXACT [OBOL:automatic]
synonym: "serous membrane of intestinal wall" EXACT [OBOL:automatic]
synonym: "serous membrane of intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "serous membrane of intestine wall" EXACT [OBOL:automatic]
synonym: "serous membrane of wall of bowel" EXACT [OBOL:automatic]
synonym: "serous membrane of wall of intestine" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of intestine" EXACT []
synonym: "wall of bowel serosa" EXACT [OBOL:automatic]
synonym: "wall of bowel serous membrane" EXACT [OBOL:automatic]
synonym: "wall of intestine serosa" EXACT [OBOL:automatic]
synonym: "wall of intestine serous membrane" EXACT [OBOL:automatic]
xref: FMA:15701
xref: MA:0001538
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004782 ! gastrointestinal system serosa
relationship: part_of UBERON:0001262
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001262 ! wall of intestine
relationship: part_of UBERON:0001262 ! wall of intestine
[Term]
id: UBERON:0001244
name: internal anal sphincter
def: "The Sphincter ani internus (or internal anal sphincter) is a muscular ring which surrounds about 2.5 cm of the anal canal; its inferior border is in contact with, but quite separate from, the Sphincter ani externus. It is about 5 mm thick, and is formed by an aggregation of the involuntary circular fibers of the intestine. Its lower border is about 6 mm from the orifice of the anus. [WP,unvetted]." [Wikipedia:Internal_anal_sphincter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "circular layer of anal muscularis externa" EXACT []
synonym: "circular layer of muscularis externa of anal canal" EXACT []
synonym: "circular layer of muscularis propria of anal canal" EXACT []
synonym: "circular muscle layer of anal canal" EXACT []
xref: EMAPA:18266
xref: FMA:15710
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray1079.png/200px-Gray1079.png
xref: MA:0001534
xref: ncithesaurus:Internal_Anal_Sphincter
is_a: UBERON:0004231 {source="MA"} ! anal region smooth muscle
is_a: UBERON:0004916 ! anal sphincter
is_a: UBERON:0007521 ! smooth muscle sphincter
relationship: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0001245
name: anus
def: "Orifice at the opposite end of an animal's digestive tract from the mouth. Its function is to expel feces, unwanted semi-solid matter produced during digestion, which, depending on the type of animal, may be one or more of: matter which the animal cannot digest, such as bones; food material after all the nutrients have been extracted, for example cellulose or lignin; ingested matter which would be toxic if it remained in the digestive tract; and dead or excess gut bacteria and other endosymbionts." [Wikipedia:Anus, ZFIN:curator]
comment: Taxon notes: In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html
subset: uberon_slim
synonym: "anal orifice" EXACT []
synonym: "proctodeum" RELATED []
xref: BTO:0001680
xref: EV:0100082
xref: FBbt:00001893
xref: FBbt:00003148
xref: FMA:15711
xref: GAID:312
xref: galen:Anus
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Protovsdeuterostomes.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif
xref: MA:0000331
xref: MESH:A.03.492.411.495.767.288
xref: ncithesaurus:Anus
xref: OpenCyc:Mx4rvVjaEZwpEbGdrcN5Y29ycA
xref: SCTID:181262009
xref: TADS:0000066
xref: TGMA:0001279
xref: WBbt:0005364
is_a: UBERON:0000161 ! orifice
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000931 ! proctodeum
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0001246
name: interlobular bile duct
def: "the canals that carry bile in the liver between the intralobular ducts and the biliary ductules; interlobular bile ducts are part of the interlobular portal triad." [MP:0009500]
comment: This class was created automatically from a combination of ontologies
xref: FMA:15767
xref: MA:0002668
xref: ncithesaurus:Interlobular_Bile_Duct
xref: SCTID:83488001
is_a: UBERON:0003704 {source="FMA"} ! intrahepatic bile duct
relationship: part_of UBERON:0001279 {source="FMA"} ! portal triad
[Term]
id: UBERON:0001247
name: falciform ligament
def: "a ligament that attaches the liver to the anterior body wall. It is a broad and thin antero-posterior peritoneal fold, falciform in shape, its base being directed downward and backward and its apex upward and backward. It is a remnant of the ventral mesentery of the fetus. It is situated in an antero-posterior plane but lies obliquely, so that one surface faces forward and is in contact with the peritoneum behind the right rectus and the diaphragm, while the other is directed backward and is in contact with the left lobe of the liver. It is attached by its left margin to the under surface of the diaphragm and the posterior surface of the sheath of the right Rectus as low down as the umbilicus; by its right margin it extends from the notch on the anterior margin of the liver, as far back as the posterior surface. It is composed of two layers of peritoneum closely united together. Its base or free edge contains between its layers the round ligament and the paraumbilical veins[WP]." [Wikipedia:Falciform_ligament]
comment: In FMA this is a subclass of mesentery. In MA it is a subclass of ligament, we infer and assert this is a nonskeletal ligament
subset: uberon_slim
synonym: "falciform ligament of liver" EXACT []
synonym: "ligamentum falciforme (hepatis)" EXACT []
synonym: "ligamentum falciforme hepatis" EXACT [FMA:15823, FMA:TA]
xref: EHDAA2:0000499
xref: EHDAA:4856
xref: EMAPA:18288
xref: EMAPA:18908
xref: FMA:15823
xref: MA:0001622
xref: ncithesaurus:Falciform_Ligament
xref: SCTID:362705001
xref: VHOG:0000355
is_a: UBERON:0003281 ! mesentery of stomach
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0008845 {source="MA-propagated"} ! nonskeletal ligament
relationship: attaches_to UBERON:0000309
relationship: attaches_to UBERON:0002107
intersection_of: UBERON:0008845 ! nonskeletal ligament
intersection_of: attaches_to UBERON:0000309 ! body wall
intersection_of: attaches_to UBERON:0002107 ! liver
relationship: attaches_to UBERON:0000309 ! body wall
relationship: attaches_to UBERON:0002107 ! liver
relationship: part_of UBERON:0005626 {source="MA"} ! ventral mesogastrium
[Term]
id: UBERON:0001248
name: hilum of spleen
def: "The splenic hilum is a location on the surface of the spleen. It is the point of attachment for the gastrosplenic ligament, and the point of insertion for the splenic artery and splenic vein. [WP,unvetted]." [Wikipedia:Splenic_hilum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hilum lienale" EXACT [FMA:15841, FMA:TA]
synonym: "hilum splenicum" EXACT [FMA:15841, FMA:TA]
synonym: "hilum splenicum" RELATED LATIN [Wikipedia:Splenic_hilum]
synonym: "spleen hilum" EXACT []
synonym: "splenic hilum" EXACT []
xref: EMAPA:19303
xref: FMA:15841
xref: http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Gray1188.png/200px-Gray1188.png
xref: MA:0002670
xref: ncithesaurus:Splenic_Hilum
xref: SCTID:245377005
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004885 ! hilum
relationship: part_of UBERON:0002106
intersection_of: UBERON:0004885 ! hilum
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0001249
name: spleen lymphoid follicle
alt_id: UBERON:0003969
def: "the area of the white pulp where the affinity maturation of B cells and the generation of memory B cells and plasma cells occur" [CL:tm, https://github.com/cmungall/uberon/issues/6, MP:0008470]
synonym: "lymphatic follicle of spleen" EXACT [FMA:15843]
synonym: "lymphoid follicle of spleen" EXACT [FMA:15843]
synonym: "lymphoid nodule of spleen" EXACT [FMA:15843]
synonym: "Malpighian body" EXACT [FMA:15843]
synonym: "spleen B cell follicle" EXACT [CL:tm]
synonym: "spleen lymphoid follicle" EXACT [MA:0002672]
synonym: "spleen lymphoid nodule" RELATED [MA:0002672]
synonym: "splenic B cell follicle" EXACT [CL:tm]
synonym: "splenic lymphatic follicle" EXACT [FMA:15843]
synonym: "splenic lymphoid follicle" EXACT []
xref: MA:0002672
xref: ncithesaurus:Splenic_Lymphoid_Follicle
xref: SCTID:35845000
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000444 ! lymphoid follicle
relationship: part_of UBERON:0002106
intersection_of: UBERON:0000444 ! lymphoid follicle
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0001959 {source="CL:tm", source="MA"} ! white pulp of spleen
relationship: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0006561 {source="FMA"} ! non-lymphatic part of lymphoid system
relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen
[Term]
id: UBERON:0001250
name: red pulp of spleen
def: "Red pulp of the spleen is composed of connective tissue known as the cords of Billroth and many splenic sinuses that are engorged with blood, giving it a red color. Its primary function is to filter the blood of antigens, microorganisms, and defective or worn-out red blood cells. The spleen is made of red pulp and white pulp, separated by the marginal zone; 76-79% of a normal spleen is red pulp. Unlike white pulp, which mainly contains lymphocytes such as T cells, red pulp is made up of several different types of blood cells, including platelets, granulocytes, red blood cells, and plasma." [Wikipedia:Red_pulp]
subset: uberon_slim
synonym: "pulpa rubra" EXACT [FMA:15844, FMA:TA]
synonym: "pulpa splenica" RELATED LATIN [Wikipedia:Red_pulp]
synonym: "red pulp" EXACT []
synonym: "spleen red pulp" EXACT []
synonym: "splenic red pulp" EXACT []
xref: FMA:15844
xref: http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png
xref: MA:0000756
xref: ncithesaurus:Splenic_Red_Pulp
xref: SCTID:27579002
is_a: UBERON:1000023 ! spleen pulp
[Term]
id: UBERON:0001251
name: marginal zone of spleen
def: "region at the interface between the non-lymphoid red pulp and the lymphoid white-pulp of the spleen." [Wikipedia:Marginal_zone]
comment: WP says - (Some sources consider it to be the part of red pulp which borders on the white pulp, while other sources consider it to be neither red pulp nor white pulp.) - we use the adjacency relation here so it overlaps neither. FMA considers this an anatomical line. Not to be confused with: Marginal zone of spleen (e.g. AAO:0010448 marginal zone)
synonym: "junctional zone of spleen" EXACT []
synonym: "marginal zone" BROAD [Wikipedia:Marginal_zone]
synonym: "spleen marginal zone" EXACT []
xref: FMA:15852
xref: http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png
xref: MA:0000755
xref: ncithesaurus:Marginal_Zone
is_a: UBERON:0000466 ! immaterial anatomical entity
disjoint_from: UBERON:0004879 ! marginal zone of embryo
relationship: adjacent_to UBERON:0001250 ! red pulp of spleen
relationship: adjacent_to UBERON:0001959 ! white pulp of spleen
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0001252
name: adventitia of ureter
comment: This class was created automatically from a combination of ontologies
synonym: "external adventitia of ureter" EXACT []
synonym: "ureter adventitia" EXACT []
synonym: "ureteral adventitia" EXACT []
xref: EMAPA:28114
xref: FMA:15892
xref: MA:0002652
xref: SCTID:392273001
xref: SCTID:47879001
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005742 ! adventitia
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000056
intersection_of: UBERON:0005742 ! adventitia
intersection_of: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0000056 ! ureter
[Term]
id: UBERON:0001253
name: lamina propria of ureter
def: "A lamina propria that is part of a ureter [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "lamina propria mucosa of ureter" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of ureter" EXACT [OBOL:automatic]
synonym: "ureter lamina propria" EXACT []
synonym: "ureter lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "ureter lamina propria mucosae" EXACT [OBOL:automatic]
xref: EMAPA:28841
xref: FMA:15896
xref: MA:0002653
xref: SCTID:2771005
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000056
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0001008 ! excretory system
[Term]
id: UBERON:0001254
name: urothelium of ureter
def: "the luminal epithelium of the tube that conducts the urine from the renal pelvis to the bladder" [MP:0000535]
comment: TODO - check MP
synonym: "transitional epithelium of ureter" EXACT []
synonym: "ureter transitional epithelium" EXACT []
synonym: "ureter urothelium" EXACT []
xref: FMA:15897
xref: MA:0002655
xref: MA:0002656
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000365 ! urothelium
relationship: part_of UBERON:0000056
intersection_of: UBERON:0000365 ! urothelium
intersection_of: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0000056 ! ureter
[Term]
id: UBERON:0001255
name: urinary bladder
def: "Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra." [FMA:15900, Wikipedia:Urinary_bladder]
comment: editor note: consider adding a 'bladder' grouping class
subset: major_organ
subset: organ_slim
subset: uberon_slim
synonym: "bladder" EXACT []
synonym: "excretory canal" BROAD []
synonym: "vesica urinaria" RELATED LATIN [Wikipedia:Urinary_bladder]
xref: AAO:0000623
xref: BTO:0001418
xref: EFO:0000290
xref: EHDAA2:0000174
xref: EHDAA:9328
xref: EMAPA:18321
xref: EV:0100098
xref: FMA:15900
xref: GAID:0000004
xref: galen:UrinaryBladder
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Urinary_system.svg/200px-Urinary_system.svg.png
xref: MA:0000380
xref: MAT:0000122
xref: MESH:A.05.810.161
xref: MIAA:0000122
xref: ncithesaurus:Bladder
xref: OpenCyc:Mx4rvVjMmZwpEbGdrcN5Y29ycA
xref: SCTID:302512001
xref: VHOG:0000740
xref: XAO:0000154
property_value: UBPROP:0000001 "Anatomical structure which consists of a membranous sac used to temporarily store urine until it is excreted from the body.[AAO]" xsd:string
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000489 ! cavitated compound organ
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0006554 ! urinary system structure
relationship: develops_from UBERON:0000164 ! primitive urogenital sinus
relationship: part_of UBERON:0001556 {source="FMA"} ! lower urinary tract
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0001256
name: wall of urinary bladder
def: "An anatomical wall that is part of a urinary bladder [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of bladder" EXACT [OBOL:automatic]
synonym: "anatomical wall of urinary bladder" EXACT [OBOL:automatic]
synonym: "bladder anatomical wall" EXACT [OBOL:automatic]
synonym: "bladder wall" EXACT [OBOL:automatic]
synonym: "urinary bladder anatomical wall" EXACT [OBOL:automatic]
synonym: "urinary bladder wall" EXACT []
synonym: "wall of bladder" EXACT [OBOL:automatic]
xref: BTO:0001462
xref: FMA:15902
xref: MA:0002493
xref: ncithesaurus:Bladder_Wall
xref: SCTID:362225003
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001255
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0001257
name: trigone of urinary bladder
def: "The trigone is a smooth triangular region of the internal urinary bladder formed by the two ureteral orifices and the internal urethral orifice. The area is very sensitive to expansion and once stretched to a certain degree, the urinary bladder signals the brain of its need to empty. The signals become stronger as the bladder continues to fill. Embryologically, the trigone of the Bladder is derived from the caudal end of mesonephric ducts. In the Female the mesonephric ducts break down but, thus, the Trigone of the Bladder is less prominent but, still present. [WP,unvetted]." [Wikipedia:Trigone_of_urinary_bladder]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "deep trigone" EXACT []
synonym: "Lieutaud's trigone" EXACT []
synonym: "musculus trigoni vesicae profundus" EXACT [FMA:15910, FMA:TA]
synonym: "trigone of bladder" EXACT []
synonym: "trigonum vesicae" EXACT [FMA:15910, FMA:TA]
synonym: "trigonum vesicae urinariae" RELATED LATIN [Wikipedia:Trigone_of_urinary_bladder]
synonym: "urinary bladder trigone" EXACT []
synonym: "vesical trigone" EXACT []
xref: FMA:15910
xref: galen:TrigoneOfUrinaryBladder
xref: http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_bladder.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_bladder.jpg/200px-Illu_bladder.jpg
xref: MA:0002492
xref: ncithesaurus:Bladder_Trigone
xref: SCTID:272663002
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0001258
name: neck of urinary bladder
def: "The neck of the urinary bladder is the portion of the urinary bladder adjacent to the prostate gland in men. [WP,unvetted]." [Wikipedia:Neck_of_urinary_bladder]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bladder neck" EXACT []
synonym: "cervix vesicae" EXACT [FMA:15912, FMA:TA]
synonym: "cervix vesicae urinariae" RELATED LATIN [Wikipedia:Neck_of_urinary_bladder]
synonym: "collum vesicae" EXACT [FMA:15912, FMA:TA]
synonym: "neck of bladder" EXACT []
synonym: "urinary bladder neck" EXACT []
synonym: "vesical neck" EXACT []
xref: FMA:15912
xref: galen:UrinaryBladderNeck
xref: http://upload.wikimedia.org/wikipedia/commons/6/63/Gray1156.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray1156.png/200px-Gray1156.png
xref: MA:0002491
xref: ncithesaurus:Bladder_Neck
xref: SCTID:362227006
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001560 ! neck of organ
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0001259
name: mucosa of urinary bladder
def: "A mucosa that is part of a urinary bladder [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bladder mucosa" EXACT []
synonym: "bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of urinary bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of bladder" EXACT []
synonym: "mucous membrane of urinary bladder" EXACT []
synonym: "organ mucosa of bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of urinary bladder" EXACT [OBOL:automatic]
synonym: "tunica mucosa (vesica urinaria)" EXACT [FMA:15928, FMA:TA]
synonym: "tunica mucosa vesicae" EXACT [FMA:15928, FMA:TA]
synonym: "urinary bladder mucosa" EXACT []
synonym: "urinary bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "urinary bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "urinary bladder organ mucosa" EXACT [OBOL:automatic]
xref: EFO:0000293
xref: FMA:15928
xref: galen:MucousMembraneOfUrinaryBladder
xref: MA:0001692
xref: ncithesaurus:Bladder_Mucosa
xref: SCTID:362224004
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001255
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001256 ! wall of urinary bladder
[Term]
id: UBERON:0001260
name: serosa of urinary bladder
def: "A serous membrane that is part of a urinary bladder [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "bladder serosa" EXACT []
synonym: "bladder serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of bladder" EXACT []
synonym: "serous coat of bladder" EXACT []
synonym: "serous coat of urinary bladder" EXACT []
synonym: "serous membrane of bladder" EXACT [OBOL:automatic]
synonym: "serous membrane of urinary bladder" EXACT [OBOL:automatic]
synonym: "tunica serosa (vesica urinaria)" EXACT [FMA:15932, FMA:TA]
synonym: "tunica serosa vesicae" EXACT [FMA:15932, FMA:TA]
synonym: "urinary bladder serosa" EXACT []
synonym: "urinary bladder serous membrane" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of urinary bladder" EXACT []
xref: EMAPA:28661
xref: FMA:15932
xref: MA:0001696
xref: SCTID:5868002
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001255
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0001261
name: lamina propria of urinary bladder
def: "A lamina propria that is part of a urinary bladder [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bladder lamina propria" EXACT [OBOL:automatic]
synonym: "bladder lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "bladder lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of bladder" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of urinary bladder" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of bladder" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of urinary bladder" EXACT [OBOL:automatic]
synonym: "lamina propria of bladder" EXACT [OBOL:automatic]
synonym: "urinary bladder lamina propria" EXACT []
synonym: "urinary bladder lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "urinary bladder lamina propria mucosae" EXACT [OBOL:automatic]
xref: EMAPA:30088
xref: FMA:15935
xref: MA:0001695
xref: ncithesaurus:Bladder_Lamina_Propria
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001255
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001259 ! mucosa of urinary bladder
[Term]
id: UBERON:0001262
name: wall of intestine
def: "An anatomical wall that is part of a intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of bowel" EXACT [OBOL:automatic]
synonym: "anatomical wall of intestine" EXACT [OBOL:automatic]
synonym: "bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "bowel wall" EXACT [OBOL:automatic]
synonym: "intestinal wall" EXACT []
synonym: "intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "intestine wall" EXACT []
synonym: "wall of bowel" EXACT [OBOL:automatic]
xref: BTO:0000647
xref: FMA:15949
xref: MA:0002693
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000160
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0000160 ! intestine
[Term]
id: UBERON:0001263
name: pancreatic acinus
def: "the secretory units of the exocrine pancreas, where fluid containing digestive enzymes is produced; consists of a group of secretory cells surrounding a luminal space that connects to the pancreatic duct." [MP:0009145]
comment: This class was created automatically from a combination of ontologies
synonym: "acinus pancreaticus" EXACT LATIN [FMA:16011]
synonym: "pancreas acinus" EXACT []
synonym: "pancreatic acini" RELATED PLURAL []
xref: BTO:0000028
xref: FMA:16011
xref: MA:0002417
xref: ncithesaurus:Pancreatic_Acinus
xref: SCTID:247604006
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0009842 ! acinus
relationship: part_of UBERON:0000017
intersection_of: UBERON:0009842 ! acinus
intersection_of: part_of UBERON:0000017 ! exocrine pancreas
relationship: part_of UBERON:0000017 ! exocrine pancreas
relationship: part_of UBERON:0007324 {source="FMA"} ! pancreatic lobe
[Term]
id: UBERON:0001264
name: pancreas
def: "An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes[GO]. The mature pancreas of higher vertebrates and mammals comprises two major functional units: the exocrine pancreas, which is responsible for the production of digestive enzymes to be secreted into the gut lumen, and the endocrine pancreas, which has its role in the synthesis of several hormones with key regulatory functions in food uptake and metabolism. The exocrine portion constitutes the majority of the mass of the pancreas, and contains only two different cell types, the secretory acinar cells and the ductular cells. The endocrine portion, which comprises only 1–2% of the total mass, contains five different cell types, which are organized into mixed functional assemblies referred to as the islets of Langerhans[PMID]." [GO:0031016, PMID:16417468, Wikipedia:Pancreas]
comment: taxon notes: As a secretory organ serving exocrine and endocrine functions, the pancreas is specific to the vertebrates[PMID:16417468] Hagfishes and lampreys are unique in the complete separation of their endocrine pancreas (islet or- gan) and their exocrine pancreas (50). The endocrine and exocrine pancreas are coassociated in crown gnathostomes (50). In Branchiostoma and Ciona, there is no diverticulum as there is in hagfishes, lampreys, and gnathostomes, only dispersed insulin-secreting cells in the walls of the gastrointestinal tract (51, 52) [PMID:20959416]
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0010112
xref: BTO:0000988
xref: EFO:0000855
xref: EHDAA2:0001367
xref: EHDAA:6893
xref: EMAPA:17503
xref: EMAPA:18816
xref: EV:0100092
xref: FMA:7198
xref: GAID:334
xref: galen:Pancreas
xref: http://upload.wikimedia.org/wikipedia/commons/3/3f/Illu_pancrease.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Illu_pancrease.svg/200px-Illu_pancrease.svg.png
xref: MA:0000120
xref: MAT:0000075
xref: MESH:A.03.734
xref: MIAA:0000075
xref: ncithesaurus:Pancreas
xref: OpenCyc:Mx4rvVimZZwpEbGdrcN5Y29ycA
xref: SCTID:181277001
xref: TAO:0000140
xref: VHOG:0000050
xref: XAO:0000136
xref: ZFA:0000140
property_value: UBPROP:0000001 "Organ which secretes a fluid containing enzymes that aid in the digestion of food.[AAO]" xsd:string
is_a: UBERON:0002075 ! viscus
disjoint_from: UBERON:0010264 ! hepatopancreas
relationship: has_developmental_contribution_from UBERON:0003922 ! pancreatic bud
relationship: has_developmental_contribution_from UBERON:0003923 {source="Wikipedia"} ! dorsal pancreatic bud
relationship: has_developmental_contribution_from UBERON:0003924 {source="Wikipedia"} ! ventral pancreatic bud
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001265
name: trabecula of spleen
comment: This class was created automatically from a combination of ontologies
synonym: "spleen trabeculum" EXACT []
synonym: "splenic trabecula" EXACT []
xref: FMA:16027
xref: MA:0000758
xref: ncithesaurus:Splenic_Trabecula
xref: SCTID:61987002
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000440 ! trabecula
relationship: part_of UBERON:0002106
intersection_of: UBERON:0000440 ! trabecula
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen
[Term]
id: UBERON:0001266
name: splenic cord
def: "A structure found in the red pulp of the spleen between the sinusoids, consisting of fibrils and connective tissue cells with a large population of monocytes and macrophages. These cords contain half of the human body's monocytes as a reserve so that after tissue injury these monocytes can move in and aid locally sourced monocytes in wound healing. Erythrocytes pass through the cords of Billroth before entering the sinusoids. The passage into the sinusoids may be seen as a bottleneck, where erythrocytes need to be flexible in order to pass through. In disorders of erythrocyte shape and/or flexibility, such as hereditary spherocytosis, erythrocytes fail to pass through and get phagocytosed, causing extravascular hemolysis." [Wikipedia:Cords_of_Billroth]
synonym: "cord of Billroth" EXACT [Wikipedia:Cords_of_Billroth]
synonym: "cord of Bilroth" EXACT [FMA:16031]
xref: FMA:16031
xref: MA:0002671
xref: ncithesaurus:Splenic_Cord
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
relationship: part_of UBERON:0001250 {source="MA"} ! red pulp of spleen
[Term]
id: UBERON:0001267
name: femoral nerve
def: "The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]." [Wikipedia:Femoral_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior crural nerve" EXACT []
synonym: "nervus femoralis" RELATED LATIN [Wikipedia:Femoral_nerve]
xref: EHDAA2:0000507
xref: EHDAA:5655
xref: FMA:16486
xref: GAID:850
xref: http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray823.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Gray823.png/200px-Gray823.png
xref: MA:0001167
xref: MESH:A.08.800.800.720.450.250
xref: ncithesaurus:Femoral_Nerve
xref: OpenCyc:Mx4rwGC03JwpEbGdrcN5Y29ycA
xref: SCTID:181051004
xref: VHOG:0001411
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003431 ! leg nerve
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001268
name: peritoneal fluid
def: "Transudate contained in the peritoneal cavity.[FMA]" [FMA:FMA, Wikipedia:Peritoneal_fluid]
subset: uberon_slim
xref: BTO:0001031
xref: FMA:16515
xref: MA:0002531
xref: ncithesaurus:Peritoneal_Fluid
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001179
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: part_of UBERON:0001179 ! peritoneal cavity
relationship: part_of UBERON:0001179 ! peritoneal cavity
[Term]
id: UBERON:0001269
name: acetabular part of hip bone
def: "The acetabulum is a concave surface of the pelvis. The head of the femur meets with the pelvis at the acetabulum, forming the hip joint. There are three bones of the os coxae (hip bone) that come together to form the acetabulum. Contributing a little more than two-fifths of the structure is the ischium, which provides lower and side boundaries to the acetabulum. The ilium forms the upper boundary, providing a little less than two-fifths of the structure of the acetabulum. The rest is formed by the pubis, near the midline. It is bounded by a prominent uneven rim, which is thick and strong above, and serves for the attachment of the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. At the lower part of the acetabulum is the acetabular notch, which is continuous with a circular depression, the acetabular fossa, at the bottom of the cavity of the acetabulum. The rest of the acetabulum is formed by a curved, crescent-moon shaped surface, the lunate surface, where the joint is made with the head of the femur. Its counterpart in the pectoral girdle is the glenoid fossa.[WP,unvetted]." [Wikipedia:Acetabulum]
comment: In reptiles and in birds, the acetabula are deep sockets.[WP] Note that whilst WP defines this as a surface, MA treats it as a bone. There are other FMA classes that may be better suited to representing the surface.
subset: uberon_slim
synonym: "acetabulum" EXACT []
xref: AAO:0000770
xref: EHDAA:10661
xref: FMA:16579
xref: GAID:206
xref: http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Illu_pelvic_girdle.jpg/200px-Illu_pelvic_girdle.jpg
xref: MA:0001335
xref: MESH:A.02.835.232.611.108
xref: ncithesaurus:Acetabulum
xref: OpenCyc:Mx4rwJlP9ZwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0001427
xref: SCTID:182027007
xref: VHOG:0000974
property_value: UBPROP:0000001 "Cavity for the articulation of the proximal bone of the hind limb.[AAO]" xsd:string
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0001486 {source="FMA"} ! hip joint
[Term]
id: UBERON:0001270
name: bony pelvis
def: "In humans, the ring of bone formed by the sacrum and the first few coccygeal vertebrae as the roof, the pubis and ischia as the floor and the ilia and the acetabular part of the ischia as the walls." [http://medical-dictionary.thefreedictionary.com/bony+pelvis]
comment: in FMA, this is part of the axial skeletal system. todo: add taxon-specific part of relations connecting sub-structures to this.
xref: FMA:16580
xref: SCTID:46633002
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
disjoint_from: UBERON:0002355 ! pelvis
[Term]
id: UBERON:0001271
name: pelvic girdle region
def: "Subdivision of lower limb or fin which links the limb/fin to the body[FMA,modified]. Examples: There are only two instances, right and left pelvic girdle regions." [FMA:16581, http://onlinelibrary.wiley.com/doi/10.1002/dvdy.22617/full, https://groups.google.com/d/topic/obo-anatomy/h4R4xKmINrw/discussion]
comment: Note that this class describes the subdivision of the limb/fin, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831). See also comments on obo-anatomy mail list
subset: uberon_slim
subset: vertebrate_core
synonym: "girdle - pelvic" RELATED []
synonym: "pelvic girdle" RELATED INCONSISTENT []
xref: FMA:16581
xref: ncithesaurus:Pelvic_Girdle
xref: SCTID:360010001
xref: VSAO:0000304
property_value: UBPROP:0000001 "Subdivision of lower limb or fin which links the limb/fin to the body[FMA,modified]. There is only one instance of the pelvic girdle region per organism.[VSAO]" xsd:string
is_a: UBERON:0007823 ! appendage girdle region
relationship: part_of UBERON:0010709
intersection_of: UBERON:0007823 ! appendage girdle region
intersection_of: part_of UBERON:0010709 ! pelvic complex
disjoint_from: UBERON:0007832 ! skeleton of pelvic girdle
relationship: part_of UBERON:0010709 ! pelvic complex
[Term]
id: UBERON:0001272
name: pelvic bone
def: "The hip bone, innominate bone or coxal bone is a large, flattened, irregularly shaped bone, constricted in the center and expanded above and below. It has one of the few ball and socket synovial joints in the body – the so called hip joint. It meets its fellow on the opposite side in the middle line in front, and together they form the sides and anterior wall of the pelvic cavity. Together with the sacrum and coccyx, it comprises the pelvis. [WP,unvetted]." [Wikipedia:Hip_bone]
comment: The hip bone first appears in fishes, where it consists of a simple, usually triangular bone, to which the pelvic fin articulates. The hip bones on each side usually connect with each other at the forward end, and are even solidly fused in lungfishes and sharks, but they never attach to the vertebral column[WP]
subset: uberon_slim
synonym: "basipterygium" RELATED []
synonym: "bone of pelvic girdle" EXACT []
synonym: "coxal bone" EXACT []
synonym: "hip bone" EXACT []
synonym: "innominate bone" EXACT []
synonym: "os coxae" EXACT [FMA:16585, FMA:TA]
synonym: "os coxae/os ilium" RELATED LATIN [Wikipedia:Hip_bone]
xref: FMA:16585
xref: GAID:205
xref: http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray341.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray341.png/200px-Gray341.png
xref: MESH:A.02.835.232.611
xref: ncithesaurus:Pelvic_Bone
xref: SCTID:361776002
is_a: UBERON:0007830 ! pelvic girdle bone/zone
is_a: UBERON:0010428 {source="FMA"} ! flat bone
relationship: part_of UBERON:0001464 {source="FMA"} ! hip
relationship: part_of UBERON:0007832 ! skeleton of pelvic girdle
[Term]
id: UBERON:0001273
name: ilium
def: "The ilium is the uppermost and largest bone of the pelvis, and appears in most vertebrates including mammals and birds, but not bony fish." [Wikipedia:Ilium_(bone)]
comment: Note that this is_a hip bone in MA. Taxon notes: All reptiles have an ilium except snakes, although some snake species have a tiny bone which is considered to be an ilium[WP]
subset: uberon_slim
synonym: "os iliacum" EXACT []
synonym: "os ilii" EXACT []
xref: AAO:0000772
xref: EFO:0003049
xref: FMA:16589
xref: GAID:207
xref: galen:Ilium
xref: MA:0001336
xref: MESH:A.02.835.232.611.434
xref: ncithesaurus:Ilium
xref: OpenCyc:Mx4rvhwFJ5wpEbGdrcN5Y29ycA
xref: SCTID:182029005
property_value: "dubious_for_taxon" NCBITaxon:8570
property_value: RO:0002161 NCBITaxon:32443
property_value: UBPROP:0000001 "Paired, rodlike endochondral bones that constitute the anterior pelvic girdle.[AAO]" xsd:string
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0007830 {source="MA"} ! pelvic girdle bone/zone
is_a: UBERON:0008202 {source="MA"} ! bone of hip region
relationship: develops_from UBERON:0010714 {source="cjm"} ! iliac cartilage condensation
relationship: part_of UBERON:0001272 {source="FMA"} ! pelvic bone
relationship: part_of UBERON:0007832 {source="VSAO"} ! skeleton of pelvic girdle
[Term]
id: UBERON:0001274
name: ischium
def: "Endochondral bone that is paired, forming the posterior part of the pelvis, articulating with the pubis and ilium." [VSAO:0005006, VSAO:NI, Wikipedia:Ischium]
comment: Note that this is_a hip bone in MA; in FMA it is a zone of bone organ.
subset: uberon_slim
synonym: "os ischii" RELATED [AAO:0000860]
synonym: "os ischii" RELATED LATIN [Wikipedia:Ischium]
xref: AAO:0000860
xref: FMA:16592
xref: GAID:208
xref: galen:Ischium
xref: http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Illu_pelvic_girdle.jpg/200px-Illu_pelvic_girdle.jpg
xref: MA:0001337
xref: MESH:A.02.835.232.611.548
xref: ncithesaurus:Ischium
xref: OpenCyc:Mx4rvlzMKpwpEbGdrcN5Y29ycA
xref: SCTID:182025004
xref: VSAO:0005006
property_value: UBPROP:0000001 "Paired bones of endochondral origin that constitute the posterior elements of the pelvic girdle. They are synostotically fused to each other and form the posterior part of the acetabulum.[AAO]" xsd:string
is_a: UBERON:0002513 {source="VSAO"} ! endochondral bone
is_a: UBERON:0007830 {source="MA"} ! pelvic girdle bone/zone
is_a: UBERON:0008202 {source="MA"} ! bone of hip region
relationship: develops_from UBERON:0006254 {source="cjm"} ! ischial cartilage condensation
relationship: part_of UBERON:0001272 ! pelvic bone
relationship: part_of UBERON:0007832 {source="VSAO"} ! skeleton of pelvic girdle
[Term]
id: UBERON:0001275
name: pubis
def: "the ventral and anterior of the three principal bones composing either half of the pelvis. it is covered by a layer of fat, which is covered by the mons pubis. It is divisible into a body, a superior ramus and an inferior ramus. The body forms one-fifth of the acetabulum, contributing by its external surface both to the lunate surface and the acetabular fossa. Its internal surface enters into the formation of the wall of the lesser pelvis and gives origin to a portion of the obturator internus. In the female, the pubic bone is anterior to the urethral sponge. The left and right hip bones join at the pubic symphysis. The pubis is the lower limit of the suprapubic region[WP]." [Wikipedia:Pubis_(bone)]
comment: AO notes: isa bone zone in FMA
subset: uberon_slim
synonym: "os pubis" RELATED [Wikipedia:Pubis_%28bone%29]
synonym: "pubic bone" RELATED [Wikipedia:Pubis_%28bone%29]
synonym: "pubis bone" RELATED [Wikipedia:Pubis_%28bone%29]
xref: AAO:0000861
xref: EMAPA:18728
xref: FMA:16595
xref: galen:Pubis
xref: MA:0001338
xref: MESH:A.02.835.232.611.781
xref: ncithesaurus:Pubic_Bone
xref: SCTID:182035005
property_value: UBPROP:0000001 "Paired, cartilaginous (ocassionally calcified) elements that form the ventral portion of the pelvic girdle. Each is located ventral to the acetabulum between the anteroventral margin of the ischium and the posteroventral margin of the illium. When the element calcifies or ossifies, its articulation with adjacent elements is difficult to distinguish. Both pubes are synchondrotically fused to one another.[AAO]" xsd:string
is_a: UBERON:0002513 {source="VSAO"} ! endochondral bone
is_a: UBERON:0007830 {source="MA"} ! pelvic girdle bone/zone
is_a: UBERON:0008202 {source="MA"} ! bone of hip region
relationship: develops_from UBERON:0010718 ! pubic cartilage condensation
relationship: part_of UBERON:0001272 {source="FMA"} ! pelvic bone
relationship: part_of UBERON:0007832 {source="VSAO"} ! skeleton of pelvic girdle
[Term]
id: UBERON:0001276
name: epithelium of stomach
def: "the epithelial layer of the stomach ." [MP:0000471]
comment: in FMA this is classified as simple columnar, MA divides this into squamous and glandular
synonym: "epithelial tissue of stomach" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ventriculus" EXACT [OBOL:automatic]
synonym: "epithelium of ventriculus" EXACT [OBOL:automatic]
synonym: "gastric epithelium" RELATED [BTO:0000500]
synonym: "stomach epithelial tissue" EXACT [OBOL:automatic]
synonym: "stomach epithelium" EXACT [OBOL:automatic]
synonym: "ventriculus epithelial tissue" EXACT [OBOL:automatic]
synonym: "ventriculus epithelium" EXACT [OBOL:automatic]
xref: BTO:0000500
xref: EHDAA2:0001918
xref: FMA:17091
xref: MA:0001610
xref: SCTID:64977002
xref: VHOG:0001433
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003350 ! epithelium of mucosa
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004808 ! gastrointestinal system epithelium
relationship: part_of UBERON:0000945
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001199 ! mucosa of stomach
[Term]
id: UBERON:0001277
name: intestinal epithelium
def: "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005" [Wikipedia:Intestinal_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "bowel epithelial tissue" EXACT [OBOL:automatic]
synonym: "bowel epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bowel" EXACT [OBOL:automatic]
synonym: "epithelial tissue of intestine" EXACT [OBOL:automatic]
synonym: "epithelium of bowel" EXACT [OBOL:automatic]
synonym: "epithelium of intestine" EXACT [OBOL:automatic]
synonym: "intestine epithelial tissue" EXACT [OBOL:automatic]
synonym: "intestine epithelium" RELATED []
synonym: "villous epithelium" EXACT [ZFA:0005124]
xref: BTO:0000781
xref: FMA:17229
xref: MA:0001536
xref: ncithesaurus:Intestinal_Epithelium
xref: SCTID:266135004
xref: TAO:0005124
xref: ZFA:0005124
property_value: UBPROP:0000001 "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005[TAO]" xsd:string
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003350 ! epithelium of mucosa
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004808 ! gastrointestinal system epithelium
relationship: part_of UBERON:0000160
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0001278
name: epithelium of large intestine
def: "An epithelium that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of large intestine" EXACT [OBOL:automatic]
synonym: "large intestinal epithelium" EXACT []
synonym: "large intestine epithelial tissue" EXACT [OBOL:automatic]
synonym: "large intestine epithelium" EXACT []
xref: EMAPA:19257
xref: EMAPA:19262
xref: FMA:17301
xref: MA:0001545
is_a: UBERON:0001277 ! intestinal epithelium
relationship: part_of UBERON:0000059
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001207 ! mucosa of large intestine
[Term]
id: UBERON:0001279
name: portal triad
def: "a component of the hepatic lobule, that consists of: hepatic artery, hepatic portal vein, bile duct, lymphatic vessels, and the branch of the vagus nerve." [Wikipedia:Portal_triad]
comment: The misnomer "portal triad" traditionally has included only the first three structures, and was named before lymphatic vessels were discovered in the structure. It can refer both to the largest branch of each of these vessels running inside the hepatoduodenal ligament, and to the smaller branches of these vessels inside the liver.
subset: uberon_slim
synonym: "trias hepatica" EXACT []
synonym: "trias hepatica" RELATED LATIN [Wikipedia:Portal_triad]
xref: FMA:17523
xref: http://upload.wikimedia.org/wikipedia/commons/6/62/Portal_triad.JPG
xref: MA:0002499
xref: ncithesaurus:Portal_Triad
xref: SCTID:362192000
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001172 ! hepatic acinus
[Term]
id: UBERON:0001280
name: liver parenchyma
alt_id: UBERON:0003223
def: "the functional units of the liver including the lobules." [MP:0008986]
comment: This class was created automatically from a combination of ontologies
synonym: "hepatic parenchyma" EXACT [FMA:17540]
synonym: "hepatic parenchyme" RELATED [VHOG:0000539]
synonym: "liver parenchyme" EXACT [XAO:0000454]
synonym: "parenchyma of liver" EXACT [FMA:17540]
xref: AAO:0010405
xref: EHDAA2:0001004
xref: EHDAA:2201
xref: EMAPA:17203
xref: FMA:17540
xref: MA:0000366
xref: SCTID:363535004
xref: VHOG:0000539
xref: XAO:0000454
is_a: UBERON:0000353 ! parenchyma
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002107
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0002107 ! liver
relationship: develops_from UBERON:0005171 {source="EHDAA2"} ! hepatic duct
relationship: develops_from UBERON:0008835 {source="XAO"} ! hepatic diverticulum
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001281
name: hepatic sinusoid
alt_id: UBERON:0003275
def: "Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "hepatic sinusoids" RELATED []
synonym: "liver sinusoid" EXACT []
synonym: "liver sinusoidal blood vessel" EXACT [OBOL:automatic]
synonym: "sinusoid of liver" EXACT [OBOL:automatic]
synonym: "sinusoidal blood vessel of liver" EXACT [OBOL:automatic]
synonym: "vas capillare sinusoideum" EXACT []
xref: EHDAA2:0000999
xref: EMAPA:17365
xref: FMA:17543
xref: MA:0000367
xref: ncithesaurus:Hepatic_Sinusoid
xref: SCTID:67435004
xref: TAO:0005091
xref: VHOG:0000708
xref: ZFA:0005091
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003497 ! abdomen blood vessel
is_a: UBERON:0003909 ! sinusoid
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0002107
intersection_of: UBERON:0003909 ! sinusoid
intersection_of: part_of UBERON:0002107 ! liver
relationship: develops_in UBERON:0001113 ! lobe of liver
relationship: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0004647 ! liver lobule
[Term]
id: UBERON:0001282
name: intralobular bile duct
def: "The Canals of Hering, or intrahepatic bile ductules, are part of the outflow system of exocrine bile product from the liver." [Wikipedia:Canals_of_Hering]
comment: Editor notes: Note that this is part of the intrahepatic bile duct in MA, as this class is more alike the tree in FMA. Note also that SCT has canal of Hering and Entire IBduct as the only sibling terms under 'Structure of intralobular bile duct' (i.e. the CoH is the only part of the entire IBduct)
subset: uberon_slim
synonym: "canal of Hering" RELATED []
synonym: "canal of Herring" EXACT [FMA:17545]
synonym: "canals of Hering" RELATED PLURAL [Wikipedia:Canals_of_Hering]
synonym: "cholangiole" EXACT []
synonym: "cholangiole" EXACT [FMA:17545]
synonym: "duct of Herring" RELATED [Wikipedia:Canals_of_Hering]
synonym: "intrahepatic bile ductule" RELATED [Wikipedia:Canals_of_Hering]
xref: BTO:0002840
xref: FMA:17545
xref: MA:0002669
xref: ncithesaurus:Canal_of_Hering
xref: SCTID:227002
xref: SCTID:269922006
is_a: UBERON:0003704 {source="FMA"} ! intrahepatic bile duct
relationship: part_of UBERON:0001172 {source="FMA"} ! hepatic acinus
relationship: part_of UBERON:0004647 {source="FMA"} ! liver lobule
[Term]
id: UBERON:0001283
name: bile canaliculus
def: "Fine tubular canals running between liver cells, throughout the parenchyma, usually occurring singly between each adjacent pair of cells, and forming a three-dimensional network of polyhedral meshes, with a single cell in each mesh[BTO]. A thin tube that collects bile secreted by hepatocytes. The bile canaliculi merge and form bile ductules, which eventually become common hepatic duct. Hepatocytes are polyhedral in shape, therefore having no set shape or design. They have surfaces facing the sinusoids, (called sinusoidal faces) and surfaces which contact other hepatocytes, (called lateral faces). Bile canaliculi are formed by grooves on some of the lateral faces of these hepatocytes. Microvilli are present in the canaliculi but are sparse. [WP,unvetted]." [BTO:0002841, Wikipedia:Bile_canaliculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "bile canaliculi" RELATED PLURAL [Wikipedia:Bile_canaliculus]
synonym: "bile capillary" RELATED [BTO:0002841]
synonym: "biliary canaliculus" RELATED [BTO:0002841]
xref: BTO:0002841
xref: FMA:17547
xref: http://upload.wikimedia.org/wikipedia/commons/d/d9/Gray1094.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d9/Gray1094.png/200px-Gray1094.png
xref: MA:0002495
xref: MESH:A.03.159.183.158.125
xref: ncithesaurus:Bile_Canaliculus
xref: SCTID:270023005
xref: TAO:0005163
xref: ZFA:0005163
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001172 {source="FMA"} ! hepatic acinus
relationship: part_of UBERON:0002394 {source="BTO"} ! bile duct
relationship: part_of UBERON:0004647 {source="FMA"} ! liver lobule
relationship: part_of UBERON:0005452 {source="FMA"} ! hepatic plate
[Term]
id: UBERON:0001284
name: renal column
def: "The renal column (or Bertin column, or column of Bertin) is a medullary extension of the renal cortex in between the renal pyramids. It allows the cortex to be better anchored. Each column consists of lines of blood vessels and urinary tubes and a fibrous material. [WP,unvetted]." [Wikipedia:Renal_column]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "columnae renales" RELATED LATIN [Wikipedia:Renal_column]
synonym: "renal column of bertini" EXACT []
xref: FMA:17633
xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Illu_kidney2.jpg/200px-Illu_kidney2.jpg
xref: MA:0001651
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002189 ! outer cortex of kidney
[Term]
id: UBERON:0001285
name: nephron
def: "The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]" [PMID:9268568, Wikipedia:Nephron]
comment: Editor note: kidney terms require review for cross-vertebrate compatibility and developmental relationships. Taxon notes: In the avian kidney, three types of nephron are identified: mammalian-type nephrons with long and short loops of Henle, and reptilian type nephrons (Gambaryan, 1992)[GO Kidney]
subset: uberon_slim
subset: vertebrate_core
synonym: "mature nephron" NARROW [EMAPA:28491]
synonym: "nephroneum" RELATED LATIN [Wikipedia:Nephron]
synonym: "tubulus renalis" RELATED LATIN [Wikipedia:Nephron]
xref: BTO:0000924
xref: EMAPA:28491
xref: EV:0100384
xref: FMA:17640
xref: GAID:428
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0000375
xref: MESH:A.05.810.453.736
xref: ncithesaurus:Nephron
xref: SCTID:361337001
xref: TAO:0002153
xref: ZFA:0005282
property_value: UBPROP:0000001 "Functional unit of the kidney that filters waste.[TAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0006554 ! urinary system structure
relationship: develops_from UBERON:0004208 {evidence="definitional"} ! nephrogenic mesenchyme
relationship: part_of UBERON:0007684 {source="FMA"} ! uriniferous tubule
[Term]
id: UBERON:0001286
name: Bowman's space
def: "a narrow chalice-shaped cavity between the glomerular and capsular epithelium of the glomerular capsule of the kidney[TFD]. Between the visceral and parietal layers, into which the filtrate enters after passing through the podocytes' filtration slits[WP]. luminal region between the glomerular capsule visceral and parietal layers, into which filtrate enters after passing through the filtration barrier from the glomerular capillaries[MP]" [http://medical-dictionary.thefreedictionary.com/bowman's+space, MP:0011499, Wikipedia:Bowman's_space]
comment: TODO - fix ZFA
subset: uberon_slim
subset: vertebrate_core
synonym: "bowman's space" EXACT []
synonym: "capsular space" EXACT [http://medical-dictionary.thefreedictionary.com/bowman's+space]
synonym: "glomerular capsule space" EXACT [MP:0011499]
synonym: "glomerular urinary space" EXACT [MP:0011499]
synonym: "inter-glomerular space" EXACT [ZFA:0005312]
synonym: "inter-glomerular space" EXACT [ZFA:0005283]
synonym: "pronephric capsular space" EXACT [ZFA:0005312]
synonym: "renal capsular space" EXACT [ZFA:0005283]
synonym: "urinary space" EXACT []
synonym: "urinary space of renal corpuscle" EXACT [EMAPA:28263]
xref: EMAPA:27985
xref: EMAPA:28263
xref: FMA:17676
xref: MA:0001664
xref: ncithesaurus:Urinary_Space
xref: SCTID:244284006
xref: TAO:0005283
xref: TAO:0005312
xref: ZFA:0005283
xref: ZFA:0005312
property_value: UBPROP:0000001 "Space between the renal glomerulus and the glomerular capsule. Renal filtrate collects here then passes into the renal tubule.[TAO]" xsd:string
property_value: UBPROP:0000001 "Space between the renal glomerulus and the glomerular capsule. Renal filtrate collects here then passes into the renal tubule.[TAO]" xsd:string
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001230 ! glomerular capsule
[Term]
id: UBERON:0001287
name: proximal convoluted tubule
def: "The proximal tubule is the portion of the duct system of the nephron of the kidney which leads from Bowman's capsule to the loop of Henle[WP]" [Wikipedia:Proximal_convoluted_tubule]
comment: TODO - cleanly define difference between proximal tubule and proximal convoluted tubule. Make definition applicable across species.
subset: uberon_slim
subset: vertebrate_core
synonym: "1st convoluted tubule" RELATED []
synonym: "first convoluted tubule" RELATED []
synonym: "PCT" RELATED []
synonym: "proximal convoluted renal tubule" EXACT []
synonym: "tubulus contortus proximalis" EXACT []
synonym: "tubulus contortus proximalis" RELATED LATIN [Wikipedia:Proximal_convoluted_tubule]
xref: EMAPA:28287
xref: EV:0100388
xref: FMA:17693
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0001669
xref: ncithesaurus:Proximal_Convoluted_Tube
xref: SCTID:362220008
xref: TAO:0005290
xref: ZFA:0005290
property_value: UBPROP:0000001 "Renal tubule that connects to the renal corpuscle.[TAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004134 ! proximal tubule
is_a: UBERON:0006534 ! renal convoluted tubule
relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme
relationship: part_of UBERON:0001225 {notes="checkme"} ! cortex of kidney
[Term]
id: UBERON:0001288
name: loop of Henle
def: "Portion of the nephron that leads from the proximal convoluted tubule to the distal convoluted tubule. The loop has a hairpin bend in the renal medulla. The main function of this structure is to create a concentration gradient in the medulla of the kidney. By means of a countercurrent multiplier system, which utilizes sodium pumps, it creates an area of high sodium concentration deep in the medulla, near the collecting duct. Water present in the filtrate in the collecting duct flows through aquaporin channels out of the collecting duct, moving passively down its concentration gradient. This process reabsorbs water and creates a concentrated urine for excretion[WP]." [Wikipedia:Loop_of_Henle]
comment: Note that the definitions of some kidney parts refer to Henle's loop, even in species where this may not be present. Requires review.
subset: uberon_slim
synonym: "Henle loop" EXACT []
synonym: "henle's loop" EXACT []
xref: BTO:0004608
xref: EMAPA:29665
xref: EMAPA:29679
xref: EV:0100390
xref: FMA:17698
xref: GAID:437
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0001675
xref: MESH:A.05.810.453.736.560.610
xref: ncithesaurus:Loop_of_Henle
xref: SCTID:361335009
xref: VHOG:0001270
is_a: UBERON:0007685 ! region of nephron tubule
relationship: continuous_with UBERON:0001287
relationship: continuous_with UBERON:0001292
intersection_of: UBERON:0007685 ! region of nephron tubule
intersection_of: continuous_with UBERON:0001287 ! proximal convoluted tubule
intersection_of: continuous_with UBERON:0001292 ! distal convoluted tubule
relationship: continuous_with UBERON:0001287 ! proximal convoluted tubule
relationship: continuous_with UBERON:0001292 ! distal convoluted tubule
[Term]
id: UBERON:0001289
name: descending limb of loop of Henle
def: "Portion of the renal tubule constituting the first part of the loop of Henle[WP]." [Wikipedia:Descending_limb_of_loop_of_henle]
subset: uberon_slim
synonym: "descending limb" BROAD []
synonym: "descending limb of Henle's loop" EXACT []
synonym: "loop of Henle descending limb" EXACT []
xref: FMA:17705
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0001679
xref: ncithesaurus:Descending_Limb_of_the_Henle_s_Loop
xref: SCTID:245350001
is_a: UBERON:0007685 {source="FMA"} ! region of nephron tubule
relationship: part_of UBERON:0001288 {source="FMA"} ! loop of Henle
[Term]
id: UBERON:0001290
name: proximal straight tubule
alt_id: UBERON:0005166
def: "part of the descending limb of the renal tubule, extending from the proximal convoluted tubule to the thin tubule[BTO]." [BTO:0000055, Wikipedia:Proximal_straight_tubule]
comment: TODO - is S3 exactly coincident with PST? Check also relationship to DL. todo - ensure relationships work across species (loop of Henle)
subset: uberon_slim
subset: vertebrate_core
synonym: "pars recta" RELATED []
synonym: "pars recta tubuli renalis" RELATED [BTO:0000055]
synonym: "proximal tubule segment 3" RELATED [MA:0002614]
synonym: "S3" EXACT [GO:0072020]
synonym: "thick descending limb of proximal tubule" EXACT []
synonym: "tubulus rectus proximalis" EXACT []
xref: BTO:0000055
xref: EMAPA:29661
xref: FMA:17716
xref: MA:0002614
xref: TAO:0005291
xref: ZFA:0005291
property_value: UBPROP:0000001 "Portion of the renal tubule which is just posterior to the proximal convoluted tubule.[TAO]" xsd:string
is_a: UBERON:0006853 ! renal cortex tubule
is_a: UBERON:0008404 ! proximale tubular epithelium
relationship: part_of UBERON:0001289 {source="MA"} ! descending limb of loop of Henle
relationship: part_of UBERON:0004134 {source="MA-isa"} ! proximal tubule
relationship: part_of UBERON:0006542 {source="MA"} ! outer medulla outer stripe loop of henle
[Term]
id: UBERON:0001291
name: thick ascending limb of loop of Henle
def: "a segment of the nephron in the kidney. It can be divided into two parts: that in the renal medulla, and that in the renal cortex[Wikipedia:Thick_ascending_limb_of_loop_of_Henle]." [Wikipedia:Thick_ascending_limb_of_loop_of_Henle]
comment: TODO: thick/thin check. Also - does the loop of Henle overlap the distal convoluted tubule? FMA divides DCT into straight and convoluted portions
subset: uberon_slim
synonym: "ascending thick limb" EXACT []
synonym: "distal straight tubule" EXACT []
synonym: "loop of Henle ascending limb thick segment" EXACT [MA:0001677]
synonym: "straight portion of distal convoluted renal tubule" EXACT []
synonym: "straight portion of distal convoluted tubule" EXACT [FMA:17722]
synonym: "thick ascending limb" EXACT []
synonym: "thick ascending limb of distal tubule" EXACT [FMA:17722]
synonym: "thick ascending limb of Henle's loop" EXACT []
synonym: "tubulus rectus distalis" EXACT [FMA:17722]
synonym: "tubulus rectus distalis" RELATED LATIN [Wikipedia:Thick_ascending_limb_of_loop_of_Henle]
xref: EMAPA:28396
xref: EMAPA:29671
xref: FMA:17722
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0001677
xref: SCTID:244953001
is_a: UBERON:0004135 ! distal tubule
is_a: UBERON:0008408 ! distal tubular epithelium
relationship: part_of UBERON:0005164 ! ascending limb of loop of Henle
[Term]
id: UBERON:0001292
name: distal convoluted tubule
def: "a portion of kidney nephron between the loop of Henle and the collecting duct system." [Wikipedia:Distal_convoluted_tubule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "distal convoluted renal tubule" EXACT []
synonym: "second convoluted tubule" RELATED []
synonym: "tubulus contortus distalis" EXACT []
synonym: "tubulus contortus distalis" RELATED LATIN [Wikipedia:Distal_convoluted_tubule]
xref: EMAPA:28393
xref: EV:0100389
xref: FMA:17721
xref: http://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Kidney_nephron.png/200px-Kidney_nephron.png
xref: MA:0001666
xref: ncithesaurus:Distal_Convoluted_Tubule
xref: SCTID:361336005
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004135 ! distal tubule
is_a: UBERON:0006534 ! renal convoluted tubule
is_a: UBERON:0006853 ! renal cortex tubule
relationship: develops_from UBERON:0003220 ! metanephric mesenchyme
relationship: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0007685 ! region of nephron tubule
[Term]
id: UBERON:0001293
name: outer medulla of kidney
def: "The renal outer medulla is the region of the kidney that lies between the renal cortex and the renal inner medulla[GO]." [GOC:mtg_kidney_jan10]
synonym: "kidney outer medulla" RELATED [BTO:0001746]
synonym: "outer renal medulla" EXACT []
synonym: "outer zone of medulla of kidney" EXACT []
synonym: "outer zone of renal medulla" EXACT []
synonym: "renal outer medulla" EXACT [BTO:0001746]
synonym: "zona externa (medullaris renalis)" EXACT [FMA:17733, FMA:TA]
xref: BTO:0001746
xref: EMAPA:28310
xref: FMA:17733
xref: MA:0001653
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000362 ! renal medulla
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001294
name: inner medulla of kidney
def: "Innermost region of the mammalian kidney." [GO:0072053]
comment: Taxon notes: unique to mammals[GO:0072053]
synonym: "inner renal medulla" EXACT []
synonym: "inner zone of medulla of kidney" EXACT []
synonym: "inner zone of renal medulla" EXACT []
synonym: "kidney inner medulla" RELATED [BTO:0001745]
synonym: "renal inner medulla" EXACT [BTO:0001745]
synonym: "set of inner region of renal pyramids" EXACT []
synonym: "zona interna (medullaris renalis)" EXACT [FMA:17734, FMA:TA]
xref: BTO:0001745
xref: EMAPA:28349
xref: FMA:17734
xref: MA:0001652
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000362 ! renal medulla
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001295
name: endometrium
def: "inner membrane of the mammalian uterus." [Wikipedia:Endometrium]
comment: AO notes: in FMA this is subdivided into basal and outer. In MA there is a single child term, endometrium epithelium
subset: uberon_slim
synonym: "tunica mucosa (endometrium)" EXACT []
synonym: "tunica mucosa uteri" RELATED LATIN [Wikipedia:Endometrium]
xref: BTO:0001422
xref: EFO:0000980
xref: EMAPA:29917
xref: EV:0100115
xref: FMA:17742
xref: GAID:377
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg
xref: MA:0000390
xref: MAT:0000319
xref: MESH:A.05.360.319.679.490
xref: MIAA:0000319
xref: ncithesaurus:Endometrium
xref: SCTID:278867007
xref: VHOG:0001285
is_a: UBERON:0004923 ! organ component layer
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0001296
name: myometrium
def: "middle layer of the uterine wall consisting of smooth muscle cells and supporting stromal and vascular tissue." [http://en.wikipedia.org/wiki/Myometrium, Wikipedia:Myometrium]
comment: The inner layer of the uterine wall is the endometrium or uterine lining, and the outer layer the serosa or perimetrium. The myometrium stretches (the smooth muscle cells expand in both size and number[1]) during pregnancy to allow for the harboring of the pregnancy, and contracts in a coordinated fashion during the process of labor. After delivery the myometrium contracts to expel the placenta and reduce blood loss.
subset: uberon_slim
synonym: "tunica muscularis" RELATED LATIN [Wikipedia:Myometrium]
synonym: "tunica muscularis (myometrium)" EXACT []
synonym: "uterine smooth muscle" RELATED []
xref: BTO:0000907
xref: EFO:0001970
xref: EMAPA:29923
xref: EV:0100116
xref: FMA:17743
xref: GAID:171
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg
xref: MA:0000391
xref: MESH:A.02.633.570.500
xref: MeSH:D009215
xref: ncithesaurus:Myometrium
xref: SCTID:279879004
xref: VHOG:0001281
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0004923 ! organ component layer
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000995 ! uterus
relationship: surrounded_by UBERON:0001297 ! serosa of uterus
relationship: surrounds UBERON:0001295 ! endometrium
[Term]
id: UBERON:0001297
name: serosa of uterus
def: "Outer serosa layer of the uterus." [Wikipedia:Perimetrium]
comment: TODO - check for parallel structure with peritoneum
synonym: "perimetrium" EXACT [http://en.wikipedia.org/wiki/Perimetrium]
synonym: "serous coat of uterus" EXACT []
synonym: "serous membrane of uterus" EXACT [OBOL:automatic]
synonym: "tunica serosa (perimetrium)" EXACT []
synonym: "tunica serosa uteri" EXACT [FMA:17744, FMA:TA]
synonym: "tunica serosa uteri" RELATED LATIN [Wikipedia:Perimetrium]
synonym: "uterine serosa" EXACT []
synonym: "uterus serosa" EXACT []
synonym: "uterus serous membrane" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of uterus" EXACT []
xref: FMA:17744
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg
xref: MA:0001729
xref: ncithesaurus:Perimetrium
xref: SCTID:253705006
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000995
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0000995 ! uterus
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0001298
name: psoas major muscle
def: "The psoas major is a long fusiform muscle placed on the side of the lumbar region of the vertebral column and brim of the lesser pelvis. It joins the iliacus muscle to form the iliopsoas. In less than 50 per cent of subjects the psoas major is accompanied by the psoas minor. [WP,unvetted]." [Wikipedia:Psoas_major_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "m. psoas major" RELATED LATIN [Wikipedia:Psoas_major_muscle]
synonym: "psoas major" EXACT [MA:0002358]
xref: BTO:0001877
xref: EMAPA:18169
xref: FMA:18060
xref: http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: MA:0002358
xref: ncithesaurus:Psoas_Major
xref: OpenCyc:Mx4rwU5ZfZwpEbGdrcN5Y29ycA
xref: SCTID:244952006
is_a: UBERON:0008450 {source="MA"} ! psoas muscle
relationship: has_muscle_insertion UBERON:0002504 {notes="in the lesser trochanter of the femur", source="dbpedia"} ! lesser trochanter
relationship: has_muscle_nerve UBERON:0009624 {source="dbpedia", notes="Lumbar plexus via anterior branches of L1-L3 nerves"} ! lumbar nerve
relationship: has_muscle_origin UBERON:0001077 {notes="Transverse processes of T12-L5 and the lateral aspects of the discs between them", source="dbpedia"} ! transverse process of vertebra
[Term]
id: UBERON:0001299
name: glans penis
def: "The glans penis (or simply glans) is the sensitive bulbous structure at the distal end of the penis. It is also commonly referred to as the 'head' of the penis. Slang terms include 'helmet', 'nob' (or 'knob'), and 'bell end', and all refer to its distinctive shape. The glans penis is anatomically homologous to the clitoral glans of the female. When the penis is flaccid it is wholly or partially covered by the foreskin, except in men who have been fully circumcised. The foreskin serves to protect this delicate mucous membrane covered structure. [WP,unvetted]." [Wikipedia:Glans_penis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "balanus" RELATED [BTO:0003118]
xref: BTO:0003118
xref: EMAPA:18988
xref: EMAPA:29288
xref: EV:0100108
xref: FMA:18247
xref: GAID:0000012
xref: http://upload.wikimedia.org/wikipedia/commons/1/13/Anteriorglanspenis.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png
xref: MA:0002726
xref: ncithesaurus:Glans_Penis
xref: OpenCyc:Mx4rvdCpE5wpEbGdrcN5Y29ycA
xref: SCTID:263378009
xref: VHOG:0001475
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000989 ! penis
[Term]
id: UBERON:0001300
name: scrotum
def: "In some male mammals the scrotum (also referred to as the cod) is a protuberance of skin and muscle containing the testicles. It is an extension of the abdomen, and is located between the penis and anus. In humans and some other mammals, the base of the scrotum becomes covered with pubic hair at puberty. In common speech, the scrotum is often improperly referred to as the testicles, which actually refer to organs encased inside the scrotum. The scrotum is homologous to the labia majora in females. It becomes tight when sexually aroused. [WP,unvetted]." [Wikipedia:Scrotum]
subset: uberon_slim
xref: BTO:0003098
xref: EMAPA:19296
xref: FMA:18252
xref: GAID:393
xref: galen:Scrotum
xref: http://upload.wikimedia.org/wikipedia/commons/a/a6/Scrotum_warm_and_cold.jpg
xref: http://upload.wikimedia.org/wikipedia/en/thumb/3/3e/HairedHumanScrotum.png/200px-HairedHumanScrotum.png
xref: MA:0000409
xref: MESH:A.05.360.444.661
xref: ncithesaurus:Scrotum
xref: OpenCyc:Mx4rwUC_upwpEbGdrcN5Y29ycA
xref: SCTID:265794003
is_a: UBERON:0000475 ! organism subdivision
is_a: UBERON:0005156 ! reproductive structure
relationship: develops_from UBERON:0011756 {source="Wikipedia"} ! male genital swelling
relationship: part_of UBERON:0004053 ! external male genitalia
[Term]
id: UBERON:0001301
name: epididymis
def: "A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens." [Wikipedia:Epididymis]
comment: Taxon notes: A similar, but probably non-homologous, structure is found in cartilaginous fishes[WP]. Kardong has epididymis in elasmobranch.Structures notes: Typically divided into three main regions. In reptiles, there is an additional canal between the testis and the head of the epididymis, which receives the various efferent ducts. This is, however, absent in all birds and mammals. The epididymis is covered by a two layered pseudostratified epithelium. The epithelium is separated by a basement membrane from the connective tissue wall which has smooth muscle cells.
subset: uberon_slim
synonym: "epididymus" EXACT []
xref: BTO:0000408
xref: EFO:0000982
xref: EMAPA:19290
xref: EV:0100103
xref: FMA:18255
xref: GAID:397
xref: galen:Epididymis
xref: http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_testis_surface.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_testis_surface.jpg/200px-Illu_testis_surface.jpg
xref: MA:0000397
xref: MAT:0000130
xref: MESH:A.05.360.444.849.286
xref: MIAA:0000130
xref: ncithesaurus:Epididymis
xref: SCTID:181432000
xref: VHOG:0001265
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: channels_from UBERON:0006946 ! efferent duct
relationship: channels_into UBERON:0001000 ! vas deferens
relationship: develops_from UBERON:0003074 {source="Wikipedia"} ! mesonephric duct
relationship: part_of UBERON:0006947 {source="FMA"} ! male genital duct
[Term]
id: UBERON:0001302
name: right uterine tube
def: "A fallopian tube that is part of a right side of organism [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "right fallopian tube" EXACT []
synonym: "right oviduct" EXACT []
xref: FMA:18483
xref: MA:0001717
xref: ncithesaurus:Right_Fallopian_Tube
xref: SCTID:280106006
is_a: UBERON:0003889 ! fallopian tube
relationship: in_right_side_of UBERON:0000468
intersection_of: UBERON:0003889 ! fallopian tube
intersection_of: in_right_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_right_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0001303
name: left uterine tube
def: "A fallopian tube that is part of a left side of organism [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "left fallopian tube" EXACT []
synonym: "left oviduct" EXACT []
xref: FMA:18484
xref: MA:0001716
xref: ncithesaurus:Left_Fallopian_Tube
xref: SCTID:280107002
is_a: UBERON:0003889 ! fallopian tube
relationship: in_left_side_of UBERON:0000468
intersection_of: UBERON:0003889 ! fallopian tube
intersection_of: in_left_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0001304
name: germinal epithelium of ovary
def: "layer of simple cuboidal cells covering surface of ovary[WP]." [http://en.wikipedia.org/wiki/Talk:Germinal_epithelium_%28female%29, PMID:16923182, Wikipedia:Germinal_epithelium_(female)]
comment: Controversial - see article. Requires expert input. Also check BTO placement
synonym: "epithelium superficiale (ovarium)" EXACT []
synonym: "female coelomic epithelium" RELATED [EMAPA:17384]
synonym: "germinal epithelium (female)" EXACT [Wikipedia:Germinal_epithelium_(female)]
synonym: "ovarian surface epithelium" EXACT [BTO:0004483]
synonym: "ovary germinal epithelium" EXACT []
synonym: "surface epithelium of ovary" EXACT []
xref: BTO:0004483
xref: EHDAA:8126
xref: EMAPA:27564
xref: FMA:18629
xref: MA:0001711
xref: ncithesaurus:Ovarian_Surface_Epithelium
xref: RETIRED_EHDAA2:0001361
xref: SCTID:258308007
xref: VHOG:0000630
is_a: UBERON:0000484 ! simple cuboidal epithelium
relationship: part_of UBERON:0001307
intersection_of: UBERON:0000484 ! simple cuboidal epithelium
intersection_of: part_of UBERON:0001307 ! capsule of ovary
relationship: part_of UBERON:0001307 ! capsule of ovary
[Term]
id: UBERON:0001305
name: ovarian follicle
def: "Ovarian follicles are the basic units of female reproductive biology, each of which is composed of roughly spherical aggregations of cells found in the ovary. They contain a single oocyte (aka ovum or egg). These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte in humans. These eggs/ova are only developed once every menstrual cycle (e.g. once a month in humans)[WP]." [Wikipedia:Ovarian_follicle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "egg follicle" RELATED []
synonym: "follicle of ovary" EXACT []
synonym: "follicle of ovary viewed macroscopically" EXACT [FMA:18640]
synonym: "folliculi ovarici primarii, folliculi ovarici vesiculosi" RELATED LATIN [Wikipedia:Ovarian_follicle]
synonym: "ovary follicle" EXACT []
xref: BTO:0000475
xref: FMA:18640
xref: GAID:371
xref: http://upload.wikimedia.org/wikipedia/commons/c/ca/Human_ovarian_follicle.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Primary_follicle-4.JPG/200px-Primary_follicle-4.JPG
xref: MA:0001707
xref: MAT:0000449
xref: MESH:A.05.360.319.114.630.535
xref: ncithesaurus:Ovarian_Follicle
xref: SCTID:361111009
xref: TAO:0001110
xref: VHOG:0001536
xref: ZFA:0001110
property_value: UBPROP:0000001 "Oocyte development of zebrafish has been divided into five stages based on morphological criteria and on physiological and biochemical events. Stage I follicles (less than 140 microns) are primary growth stage, stage II follicles (140-340 microns) are cortical alveolus stage, stage III (340-690 microns) are vitellogenesis, stage IV (690-730 microns) are oocyte maturation, and stage V follicles are matured egg. Selman et al, 1993.[TAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! reproductive structure
relationship: develops_from UBERON:0005296 ! ovary sex cord
relationship: part_of UBERON:0000992 ! female gonad
[Term]
id: UBERON:0001306
name: cumulus oophorus
def: "At one part of the mature follicle, the cells of the membrana granulosa are collected into a mass which projects into the cavity of the follicle. This cluster of cells is termed the cumulus oophorus (Latin cumulus=heap, Greek oo=egg + phorus=carrying) discus proligerus, and it is released with the embedded oocyte during ovulation. In order for fertilization to occur this layer must be penetrated by the spermatocyte. [WP,unvetted]." [Wikipedia:Cumulus_oophorus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cumulus ovaricus" EXACT []
xref: FMA:18659
xref: http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1164.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1164.png/200px-Gray1164.png
xref: MA:0002414
xref: SCTID:258586009
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001305 ! ovarian follicle
relationship: part_of UBERON:0005170 ! ovary stratum granulosum
[Term]
id: UBERON:0001307
name: capsule of ovary
comment: This class was created automatically from a combination of ontologies
synonym: "ovarian capsule" EXACT []
synonym: "ovary capsule" EXACT []
xref: FMA:18662
xref: MA:0001706
xref: ncithesaurus:Ovarian_Capsule
xref: SCTID:258491008
is_a: UBERON:0003893 ! capsule
relationship: surrounds UBERON:0000992
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0000992 ! female gonad
relationship: surrounds UBERON:0000992 ! female gonad
[Term]
id: UBERON:0001308
name: external iliac artery
def: "The external iliac artery is a large artery in the pelvic region that carries blood to the lower limb. The external iliac artery is a paired artery, meaning there is one on each side of the body: a right external iliac artery and left external iliac artery. The external iliac artery is accompanied by the external iliac vein, which is located posterior to the artery. [WP,unvetted]." [Wikipedia:External_iliac_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria iliaca externa" RELATED LATIN [Wikipedia:External_iliac_artery]
xref: BTO:0004666
xref: EHDAA2:0000463
xref: EHDAA:4337
xref: EMAPA:17614
xref: FMA:18805
xref: galen:ExternalIliacArtery
xref: http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray539.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray539.png/200px-Gray539.png
xref: MA:0001973
xref: ncithesaurus:External_Iliac_Artery
xref: OpenCyc:Mx4rvkh47pwpEbGdrcN5Y29ycA
xref: SCTID:181352000
is_a: UBERON:0005609 {source="MA"} ! iliac artery
relationship: part_of UBERON:0001191 ! common iliac artery
[Term]
id: UBERON:0001309
name: internal iliac artery
def: "The internal iliac artery (formerly known as the hypogastric artery) is the main artery of the pelvis. [WP,unvetted]." [Wikipedia:Internal_iliac_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria iliaca interna" RELATED LATIN [Wikipedia:Internal_iliac_artery]
synonym: "hypogastric artery" RELATED [BTO:0004667]
xref: BTO:0004667
xref: EMAPA:17860
xref: FMA:18808
xref: galen:InternalIliacArtery
xref: http://upload.wikimedia.org/wikipedia/commons/d/d3/Iliac_artery_bifurcation.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d3/Iliac_artery_bifurcation.PNG/200px-Iliac_artery_bifurcation.PNG
xref: MA:0001974
xref: ncithesaurus:Internal_Iliac_Artery
xref: SCTID:181346001
is_a: UBERON:0005609 {source="MA"} ! iliac artery
relationship: part_of UBERON:0001191 ! common iliac artery
[Term]
id: UBERON:0001310
name: umbilical artery
def: "The umbilical artery is a paired artery (with one for each half of the body) that is found in the abdominal and pelvic regions. In the fetus, it extends into the umbilical cord. [WP,unvetted]." [Wikipedia:Umbilical_artery]
comment: Editor notes: todo - compare with EHDAA2. Check embryonic vs extraembryonic, developmental relationships
subset: uberon_slim
synonym: "a. umbilicalis" RELATED LATIN [Wikipedia:Umbilical_artery]
xref: BTO:0000841
xref: EHDAA:1026
xref: EHDAA:410
xref: EMAPA:16331
xref: EMAPA:16372
xref: FMA:18820
xref: GAID:516
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png
xref: MA:0002072
xref: MESH:A.07.231.114.929
xref: ncithesaurus:Umbilical_Artery
xref: OpenCyc:Mx4rCWdhMGWbEd2AAABQjYGu0g
xref: RETIRED_EHDAA2:0002106
xref: SCTID:261404000
is_a: UBERON:0001637 ! artery
is_a: UBERON:0010260 ! umbilical blood vessel
relationship: overlaps UBERON:0002331 {source="cjm"} ! umbilical cord
[Term]
id: UBERON:0001311
name: inferior vesical artery
def: "The INF vesical artery is an artery in the pelvis that supplies the lower part of the bladder. [WP,unvetted]." [Wikipedia:Inferior_vesical_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria vesicali inferior" EXACT []
synonym: "arteria vesicalis inferior" RELATED LATIN [Wikipedia:Inferior_vesical_artery]
xref: FMA:18823
xref: http://upload.wikimedia.org/wikipedia/commons/1/13/Inferiorvesical.png
xref: MA:0002079
xref: ncithesaurus:Inferior_Vesical_Artery
xref: SCTID:43210002
is_a: UBERON:0003468 ! ureteric segment of renal artery
is_a: UBERON:0009027 ! vesical artery
relationship: supplies UBERON:0000056 ! ureter
relationship: supplies UBERON:0000998 ! seminal vesicle
relationship: supplies UBERON:0001000 ! vas deferens
relationship: supplies UBERON:0002367 ! prostate gland
relationship: supplies UBERON:0006082 ! fundus of urinary bladder
[Term]
id: UBERON:0001312
name: superior vesical artery
def: "The superior vesical artery supplies numerous branches to the upper part of the bladder. From one of these a slender vessel, the artery to the ductus deferens, takes origin and accompanies the duct in its course to the testis, where it anastomoses with the internal spermatic artery. Other branches supply the ureter. The first part of the superior vesical artery represents the terminal section of the previous portion of the umbilical artery. [WP,unvetted]." [Wikipedia:Superior_vesical_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria vesicalis superior" EXACT []
synonym: "arteriae vesicales superiores" RELATED LATIN [Wikipedia:Superior_vesical_artery]
xref: FMA:18839
xref: http://upload.wikimedia.org/wikipedia/commons/2/20/Internal_iliac_branches.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Internal_iliac_branches.PNG/200px-Internal_iliac_branches.PNG
xref: MA:0002080
xref: ncithesaurus:Superior_Vesical_Artery
xref: SCTID:113268007
is_a: UBERON:0009027 ! vesical artery
[Term]
id: UBERON:0001313
name: iliolumbar artery
def: "The iliolumbar artery is a branch of the posterior trunk of the internal iliac artery. [WP,unvetted]." [Wikipedia:Iliolumbar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria iliolumbalis" RELATED LATIN [Wikipedia:Iliolumbar_artery]
synonym: "ilio-lumbar artery" EXACT []
xref: FMA:18845
xref: http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png
xref: MA:0001976
xref: ncithesaurus:Iliolumbar_Artery
xref: SCTID:113267002
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001314
name: obturator artery
def: "The obturator artery passes antero-inferiorly (forwards and downwards) on the lateral wall of the pelvis, to the upper part of the obturator foramen, and, escaping from the pelvic cavity through the obturator canal, it divides into both an anterior and a posterior branch. [WP,unvetted]." [Wikipedia:Obturator_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria obturatoria" RELATED LATIN [Wikipedia:Obturator_artery]
xref: FMA:18865
xref: http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray547.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6f/Gray547.png/200px-Gray547.png
xref: MA:0002008
xref: ncithesaurus:Obturator_Artery
xref: SCTID:244302006
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001315
name: superior gluteal artery
def: "The superior gluteal artery (gluteal artery) is the largest branch of the internal iliac artery, and appears to be the continuation of the posterior division of that vessel. It is a short artery which runs backward between the lumbosacral trunk and the first sacral nerve, and, passing out of the pelvis above the upper border of the Piriformis, immediately divides into a superficial and a deep branch. Within the pelvis it gives off a few branches to the Iliacus, Piriformis, and Obturator internus, and just previous to quitting that cavity, a nutrient artery which enters the ilium. [WP,unvetted]." [Wikipedia:Superior_gluteal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria glutea superior" RELATED LATIN [Wikipedia:Superior_gluteal_artery]
synonym: "arteria glutealis superior" EXACT []
xref: FMA:18868
xref: http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1244.png/200px-Gray1244.png
xref: MA:0002054
xref: ncithesaurus:Gluteal_Artery
xref: SCTID:181354004
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001015 ! musculature
[Term]
id: UBERON:0001316
name: external iliac vein
def: "The external iliac veins are large veins that connect the femoral veins to the common iliac veins. Their origin is at the inferior margin of the inguinal ligaments and they terminate when they join the internal iliac veins (to form the common iliac veins). Both external iliac veins are accompanied along their course by external iliac arteries. [WP,unvetted]." [Wikipedia:External_iliac_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vena iliaca externa" RELATED LATIN [Wikipedia:External_iliac_vein]
xref: EHDAA2:0000464
xref: FMA:18883
xref: galen:ExternalIliacVein
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Iliac_veins.gif/200px-Iliac_veins.gif
xref: MA:0002144
xref: ncithesaurus:External_Iliac_Vein
xref: OpenCyc:Mx4rwQUYtZwpEbGdrcN5Y29ycA
xref: SCTID:181400000
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001317
name: internal iliac vein
def: "The internal iliac vein (hypogastric vein) begins near the upper part of the greater sciatic foramen, passes upward behind and slightly medial to the hypogastric artery and, at the brim of the pelvis, joins with the external iliac to form the common iliac vein. [WP,unvetted]." [Wikipedia:Internal_iliac_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "v. iliaca interna, v. hypogastrica" RELATED LATIN [Wikipedia:Internal_iliac_vein]
xref: EHDAA2:0000874
xref: FMA:18884
xref: galen:InternalIliacVein
xref: http://upload.wikimedia.org/wikipedia/commons/c/cb/Internaliliacv.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Internaliliacv.png/200px-Internaliliacv.png
xref: MA:0002145
xref: ncithesaurus:Internal_Iliac_Vein
xref: SCTID:181399007
xref: VHOG:0000749
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001318
name: inferior vesical vein
comment: This class was created automatically from a combination of ontologies
xref: FMA:18890
xref: MA:0002264
is_a: UBERON:0002460 ! vesical vein
relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein
[Term]
id: UBERON:0001319
name: vaginal vein
def: "The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]." [Wikipedia:Vaginal_venous_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vagina vein" EXACT [OBOL:automatic]
synonym: "vein of vagina" EXACT [OBOL:automatic]
xref: FMA:18899
xref: http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Gray589.png/200px-Gray589.png
xref: MA:0002251
xref: SCTID:424336009
is_a: UBERON:0001344 ! epithelium of vagina
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0000996
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina
relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein
[Term]
id: UBERON:0001320
name: iliolumbar vein
def: "The iliolumbar vein is the vena comitans of the iliolumbar artery. The obturator nerve crosses superficial to it. A single vein is found more commonly than a double vein. It drains vertebral segments four and five. It is closely related to the ascending lumbar vein. [WP,unvetted]." [Wikipedia:Iliolumbar_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ilio-lumbar vein" EXACT []
synonym: "vena iliolumbalis" RELATED LATIN [Wikipedia:Iliolumbar_vein]
xref: FMA:18902
xref: http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png
xref: MA:0002146
xref: ncithesaurus:Iliolumbar_Vein
xref: SCTID:286793006
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein
[Term]
id: UBERON:0001321
name: obturator vein
def: "The obturator vein begins in the upper portion of the adductor region of the thigh and enters the pelvis through the upper part of the obturator foramen, in the obturator canal. It runs backward and upward on the lateral wall of the pelvis below the obturator artery, and then passes between the ureter and the hypogastric artery, to end in the hypogastric vein. It has an anterior and posterior branch (similar to obturator artery). [WP,unvetted]." [Wikipedia:Obturator_veins]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:18914
xref: http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png
xref: MA:0002183
xref: ncithesaurus:Obturator_Vein
xref: SCTID:20146009
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein
[Term]
id: UBERON:0001322
name: sciatic nerve
def: "The sciatic nerve (also known as the ischiatic nerve) is a large nerve in humans and other animals. It begins in the lower back and runs through the buttock and down the lower limb. It is the longest and widest single nerve in the human body. The sciatic supplies nearly the whole of the skin of the leg, the muscles of the back of the thigh, and those of the leg and foot. In humans, it is derived from spinal nerves L4 through S3. It contains fibres from both the anterior and posterior divisions of the lumbosacral plexus. [WP,edited]." [Wikipedia:Sciatic_nerve]
comment: Taxon notes: mouse sciatic nerve origins predominantly from the third lumbar (L3) and L4 spinal nerves, unlike the L4 and L5 in rats - http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700063/
subset: uberon_slim
synonym: "ischiadic nerve" RELATED [Wikipedia:Sciatic_nerve]
synonym: "ischiatic nerve" RELATED [Wikipedia:Sciatic_nerve]
synonym: "nervus ischiadicus" RELATED LATIN [Wikipedia:Sciatic_nerve]
synonym: "nervus ischiadicus" RELATED [BTO:0001221]
synonym: "nervus sciaticus" RELATED [BTO:0001221]
xref: BTO:0001221
xref: EFO:0001417
xref: EHDAA2:0001779
xref: EHDAA:5659
xref: EMAPA:18577
xref: FMA:19034
xref: GAID:852
xref: http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1244.png/200px-Gray1244.png
xref: MA:0001172
xref: MESH:A.08.800.800.720.450.760
xref: ncithesaurus:Sciatic_Nerve
xref: NIF_GrossAnatomy:birnlex_1133
xref: OpenCyc:Mx4rv7MlDJwpEbGdrcN5Y29ycA
xref: SCTID:181050003
xref: VHOG:0000894
is_a: UBERON:0002003 ! peripheral nerve
relationship: overlaps UBERON:0000978 ! leg
relationship: part_of UBERON:0001815 ! lumbosacral nerve plexus
[Term]
id: UBERON:0001323
name: tibial nerve
def: "The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]." [Wikipedia:Tibial_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "medial popliteal nerve" EXACT []
synonym: "n. tibialis" RELATED LATIN [Wikipedia:Tibial_nerve]
xref: FMA:19035
xref: GAID:854
xref: http://upload.wikimedia.org/wikipedia/commons/1/1a/Gray828.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1a/Gray828.png/200px-Gray828.png
xref: MA:0001173
xref: MESH:A.08.800.800.720.450.760.820
xref: ncithesaurus:Tibial_Nerve
xref: OpenCyc:Mx4rwNya8JwpEbGdrcN5Y29ycA
xref: SCTID:181078002
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003431 ! leg nerve
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001324
name: common fibular nerve
def: "a nerve arising at the terminal division of the sciatic nerve at the popliteal fossa and extending to the neck of the fibula, ultimately innervating the Peroneus muscle[MP]. The common peroneal nerve (common fibular nerve; external popliteal nerve; peroneal nerve), about one-half the size of the tibial nerve, is derived from the dorsal branches of the fourth and fifth lumbar and the first and second sacral nerves. It descends obliquely along the lateral side of the popliteal fossa to the head of the fibula, close to the medial margin of the biceps femoris muscle. It lies between the tendon of the biceps femoris and lateral head of the gastrocnemius muscle, winds around the neck of the fibula, between the peronæus longus and the bone, and divides beneath the muscle into the superficial peroneal nerve (superficial fibular nerve) and deep peroneal nerve (deep fibular nerve). [WP,unvetted]." [MP:0011211, Wikipedia:Common_fibular_nerve]
subset: uberon_slim
synonym: "common peroneal nerve" EXACT []
synonym: "extrernal peroneal nerve" EXACT [MP:0011211]
synonym: "lateral popliteal nerve" EXACT [MP:0011211]
synonym: "n. fibularis communis, n. peroneus communis" RELATED LATIN [Wikipedia:Common_fibular_nerve]
synonym: "nervus peroneus communis" EXACT [FMA:19039, FMA:TA]
synonym: "peroneal nerve" EXACT []
xref: EFO:0003062
xref: FMA:19039
xref: GAID:853
xref: http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray832.png
xref: MA:0001169
xref: MESH:A.08.800.800.720.450.760.640
xref: ncithesaurus:Peroneal_Nerve
xref: OpenCyc:Mx4rvwKexZwpEbGdrcN5Y29ycA
xref: SCTID:181077007
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003431 ! leg nerve
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001325
name: muscle of pelvis
def: "Muscle (organ) which is a part of the pelvis. Examples: levator ani," [FMA:19086]
subset: uberon_slim
synonym: "muscle organ of pelvis" EXACT [OBOL:automatic]
synonym: "pelvic muscle" EXACT [FMA:19086]
synonym: "pelvis muscle" EXACT []
synonym: "pelvis muscle organ" EXACT [OBOL:automatic]
xref: FMA:19086
xref: MA:0000534
is_a: UBERON:0003833 {source="MA"} ! abdominal segment muscle
is_a: UBERON:0005179 ! pelvis organ
relationship: part_of UBERON:0002355
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0001326
name: levator ani muscle
def: "The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]." [Wikipedia:Levator_ani]
comment: Taxon notes: the levator ani muscle acts to lower the tail, in animals that have one
subset: uberon_slim
synonym: "levator ani" EXACT [MA:0002332]
synonym: "musculus levator ani" RELATED LATIN [Wikipedia:Levator_ani]
xref: EMAPA:19165
xref: FMA:19087
xref: http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray404.png/200px-Gray404.png
xref: MA:0002332
xref: ncithesaurus:Levator_Ani
xref: SCTID:181753008
is_a: UBERON:0001325 ! muscle of pelvis
relationship: has_muscle_origin UBERON:0002355 {notes="inner surface of the side of the lesser pelvis", source="dbpedia"} ! pelvis
[Term]
id: UBERON:0001327
name: coccygeus muscle
def: "The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]." [Wikipedia:Coccygeus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "coccygeus" EXACT [MA:0002277]
synonym: "ischiococcygeus" EXACT []
synonym: "musculus coccygeus" RELATED LATIN [Wikipedia:Coccygeus_muscle]
synonym: "musculus ischiococcygeus" EXACT [FMA:19088, FMA:TA]
xref: FMA:19088
xref: http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray404.png/200px-Gray404.png
xref: MA:0002277
is_a: UBERON:0001325 ! muscle of pelvis
relationship: has_muscle_insertion UBERON:0001350 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="dbpedia", notes="Lateral margin of coccyx and related border of sacrum"} ! coccyx
relationship: has_muscle_insertion UBERON:0003690 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="dbpedia", notes="Lateral margin of coccyx and related border of sacrum"} ! sacrum
relationship: has_muscle_nerve UBERON:0009625 {source="dbpedia", notes="sacral nerves: S4 S5 or S3-S4"} ! sacral nerve
relationship: has_muscle_origin UBERON:0009000 {source="dbpedia", notes="Sacrospinous ligament and ischial spine"} ! ischial spine
[Term]
id: UBERON:0001328
name: lobe of prostate
comment: Anatomically, the human prostate gland is located between the base of the bladder and the rectum, and it completely surrounds the proximal urethra (Fig. 1A). It is a single alobular structure with central (CZ), peripheral (PZ) and transitional (TZ) zones. In contrast, the mouse prostate is not merged into one compact anatomical structure. It comprises four paired lobes situated circumferentially around the urethra, immediately caudal to the urinary bladder—namely, anterior (AP), dorsal (DP), lateral (LP), and ventral (VP) prostate (Fig. 1B). Often, the dorsal and the lateral lobes are thought of in combination and referred to as the dorsolateral (DLP) lobe as they share a ductal system. The mouse AP is considered analogous to the human CZ, which is rarely a site of neoplastic transformation in humans. The mouse DLP is considered most similar to the human PZ, which is the zone in which most carcinomas arise (Xue et al. 1997). These analogies, however, are limited as they are based solely on descriptive data and need to be re-evaluated using molecular techniques before the relationship between specific mouse prostate lobes and the human prostate zones is definitively asserted (Abate-Shen & Shen 2000). The mouse VP does not have a human homologue, and the human TZ does not have a murine homologue [PMID:15163300]
synonym: "lobe of prostate gland" EXACT []
synonym: "prostate gland lobe" EXACT []
synonym: "prostatic lobe" EXACT []
xref: BTO:0000548
xref: FMA:19570
xref: MA:0001738
xref: ncithesaurus:Prostate_Gland_Lobe
xref: SCTID:279692004
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0001329
name: prostate gland anterior lobe
def: "the prostate lobe that appears as a thin tubular structure, attached to the lesser curvature of the paired seminal vesicles." [MP:0001163]
comment: comment: todo - check - see comments from PMID:15163300
synonym: "anterior lobe of prostate" EXACT [FMA:19574]
synonym: "anterior lobe of prostate gland" EXACT []
synonym: "commissura prostatae" EXACT [FMA:19574, FMA:TA]
synonym: "commissure of prostate" EXACT []
synonym: "isthmus of prostate" EXACT []
synonym: "isthmus of prostate gland" EXACT []
synonym: "isthmus prostatae" EXACT [FMA:19574, FMA:TA]
synonym: "prostate gland anterior lobe" EXACT []
synonym: "prostatic isthmus" EXACT []
xref: BTO:0003158
xref: FMA:19574
xref: MA:0002422
xref: SCTID:279693009
is_a: UBERON:0001328 ! lobe of prostate
[Term]
id: UBERON:0001330
name: pampiniform plexus
def: "The pampiniform plexus is a network of many small veins found in the human male spermatic cord. It is formed by the union of multiple spermatic veins from the back of the testis and tributaries from the epididymis. The veins of the plexus ascend along the cord in front of the ductus deferens. Below the subcutaneous inguinal ring they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins. These again unite to form a single vein, the testicular vein, which opens on the right side into the inferior vena cava, at an acute angle, and on the left side into the left renal vein, at a right angle. The pampinoform plexus forms the chief mass of the cord. In addition to its function in venous return from the testes, the pampiniform plexus also plays a role in the temperature regulation of the testes. It acts as a heat exchanger, cooling blood in adjacent arteries. An abnormal enlargement of the pampiniform plexus is a medical condition called varicocele. [WP,unvetted]." [Wikipedia:Pampiniform_venous_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pampiniform venous plexus" EXACT []
synonym: "plexus of veins of fascia of prostate" EXACT []
synonym: "plexus venosus pampiniformis" EXACT [FMA:19607, FMA:TA]
synonym: "venous plexus of fascia of prostate" EXACT []
synonym: "venous plexus of fascia of prostate gland" EXACT []
xref: FMA:19607
xref: http://upload.wikimedia.org/wikipedia/commons/a/af/Gray1147.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray1147.png/200px-Gray1147.png
xref: MA:0001866
xref: SCTID:279661001
is_a: UBERON:0001593 ! venous plexus
[Term]
id: UBERON:0001331
name: skin of penis
def: "A zone of skin that is part of a penis [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "penile skin" EXACT []
synonym: "penis skin" EXACT []
synonym: "penis zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of penis" EXACT [OBOL:automatic]
xref: FMA:19638
xref: MA:0002727
xref: SCTID:35900000
is_a: UBERON:0000014 ! zone of skin
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000989
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000989 ! penis
relationship: continuous_with UBERON:0001085 ! skin of trunk
relationship: part_of UBERON:0000989 ! penis
[Term]
id: UBERON:0001332
name: prepuce of penis
def: "In male human anatomy, the foreskin is a retractable double-layered fold of skin and mucous membrane that covers the glans penis and protects the urinary meatus when the penis is not erect. It is also described as the prepuce, a technically broader term that also includes the clitoral hood in women, to which the foreskin is embryonically homologous. [WP,unvetted]." [Wikipedia:Foreskin]
subset: uberon_slim
synonym: "foreskin" RELATED [FMA:19639]
synonym: "penile prepuce" EXACT [FMA:19639]
synonym: "prepuce" BROAD [MA:0000407, Wikipedia:Foreskin]
synonym: "prepuce of male" EXACT [EMAPA:18989]
synonym: "prepucium, præputium" RELATED LATIN [Wikipedia:Foreskin]
synonym: "preputium" BROAD [HP:0100587]
xref: BTO:0001113
xref: EFO:0001664
xref: EMAPA:18989
xref: EV:0100109
xref: FMA:19639
xref: http://upload.wikimedia.org/wikipedia/commons/e/e6/Foreskin_CloseupV2.jpg
xref: http://upload.wikimedia.org/wikipedia/en/thumb/c/cc/Foreskin2.jpg/200px-Foreskin2.jpg
xref: MA:0000407
xref: ncithesaurus:Male_Prepuce
xref: OpenCyc:Mx4rvVjlTZwpEbGdrcN5Y29ycA
xref: SCTID:181426005
is_a: UBERON:0011374 ! prepuce
relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital ridge
relationship: part_of UBERON:0000989 ! penis
[Term]
id: UBERON:0001333
name: male urethra
def: "In anatomy, the urethra (from Greek οὐρήθρα - ourethra) is a tube which connects the urinary bladder to the outside of the body. The urethra has an excretory function in both sexes to pass urine to the outside, and also a reproductive function in the male, as a passage for semen. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [WP,unvetted]." [Wikipedia:Male_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0004089
xref: EMAPA:18692
xref: FMA:19668
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: MA:0002640
xref: ncithesaurus:Male_Urethra
xref: SCTID:264085007
is_a: UBERON:0000057 ! urethra
relationship: part_of UBERON:0003101
intersection_of: UBERON:0000057 ! urethra
intersection_of: part_of UBERON:0003101 ! male organism
relationship: part_of UBERON:0003101 ! male organism
[Term]
id: UBERON:0001334
name: female urethra
def: "In anatomy, the urethra (from Greek οὐρήθρα - ourethra) is a tube which connects the urinary bladder to the outside of the body. The urethra has an excretory function in both sexes to pass urine to the outside, and also a reproductive function in the male, as a passage for semen. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [WP,unvetted]." [Wikipedia:Female_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0004088
xref: EMAPA:28747
xref: FMA:19669
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: MA:0002637
xref: ncithesaurus:Female_Urethra
xref: SCTID:264469008
is_a: UBERON:0000057 ! urethra
relationship: part_of UBERON:0003100
intersection_of: UBERON:0000057 ! urethra
intersection_of: part_of UBERON:0003100 ! female organism
relationship: part_of UBERON:0003100 ! female organism
[Term]
id: UBERON:0001335
name: prostatic urethra
def: "The prostatic urethra, the widest and most dilatable part of the urethra canal, is about 3 cm. long. It runs almost vertically through the prostate from its base to its apex, lying nearer its anterior than its posterior surface; the form of the canal is spindle-shaped, being wider in the middle than at either extremity, and narrowest below, where it joins the membranous portion. A transverse section of the canal as it lies in the prostate is horse-shoe-shaped, with the convexity directed forward. [WP,unvetted]." [Wikipedia:Prostatic_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pars prostatica urethrae" RELATED LATIN [Wikipedia:Prostatic_urethra]
synonym: "pars prostatica urethrae" RELATED [BTO:0003163]
synonym: "prostatic part of urethra" EXACT []
xref: BTO:0003163
xref: EMAPA:30942
xref: FMA:19673
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png
xref: MA:0002646
xref: ncithesaurus:Prostatic_Portion_of_the_Male_Urethra
xref: SCTID:279434009
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001333 ! male urethra
[Term]
id: UBERON:0001336
name: membranous urethra
def: "The intermediate part of male urethra (membranous portion) is the shortest, least dilatable, and, with the exception of the external orifice, the narrowest part of the canal. It extends downward and forward, with a slight anterior concavity, between the apex of the prostate and the bulb of the urethra, perforating the urogenital diaphragm about 2.5 cm. below and behind the pubic symphysis. The hinder part of the urethral bulb lies in apposition with the inferior fascia of the urogenital diaphragm, but its upper portion diverges somewhat from this fascia: the anterior wall of the membranous urethra is thus prolonged for a short distance in front of the urogenital diaphragm; it measures about 2 cm. in length, while the posterior wall which is between the two fasciæ of the diaphragm is only 1.25 cm. long. The membranous portion of the urethra is completely surrounded by the fibers of the Sphincter urethrae membranaceae. In front of it the deep dorsal vein of the penis enters the pelvis between the transverse ligament of the pelvis and the arcuate pubic ligament; on either side near its termination are the bulbourethral glands. [WP,unvetted]." [Wikipedia:Membranous_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intermediate part of urethra" EXACT []
synonym: "intermediate urethra" EXACT []
synonym: "membranous part of urethra" EXACT []
synonym: "pars intermedia urethrae" EXACT [FMA:19674, FMA:TA]
synonym: "pars intermedia urethrae masculinae, pars membranacea urethrae masculinae" RELATED LATIN [Wikipedia:Membranous_urethra]
synonym: "pars membranacea (urethrae)" EXACT []
xref: FMA:19674
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png
xref: MA:0002647
xref: ncithesaurus:Membranous_Urethra
xref: SCTID:263343009
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001008 ! excretory system
relationship: part_of UBERON:0001333 ! male urethra
[Term]
id: UBERON:0001337
name: spongiose part of urethra
def: "The spongy urethra (cavernous portion of urethra, penile urethra) is the longest part of the male urethra, and is contained in the corpus spongiosum urethraeæ. It is about 15 cm long, and extends from the termination of the membranous portion to the external urethral orifice. Commencing below the inferior fascia of the urogenital diaphragm it passes forward and upward to the front of the symphysis pubis; and then, in the flaccid condition of the penis, it bends downward and forward. It is narrow, and of uniform size in the body of the penis, measuring about 6 mm in diameter; it is dilated behind, within the bulb, and again anteriorly within the glans penis, where it forms the fossa navicularis urethrae. [WP,unvetted]." [Wikipedia:Penile_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pars spongiosa" EXACT [FMA:19675, FMA:TA]
synonym: "penile urethra" EXACT []
synonym: "spongiose urethra" EXACT []
synonym: "spongy urethra (male)" EXACT []
xref: BTO:0004089
xref: EMAPA:30944
xref: FMA:19675
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png
xref: MA:0002643
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001333 ! male urethra
[Term]
id: UBERON:0001338
name: urethral gland
subset: organ_slim
subset: uberon_slim
synonym: "gland of urethra" EXACT [OBOL:automatic]
synonym: "urethra gland" EXACT []
synonym: "urethra gland (male or female)" EXACT []
xref: FMA:19683
xref: MA:0001688
xref: SCTID:279477005
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002365 ! exocrine gland
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000057
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001339
name: ischiocavernosus muscle
def: "The ischiocavernosus muscle is a muscle just below the surface of the perineum, present in both men and women. [WP,unvetted]." [Wikipedia:Ischiocavernosus_muscle]
subset: organ_slim
subset: uberon_slim
synonym: "erector penis" RELATED [Wikipedia:Ischiocavernosus_muscle]
synonym: "ischiocavernosi" RELATED [Wikipedia:Ischiocavernosus_muscle]
synonym: "ischiocavernosus" RELATED [Wikipedia:Ischiocavernosus_muscle]
synonym: "ischiocavernous muscle" RELATED [Wikipedia:Ischiocavernosus_muscle]
synonym: "ishiocavernosus" RELATED [Wikipedia:Ischiocavernosus_muscle]
synonym: "ishiocavernosus muscle" RELATED [Wikipedia:Ischiocavernosus_muscle]
synonym: "musculus ishiocavernosus" EXACT LATIN [Wikipedia:Ischiocavernosus_muscle]
xref: FMA:19730
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Ischiocavernosus-female.png/200px-Ischiocavernosus-female.png
xref: MA:0002330
xref: ncithesaurus:Ischiocavernosus
xref: SCTID:244975004
is_a: UBERON:0002379 ! perineal muscle
relationship: has_muscle_origin UBERON:0001274 ! ischium
[Term]
id: UBERON:0001340
name: dorsal artery of penis
def: "The Dorsal Artery of the Penis ascends between the crus penis and the pubic symphysis, and, piercing the inferior fascia of the urogenital diaphragm, passes between the two layers of the suspensory ligament of the penis, and runs forward on the dorsum of the penis to the glans, where it divides into two branches, which supply the glans and prepuce. On the penis, it lies between the dorsal nerve and deep dorsal vein, the former being on its lateral side. It supplies the integument and fibrous sheath of the corpus cavernosum penis, sending branches through the sheath to anastomose with the deep artery of the penis. [WP,unvetted]." [Wikipedia:Dorsal_artery_of_penis]
subset: uberon_slim
synonym: "arteria dorsalis penis" EXACT [BTO:0005088]
synonym: "dorsal artery of the penis" RELATED [BTO:0005088]
synonym: "dorsal penile artery" EXACT [FMA:19795]
synonym: "dorsal penis artery" EXACT [MA:0001946]
xref: BTO:0005088
xref: FMA:19795
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Gray1155.png/200px-Gray1155.png
xref: MA:0001946
xref: SCTID:244294001
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0004803 ! penis epithelium
relationship: branch_of UBERON:0007315 {source="FMA"} ! internal pudendal artery
relationship: part_of UBERON:0000989 {source="FMA"} ! penis
relationship: part_of UBERON:0008320 {source="BTO"} ! common penile artery
[Term]
id: UBERON:0001341
name: lesser sac
def: "The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). In mammals, it is not uncommon for the lesser sac to contain considerable amounts of fat. In human anatomy, the wall of the stomach, pancreas and splenic artery are a part of the wall of the lesser sac. If these structures rupture they may leak into the lesser sac. For the stomach, which lies anterior to the omental bursa, the rupture must be on the posterior side; if it were anteriorly located, the leak would collect in the greater sac. The lesser sac is embryologically formed from an infolding of the greater omentum. The open end of the infolding, known as the epiploic foramen, is usually proximal to the stomach. [WP,unvetted]." [Wikipedia:Lesser_sac]
comment: AO notes: classified as a cavity in EHDAA2, organ segment in FMA. We hedge and use a union
subset: uberon_slim
synonym: "bursa omentalis" EXACT [FMA:19800, FMA:TA]
synonym: "omental bursa" EXACT []
xref: EHDAA2:0001296
xref: EHDAA2:0004554
xref: EHDAA:2335
xref: EMAPA:16889
xref: EMAPA:18458
xref: FMA:19800
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Peritoneum.svg/200px-Peritoneum.svg.png
xref: MA:0000445
xref: ncithesaurus:Omental_Bursa
xref: VHOG:0000458
is_a: UBERON:0004458 ! body cavity or lining
relationship: part_of UBERON:0001179 ! peritoneal cavity
[Term]
id: UBERON:0001342
name: mesovarium
def: "The mesentery that suspends the ovary from the dorsal wall of the coelom[VHOG]. The mesovarium is the portion of the broad ligament of the uterus that covers the ovaries. At first the mesonephros and genital ridge are suspended by a common mesentery, but as the embryo grows the genital ridge gradually becomes pinched off from the mesonephros, with which it is at first continuous, though it still remains connected to the remnant of this body by a fold of peritoneum. In the male this is the mesorchium, and in the female, this is the mesovarium. [WP,unvetted]." [VHOG:0001566, Wikipedia:Mesovarium]
subset: uberon_slim
subset: vertebrate_core
synonym: "mesovarian ligament" RELATED []
xref: AAO:0010531
xref: EMAPA:17961
xref: FMA:19815
xref: http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray1111.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e7/Gray1111.png/200px-Gray1111.png
xref: ncithesaurus:Mesovarian_Ligament
xref: SCTID:279914000
xref: TAO:0000333
xref: VHOG:0001566
xref: ZFA:0000333
property_value: UBPROP:0000001 "Anatomical structure consisting of a membrane which suspends the ovaries from the mesial side of the kidney.[AAO]" xsd:string
is_a: UBERON:0002095 ! mesentery
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000992 ! female gonad
relationship: part_of UBERON:0002095 ! mesentery
[Term]
id: UBERON:0001343
name: seminiferous tubule of testis
def: "Seminiferous tubules are located in the testicles, and are the specific location of meiosis, and the subsequent creation of gametes, namely spermatozoa. The epithelium of the tubule consists of sustentacular or Sertoli cells, which are tall, columnar type cells that line the tubule. In between the Sertoli cells are spermatogenic cells, which differentiate through meiosis to sperm cells. There are two types: convoluted and straight. convuluted towards the lateral side and straight as the tubule comes medially to form ducts which will exit the testis. [WP,unvetted]." [Wikipedia:Seminiferous_tubule]
subset: uberon_slim
synonym: "seminiferous cord" EXACT [EMAPA:18685]
synonym: "seminiferous tubule" EXACT []
synonym: "testis - seminiferous tubule" EXACT []
synonym: "tubuli seminiferi" EXACT []
synonym: "tubuli seminiferi" RELATED LATIN [Wikipedia:Seminiferous_tubule]
xref: AAO:0010399
xref: BTO:0001235
xref: EFO:0001404
xref: EMAPA:18685
xref: EMAPA:31476
xref: EV:0100380
xref: FMA:19825
xref: GAID:400
xref: http://upload.wikimedia.org/wikipedia/commons/4/49/Seminiferous_tubule_and_sperm_low_mag.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6a/Gray1145.png/200px-Gray1145.png
xref: MA:0000412
xref: MAT:0000503
xref: MESH:A.05.360.444.849.700
xref: ncithesaurus:Seminiferous_Cord
xref: ncithesaurus:Seminiferous_Tubule
xref: SCTID:279614002
xref: VHOG:0001363
xref: XAO:0003088
property_value: UBPROP:0000001 "Any of the coiled tubules located in the testes in which spermatozoa are produced.[AAO]" xsd:string
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: channels_into UBERON:0003959 ! rete testis
relationship: develops_from UBERON:0005297 {source="Wikipedia"} ! testis sex cord
relationship: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0001344
name: epithelium of vagina
def: "the epithelial layer of the vagina." [MP:0001140]
comment: FMA: nonkeratinizing stratified squamous epithelium; BTO: Vaginal epithelium is stratified squamous epithelium having a thickness of 15-200 microns; MA has single subclass (squamous)
synonym: "epithelial tissue of vagina" EXACT [OBOL:automatic]
synonym: "epithelium, vaginal" RELATED [BTO:0000422]
synonym: "vagina epithelial tissue" EXACT [OBOL:automatic]
synonym: "vagina epithelium" EXACT []
synonym: "vaginal epithelium" EXACT []
xref: BTO:0000422
xref: EMAPA:30991
xref: FMA:19978
xref: MA:0001730
xref: ncithesaurus:Vaginal_Epithelium
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000486 ! multilaminar epithelium
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0000996
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0001345
name: fornix
def: "This class was obsoleted." [Wikipedia:Vaginal_fornix_of_brain]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
is_obsolete: true
consider: UBERON:0000051
consider: UBERON:0000052
[Term]
id: UBERON:0001346
name: vaginal hymen
def: "The hymen, or the vaginal corona, is a fold of mucous membrane that surrounds or partially covers the external vaginal opening. It forms part of the vulva, or external genitalia[WP]." [Wikipedia:Hymen]
synonym: "hymen" BROAD [MESH:A.05.360.319.779.479]
synonym: "hymen of vagina" EXACT [FMA:20005]
synonym: "hymen vaginae" EXACT []
synonym: "hymen vaginae" RELATED LATIN [Wikipedia:Hymen]
synonym: "vaginal corona" RELATED [Wikipedia:Hymen]
xref: FMA:20005
xref: http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png
xref: MA:0002465
xref: MESH:A.05.360.319.779.479
xref: ncithesaurus:Hymen
xref: SCTID:245473005
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000996 {source="FMA"} ! vagina
[Term]
id: UBERON:0001347
name: white adipose tissue
def: "Adipose tissue, cells of which contain a single large lipid droplet.[FMA]" [FMA:FMA, Wikipedia:White_adipose_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adipocytus unigutturalis" EXACT []
synonym: "textus adiposus albus" EXACT []
synonym: "textus adiposus albus" RELATED LATIN [Wikipedia:White_adipose_tissue]
synonym: "unilocular adipose tissue" EXACT []
synonym: "white fat" EXACT []
xref: BTO:0001456
xref: EFO:0000813
xref: FMA:20117
xref: MA:0000058
xref: MAT:0000199
xref: MIAA:0000199
xref: ncithesaurus:White_Adipose_Tissue
is_a: UBERON:0001013 ! adipose tissue
[Term]
id: UBERON:0001348
name: brown adipose tissue
def: "Adipose tissue, cells of which contain multiple small lipid droplets.[FMA]" [FMA:FMA, Wikipedia:Brown_adipose_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adipocytus multigutturalis" EXACT []
synonym: "brown fat" EXACT []
synonym: "multilocular adipose tissue" EXACT []
synonym: "textus adiposus fuscus" EXACT []
synonym: "textus adiposus fuscus" RELATED LATIN [Wikipedia:Brown_adipose_tissue]
xref: BTO:0000156
xref: EFO:0000812
xref: EMAPA:19209
xref: FMA:20118
xref: GAID:921
xref: http://upload.wikimedia.org/wikipedia/commons/6/69/Brownfat_PETCT.jpg
xref: MA:0000057
xref: MAT:0000198
xref: MESH:A.10.165.114.322
xref: MIAA:0000198
xref: ncithesaurus:Brown_Adipose_Tissue
xref: SCTID:15965003
is_a: UBERON:0001013 ! adipose tissue
[Term]
id: UBERON:0001349
name: vestibule
def: "Anatomical cavity that connects an organ cavity, organ cavity subdivision or cavity of body part subdivision to the exterior, completely or partially surrounded by organs or organ parts that are lined by epithelium. Examples: preputial cavity, vestibule of vagina.[FMA]" [FMA:20192, FMA:FMA, Wikipedia:Vestibule_(disambiguation)#Anatomy]
subset: uberon_slim
xref: FMA:20192
is_a: UBERON:0002553 ! anatomical cavity
disjoint_from: UBERON:0005236 ! osseus labyrinth vestibule
[Term]
id: UBERON:0001350
name: coccyx
def: "A collection of caudal vertebrae in the coccygeal region - may be fused[cjm]." [UBERON:cjm, Wikipedia:Coccyx]
comment: In MA the subclass hierarchy is cocc V is_a caud V is_a tail bone. Taxon notes: In humans: The coccyx, commonly referred to as the tailbone, is the final segment of the human vertebral column. Comprising three to five separate or fused vertebrae (the coccygeal vertebrae) below the sacrum, it is attached to the sacrum by a fibrocartilaginous joint, the sacrococcygeal symphysis, which permits limited movement between the sacrum and the coccyx. The term coccyx comes originally from the Greek language and means 'cuckoo', referring to the curved shape of a cuckoo's beak when viewed from the side. [WP,unvetted].
subset: organ_slim
subset: uberon_slim
synonym: "coccygeal skeleton" EXACT [EHDAA2:0000259]
synonym: "coccygeal vertebrae I-IV" EXACT [FMA:20229]
synonym: "coccyx [coccygeal vertebrae i-iv]" EXACT [FMA:20229]
synonym: "coccyx [vertebrae coccygeae i-iv]" EXACT [FMA:20229, FMA:TA]
synonym: "os coccygis" EXACT [FMA:20229, FMA:TA]
synonym: "os coccygis" RELATED LATIN [Wikipedia:Coccyx]
synonym: "tailbone" RELATED SENSU [FMA:20229]
xref: AAO:0000731
xref: EHDAA2:0000259
xref: FMA:20229
xref: GAID:239
xref: galen:Coccyx
xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Gray100.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Gray100.png/200px-Gray100.png
xref: MESH:A.02.835.232.834.229
xref: ncithesaurus:Coccyx
xref: OpenCyc:Mx4rv1XqHJwpEbGdrcN5Y29ycA
xref: SCTID:182028002
property_value: "has_fused_element" UBERON:0006070
property_value: UBPROP:0000001 "Small, bony element consisting of several fused, rudimentary caudal vertebrae; near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle.[AAO]" xsd:string
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: anteriorly_connected_to UBERON:0003690 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! sacrum
relationship: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001270 {source="FMA"} ! bony pelvis
[Term]
id: UBERON:0001351
name: lacrimal sac
def: "The lacrimal sac is the upper dilated end of the nasolacrimal duct, and is lodged in a deep groove formed by the lacrimal bone and frontal process of the maxilla. It connects the lacrimal canaliculi, which drain tears from the eye's surface, and the nasolacrimal duct, which conveys this fluid into the nasal cavity. This is mainly for high amounts of tears, in which the lacrimal sac pumps inward and outward driven by the orbicularis muscle during blinking. It is oval in form and measures from 12 to 15 mm. in length; its upper end is closed and rounded; its lower is continued into the nasolacrimal duct. Its superficial surface is covered by a fibrous expansion derived from the medial palpebral ligament, and its deep surface is crossed by the lacrimal part of the Orbicularis oculi, which is attached to the crest on the lacrimal bone. Like the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, with surrounding connective tissue. [WP,unvetted]." [Wikipedia:Lacrimal_sac]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "saccus lacrimalis" RELATED LATIN [Wikipedia:Lacrimal_sac]
xref: FMA:20289
xref: http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png
xref: MA:0001298
xref: ncithesaurus:Lacrimal_Sac
xref: SCTID:362534009
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001850 ! lacrimal duct
[Term]
id: UBERON:0001352
name: external acoustic meatus
def: "A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter." [Wikipedia:External_acoustic_meatus]
comment: AO notes: subdivision of head in FMA. Editor note: consider revisiting superclass after refinement of CARO/EAO, conduit may not be quite correct. Development notes: tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane[PMID 11237469]
subset: uberon_slim
synonym: "auditory canal" EXACT []
synonym: "auditory meatus" RELATED [EHDAA2:0000460]
synonym: "ear canal" EXACT [Wikipedia:Ear_canal]
synonym: "external acoustic tube" EXACT [FMA:61734]
synonym: "external auditory canal" EXACT []
synonym: "external auditory meatus" RELATED []
synonym: "external auditory tube" EXACT [FMA:61734]
xref: EHDAA2:0000460
xref: EHDAA:8975
xref: EMAPA:17588
xref: EV:0100356
xref: FMA:61734
xref: GAID:864
xref: galen:ExternalAuditoryMeatus
xref: MA:0000260
xref: MESH:A.09.246.272.396
xref: ncithesaurus:External_Acoustic_Meatus
xref: OpenCyc:Mx4rvli-nZwpEbGdrcN5Y29ycA
xref: SCTID:181178004
xref: VHOG:0000977
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0005872 {source="PMID:11237469"} ! 1st arch pharyngeal cleft
relationship: part_of UBERON:0001691 {source="FMA"} ! external ear
relationship: surrounded_by UBERON:0010065 {source="EHDAA2"} ! auditory meatus epithelium
[Term]
id: UBERON:0001353
name: anal region
subset: uberon_slim
xref: EFO:0000847
xref: EHDAA2:0000122
xref: EHDAA:2931
xref: EMAPA:16831
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray408.png/200px-Gray408.png
xref: MA:0000329
xref: MAT:0000042
xref: MIAA:0000042
xref: ncithesaurus:Anal_Region
xref: SCTID:362680001
xref: VHOG:0000395
xref: WBbt:0006919
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0000931 {evidence="definitional"} ! proctodeum
relationship: part_of UBERON:0006866 ! terminal part of digestive tract
[Term]
id: UBERON:0001354
name: inferior epigastric artery
def: "In human anatomy, inferior epigastric artery refers to the artery that arises from the external iliac artery and anastomoses with the superior epigastric artery. Along its course, it is accompanied by a similarly named vein, the inferior epigastric vein. [WP,unvetted]." [Wikipedia:Inferior_epigastric_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria epigastrica inferior" RELATED LATIN [Wikipedia:Inferior_epigastric_artery]
xref: EMAPA:18751
xref: FMA:20686
xref: http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray547.png
xref: MA:0001978
xref: ncithesaurus:Inferior_Epigastric_Artery
xref: OpenCyc:Mx4rdBvQc6gOEdudWQACs5b6Bw
xref: SCTID:244288009
is_a: UBERON:0003520 ! pelvis blood vessel
is_a: UBERON:0004573 ! systemic artery
relationship: part_of UBERON:0001308 ! external iliac artery
[Term]
id: UBERON:0001355
name: deep femoral artery
def: "The profunda femoris artery (also known as the deep femoral artery, or the deep artery of the thigh) is a branch of the femoral artery that, as its name suggests, travels more deeply (posteriorly) than the rest of the femoral artery. [WP,unvetted]." [Wikipedia:Deep_femoral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria profunda femoris" EXACT []
synonym: "profunda femoris artery" EXACT []
xref: FMA:20741
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray548.png/200px-Gray548.png
xref: MA:0002027
xref: ncithesaurus:Deep_Femoral_Artery
xref: SCTID:181348000
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001356
name: medial circumflex femoral artery
def: "The medial circumflex femoral artery (internal circumflex artery, medial femoral circumflex artery) is an artery in the upper thigh that helps supply blood to the neck of the femur. [WP,unvetted]." [Wikipedia:Medial_circumflex_femoral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria circumflexa femoris medialis" RELATED LATIN [Wikipedia:Medial_circumflex_femoral_artery]
synonym: "medial femoral circumflex artery" EXACT []
xref: FMA:20799
xref: http://upload.wikimedia.org/wikipedia/commons/c/c5/Circumflex_femoral_arteries.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Circumflex_femoral_arteries.png/200px-Circumflex_femoral_arteries.png
xref: MA:0001996
xref: SCTID:244326008
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001357
name: inferior rectal artery
def: "The inferior rectal artery (inferior hemorrhoidal artery) is an artery that supplies blood to the lower half of the anal canal. [WP,unvetted]." [Wikipedia:Inferior_rectal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria rectalis inferior, arteria hæmorrhoidalis inferior" RELATED LATIN [Wikipedia:Inferior_rectal_artery]
synonym: "inferior hemorrhoidal artery" EXACT []
xref: FMA:20824
xref: http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray542.png/200px-Gray542.png
xref: MA:0001979
xref: ncithesaurus:Inferior_Rectal_Artery
xref: SCTID:244304007
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001358
name: perineal artery
def: "The perineal artery (superficial perineal artery) arises from the internal pudendal artery, and turns upward, crossing either over or under the Transversus perinæi superficialis, and runs forward, parallel to the pubic arch, in the interspace between the Bulbocavernosus and Ischiocavernosus, both of which it supplies, and finally divides into several posterior scrotal branches which are distributed to the skin and dartos tunic of the scrotum. As it crosses the Transversus perinæi superficialis it gives off the transverse perineal artery which runs transversely on the cutaneous surface of the muscle, and anastomoses with the corresponding vessel of the opposite side and with the perineal and inferior hemorrhoidal arteries. It supplies the Transversus perinæi superficialis and the structures between the anus and the urethral bulb. [WP,unvetted]." [Wikipedia:Perineal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria perinei" RELATED LATIN [Wikipedia:Perineal_artery]
xref: FMA:20836
xref: http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray542.png/200px-Gray542.png
xref: MA:0002017
xref: ncithesaurus:Perineal_Artery
xref: SCTID:244303001
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001359
name: cerebrospinal fluid
def: "a clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord." [Wikipedia:Cerebrospinal_fluid]
comment: AO notes: the FMA def states that this is subarachnoid spaces only. ZFA def states subarachnoid spaces and brain ventricles, but not SC (and has part_of to brain). Circulation: It circulates from the lateral ventricles to the foramen of Monro (Interventricular foramen), third ventricle, aqueduct of Sylvius (Cerebral aqueduct), fourth ventricle, foramen of Magendie (Median aperture) and foramina of Luschka (Lateral apertures), subarachnoid space over brain and spinal cord. It should be noted that the CSF moves in a pulsatile manner throughout the CSF system with nearly zero net flow. CSF is reabsorbed into venous sinus blood via arachnoid granulations.
subset: uberon_slim
subset: vertebrate_core
synonym: "cerebral spinal fluid" EXACT [ZFA:0001626]
synonym: "CSF" EXACT []
synonym: "liquor cerebrospinalis" RELATED [Wikipedia:Cerebrospinal_fluid]
synonym: "spinal fluid" RELATED [BTO:0000237]
xref: BTO:0000237
xref: EFO:0000329
xref: ENVO:02000029
xref: EV:0100311
xref: FMA:20935
xref: GAID:1181
xref: MA:0002503
xref: MAT:0000499
xref: MESH:A.12.207.268
xref: ncithesaurus:Cerebrospinal_Fluid
xref: NIF_GrossAnatomy:birnlex_1798
xref: TAO:0002184
xref: VHOG:0001278
xref: ZFA:0001626
property_value: UBPROP:0000001 "Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain.[TAO]" xsd:string
is_a: UBERON:0007779 {source="FMA"} ! transudate
[Term]
id: UBERON:0001360
name: deep circumflex iliac vein
def: "The deep circumflex iliac vein is formed by the union of the venæ comitantes of the deep iliac circumflex artery, and joins the external iliac vein about 2 cm. above the inguinal ligament. It also receives small tributary branches from the thoracoepigastric vein [WP,unvetted]." [Wikipedia:Deep_circumflex_iliac_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "deep iliac circumflex vein" EXACT []
synonym: "vena circumflexa iliaca profunda" EXACT []
synonym: "vena circumflexa ilium profunda" RELATED LATIN [Wikipedia:Deep_circumflex_iliac_vein]
xref: FMA:21182
xref: http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png
xref: MA:0002099
xref: SCTID:11653007
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001361
name: femoral vein
def: "In the human body, the femoral vein is a blood vessel that accompanies the femoral artery in the femoral sheath. It begins at the adductor canal (also known as Hunter's canal) and is a continuation of the popliteal vein. It ends at the inferior margin of the inguinal ligament, where it becomes the external iliac vein. [WP,unvetted]." [Wikipedia:Femoral_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vena femoralis" RELATED LATIN [Wikipedia:Femoral_vein]
xref: AAO:0010237
xref: EMAPA:17876
xref: FMA:21185
xref: GAID:533
xref: galen:FemoralVein
xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Femoral_triangle.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Femoral_triangle.gif/200px-Femoral_triangle.gif
xref: MA:0002118
xref: MESH:A.07.231.908.314
xref: ncithesaurus:Femoral_Vein
xref: OpenCyc:Mx4rwFXTLJwpEbGdrcN5Y29ycA
xref: SCTID:362071002
property_value: UBPROP:0000001 "Either of the primary veins in the hindlimbs which collect blood from the hindlimb region.[AAO]" xsd:string
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001362
name: perineal vein
comment: This class was created automatically from a combination of ontologies
xref: FMA:21246
xref: MA:0002193
xref: SCTID:312507009
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein
[Term]
id: UBERON:0001363
name: great saphenous vein
def: "The great saphenous vein (GSV), also greater saphenous vein, is the large (subcutaneous) superficial vein of the leg and thigh. The terms 'safaina' (Greek) and 'el safin' (Arabic) have both been claimed as the origin for the word 'saphenous'. [WP,unvetted]." [Wikipedia:Great_saphenous_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "greater saphenous vein" EXACT []
synonym: "large saphenous vein" RELATED [BTO:0003271]
synonym: "long saphenous vein" EXACT []
synonym: "vena saphena magna" RELATED LATIN [Wikipedia:Great_saphenous_vein]
xref: BTO:0003271
xref: FMA:21376
xref: galen:GreaterSaphenousVein
xref: galen:GreatSaphenousVein
xref: http://upload.wikimedia.org/wikipedia/commons/5/51/Great_saphenous_vein.png
xref: MA:0002216
xref: ncithesaurus:Long_Saphenous_Vein
xref: SCTID:181402008
is_a: UBERON:0007318 ! saphenous vein
relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein
[Term]
id: UBERON:0001364
name: circumpennate
synonym: "radial" EXACT []
synonym: "radialis" EXACT [FMA:21431, FMA:TA]
synonym: "radials" RELATED []
xref: OpenCyc:Mx4rvVjBSZwpEbGdrcN5Y29ycA
is_obsolete: true
[Term]
id: UBERON:0001365
name: sacro-iliac joint
def: "the joint in the bony pelvis between the sacrum and the ilium of the pelvis, which are joined by strong ligaments. In humans, the sacrum supports the spine and is supported in turn by an ilium on each side." [Wikipedia:Sacroiliac_joint]
subset: uberon_slim
synonym: "articulatio sacro-iliaca" EXACT []
synonym: "sacroiliac joint" EXACT []
xref: EMAPA:19300
xref: FMA:21440
xref: GAID:268
xref: http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray319.png
xref: MA:0001506
xref: MESH:A.02.835.583.707
xref: ncithesaurus:Sacroiliac_Joint
xref: SCTID:182199004
is_a: UBERON:0011107 {source="FMA"} ! synovial joint of pelvic girdle
relationship: connects UBERON:0001273
relationship: connects UBERON:0003690
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001273 ! ilium
intersection_of: connects UBERON:0003690 ! sacrum
relationship: connects UBERON:0001273 ! ilium
relationship: connects UBERON:0003690 ! sacrum
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0001366
name: parietal peritoneum
alt_id: UBERON:0004459
def: "The peritoneum that lines the walls of the peritoneal cavity." [Wikipedia:Parietal_peritoneum, ZFIN:curator]
comment: fix coordinated with ZFA
subset: uberon_slim
subset: vertebrate_core
synonym: "peritoneal cavity lining" EXACT [MA:0000449]
xref: AAO:0010816
xref: FMA:21451
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1040.png/200px-Gray1040.png
xref: MA:0000449
xref: SCTID:362700006
xref: TAO:0005131
xref: VHOG:0001527
xref: ZFA:0005131
property_value: UBPROP:0000001 "Peritoneum attached to the abdominal wall.[AAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002358 ! peritoneum
relationship: surrounds UBERON:0001179 ! peritoneal cavity
[Term]
id: UBERON:0001367
name: external anal sphincter
def: "The Sphincter ani externus (external anal sphincter) is a flat plane of muscular fibers, elliptical in shape and intimately adherent to the integument surrounding the margin of the anus. [WP,unvetted]." [Wikipedia:Sphincter_ani_externus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "external sphincter ani" EXACT []
synonym: "musculus sphincter ani externus" EXACT []
synonym: "sphincter ani externus" RELATED []
xref: EMAPA:18265
xref: FMA:21930
xref: http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif
xref: MA:0001531
xref: ncithesaurus:External_Anal_Sphincter
xref: SCTID:244969008
is_a: UBERON:0004916 ! anal sphincter
relationship: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0001368
name: obturator externus
def: "An adductor muscle that attaches to the femur and the pelvis. In humans, the obturator externus muscle is a flat, triangular muscle, which covers the outer surface of the anterior wall of the pelvis. It is sometimes considered part of the medial compartment of thigh, and sometimes considered part of the gluteal region. [WP,generalized]." [Wikipedia:Obturator_externus_muscle]
comment: Definition generalized to accommodate AAO class - "Originates on the ventro-lateral pelvic rim and inserts on the ventral aspect of the femur, medial to the insertion of the pectineus." [AAO:0010043]
subset: uberon_slim
synonym: "external obturator" EXACT []
synonym: "external obturator" RELATED [Wikipedia:Obturator_externus_muscle]
synonym: "external obturatus" RELATED [Wikipedia:Obturator_externus_muscle]
synonym: "externus obturator" RELATED [Wikipedia:Obturator_externus_muscle]
synonym: "M. obturator externus" EXACT [AAO:0010043]
synonym: "musculus obturatorius externus" RELATED LATIN [Wikipedia:Obturator_externus_muscle]
synonym: "obturator externus" RELATED [Wikipedia:Obturator_externus_muscle]
synonym: "obturatorius externus" RELATED [Wikipedia:Obturator_externus_muscle]
synonym: "obturatus externus" RELATED [Wikipedia:Obturator_externus_muscle]
xref: AAO:0010043
xref: FMA:22299
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Posterior_Hip_Muscles_1.PNG/200px-Posterior_Hip_Muscles_1.PNG
xref: MA:0002347
xref: ncithesaurus:Obturator_Externus_Muscle
xref: SCTID:245026009
property_value: UBPROP:0000001 "Originates on the ventro-lateral pelvic rim and inserts on the ventral aspect of the femur, medial to the insertion of the pectineus.[AAO]" xsd:string
is_a: UBERON:0011043 {source="FMA"} ! obturator muscle
is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip
relationship: attaches_to UBERON:0002503 {source="FMA"} ! greater trochanter
relationship: has_muscle_insertion UBERON:0000981 {source="dbpedia", notes="trochanteric fossa of femur"} ! femur
relationship: has_muscle_origin UBERON:0006803 {source="dbpedia", notes="obturator foramen and obturatory membrane"} ! obturator foramen
relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle
[Term]
id: UBERON:0001369
name: iliacus muscle
def: "The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]." [Wikipedia:Iliacus_muscle]
comment: AAO has iliacus major and minor, both of which attach to ilium and femur - consider grouping these somehow
subset: uberon_slim
synonym: "anterior muscle of pelvic girdle" EXACT []
synonym: "iliacus" EXACT [MA:0002318]
synonym: "iliacus muscle" RELATED [Wikipedia:Iliacus_muscle]
synonym: "musculus iliacus" RELATED LATIN [Wikipedia:Iliacus_muscle]
xref: EMAPA:19164
xref: FMA:22310
xref: http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: MA:0002318
xref: ncithesaurus:Iliacus
xref: SCTID:244956009
is_a: UBERON:0001497 {source="FMA"} ! muscle of pelvic girdle
relationship: has_muscle_antagonist UBERON:0001370 {source="dbpedia"} ! gluteus maximus
relationship: has_muscle_insertion UBERON:0002504 {source="dbpedia", notes="lesser trochanter of femur"} ! lesser trochanter
relationship: has_muscle_nerve UBERON:0001267 {source="dbpedia"} ! femoral nerve
relationship: has_muscle_origin UBERON:0011015 {source="dbpedia", notes=""} ! iliac fossa
[Term]
id: UBERON:0001370
name: gluteus maximus
def: "The gluteus maximus is the largest and most superficial of the three gluteal muscles. In humans, it makes up a large portion of the shape and appearance of the buttocks. It is a broad and thick fleshy mass of a quadrilateral shape, and forms the prominence of the nates. Its large size is one of the most characteristic features of the muscular system in humans, connected as it is with the power of maintaining the trunk in the erect posture. The muscle is remarkably coarse in structure, being made up of fasciculi lying parallel with one another and collected together into large bundles separated by fibrous septa. [WP,unvetted]." [Wikipedia:Gluteus_maximus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "glutaeus maximus muscle" RELATED [Wikipedia:Gluteus_maximus_muscle]
synonym: "gluteus maximus muscle" EXACT [Wikipedia:Gluteus_maximus_muscle]
synonym: "gluteus superficialis" RELATED []
synonym: "glutæus maximus" EXACT []
synonym: "m.gluteus maximus" EXACT []
synonym: "musculus gluteus maximus" RELATED LATIN [Wikipedia:Gluteus_maximus_muscle]
xref: EMAPA:18527
xref: FMA:22314
xref: http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Posterior_Hip_Muscles_3.PNG/200px-Posterior_Hip_Muscles_3.PNG
xref: MA:0002309
xref: ncithesaurus:Gluteus_Maximus
xref: OpenCyc:Mx4rvVjdMZwpEbGdrcN5Y29ycA
xref: SCTID:181674001
is_a: UBERON:0002000 ! gluteal muscle
relationship: has_muscle_antagonist UBERON:0001298 {source="dbpedia"} ! psoas major muscle
relationship: has_muscle_antagonist UBERON:0001369 {source="dbpedia"} ! iliacus muscle
relationship: has_muscle_antagonist UBERON:0001372 {source="dbpedia"} ! psoas minor muscle
relationship: has_muscle_insertion UBERON:0000981 {notes="Gluteal tuberosity of the femur iliotibial tract", source="dbpedia"} ! femur
relationship: has_muscle_origin UBERON:0001273 {notes="Gluteal surface of ilium lumbar fascia sacrum sacrotuberous ligament", source="dbpedia"} ! ilium
relationship: has_muscle_origin UBERON:0003690 {notes="Gluteal surface of ilium lumbar fascia sacrum sacrotuberous ligament", source="dbpedia"} ! sacrum
relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle
[Term]
id: UBERON:0001371
name: gluteus medius
def: "The gluteus medius (or glutæus medius), one of the three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]." [Wikipedia:Gluteus_medius_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gluteus medius muscle" RELATED [Wikipedia:Gluteus_medius_muscle]
synonym: "musculus gluteus medius" RELATED LATIN [Wikipedia:Gluteus_medius_muscle]
synonym: "musculus gluteus medius" RELATED [Wikipedia:Gluteus_medius_muscle]
xref: EMAPA:19163
xref: FMA:22315
xref: galen:GluteusMedius
xref: http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Posterior_Hip_Muscles_3.PNG/200px-Posterior_Hip_Muscles_3.PNG
xref: MA:0002310
xref: ncithesaurus:Gluteus_Medius
xref: SCTID:181675000
is_a: UBERON:0002000 ! gluteal muscle
relationship: attaches_to UBERON:0002503 {source="FMA"} ! greater trochanter
relationship: has_muscle_insertion UBERON:0002503 {source="dbpedia", notes="Greater trochanter of the femur"} ! greater trochanter
relationship: has_muscle_origin UBERON:0001273 {source="dbpedia", notes="Gluteal surface of ilium under gluteus maximus"} ! ilium
relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle
[Term]
id: UBERON:0001372
name: psoas minor muscle
def: "The psoas minor is a long, slender skeletal muscle that, when present, is placed in front of the psoas major muscle. [WP,unvetted]." [Wikipedia:Psoas_minor_muscle]
comment: Human variation notes: It is absent in 40% of individuals.
subset: uberon_slim
synonym: "m. psoas minor" RELATED LATIN [Wikipedia:Psoas_minor_muscle]
synonym: "psoas minor" EXACT [MA:0002359]
xref: BTO:0001878
xref: EMAPA:18170
xref: FMA:22350
xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray430.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b2/Gray430.png/200px-Gray430.png
xref: MA:0002359
xref: ncithesaurus:Psoas_Minor
xref: SCTID:244954007
is_a: UBERON:0008450 {source="MA"} ! psoas muscle
relationship: has_muscle_insertion UBERON:0001275 {notes="pectineal line", source="dbpedia"} ! pubis
relationship: has_muscle_origin UBERON:0001075 {notes="Lateral surface bodies of T12 and L1 vertebrae and intervening intervertebral disc", source="dbpedia"} ! body of vertebra
[Term]
id: UBERON:0001373
name: sartorius
def: "The Sartorius muscle – the longest muscle in the human body – is a long thin muscle that runs down the length of the thigh. Its upper portion forms the lateral border of the femoral triangle." [Wikipedia:Sartorius_muscle]
comment: Taxon notes (via VHOG): "The ambiens of reptiles and the iliotibialis of amphibians are likely homologues of the sartorius." Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution, Fourth Edition (2006) McGraw-Hill, p.391 [VHOG:0001192]. No iliotibialis in AAO - M. sartorius has def: "Originates on the ventral pelvic rim, the pubic region, and the ventral surface of the adductor longus. The insertion bifurcates distally; the ventral portion attaches to the aponeurosis of the cruralis and the dorsal part attaches to the distal attachment of the gracilis major, the semitendinosus, and to the aponeurosis of the cruralis." [AAO:0010027]. We do NOT group this AAO class here at this stage until further evidence of shared attachments
subset: uberon_slim
synonym: "M. sartorius" RELATED []
synonym: "musculus sartorius" RELATED LATIN [Wikipedia:Sartorius_muscle]
synonym: "sartorius muscle" EXACT []
xref: BTO:0001215
xref: EHDAA2:0001776
xref: EHDAA:10583
xref: FMA:22353
xref: galen:Sartorius
xref: http://upload.wikimedia.org/wikipedia/commons/a/af/Sartorius.png
xref: MA:0002368
xref: ncithesaurus:Sartorius_Muscle
xref: SCTID:181683006
xref: VHOG:0001192
is_a: UBERON:0001630 ! muscle organ
relationship: has_muscle_insertion UBERON:0008977 {notes="anteromedial surface of the upper tibia in the pes anserinus", source="dbpedia"} ! pes anserinus of tibia
relationship: has_muscle_nerve UBERON:0001267 {source="dbpedia", notes="femoral nerve"} ! femoral nerve
[Term]
id: UBERON:0001374
name: biceps femoris
def: "The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]." [Wikipedia:Biceps_femoris_muscle]
subset: uberon_slim
synonym: "biceps femoris muscle" EXACT [BTO:0003418]
synonym: "musculus biceps femoris" RELATED LATIN [Wikipedia:Biceps_femoris_muscle]
xref: BTO:0003418
xref: EFO:0001418
xref: FMA:22356
xref: galen:BicepsFemoris
xref: http://upload.wikimedia.org/wikipedia/commons/b/bc/Biceps_femoris_muscle_long_head.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Biceps_femoris_muscle_long_head.PNG/200px-Biceps_femoris_muscle_long_head.PNG
xref: MA:0002270
xref: ncithesaurus:Biceps_Femoris
xref: SCTID:181672002
is_a: UBERON:0004252 ! hindlimb stylopod muscle
relationship: has_muscle_antagonist UBERON:0001377 {source="dbpedia"} ! quadriceps femoris
relationship: has_muscle_insertion UBERON:0008775 {source="dbpedia", notes="the head of the fibula which articulates with the back of the lateral tibial condyle"} ! proximal epiphysis of fibula
relationship: has_muscle_insertion UBERON:0009989 {source="dbpedia", notes="the head of the fibula which articulates with the back of the lateral tibial condyle"} ! condyle of tibia
relationship: has_muscle_nerve UBERON:0001323 {notes="long head: tibial nerveshort head: common peroneal nerve", source="dbpedia"} ! tibial nerve
relationship: has_muscle_origin UBERON:0000981 {source="dbpedia"} ! femur
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0001375
name: semitendinosus
def: "The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]." [Wikipedia:Semitendinosus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus semitendinosus" RELATED LATIN [Wikipedia:Semitendinosus_muscle]
synonym: "musculus semitendinosus" RELATED [BTO:0001236]
synonym: "semitendinosus muscle" EXACT []
xref: BTO:0001236
xref: FMA:22357
xref: galen:Semitendinosus
xref: http://upload.wikimedia.org/wikipedia/commons/3/3f/Semitendinosus_muscle.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Semitendinosus_muscle.PNG/200px-Semitendinosus_muscle.PNG
xref: MA:0002375
xref: ncithesaurus:Semitendinosus
xref: SCTID:181685004
is_a: UBERON:0003663 ! hindlimb muscle
relationship: has_muscle_antagonist UBERON:0001377 {source="dbpedia"} ! quadriceps femoris
relationship: has_muscle_insertion UBERON:0008977 {source="dbpedia"} ! pes anserinus of tibia
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001376
name: tensor fasciae latae muscle
def: "The tensor fasciae latae or tensor fasciæ latæ is a muscle of the thigh. [WP,unvetted]." [Wikipedia:Tensor_fasciae_latae_muscle]
subset: uberon_slim
synonym: "musculus tensor fasciae latae" EXACT [FMA:22423, FMA:TA]
synonym: "musculus tensor fasciae latae" EXACT LATIN [Wikipedia:Tensor_fasciae_latae_muscle]
synonym: "tensor fasciae lata" EXACT [MA:0002391]
synonym: "tensor fasciae lata muscle" EXACT []
synonym: "tensor fasciae latae" EXACT [FMA:22423]
synonym: "tensor of fascia lata" EXACT []
xref: FMA:22423
xref: http://upload.wikimedia.org/wikipedia/commons/b/bf/Anatomical_dissection5.JPG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: MA:0002391
xref: ncithesaurus:Tensor_Fasciae_Lata
xref: SCTID:181671009
is_a: UBERON:0002000 ! gluteal muscle
relationship: has_muscle_origin UBERON:0010746 ! wing of ilium
[Term]
id: UBERON:0001377
name: quadriceps femoris
def: "The quadriceps femoris, also called simply the quadriceps, quadriceps extensor, quads, is a large muscle group that includes the four prevailing muscles on the front of the thigh. It is the great extensor muscle of the knee, forming a large fleshy mass which covers the front and sides of the femur. It is the strongest and leanest muscle in the human body. It is subdivided into four separate portions or 'heads', which have received distinctive names: Rectus femoris occupies the middle of the thigh, covering most of the other three quadriceps muscles. It originates on the ilium. It is named from its straight course. The other three lie deep to rectus femoris and originate from the body of the femur, which they cover from the trochanters to the condyles: Vastus lateralis is on the lateral side of the femur (i.e. on the outer side of the thigh). Vastus medialis is on the medial side of the femur (i.e. on the inner part thigh). Vastus intermedius lies between vastus lateralis and vastus medialis on the front of the femur (i.e. on the top or front of the thigh). All four parts of the quadriceps muscle attach to the patella (knee cap) via the quadriceps tendon. The quadriceps is also involved in Lombard's Paradox. The proper plural form of the adjective quadriceps is quadricipes, a form not in general use; instead, quadriceps is used in both singular and plural (i.e. , when referring to both legs). The form quadricep [sic], though common even in professional contexts, is incorrect. The error may derive from a mistaken belief that quadriceps is a plural noun (rather than an adjective in the singular), since English typically forms its plurals with the addition of the letter s to the end of a word stem. [WP,unvetted]." [Wikipedia:Quadriceps_femoris_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus quadriceps femoris" RELATED [BTO:0001149]
synonym: "musculus quadriceps femoris" RELATED LATIN [Wikipedia:Quadriceps_femoris_muscle]
synonym: "quadricep muscle" RELATED [BTO:0001149]
synonym: "quadriceps" EXACT []
synonym: "quadriceps femoris muscle" EXACT []
synonym: "quadriceps muscle" RELATED [BTO:0001149]
synonym: "quadriceps muscle of the thigh" RELATED [BTO:0001149]
synonym: "quadriceps muscle of thigh" RELATED [BTO:0001149]
xref: BTO:0001149
xref: EFO:0001938
xref: EHDAA2:0001583
xref: EHDAA:8299
xref: EMAPA:19073
xref: EMAPA:19146
xref: FMA:22428
xref: galen:QuadricepsFemoris
xref: http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg
xref: MA:0002363
xref: ncithesaurus:Quadriceps_Muscle_of_the_Thigh
xref: OpenCyc:Mx4rvVjd-JwpEbGdrcN5Y29ycA
xref: SCTID:181669009
xref: VHOG:0000828
is_a: UBERON:0003663 ! hindlimb muscle
relationship: has_muscle_insertion UBERON:0000979 {source="dbpedia", notes="tibial tuberosity"} ! tibia
relationship: has_muscle_nerve UBERON:0001267 {source="dbpedia"} ! femoral nerve
relationship: has_muscle_origin UBERON:0001378 {notes="combined rectus femoris and vastus muscles", source="dbpedia"} ! rectus femoris
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001378
name: rectus femoris
def: "The Rectus femoris muscle is one of the four quadriceps muscles of the human body. (The others are the vastus medialis, the vastus intermedius, and the vastus lateralis. All four combine to form the quadriceps tendon, which inserts into the patella and continues as the patellar ligament. ) The Rectus femoris is situated in the middle of the front of the thigh; it is fusiform in shape, and its superficial fibers are arranged in a bipenniform manner, the deep fibers running straight down to the deep aponeurosis. [WP,unvetted]." [Wikipedia:Rectus_femoris_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus rectos femoris" EXACT []
xref: BTO:0001564
xref: FMA:22430
xref: http://upload.wikimedia.org/wikipedia/commons/1/14/Rectus_femoris.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Rectus_femoris.png/200px-Rectus_femoris.png
xref: MA:0002365
xref: ncithesaurus:Rectus_Femoris
xref: SCTID:181679006
is_a: UBERON:0003663 ! hindlimb muscle
relationship: has_muscle_antagonist UBERON:0002463 {source="dbpedia"} ! hamstring muscle
relationship: has_muscle_nerve UBERON:0001267 {source="dbpedia"} ! femoral nerve
relationship: has_muscle_origin UBERON:0001269 {notes="anterior inferior iliac spine and the exterior surface of the bony ridge which forms the iliac portion of the acetabulum", source="dbpedia"} ! acetabular part of hip bone
relationship: part_of UBERON:0001377 ! quadriceps femoris
[Term]
id: UBERON:0001379
name: vastus lateralis
def: "The Vastus lateralis (Vastus externus) is the largest part of the Quadriceps femoris. It arises by a broad aponeurosis, which is attached to the upper part of the intertrochanteric line, to the anterior and inferior borders of the greater trochanter, to the lateral lip of the gluteal tuberosity, and to the upper half of the lateral lip of the linea aspera; this aponeurosis covers the upper three-fourths of the muscle, and from its deep surface many fibers take origin. A few additional fibers arise from the tendon of the Glutæus maximus, and from the lateral intermuscular septum between the Vastus lateralis and short head of the Biceps femoris. The fibers form a large fleshy mass, which is attached to a strong aponeurosis, placed on the deep surface of the lower part of the muscle: this aponeurosis becomes contracted and thickened into a flat tendon inserted into the lateral border of the patella, blending with the Quadriceps femoris tendon, and giving an expansion to the capsule of the knee-joint. [WP,unvetted]." [Wikipedia:Vastus_lateralis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateralis" BROAD []
synonym: "vastus externus" RELATED [BTO:0001563]
xref: BTO:0001563
xref: EFO:0001937
xref: FMA:22431
xref: galen:VastusLateralis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg
xref: MA:0002402
xref: ncithesaurus:Vastus_Lateralis
is_a: UBERON:0003663 ! hindlimb muscle
relationship: part_of UBERON:0001377 ! quadriceps femoris
[Term]
id: UBERON:0001380
name: vastus medialis
def: "The vastus medialis, often called the 'teardrop' muscle, is a medially located muscle of the quadriceps. [WP,unvetted]." [Wikipedia:Vastus_medialis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "medialis" BROAD []
xref: BTO:0004913
xref: FMA:22432
xref: galen:VastusMedialis
xref: http://upload.wikimedia.org/wikipedia/commons/3/38/Vastus_medialis.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Vastus_medialis.png/200px-Vastus_medialis.png
xref: MA:0002403
is_a: UBERON:0003663 ! hindlimb muscle
relationship: has_muscle_insertion UBERON:0002446 {source="dbpedia"} ! patella
relationship: has_muscle_nerve UBERON:0001267 {source="dbpedia"} ! femoral nerve
relationship: has_muscle_origin UBERON:0000981 {source="dbpedia"} ! femur
relationship: part_of UBERON:0001377 ! quadriceps femoris
[Term]
id: UBERON:0001381
name: semimembranosus
def: "The semimembranosus is a muscle in the back of the thigh. It is the most medial of the three hamstring muscles. [WP,unvetted]." [Wikipedia:Semimembranosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus semimembranosus" RELATED [BTO:0003177]
xref: BTO:0003177
xref: FMA:22438
xref: galen:Semimembranosus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Semimembranosus_muscle.PNG/200px-Semimembranosus_muscle.PNG
xref: MA:0002371
xref: ncithesaurus:Semimembranosus
is_a: UBERON:0003663 ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001382
name: pectineus muscle
def: "An adductor muscle that attaches to the pelvic bone and the femur. In humans, The pectineus muscle is a flat, quadrangular muscle, situated at the anterior part of the upper and medial aspect of the thigh. It can be classified in the medial compartment of thigh (when the function is emphasized) or the anterior compartment of thigh (when the nerve is emphasized). [WP,generalized]." [Wikipedia:Pectineus_muscle]
comment: Definition generalized to accommodate AAO class - "Originates on the lateral border of the ilium and the anterior margin of the pubis. It inserts on the ventral surface of the femoral shaft." [AAO:0010036]
subset: uberon_slim
synonym: "M. pectineus" EXACT [AAO:0010036]
synonym: "musculus pectineus" RELATED LATIN [Wikipedia:Pectineus_muscle]
synonym: "pectineus" EXACT []
xref: AAO:0010036
xref: FMA:22440
xref: http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: MA:0002353
xref: ncithesaurus:Pectineus
xref: SCTID:245017006
property_value: UBPROP:0000001 "Originates on the lateral border of the ilium and the anterior margin of the pubis. It inserts on the ventral surface of the femoral shaft.[AAO]" xsd:string
is_a: UBERON:0004252 ! hindlimb stylopod muscle
is_a: UBERON:0011144 {source="Wikipedia"} ! adductor muscle of hip
relationship: has_muscle_insertion UBERON:0000981 {source="dbpedia"} ! femur
relationship: has_muscle_nerve UBERON:0001267 {notes="Femoral nerve sometimes obturator nerve", source="dbpedia"} ! femoral nerve
relationship: has_muscle_nerve UBERON:0005465 {notes="Femoral nerve sometimes obturator nerve", source="dbpedia"} ! obturator nerve
relationship: has_muscle_origin UBERON:0001275 {notes="pectineal line - superior pubic ramus", source="dbpedia"} ! pubis
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0001383
name: muscle of leg
def: "." [Wikipedia:Leg_muscle]
comment: Terminology notes: see notes on UBERON:0000978 for possible confusion over the term 'leg'.
subset: uberon_slim
synonym: "leg muscle" EXACT []
synonym: "leg muscle organ" EXACT [OBOL:automatic]
synonym: "muscle of hindlimb zeugopod or stylopod" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "muscle of upper/lower leg" EXACT []
synonym: "muscle organ of leg" EXACT [OBOL:automatic]
xref: BTO:0000722
xref: MA:0000672
is_a: UBERON:0003663 ! hindlimb muscle
relationship: part_of UBERON:0000978
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001384
name: primary motor cortex
def: "a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). The human primary motor cortex is located in the dorsal part of the precentral gyrus and the anterior bank of the central sulcus. The precentral gyrus is in front of the postcentral gyrus from which it is separated by the central sulcus. Its anterior border is the precentral sulcus, while inferiorly it borders to the lateral fissure (Sylvian fissure). Medially, it is contiguous with the paracentral lobule." [Wikipedia:Primary_motor_cortex]
comment: TODO: in MA this is asserted to be part_of BOTH frontal and parietal cortex. in ABA these are disjoint. FMA makes no commitment beyond cerebral cortex. Wikipedia says frontal lobe. Check if species difference or difference in definition. Removed relationship: part_of UBERON:0001872 {source="MA-modified"}
subset: uberon_slim
synonym: "gyrus precentralis" RELATED LATIN [Wikipedia:Primary_motor_cortex]
synonym: "motor cortex" EXACT [FMA:224854]
synonym: "prefrontal gyrus" RELATED [Wikipedia:Primary_motor_cortex]
xref: BM:Tel-Cx-M1
xref: BTO:0004348
xref: EFO:0002472
xref: FMA:224854
xref: http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Ba4.png/200px-Ba4.png
xref: MA:0000907
xref: MESH:A.08.186.211.730.885.213.270.548
xref: ncithesaurus:Primary_Motor_Cortex
xref: SCTID:11931008
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0001870 {source="MA", source="Wikipedia"} ! frontal cortex
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0001385
name: tibialis anterior
def: "In human anatomy, the tibialis anterior is a muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]. The M. tibialis cranialis is a muscle that flexes the tarsometatarsus. It originates on the craniodistal aspect of the femur and proximal tibiotarsus and inserts on the cranial surface of the tarsometarsus[EvoWiki]." [http://evolutionwiki.org/wiki/M._tibialis_cranialis, Wikipedia:Tibialis_anterior_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior tibialis" RELATED [BTO:0001382]
synonym: "ibialis anticus" RELATED [BTO:0001382]
synonym: "musculus tibialis anterior" RELATED LATIN [Wikipedia:Tibialis_anterior_muscle]
synonym: "tibialis anterior muscle" EXACT [BTO:0001382]
synonym: "tibialis cranialis" EXACT [MA:0002395]
synonym: "tibilais cranialis" EXACT []
xref: BTO:0001382
xref: EFO:0001385
xref: FMA:22532
xref: galen:TibialisAnterior
xref: http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray1240.png/200px-Gray1240.png
xref: MA:0002395
xref: ncithesaurus:Tibialis_Cranialis
xref: SCTID:181696007
is_a: UBERON:0008230 ! tibialis
relationship: has_muscle_antagonist UBERON:0001388 {source="dbpedia"} ! gastrocnemius
relationship: has_muscle_antagonist UBERON:0001389 {source="dbpedia"} ! soleus
relationship: has_muscle_antagonist UBERON:0001667 {source="dbpedia"} ! tibialis posterior
relationship: has_muscle_insertion UBERON:0001448 {source="dbpedia", notes="medial cuneiform and first metatarsal bones of the foot"} ! metatarsal bone
relationship: has_muscle_insertion UBERON:0010721 {source="dbpedia", notes="medial cuneiform and first metatarsal bones of the foot"} ! distal tarsal bone
[Term]
id: UBERON:0001386
name: extensor digitorum longus
def: "The Extensor digitorum longus is a pennate muscle, situated at the lateral part of the front of the leg. [WP,unvetted]." [Wikipedia:Extensor_digitorum_longus_muscle]
subset: uberon_slim
synonym: "extensor digitorum longus muscle" EXACT [BTO:0000436]
synonym: "musculus extensor digitorum longus" RELATED LATIN [Wikipedia:Extensor_digitorum_longus_muscle]
synonym: "toe extensor" EXACT [HP:0011916]
synonym: "toe extensor muscle" EXACT []
xref: BTO:0000436
xref: FMA:22534
xref: http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1241.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1241.png/200px-Gray1241.png
xref: MA:0002295
xref: ncithesaurus:Extensor_Digitorum_Longus
is_a: UBERON:0000311 {source="BTO"} ! extensor muscle
is_a: UBERON:0001383 ! muscle of leg
relationship: has_muscle_insertion UBERON:0001449 {source="dbpedia", notes="Dorsal surface; middle and distal phalanges of lateral four digits"} ! phalanx of toe
relationship: has_muscle_nerve UBERON:0001324 {source="dbpedia"} ! common fibular nerve
relationship: has_muscle_origin UBERON:0000979 {notes="Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane", source="dbpedia"} ! tibia
relationship: has_muscle_origin UBERON:0001446 {notes="Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane", source="dbpedia"} ! fibula
relationship: has_muscle_origin UBERON:0009991 {notes="Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane", source="dbpedia"} ! lateral condyle of tibia
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001387
name: fibularis longus
def: "In human anatomy, the peroneus longus (also known as fibularis longus) is a superficial muscle in the lateral compartment of the leg, and acts to evert and plantar flex the ankle. It is situated at the upper part of the lateral side of the leg, and is the most superficial of the three peroneus muscles. It is innervated by the superficial fibular nerve (superficial peroneal nerve). [WP,unvetted]." [Wikipedia:Peroneus_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fibularis longus" RELATED [Wikipedia:Peroneus_longus]
synonym: "fibularis longus muscle" RELATED [Wikipedia:Peroneus_longus]
synonym: "musculus peroneus longus" EXACT [FMA:22539, FMA:TA]
synonym: "peronaei longus" RELATED [Wikipedia:Peroneus_longus]
synonym: "peronaeus longus" RELATED [Wikipedia:Peroneus_longus]
synonym: "peroneous longus" RELATED [Wikipedia:Peroneus_longus]
synonym: "peroneus longus" EXACT []
synonym: "peroneus longus muscle" EXACT []
synonym: "peroneus longus muscle" RELATED [Wikipedia:Peroneus_longus]
xref: FMA:22539
xref: galen:PeroneusLongus
xref: http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray1240.png/200px-Gray1240.png
xref: MA:0002356
xref: ncithesaurus:Peroneus_Longus
xref: SCTID:361825008
is_a: UBERON:0009132 ! peroneus
relationship: has_muscle_antagonist UBERON:0001385 {source="dbpedia"} ! tibialis anterior
relationship: has_muscle_insertion UBERON:0001452 {source="dbpedia"} ! distal tarsal bone 1
relationship: has_muscle_origin UBERON:0001446 {source="dbpedia"} ! fibula
[Term]
id: UBERON:0001388
name: gastrocnemius
def: "In humans, the gastrocnemius muscle is a very powerful superficial muscle that is in the back part of the lower leg and also called the calf. It runs from its two heads just above the knee to the heel, and is involved in standing, walking, running and jumping. Along with the soleus muscle it forms the calf muscle. [WP,unvetted]." [Wikipedia:Gastrocnemius_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gastrocnemius muscle" EXACT [BTO:0000506]
synonym: "m.gastrocnemius" EXACT []
synonym: "musculus gastrocnemius" RELATED [Wikipedia:Gastrocnemius_muscle]
xref: BTO:0000506
xref: EFO:0001413
xref: EHDAA2:0000701
xref: EHDAA:8293
xref: FMA:22541
xref: galen:Gastrocnemius
xref: http://upload.wikimedia.org/wikipedia/commons/8/8e/Gastrocnemius.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8e/Gastrocnemius.png/200px-Gastrocnemius.png
xref: MA:0002306
xref: ncithesaurus:Gastrocnemius_Muscle
xref: SCTID:181700004
xref: VHOG:0001193
is_a: UBERON:0004256 ! hindlimb zeugopod muscle
relationship: has_muscle_antagonist UBERON:0001385 {source="dbpedia"} ! tibialis anterior
relationship: has_muscle_insertion UBERON:0001450 {notes="tendo calcaneus into mid-posteior calcaneus", source="dbpedia"} ! calcaneus
relationship: has_muscle_insertion UBERON:0003701 {notes="tendo calcaneus into mid-posteior calcaneus", source="dbpedia"} ! calcaneal tendon
relationship: has_muscle_nerve UBERON:0001323 {notes="tibial nerve from the sciatic specifically nerve roots", source="dbpedia"} ! tibial nerve
relationship: has_muscle_origin UBERON:0009984 {notes="superior to articular surfaces of lateral condyle of femur and medial condyle of femur", source="dbpedia"} ! medial condyle of femur
relationship: part_of UBERON:0001665 {source="FMA"} ! triceps surae
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0001389
name: soleus
def: "a powerful muscle in the back part of the lower leg (the calf). It runs from just below the knee to the heel, and is involved in standing and walking. It is closely connected to the gastrocnemius muscle and some anatomists consider them to be a single muscle, the triceps surae. Its name is derived from the solefish whose shape it resembles. The soleus is located in the superficial posterior compartment of the leg. Not all mammals have a soleus muscle; one familiar species that lacks the soleus is the dog." [Wikipedia:Soleus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "soleus muscle" RELATED [BTO:0001265]
xref: BTO:0001265
xref: EFO:0001946
xref: FMA:22542
xref: galen:Soleus
xref: http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg
xref: MA:0002424
xref: ncithesaurus:Soleus
xref: SCTID:181702007
property_value: RO:0002161 NCBITaxon:9611
is_a: UBERON:0004256 ! hindlimb zeugopod muscle
relationship: has_muscle_antagonist UBERON:0001385 {source="dbpedia"} ! tibialis anterior
relationship: has_muscle_insertion UBERON:0003701 {source="dbpedia"} ! calcaneal tendon
relationship: has_muscle_nerve UBERON:0001323 {notes="tibial nerve specifically nerve roots ", source="dbpedia"} ! tibial nerve
relationship: has_muscle_origin UBERON:0001446 {source="dbpedia", notes="fibula medial border of tibia"} ! fibula
relationship: part_of UBERON:0001665 ! triceps surae
[Term]
id: UBERON:0001390
name: sural artery
def: "The sural arteries (inferior muscular arteries) are two large branches, which are distributed to the Gastrocnemius, Soleus, and Plantaris. The term applies to any of four or five arteries arising from the popliteal artery, with distribution to the muscles and integument of the calf, and with anastomoses to the posterior tibial, medial and lateral inferior genicular arteries. [WP,unvetted]." [Wikipedia:Sural_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22570
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/60/Gray551.png/200px-Gray551.png
xref: MA:0002058
xref: ncithesaurus:External_Sural_Artery
xref: SCTID:302693002
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001391
name: popliteus muscle
def: "The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]." [Wikipedia:Popliteus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "m.popliteus" EXACT []
synonym: "musculus popliteus" RELATED LATIN [Wikipedia:Popliteus_muscle]
synonym: "popliteal" EXACT []
synonym: "popliteus muscle" EXACT []
xref: FMA:22590
xref: http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray439.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/Gray439.png/200px-Gray439.png
xref: MA:0002554
xref: ncithesaurus:Popliteus_Muscle
xref: SCTID:245032004
is_a: UBERON:0001383 ! muscle of leg
relationship: has_muscle_insertion UBERON:0009980 {notes="middle facet of the lateral surface of the lateral femoral condyle", source="dbpedia"} ! condyle of femur
relationship: has_muscle_nerve UBERON:0001323 {source="dbpedia"} ! tibial nerve
relationship: has_muscle_origin UBERON:0000979 {notes="posterior-medial tibia under the tibial condyles", source="dbpedia"} ! tibia
[Term]
id: UBERON:0001392
name: flexor hallucis longus
def: "The Flexor hallucis longus muscle (FHL) is a muscle of the leg. It is one of the deep muscles of the posterior compartment of the leg. The other deep muscles of the leg are flexor digitorum longus and tibialis posterior. FHL is the largest and most powerful of these deep muscles. The Flexor hallucis longus is situated on the fibular side of the leg. It arises from the inferior two-thirds of the posterior surface of the body of the fibula, with the exception of 2.5 cm. at its lowest part; from the lower part of the interosseous membrane; from an intermuscular septum between it and the Peronæi, laterally, and from the fascia covering the Tibialis posterior, medially. The fibers pass obliquely downward and backward, and end in a tendon which occupies nearly the whole length of the posterior surface of the muscle. This tendon lies in a groove which crosses the posterior surface of the lower end of the tibia, the posterior surface of the talus, and the under surface of the sustentaculum tali of the calcaneus; in the sole of the foot it runs forward between the two heads of the Flexor hallucis brevis, and is inserted into the base of the last phalanx of the great toe. The grooves on the talus and calcaneus, which contain the tendon of the muscle, are converted by tendinous fibers into distinct canals, lined by a mucous sheath. As the tendon passes forward in the sole of the foot, it is situated above, and crosses from the lateral to the medial side of the tendon of the Flexor digitorum longus, to which it is connected by a fibrous slip. [WP,unvetted]." [Wikipedia:Flexor_hallucis_longus_muscle]
subset: uberon_slim
synonym: "flexor hallucis longus muscle" EXACT [Wikipedia:Flexor_hallucis_longus_muscle]
xref: FMA:22593
xref: http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png
xref: MA:0002301
xref: ncithesaurus:Flexor_Hallucis_Longus
xref: SCTID:361826009
is_a: UBERON:0000366 ! flexor muscle
is_a: UBERON:0001383 ! muscle of leg
relationship: has_muscle_insertion UBERON:0004315 {notes="Plantar surface; base of distal phalanx of hallux", source="dbpedia"} ! distal phalanx of foot digit 1
relationship: has_muscle_nerve UBERON:0001323 {notes="tibial nerve S1 and S2 nerve roots", source="dbpedia"} ! tibial nerve
relationship: has_muscle_origin UBERON:0001446 {notes="fibula posterior aspect of middle 1/3", source="dbpedia"} ! fibula
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001393
name: auditory cortex
def: "The primary auditory cortex is the region of the brain that is responsible for processing of auditory information. [WP,unvetted]." [Wikipedia:Auditory_cortex]
subset: uberon_slim
synonym: "A1 (primary auditory cortex)" RELATED [Wikipedia:Primary_auditory_cortex]
synonym: "anterior transverse temporal area 41" RELATED [Wikipedia:Primary_auditory_cortex]
synonym: "auditory cortex" RELATED [Wikipedia:Primary_auditory_cortex]
synonym: "brodmann area 41" RELATED [Wikipedia:Primary_auditory_cortex]
synonym: "brodmann area 41 & 42" RELATED [Wikipedia:Primary_auditory_cortex]
synonym: "brodmann area 42" RELATED [Wikipedia:Primary_auditory_cortex]
synonym: "posterior transverse temporal area 42" RELATED [Wikipedia:Primary_auditory_cortex]
synonym: "primary auditory cortex" RELATED [Wikipedia:Auditory_cortex]
synonym: "temporal auditory neocortex" RELATED [GEO:GSE13344]
xref: BTO:0004343
xref: FMA:226221
xref: GAID:682
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Brodmann_41_42.png/200px-Brodmann_41_42.png
xref: MA:0000942
xref: MESH:A.08.186.211.730.885.213.863.297
xref: ncithesaurus:Auditory_Cortex
is_a: UBERON:0002619 {source="FMA"} ! regional part of cerebral cortex
relationship: part_of UBERON:0001871 {source="MA"} ! temporal lobe
[Term]
id: UBERON:0001394
name: axillary artery
def: "In human anatomy, the axillary artery is a large blood vessel that conveys oxygenated blood to the lateral aspect of the thorax, the axilla (armpit) and the upper limb. Its origin is at the lateral margin of the first rib, before which it is called the subclavian artery. After passing the lower margin of teres major it becomes the brachial artery. [WP,unvetted]." [Wikipedia:Axillary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria axillaris" RELATED LATIN [Wikipedia:Axillary_artery]
synonym: "axillary part of subclavian artery" EXACT [FMA:22654]
synonym: "axillary part of trunk of subclavian artery" EXACT []
xref: EMAPA:18749
xref: FMA:22654
xref: GAID:473
xref: galen:AxillaryArtery
xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Axillary_limits.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/88/Axillary_limits.PNG/200px-Axillary_limits.PNG
xref: MA:0002573
xref: MESH:A.07.231.114.085
xref: ncithesaurus:Axillary_Artery
xref: OpenCyc:Mx4rwRh-vZwpEbGdrcN5Y29ycA
xref: SCTID:181321001
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001009 ! circulatory system
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001395
name: thoraco-acromial artery
def: "The thoracoacromial artery (acromiothoracic artery; thoracic axis) is a short trunk, which arises from the forepart of the axillary artery, its origin being generally overlapped by the upper edge of the Pectoralis minor. [WP,unvetted]." [Wikipedia:Thoraco-acromial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "acromiothoracic artery" EXACT []
synonym: "thoracoacromial artery" EXACT []
xref: FMA:22671
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG
xref: MA:0002064
xref: ncithesaurus:Acromial_Thoracic_Artery
xref: SCTID:244315002
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003233 ! epithelium of shoulder
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001396
name: lateral thoracic artery
def: "In human anatomy, the lateral thoracic artery (or external mammary artery) is a blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the Serratus anterior muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted]." [Wikipedia:Lateral_thoracic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria thoracalis lateralis" RELATED LATIN [Wikipedia:Lateral_thoracic_artery]
synonym: "external mammary artery" EXACT []
xref: FMA:22674
xref: http://upload.wikimedia.org/wikipedia/commons/4/4c/Axillary_branches.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG
xref: MA:0001989
xref: ncithesaurus:Lateral_Thoracic_Artery
xref: SCTID:206135006
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003233 ! epithelium of shoulder
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001397
name: subscapular artery
def: "The subscapular artery, the largest branch of the axillary artery, arises at the lower border of the Subscapularis, which it follows to the inferior angle of the scapula, where it anastomoses with the lateral thoracic and intercostal arteries and with the descending branch of the transverse cervical, and ends in the neighboring muscles. About 4 cm. from its origin it gives off two branches, first the scapular circumflex artery and then the thoracodorsal artery. [WP,unvetted]." [Wikipedia:Subscapular_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria subscapularis" RELATED LATIN [Wikipedia:Subscapular_artery]
xref: FMA:22677
xref: http://upload.wikimedia.org/wikipedia/commons/4/4c/Axillary_branches.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG
xref: MA:0002050
xref: ncithesaurus:Subscapular_Artery
xref: SCTID:244311006
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001398
name: brachial artery
def: "The brachial artery is the major blood vessel of the (upper) arm. It is the continuation of the axillary artery beyond the lower margin of teres major muscle. It continues down the ventral surface of the arm until it reaches the cubital fossa at the elbow. It then divides into the radial and ulnar arteries which run down the forearm. In some individuals, the bifurcation occurs much earlier and the ulnar and radial arteries extend through the upper arm. The pulse of the brachial artery is palpable on the anterior aspect of the elbow, medial to the tendon of the biceps, and, with the use of a stethoscope and sphygmomanometer (blood pressure cuff) often used to measure the blood pressure. The brachial artery is closely related to the median nerve; in proximal regions, the median nerve is immediately lateral to the brachial artery. Distally, the median nerve crosses the medial side of the brachial artery and lies anterior to the elbow joint. [WP,unvetted]." [Wikipedia:Brachial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria brachialis" RELATED LATIN [Wikipedia:Brachial_artery]
synonym: "brachial part of trunk of subclavian artery" EXACT []
xref: AAO:0010504
xref: FMA:22689
xref: GAID:475
xref: galen:BrachialArtery
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray525.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray525.png/200px-Gray525.png
xref: MA:0001921
xref: MESH:A.07.231.114.139
xref: ncithesaurus:Brachial_Artery
xref: OpenCyc:Mx4rwM-i5JwpEbGdrcN5Y29ycA
xref: SCTID:181322008
property_value: UBPROP:0000001 "Part of the subclavian artery which supplies blood to the forelimb.[AAO]" xsd:string
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001399
name: deep brachial artery
def: "The arteria profunda brachii (also known as deep artery of the arm and the deep brachial artery) is a large vessel which arises from the medial and back part of the brachial, just below the lower border of the Teres major. [WP,unvetted]." [Wikipedia:Deep_brachial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria profunda brachii" EXACT [FMA:22695, FMA:TA]
synonym: "profunda brachii artery" EXACT []
xref: FMA:22695
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray526.png/200px-Gray526.png
xref: MA:0002026
xref: SCTID:41065002
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003507 ! arm blood vessel
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001400
name: iliocostalis thoracis muscle
def: "The iliocostalis dorsi (musculus accessorius; iliocostalis thoracis) arises by flattened tendons from the upper borders of the angles of the lower six ribs medial to the tendons of insertion of the iliocostalis lumborum; these become muscular, and are inserted into the upper borders of the angles of the upper six ribs and into the back of the transverse process of the seventh cervical vertebra." [Wikipedia:Iliocostalis#Iliocostalis_thoracis]
synonym: "iliocostalis thoracis" RELATED [Wikipedia:Iliocostalis]
synonym: "iliocostalis thoracis muscle" RELATED [Wikipedia:Iliocostalis]
synonym: "musculus accessorius" RELATED [Wikipedia:Iliocostalis]
xref: FMA:22703
xref: MA:0002320
xref: SCTID:244856005
is_a: UBERON:0002251 ! iliocostalis muscle
[Term]
id: UBERON:0001401
name: longissimus thoracis muscle
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus#Longissimus_thoracis]
comment: Editor's note: TODO - add logical definition to determine if AAO class belongs here. Classified as erector spinae in AAO
subset: uberon_slim
synonym: "longissimus dorsi" RELATED [BTO:0001651]
synonym: "longissimus thoracis" EXACT [MA:0002339]
synonym: "musculus longissimus thoracis" RELATED [BTO:0001651]
xref: AAO:0010775
xref: BTO:0001651
xref: FMA:22709
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png
xref: MA:0002339
xref: ncithesaurus:Longissimus_Thoracis
xref: SCTID:244859003
property_value: UBPROP:0000001 "Epaxial muscle which originates on the antero-lateral urostyle and inserts variably along the neural spines and transverse processes of the presacral vertebrae to the exoccipital bone.[AAO]" xsd:string
is_a: UBERON:0000392 {source="FMA"} ! longissimus muscle
[Term]
id: UBERON:0001402
name: longissimus cervicis muscle
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus#Longissimus_cervicis]
subset: uberon_slim
synonym: "longissimus cervicis" EXACT [MA:0002337]
synonym: "musculus longissimus cervicis" RELATED [BTO:0001650]
xref: BTO:0001650
xref: FMA:22711
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png
xref: MA:0002337
xref: ncithesaurus:Longissimus_Cervicis
xref: SCTID:244860008
is_a: UBERON:0000392 ! longissimus muscle
[Term]
id: UBERON:0001403
name: longissimus capitis
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus#Longissimus_capitis]
subset: uberon_slim
synonym: "musculus longissimus capitis" RELATED [BTO:0001649]
synonym: "trachelomastoid muscle" RELATED [BTO:0001649]
xref: BTO:0001649
xref: FMA:22714
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png
xref: MA:0002336
xref: ncithesaurus:Longissimus_Capitis
xref: SCTID:244861007
is_a: UBERON:0000392 ! longissimus muscle
relationship: has_muscle_insertion UBERON:0011220 {source="Wikipedia:Mastoid_process"} ! mastoid process of temporal bone
[Term]
id: UBERON:0001404
name: radial artery
def: "In human anatomy, the radial artery is the main blood vessel, with oxygenated blood, of the lateral aspect of the forearm. [WP,unvetted]." [Wikipedia:Radial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "A. Radialis" RELATED LATIN [Wikipedia:Radial_artery]
xref: FMA:22730
xref: GAID:506
xref: galen:RadialArtery
xref: http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray1237.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray1237.svg/200px-Gray1237.svg.png
xref: MA:0002034
xref: MESH:A.07.231.114.740
xref: ncithesaurus:Radial_Artery
xref: OpenCyc:Mx4rvxzeR5wpEbGdrcN5Y29ycA
xref: SCTID:181332001
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001405
name: spinalis thoracis muscle
def: "Origin: spinous processes of two upper lumbar and two lower thoracic; insertion: spines of upper thoracic vertebrae; innervation: branches of spinal nerves; action: extends vertebral column." [BTO:0002624]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus spinalis dorsi" RELATED [BTO:0002624]
synonym: "musculus spinalis thoracis" RELATED [BTO:0002624]
synonym: "spinal muscle of thorax" RELATED [BTO:0002624]
synonym: "spinalis dorsi" RELATED [Wikipedia:Spinalis#Spinalis_dorsi]
synonym: "spinalis thoracis" EXACT [MA:0002381]
xref: BTO:0002624
xref: FMA:22765
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Spinalis.png/200px-Spinalis.png
xref: MA:0002381
xref: ncithesaurus:Spinalis_Thoracis
xref: SCTID:244863005
is_a: UBERON:0011013 {source="FMA"} ! spinalis muscle
[Term]
id: UBERON:0001406
name: ulnar artery
def: "The ulnar artery is the main blood vessel, with oxygenated blood, of the medial aspect of the forearm. It arises from the brachial artery and terminates in the superficial palmar arch, which joins with the superficial branch of the radial artery. It is palpable on the anterior and medial aspect of the wrist. Along its course, it is accompanied by a similarly named vein or veins, the ulnar vein or ulnar veins. The ulnar artery, the larger of the two terminal branches of the brachial, begins a little below the bend of the elbow in the cubital fossa, and, passing obliquely downward, reaches the ulnar side of the forearm at a point about midway between the elbow and the wrist. It then runs along the ulnar border to the wrist, crosses the transverse carpal ligament on the radial side of the pisiform bone, and immediately beyond this bone divides into two branches, which enter into the formation of the superficial and deep volar arches. [WP,unvetted]." [Wikipedia:Ulnar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "A. Ulnaris" RELATED LATIN [Wikipedia:Ulnar_artery]
xref: FMA:22796
xref: GAID:515
xref: galen:UlnarArtery
xref: http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray1237.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray1237.svg/200px-Gray1237.svg.png
xref: MA:0002069
xref: MESH:A.07.231.114.920
xref: ncithesaurus:Ulnar_Artery
xref: OpenCyc:Mx4rwAF2PJwpEbGdrcN5Y29ycA
xref: SCTID:181333006
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001407
name: semispinalis thoracis
def: "The Semispinalis dorsi (or semispinalis thoracis) consists of thin, narrow, fleshy fasciculi, interposed between tendons of considerable length. It arises by a series of small tendons from the transverse processes of the sixth to the tenth thoracic vertebræ, and is inserted, by tendons, into the spinous processes of the upper four thoracic and lower two cervical vertebrae. [WP,unvetted]." [Wikipedia:Semispinalis_dorsi]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus semispinalis thoracis, musculus semispinalis dorsi" RELATED LATIN [Wikipedia:Semispinalis_dorsi]
synonym: "semispinalis dorsi" EXACT [Wikipedia:Semispinalis_dorsi]
synonym: "semispinalis dorsi muscle" EXACT [Wikipedia:Semispinalis_dorsi]
xref: FMA:22828
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Semispinalis.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Semispinalis.png/200px-Semispinalis.png
xref: MA:0002374
xref: ncithesaurus:Semispinalis_Thoracis
xref: SCTID:244868001
is_a: UBERON:0011017 {source="FMA"} ! semispinalis muscle
relationship: has_muscle_insertion UBERON:0001076 {notes="spinous processes of the upper four thoracic and lower two cervical vertebrae", source="dbpedia"} ! spinous process of vertebra
relationship: has_muscle_origin UBERON:0001077 {source="dbpedia", notes="transverse processes of the sixth to the tenth thoracic vertebre"} ! transverse process of vertebra
[Term]
id: UBERON:0001408
name: semispinalis cervicis
def: "The semispinalis cervicis (semispinalis colli), thicker than the semispinalis dorsi, arises by a series of tendinous and fleshy fibers from the transverse processes of the upper five or six thoracic vertebræ, and is inserted into the cervical spinous processes, from the axis to the fifth inclusive. The fasciculus connected with the axis is the largest, and is chiefly muscular in structure. [WP,unvetted]." [Wikipedia:Semispinalis_cervicis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus semispinalis cervicis" RELATED LATIN [Wikipedia:Semispinalis_cervicis]
xref: FMA:22829
xref: http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Gray384.png/200px-Gray384.png
xref: MA:0002373
xref: ncithesaurus:Semispinalis_Cervicis
xref: SCTID:244869009
is_a: UBERON:0011017 {source="FMA"} ! semispinalis muscle
relationship: has_muscle_insertion UBERON:0002413 {source="dbpedia", notes="cervical spinous processes from the axis to the fifth"} ! cervical vertebra
relationship: has_muscle_origin UBERON:0001077 {source="dbpedia", notes="transverse processes of the upper five or six thoracic vertebræ"} ! transverse process of vertebra
[Term]
id: UBERON:0001409
name: semispinalis capitis
def: "The Semispinalis capitis (Complexus) is situated at the upper and back part of the neck, deep to the Splenius, and medial to the Longissimus cervicis and capitis. It arises by a series of tendons from the tips of the transverse processes of the upper six or seven thoracic and the seventh cervical vertebræ, and from the articular processes of the three cervical above this. The tendons, uniting, form a broad muscle, which passes upward, and is inserted between the superior and inferior nuchal lines of the occipital bone. The medial part, usually more or less distinct from the remainder of the muscle, is frequently termed the Spinalis capitis; it is also named the Biventer cervicis since it is traversed by an imperfect tendinous inscription. [WP,unvetted]." [Wikipedia:Semispinalis_capitis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus semispinalis capitis" RELATED LATIN [Wikipedia:Semispinalis_capitis]
xref: FMA:22830
xref: http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Gray384.png/200px-Gray384.png
xref: MA:0002372
xref: ncithesaurus:Semispinalis_Capitis
xref: SCTID:244870005
is_a: UBERON:0011017 {source="FMA"} ! semispinalis muscle
relationship: has_muscle_origin UBERON:0001077 {notes="Transversal process of lower cervical and higher thoracal columna", source="dbpedia"} ! transverse process of vertebra
[Term]
id: UBERON:0001410
name: common palmar digital artery
def: "Three common palmar digital arteries arise from the convexity of the superficial palmar arch and proceed distally on the second, third, and fourth lumbricales muscles." [Wikipedia:Common_palmar_digital_artery]
comment: the MA term, even though plural, represents the singular, as it is an isa child of artery
subset: uberon_slim
synonym: "common palmar digital arteries" EXACT []
xref: FMA:22852
xref: MA:0001957
xref: ncithesaurus:Common_Palmar_Digital_Artery
xref: SCTID:38396009
is_a: UBERON:0006141 ! palmar digital artery
[Term]
id: UBERON:0001411
name: basilic vein
def: "In human anatomy, the basilic vein is a large superficial vein of the upper limb that helps drain parts of hand and forearm. It originates on the medial (ulnar) side of the dorsal venous network of the hand, and it travels up the base of the forearm and arm. Most of its course is superficial; it generally travels in the subcutaneous fat and other fasciae that lie superficial to the muscles of the upper extremity. Because of this, it is usually visible through the skin. Near the region anterior to the cubital fossa, in the bend of the elbow joint, the basilic vein usually connects with the other large superficial vein of the upper extremity, the cephalic vein, via the median cubital vein. The layout of superficial veins in the forearm is highly variable from person to person, and there are generally a variety of other unnamed superficial veins that the basilic vein communicates with. About halfway up the arm proper (the part between the shoulder and elbow), the basilic vein goes deep, travelling under the muscles. There, around the lower border of the teres major muscle, the anterior and posterior circumflex humeral veins feed into it, just before it joins the brachial veins to form the axillary vein. Along with other superficial veins in the forearm, the basilic vein is a possible site for venipuncture. [WP,unvetted]." [Wikipedia:Basilic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "basilic vein of forearm" EXACT []
synonym: "vena basilica antebrachii" EXACT [FMA:22908, FMA:TA]
xref: FMA:22908
xref: galen:BasilicVein
xref: http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png
xref: MA:0002086
xref: ncithesaurus:Basilic_Vein
xref: OpenCyc:Mx4rvwrxEpwpEbGdrcN5Y29ycA
xref: SCTID:181393008
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003507 ! arm blood vessel
relationship: part_of UBERON:0001460 ! arm
relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
[Term]
id: UBERON:0001412
name: common palmar digital vein
comment: Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal.
synonym: "proximal palmar digital vein" EXACT [Wikipedia:Palmar_digital_veins]
xref: FMA:22923
xref: MA:0002121
is_a: UBERON:0004563 ! forelimb digital vein
[Term]
id: UBERON:0001413
name: brachial vein
def: "In human anatomy, the brachial veins are venae comitantes of the brachial artery in the arm proper. Because they are deep to muscle, they are considered deep veins. Their course is that of the brachial artery (in reverse): they begin where radial veins and ulnar veins join (corresponding to the bifurcation of the brachial artery). They end at the inferior border of the teres major muscle. At this point, the brachial veins join the basilic vein to form the axillary vein. The brachial veins also have small tributaries that drain the muscles of the upper arm, such as biceps brachii muscle and triceps brachii muscle. [WP,unvetted]." [Wikipedia:Brachial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0010512
xref: FMA:22934
xref: galen:BrachialVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png
xref: MA:0002087
xref: ncithesaurus:Brachial_Vein
xref: OpenCyc:Mx4rwS3In5wpEbGdrcN5Y29ycA
xref: SCTID:181390006
property_value: UBPROP:0000001 "Vein which collects blood from the forelimb and drains into the subclavian vein.[AAO]" xsd:string
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003507 ! arm blood vessel
relationship: part_of UBERON:0001460 ! arm
relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
[Term]
id: UBERON:0001414
name: median cubital vein
def: "In human anatomy, the median cubital vein (or median basilic vein) a superficial vein of the upper limb. It connects the basilic and cephalic vein and is often used for venipuncture (taking blood). It lies in the cubital fossa superficial to the bicipital aponeurosis. There exists a fair amount of variation of the median cubital vein. More commonly the vein forms an H-pattern with the cephalic and basilic veins making up the sides. Other forms include an M-pattern, where the vein branches to the cephalic and basilic veins. [WP,unvetted]." [Wikipedia:Median_cubital_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vena mediana cubiti" RELATED LATIN [Wikipedia:Median_cubital_vein]
xref: FMA:22963
xref: http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Gray574.png/200px-Gray574.png
xref: MA:0002176
xref: OpenCyc:Mx4rvzQSYZwpEbGdrcN5Y29ycA
xref: SCTID:181392003
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein
relationship: tributary_of UBERON:0001411 {source="FMA/obol"} ! basilic vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
[Term]
id: UBERON:0001415
name: skin of pelvis
def: "A zone of skin that is part of a pelvis [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "pelvic skin" EXACT []
synonym: "pelvis skin" EXACT []
synonym: "pelvis zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of pelvis" EXACT [OBOL:automatic]
xref: FMA:22984
xref: MA:0000546
xref: SCTID:181517009
is_a: UBERON:0003836 ! abdominal segment skin
relationship: part_of UBERON:0002355
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0001085 ! skin of trunk
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0001416
name: skin of abdomen
def: "A zone of skin that is part of an abdomen [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "abdomen skin" EXACT []
synonym: "abdomen zone of skin" EXACT [OBOL:automatic]
synonym: "abdominal skin" EXACT []
synonym: "skin of abdomen proper" EXACT [FMA:22988]
synonym: "zone of skin of abdomen" EXACT [OBOL:automatic]
xref: EFO:0000214
xref: FMA:22988
xref: FMA:23000
xref: MA:0000523
xref: ncithesaurus:Abdominal_Skin
xref: SCTID:361707007
is_a: UBERON:0003836 {source="MA"} ! abdominal segment skin
relationship: part_of UBERON:0000916
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 {source="MA"} ! abdomen
[Term]
id: UBERON:0001417
name: skin of neck
def: "A zone of skin that is part of a neck [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "neck (volume) zone of skin" EXACT [OBOL:automatic]
synonym: "neck skin" EXACT []
synonym: "neck zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of neck" EXACT [OBOL:automatic]
synonym: "zone of skin of neck (volume)" EXACT [OBOL:automatic]
xref: FMA:23021
xref: FMA:23022
xref: MA:0000590
xref: ncithesaurus:Neck_Skin
xref: SCTID:361705004
is_a: UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0000974
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0001418
name: skin of thorax
def: "A zone of skin that is part of a thorax [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "thoracic skin" EXACT []
synonym: "thorax skin" EXACT []
synonym: "thorax zone of skin" EXACT [OBOL:automatic]
synonym: "upper body skin" RELATED []
synonym: "zone of skin of thorax" EXACT [OBOL:automatic]
xref: FMA:23028
xref: FMA:23029
xref: MA:0000564
xref: SCTID:281723000
is_a: UBERON:0001085 ! skin of trunk
relationship: part_of UBERON:0000915
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0001419
name: skin of limb
def: "A zone of skin that is part of a limb [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "limb skin" EXACT []
synonym: "limb zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of limb" EXACT [OBOL:automatic]
xref: FMA:23100
xref: MA:0000694
xref: ncithesaurus:Skin_of_the_Extremity
xref: SCTID:314403009
is_a: UBERON:0000014 ! zone of skin
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002101
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0001420
name: subscapular vein
comment: This class was created automatically from a combination of ontologies
xref: FMA:23113
xref: MA:0002224
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
[Term]
id: UBERON:0001421
name: pectoral girdle region
def: "An organism subdivision that includes the pectoral girdle skeleton. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). Examples: Examples: There are only two instances in an organism, right and left pectoral girdle regions." [FMA:23217, UBERON:cjm, UBERONREF:0000003]
comment: Note that this class describes the organism subdivision, NOT the skeleton within. See also: skeleton of pectoral girdle (UBERON:0007831).
subset: uberon_slim
subset: vertebrate_core
synonym: "cingulum membri superioris" EXACT [FMA:23217, FMA:TA]
synonym: "cingulum membri superioris" NARROW [FMA:TA]
synonym: "girdle - pectoral" EXACT []
synonym: "pectoral girdle" RELATED []
synonym: "shoulder girdle" NARROW [FMA:23217]
synonym: "upper limb girdle" NARROW [FMA:23217]
xref: FMA:23217
xref: galen:ShoulderGirdle
xref: SCTID:229759004
xref: VSAO:0000305
property_value: "spatially_disjoint_from" UBERON:0001271
property_value: UBPROP:0000001 "An organism subdivision that includes the pectoral girdle skeleton. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). There is only one instance of the pectoral girdle region per organism.[VSAO]" xsd:string
is_a: UBERON:0007823 ! appendage girdle region
relationship: part_of UBERON:0010708
intersection_of: UBERON:0007823 ! appendage girdle region
intersection_of: part_of UBERON:0010708 ! pectoral complex
disjoint_from: UBERON:0007831 ! skeleton of pectoral girdle
relationship: part_of UBERON:0010708 ! pectoral complex
[Term]
id: UBERON:0001422
name: facial lymphatic vessel
def: "A lymphatic vessel that is part of a face [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "buccal lymphatic vessel" EXACT []
synonym: "face lymph vessel" EXACT [OBOL:automatic]
synonym: "face lymphatic vessel" EXACT [OBOL:automatic]
synonym: "FL" RELATED []
synonym: "lymph vessel of face" EXACT [OBOL:automatic]
synonym: "lymphatic vessel of face" EXACT [OBOL:automatic]
xref: FMA:233946
xref: TAO:0005108
xref: ZFA:0005108
is_a: UBERON:0001473 ! lymphatic vessel
relationship: part_of UBERON:0001456
intersection_of: UBERON:0001473 ! lymphatic vessel
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001423
name: radius bone
def: "The radius is one of the two large bones of the forearm, the other being the ulna. It extends from the lateral side of the elbow to the thumb side of the wrist and runs parallel to the ulna, which exceeds it in length and size. It is a long bone, prism-shaped and slightly curved longitudinally. The radius articulates with the capitulum of the humerus, the radial notch and the head of the ulna. The corresponding bone in the lower leg is the tibia.." [Wikipedia:Radius_(bone)]
comment: In four-legged animals, the radius is the main load-bearing bone of the lower forelimb. Its structure is similar in most terrestrial tetrapods, but it may be fused with the ulna in some mammals (such as horses) and reduced or modified in animals with flippers or vestigial forelimbs [ISBN:0-03-910284-X]
subset: uberon_slim
synonym: "radius" EXACT [MA:0001357]
xref: AAO:0000788
xref: EMAPA:18466
xref: EMAPA:19103
xref: FMA:23463
xref: GAID:185
xref: galen:Radius
xref: MA:0001357
xref: MESH:A.02.835.232.087.702
xref: ncithesaurus:Radius_Bone
xref: OpenCyc:Mx4rwUsDcZwpEbGdrcN5Y29ycA
xref: SCTID:181940002
xref: VSAO:0005012
property_value: UBPROP:0000001 "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the lateral side of the ulna. Its upper end articulates with both the humerus and the ulna, whereas the lower articulates with the carpals.[AAO]" xsd:string
is_a: UBERON:0003466 ! lower arm bone
is_a: UBERON:0003607 ! forelimb long bone
relationship: develops_from UBERON:0006286 {evidence="definitional"} ! radius cartilage condensation
relationship: part_of UBERON:0010703 {source="VSAO"} ! forelimb zeugopod skeleton
[Term]
id: UBERON:0001424
name: ulna
def: "The ulna is a long bone, prismatic in form. In anatomical position the ulna is placed at the medial side of the forearm closest to the body, parallel with the radius on both arms. [WP,unvetted]." [Wikipedia:Ulna]
subset: uberon_slim
xref: AAO:0000789
xref: EMAPA:18467
xref: EMAPA:19104
xref: FMA:23466
xref: GAID:188
xref: galen:Ulna
xref: http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extremity.jpg/200px-Illu_upper_extremity.jpg
xref: MA:0001358
xref: MESH:A.02.835.232.087.911
xref: ncithesaurus:Ulna
xref: OpenCyc:Mx4rwPtIM5wpEbGdrcN5Y29ycA
xref: SCTID:181948009
xref: VSAO:0005013
property_value: UBPROP:0000001 "One of the two long bones of endochondral origin of the fore-epipodium; it is located on the medial (inner) side of the radius. The upper end of the ulna articulates with the lower end of the humerus forming a strong hinge joint with the carpals, whereas the lower articulates with the carpals.[AAO]" xsd:string
is_a: UBERON:0003466 ! lower arm bone
is_a: UBERON:0003607 ! forelimb long bone
relationship: develops_from UBERON:0006306 {evidence="definitional"} ! ulna cartilage condensation
relationship: part_of UBERON:0010703 {source="VSAO"} ! forelimb zeugopod skeleton
[Term]
id: UBERON:0001425
name: pectoral lymphatic vessel
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "PL" RELATED []
xref: FMA:234865
xref: TAO:0005107
xref: ZFA:0005107
is_a: UBERON:0001473 ! lymphatic vessel
[Term]
id: UBERON:0001426
name: jugular lymphatic vessel
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "JL" RELATED []
xref: FMA:234908
xref: TAO:0005109
xref: ZFA:0005109
is_a: UBERON:0001473 ! lymphatic vessel
relationship: develops_from UBERON:0011765 ! jugular lymph sac
[Term]
id: UBERON:0001427
name: scaphoid
def: "The scaphoid Bone is situated at the radial (radius bone) side of the carpus, or laterally between the hand and the forearm in standard medical posture (thumbs pointing outwards). The scaphoid bone is the largest bone of the proximal row of wrist bones, its long axis being from above downward, lateralward, and forward. It is approximately the size and shape of a medium sized cashew. The bone takes a semi-similar form of a boat. In reptiles, birds, and amphibians, this bone is instead commonly referred to as the radiale, because of its articulation with the radius. [WP,unvetted]." [Wikipedia:Scaphoid]
comment: todo - check AAO placement; in rodents this is fused with the lunate to make the scapholunate
subset: uberon_slim
synonym: "navicular bone of hand" EXACT []
synonym: "navicular of hand" RELATED []
synonym: "os carpi radiale" EXACT []
synonym: "os naviculare manus" RELATED [Wikipedia:Scaphoid_bone]
synonym: "os scaphoideum" RELATED [Wikipedia:Scaphoid_bone]
synonym: "radial carpal bone" RELATED []
synonym: "radiale" RELATED [AAO:0000790, Wikipedia:Scaphoid]
synonym: "scaphoid bone" EXACT []
synonym: "scaphoideum" RELATED [Wikipedia:Scaphoid_bone]
xref: AAO:0000790
xref: FMA:23709
xref: GAID:180
xref: galen:Scaphoid
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0002555
xref: MESH:A.02.835.232.087.144.650
xref: ncithesaurus:Scaphoid_Bone
xref: OpenCyc:Mx4rwAwWe5wpEbGdrcN5Y29ycA
xref: SCTID:181958008
property_value: UBPROP:0000001 "One of two element that constitute the basal row of carpals. It articulates proximally with the radius, mesially with the ulnare (or pars intermedia of the ulnare when the ulnare is fused to the intermedium) and distally with the centrale (also recognized by some authors as element Y). This element originates from one or two condensation centers. Occasionally it may fuse to carpal 5(4), the ulnare, or other elements.[AAO]" xsd:string
is_a: UBERON:0001480 ! proximal carpal bone
[Term]
id: UBERON:0001428
name: lunate
def: "The lunate bone (semilunar bone) is a carpal bone (wrist bone) in the human hand that may be distinguished by its deep concavity and crescentic outline. It is situated in the center of the proximal row of the carpus (wrist) region between the fore arm and hand (manus). In standard medical posture, the lunate carpal bone is situated between the lateral Scaphoid bone and medial Triquetral bone. The lunate carpal bone straddles distally the bordering ulna and radius bones and proximally to distal carpus (wrist) Trapezium bone and Trapezoid bone[WP]." [Wikipedia:Lunate_bone]
comment: Taxon notes: articulating with the ulnare and the radiale[VSAO}. human articulations: radius proximally capitate and hamate distally scaphoid laterally triangular medially
subset: uberon_slim
synonym: "intermediate carpal bone" RELATED []
synonym: "lunar" EXACT [VSAO:0005040]
synonym: "lunate bone" EXACT []
synonym: "os carpi intermedium" EXACT []
synonym: "os lunatum" EXACT [VSAO:0005040]
synonym: "os lunatum" RELATED LATIN [Wikipedia:Lunate_bone]
synonym: "semilunar" RELATED []
synonym: "semilunar bone" EXACT []
xref: FMA:23712
xref: GAID:181
xref: galen:Lunate
xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png
xref: MA:0002556
xref: MESH:A.02.835.232.087.144.663
xref: ncithesaurus:Lunate_Bone
xref: SCTID:181959000
xref: VSAO:0005040
is_a: UBERON:0001480 {source="FMA"} ! proximal carpal bone
[Term]
id: UBERON:0001429
name: pisiform
def: "The pisiform bone (also called pisiform or lentiform bone) is a small knobbly, pea-shaped wrist bone. The pisiform bone is found in the proximal row of the carpus. It is located where the ulna (inner bone of the forearm when in anatomical position) joins the carpus (wrist). It articulates only with the triquetral. It is a sesamoid bone. The pisiform bone may be known by its small size, and by its presenting a single articular facet. It is situated on a plane anterior to the other carpal bones and is spheroidal in form. The etymology derives from the Latin pīsum which means 'pea.' [WP,unvetted]." [Wikipedia:Pisiform_bone]
comment: todo - classify as sesamoid?
subset: uberon_slim
synonym: "accessory carpal bone" RELATED [MA:0001339]
synonym: "os pisiforme" RELATED LATIN [Wikipedia:Pisiform_bone]
synonym: "pisiform bone" EXACT [FMA:23718]
xref: FMA:23718
xref: galen:Pisiform
xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0001339
xref: ncithesaurus:Pisiform_Bone
xref: OpenCyc:Mx4rvtByTZwpEbGdrcN5Y29ycA
xref: SCTID:9181003
is_a: UBERON:0001480 {source="FMA", source="MA"} ! proximal carpal bone
is_a: UBERON:0007997 ! sesamoid bone of hand
[Term]
id: UBERON:0001430
name: distal carpal bone 1
def: "." [Wikipedia:Trapezium_(bone)]
comment: Taxon notes: located between radiale and first metacarpal[VSAO]. in humans - The capitate articulates with 1st metacarpal distally, scaphoid proximally, trapezoid medially, 2nd metacarpal medially[WP]
subset: uberon_slim
synonym: "carpal 1" RELATED [AAO:0010634]
synonym: "distal carpal 1" EXACT [VSAO:0005043]
synonym: "greater multangular bone" EXACT []
synonym: "greater multiangular" RELATED [MA:0001340]
synonym: "hand distal carpal bone 1" RELATED [MA:0001340]
synonym: "os trapezium" EXACT [VSAO:0005043]
synonym: "trapezial bone" EXACT [FMA:23721]
synonym: "trapezium" EXACT [VSAO:0005043]
synonym: "trapezium bone" EXACT [FMA:23721]
xref: AAO:0010634
xref: FMA:23721
xref: galen:Trapezium
xref: MA:0001340
xref: ncithesaurus:Trapezial_Bone
xref: OpenCyc:Mx4rv3CbrJwpEbGdrcN5Y29ycA
xref: SCTID:361780007
xref: VSAO:0005043
is_a: UBERON:0001481 {source="FMA"} ! distal carpal bone
[Term]
id: UBERON:0001431
name: distal carpal bone 2
def: "." [Wikipedia:Trapezoid_(bone)]
comment: Taxon notes: located in the distal part of the carpus and articulating with the second metacarpal, the distal carpals 1 and 2 and the radiale.[VSAO] in humans - The capitate articulates with 2nd metacarpal distally, scaphoid proximally, trapezium medially, capitate medially[WP] Amphibians: Small element that articulates with the prepollex, metacarpal II(I) and metacarpal III(II). It may be fused to element Y or carpal 3(2)[AAO]
subset: uberon_slim
synonym: "carpal 2" RELATED [AAO:0000848]
synonym: "distal carpal 2" EXACT [VSAO:0005044]
synonym: "hand distal carpal bone 2" RELATED [MA:0001341]
synonym: "lesser multangular bone" EXACT [FMA:23724]
synonym: "lesser multiangular" RELATED [MA:0001341]
synonym: "os trapezoideum" EXACT [VSAO:0005044]
synonym: "trapezoid" EXACT [VSAO:0005044]
synonym: "trapezoid bone" EXACT [FMA:23724]
xref: AAO:0000848
xref: FMA:23724
xref: galen:Trapezoid
xref: MA:0001341
xref: ncithesaurus:Trapezoid_Bone
xref: OpenCyc:Mx4rvVvsjpwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvxNWBJwpEbGdrcN5Y29ycA
xref: SCTID:361781006
xref: VSAO:0005044
property_value: UBPROP:0000001 "Small element that articulates with the prepollex, metacarpal II(I) and metacarpal III(II). It may be fused to element Y or carpal 3(2).[AAO]" xsd:string
is_a: UBERON:0001481 ! distal carpal bone
[Term]
id: UBERON:0001432
name: distal carpal bone 3
def: "." [Wikipedia:Capitate_bone]
comment: Taxon notes: medially located and articulates with metacarpals 2-4, distal carpal 5 and the intermedium[VSAO] In the human hand, the capitate bone is the largest of the carpal bones, and occupies the center of the wrist - The capitate articulates with seven bones: the scaphoid and lunate proximally, the second metacarpal, third metacarpal, and fourth metacarpal distally, the lesser multangular on the radial side, and the hamate on the ulnar side[WP] Amphibians: Small element that articulates anteriorly with metacarpal III(II). It may be fused to carpals 2(1), 4(3), 5(4), or other elements[AAO]
subset: uberon_slim
synonym: "capitate" EXACT [MA:0001342]
synonym: "capitate bone" EXACT [FMA:23727]
synonym: "carpal 3" RELATED [AAO:0000849]
synonym: "distal carpal 3" EXACT [VSAO:0005045]
synonym: "hand distal carpal bone 3" RELATED [MA:0001342]
synonym: "magnum" RELATED [VSAO:0005045]
synonym: "os capitatum" RELATED [Wikipedia:Capitate_bone]
synonym: "os magnum" RELATED []
synonym: "os magnum (carpus)" EXACT [FMA:23727]
xref: AAO:0000849
xref: FMA:23727
xref: galen:Capitate
xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0001342
xref: ncithesaurus:Capitate_Bone
xref: OpenCyc:Mx4rvZFPrZwpEbGdrcN5Y29ycA
xref: SCTID:181964001
xref: VSAO:0005045
property_value: UBPROP:0000001 "Small element that articulates anteriorly with metacarpal III(II). It may be fused to carpals 2(1), 4(3), 5(4), or other elements.[AAO]" xsd:string
is_a: UBERON:0001481 {source="FMA"} ! distal carpal bone
[Term]
id: UBERON:0001433
name: distal carpal bone 4
def: "." [Wikipedia:Hamate_bone]
comment: Taxon notes: articulates with the lunar, distal carpal 3, the ulnare as well as metacarpals 4 and 5.[VSAO]. In the human hand the lunate proximally the fourth and fifth metacarpals distally the triangular medially the capitate laterally[WP] Amphibians: Small element that articulates anteriorly with metacarpal IV(III). It may be fused to carpal 3(2), 5(4), or other elements[AAO]
subset: uberon_slim
synonym: "carpal 4" RELATED [AAO:0000850]
synonym: "distal carpal 4" EXACT [VSAO:0005046]
synonym: "hamate" EXACT [MA:0001343]
synonym: "hamate bone" EXACT [FMA:23730]
synonym: "hand distal carpal bone 4" RELATED [MA:0001343]
synonym: "os hamatum" RELATED LATIN [Wikipedia:Hamate_bone]
synonym: "os hamatum" RELATED [VSAO:0005046]
synonym: "unciform" RELATED [MA:0001343]
synonym: "unciform bone" EXACT [FMA:23730]
synonym: "uncinate" RELATED [MA:0001343]
xref: AAO:0000850
xref: FMA:23730
xref: galen:Hamate
xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0001343
xref: ncithesaurus:Hamate_Bone
xref: OpenCyc:Mx4rwFTmuJwpEbGdrcN5Y29ycA
xref: SCTID:181967008
xref: VSAO:0005046
property_value: UBPROP:0000001 "Small element that articulates anteriorly with metacarpal IV(III). It may be fused to carpal 3(2), 5(4), or other elements.[AAO]" xsd:string
is_a: UBERON:0001481 {source="FMA"} ! distal carpal bone
[Term]
id: UBERON:0001434
name: skeletal system
def: "Organ system subdivision which consists of the skeleton and the articular system.[FMA]" [AAO:0000566, FMA:FMA]
comment: Note that GO defines skeletal system very generically: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501; however, all annotations are to vertebrates
subset: uberon_slim
subset: vertebrate_core
synonym: "set of all bones and joints" NARROW SENSU []
synonym: "skeleton system" EXACT []
synonym: "Skelettsystem" RELATED [BTO:0001486]
xref: AAO:0000566
xref: BTO:0001486
xref: EFO:0000806
xref: EHDAA2:0003168
xref: FMA:23881
xref: MA:0000018
xref: ncithesaurus:Skeletal_System
xref: OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA
xref: TAO:0000434
xref: VHOG:0001254
xref: VSAO:0000027
xref: XAO:0003060
xref: ZFA:0000434
property_value: "spatially_disjoint_from" UBERON:0001016
property_value: UBPROP:0000001 "Anatomical system consisting of multiple elements and tissues that provides physical support.[TAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical system that is a multi-element, multi-tissue anatomical cluster that consists of the skeleton and the articular system.[VSAO]" xsd:string
property_value: UBPROP:0000001 "System that provides physical support to the organism.[AAO]" xsd:string
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0001474 ! bone
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0001435
name: carpal bone
def: "A bone that is part of the carpal skeleton. Examples: scaphoid, lunate, capitate[cjm]. In tetrapods, the carpals is the sole cluster of the bones in the wrist between the radius and ulna and the metacarpus. The bones of the carpus do not belong to individual fingers (or toes in quadrupeds), whereas those of the metacarpus do. The corresponding part of the foot is the tarsus. The carpal bones allow the wrist to move and rotate vertically, horizontally and laterally. In human anatomy, the main role of the carpus is to facilitate effective positioning of the hand and powerful use of the extensors and flexors of the forearm, but the mobility of individual carpal bones increase the freedom of movements at the wrist. [WP,unvetted]." [UBERON:cjm, Wikipedia:Carpus]
subset: uberon_slim
synonym: "bone of carpus" EXACT []
synonym: "carpal skeleton bone" EXACT []
xref: EMAPA:25056
xref: FMA:23889
xref: GAID:179
xref: galen:CarpalBone
xref: http://upload.wikimedia.org/wikipedia/commons/5/58/Carpus.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/58/Carpus.svg/200px-Carpus.svg.png
xref: MA:0000296
xref: MESH:A.02.835.232.087.144
xref: ncithesaurus:Carpal_Bone
xref: SCTID:83936004
is_a: UBERON:0003656 ! mesopodium bone
is_a: UBERON:0005897 ! hand bone
relationship: part_of UBERON:0004452
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0004452 ! carpal region
relationship: develops_from UBERON:0006213 ! carpus cartilage condensation
relationship: part_of UBERON:0004452 ! carpal region
relationship: part_of UBERON:0009880 ! carpal skeleton
[Term]
id: UBERON:0001436
name: phalanx of finger
def: "A phalanx that is part of a forelimb autopod[Obol]." [UBERON:cjm]
synonym: "digitus manus phalanx" EXACT [OBOL:automatic]
synonym: "finger phalanx" EXACT [OBOL:automatic]
synonym: "hand digit phalanx" EXACT [OBOL:automatic]
synonym: "hand phalanx" EXACT [MA:0000306]
synonym: "hand phalanx" EXACT []
synonym: "phalanges of fore digit" RELATED PLURAL [AAO:0000947]
synonym: "phalanx of digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of digitus manus" EXACT [OBOL:automatic]
synonym: "phalanx of fore digit" EXACT []
synonym: "phalanx of hand" EXACT []
synonym: "phalanx of hand digit" EXACT [OBOL:automatic]
synonym: "phalanx of manus" EXACT []
xref: AAO:0000947
xref: FMA:23914
xref: http://mbe.oxfordjournals.org/content/26/3/613/F1.large.jpg
xref: MA:0000306
xref: ncithesaurus:Hand_Phalanx
xref: SCTID:181976001
property_value: UBPROP:0000001 "Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that make the four digits of the manus. The terminal phalanges are much smaller than the proximal and penultimate phalanges. The typical phalangeal formula of the manus, in a medial to lateral sequence, is 2-2-3-3.[AAO]" xsd:string
is_a: UBERON:0003221 ! phalanx
is_a: UBERON:0003607 ! forelimb long bone
is_a: UBERON:0004249 ! hand digit bone
relationship: part_of UBERON:0002389
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: develops_from UBERON:0010686 ! finger phalanx cartilage condensation
relationship: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0010688 ! skeleton of anterior acropodium
[Term]
id: UBERON:0001437
name: epiphysis
def: "Subdivision of long bone which forms its expanded proximal or distal articular end; together with other the subdivisions of long bone, it constitutes the long bone. Examples: proximal epiphysis of humerus, distal epiphysis of femur.[FMA]" [FMA:FMA, Wikipedia:Epiphysis]
comment: see also: annular epiphysis
subset: uberon_slim
synonym: "end of long bone" EXACT []
synonym: "epiphyses" EXACT PLURAL []
synonym: "long bone epiphysis" EXACT []
xref: AAO:0000742
xref: BTO:0000413
xref: FMA:24012
xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Illu_long_bone.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Illu_long_bone.jpg/200px-Illu_long_bone.jpg
xref: MA:0001362
xref: MESH:A.02.835.232.251
xref: ncithesaurus:Long_Bone_Epiphysis
xref: SCTID:244701002
property_value: UBPROP:0000001 "Cartilaginous expansion at the distal end of an anterior rib or transverse process that serves for the attachment of muscles suspending the pectoral girdle to the vertebral column.[AAO]" xsd:string
is_a: UBERON:0005055 ! zone of long bone
[Term]
id: UBERON:0001438
name: metaphysis
def: "Subdivision of diaphysis which forms the proximal or distal end of diaphysis next to the epiphysis; together with diaphysis proper, it constitutes the diaphysis. Examples: proximal metaphysis of humerus, distal metaphysis of femur.[FMA]" [FMA:FMA, Wikipedia:Metaphysis]
comment: adjacent to or containing epiphyseal plate? Note in FMA the metaphysis is part of the diaphysis, but not in MA. In the diagram in WP, it appears to be adjacent, not part_of.
subset: uberon_slim
synonym: "diaphyseal end of long bone" EXACT []
synonym: "long bone metaphysis" EXACT []
synonym: "metaphyses" EXACT PLURAL []
xref: FMA:24014
xref: MA:0001363
xref: ncithesaurus:Metaphysis
xref: SCTID:304581004
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0004769 ! diaphysis
[Term]
id: UBERON:0001439
name: compact bone
def: "one of the two types of osseous tissue that form bones. Compact/Cortical bone facilitates bone's main functions: to support the body, protect organs, provide levers for movement, and store and release chemical elements, mainly calcium. As its name implies, cortical bone forms the cortex, or outer shell, of most bones. Again, as its name implies, compact bone is much denser than cancellous bone, which is the other type of osseous tissue. Furthermore, it is harder, stronger and stiffer than cancellous bone. Cortical bone contributes about 80% of the weight of a human skeleton. The primary anatomical and functional unit of cortical bone is the osteon.." [Wikipedia:Compact_bone]
comment: MP distinguishes compact/cortical bone. in other AOs they are syns
subset: uberon_slim
synonym: "bony cortex" EXACT [HP:0002753]
synonym: "compact bone tissue" EXACT []
synonym: "cortical bone" EXACT []
synonym: "cortical bone tissue" EXACT []
synonym: "cortical region of bone" EXACT []
synonym: "substantia compacta (pars ossea)" EXACT []
synonym: "substantia corticalis" EXACT [FMA:24018, FMA:TA]
xref: FMA:24018
xref: galen:CorticalBone
xref: MA:0001461
xref: ncithesaurus:Cortical_Bone
xref: SCTID:361728003
is_a: UBERON:0002481 ! bone tissue
disjoint_from: UBERON:0002483 ! trabecular bone tissue
relationship: part_of UBERON:0002482 ! lamellar bone
[Term]
id: UBERON:0001440
name: forelimb skeleton
def: "The collection of all skeletal elements in a forelimb region. Excludes the pectoral girdle" [UBERON:cjm]
comment: TODO - find a home for: FMA:24139
synonym: "bones of upper limb" EXACT []
synonym: "fore limb skeleton" EXACT []
synonym: "forelimb skeleton" EXACT [VHOG:0001256]
synonym: "ossa membri superioris" EXACT [FMA:24139, FMA:TA]
synonym: "set of bones of upper limb" EXACT []
synonym: "skeleton of forelimb" EXACT []
synonym: "skeleton of pectoral limb" EXACT []
synonym: "skeleton of upper limb" EXACT [FMA:24139]
synonym: "upper limb skeleton" EXACT [EHDAA2:0002222]
xref: AAO:0000202
xref: EHDAA2:0002222
xref: FMA:24142
xref: VHOG:0001256
xref: VSAO:0000151
xref: XAO:0003061
property_value: "has_no_connections_with" UBERON:0001441
property_value: UBPROP:0000001 "Skeletal structure of the paired, anterior appendages.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string
is_a: UBERON:0004381 ! skeleton of limb
is_a: UBERON:0007272 ! pectoral appendage skeleton
relationship: subdivision_of UBERON:0002102
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 {source="FMA"} ! forelimb
relationship: proximally_connected_to UBERON:0007831 ! skeleton of pectoral girdle
relationship: subdivision_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0001441
name: hindlimb skeleton
def: "The collection of all skeletal elements in an hindlimb region." [UBERON:cjm]
comment: TOOD - find a home for: FMA:24140
subset: uberon_slim
synonym: "bones of lower limb" EXACT []
synonym: "hind limb skeleton" EXACT [XAO:0003062]
synonym: "hindlimb skeleton" EXACT [VHOG:0001255]
synonym: "lower limb skeleton" EXACT []
synonym: "ossa membri inferioris" EXACT [FMA:24140, FMA:TA]
synonym: "set of bones of lower limb" EXACT []
synonym: "skeleton of lower limb" EXACT [FMA:24140]
xref: AAO:0000217
xref: EHDAA2:0002226
xref: FMA:24144
xref: OpenCyc:Mx4rvZcKkZwpEbGdrcN5Y29ycA
xref: VHOG:0001255
xref: VSAO:0000152
xref: XAO:0003062
property_value: UBPROP:0000001 "Skeletal structure of the paired, posterior appendages.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string
is_a: UBERON:0004381 ! skeleton of limb
is_a: UBERON:0007273 ! pelvic appendage skeleton
relationship: subdivision_of UBERON:0002103
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 {source="FMA"} ! hindlimb
relationship: proximally_connected_to UBERON:0007832 ! skeleton of pelvic girdle
relationship: subdivision_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001442
name: skeleton of hand
def: "The collection of all skeletal elements in a hand; here 'hand' includes both the wrist region and hand proper." [UBERON:cjm]
synonym: "anterior autopodium" RELATED [VSAO:0005020, VSAO:NI]
synonym: "anterior autopodium skeleton" EXACT []
synonym: "bones of hand" EXACT [FMA:24159]
synonym: "fore autopod skeleton" EXACT []
synonym: "forelimb autopod skeleton" EXACT []
synonym: "hand region skeleton" EXACT [EHDAA2:0002227]
synonym: "hand skeleton" EXACT [FMA:24159]
synonym: "manus" RELATED [VSAO:0005020, VSAO:NI]
synonym: "manus skeleton" EXACT []
synonym: "ossa manus" EXACT [FMA:24159, FMA:TA]
synonym: "set of bones of hand" EXACT [FMA:24159]
xref: EHDAA2:0002227
xref: FMA:24159
xref: OpenCyc:Mx4rvdHPJJwpEbGdrcN5Y29ycA
xref: VSAO:0005020
is_a: UBERON:0006717 ! skeleton of autopod
relationship: subdivision_of UBERON:0002398
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002398 ! hand
relationship: part_of UBERON:0001440 {source="EHDAA2"} ! forelimb skeleton
relationship: part_of UBERON:0002398 ! hand
relationship: subdivision_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001443
name: chest
def: "Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]." [FMA:9576, Wikipedia:Chest]
comment: editor note - FMA:24216 present in FMA1, but gone in subsequent versions
subset: uberon_slim
synonym: "anterior chest" EXACT [FMA:24816]
synonym: "anterior thoracic region" EXACT []
synonym: "anterolateral part of thorax" EXACT []
synonym: "front of chest" EXACT [FMA:24816]
synonym: "front of thorax" EXACT []
synonym: "pectus" EXACT [FMA:24816, FMA:TA]
synonym: "thorax" RELATED [FMA:9576]
synonym: "thorax" RELATED LATIN [Wikipedia:Chest]
synonym: "ventral part of thoracic region" EXACT []
xref: BTO:0001368
xref: EFO:0000965
xref: EV:0100010
xref: FMA:9576
xref: GAID:91
xref: galen:Chest
xref: galen:Thorax
xref: http://upload.wikimedia.org/wikipedia/commons/d/db/Chest.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Chest.jpg/200px-Chest.jpg
xref: MA:0000031
xref: MAT:0000295
xref: MESH:A.01.911
xref: MIAA:0000295
xref: ncithesaurus:Chest
xref: ncithesaurus:Thorax
xref: OpenCyc:Mx4rvVikFZwpEbGdrcN5Y29ycA
property_value: "spatially_disjoint_from" UBERON:0000916
is_a: UBERON:0009569 {source="FMA-modified"} ! subdivision of trunk
relationship: part_of UBERON:0000915 {source="FMA", source="MA"} ! thoracic segment of trunk
[Term]
id: UBERON:0001444
name: subdivision of head
comment: This class was created automatically from a combination of ontologies
synonym: "head region" EXACT []
synonym: "head subdivision" EXACT []
synonym: "region of head" EXACT []
xref: FMA:24218
xref: SCTID:123852005
xref: XAO:0000040
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0001445
name: skeleton of foot
def: "Subdivision of skeleton that is the collection of all skeletal elements in a foot; here 'foot' includes both the ankle region and foot proper." [UBERON:cjm]
synonym: "foot region skeleton" EXACT [EHDAA2:0002228]
synonym: "foot skeleton" EXACT [FMA:24222]
synonym: "pes" RELATED [VSAO:0005021, VSAO:NI]
synonym: "pes skeleton" EXACT []
synonym: "posterior autopodium" RELATED [VSAO:0005021, VSAO:NI]
synonym: "posterior autopodium skeleton" EXACT []
synonym: "set of bones of foot" EXACT [FMA:24222]
xref: EHDAA2:0002228
xref: FMA:24222
xref: VSAO:0005021
is_a: UBERON:0006717 ! skeleton of autopod
relationship: subdivision_of UBERON:0002387
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002387 ! foot
relationship: part_of UBERON:0001441 {source="EHDAA2"} ! hindlimb skeleton
relationship: part_of UBERON:0002387 ! foot
relationship: subdivision_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001446
name: fibula
def: "The fibula or calf bone is a bone located on the lateral side of the tibia, with which it is connected above and below. It is the smaller of the two bones, and, in proportion to its length, the most slender of all the long bones. Its upper extremity is small, placed toward the back of the head of the tibia, below the level of the knee-joint, and excluded from the formation of this joint. Its lower extremity inclines a little forward, so as to be on a plane anterior to that of the upper end; it projects below the tibia, and forms the lateral part of the ankle-joint. [WP,unvetted]." [Wikipedia:Fibula]
subset: uberon_slim
xref: AAO:0000891
xref: BTO:0002346
xref: EFO:0003052
xref: EMAPA:18512
xref: EMAPA:19141
xref: FMA:24479
xref: GAID:202
xref: galen:Fibula
xref: http://upload.wikimedia.org/wikipedia/commons/1/16/Illu_lower_extremity.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Illu_lower_extremity.jpg/200px-Illu_lower_extremity.jpg
xref: MA:0001360
xref: MESH:A.02.835.232.500.321
xref: ncithesaurus:Fibula
xref: SCTID:302529003
property_value: UBPROP:0000001 "One of the two long bones of endochondral origin of the hind-epipodium; it is a rather more slender bone than the tibia but of about the same length.[AAO]" xsd:string
is_a: UBERON:0003608 ! hindlimb long bone
is_a: UBERON:0004251 ! lower leg bone
relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton
[Term]
id: UBERON:0001447
name: tarsal bone
def: "A bone that is part of the tarsal skeleton. Examples: calcaneus, talus, centralia." [UBERON:cjm]
comment: In primitive tetrapods, such as Trematops, the tarsus consists of three rows of bones. There are three proximal tarsals, the tibiale, intermedium, and fibulare, named for their points of articulation with the bones of the lower limb. These are followed by a second row of four bones, referred to as the centralia (singular: centrale), and then a row of five distal tarsals, each articulating with a single metatarsal. In the great majority of tetrapods, including all of those alive today, this simple pattern is modified by the loss and fusion of various of the bones.[3] In reptiles and mammals, there are normally just two proximal tarsals, the calcaneus (equivalent to the amphibian fibulare) and the talus (probably derived from a fusion of multiple bones). In mammals, including humans, the talus forms a hinge joint with the tibia, a feature especially well developed in the artiodactyls. The calcaneus is also modified, forming a heel for the attachment of the Achilles tendon. Neither of these adaptations is found in reptiles, which have a relatively simple structure to both bones.[3] The fifth distal tarsal disappears relatively early in evolution, with the remainder becoming the cuneiform and cuboid bones. Reptiles usually retain two centralia, while mammals typically have only one (the navicular).[3] In birds, the tarsus has disappeared, with the proximal tarsals having fused with the tibia, the centralia having disappeared, and the distal bones having fused with the metatarsals to form a single tarsometatarsus bone, effectively giving the leg a third segment[Wikipedia:Tarsus_(skeleton)]
subset: uberon_slim
synonym: "ankle bone" EXACT [FMA:24491]
synonym: "bone of ankle" EXACT [FMA:24491]
synonym: "bone of tarsus" EXACT [FMA:24491]
synonym: "bony tarsus" RELATED [BTO:0002343]
synonym: "hind mesopodium" RELATED [AAO:0000220]
synonym: "ossa tarsalia" EXACT PLURAL [FMA:71339, FMA:TA]
synonym: "ossa tarsi" EXACT PLURAL [FMA:71339, FMA:TA]
synonym: "tarsal" RELATED [BTO:0002343]
synonym: "tarsus osseus" RELATED [BTO:0002343]
xref: BTO:0002343
xref: FMA:24491
xref: GAID:194
xref: galen:TarsalBone
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png
xref: MA:0000297
xref: MESH:A.02.835.232.300.710
xref: ncithesaurus:Tarsal_Bone
xref: SCTID:108372004
is_a: UBERON:0003656 ! mesopodium bone
is_a: UBERON:0005899 ! foot bone
relationship: part_of UBERON:0004454
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0004454 ! tarsal region
relationship: develops_from UBERON:0010541 ! tarsus cartilage condensation
relationship: part_of UBERON:0004454 ! tarsal region
relationship: part_of UBERON:0009879 ! tarsal skeleton
[Term]
id: UBERON:0001448
name: metatarsal bone
def: "The metatarsus or metatarsal bones are a group of five long bones in the foot located between the tarsal bones of the hind- and mid-foot and the phalanges of the toes. Lacking individual names, the metatarsal bones are numbered from the medial side (side of big toe): the first, second, third, fourth, and fifth metatarsal. The metatarsals are analogous to the metacarpal bones of the hand. [WP,unvetted]." [Wikipedia:Metatarsal_bone]
subset: uberon_slim
synonym: "metatarsal" EXACT []
synonym: "ossa metatarsalia" RELATED [BTO:0002347]
synonym: "ossa metatarsi" RELATED [BTO:0002347]
xref: BTO:0002347
xref: FMA:24492
xref: GAID:193
xref: galen:Metatarsal
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MA:0000303
xref: MESH:A.02.835.232.300.492
xref: ncithesaurus:Metatarsal_Bone
xref: SCTID:302532000
is_a: UBERON:0003608 ! hindlimb long bone
is_a: UBERON:0003821 ! metacarpal/metatarsal bone
is_a: UBERON:0005899 ! foot bone
relationship: part_of UBERON:0000983
intersection_of: UBERON:0003821 ! metacarpal/metatarsal bone
intersection_of: part_of UBERON:0000983 ! metatarsus region
relationship: part_of UBERON:0000983 ! metatarsus region
relationship: part_of UBERON:0010545 ! metatarsus skeleton
[Term]
id: UBERON:0001449
name: phalanx of toe
alt_id: UBERON:0004272
def: "A phalanx that is part of a hindlimb autopod[Obol]." [UBERON:cjm]
synonym: "digitus pedis phalanx" EXACT [OBOL:automatic]
synonym: "foot digit phalanx" EXACT [OBOL:automatic]
synonym: "foot phalanx" EXACT [MA:0000305]
synonym: "phalanges of hind digit" RELATED PLURAL [AAO:0000930]
synonym: "phalanx of digit of foot" EXACT [OBOL:automatic]
synonym: "phalanx of digitus pedis" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit" EXACT [OBOL:automatic]
synonym: "phalanx of hind digit" EXACT []
synonym: "phalanx of pes" EXACT []
synonym: "toe phalanx" EXACT [OBOL:automatic]
xref: AAO:0000930
xref: FMA:24493
xref: MA:0000305
xref: ncithesaurus:Foot_Phalanx
xref: ncithesaurus:Phalanx_of_the_Foot
xref: SCTID:302533005
property_value: UBPROP:0000001 "Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that make the five digits of the pes. The terminal phalanges are much smaller than the proximal and penultimate phalanges. The typical phalangeal formula of the pes, in a medial to lateral sequence, is 2(1)-2-3-4(3)-3(2).[AAO]" xsd:string
is_a: UBERON:0003221 ! phalanx
is_a: UBERON:0003608 ! hindlimb long bone
is_a: UBERON:0004248 ! foot digit bone
relationship: part_of UBERON:0002387
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0002387 ! foot
relationship: develops_from UBERON:0010685 ! toe phalanx cartilage condensation
relationship: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0010696 ! skeleton of posterior acropodium
[Term]
id: UBERON:0001450
name: calcaneus
def: "In humans, the calcaneus or heel bone is a bone of the tarsus of the foot which constitute the heel. In some other animals, it is the point of the hock. [WP,unvetted]." [Wikipedia:Calcaneus]
subset: uberon_slim
synonym: "astragalus" RELATED HOMOLOGY [AAO:0000913]
synonym: "calcaneal bone" EXACT [BTO:0002355]
synonym: "calcaneum" EXACT [MA:0001348]
synonym: "fibulare" EXACT [AAO:0000913, ISBN10:0073040584, VSAO:0005016, Wikipedia:Calcaneus]
synonym: "Os calcis" RELATED LATIN [Wikipedia:Calcaneus]
synonym: "os calcis" EXACT [FMA:24496]
synonym: "os tarsi fibulare" RELATED [BTO:0002355]
xref: AAO:0000913
xref: BTO:0002355
xref: EMAPA:18501
xref: EMAPA:19134
xref: FMA:24496
xref: galen:Calcaneum
xref: http://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Subtalar_Joint.PNG/200px-Subtalar_Joint.PNG
xref: MA:0001348
xref: MESH:A.02.835.232.300.710.300
xref: ncithesaurus:Calcaneum
xref: SCTID:182099002
xref: VSAO:0005016
property_value: UBPROP:0000001 "One of two element that constitute the basal row of tarsals. The fibulare constitutes the preaxial element. In salamanders this element is aproximatelly rounded, whereas in anurans it is an elongate, cylindrical bone with the proximal and distal heads fused to the heads of the tibiale.[AAO]" xsd:string
is_a: UBERON:0011679 ! proximal tarsal bone
relationship: connected_to UBERON:0001446 ! fibula
relationship: develops_from UBERON:0010842 ! calcaneum cartilage condensation
[Term]
id: UBERON:0001451
name: navicular bone of foot
def: "The navicular bone is one of the tarsal bones, found in the foot. It is located on the medial side of the foot, and articulates proximally with the talus, distally with the three cuneiform bones, and occasionally laterally with the cuboid[WP]." [Wikipedia:Navicular_bone]
comment: taxon notes: connections vary depending on species. AAO: Oval tarsal element that is located on the center of the mesopodium. It articulates with all other elements of the tarsus except tarsal 5. In humans: there is a cuboid instead of distal tarsal 4 and 5 - may articulate laterally with the cuboid[WP]. TODO - add correct VSAO xref (currently broken)
subset: uberon_slim
synonym: "central tarsal bone" RELATED []
synonym: "centrale" RELATED []
synonym: "centrale (hind)" EXACT [AAO:0000924]
synonym: "navicular" EXACT []
synonym: "navicular of foot" EXACT []
synonym: "os naviculare" EXACT [FMA:24499, FMA:TA]
synonym: "os naviculare" RELATED LATIN [Wikipedia:Navicular_bone]
synonym: "os naviculare pedis" EXACT [BTO:0002356]
xref: AAO:0000924
xref: BTO:0002356
xref: FMA:24499
xref: galen:Navicular
xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Gray276.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray276.png/200px-Gray276.png
xref: MA:0001349
xref: ncithesaurus:Navicular_Bone
xref: OpenCyc:Mx4rv67esJwpEbGdrcN5Y29ycA
xref: SCTID:182100005
property_value: UBPROP:0000001 "Oval tarsal element that is located on the center of the mesopodium. It articulates with all other elements of the tarsus except tarsal 5.[AAO]" xsd:string
is_a: UBERON:0001447 ! tarsal bone
relationship: distally_connected_to UBERON:0010721 {notes="numbers vary"} ! distal tarsal bone
relationship: proximally_connected_to UBERON:0002395 ! talus
[Term]
id: UBERON:0001452
name: distal tarsal bone 1
def: "Endochondral tarsal bone articulating with centralia and metatarsal 1." [VSAO:0005052, Wikipedia:Medial_cuneiform_bone]
subset: uberon_slim
synonym: "cuneiforme 1" EXACT [VSAO:0005052]
synonym: "distal tarsal 1" EXACT [VSAO:0005052]
synonym: "entocuneiforme" EXACT [VSAO:0005052]
synonym: "first cuneiform bone" EXACT [FMA:24518]
synonym: "foot distal carpal bone 1" RELATED []
synonym: "medial cuneiform" EXACT [FMA:24518]
synonym: "medial cuneiform bone" EXACT [FMA:24518]
synonym: "os cuneiforme mediale" EXACT [FMA:TA]
synonym: "os cuneiforme mediale, os cuneiform primum" RELATED LATIN [Wikipedia:Medial_cuneiform_bone]
synonym: "os cuneiforme primum" RELATED [BTO:0002360]
synonym: "ossa cuneiforme mediale" RELATED [BTO:0002360]
synonym: "tarsal 1" EXACT [AAO:0000918]
xref: AAO:0000918
xref: BTO:0002360
xref: FMA:24518
xref: galen:MedialCuneiform
xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Gray290.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray290.png/200px-Gray290.png
xref: MA:0001352
xref: ncithesaurus:Internal_Cuneiform_Bone_of_the_Foot
xref: OpenCyc:Mx4rvYtfH5wpEbGdrcN5Y29ycA
xref: SCTID:182116007
xref: VSAO:0005052
property_value: UBPROP:0000001 "Small element that articulates with the prehallux, metatarsal I and element Y. It may be fused to tarsal 2.[AAO]" xsd:string
is_a: UBERON:0010721 ! distal tarsal bone
relationship: distally_connected_to UBERON:0003650 ! metatarsal bone of digit 1
relationship: proximally_connected_to UBERON:0001451 ! navicular bone of foot
[Term]
id: UBERON:0001453
name: distal tarsal bone 2
def: "Endochondral tarsal bone articulating with centralia and metatarsal 2." [VSAO:0005053, Wikipedia:Intermediate_cuneiform_bone]
comment: The intermediate cuneiform (also known as second cuneiform / middle cuneiform) is shaped like a wedge, the thin end pointing downwards. It is situated between the other two cuneiforms (the medial and lateral cuneiforms), and articulates with the navicular posteriorly, the second metatarsal anteriorly and with the other cuneiforms on either side. [WP,unvetted]
subset: uberon_slim
synonym: "cuneiforme 2" EXACT [VSAO:0005053]
synonym: "distal tarsal 2" EXACT [VSAO:0005053]
synonym: "foot distal carpal bone 2" RELATED []
synonym: "intermediate cuneiform" EXACT []
synonym: "mesocuneiforme" EXACT [VSAO:0005053]
synonym: "middle cuneiform" EXACT []
synonym: "os cuneiforme intermedium" RELATED [BTO:0002359]
synonym: "os cuneiforme intermedium, os cuneiforme secundum" RELATED LATIN [Wikipedia:Intermediate_cuneiform_bone]
synonym: "os cuneiforme secundum" RELATED [BTO:0002359]
synonym: "second cuneiform bone" EXACT []
synonym: "second cuneiform bone of foot" EXACT []
synonym: "tarsal 2" EXACT [AAO:0000919]
xref: AAO:0000919
xref: BTO:0002359
xref: FMA:24519
xref: galen:IntermediateCuneiform
xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MA:0001353
xref: SCTID:179512006
xref: VSAO:0005053
property_value: UBPROP:0000001 "Small element that articulates anteriorly with metatarsal II. It may be fused to tarsal 1 or to tarsal 3.[AAO]" xsd:string
is_a: UBERON:0010721 ! distal tarsal bone
relationship: distally_connected_to UBERON:0003651 ! metatarsal bone of digit 2
relationship: proximally_connected_to UBERON:0001451 ! navicular bone of foot
[Term]
id: UBERON:0001454
name: distal tarsal bone 3
def: "Endochondral tarsal bone articulating with centralia and metatarsal 3." [VSAO:0005054, Wikipedia:Lateral_cuneiform_bone]
comment: The lateral cuneiform (also known as third cuneiform / external cuneiform) intermediate in size between the other two cuneiform bones, is also wedge-shaped, the base being uppermost. It occupies the center of the front row of the tarsal bones, between the second cuneiform medially, the cuboid laterally, the navicular posteriorly and the third metatarsal in front. [WP,unvetted]
subset: uberon_slim
synonym: "cuneiforme 3" EXACT [VSAO:0005054]
synonym: "distal tarsal 3" EXACT [VSAO:0005054]
synonym: "ectocuneiforme" EXACT [VSAO:0005054]
synonym: "foor distal carpal bone 3" RELATED []
synonym: "lateral cuneiform" EXACT []
synonym: "lateral cuneiform bone" EXACT [FMA:24520]
synonym: "os cuneiforme laterale" RELATED [BTO:0002358]
synonym: "os cuneiforme laterale, os cuneiforme tertium" RELATED LATIN [Wikipedia:Lateral_cuneiform_bone]
synonym: "os cuneiforme tertium" RELATED [BTO:0002358]
synonym: "ossa cuneiforme laterale" RELATED [BTO:0002358]
synonym: "tarsal 3" EXACT [AAO:0000920]
synonym: "third cuneiform bone" EXACT []
xref: AAO:0000920
xref: BTO:0002358
xref: FMA:24520
xref: galen:LateralCuneiform
xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MA:0001354
xref: OpenCyc:Mx4rvoLPu5wpEbGdrcN5Y29ycA
xref: SCTID:182117003
xref: VSAO:0005054
property_value: UBPROP:0000001 "Small element that articulates anteriorly with metatarsal III. It may be fused to tarsal 2.[AAO]" xsd:string
is_a: UBERON:0010721 ! distal tarsal bone
relationship: distally_connected_to UBERON:0003652 ! metatarsal bone of digit 3
relationship: proximally_connected_to UBERON:0001451 ! navicular bone of foot
[Term]
id: UBERON:0001455
name: cuboid bone
def: "A tarsal bone that is formed from distal tarsals 4 and 5. In the human body, the cuboid bone is one of the seven tarsal bones of the foot. [WP,modified]." [Wikipedia:Cuboid_bone]
subset: uberon_slim
synonym: "cuboid" EXACT []
synonym: "cuboideum" EXACT []
synonym: "foot distal carpal bone 4 and 5" RELATED []
synonym: "os cuboideum" EXACT [BTO:0002357]
synonym: "os cuboideum" RELATED LATIN [Wikipedia:Cuboid_bone]
xref: BTO:0002357
xref: FMA:24527
xref: galen:Cuboid
xref: http://upload.wikimedia.org/wikipedia/commons/1/18/Gray274.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/18/Gray274.png/200px-Gray274.png
xref: MA:0001355
xref: ncithesaurus:Cuboid_Bone
xref: SCTID:182101009
is_a: UBERON:0010721 ! distal tarsal bone
[Term]
id: UBERON:0001456
name: face
def: "Subdivision of head which consists of the facial skeleton and all layers superficial to it[FMA,modified]." [FMA:24728, Wikipedia:Face]
comment: The face develops from outward growth of tissue located rostral to the cranium & pharynx. The lower jaw and most of the upper jaw are formed by growth of the first pharyngeal (branchial) arch. The upper incisor region and the nose and forehead (frontal region) are formed from tissue located rostral to the neural tube (frontonasal prominence)[vanat.cvm.umn.edu/TFFlectPDFs/LectFaceDevelop.pdf]
subset: uberon_slim
synonym: "facia/facies" RELATED LATIN [Wikipedia:Face]
synonym: "visage" RELATED [BTO:0003369]
xref: BTO:0003369
xref: FMA:24728
xref: GAID:64
xref: galen:Face
xref: HAO:0000316
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Mona_Lisa_headcrop.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Mona_Lisa_headcrop.jpg/200px-Mona_Lisa_headcrop.jpg
xref: MA:0002473
xref: MESH:A.01.456.505
xref: ncithesaurus:Face
xref: OpenCyc:Mx4rvVi5GZwpEbGdrcN5Y29ycA
xref: SCTID:302549007
is_a: UBERON:0001444 ! subdivision of head
[Term]
id: UBERON:0001457
name: skin of eyelid
def: "A zone of skin that is part of a eyelid [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "blepharon zone of skin" EXACT [OBOL:automatic]
synonym: "eyelid skin" EXACT []
synonym: "eyelid zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of blepharon" EXACT [OBOL:automatic]
synonym: "zone of skin of eyelid" EXACT [OBOL:automatic]
xref: FMA:24760
xref: MA:0001256
xref: ncithesaurus:Eyelid_Skin
xref: SCTID:245947005
is_a: UBERON:1000021 ! skin of face
relationship: part_of UBERON:0001711
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001711 ! eyelid
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001458
name: skin of lip
def: "A zone of skin that is part of a lip [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "lip skin" EXACT []
synonym: "lip zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of lip" EXACT [OBOL:automatic]
xref: FMA:24764
xref: MA:0001579
xref: ncithesaurus:Skin_of_the_Lip
xref: SCTID:244092005
is_a: UBERON:0001084 ! skin of head
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001833
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001833 ! lip
relationship: part_of UBERON:0001833 ! lip
[Term]
id: UBERON:0001459
name: skin of external ear
def: "A zone of skin that is part of a external ear [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "auricular region of head zone of skin" EXACT [OBOL:automatic]
synonym: "auricular region zone of skin" EXACT [OBOL:automatic]
synonym: "ear skin" EXACT []
synonym: "external ear skin" EXACT []
synonym: "external ear zone of skin" EXACT [OBOL:automatic]
synonym: "outer ear zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of auricular region" EXACT [OBOL:automatic]
synonym: "zone of skin of auricular region of head" EXACT [OBOL:automatic]
synonym: "zone of skin of external ear" EXACT [OBOL:automatic]
synonym: "zone of skin of outer ear" EXACT [OBOL:automatic]
xref: FMA:24775
xref: MA:0001233
xref: ncithesaurus:Ear_Skin
xref: SCTID:244073008
is_a: UBERON:0001084 ! skin of head
relationship: part_of UBERON:0001691
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001691 ! external ear
relationship: part_of UBERON:0001691 ! external ear
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0001460
name: arm
def: "The part of the forelimb extending from the shoulder to the autopod[cjm]." [Wikipedia:Arm]
comment: This class refers to the combination of the stylopod and zeugopod of a forelimb. Sometimes (cf FMA), 'arm' denotes the stylopod only; sometimes (cf MA), 'arm' denotes the part of the forelimb covering both (i.e. shoulder to hand). Also note distinction between arm and forelimb: hand is part of forelimb, but not part of arm. Editor note: currently declared as overlapping hand, as AOs disagree over whether some wrist parts are in the arm or hand
subset: uberon_slim
synonym: "brachium" RELATED LATIN [Wikipedia:Arm]
synonym: "upper extremity" RELATED [MESH:A.01.378.800]
xref: BTO:0001435
xref: EFO:0001410
xref: EHDAA2:0000140
xref: EHDAA:4164
xref: EHDAA:6210
xref: EHDAA:8275
xref: EMAPA:17413
xref: GAID:52
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Upperarm.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Upperarm.jpg/200px-Upperarm.jpg
xref: MA:0000033
xref: MESH:A.01.378.800
xref: MESH:A.01.378.800.075
xref: OpenCyc:Mx4rvVjp5ZwpEbGdrcN5Y29ycA
xref: VHOG:0000339
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006058 ! multi-limb segment region
relationship: distally_connected_to UBERON:0002398 ! hand
relationship: part_of UBERON:0002102 ! forelimb
relationship: proximally_connected_to UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001461
name: elbow
def: "The elbow is the region surrounding the elbow-joint—the ginglymus or hinge joint in the middle of the arm. Three bones form the elbow joint: the humerus of the upper arm, and the paired radius and ulna of the forearm. The bony prominence at the very tip of the elbow is the olecranon process of the ulna, and the inner aspect of the elbow is called the antecubital fossa. [WP,unvetted,human-specific]." [Wikipedia:Elbow]
comment: Naming conventions for pod terms under discussion within phenoscape group
subset: uberon_slim
synonym: "articulatio cubiti" RELATED LATIN [Wikipedia:Elbow]
synonym: "cubital region" EXACT []
synonym: "elbow limb segment" EXACT []
synonym: "elbow region" EXACT []
xref: EFO:0003069
xref: EHDAA2:0000429
xref: EHDAA:4166
xref: EHDAA:6212
xref: EMAPA:17414
xref: FMA:24901
xref: GAID:54
xref: galen:Elbow
xref: http://upload.wikimedia.org/wikipedia/commons/5/5c/Elbow_coude.JPG
xref: MA:0000036
xref: MESH:A.01.378.800.420
xref: OpenCyc:Mx4rvVjjNZwpEbGdrcN5Y29ycA
xref: SCTID:76248009
xref: VHOG:0000340
is_a: UBERON:0008785 ! upper limb segment
relationship: part_of UBERON:0001460 {source="EHDAA2"} ! arm
[Term]
id: UBERON:0001463
name: hand digit 1
def: "1st (lateral-most) digit of the fore autopod[Wikipedia]." [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264, Wikipedia:Thumb]
subset: uberon_slim
synonym: "alula" NARROW SENSU [Wikipedia:Alula]
synonym: "digit 1 of fore-paw" EXACT [EMAPA:17429]
synonym: "digitus 1" EXACT []
synonym: "digitus primus" EXACT []
synonym: "finger 1" EXACT [EHDAA2:0000511]
synonym: "first digit of hand" EXACT []
synonym: "fore digit I" EXACT [AAO:0010639]
synonym: "pollex" EXACT []
synonym: "pollex, digitus primus, digitus I" RELATED LATIN [Wikipedia:Thumb]
synonym: "pollex; digitus primus [I]" EXACT []
synonym: "thumb" NARROW SENSU []
xref: AAO:0010639
xref: EHDAA2:0000511
xref: EMAPA:17429
xref: FMA:24938
xref: GAID:58
xref: http://upload.wikimedia.org/wikipedia/commons/2/2c/Thumbs_up.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Thumb-up.jpg/200px-Thumb-up.jpg
xref: MA:0000454
xref: MESH:A.01.378.800.667.430.705
xref: ncithesaurus:Hand_Digit_1
xref: OpenCyc:Mx4rvVjVbpwpEbGdrcN5Y29ycA
xref: SCTID:302540006
is_a: UBERON:0002389 ! hand digit
is_a: UBERON:0006048 ! digit 1
relationship: part_of UBERON:0002398
intersection_of: UBERON:0006048 ! digit 1
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001464
name: hip
def: "The hip region is located lateral to the gluteal region (i.e. the buttock), inferior to the iliac crest, and overlying the greater trochanter of the thigh bone. In adults, three of the bones of the pelvis have fused into the hip bone which forms part of the hip region. The hip joint, scientifically referred to as the acetabulofemoral joint (art. coxae), is the joint between the femur and acetabulum of the pelvis and its primary function is to support the weight of the body in both static (e.g. standing) and dynamic (e.g. walking or running) postures. [WP,modified]." [Wikipedia:Hip]
comment: AO notes. See notes for shoulder. in BTO this is part of the abdomen - this creates an inconsistency if limb and abdomen are spatially disjoint
subset: uberon_slim
synonym: "coxa" RELATED LATIN [Wikipedia:Hip]
synonym: "hip region" EXACT [FMA:24964]
synonym: "regio coxae" EXACT [FMA:24964]
xref: BTO:0001457
xref: EFO:0001929
xref: EHDAA2:0000783
xref: EHDAA:5153
xref: EHDAA:6178
xref: EMAPA:17490
xref: FMA:24964
xref: GAID:47
xref: galen:Hip
xref: http://upload.wikimedia.org/wikipedia/commons/9/9f/Hip.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9f/Hip.jpg/200px-Hip.jpg
xref: MA:0000045
xref: MESH:A.01.378.610.400
xref: ncithesaurus:Hip
xref: OpenCyc:Mx4rvVjhy5wpEbGdrcN5Y29ycA
xref: SCTID:302543008
xref: VHOG:0000346
is_a: UBERON:0000475 ! organism subdivision
relationship: overlaps UBERON:0001271 {source="FMA-modified"} ! pelvic girdle region
relationship: part_of UBERON:0010709 ! pelvic complex
[Term]
id: UBERON:0001465
name: knee
def: "A segment of the hindlimb that corresponds to the joint connecting a hindlimb stylopod and zeugopod." [UBERON:cjm]
subset: uberon_slim
synonym: "knee region" EXACT []
xref: BTO:0003595
xref: EFO:0001957
xref: EHDAA2:0000895
xref: EHDAA:5159
xref: EHDAA:6184
xref: EMAPA:17493
xref: FMA:24974
xref: GAID:48
xref: galen:Knee
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Male_Knee_by_David_Shankbone.jpg/200px-Male_Knee_by_David_Shankbone.jpg
xref: MA:0000046
xref: MESH:A.01.378.610.450
xref: OpenCyc:Mx4rvVjPKZwpEbGdrcN5Y29ycA
xref: SCTID:361291001
xref: VHOG:0000347
is_a: UBERON:0008784 ! lower limb segment
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001466
name: foot digit
alt_id: UBERON:0000027
def: "A digit that is part_of a hindlimb[Obol]." [Wikipedia:Toe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "digit of foot" EXACT []
synonym: "digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "digiti pedis" EXACT PLURAL [FMA:70664, FMA:TA]
synonym: "digiti pedis" RELATED LATIN [Wikipedia:Toe]
synonym: "digitipedis" RELATED [BTO:0002348]
synonym: "digitus pedis" EXACT []
synonym: "hind digit" EXACT [XAO:0003035]
synonym: "hind_digit" EXACT [AAO:0000888]
synonym: "hindlimb digit" EXACT []
synonym: "toe" EXACT [FMA:25046]
xref: AAO:0000888
xref: BTO:0002348
xref: FMA:25046
xref: GAID:44
xref: galen:Toe
xref: http://upload.wikimedia.org/wikipedia/commons/5/5e/Toes.jpg
xref: MA:0000048
xref: ncithesaurus:Toe
xref: OpenCyc:Mx4rvVjCHZwpEbGdrcN5Y29ycA
xref: SCTID:116667001
xref: XAO:0003035
property_value: UBPROP:0000001 "One of the toes of the pes.[AAO]" xsd:string
is_a: UBERON:0002544 ! digit
is_a: UBERON:0008784 ! lower limb segment
relationship: part_of UBERON:0002387
intersection_of: UBERON:0002544 ! digit
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001467
name: shoulder
def: "In human anatomy, the shoulder joint comprises the part of the body where the humerus attaches to the scapula. The shoulder refers to the group of structures in the region of the joint. It is made up of three bones: the clavicle (collarbone), the scapula (shoulder blade), and the humerus (upper arm bone) as well as associated muscles, ligaments and tendons. The articulations between the bones of the shoulder make up the shoulder joints. There are two kinds of cartilage in the joint. The first type is the white cartilage on the ends of the bones (called articular cartilage) which allows the bones to glide and move on each other. When this type of cartilage starts to wear out (a process called arthritis), the joint becomes painful and stiff. The labrum is a second kind of cartilage in the shoulder which is distinctly different from the articular cartilage. This cartilage is more fibrous or rigid than the cartilage on the ends of the ball and socket. Also, this cartilage is also found only around the socket where it is attached. The shoulder must be flexible for the wide range of motion required in the arms and hands and also strong enough to allow for actions such as lifting, pushing and pulling. The compromise between these two functions results in a large number of shoulder problems not faced by other joints such as the hip. [WP,unvetted]." [Wikipedia:Shoulder]
comment: AO notes: In FMA, the shoulder is part of the pectoral girdle region. in MA, shoulder structures like shoulder joints, bones, nerves etc are part of the shoulder and the forelimb. E.g. humerus is a shoulder bone
subset: uberon_slim
synonym: "articulatio humeri" RELATED LATIN [Wikipedia:Shoulder]
synonym: "shoulder region" EXACT []
xref: EFO:0003068
xref: EHDAA2:0001834
xref: EHDAA:4180
xref: EHDAA:6228
xref: EMAPA:17421
xref: FMA:25202
xref: GAID:60
xref: galen:Shoulder
xref: http://upload.wikimedia.org/wikipedia/commons/9/90/Shoulderjoint.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/90/Shoulderjoint.PNG/200px-Shoulderjoint.PNG
xref: MA:0000038
xref: MESH:A.01.378.800.750
xref: ncithesaurus:Shoulder
xref: OpenCyc:Mx4rvViCM5wpEbGdrcN5Y29ycA
xref: SCTID:361103004
xref: VHOG:0000342
is_a: UBERON:0000475 ! organism subdivision
relationship: overlaps UBERON:0001421 {source="FMA-modified"} ! pectoral girdle region
relationship: part_of UBERON:0010708 ! pectoral complex
[Term]
id: UBERON:0001468
name: intervertebral joint
def: "The joint between adjacent vertebral bodies. May be composed of the nucleus pulposus, annular ligament, and the anterior and posterior longitudinal ligaments." [http://www.medilexicon.com/medicaldictionary.php?t=87401]
comment: AO notes: FMA has 'intervertebral joint' as a GAT, and has two distinct classes 'intervertebral symphysis' and 'intervertebral syndesmosis', but note that the latter do not connect the centra
synonym: "inter-centrum joint" EXACT []
synonym: "inter-vertebral joint" EXACT []
synonym: "intervertebral symphysis" EXACT [FMA:25511]
synonym: "joint of vertebral body" EXACT [FMA:25511]
synonym: "vertebral joint" BROAD []
xref: FMA:25511
xref: MA:0001514
xref: ncithesaurus:Vertebral_Joint
xref: SCTID:244512000
is_a: UBERON:0002216 {source="FMA"} ! symphysis
relationship: connects UBERON:0001075 {cardinality="2"} ! body of vertebra
relationship: connects UBERON:0001075 {notes="connects successive pairs of centra"} ! body of vertebra
relationship: part_of UBERON:0001130 {source="FMA"} ! vertebral column
[Term]
id: UBERON:0001469
name: sternoclavicular joint
def: "The sternoclavicular articulation is a double arthrodial joint composed of two portions separated by an articular disc. The parts entering into its formation are the sternal end of the clavicle, the upper and lateral part of the manubrium sterni, and the cartilage of the first rib, visible from the outside as the suprasternal notch. The articular surface of the clavicle is much larger than that of the sternum, and is invested with a layer of cartilage, which is considerably thicker than that on the latter bone. The ligaments of this joint are: Articular capsule Anterior sternoclavicular ligament Posterior sternoclavicular ligament Interclavicular ligament Costoclavicular ligament Articular disk [WP,unvetted]." [Wikipedia:Sternoclavicular_articulation]
subset: uberon_slim
synonym: "articulatio sternoclavicularis" RELATED LATIN [Wikipedia:Sternoclavicular_articulation]
synonym: "sterno clavicular joint" EXACT []
synonym: "sternoclavicular" BROAD [Wikipedia:Sternoclavicular_articulation]
synonym: "sternoclavicular articulation" EXACT [Wikipedia:Sternoclavicular_articulation]
xref: EMAPA:19203
xref: FMA:25883
xref: GAID:270
xref: http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray325.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Gray325.png/200px-Gray325.png
xref: MA:0001507
xref: MESH:A.02.835.583.781
xref: ncithesaurus:Sternoclavicular_Joint
xref: OpenCyc:Mx4rv_eLJZwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rwI-ZZpwpEbGdrcN5Y29ycA
xref: SCTID:182165002
is_a: UBERON:0011108 {source="FMA"} ! synovial joint of pectoral girdle
relationship: connects UBERON:0000975
relationship: connects UBERON:0001105
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0000975 ! sternum
intersection_of: connects UBERON:0001105 ! clavicle
relationship: connects UBERON:0000975 ! sternum
relationship: connects UBERON:0000975 {notes="clavicular notch of the manubrium sterni"} ! sternum
relationship: connects UBERON:0001105 ! clavicle
relationship: connects UBERON:0001105 {notes="sternal end of the clavicle and first rib"} ! clavicle
[Term]
id: UBERON:0001470
name: glenohumeral joint
def: "The glenohumeral joint, commonly known as the shoulder joint, is a multiaxial synovial ball and socket joint and involves articulation between the glenoid fossa of the scapula (shoulder blade) and the head of the humerus (upper arm bone). [WP,unvetted]." [Wikipedia:Glenohumeral_joint]
comment: AO notes: in FMA, this is part of the bony pectoral girdle, alongside the skeleton of pectoral girdle. Editor notes: note that in this ontology 'glenoid fossa' is a cavity (consistent with FMA) - consider adding a class for the surface of the scapula that is adjacent to this cavity, and making a more explicit connects relationship
subset: uberon_slim
synonym: "articulatio humeri" EXACT [FMA:25912, FMA:TA]
synonym: "articulatio humeri" RELATED LATIN [Wikipedia:Glenohumeral_joint]
synonym: "humeral joint" EXACT [FMA:25912]
synonym: "humeroscapular joint" RELATED [Wikipedia:Glenohumeral_joint]
synonym: "joint of shoulder" EXACT [OBOL:automatic]
synonym: "shoulder joint" EXACT [MA:0000459]
xref: EMAPA:19105
xref: FMA:25912
xref: GAID:269
xref: galen:ShoulderJoint
xref: http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray327.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray327.png/200px-Gray327.png
xref: MA:0000459
xref: MESH:A.02.835.583.748
xref: ncithesaurus:Shoulder_Joint
xref: OpenCyc:Mx4rwP32BZwpEbGdrcN5Y29ycA
xref: SCTID:182168000
xref: VHOG:0001002
is_a: UBERON:0000982 ! skeletal joint
relationship: connects UBERON:0000976
relationship: connects UBERON:0006849
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0000976 ! humerus
intersection_of: connects UBERON:0006849 ! scapula
relationship: adjacent_to UBERON:0006657 ! glenoid fossa
relationship: connects UBERON:0000976 ! humerus
relationship: connects UBERON:0006849 ! scapula
relationship: develops_from UBERON:0006292 {evidence="definitional"} ! shoulder joint primordium
relationship: part_of UBERON:0001467 {source="FMA", source="MA"} ! shoulder
[Term]
id: UBERON:0001471
name: skin of prepuce of penis
def: "A zone of skin that is part of a prepuce of penis [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "foreskin of penis" EXACT []
synonym: "foreskin zone of skin" EXACT [OBOL:automatic]
synonym: "penile prepuce zone of skin" EXACT [OBOL:automatic]
synonym: "penis foreskin" EXACT []
synonym: "prepuce of penis zone of skin" EXACT [OBOL:automatic]
synonym: "prepuce zone of skin" EXACT [OBOL:automatic]
synonym: "preputial skin" EXACT []
synonym: "zone of skin of foreskin" EXACT [OBOL:automatic]
synonym: "zone of skin of penile prepuce" EXACT [OBOL:automatic]
synonym: "zone of skin of prepuce" EXACT [OBOL:automatic]
synonym: "zone of skin of prepuce of penis" EXACT [OBOL:automatic]
xref: EV:0100109
xref: FMA:27648
xref: MA:0001744
xref: SCTID:39059001
xref: VHOG:0001342
is_a: UBERON:0001331 ! skin of penis
relationship: part_of UBERON:0001332
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001332 ! prepuce of penis
relationship: part_of UBERON:0001332 ! prepuce of penis
[Term]
id: UBERON:0001472
name: vaginal venous plexus
def: "The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]." [Wikipedia:Vaginal_venous_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "plexus venosus vaginalis" RELATED LATIN [Wikipedia:Vaginal_venous_plexus]
synonym: "venous vaginal plexus" EXACT []
xref: FMA:29713
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Gray589.png/200px-Gray589.png
xref: MA:0002257
xref: SCTID:294653003
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001593 ! venous plexus
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006876 ! vasculature of organ
relationship: part_of UBERON:0000996
intersection_of: UBERON:0001593 ! venous plexus
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0001473
name: lymphatic vessel
def: "A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure[BTO]." [BTO:0000752, Wikipedia:Lymphatic_vessel]
subset: uberon_slim
subset: vertebrate_core
synonym: "lymph vessel" EXACT []
synonym: "vas lymphaticum" RELATED LATIN [Wikipedia:Lymphatic_vessel]
xref: AAO:0011005
xref: BTO:0000752
xref: EFO:0000873
xref: FMA:30315
xref: http://upload.wikimedia.org/wikipedia/commons/4/44/Illu_lymph_capillary.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Illu_lymph_capillary.jpg/200px-Illu_lymph_capillary.jpg
xref: MA:0000138
xref: MAT:0000443
xref: ncithesaurus:Lymphatic_Vessel
xref: OpenCyc:Mx4rwA1fYZwpEbGdrcN5Y29ycA
xref: SCTID:279089004
xref: TAO:0005105
xref: VHOG:0001249
xref: XAO:0000375
property_value: UBPROP:0000001 "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep.[TAO]" xsd:string
property_value: UBPROP:0000001 "A vessel that contains or conveys lymph.[AAO]" xsd:string
is_a: UBERON:0000055 ! vessel
disjoint_from: UBERON:0001981 ! blood vessel
relationship: has_part UBERON:0002391 ! lymph
relationship: part_of UBERON:0004536 ! lymph vasculature
relationship: part_of UBERON:0006558 ! lymphatic part of lymphoid system
[Term]
id: UBERON:0001474
name: bone
def: "Skeletal element that is composed of bone tissue[VSAO]." [VSAO:0000057, Wikipedia:Bone]
comment: Alternate definition: Organ with cavitated organ parts, which primarily consists of compact (cortical) and cancellous bone, which surround bone marrow cavities; together with other bones, cartilages and joints, it constitutes the skeletal system. Examples: femur, sternum, maxilla, vertebra, talus[FMA]
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "bone element" EXACT [VSAO:0000057]
synonym: "bone organ" EXACT []
xref: AAO:0000047
xref: AEO:0000082
xref: BTO:0000140
xref: EFO:0000298
xref: EHDAA2:0003082
xref: ENVO:00002039
xref: EV:0100140
xref: FMA:30317
xref: FMA:5018
xref: GAID:92
xref: galen:Bone
xref: MA:0001459
xref: MAT:0000299
xref: MIAA:0000299
xref: ncithesaurus:Bone
xref: OpenCyc:Mx4rvViDlpwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvVkCG5wpEbGdrcN5Y29ycA
xref: SCTID:272673000
xref: TAO:0001514
xref: VHOG:0001190
xref: VSAO:0000057
xref: XAO:0000169
xref: ZFA:0001514
property_value: "spatially_disjoint_from" UBERON:0001015
property_value: "spatially_disjoint_from" UBERON:0001630
property_value: "spatially_disjoint_from" UBERON:0002385
property_value: UBPROP:0000001 "Also called osseous tissue, (Latin: os). Is a type of hard endoskeletal connective tissue found in many vertebrate animals. Bone is the main tissue of body organs that support body structures, protect internal organs, (in conjunction with muscles) facilitate movement; and are involved with cell formation, calcium metabolism, and mineral storage.[AAO]" xsd:string
property_value: UBPROP:0000001 "Portion of tissue which is calcified connective tissue making up the structural elements of the skeletal system.[TAO]" xsd:string
property_value: UBPROP:0000001 "Skeletal element that is composed of bone tissue.[VSAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO]" xsd:string
is_a: UBERON:0004765 ! skeletal element
disjoint_from: UBERON:0001630 ! muscle organ
disjoint_from: UBERON:0005090 ! muscle structure
disjoint_from: UBERON:0010538 ! limb/fin segment
relationship: has_part UBERON:0002481 {source="VSAO"} ! bone tissue
relationship: part_of UBERON:0001434 ! skeletal system
[Term]
id: UBERON:0001475
name: ligament
comment: made obsolete as it incorrectly grouped classes
is_obsolete: true
consider: UBERON:0000211
consider: UBERON:0002360
[Term]
id: UBERON:0001476
name: deltoid
def: "A muscle of shoulder which attaches to the scapula, clavicle and humerus.[FMA]" [Wikipedia:Deltoid_muscle]
comment: We use a generic definition that includes the deltoideus as represented in AAO: 'Muscle which originates as three heads, the pars externalis, pars clavicularis, and pars scapularis. The pars externalis originates from the lateral border of the omosternum and inserts on the distal portion of the humerus. The pars clavicularis originates from the ventro-lateral surface of the clavicle and inserts on the deltoid crest of the humerus. The pars scapularis originates from the lateral surface of the clavicle and inserts on the deltoid crest of the humerus'.
subset: uberon_slim
synonym: "common shoulder muscle" RELATED [Wikipedia:Deltoid_muscle]
synonym: "deltoid muscle" EXACT [Wikipedia:Deltoid_muscle]
synonym: "deltoideus" RELATED [Wikipedia:Deltoid_muscle]
synonym: "deltoideus muscle" RELATED [Wikipedia:Deltoid_muscle]
synonym: "m. deltoideus" EXACT [AAO:0010716]
synonym: "musculus deltoideus" EXACT [Wikipedia:Deltoid_muscle]
synonym: "musculus deltoideus" RELATED LATIN [Wikipedia:Deltoid_muscle]
xref: AAO:0010716
xref: EFO:0001412
xref: EHDAA2:0000339
xref: EMAPA:18177
xref: FMA:32521
xref: http://upload.wikimedia.org/wikipedia/commons/9/93/Deltoideus.png
xref: MA:0002286
xref: ncithesaurus:Deltoid
xref: OpenCyc:Mx4rvVjdc5wpEbGdrcN5Y29ycA
xref: SCTID:181620007
xref: VHOG:0000846
property_value: UBPROP:0000001 "Muscle which originates as three heads, the pars externalis, pars clavicularis, and pars scapularis. The pars externalis originates from the lateral border of the omosternum and inserts on the distal portion of the humerus. The pars clavicularis originates from the ventro-lateral surface of the clavicle and inserts on the deltoid crest of the humerus. The pars scapularis originates from the lateral surface of the clavicle and inserts on the deltoid crest of the humerus.[AAO]" xsd:string
is_a: UBERON:0001482 {source="FMA"} ! muscle of shoulder
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: attaches_to UBERON:0000976
relationship: attaches_to UBERON:0001105
relationship: attaches_to UBERON:0006849
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: attaches_to UBERON:0000976 ! humerus
intersection_of: attaches_to UBERON:0001105 ! clavicle
intersection_of: attaches_to UBERON:0006849 ! scapula
relationship: attaches_to UBERON:0000976 ! humerus
relationship: attaches_to UBERON:0001105 ! clavicle
relationship: attaches_to UBERON:0002498 {source="FMA"} ! deltoid tuberosity of humerus
relationship: attaches_to UBERON:0006849 ! scapula
relationship: composed_primarily_of UBERON:0002036 {source="EHDAA2"} ! striated muscle tissue
relationship: develops_from UBERON:0006219 {source="EHDAA2"} ! deltoid pre-muscle mass
relationship: has_muscle_antagonist UBERON:0001112 {source="dbpedia"} ! latissimus dorsi muscle
relationship: has_muscle_insertion UBERON:0002498 {notes="deltoid tuberosity of humerus", source="dbpedia"} ! deltoid tuberosity of humerus
relationship: has_muscle_nerve UBERON:0001493 {source="dbpedia"} ! axillary nerve
relationship: has_muscle_origin UBERON:0001105 {notes="the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula", source="dbpedia"} ! clavicle
relationship: has_muscle_origin UBERON:0001124 {notes="the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula", source="dbpedia"} ! pectoral limb scapula
relationship: has_muscle_origin UBERON:0002497 {notes="the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula", source="dbpedia"} ! acromion
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle
[Term]
id: UBERON:0001477
name: infraspinatus muscle
def: "The Infraspinatus muscle is a thick triangular muscle, which occupies the chief part of the infraspinatous fossa. The infraspinatus is a muscle of the rotator cuff. [WP,unvetted]." [Wikipedia:Infraspinatus_muscle]
comment: Taxon notes: The pectoral muscles — the pectoralis major and pectoralis minor — evolved from a primitive muscle sheet that connected the coracoid to the humerus. In late reptilians and early mammals, this muscle structure was displaced dorsally; while most of its components evolved into the pectoralis major, some fibers eventually attached to the scapula and evolved into the supraspinatus, the infraspinatus, and parts of the subscapularis.[WP]
subset: uberon_slim
synonym: "infraspinatus" EXACT []
synonym: "musculus infraspinatus" RELATED LATIN [Wikipedia:Infraspinatus_muscle]
xref: EHDAA2:0000826
xref: EHDAA:8305
xref: EMAPA:18526
xref: FMA:32546
xref: http://upload.wikimedia.org/wikipedia/commons/9/99/Arm_muscles_back_numbers.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png
xref: MA:0002323
xref: ncithesaurus:Infraspinatus
xref: OpenCyc:Mx4rwVT4_ZwpEbGdrcN5Y29ycA
xref: SCTID:277439009
xref: VHOG:0000921
is_a: UBERON:0001482 ! muscle of shoulder
relationship: has_muscle_insertion UBERON:0011187 {source="dbpedia", notes="middle facet of greater tubercle of the humerus"} ! greater tubercle of humerus
relationship: has_muscle_origin UBERON:0006849 {source="dbpedia", notes="infraspinous fossa of the scapula"} ! scapula
relationship: part_of UBERON:0003683 {source="Wikipedia"} ! rotator cuff
[Term]
id: UBERON:0001478
name: teres major muscle
def: "Teres major is a muscle of the upper limb and one of six scapulohumeral muscles. It is a thick but somewhat flattened muscle. [WP,unvetted]." [Wikipedia:Teres_major_muscle]
subset: uberon_slim
synonym: "musculus teres major" RELATED LATIN [Wikipedia:Teres_major_muscle]
synonym: "teres major" EXACT [MA:0002392]
xref: EHDAA2:0002004
xref: EHDAA:8321
xref: EMAPA:19069
xref: EMAPA:19110
xref: FMA:32549
xref: http://upload.wikimedia.org/wikipedia/commons/9/99/Arm_muscles_back_numbers.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png
xref: MA:0002392
xref: ncithesaurus:Teres_Major_Muscle
xref: OpenCyc:Mx4rwJZqBJwpEbGdrcN5Y29ycA
xref: SCTID:277444002
xref: VHOG:0000750
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010467 ! teres muscle
relationship: develops_from UBERON:0010988 {source="EHDAA2"} ! teres major pre-muscle mass
relationship: has_muscle_insertion UBERON:0000976 {notes="medial lip of the intertubercular sulcus of the humerus", source="dbpedia"} ! humerus
relationship: has_muscle_origin UBERON:0007175 {source="dbpedia", notes="posterior aspect of the inferior angle of the scapula"} ! inferior angle of scapula
[Term]
id: UBERON:0001479
name: sesamoid bone
def: "Ossicle that develops within bands of dense, regular connective tissue (e.g., tendons and ligaments). Sesamoids are generally located proximate to a bony prominence, over which the dense regular connective tissue wraps, and/or a joint or articulation." [VSAO:0000137, Wikipedia:Sesamoid_bone]
comment: Sesamoids are often endochondral replacement elements and in addition to bone tissue, may also be composed of articular cartilage, fibrocartilage, hyaline cartilage, and calcified cartilage.[VSAO]
subset: uberon_slim
synonym: "ossa sesamoidea" RELATED LATIN [Wikipedia:Sesamoid_bone]
synonym: "sesamoid" EXACT [VSAO:0000137]
xref: AEO:0000086
xref: EHDAA2:0003086
xref: FMA:32672
xref: GAID:210
xref: galen:SessamoidBone
xref: http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray350.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray350.png/200px-Gray350.png
xref: MA:0001375
xref: MESH:A.02.835.232.730
xref: ncithesaurus:Sesamoid_Bone
xref: SCTID:362914002
xref: VSAO:0000137
is_a: UBERON:0010911 {source="VSAO"} ! ossicle
relationship: develops_in UBERON:0007846 {source="VSAO"} ! dense regular collagenous tissue
[Term]
id: UBERON:0001480
name: proximal carpal bone
xref: FMA:33302
xref: MA:0002557
xref: SCTID:306715004
is_a: UBERON:0001435 ! carpal bone
relationship: proximally_connected_to UBERON:0010703
intersection_of: UBERON:0001435 ! carpal bone
intersection_of: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton
relationship: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton
[Term]
id: UBERON:0001481
name: distal carpal bone
comment: Taxon notes: Primitively, each of the distal bones appears to have articulated with a single metacarpal[WP]
synonym: "distal carpal" EXACT [AAO:0000847]
xref: AAO:0000847
xref: FMA:33303
xref: MA:0002558
xref: SCTID:306716003
property_value: UBPROP:0000001 "Series of elements that articulate with the metacarpals.[AAO]" xsd:string
is_a: UBERON:0001435 ! carpal bone
relationship: distally_connected_to UBERON:0002374 ! metacarpal bone
relationship: part_of UBERON:0009880 ! carpal skeleton
[Term]
id: UBERON:0001482
name: muscle of shoulder
def: "A muscle organ that is part of a shoulder [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "muscle organ of shoulder" EXACT [OBOL:automatic]
synonym: "shoulder muscle" EXACT []
synonym: "shoulder muscle organ" EXACT [OBOL:automatic]
xref: FMA:33531
xref: MA:0000633
is_a: UBERON:0010891 ! pectoral complex muscle
relationship: part_of UBERON:0001467
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001483
name: skin of shoulder
def: "A zone of skin that is part of a shoulder region." [UBERON:cjm, UBERONREF:0000003]
comment: Note in MA this is a subclass of forelimb skin, but this violates part-disjointness in Uberon
synonym: "shoulder skin" EXACT []
synonym: "shoulder zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of shoulder" EXACT [OBOL:automatic]
xref: EMAPA:18059
xref: FMA:34830
xref: MA:0000635
xref: SCTID:244131002
is_a: UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0001467
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001484
name: articular capsule
def: "An articular capsule (or joint capsule) is an envelope surrounding a synovial joint. [WP,unvetted]." [Wikipedia:Articular_capsule]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "capsula articularis" EXACT [FMA:34836, FMA:TA]
synonym: "capsulae articulares" RELATED LATIN [Wikipedia:Articular_capsule]
synonym: "fibrous capsule of joint" EXACT []
synonym: "joint capsule" EXACT []
synonym: "joint fibrous capsule" EXACT []
xref: FMA:34836
xref: GAID:263
xref: galen:JointCapsule
xref: http://upload.wikimedia.org/wikipedia/commons/1/19/Joint.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Gray299.png/200px-Gray299.png
xref: MA:0001519
xref: MESH:A.02.835.583.443
xref: ncithesaurus:Joint_Capsule
xref: SCTID:182238002
is_a: UBERON:0000094 ! membrane organ
relationship: part_of UBERON:0002217 ! synovial joint
[Term]
id: UBERON:0001485
name: knee joint
def: "The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation. Since in humans the knee supports nearly the whole weight of the body, it is the joint most vulnerable both to acute injury and the development of osteoarthritis. [WP,unvetted]." [Wikipedia:Knee]
subset: uberon_slim
synonym: "articulatio genus" RELATED LATIN [Wikipedia:Knee]
synonym: "joint of knee" EXACT [OBOL:automatic]
xref: EFO:0001957
xref: EMAPA:19137
xref: FMA:35175
xref: GAID:114
xref: galen:KneeJoint
xref: http://upload.wikimedia.org/wikipedia/commons/c/ca/Knee.agr.jpg
xref: MA:0000471
xref: MESH:A.02.835.583.475
xref: ncithesaurus:Knee_Joint
xref: OpenCyc:Mx4rwCuaYZwpEbGdrcN5Y29ycA
xref: SCTID:182204005
xref: VHOG:0001003
is_a: UBERON:0004174 ! leg joint
is_a: UBERON:0011139 ! synovial limb joint
relationship: connects UBERON:0000979
relationship: connects UBERON:0000981
relationship: connects UBERON:0002446
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0000979 ! tibia
intersection_of: connects UBERON:0000981 ! femur
intersection_of: connects UBERON:0002446 ! patella
relationship: connects UBERON:0000979 ! tibia
relationship: connects UBERON:0000981 ! femur
relationship: connects UBERON:0002446 ! patella
relationship: develops_from UBERON:0006256 {evidence="definitional"} ! knee joint primordium
relationship: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0001486
name: hip joint
def: "The hip joint is a synovial joint formed by the articulation of the rounded head of the femur and the cup-like acetabulum of the pelvis. It forms the primary connection between the bones of the lower limb and the axial skeleton of the trunk and pelvis. Both joint surfaces are covered with a strong but lubricated layer called articular hyaline cartilage. The cuplike acetabulum forms at the union of three pelvic bones — the ilium, pubis, and ischium." [Wikipedia:Hip#Articulation]
comment: Alternate def - "The articulation between the femur and the innominate bone." [BTO:0001502]
subset: uberon_slim
synonym: "articulatio coxofemoralis" EXACT [FMA:35178]
synonym: "coxal articulation" RELATED [Wikipedia:Hip]
synonym: "femoro-iliac joint" EXACT []
xref: BTO:0001502
xref: EMAPA:19136
xref: FMA:35178
xref: GAID:262
xref: galen:HipJoint
xref: MA:0000470
xref: MESH:A.02.835.583.411
xref: ncithesaurus:Hip_Joint
xref: OpenCyc:Mx4rwP32b5wpEbGdrcN5Y29ycA
xref: SCTID:182201002
xref: VHOG:0001001
is_a: UBERON:0011107 {source="FMA"} ! synovial joint of pelvic girdle
relationship: connects UBERON:0000981
relationship: connects UBERON:0001269
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0000981 ! femur
intersection_of: connects UBERON:0001269 ! acetabular part of hip bone
relationship: connects UBERON:0000981 ! femur
relationship: connects UBERON:0001269 ! acetabular part of hip bone
relationship: develops_from UBERON:0006244 {evidence="definitional"} ! hip joint primordium
relationship: part_of UBERON:0001464 {source="FMA"} ! hip
[Term]
id: UBERON:0001487
name: joint of foot
def: "A skeletal joint that is part of a foot [Obol]." [OBOL:automatic]
comment: TODO check FMA - use the set class for now
synonym: "articulationes pedis" EXACT [FMA:71349, FMA:TA]
synonym: "foot joint" EXACT []
synonym: "hind limb autopod joint" EXACT [OBOL:automatic]
synonym: "joint of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "joints of foot" EXACT PLURAL [FMA:71349]
xref: FMA:35194
xref: FMA:71349
xref: GAID:256
xref: MA:0000464
xref: MESH:A.02.835.583.378
xref: SCTID:244555001
is_a: UBERON:0003840 ! hindlimb joint
is_a: UBERON:0003841 ! autopod joint
is_a: UBERON:0011139 ! synovial limb joint
relationship: part_of UBERON:0002387
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001488
name: ankle joint
def: "A joint that connects the hindlimb autopod and zeugopod skeletons. In human anatomy, this is the joint that is formed by the inferior articular and malleolar articular surfaces of the TIBIA; the malleolar articular surface of the FIBULA; and the medial malleolar, lateral malleolar, and superior surfaces of the TALUS." [MESH:A.02.835.583.378.062, UBERON:cjm, Wikipedia:Ankle]
comment: Editor notes: current restricted to organisms that have a distinct tibia, fibula and talus
subset: uberon_slim
synonym: "gambrel" NARROW [Wikipedia:Hock_(anatomy)]
synonym: "hock joint" NARROW [Wikipedia:Hock_(anatomy)]
synonym: "talocrural articulation" RELATED [Wikipedia:Ankle]
synonym: "talocrural joint" RELATED [Wikipedia:Ankle]
xref: BTO:0004706
xref: EFO:0001409
xref: FMA:35195
xref: GAID:257
xref: galen:AnkleJoint
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png
xref: MA:0000463
xref: MESH:A.02.835.583.378.062
xref: ncithesaurus:Ankle_Joint
xref: OpenCyc:Mx4rvwiy35wpEbGdrcN5Y29ycA
xref: SCTID:182212002
is_a: UBERON:0001487 ! joint of foot
relationship: connects UBERON:0001445
relationship: connects UBERON:0010720
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001445 ! skeleton of foot
intersection_of: connects UBERON:0010720 ! hindlimb zeugopod skeleton
relationship: connects UBERON:0001445 ! skeleton of foot
relationship: connects UBERON:0010720 ! hindlimb zeugopod skeleton
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001489
name: joint of hand
def: "A skeletal joint that is part of a hand [Obol]." [OBOL:automatic]
comment: TODO check FMA - use the set class for now
synonym: "articulationes manus" EXACT [FMA:71345, FMA:TA]
synonym: "hand joint" EXACT []
synonym: "joint of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "joints of hand" EXACT [FMA:71345]
xref: FMA:71345
xref: MA:0000452
xref: SCTID:244546004
is_a: UBERON:0003839 ! forelimb joint
is_a: UBERON:0003841 ! autopod joint
is_a: UBERON:0011139 ! synovial limb joint
relationship: part_of UBERON:0002398
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001490
name: elbow joint
def: "A joint that connects the forelimb zeugopod and stylopod skeletons[Obol]. In human anatomy, the elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis[HP]." [UBERON:cjm, Wikipedia:Elbow]
subset: uberon_slim
synonym: "articulatio cubiti" EXACT LATIN []
synonym: "cubital region joint" EXACT [OBOL:automatic]
synonym: "joint of cubital region" EXACT [OBOL:automatic]
synonym: "joint of elbow" EXACT [OBOL:automatic]
xref: EMAPA:19102
xref: FMA:35289
xref: GAID:253
xref: galen:ElbowJoint
xref: MA:0000451
xref: MESH:A.02.835.583.290
xref: ncithesaurus:Elbow_Joint
xref: SCTID:182169008
xref: VHOG:0000997
is_a: UBERON:0003839 ! forelimb joint
is_a: UBERON:0011139 ! synovial limb joint
relationship: connects UBERON:0000976
relationship: connects UBERON:0010703
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0000976 ! humerus
intersection_of: connects UBERON:0010703 ! forelimb zeugopod skeleton
relationship: connects UBERON:0000976 ! humerus
relationship: connects UBERON:0010703 ! forelimb zeugopod skeleton
relationship: develops_from UBERON:0006224 {evidence="definitional"} ! elbow joint primordium
relationship: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0001491
name: wrist joint
def: "A joint connecting the forelimb zeugopod skeleton with the carpal skeleton." [https://sourceforge.net/tracker/?group_id=76834&atid=1205376, UBERON:cjm]
comment: AO notes: in FMA this includes radio-carpal and radio-ulnar ligaments
subset: uberon_slim
synonym: "carpal region joint" EXACT [OBOL:automatic]
synonym: "joint of carpal region" EXACT [OBOL:automatic]
synonym: "joint of wrist" EXACT []
synonym: "radio-carpal joint" EXACT [MA:0000461]
synonym: "radiocarpal joint" EXACT [FMA:35291]
xref: EMAPA:19205
xref: FMA:35291
xref: GAID:274
xref: galen:WristJoint
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Human_wrist.png/200px-Human_wrist.png
xref: MA:0000460
xref: MA:0000461
xref: MESH:A.02.835.583.959
xref: ncithesaurus:Wrist_Joint
xref: OpenCyc:Mx4rvZD2PJwpEbGdrcN5Y29ycA
xref: SCTID:182178002
is_a: UBERON:0001489 ! joint of hand
relationship: connects UBERON:0009880
relationship: connects UBERON:0010703
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0009880 ! carpal skeleton
intersection_of: connects UBERON:0010703 ! forelimb zeugopod skeleton
relationship: connects UBERON:0009880 ! carpal skeleton
relationship: connects UBERON:0010703 ! forelimb zeugopod skeleton
relationship: part_of UBERON:0004452 ! carpal region
[Term]
id: UBERON:0001492
name: radial nerve
def: "The radial nerve is a nerve in the human body that supplies the upper limb. It supplies the triceps brachii muscle of the arm, as well as all 12 muscles in the posterior osteofascial compartment of the forearm, as well as the associated joints and overlying skin. It originates from the posterior cord of the brachial plexus with roots from C5, C6, C7, C8 & T1. The radial nerve and its branches supply the dorsal muscles, such as triceps brachii, the extrinsic extensors of the wrist and hands, and the cutaneous nerve supply to most of the back of the hand. (The ulnar nerve cutaneously innervates the back of the little finger and adjacent half of the ring finger). The radial nerve divides into a deep branch (which becomes the posterior interosseous nerve), and continues as the superficial branch which goes on to innervate the dorsum (back) of the hand. [WP,unvetted]." [Wikipedia:Radial_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nervus radialis" RELATED LATIN [Wikipedia:Radial_nerve]
xref: EHDAA2:0001584
xref: EHDAA:5650
xref: EMAPA:17278
xref: FMA:37069
xref: GAID:845
xref: http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray818.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gray818.png/200px-Gray818.png
xref: MA:0001171
xref: MESH:A.08.800.800.720.050.700
xref: ncithesaurus:Radial_Nerve
xref: OpenCyc:Mx4rvfk7E5wpEbGdrcN5Y29ycA
xref: SCTID:181011002
xref: VHOG:0000896
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003433 ! arm nerve
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001814 ! brachial nerve plexus
[Term]
id: UBERON:0001493
name: axillary nerve
def: "The axillary nerve is a nerve of the human body, that comes off the posterior cord of the brachial plexus at the level of the axilla (armpit) and carries nerve fibers from C5 and C6. The axillary nerve travels through the quadrangular space with the posterior circumflex humeral artery and vein. [WP,unvetted]." [Wikipedia:Axillary_nerve]
subset: uberon_slim
synonym: "auxillery nerve" RELATED [Wikipedia:Axillary_nerve]
synonym: "circumflex humeral nerve" EXACT []
synonym: "circumflex nerve" RELATED [Wikipedia:Axillary_nerve]
synonym: "nervus axillaris" RELATED LATIN [Wikipedia:Axillary_nerve]
synonym: "nervus axillaris" RELATED [Wikipedia:Axillary_nerve]
xref: EMAPA:18802
xref: FMA:37072
xref: http://upload.wikimedia.org/wikipedia/commons/e/ea/Brachial_plexus_2.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Brachial_plexus.jpg/200px-Brachial_plexus.jpg
xref: MA:0001166
xref: ncithesaurus:Axillary_Nerve
xref: OpenCyc:Mx4rvgwMfpwpEbGdrcN5Y29ycA
xref: SCTID:181009006
is_a: UBERON:0002003 {source="MA"} ! peripheral nerve
is_a: UBERON:0003433 ! arm nerve
relationship: part_of UBERON:0001460 {source="MA"} ! arm
relationship: part_of UBERON:0001814 {source="MA"} ! brachial nerve plexus
[Term]
id: UBERON:0001494
name: ulnar nerve
alt_id: UBERON:0005668
def: "In human anatomy, the ulnar nerve is a nerve which runs near the ulna bone. The ulnar nerve is the largest unprotected nerve in the human body (meaning, unprotected by muscle or bone), and the only unprotected nerve that does not serve a purely sensory function (those nerves specifically meant to perceive changes in the environment, such as nerves in the skin). This nerve is directly connected to the little finger, and the adjacent half of the ring finger, supplying the palmar side of these fingers, including both front and back of the tips, perhaps as far back as the fingernail beds. One method of injuring the nerve is to strike the medial epicondyle of the humerus from posteriorly, or inferiorly with the elbow flexed. The ulnar nerve is trapped between the bone and the overlying skin at this point. This is commonly referred to as hitting one's 'funny bone. ' This name is thought to be a pun, based on the sound resemblance between the words 'humerus' and 'humourous' . [WP,unvetted]." [Wikipedia:Ulnar_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nervus ulnaris" RELATED LATIN [Wikipedia:Ulnar_nerve]
xref: EHDAA2:0002099
xref: EHDAA:5652
xref: EMAPA:17279
xref: FMA:37319
xref: GAID:846
xref: http://upload.wikimedia.org/wikipedia/commons/e/ea/Brachial_plexus_2.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Brachial_plexus.jpg/200px-Brachial_plexus.jpg
xref: MA:0001174
xref: MESH:A.08.800.800.720.050.850
xref: ncithesaurus:Ulnar_Nerve
xref: SCTID:181012009
xref: VHOG:0000922
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003433 ! arm nerve
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001814 ! brachial nerve plexus
[Term]
id: UBERON:0001495
name: pectoral muscle
comment: This currently groups the major and minor muscles (which have different attachment sites) as well as the AAO structure: Muscle which is comprised of three heads. The anterior head is the portio epicoracoidea that originates on the epicoracoid cartilage and inserts on the deltoid crest of the humerus. The next more posterior head, portio sternalis, originates on the sternum and inserts in the groove next to the deltoid crest of the humerus. The most posterior head, portio abdominalis, arises from the M. rectus abdominis and inserts on the deltoid crest of the humerus
subset: grouping_class
subset: uberon_slim
synonym: "breast muscle" RELATED [BTO:0000023]
synonym: "M. pectoralis" EXACT [AAO:0010727]
synonym: "muscle of pectoral part of chest" EXACT [FMA:37349]
synonym: "muscle of pectoral region" EXACT [FMA:37349]
synonym: "pectoralis" RELATED []
synonym: "pectoralis muscle" RELATED [BTO:0000023]
xref: AAO:0010727
xref: BTO:0000023
xref: FMA:37349
xref: GAID:153
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Pectoralis_major.png/200px-Pectoralis_major.png
xref: MA:0002423
xref: MESH:A.02.633.567.775
xref: ncithesaurus:Pectoralis_Muscle
xref: SCTID:181621006
property_value: UBPROP:0000001 "Muscle which is comprised of three heads. The anterior head is the portio epicoracoidea that originates on the epicoracoid cartilage and inserts on the deltoid crest of the humerus. The next more posterior head, portio sternalis, originates on the sternum and inserts in the groove next to the deltoid crest of the humerus. The most posterior head, portio abdominalis, arises from the M. rectus abdominis and inserts on the deltoid crest of the humerus.[AAO]" xsd:string
is_a: UBERON:0003830 ! thoracic segment muscle
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0008196 {source="FMA"} ! muscle of pectoral girdle
relationship: develops_from UBERON:0010984 ! pectoral pre-muscle mass
relationship: part_of UBERON:0004464 {source="BTO"} ! musculature of thorax
[Term]
id: UBERON:0001496
name: ascending aorta
def: "The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta[GO]. A portion of the aorta commencing at the upper part of the base of the left ventricle, on a level with the lower border of the third costal cartilage behind the left half of the sternum; it passes obliquely upward, forward, and to the right, in the direction of the heart’s axis, as high as the upper border of the second right costal cartilage, describing a slight curve in its course, and being situated, about 6 cm behind the posterior surface of the sternum. The total length is about 5 cm in length [Wikipedia]" [GO:0035905, Wikipedia:Ascending_aorta]
subset: uberon_slim
synonym: "pars ascendens aortae" EXACT []
synonym: "pars ascendens aortae, aorta ascendens" RELATED LATIN [Wikipedia:Ascending_aorta]
xref: EHDAA2:0000147
xref: EHDAA:9828
xref: EMAPA:17014
xref: EMAPA:18604
xref: EMAPA:25959
xref: FMA:3736
xref: http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0002570
xref: ncithesaurus:Ascending_Aorta
xref: OpenCyc:Mx4rwVFqO5wpEbGdrcN5Y29ycA
xref: SCTID:181299009
is_a: UBERON:0001515 ! thoracic aorta
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0005338 {source="EHDAA2"} ! outflow tract aortic component
relationship: has_developmental_contribution_from UBERON:0002061 ! truncus arteriosus
relationship: has_developmental_contribution_from UBERON:0005432 ! aortic sac
relationship: part_of UBERON:0001515 ! thoracic aorta
[Term]
id: UBERON:0001497
name: muscle of pelvic girdle
def: "A muscle organ that is part of a pelvic girdle [Obol]." [OBOL:automatic]
comment: AO notes: Note that in MA, this is a subclass of pelvis muscle; in FMA this is a hindlimb muscle, but recall in FMA hindlimb includes the girdle.
synonym: "girdle-pelvic muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of girdle-pelvic" EXACT [OBOL:automatic]
synonym: "muscle organ of pelvic girdle" EXACT [OBOL:automatic]
synonym: "muscle organ of pelvic girdle bone" EXACT [OBOL:automatic]
synonym: "pelvic girdle bone muscle organ" EXACT [OBOL:automatic]
synonym: "pelvic girdle muscle" EXACT []
synonym: "pelvic girdle muscle organ" EXACT [OBOL:automatic]
xref: FMA:37367
xref: MA:0000537
is_a: UBERON:0010890 ! pelvic complex muscle
relationship: part_of UBERON:0001271
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001271 ! pelvic girdle region
relationship: part_of UBERON:0001271 ! pelvic girdle region
relationship: part_of UBERON:0004470 ! musculature of pelvic girdle
[Term]
id: UBERON:0001498
name: muscle of foot
def: "A muscle organ that is part of a foot [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "autopod of hind limb muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of inferior member muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity muscle organ" EXACT [OBOL:automatic]
synonym: "foot muscle" EXACT []
synonym: "foot muscle organ" EXACT [OBOL:automatic]
synonym: "hind limb autopod muscle organ" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "hindlimb autopod muscle organ" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "inferior member autopod muscle organ" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "lower extremity autopod muscle organ" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "muscle organ of foot" EXACT [OBOL:automatic]
synonym: "muscle organ of hind limb autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of inferior member autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb muscle organ" EXACT [OBOL:automatic]
xref: BTO:0000477
xref: FMA:37369
xref: MA:0000652
xref: SCTID:67240005
is_a: UBERON:0003663 ! hindlimb muscle
relationship: part_of UBERON:0002387
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001499
name: muscle of arm
def: "A muscle organ that is part of an arm [Obol]." [OBOL:automatic]
comment: See notes on UBERON:0001460 for possible terminological confusion over term 'arm'
synonym: "arm muscle" EXACT [MA:0000594]
synonym: "arm muscle system" RELATED [EHDAA2:0000141]
synonym: "muscle of upper arm or lower arm" EXACT [UBERON:cjm]
synonym: "upper arm / lower arm muscle" EXACT [UBERON:cjm]
xref: EHDAA2:0000141
xref: MA:0000594
is_a: UBERON:0003662 ! forelimb muscle
relationship: part_of UBERON:0001460
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001500
name: muscle of hand
def: "A muscle organ that is part of a hand [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "arm autopod muscle organ" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of arm muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of brachial region muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
synonym: "brachial region autopod muscle organ" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
synonym: "hand muscle" EXACT []
synonym: "hand muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of arm autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of arm" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "muscle organ of brachial region autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "muscle organ of hand" EXACT [OBOL:automatic]
synonym: "muscle organ of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod muscle organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
xref: FMA:37372
xref: MA:0000628
xref: SCTID:110540008
is_a: UBERON:0003662 ! forelimb muscle
relationship: part_of UBERON:0002398
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001501
name: lumbrical of hand
comment: This class was created automatically from a combination of ontologies
synonym: "hand lumbrical" EXACT []
synonym: "hand lumbrical muscle" EXACT []
xref: FMA:37385
xref: MA:0002316
xref: SCTID:181654008
is_a: UBERON:0001500 ! muscle of hand
[Term]
id: UBERON:0001502
name: interosseous muscle of hand
comment: This class was created automatically from a combination of ontologies
synonym: "hand interosseous muscle" EXACT []
xref: FMA:37417
xref: MA:0002313
xref: ncithesaurus:Hand_Interosseous_Muscle
xref: SCTID:265804003
is_a: UBERON:0001500 ! muscle of hand
is_a: UBERON:0006508 ! interosseus muscle
relationship: part_of UBERON:0002398
intersection_of: UBERON:0006508 ! interosseus muscle
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001503
name: dorsal interosseous of hand
def: "The dorsal interossei of the hand are muscles that occupy the space between the metacarpals. There are four dorsal interossei in each hand. They are specified as 'dorsal' to contrast them with the palmar interossei, which are located on the anterior side of the metacarpals. The dorsal interosseous muscles are bipennate, with each muscle arising by two heads from the adjacent sides of the metacarpal bones, but more extensively from the metacarpal bone of the finger into which the muscle is inserted. They are inserted into the bases of the proximal phalanges and into the extensor expansion of the corresponding extensor digitorum tendon. The middle digit has two dorsal interossei insert onto it while the first digit (thumb) and the fifth digit (little finger) have none[WP]." [Wikipedia:Dorsal_interossei_muscles_(hand)]
synonym: "dorsal hand interosseus muscle" EXACT []
synonym: "musculi interossei dorsales manus" EXACT []
xref: FMA:37418
xref: MA:0002314
xref: ncithesaurus:Dorsal_Hand_Interosseous_Muscle
xref: SCTID:245002007
is_a: UBERON:0001502 ! interosseous muscle of hand
relationship: has_muscle_insertion UBERON:0004302 {source="dbpedia"} ! proximal phalanx
relationship: has_muscle_origin UBERON:0010544 {source="dbpedia"} ! metacarpus skeleton
[Term]
id: UBERON:0001504
name: lumbrical of foot
def: "The lumbricals are four small skeletal muscles, accessory to the tendons of the flexor digitorum longus and numbered from the medial side of the foot; they arise from these tendons, as far back as their angles of division, each springing from two tendons, except the first." [Wikipedia:Lumbricals_of_the_foot]
synonym: "foot lumbrical" EXACT []
synonym: "foot lumbrical muscle" EXACT []
xref: FMA:37453
xref: MA:0002305
xref: SCTID:181715003
is_a: UBERON:0001498 ! muscle of foot
[Term]
id: UBERON:0001505
name: coracobrachialis muscle
def: "The Coracobrachialis is the smallest of the three muscles that attach to the coracoid process of the scapula. (The other two muscles are pectoralis minor and biceps brachii. ) It is situated at the upper and medial part of the arm. It is perforated by and innervated by the musculocutaneous nerve. [WP,unvetted]." [Wikipedia:Coracobrachialis_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "coracobrachial" EXACT [MA:0002282]
synonym: "coracobrachialis" EXACT []
synonym: "coracobrachialis muscle" RELATED [Wikipedia:Coracobrachialis_muscle]
synonym: "musculus coracobrachialis" RELATED LATIN [Wikipedia:Coracobrachialis_muscle]
synonym: "Pirogoff's aponeurosis" EXACT [FMA:37664]
xref: FMA:37664
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Coracobrachialis.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Coracobrachialis.png/200px-Coracobrachialis.png
xref: MA:0002282
xref: ncithesaurus:Coracobrachialis
xref: SCTID:244980008
is_a: UBERON:0004255 {source="FMA"} ! forelimb stylopod muscle
relationship: has_muscle_insertion UBERON:0000976 {source="dbpedia", notes="medial humerus"} ! humerus
relationship: has_muscle_nerve UBERON:0003724 {source="dbpedia"} ! musculocutaneous nerve
relationship: has_muscle_origin UBERON:0006633 {source="dbpedia", notes="coracoid process of scapula"} ! coracoid process of scapula
[Term]
id: UBERON:0001506
name: brachialis muscle
def: "The brachialis (brachialis anticus) is a muscle in the upper arm that flexes the elbow joint. It lies just deep of the biceps brachii, and is a synergist that assists the biceps brachii in flexing at the elbow. It makes up part of the floor of the region known as the cubital fossa. [WP,unvetted]." [Wikipedia:Brachialis_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "brachialis" RELATED [Wikipedia:Brachialis_muscle]
synonym: "brachialis anticus muscle" RELATED [Wikipedia:Brachialis_muscle]
synonym: "Casserio's muscle" EXACT []
synonym: "musculus brachialis" RELATED LATIN [Wikipedia:Brachialis_muscle]
xref: EHDAA2:0000181
xref: EHDAA:8281
xref: EMAPA:19068
xref: EMAPA:19109
xref: FMA:37667
xref: http://upload.wikimedia.org/wikipedia/commons/8/87/Brachialis.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Brachialis.png/200px-Brachialis.png
xref: MA:0002271
xref: ncithesaurus:Brachialis
xref: SCTID:244982000
xref: VHOG:0001026
is_a: UBERON:0001499 ! muscle of arm
relationship: has_muscle_insertion UBERON:0010994 {source="dbpedia", notes="coronoid process and the tuberosity of the ulna"} ! coronoid process of ulna
relationship: has_muscle_nerve UBERON:0003724 {source="dbpedia"} ! musculocutaneous nerve
relationship: has_muscle_origin UBERON:0000976 {notes="anterior surface of the humerus particularly the distal half of this bone", source="dbpedia"} ! humerus
[Term]
id: UBERON:0001507
name: biceps brachii
def: "A muscle in the forelimb stylopod which in humans has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]." [Wikipedia:Biceps_brachii_muscle]
subset: uberon_slim
synonym: "biceps" BROAD [EHDAA2:0000167]
synonym: "biceps brachii %26 brachialis muscles" RELATED [Wikipedia:Biceps_brachii_muscle]
synonym: "biceps brachii muscle" RELATED [Wikipedia:Biceps_brachii_muscle]
synonym: "biceps cubiti" RELATED [Wikipedia:Biceps_brachii_muscle]
synonym: "biceps muscle" RELATED [Wikipedia:Biceps_brachii_muscle]
synonym: "musculus biceps brachii" RELATED LATIN [Wikipedia:Biceps_brachii_muscle]
xref: BTO:0003419
xref: EHDAA2:0000167
xref: EHDAA:8279
xref: EMAPA:19067
xref: EMAPA:19108
xref: FMA:37670
xref: http://upload.wikimedia.org/wikipedia/commons/c/c2/Biceps_brachii.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Biceps_%28PSF%29.jpg/200px-Biceps_%28PSF%29.jpg
xref: MA:0002269
xref: ncithesaurus:Biceps
xref: SCTID:265802004
xref: VHOG:0000861
is_a: UBERON:0004255 ! forelimb stylopod muscle
relationship: has_muscle_antagonist UBERON:0001509 {source="dbpedia"} ! triceps brachii
relationship: has_muscle_insertion UBERON:0001423 {notes="radial tuberosity and bicipittal aponeurosis into deep fascia on medial part of forearm", source="dbpedia"} ! radius bone
relationship: has_muscle_nerve UBERON:0003724 {source="dbpedia", notes="Musculocutaneous nerve"} ! musculocutaneous nerve
relationship: has_muscle_origin UBERON:0006633 {source="dbpedia", notes="short head: coracoid process of the scapula. long head: supraglenoid tubercle"} ! coracoid process of scapula
relationship: has_muscle_origin UBERON:0010760 {source="dbpedia", notes="short head: coracoid process of the scapula. long head: supraglenoid tubercle"} ! supraglenoid tubercle
relationship: part_of UBERON:0003822 {source="OG"} ! forelimb stylopod
[Term]
id: UBERON:0001508
name: arch of aorta
def: "begins at the level of the upper border of the second sternocostal articulation of the right side, and runs at first upward, backward, and to the left in front of the trachea; it is then directed backward on the left side of the trachea and finally passes downward on the left side of the body of the fourth thoracic vertebra, at the lower border of which it becomes continuous with the descending aorta[WP]." [Wikipedia:Arch_of_aorta]
comment: Do not confuse with aortic arch; check EHDAA2
subset: uberon_slim
synonym: "aortic arch" RELATED [FMA:3768]
synonym: "arcus aortae" EXACT [FMA:3768, FMA:TA]
synonym: "thoracic aorta" RELATED [GAID:471]
xref: BTO:0000157
xref: EFO:0002526
xref: EHDAA2:0000132
xref: EMAPA:17613
xref: EMAPA:18602
xref: FMA:3768
xref: GAID:471
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0000475
xref: SCTID:181300001
xref: VHOG:0001196
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001515 ! thoracic aorta
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0003121 ! aortic arch 4
relationship: has_developmental_contribution_from UBERON:0005432 ! aortic sac
relationship: has_developmental_contribution_from UBERON:0005613 ! left dorsal aorta
relationship: part_of UBERON:0001515 ! thoracic aorta
[Term]
id: UBERON:0001509
name: triceps brachii
def: "The triceps brachii muscle (Latin for 'three-headed' muscle of the arm, it is called a three headed muscle because there are three bundles of muscle, each of different origin, joining together at the elbow) is the large muscle on the back of the human upper limb. It is the muscle principally responsible for extension of the elbow joint (i.e. straightening of the arm). Though a similarly-named muscle, the triceps surae, is found on the lower leg, the triceps brachii is commonly called simply the 'triceps'. [WP,unvetted]." [Wikipedia:Triceps_brachii_muscle]
subset: uberon_slim
synonym: "musculus triceps brachii" RELATED LATIN [Wikipedia:Triceps_brachii_muscle]
synonym: "triceps" EXACT [EHDAA2:0002080]
synonym: "triceps brachii muscle" EXACT [Wikipedia:Triceps_brachii_muscle]
synonym: "triceps muscle" RELATED [Wikipedia:Triceps_brachii_muscle]
xref: EHDAA2:0002080
xref: EHDAA:8287
xref: EMAPA:19070
xref: FMA:37688
xref: http://upload.wikimedia.org/wikipedia/commons/8/83/Triceps_brachii.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/83/Triceps_brachii.png/200px-Triceps_brachii.png
xref: MA:0002399
xref: ncithesaurus:Triceps
xref: ncithesaurus:Triceps_Brachii
xref: SCTID:181623009
xref: VHOG:0000851
is_a: UBERON:0004255 ! forelimb stylopod muscle
relationship: has_muscle_antagonist UBERON:0001507 {source="dbpedia"} ! biceps brachii
relationship: has_muscle_insertion UBERON:0006810 {source="dbpedia", notes="olecranon process of ulna"} ! olecranon
relationship: has_muscle_nerve UBERON:0001492 {notes="radial nerve and axillary nerve", source="dbpedia"} ! radial nerve
relationship: has_muscle_nerve UBERON:0001493 {notes="radial nerve and axillary nerve", source="dbpedia"} ! axillary nerve
relationship: has_muscle_origin UBERON:0000976 {source="dbpedia", notes="lateral head: posterior humerus"} ! humerus
relationship: has_muscle_origin UBERON:0006849 {notes="long head: infraglenoid tubercle of scapula", source="dbpedia"} ! scapula
relationship: part_of UBERON:0003822 {source="OG"} ! forelimb stylopod
[Term]
id: UBERON:0001510
name: skin of knee
def: "A zone of skin that is part of a knee [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "knee skin" EXACT []
synonym: "knee zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of knee" EXACT [OBOL:automatic]
xref: EMAPA:18151
xref: FMA:37800
xref: MA:0000668
xref: ncithesaurus:Knee_Skin
xref: SCTID:181552001
is_a: UBERON:0001511 ! skin of leg
relationship: part_of UBERON:0001465
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001465 ! knee
relationship: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0001511
name: skin of leg
def: "A zone of skin that is part of a leg [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "leg skin" EXACT []
synonym: "leg zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of leg" EXACT [OBOL:automatic]
xref: EMAPA:18156
xref: EMAPA:18159
xref: FMA:37828
xref: MA:0000674
xref: ncithesaurus:Leg_Skin
is_a: UBERON:0003532 ! hindlimb skin
relationship: part_of UBERON:0000978
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001512
name: skin of ankle
def: "A zone of skin that is part of an ankle [Obol]." [OBOL:automatic]
synonym: "ankle skin" EXACT []
synonym: "ankle zone of skin" EXACT [OBOL:automatic]
synonym: "tarsal region skin" EXACT [UBERON:cjm]
synonym: "zone of skin of ankle" EXACT [OBOL:automatic]
xref: FMA:37831
xref: MA:0000641
xref: ncithesaurus:Ankle_Skin
xref: SCTID:181560000
is_a: UBERON:0001513 ! skin of foot
relationship: part_of UBERON:0004454
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0004454 ! tarsal region
relationship: part_of UBERON:0004454 ! tarsal region
[Term]
id: UBERON:0001513
name: skin of foot
def: "A zone of skin that is part of a foot [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "autopod of hind limb zone of skin" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb zone of skin" EXACT [OBOL:automatic]
synonym: "autopod of inferior member zone of skin" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity zone of skin" EXACT [OBOL:automatic]
synonym: "foot skin" EXACT []
synonym: "foot zone of skin" EXACT [OBOL:automatic]
synonym: "hind limb autopod zone of skin" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "hindlimb autopod zone of skin" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "inferior member autopod zone of skin" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "lower extremity autopod zone of skin" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "skin of hind-paw" NARROW SENSU [EMAPA:18504]
synonym: "terminal segment of free lower limb zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "zone of skin of foot" EXACT [OBOL:automatic]
synonym: "zone of skin of hind limb autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of inferior member autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of terminal segment of free lower limb" EXACT [OBOL:automatic]
xref: EMAPA:18504
xref: FMA:37834
xref: MA:0000654
xref: ncithesaurus:Foot_Skin
xref: SCTID:181529000
is_a: UBERON:0003532 ! hindlimb skin
relationship: part_of UBERON:0002387
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001514
name: descending aorta
def: " The descending aorta is the portion of the aorta in a two-pass circulatory system from the arch of aorta to the point where it divides into the common iliac arteries[GO]. The descending aorta is part of the aorta, the largest artery in the body. The descending aorta is the part of the aorta beginning at the aortic arch that runs down through the chest and abdomen. The descending aorta is divided into two portions, the thoracic and abdominal, in correspondence with the two great cavities of the trunk in which it is situated. Within the abdomen, the descending aorta branches into the two common iliac arteries which serve the legs. [WP,unvetted]." [GO:0035906, Wikipedia:Descending_aorta]
comment: Development notes: results from fusion of left and right dorsal aortae
subset: uberon_slim
synonym: "aorta descendens" RELATED [Wikipedia:Descending_aorta]
synonym: "pars descendens aortae" EXACT [FMA:3784]
synonym: "pars descendens aortae, aorta descendens" RELATED LATIN [Wikipedia:Descending_aorta]
xref: EMAPA:18605
xref: FMA:3784
xref: http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0002571
xref: ncithesaurus:Descending_Aorta
xref: OpenCyc:Mx4rv4EE35wpEbGdrcN5Y29ycA
xref: SCTID:261399002
is_a: UBERON:0005800 {source="FMA"} ! segment of aorta
relationship: develops_from UBERON:0005805 {source="Wikipedia"} ! dorsal aorta
relationship: has_developmental_contribution_from UBERON:0005613 ! left dorsal aorta
relationship: has_developmental_contribution_from UBERON:0005622 ! right dorsal aorta
relationship: part_of UBERON:0000947 {source="FMA"} ! aorta
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001515
name: thoracic aorta
def: "The thoracic aorta is contained in the posterior mediastinal cavity. It begins at the lower border of the fourth thoracic vertebra where it is continuous with the aortic arch, and ends in front of the lower border of the twelfth thoracic vertebra, at the aortic hiatus in the diaphragm where it becomes the abdominal aorta. At its commencement, it is situated on the left of the vertebral column; it approaches the median line as it descends; and, at its termination, lies directly in front of the column. The vessel describes a curve which is concave forward; as the branches given off from it are small, its diminution in size is insignificant. It has a radius of approximately 1.16 cm. [WP,unvetted]." [Wikipedia:Thoracic_aorta]
subset: uberon_slim
synonym: "pars thoracica aortae, aorta thoracalis" RELATED LATIN [Wikipedia:Thoracic_aorta]
synonym: "thoracic part of aorta" EXACT []
xref: BTO:0000157
xref: EFO:0002525
xref: EMAPA:18603
xref: FMA:3786
xref: GAID:471
xref: galen:ThoracicAorta
xref: http://upload.wikimedia.org/wikipedia/commons/7/75/Gray530.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Gray530.png/200px-Gray530.png
xref: MA:0002569
xref: MESH:A.07.231.114.056.372
xref: ncithesaurus:Thoracic_Aorta
xref: OpenCyc:Mx4rveb9TpwpEbGdrcN5Y29ycA
xref: SCTID:302510009
is_a: UBERON:0005800 {source="FMA"} ! segment of aorta
relationship: part_of UBERON:0000915
intersection_of: UBERON:0005800 ! segment of aorta
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0001516
name: abdominal aorta
def: "Abdominal part of aorta: the distal part of the descending aorta, which is the continuation of the thoracic part and gives rise to the inferior phrenic, lumbar, median sacral, superior and inferior mesenteric, middle suprarenal, renal, and testicular or ovarian arteries, and celiac trunk[BTO]. The abdominal aorta is the largest artery in the abdominal cavity. As part of the aorta, it is a direct continuation of descending aorta(of the thorax). [WP,unvetted]." [BTO:0002976, Wikipedia:Abdominal_aorta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "abdominal part of aorta" EXACT [FMA:3789]
synonym: "abdominal part of aorta" RELATED [BTO:0002976]
synonym: "aorta abdominalis" RELATED [BTO:0002976]
synonym: "descending abdominal aorta" EXACT [FMA:3789]
synonym: "pars abdominalis aortae" EXACT [FMA:3789]
synonym: "pars abdominalis aortae" RELATED [BTO:0002976]
synonym: "pars abdominalis aortae, aorta abdominalis" RELATED LATIN [Wikipedia:Abdominal_aorta]
xref: BTO:0002976
xref: EFO:0002524
xref: EMAPA:17856
xref: EMAPA:18607
xref: FMA:3789
xref: GAID:470
xref: galen:AbdominalAorta
xref: http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png
xref: MA:0000474
xref: MESH:A.07.231.114.056.205
xref: ncithesaurus:Abdominal_Aorta
xref: OpenCyc:Mx4rvYhWCZwpEbGdrcN5Y29ycA
xref: SCTID:244231007
is_a: UBERON:0005800 ! segment of aorta
relationship: part_of UBERON:0000916
intersection_of: UBERON:0005800 ! segment of aorta
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0001514 {source="FMA"} ! descending aorta
[Term]
id: UBERON:0001517
name: skin of elbow
alt_id: UBERON:0003399
def: "A zone of skin that is part of a elbow [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "cubital region zone of skin" EXACT [OBOL:automatic]
synonym: "elbow skin" EXACT []
synonym: "elbow zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of cubital region" EXACT [OBOL:automatic]
synonym: "zone of skin of elbow" EXACT [OBOL:automatic]
xref: EMAPA:18051
xref: FMA:38250
xref: MA:0000610
xref: ncithesaurus:Elbow_Skin
xref: SCTID:181534001
is_a: UBERON:0002427 ! arm skin
relationship: part_of UBERON:0001461
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001461 ! elbow
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0001518
name: skin of wrist
def: "A zone of skin that is part of a wrist [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "carpal region zone of skin" EXACT [OBOL:automatic]
synonym: "wrist skin" EXACT []
synonym: "wrist zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of carpal region" EXACT [OBOL:automatic]
synonym: "zone of skin of wrist" EXACT [OBOL:automatic]
xref: FMA:38280
xref: MA:0000638
xref: ncithesaurus:Wrist_Skin
xref: SCTID:181540008
is_a: UBERON:0001519 ! skin of hand
relationship: part_of UBERON:0004452
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0004452 ! carpal region
relationship: part_of UBERON:0004452 ! carpal region
[Term]
id: UBERON:0001519
name: skin of hand
def: "A zone of skin that is part of a hand [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "arm autopod zone of skin" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "autopod of arm zone of skin" EXACT [OBOL:automatic]
synonym: "autopod of brachial region zone of skin" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb zone of skin" EXACT [OBOL:automatic]
synonym: "brachial region autopod zone of skin" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb zone of skin" EXACT [OBOL:automatic]
synonym: "hand skin" EXACT []
synonym: "hand zone of skin" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod zone of skin" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "skin of fore-paw" NARROW SENSU [EMAPA:18486]
synonym: "terminal segment of free upper limb zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of arm autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of arm" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "zone of skin of brachial region autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "zone of skin of hand" EXACT [OBOL:automatic]
synonym: "zone of skin of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of terminal segment of free upper limb" EXACT [OBOL:automatic]
xref: EMAPA:18486
xref: FMA:38295
xref: MA:0000630
xref: ncithesaurus:Hand_Skin
xref: SCTID:181527003
is_a: UBERON:0003531 ! forelimb skin
relationship: part_of UBERON:0002398
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001520
name: pronator teres
def: "The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]." [Wikipedia:Pronator_teres_muscle]
subset: uberon_slim
synonym: "musculus pronator teres" RELATED LATIN [Wikipedia:Pronator_teres_muscle]
synonym: "pronator teres muscle" RELATED [Wikipedia:Pronator_teres_muscle]
xref: FMA:38450
xref: http://upload.wikimedia.org/wikipedia/commons/8/87/Pronator-teres.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Pronator-teres.png/200px-Pronator-teres.png
xref: MA:0002357
xref: ncithesaurus:Pronator_Teres
xref: SCTID:302514000
is_a: UBERON:0003662 ! forelimb muscle
relationship: has_muscle_antagonist UBERON:0003228 {source="dbpedia"} ! supinator muscle
relationship: has_muscle_insertion UBERON:0001028 {notes="Middle of the lateral surface of the body of the radius", source="dbpedia"} ! diaphysis of radius
relationship: has_muscle_nerve UBERON:0001148 {source="dbpedia"} ! median nerve
relationship: has_muscle_origin UBERON:0006806 {notes="humeral head: medial epicondyle of humerus ulnar head: coronoid process of ulna", source="dbpedia"} ! entepicondyle of humerus
relationship: has_muscle_origin UBERON:0010994 {notes="humeral head: medial epicondyle of humerus ulnar head: coronoid process of ulna", source="dbpedia"} ! coronoid process of ulna
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0001521
name: flexor carpi radialis muscle
def: "A muscle of the forearm that acts to flex and abduct the hand. [WP,unvetted]." [Wikipedia:Flexor_carpi_radialis_muscle]
comment: AO notes - we group the AAO class here, despite the different insertion site - requires vetting "Muscle which originates on the inner border of the humerus and inserts on the carpus." [AAO:0010733]
subset: uberon_slim
synonym: "flexor carpi radialis" EXACT [MA:0002297]
xref: AAO:0010733
xref: FMA:38459
xref: http://upload.wikimedia.org/wikipedia/commons/5/59/Flexor-carpi-radialis.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Flexor-carpi-radialis.png/200px-Flexor-carpi-radialis.png
xref: MA:0002297
xref: ncithesaurus:Flexor_Carpi_Radialis
xref: SCTID:361816002
property_value: UBPROP:0000001 "Muscle which originates on the inner border of the humerus and inserts on the carpus.[AAO]" xsd:string
is_a: UBERON:0000366 ! flexor muscle
is_a: UBERON:0004254 ! forelimb zeugopod muscle
relationship: has_muscle_insertion UBERON:0002374 {notes="2 and 3 in human"} ! metacarpal bone
relationship: has_muscle_origin UBERON:0006806 ! entepicondyle of humerus
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0001522
name: flexor carpi ulnaris muscle
def: "The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the hand. [WP,unvetted]." [Wikipedia:Flexor_carpi_ulnaris_muscle]
comment: AO notes: AAO has a class with the same name, the exact insertion point is unclear; consider grouping "Muscle which originates from the medial condyle of the humerus and inserts on the carpus." [AAO:0010734]
subset: uberon_slim
synonym: "flexor carpi ulnaris" EXACT [Wikipedia:Flexor_carpi_ulnaris_muscle]
synonym: "musculus flexor carpi ulnaris" RELATED LATIN [Wikipedia:Flexor_carpi_ulnaris_muscle]
xref: FMA:38465
xref: http://upload.wikimedia.org/wikipedia/commons/c/c1/FCU.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/FCU.png/200px-FCU.png
xref: MA:0002298
xref: ncithesaurus:Flexor_Carpi_Ulnaris
xref: SCTID:244985003
is_a: UBERON:0000366 ! flexor muscle
is_a: UBERON:0004254 ! forelimb zeugopod muscle
relationship: has_muscle_insertion UBERON:0001429 {source="dbpedia"} ! pisiform
relationship: has_muscle_origin UBERON:0006806 {source="dbpedia", notes="medial epicondyle"} ! entepicondyle of humerus
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0001523
name: flexor digitorum profundus
def: "In human anatomy, the flexor digitorum profundus is a muscle in the forearm that flexes the fingers. It is considered to be an extrinsic muscle because its action is at a different location than the main body of the muscle. Flexor digitorum profundus, along with flexor digitorum superficialis have long tendons that run down the arm and through the carpal tunnel and attach to the palmar side of the phalanges of the fingers. This muscle originates from the upper 3/4ths anterior and medial side of the ulna. Flexor digitorum profundus lies deep to superficialis, but it attaches more distally. To get around this problem profundus's tendons go through the tendons of superficialis, and end up attaching to the distal phalanx. [WP,unvetted]." [Wikipedia:Flexor_digitorum_profundus_muscle]
comment: Note that in EMAPA, this is part of the leg, which is presumably a mistake
subset: uberon_slim
synonym: "flexor digitorum profundus muscle" EXACT [Wikipedia:Flexor_digitorum_profundus_muscle]
synonym: "musculus flexor digitorum profundus" RELATED LATIN [Wikipedia:Flexor_digitorum_profundus_muscle]
xref: BTO:0001246
xref: EMAPA:19319
xref: FMA:38478
xref: http://upload.wikimedia.org/wikipedia/commons/2/24/Flexor-digitorum-profundis.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/24/Flexor-digitorum-profundis.png/200px-Flexor-digitorum-profundis.png
xref: MA:0002300
xref: ncithesaurus:Flexor_Digitorum_Profundus
is_a: UBERON:0000366 {source="BTO"} ! flexor muscle
is_a: UBERON:0004255 ! forelimb stylopod muscle
relationship: has_muscle_antagonist UBERON:0007612 {source="dbpedia"} ! extensor digitorum communis
relationship: has_muscle_insertion UBERON:0004300 {source="dbpedia", notes="base of the distal phalanges of the fingers"} ! distal phalanx
relationship: has_muscle_origin UBERON:0001010 {source="dbpedia", notes="upper 3/4 of the volar and medial surfaces of the body of the ulna interosseous membrane and deep fascia of the forearm"} ! diaphysis of ulna
relationship: part_of UBERON:0003822 {source="FMA"} ! forelimb stylopod
[Term]
id: UBERON:0001524
name: extensor carpi radialis longus muscle
def: "Extensor carpi radialis longus is one of the five main muscles that control movements at the wrist. This muscle is quite long, starting on the lateral side of the humerus, and attaching to the base of the second metacarpal bone (metacarpal of the index finger). [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_longus_muscle]
subset: uberon_slim
synonym: "extensor carpi radialis longus" EXACT [MA:0002291]
synonym: "musculus extensor carpi radialis longus" RELATED LATIN [Wikipedia:Extensor_carpi_radialis_longus_muscle]
xref: FMA:38494
xref: http://upload.wikimedia.org/wikipedia/commons/7/75/ECR-longus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/ECR-longus.png/200px-ECR-longus.png
xref: MA:0002291
xref: ncithesaurus:Extensor_Carpi_Radialis_Longus
xref: SCTID:244990000
is_a: UBERON:0011024 {source="Wikipedia"} ! extrinsic extensor muscle of hand
relationship: has_muscle_insertion UBERON:0003646 {source="dbpedia", notes="base"} ! metacarpal bone of digit 2
relationship: has_muscle_nerve UBERON:0001492 {source="dbpedia"} ! radial nerve
relationship: has_muscle_origin UBERON:0004404 {source="dbpedia", notes="lateral supracondylar ridge"} ! distal epiphysis of humerus
[Term]
id: UBERON:0001525
name: extensor carpi radialis brevis muscle
def: "The Extensor carpi radialis brevis is shorter and thicker than the extensor carpi radialis longus. The longus muscle can be found above the distal end of the Extensor carpi radialis brevis. [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_brevis_muscle]
subset: uberon_slim
synonym: "extensor carpi radialis brevis" EXACT [MA:0002290]
synonym: "musculus extensor carpi radialis brevis" EXACT LATIN [Wikipedia:Extensor_carpi_radialis_brevis_muscle]
xref: FMA:38497
xref: MA:0002290
xref: ncithesaurus:Extensor_Carpi_Radialis_Brevis
xref: SCTID:244991001
is_a: UBERON:0011024 {source="Wikipedia"} ! extrinsic extensor muscle of hand
relationship: has_muscle_insertion UBERON:0003647 {source="dbpedia", notes="base"} ! metacarpal bone of digit 3
relationship: has_muscle_nerve UBERON:0001492 {source="dbpedia", notes="deep part"} ! radial nerve
relationship: has_muscle_origin UBERON:0006807 {source="dbpedia"} ! ectepicondyle of humerus
[Term]
id: UBERON:0001526
name: extensor carpi ulnaris muscle
def: "Extensor carpi ulnaris is a muscle located in the forearm that acts to extend and adduct the wrist. Being an extensor muscle, extensor carpi ulnaris is on the posterior side of the forearm. [WP]." [Wikipedia:Extensor_carpi_ulnaris_muscle]
comment: Taxon notes: Amphibians - def: "Muscle of the forearm: It shares a common origin with two other muscles of the forearm. It arises from the lateral epicondyle of the humerus by two tendons: the first one is in common with the m. extensor digitorum communis longus, and the second one is broad and in common with the m. epicondylocubitalis. It is pinnately attached to the dorsal surface of the distal carpal 5-4-3." [AAO:0010281]. Note that we make the insertion relationship a GCI until digit numbering issues are resolved
subset: uberon_slim
synonym: "ECU muscle" EXACT []
synonym: "extensor carpi ulnaris" EXACT []
synonym: "musculus extensor carpi ulnaris" EXACT []
xref: AAO:0010281
xref: FMA:38506
xref: http://upload.wikimedia.org/wikipedia/commons/2/25/Extensor_carpi_ulnaris_muscle.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray418.png/200px-Gray418.png
xref: MA:0002292
xref: ncithesaurus:Extensor_Carpi_Ulnaris
xref: SCTID:244992008
property_value: UBPROP:0000001 "Muscle of the forearm: It shares a common origin with two other muscles of the forearm. It arises from the lateral epicondyle of the humerus by two tendons: the first one is in common with the m. extensor digitorum communis longus, and the second one is broad and in common with the m. epicondylocubitalis. It is pinnately attached to the dorsal surface of the distal carpal 5-4-3.[AAO]" xsd:string
is_a: UBERON:0011024 {source="Wikipedia"} ! extrinsic extensor muscle of hand
relationship: has_muscle_insertion UBERON:0003649 {gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! metacarpal bone of digit 5
relationship: has_muscle_origin UBERON:0006807 ! ectepicondyle of humerus
[Term]
id: UBERON:0001527
name: abductor pollicis longus
def: "The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]." [Wikipedia:Abductor_pollicis_longus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "abductor pollicis longus muscle" RELATED [Wikipedia:Abductor_pollicis_longus_muscle]
synonym: "musculus abductor pollicis longus" RELATED LATIN [Wikipedia:Abductor_pollicis_longus_muscle]
xref: FMA:38515
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Gray1231.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray1231.png/200px-Gray1231.png
xref: MA:0002266
xref: ncithesaurus:Abductor_Pollicis_Longus
xref: SCTID:256671001
is_a: UBERON:0011534 ! abductor pollicis muscle
relationship: has_muscle_antagonist UBERON:0002962 {source="dbpedia"} ! adductor pollicis muscle
relationship: has_muscle_insertion UBERON:0003645 ! metacarpal bone of digit 1
relationship: has_muscle_origin UBERON:0001424 {source="dbpedia"} ! ulna
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0001528
name: radio-ulnar joint
def: "A joint that connects the radius and the ulna. Examples: proximal and distal radio-ulnar joints" [UBERON:cjm]
subset: uberon_slim
synonym: "radioulnar articulation" RELATED []
synonym: "radioulnar joint" EXACT []
synonym: "radioulnar joint" EXACT [FMA:38863]
xref: EMAPA:19206
xref: FMA:38863
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Forearm_labeled.png/200px-Forearm_labeled.png
xref: MA:0000462
xref: OpenCyc:Mx4rvlO2nJwpEbGdrcN5Y29ycA
xref: SCTID:264167003
is_a: UBERON:0003839 ! forelimb joint
relationship: connects UBERON:0001423
relationship: connects UBERON:0001424
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001423 ! radius bone
intersection_of: connects UBERON:0001424 ! ulna
relationship: connects UBERON:0001423 ! radius bone
relationship: connects UBERON:0001424 ! ulna
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0001529
name: brachiocephalic artery
def: "The brachiocephalic artery (or brachiocephalic trunk or innominate artery) is an artery of the mediastinum that supplies blood to the right arm and the head and neck. It is the first branch of the aortic arch, and soon after it emerges, the brachiocephalic artery divides into the right common carotid artery and the right subclavian artery. There is no brachiocephalic artery for the left side of the body. The left common carotid, and the left subclavian artery, come directly off the aortic arch. However, there are two brachiocephalic veins. [WP,unvetted]." [Wikipedia:Brachiocephalic_artery]
subset: uberon_slim
synonym: "brachiocephalic trunk" EXACT [MA:0001922]
synonym: "innominate artery" EXACT []
synonym: "truncus brachiocephalicus" EXACT [FMA:3932, FMA:TA]
synonym: "truncus brachiocephalicus" RELATED LATIN [Wikipedia:Brachiocephalic_artery]
xref: EFO:0002550
xref: EHDAA2:0000835
xref: EMAPA:17615
xref: FMA:3932
xref: GAID:476
xref: galen:BrachioCephalicArtery
xref: http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0001922
xref: MESH:A.07.231.114.145
xref: ncithesaurus:Innominate_Artery
xref: OpenCyc:Mx4rv9mMTpwpEbGdrcN5Y29ycA
xref: SCTID:244244002
is_a: UBERON:0004573 ! systemic artery
relationship: channels_from UBERON:0001508 ! arch of aorta
relationship: part_of UBERON:0007204 ! brachiocephalic vasculature
[Term]
id: UBERON:0001530
name: common carotid artery plus branches
def: "A bilaterally paired branched artery that originates from the aortic arches and divides into and includes as parts the internal and external carotid arteries[cjm]." [Wikipedia:Common_carotid_artery]
comment: Editor notes: we follow the FMA and treat the artery as a tree-structure - here we include the internal and external as parts. For the part that excludes the branches, see 'trunk of common carotid artery'. Development notes: in birds and reptiles, develops from arch III and parts of ventral and dorsal aortae
subset: uberon_slim
synonym: "a. carotis communis" RELATED LATIN [Wikipedia:Common_carotid_artery]
synonym: "carotid artery" BROAD [FMA:3939]
synonym: "carotid artery system" EXACT [EHDAA2:0000217]
synonym: "common carotid artery" EXACT INCONSISTENT [FMA:3939]
synonym: "trunk of common carotid tree" EXACT [FMA:3939]
xref: EHDAA2:0000217
xref: EHDAA:7331
xref: EMAPA:17855
xref: FMA:3939
xref: GAID:479
xref: http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0001926
xref: MESH:A.07.231.114.186.200
xref: ncithesaurus:Common_Carotid_Artery
xref: SCTID:362041005
xref: VHOG:0000272
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004573 {source="FMA"} ! systemic artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0004363 {source="Wikipedia"} ! aortic arch
[Term]
id: UBERON:0001531
name: right common carotid artery plus branches
def: "In human anatomy, the common carotid artery is an artery that supplies the head and neck with oxygenated blood; it divides in the neck to form the external and internal carotid arteries. [WP,unvetted]." [Wikipedia:Right_common_carotid_artery]
comment: Editor notes: placement of the MA class here is not strictly correct, as the MA class does not include the branches
subset: uberon_slim
synonym: "trunk of right common carotid tree" EXACT [FMA:3941]
xref: FMA:3941
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0001928
xref: ncithesaurus:Right_Common_Carotid_Artery
xref: OpenCyc:Mx4rtW9-AqgEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA
xref: SCTID:362042003
is_a: UBERON:0001530 ! common carotid artery plus branches
is_a: UBERON:0001530 {source="FMA"} ! common carotid artery plus branches
relationship: branch_of UBERON:0001529 {source="FMA", gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! brachiocephalic artery
[Term]
id: UBERON:0001532
name: internal carotid artery
def: "In human anatomy, the internal carotid artery is a major artery of the head and neck that helps supply blood to the brain. [WP,unvetted]." [Wikipedia:Internal_carotid_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "arteria carotis interna" RELATED LATIN [Wikipedia:Internal_carotid_artery]
synonym: "ICA" RELATED []
xref: AAO:0011054
xref: BTO:0004697
xref: EFO:0001952
xref: EHDAA2:0000873
xref: EHDAA:408
xref: EHDAA:6389
xref: EMAPA:16328
xref: EMAPA:18612
xref: FMA:3947
xref: GAID:481
xref: http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray513.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray513.png/200px-Gray513.png
xref: MA:0001930
xref: MESH:A.07.231.114.186.200.230
xref: ncithesaurus:Internal_Carotid_Artery
xref: OpenCyc:Mx4rvYx8KZwpEbGdrcN5Y29ycA
xref: SCTID:362045001
xref: TAO:0005081
xref: VHOG:0000267
xref: XAO:0000366
xref: ZFA:0005081
property_value: UBPROP:0000001 "One of the major arteries of the head, it is the as the cranial continuation of the aortic arches and the dorsal aorta. It curves ventrally before resuming a dorsal course as it enters the head proper, and it lies ventral to the internal jugular vein. The internal carotid artery gives off palatine, ophthalmic, and cerebral branches by stage NF stage 41.[AAO]" xsd:string
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005396 {source="MA"} ! carotid artery segment
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: branch_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches
relationship: develops_from UBERON:0004363 {source="Wikipedia"} ! aortic arch
relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches
[Term]
id: UBERON:0001533
name: subclavian artery
def: "In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib[WP]. The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch. Kimmel et al. 1993" [Wikipedia:Subclavian_artery, ZFIN:curator]
comment: Editors notes: this should be reviewed for pan-vertebrate applicability. Developmental relationships should be added (intersegmental artery and right dorsal aorta in EHDAA2, occipitovertebral artery in XAO)
subset: uberon_slim
subset: unverified_taxonomic_grouping
subset: vertebrate_core
synonym: "arteria subclavia" EXACT [XAO:0000365]
synonym: "arteria subclavia" RELATED LATIN [Wikipedia:Subclavian_artery]
synonym: "arterial tree of upper limb" EXACT []
synonym: "PA" RELATED []
synonym: "pectoral artery" EXACT []
synonym: "subclavian arterial tree" EXACT []
xref: AAO:0010232
xref: EHDAA2:0001933
xref: EHDAA:4357
xref: EMAPA:17617
xref: FMA:3951
xref: GAID:511
xref: http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0002045
xref: MESH:A.07.231.114.839
xref: ncithesaurus:Subclavian_Artery
xref: OpenCyc:Mx4rvp8u1JwpEbGdrcN5Y29ycA
xref: SCTID:265790007
xref: TAO:0005086
xref: XAO:0000365
xref: ZFA:0005086
property_value: UBPROP:0000001 "Artery which supplies blood via branches to the various muscles of the shoulder region and to the forelimb.[AAO]" xsd:string
property_value: UBPROP:0000001 "The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch. Kimmel et al. 1993[TAO]" xsd:string
is_a: UBERON:0004573 ! systemic artery
relationship: overlaps UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0001534
name: right subclavian artery
def: "In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib. [WP,unvetted]." [Wikipedia:Subclavian_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0004514
xref: FMA:3953
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0002047
xref: ncithesaurus:Right_Subclavian_Artery
xref: OpenCyc:Mx4rtW7hwqgEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA
xref: SCTID:244246000
is_a: UBERON:0001533 {source="FMA"} ! subclavian artery
relationship: branch_of UBERON:0001529 {source="FMA"} ! brachiocephalic artery
[Term]
id: UBERON:0001535
name: vertebral artery
def: "The vertebral arteries are branches of the subclavian arteries. The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted]." [Wikipedia:Vertebral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "arteria vertebralis" RELATED LATIN [Wikipedia:Vertebral_artery]
xref: EHDAA2:0002192
xref: EHDAA:5328
xref: EMAPA:17314
xref: FMA:3956
xref: GAID:518
xref: http://upload.wikimedia.org/wikipedia/commons/f/ff/Vertebral_artery.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/ff/Vertebral_artery.png/200px-Vertebral_artery.png
xref: MA:0002077
xref: MESH:A.07.231.114.955
xref: ncithesaurus:Vertebral_Artery
xref: OpenCyc:Mx4rvg_ir5wpEbGdrcN5Y29ycA
xref: SCTID:181323003
xref: TAO:0005033
xref: VHOG:0000263
xref: ZFA:0005033
is_a: UBERON:0004573 ! systemic artery
relationship: branch_of UBERON:0001533 ! subclavian artery
relationship: supplies UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0001536
name: left common carotid artery plus branches
def: "In human anatomy, the common carotid artery is an artery that supplies the head and neck with oxygenated blood; it divides in the neck to form the external and internal carotid arteries. [WP,unvetted]." [Wikipedia:Left_common_carotid_artery]
comment: Editor notes: placement of the MA class here is not strictly correct, as the MA class does not include the branches
subset: uberon_slim
synonym: "trunk of left common carotid tree" EXACT [FMA:4058]
xref: FMA:4058
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0001927
xref: ncithesaurus:Left_Common_Carotid_Artery
xref: OpenCyc:Mx4rdz4xcLVIEduAAAAOpmP6tw
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA
xref: SCTID:362043008
is_a: UBERON:0001530 {source="FMA"} ! common carotid artery plus branches
[Term]
id: UBERON:0001537
name: anterior tibial artery
def: "The anterior tibial artery of the lower limb carries blood to the anterior compartment of the leg and dorsal surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the anterior tibial vein, along its course. It crosses the anterior aspect of the ankle joint, at which point it becomes the dorsalis pedis artery. [WP,unvetted]." [Wikipedia:Anterior_tibial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria tibialis anterior" RELATED LATIN [Wikipedia:Anterior_tibial_artery]
xref: FMA:43894
xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Gray1247.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray1247.png/200px-Gray1247.png
xref: MA:0002574
xref: ncithesaurus:Anterior_Tibial_Artery
xref: OpenCyc:Mx4rvaHcEZwpEbGdrcN5Y29ycA
xref: SCTID:181357006
is_a: UBERON:0007610 ! tibial artery
[Term]
id: UBERON:0001538
name: posterior tibial artery
def: "The posterior tibial artery of the lower limb carries blood to the posterior compartment of the leg and plantar surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the posterior tibial vein, along its course. [WP,unvetted]." [Wikipedia:Posterior_tibial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria tibialis posterior" RELATED LATIN [Wikipedia:Posterior_tibial_artery]
xref: FMA:43895
xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Gray1247.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray1247.png/200px-Gray1247.png
xref: MA:0002575
xref: ncithesaurus:Posterior_Tibial_Artery
xref: OpenCyc:Mx4rwLSaQ5wpEbGdrcN5Y29ycA
xref: SCTID:181358001
is_a: UBERON:0007610 ! tibial artery
[Term]
id: UBERON:0001539
name: dorsalis pedis artery
def: "In human anatomy, the dorsalis pedis artery (dorsal artery of foot), is a blood vessel of the lower limb that carries oxygenated blood to the dorsal surface of the foot. It arises at the anterior aspect of the ankle joint and is a continuation of the anterior tibial artery. It terminates at the proximal part of the first intermetatarsal space, where it divides into two branches, the first dorsal metatarsal artery and the deep plantar artery. Along its course, it is accompanied by a deep vein, the dorsalis pedis vein. [WP,unvetted]." [Wikipedia:Dorsalis_pedis_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria dorsalis pedis" EXACT [FMA:43915, FMA:TA]
synonym: "arteria dorsalis pedis" RELATED LATIN [Wikipedia:Dorsalis_pedis_artery]
synonym: "dorsal artery of foot" EXACT []
xref: FMA:43915
xref: galen:DorsalisPedisArtery
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray553.png
xref: MA:0001942
xref: ncithesaurus:Dorsalis_Pedis_Artery
xref: SCTID:181362007
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001540
name: peroneal artery
def: "In anatomy, the fibular artery (also known as the peroneal artery) supplies blood to the lateral compartment of the leg and is typically a branch of posterior tibial artery. [WP,unvetted]." [Wikipedia:Peroneal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria fibularis" EXACT [FMA:43921, FMA:TA]
synonym: "fibular artery" EXACT []
xref: FMA:43921
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Fibular_artery.png/200px-Fibular_artery.png
xref: MA:0002018
xref: ncithesaurus:Peroneal_Artery
xref: OpenCyc:Mx4rwSO_s5wpEbGdrcN5Y29ycA
xref: SCTID:181359009
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003516 ! hindlimb blood vessel
relationship: part_of UBERON:0001538 ! posterior tibial artery
[Term]
id: UBERON:0001541
name: medial plantar artery
def: "The medial plantar artery (internal plantar artery), much smaller than the lateral, passes forward along the medial side of the foot. It is at first situated above the Abductor hallucis, and then between it and the Flexor digitorum brevis, both of which it supplies. At the base of the first metatarsal bone, where it is much diminished in size, it passes along the medial border of the first toe, anastomosing with the first dorsal metatarsal artery. Small superficial digital branches accompany the digital branches of the medial plantar nerve and join the plantar metatarsal arteries of the first three spaces. [WP,unvetted]." [Wikipedia:Medial_plantar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "a. plantaris medialis" RELATED LATIN [Wikipedia:Medial_plantar_artery]
xref: FMA:43925
xref: http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray555.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray555.png/200px-Gray555.png
xref: MA:0001997
xref: ncithesaurus:Medial_Plantar_Artery
xref: SCTID:181360004
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003516 ! hindlimb blood vessel
relationship: part_of UBERON:0001538 ! posterior tibial artery
[Term]
id: UBERON:0001542
name: inguinal lymph node
def: "A lymph node in the inguinal region." [Wikipedia:Inguinal_lymph_node]
comment: TODO - superficial/deep
subset: uberon_slim
xref: FMA:44226
xref: MA:0000737
xref: ncithesaurus:Inguinal_Lymph_Node
xref: SCTID:181762005
is_a: UBERON:0003968 ! peripheral lymph node
[Term]
id: UBERON:0001543
name: popliteal lymph node
def: "The popliteal lymph nodes, small in size and some six or seven in number, are imbedded in the fat contained in the popliteal fossa. One lies immediately beneath the popliteal fascia, near the terminal part of the small saphenous vein, and drains the region from which this vein derives its tributaries. Another is placed between the popliteal artery and the posterior surface of the knee-joint; it receives the lymphatic vessels from the knee-joint together with those which accompany the genicular arteries. The others lie at the sides of the popliteal vessels, and receive as efferents the trunks which accompany the anterior and posterior tibial vessels. The efferents of the popliteal glands pass almost entirely alongside the femoral vessels to the deep inguinal glands, but a few may accompany the great saphenous vein, and end in the glands of the superficial subinguinal group. [WP,unvetted]." [Wikipedia:Popliteal_lymph_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:44227
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray609.png/200px-Gray609.png
xref: MA:0000738
xref: ncithesaurus:Popliteal_Lymph_Node
xref: SCTID:279156002
is_a: UBERON:0003968 ! peripheral lymph node
[Term]
id: UBERON:0001544
name: popliteal vein
def: "The popliteal vein course runs alongside the popliteal artery but carries the blood from the knee joint and muscles in the thigh and calf back to the heart. Its origin is defined by the junction of the posterior tibial vein and anterior tibial vein. It drains the peroneal vein before reaching the knee joint and turns into the femoral vein when leaving the adductor canal (also known as Hunter's canal). The popliteal artery extends from the femoral artery behind the popliteal fossa which is the space behind the knee. [WP,unvetted]." [Wikipedia:Popliteal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vena poplitea" RELATED LATIN [Wikipedia:Popliteal_vein]
xref: FMA:44327
xref: GAID:537
xref: galen:PoplitealVein
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Gray609.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray609.png/200px-Gray609.png
xref: MA:0002197
xref: MESH:A.07.231.908.641
xref: ncithesaurus:Popliteal_Vein
xref: OpenCyc:Mx4rv8Ch-JwpEbGdrcN5Y29ycA
xref: SCTID:281065001
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003232 ! epithelium of knee
is_a: UBERON:0003503 ! leg blood vessel
relationship: part_of UBERON:0001465 ! knee
relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein
[Term]
id: UBERON:0001545
name: anterior tibial vein
def: "In human anatomy, the anterior tibial vein of the lower limb carries blood from the anterior compartment of the leg to the popliteal vein which is forms when it joins with the posterior tibial vein. Like most deep veins, the anterior tibial vein is accompanied by an artery of the same name, the anterior tibial artery, along its course. [WP,unvetted]." [Wikipedia:Anterior_tibial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "venae tibiales anteriores" RELATED LATIN [Wikipedia:Anterior_tibial_vein]
xref: FMA:44331
xref: galen:AnteriorTibialVein
xref: http://upload.wikimedia.org/wikipedia/commons/4/4e/Gray440_color.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4e/Gray440_color.png/200px-Gray440_color.png
xref: MA:0002244
xref: ncithesaurus:Anterior_Tibial_Vein
xref: OpenCyc:Mx4rvXYDl5wpEbGdrcN5Y29ycA
xref: SCTID:281066000
is_a: UBERON:0010370 {source="MA"} ! tibial vein
relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein
relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein
[Term]
id: UBERON:0001546
name: posterior tibial vein
def: "In anatomy, the posterior tibial vein of the lower limb carries blood from the posterior compartment and plantar surface of the foot to the popliteal vein which it forms when it joins with the anterior tibial vein. Like most deep veins, the posterior tibial vein is accompanied by an artery of the same name, the posterior tibial artery, along its course. [WP,unvetted]." [Wikipedia:Posterior_tibial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "venae tibiales posteriores" RELATED LATIN [Wikipedia:Posterior_tibial_vein]
xref: FMA:44332
xref: galen:PosteriorTibialVein
xref: http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray583.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray583.png/200px-Gray583.png
xref: MA:0002245
xref: ncithesaurus:Posterior_Tibial_Vein
xref: OpenCyc:Mx4rwA9GD5wpEbGdrcN5Y29ycA
xref: SCTID:281067009
is_a: UBERON:0010370 {source="MA"} ! tibial vein
relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein
relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein
[Term]
id: UBERON:0001547
name: small saphenous vein
def: "The small saphenous vein (also lesser saphenous vein), is a relatively large vein of the superficial posterior leg. [WP,unvetted]." [Wikipedia:Small_saphenous_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lesser saphenous vein" EXACT []
synonym: "short saphenous vein" EXACT []
synonym: "vena saphena parva" EXACT [FMA:44333, FMA:TA]
synonym: "vena saphena parva" RELATED LATIN [Wikipedia:Small_saphenous_vein]
xref: BTO:0003272
xref: FMA:44333
xref: galen:LesserSaphenousVein
xref: http://upload.wikimedia.org/wikipedia/commons/6/62/Gray582.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/62/Gray582.png/200px-Gray582.png
xref: MA:0002217
xref: ncithesaurus:Short_Saphenous_Vein
xref: SCTID:181404009
is_a: UBERON:0007318 ! saphenous vein
relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein
relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein
[Term]
id: UBERON:0001548
name: lateral marginal vein
comment: This class was created automatically from a combination of ontologies
synonym: "lateral marginal vein of foot" EXACT []
synonym: "vena marginalis lateralis" EXACT []
synonym: "vena marginalis lateralis pedis" EXACT [FMA:44359, FMA:TA]
xref: FMA:44359
xref: MA:0002160
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein
relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein
relationship: tributary_of UBERON:0001547 {source="FMA/obol"} ! small saphenous vein
[Term]
id: UBERON:0001549
name: dorsal metatarsal vein
def: "The dorsal metatarsal veins are veins which drain the metatarsus of the foot. [WP,unvetted]." [Wikipedia:Dorsal_metatarsal_veins]
comment: This class was created automatically from a combination of ontologies
synonym: "metatarsal vein" EXACT []
synonym: "venae metatarsales dorsales" RELATED LATIN [Wikipedia:Dorsal_metatarsal_veins]
xref: FMA:44377
xref: MA:0002105
xref: ncithesaurus:Dorsal_Metatarsal_Vein
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein
relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein
relationship: tributary_of UBERON:0001547 {source="FMA/obol"} ! small saphenous vein
[Term]
id: UBERON:0001550
name: medial marginal vein
comment: This class was created automatically from a combination of ontologies
synonym: "medial marginal vein of foot" EXACT []
synonym: "vena marginalis medialis" EXACT []
synonym: "vena marginalis medialis pedis" EXACT [FMA:44420, FMA:TA]
xref: FMA:44420
xref: MA:0002171
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein
relationship: tributary_of UBERON:0001363 {source="FMA/obol"} ! great saphenous vein
[Term]
id: UBERON:0001551
name: sural vein
comment: This class was created automatically from a combination of ontologies
xref: FMA:44561
xref: MA:0002231
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein
relationship: tributary_of UBERON:0001544 {source="FMA/obol"} ! popliteal vein
[Term]
id: UBERON:0001552
name: arcuate artery
def: "One of the curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries." [MP:0011315, Wikipedia:Arcuate_artery_of_the_foot]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "kidney arcuate artery" EXACT [MP:0011315]
xref: EMAPA:28215
xref: FMA:44594
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray553.png
xref: MA:0002583
xref: SCTID:244331005
is_a: UBERON:0005268 ! renal cortex artery
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0001553
name: medial tarsal artery
comment: This class was created automatically from a combination of ontologies
xref: FMA:44598
xref: MA:0001998
xref: ncithesaurus:Medial_Tarsal_Artery
xref: SCTID:67925000
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001554
name: skin of hip
def: "A zone of skin that is part of a hip region." [UBERON:cjm, UBERONREF:0000003]
comment: AO notes: in MA this isa hindlimb skin
synonym: "hip region zone of skin" EXACT [OBOL:automatic]
synonym: "hip skin" EXACT []
synonym: "hip zone of skin" EXACT [OBOL:automatic]
synonym: "regio coxae zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of hip" EXACT [OBOL:automatic]
synonym: "zone of skin of hip region" EXACT [OBOL:automatic]
synonym: "zone of skin of regio coxae" EXACT [OBOL:automatic]
xref: EMAPA:18148
xref: FMA:45282
xref: MA:0000658
xref: SCTID:181518004
is_a: UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0001464
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0001555
name: digestive tract
def: "Tube extending from the mouth to the anus." [http://en.wikipedia.org/wiki/Talk:Human_gastrointestinal_tract, http://sourceforge.net/tracker/?func=detail&atid=440764&aid=2991587&group_id=36855]
comment: Terminology notes: we following Kardong in naming the entire tube from mouth to anus the alimentary canal. Kardong calls the portion of this tract that excludes buccal cavity and pharynx the 'alimentary canal', consider adding an extra class for this. AO notes: GO says gut is region of DT, from intestines to anus. ZFA treats as synonym for alimentary canal, and treats it as the sum of DT + organs (ZF has no term from stomach). GO says intestines to anus (excludes stomach and esophagus). MA appears to agree with GO (stomach and esophagus are not parts). FMA includes stomach and esophagus as parts of gut -- the FMA divides gut into lower and upper GI tract; it's not clear if this is exhaustive (small intestine is in neither), but lower GI tract may correspond better to the GO definition. NOTE: GO now changed, see sf id in def xref. Note that FMA also has a term 'gastrointestinal tract', but this includes the liver.
subset: uberon_slim
subset: vertebrate_core
synonym: "alimentary canal" NARROW []
synonym: "digestive tube" RELATED []
synonym: "enteric tract" EXACT [ZFA:0000112]
synonym: "gut" BROAD []
synonym: "gut tube" RELATED []
xref: AAO:0010023
xref: BILA:0000083
xref: BTO:0000511
xref: BTO:0000545
xref: EHDAA2:0000726
xref: EHDAA:518
xref: EMAPA:16247
xref: FBbt:00003125
xref: FMA:45615
xref: galen:AlimentaryTract
xref: ncithesaurus:Gastrointestinal_Tract
xref: OpenCyc:Mx4rvVi0GpwpEbGdrcN5Y29ycA
xref: TAO:0000112
xref: TGMA:0001819
xref: VHOG:0000309
xref: WBbt:0005743
xref: ZFA:0000112
property_value: RO:0002161 NCBITaxon:41324
property_value: UBPROP:0000001 "The alimentary or digestive tract, and associated organs.[TAO]" xsd:string
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0007026 ! primitive gut
relationship: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0001556
name: lower urinary tract
def: "Subdivision of urinary system which consists of the urinary bladder and the urethra." [FMA:45659]
subset: uberon_slim
xref: FMA:45659
xref: galen:LowerUrinaryTract
xref: MA:0002636
xref: SCTID:181420004
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001008 ! excretory system
[Term]
id: UBERON:0001557
name: upper respiratory tract
def: "Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0002136
xref: EMAPA:17669
xref: FMA:45661
xref: http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg
xref: MA:0000442
xref: OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ
xref: SCTID:361381009
xref: VHOG:0000406
is_a: UBERON:0000072 ! segment of respiratory tract
[Term]
id: UBERON:0001558
name: lower respiratory tract
def: "Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung.[FMA]" [FMA:FMA, Wikipedia:Lower_respiratory_tract]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0001036
xref: EMAPA:16738
xref: FMA:45662
xref: http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg
xref: MA:0000435
xref: OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g
xref: SCTID:281488008
xref: VHOG:0000382
is_a: UBERON:0000072 ! segment of respiratory tract
[Term]
id: UBERON:0001559
name: head of organ
comment: incorrect grouping
synonym: "head organ" EXACT [MA:0000581]
synonym: "organ head" EXACT []
is_obsolete: true
[Term]
id: UBERON:0001560
name: neck of organ
synonym: "organ neck" EXACT []
xref: FMA:45733
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0001561
name: subcostal artery
def: "The subcostal arteries, so named because they lie below the last ribs, constitute the lowest pair of branches derived from the thoracic aorta, and are in series with the intercostal arteries. Each passes along the lower border of the twelfth rib behind the kidney and in front of the Quadratus lumborum muscle, and is accompanied by the twelfth thoracic nerve. It then pierces the posterior aponeurosis of the Transversus abdominis, and, passing forward between this muscle and the Obliquus internus, anastomoses with the superior epigastric, lower intercostal, and lumbar arteries. Each subcostal artery gives off a posterior branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]." [Wikipedia:Subcostal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EMAPA:19097
xref: FMA:4613
xref: MA:0002048
xref: ncithesaurus:Subcostal_Artery
xref: SCTID:244243008
is_a: UBERON:0004573 ! systemic artery
[Term]
id: UBERON:0001562
name: digastric muscle
def: "The digastric muscle (also digastricus) (named digastric as it has two bellies) is a small muscle located under the jaw. It lies below the body of the mandible, and extends, in a curved form, from the mastoid process to the symphysis menti. It belongs to the suprahyoid muscles group. A broad aponeurotic layer is given off from the tendon of the digastricus on either side, to be attached to the body and greater cornu of the hyoid bone; this is termed the suprahyoid aponeurosis. [WP,unvetted]." [Wikipedia:Digastric_muscle]
subset: uberon_slim
synonym: "digastric" EXACT [MA:0002288]
synonym: "digastric muscle" RELATED [Wikipedia:Digastric_muscle]
synonym: "digastricus" RELATED [Wikipedia:Digastric_muscle]
synonym: "musculus digastricus" EXACT LATIN [Wikipedia:Digastric_muscle]
synonym: "musculus digastricus" RELATED [Wikipedia:Digastric_muscle]
xref: EMAPA:25134
xref: FMA:46291
xref: http://upload.wikimedia.org/wikipedia/commons/2/26/Digastricus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Digastricus.png/200px-Digastricus.png
xref: MA:0002288
xref: ncithesaurus:Digastric_Muscle
xref: SCTID:244825002
is_a: UBERON:0001577 ! facial muscle
is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle
relationship: has_muscle_insertion UBERON:0001685 {source="dbpedia", notes="Intermediate tendon"} ! hyoid bone
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia", notes="anterior belly - mandibular division of the trigeminal via the mylohyoid nerve; posterior belly - facial nerve"} ! facial nerve
[Term]
id: UBERON:0001563
name: longus capitis muscle
def: "The longus capitis (rectus capitis anticus major), broad and thick above, narrow below, arises by four tendinous slips, from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrae, and ascends, converging toward its fellow of the opposite side, to be inserted into the inferior surface of the basilar part of the occipital bone. It is innervated by a branch of cervical plexus. [WP,unvetted]." [Wikipedia:Longus_capitis_muscle]
subset: uberon_slim
synonym: "longus capitis" EXACT [MA:0002340]
synonym: "longus capitus muscle" RELATED [Wikipedia:Longus_capitis_muscle]
synonym: "m. rectus capitis posterior" EXACT [AAO:0010666]
synonym: "musculus longus capitis" RELATED LATIN [Wikipedia:Longus_capitis_muscle]
synonym: "rectus capitis anticus major" RELATED [Wikipedia:Longus_capitis_muscle]
xref: AAO:0010666
xref: EMAPA:25131
xref: FMA:46308
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/Longus_capitis.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Longus_capitis.png/200px-Longus_capitis.png
xref: MA:0002340
xref: ncithesaurus:Longus_Capitis
xref: SCTID:244837000
is_a: UBERON:0008549 {source="FMA-abduced"} ! prevertebral muscle
relationship: has_muscle_insertion UBERON:0001692 {notes="basilar part of the occipital bone", source="dbpedia"} ! basioccipital bone
relationship: has_muscle_nerve UBERON:0000962 ! cervical nerve
relationship: has_muscle_origin UBERON:0001077 {source="dbpedia", notes="anterior tubercles of the transverse processes of the third fourth fifth and sixth cervical vertebræ"} ! transverse process of vertebra
[Term]
id: UBERON:0001564
name: mylohyoid muscle
def: "The mylohyoid muscle is a muscle running from the mandible to the hyoid bone, forming the floor of the oral cavity. These muscles are mesodermal in origin." [Wikipedia:Mylohyoid_muscle]
comment: mylohyoideus and digastricus anterior of rats derived from intermandibularis posterior, see e.g. Jarvik [53] http://www.biomedcentral.com/1471-213X/8/24/table/T3
subset: uberon_slim
synonym: "musculus mylohyoideus" EXACT [Wikipedia:Mylohyoid_muscle]
synonym: "musculus mylohyoideus" RELATED LATIN [Wikipedia:Mylohyoid_muscle]
synonym: "mylohyoid" EXACT [Wikipedia:Mylohyoid_muscle]
synonym: "mylohyoideus" EXACT [Wikipedia:Mylohyoid_muscle]
synonym: "mylohyoideus muscle" EXACT [Wikipedia:Mylohyoid_muscle]
xref: FMA:46320
xref: http://upload.wikimedia.org/wikipedia/commons/9/92/Mylohyoid_muscle.PNG
xref: MA:0002344
xref: ncithesaurus:Mylohyoid
xref: SCTID:244827005
property_value: UBPROP:0000001 "The mylohyoid is a pharyngeal arch I muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to mylohyoid and attaches to the midline raphe linking R and L mylohyoid and the mandible.[FEED]" xsd:string
is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle
relationship: develops_from UBERON:0000926 {source="Wikipedia"} ! mesoderm
relationship: has_muscle_insertion UBERON:0003999 {source="dbpedia", notes="body of hyoid bone and median raphe"} ! hyoid bone body
relationship: has_muscle_nerve UBERON:0000375 {source="dbpedia", notes="mylohyoid nerve from inferior alveolar branch of mandibular nerve V3"} ! mandibular nerve
[Term]
id: UBERON:0001565
name: geniohyoid
def: "A jaw depressor muscle which in humans is a narrow muscle situated superior to the medial border of the mylohyoid muscle. [WP,unvetted]." [Wikipedia:Geniohyoid_muscle]
subset: uberon_slim
synonym: "genio-hyoideus" EXACT []
synonym: "genio-hyoideus muscle" EXACT []
synonym: "geniohyoid muscle" RELATED [Wikipedia:Geniohyoid_muscle]
synonym: "geniohyoideus" RELATED [Wikipedia:Geniohyoid_muscle]
synonym: "geniohyoideus muscle" EXACT [Wikipedia:Geniohyoid_muscle]
synonym: "musculus geniohyoideus" RELATED LATIN [Wikipedia:Geniohyoid_muscle]
xref: FMA:46325
xref: http://upload.wikimedia.org/wikipedia/commons/2/2c/Geniohyoid_muscle.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2c/Geniohyoid_muscle.PNG/200px-Geniohyoid_muscle.PNG
xref: MA:0002308
xref: ncithesaurus:Geniohyoid
xref: SCTID:244828000
property_value: UBPROP:0000001 "The geniohyoid is a muscle that attaches to the mandible and the hyoid apparatus and is innervated by C1.[FEED]" xsd:string
is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle
is_a: UBERON:0011151 ! jaw depressor muscle
relationship: has_muscle_insertion UBERON:0001685 {source="dbpedia"} ! hyoid bone
relationship: has_muscle_nerve UBERON:0001650 {notes="C1 via the hypoglossal nerve", source="dbpedia"} ! hypoglossal nerve
relationship: has_muscle_origin UBERON:0006606 {source="dbpedia"} ! mandibular symphysis
[Term]
id: UBERON:0001566
name: cricothyroid muscle
def: "The cricothyroid muscle attaches to the anterolateral aspect of the cricoid and the inferior cornu and lower lamina of the thyroid cartilage, tilting the thyroid forwards and tensing the vocal cords. It is the only laryngeal muscle supplied by the external branch of the superior laryngeal nerve (rather than the recurrent laryngeal nerve). [WP,unvetted]." [Wikipedia:Cricothyroid_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cricothyroid" EXACT []
synonym: "cricothyroideus" EXACT []
synonym: "musculus cricothyroideus" EXACT [FMA:46417, FMA:TA]
synonym: "musculus cricothyroideus" RELATED LATIN [Wikipedia:Cricothyroid_muscle]
xref: EMAPA:19270
xref: FMA:46417
xref: http://upload.wikimedia.org/wikipedia/commons/f/f4/Musculuscricothyreoideus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Musculuscricothyreoideus.png/200px-Musculuscricothyreoideus.png
xref: MA:0002284
xref: ncithesaurus:Cricothyroid_Muscle
xref: SCTID:244809007
is_a: UBERON:0006328 ! laryngeal intrinsic muscle
relationship: has_muscle_insertion UBERON:0001738 {notes="Inferior cornu and lamina of the thyroid cartilage", source="dbpedia"} ! thyroid cartilage
relationship: has_muscle_nerve UBERON:0001759 {source="dbpedia", notes="external laryngeal branch of the vagus"} ! vagus nerve
relationship: has_muscle_origin UBERON:0002375 {notes="Anterior and lateral cricoid cartilage", source="dbpedia"} ! cricoid cartilage
[Term]
id: UBERON:0001567
name: cheek
def: "Cheeks constitute the area of the face below the eyes and between the nose and the left or right ear. It is fleshy in humans and other mammals, the skin being suspended by the chin and the jaws, and forming the lateral wall of the human mouth, visibly touching the cheekbone below the eye. In vertebrates, markings on the cheek area (malar stripes/spots/... ), particularly immediately beneath the eye, often serve as important distinguishing features between species or individuals. 'Buccal' means relating to the cheek. In humans, the region is innervated by the buccal nerve. The inside of the cheek (forming part of the mouth cavity) is lined with a mucous membrane. It is the most common location from which a DNA sample can be taken (during a cheek swab). The cheeks are covered externally by hairy skin, and internally by stratified squamous epithelium. This is mostly smooth, but may have aborally directed papillae . The mucosa is supplied with secretions from the Buccal glands, which are arranged in superior and inferior groups. In carnivores, the superior buccal gland is large and discrete: the Zygomatic gland. During mastication (chewing), the cheeks and tongue between them serve to keep the food between the teeth. [WP,unvetted]." [Wikipedia:Cheek]
subset: uberon_slim
synonym: "buccae" RELATED LATIN [Wikipedia:Cheek]
synonym: "cheek" BROAD []
xref: BTO:0001754
xref: FMA:46476
xref: GAID:65
xref: galen:Cheek
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Chica_cachetona.jpg/200px-Chica_cachetona.jpg
xref: MA:0002475
xref: MESH:A.01.456.505.173
xref: ncithesaurus:Cheek
xref: OpenCyc:Mx4rvVi5WZwpEbGdrcN5Y29ycA
xref: SCTID:182325008
xref: TAO:0002113
property_value: UBPROP:0000001 "Surface structure that includes the scales, skin, and muscles that are located ventral and posterior to the eye.[TAO]" xsd:string
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0004089 ! midface
[Term]
id: UBERON:0001568
name: muscle of larynx
def: "the muscles associated with the larynx." [MP:0002263]
comment: This class was created automatically from a combination of ontologies
synonym: "laryngeal muscle" EXACT []
synonym: "larynx muscle" EXACT []
synonym: "larynx muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of larynx" EXACT [OBOL:automatic]
xref: BTO:0001626
xref: FMA:46562
xref: GAID:144
xref: MA:0001768
xref: MESH:A.02.633.567.500
xref: ncithesaurus:Laryngeal_Muscle
xref: SCTID:181744001
is_a: UBERON:0002377 ! muscle of neck
is_a: UBERON:0003831 ! respiratory system muscle
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001737
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0001569
name: constrictor muscle of pharynx
comment: TODO - evaluate taxonomic specificity - functional definition?
subset: uberon_slim
synonym: "pharyngeal constrictor muscle" EXACT []
xref: EMAPA:18964
xref: FMA:46620
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Musculusconstrictorpharyngissuperior.png/200px-Musculusconstrictorpharyngissuperior.png
xref: MA:0002278
xref: SCTID:244799007
is_a: UBERON:0000933 ! pharyngeal muscle
[Term]
id: UBERON:0001570
name: inferior pharyngeal constrictor
def: "The Inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
subset: uberon_slim
synonym: "constrictor inferior" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "constrictor pharyngis inferior" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "constrictores pharyngis caudales" EXACT []
synonym: "inferior constrictor" EXACT [FMA:46623]
synonym: "inferior constrictor" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "inferior constrictor muscle" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "inferior constrictor of pharynx" EXACT [FMA:46623]
synonym: "inferior constrictor pharyngeus" EXACT [FMA:46623]
synonym: "inferior pharyngeal constrictor" RELATED [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
synonym: "musculus constrictor pharyngis inferior" EXACT [FMA:TA]
synonym: "musculus constrictor pharyngis inferior" EXACT [FMA:46623, FMA:TA]
synonym: "musculus constrictor pharyngis inferior" RELATED LATIN [Wikipedia:Inferior_pharyngeal_constrictor_muscle]
xref: FMA:46623
xref: http://upload.wikimedia.org/wikipedia/commons/2/22/Musculusconstrictorpharyngisinferior.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Musculusconstrictorpharyngisinferior.png/200px-Musculusconstrictorpharyngisinferior.png
xref: MA:0002279
xref: SCTID:244803008
property_value: UBPROP:0000001 "This is a pharyngeal arch 4/6 muscle that is integral to the pharyngeal tube, participates in oral/pharyngeal behaviors, is innervated by the pharyngeal plexus of the vagus n. and attaches to the laryngeal cartilages and the midline raphe.[FEED]" xsd:string
is_a: UBERON:0001569 ! constrictor muscle of pharynx
relationship: has_muscle_origin UBERON:0001738 {notes="cricoid and thyroid cartilage", source="dbpedia"} ! thyroid cartilage
relationship: has_muscle_origin UBERON:0002375 {notes="cricoid and thyroid cartilage", source="dbpedia"} ! cricoid cartilage
[Term]
id: UBERON:0001571
name: genioglossus
def: "Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue." [VHOG:0000847, Wikipedia:Genioglossus_muscle]
comment: taxon notes: Makes up bulk of tongue in frogs and salamanders; makes up entire tongue in caecilians. [AAO:0010660]
subset: uberon_slim
synonym: "genioglossus muscle" EXACT []
synonym: "musculus genioglossus" EXACT []
xref: AAO:0010660
xref: EHDAA2:0000704
xref: EHDAA:9150
xref: EMAPA:18276
xref: EMAPA:18881
xref: FMA:46690
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Genioglossus.png/200px-Genioglossus.png
xref: MA:0002307
xref: ncithesaurus:Genioglossus
xref: SCTID:244784007
xref: VHOG:0000847
property_value: UBPROP:0000001 "Makes up bulk of tongue in frogs and salamanders; makes up entire tongue in caecilians.[AAO]" xsd:string
property_value: UBPROP:0000001 "see Intrinsic Tongue.[FEED]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO]" xsd:string
is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue
relationship: develops_from UBERON:0010059 {source="EHDAA2"} ! hypoglossal cord
relationship: has_muscle_nerve UBERON:0001650 {source="dbpedia"} ! hypoglossal nerve
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0001572
name: hyoglossus muscle
def: "The Hyoglossus, thin and quadrilateral, arises from the side of the body and from the whole length of the greater cornu of the hyoid bone, and passes almost vertically upward to enter the side of the tongue, between the Styloglossus and Longitudinalis inferior. The hyoglossus depresses and retracts the tongue makes the dorsum more convex The fibers arising from the body of the hyoid bone overlap those from the greater cornu. It is important in singing. Structures passing medially to the hyoglossus muscle are the lingual vein and lingual artery. Laterally, in between the hyoglossus muscle and the mylohyoid muscle lay several important structures (from superior in inferior): submandibular gland, submandibular duct, lingual nerve, vena comitans of hypoglossal nerve, and the hypoglossal nerve. Note, posteriorly, the lingual nerve is superior to the submandibular duct and a portion of the submandibular salivary gland protrudes into the space between the hyoglossus and mylohyoid muscles. [WP,unvetted]." [Wikipedia:Hyoglossus_muscle]
subset: uberon_slim
synonym: "hyoglossus" EXACT [Wikipedia:Hyoglossus]
xref: AAO:0010663
xref: EMAPA:18277
xref: EMAPA:18882
xref: FMA:46691
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Hyoglossus.png/200px-Hyoglossus.png
xref: MA:0002317
xref: ncithesaurus:Hyoglossus_Muscle
xref: SCTID:244785008
property_value: UBPROP:0000001 "Makes up part of the tongue in frogs and salamanders.[AAO]" xsd:string
property_value: UBPROP:0000001 "The hyoglossus is a muscle that attaches to the hyoid and tongue and is innervated by Cranial Nerve XII.[FEED]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO]" xsd:string
is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue
relationship: has_muscle_insertion UBERON:0001723 ! tongue
relationship: has_muscle_nerve UBERON:0001650 {source="dbpedia"} ! hypoglossal nerve
relationship: has_muscle_origin UBERON:0001685 {source="dbpedia", notes="lingual process in horse"} ! hyoid bone
[Term]
id: UBERON:0001573
name: styloglossus
def: "The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]." [Wikipedia:Styloglossus]
subset: uberon_slim
synonym: "musculus styloglossus" RELATED LATIN [Wikipedia:Styloglossus]
synonym: "syloglossus muscle" EXACT []
xref: EMAPA:18279
xref: EMAPA:18884
xref: FMA:46692
xref: http://upload.wikimedia.org/wikipedia/commons/1/16/Styloglossus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Styloglossus.png/200px-Styloglossus.png
xref: MA:0002387
xref: ncithesaurus:Styloglossus
property_value: UBPROP:0000001 "Styloglossus is a muscle that attaches to the tongue and stylohyal and is innervated by Cranial Nerve XII.[FEED]" xsd:string
is_a: UBERON:0001575 {source="FMA"} ! extrinsic muscle of tongue
relationship: has_muscle_insertion UBERON:0001723 {notes="tip and sides of tongue", source="dbpedia"} ! tongue
relationship: has_muscle_nerve UBERON:0001650 {source="dbpedia"} ! hypoglossal nerve
relationship: has_muscle_origin UBERON:0003960 {source="dbpedia"} ! styloid process of temporal bone
[Term]
id: UBERON:0001574
name: palatoglossus muscle
def: "The palatoglossus, glossopalatinus, or palatoglossal muscle is a small fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the glossopalatine arch. It arises from the anterior surface of the soft palate, where it is continuous with the muscle of the opposite side, and passing downward, forward, and lateralward in front of the palatine tonsil, is inserted into the side of the tongue, some of its fibers spreading over the dorsum, and others passing deeply into the substance of the organ to intermingle with the Transversus linguæ. [WP,unvetted]." [Wikipedia:Palatoglossus_muscle]
subset: uberon_slim
synonym: "musculus palatoglossus" RELATED LATIN [Wikipedia:Palatoglossus_muscle]
synonym: "palatoglossal" EXACT []
synonym: "palatoglossal muscle" EXACT []
synonym: "palatoglossus" EXACT []
xref: EMAPA:18278
xref: EMAPA:18883
xref: FMA:46697
xref: http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray1028.png/200px-Gray1028.png
xref: MA:0002351
xref: ncithesaurus:Palatoglossus_Muscle
xref: SCTID:244783001
property_value: UBPROP:0000001 "Palatoglossus is a muscle that attaches to the soft palate and the tongue and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED]" xsd:string
is_a: UBERON:0003682 ! palatal muscle
relationship: has_muscle_insertion UBERON:0001723 {source="dbpedia"} ! tongue
relationship: has_muscle_nerve UBERON:0001759 {source="dbpedia"} ! vagus nerve
relationship: has_muscle_origin UBERON:0003216 {source="dbpedia", notes="aponeurosis"} ! hard palate
[Term]
id: UBERON:0001575
name: extrinsic muscle of tongue
comment: This class was created automatically from a combination of ontologies
synonym: "extrinsic tongue muscle" EXACT []
xref: EHDAA2:0002063
xref: EHDAA:9148
xref: EMAPA:18275
xref: EMAPA:18880
xref: FMA:46699
xref: MA:0002296
xref: SCTID:244782006
xref: VHOG:0000825
is_a: UBERON:0000378 ! tongue muscle
is_a: UBERON:0002036 {source="EHDAA2"} ! striated muscle tissue
relationship: develops_from UBERON:0011332 ! extrinsic tongue pre-muscle mass
relationship: part_of UBERON:0003273 {source="EHDAA2"} ! skeletal muscle of tongue
[Term]
id: UBERON:0001576
name: intrinsic muscle of tongue
comment: This class was created automatically from a combination of ontologies
synonym: "intrinsic lingual muscle" EXACT []
synonym: "intrinsic tongue muscle" EXACT []
xref: EHDAA2:0002064
xref: EHDAA:9152
xref: EMAPA:18280
xref: EMAPA:18885
xref: FMA:46701
xref: MA:0002327
xref: SCTID:244788005
xref: VHOG:0000748
property_value: UBPROP:0000001 "The intrinsic tongue muscles are an integral part of the tongue that are innervated by Cranial Nerve XII.[FEED]" xsd:string
is_a: UBERON:0000378 ! tongue muscle
is_a: UBERON:0002036 {source="EHDAA2"} ! striated muscle tissue
relationship: develops_from UBERON:0010059 {source="EHDAA2"} ! hypoglossal cord
relationship: part_of UBERON:0003273 {source="EHDAA2"} ! skeletal muscle of tongue
[Term]
id: UBERON:0001577
name: facial muscle
def: "The facial muscles are a group of striated muscles innervated by the facial nerve that, among other things, control facial expression. These muscles are also called mimetic muscles. [WP,unvetted]." [Wikipedia:Facial_muscles]
comment: AO notes: Check the MA class cranial/facial muscle, this may be broader. Editor notes: currently defined by innervation, check this. Editor notes: PMID:19531159 states that facial muscles are hyoid muscles
subset: uberon_slim
synonym: "cranial/facial muscle" RELATED [MA:0000579]
synonym: "face muscle" EXACT []
synonym: "face muscle organ" EXACT [OBOL:automatic]
synonym: "facial muscle" EXACT []
synonym: "facial nerve innervated muscle" EXACT [UBERON:cjm]
synonym: "mimetic muscles" RELATED [Wikipedia:Facial_muscles]
synonym: "muscle of face" EXACT [FMA:46751]
synonym: "muscle of facial expression" RELATED [Wikipedia:Facial_muscles]
synonym: "muscle organ of face" EXACT [OBOL:automatic]
synonym: "muscles of facial expression" RELATED [Wikipedia:Facial_muscles]
synonym: "musculi faciei" RELATED LATIN [Wikipedia:Facial_muscles]
xref: EMAPA:25133
xref: FMA:46751
xref: GAID:143
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray378.png/200px-Gray378.png
xref: MA:0000579
xref: MESH:A.02.633.567.400
xref: ncithesaurus:Facial_Muscle
xref: SCTID:25903009
xref: XAO:0001013
is_a: UBERON:0002376 ! muscle of head
relationship: has_muscle_nerve UBERON:0001647
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: has_muscle_nerve UBERON:0001647 ! facial nerve
disjoint_from: UBERON:0003681 ! masticatory muscle
relationship: develops_from UBERON:0003066 {source="Wikipedia"} ! pharyngeal arch 2
relationship: has_muscle_nerve UBERON:0001647 ! facial nerve
relationship: part_of UBERON:0004473 ! musculature of face
[Term]
id: UBERON:0001578
name: orbicularis oculi
def: "The 'orbicularis oculi' is a muscle in the face that closes the eyelids. It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]." [Wikipedia:Orbicularis_oculi_muscle]
subset: uberon_slim
synonym: "musculus orbicularis oculi" RELATED LATIN [Wikipedia:Orbicularis_oculi_muscle]
synonym: "orbicularis oculi muscle" RELATED [Wikipedia:Orbicularis_oculi_muscle]
synonym: "tensor tarsi" RELATED [Wikipedia:Orbicularis_oculi_muscle]
xref: FMA:46779
xref: http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gray379.png/200px-Gray379.png
xref: MA:0001254
xref: ncithesaurus:Orbicularis_Oculi
xref: SCTID:244726006
is_a: UBERON:0001577 ! facial muscle
is_a: UBERON:0004277 ! eye muscle
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: has_muscle_nerve UBERON:0001647 {notes="branches of the facial nerve and Zygomatic branches of Facial Nerve", source="dbpedia"} ! facial nerve
relationship: has_muscle_origin UBERON:0000209 {source="dbpedia"} ! tetrapod frontal bone
relationship: has_muscle_origin UBERON:0001680 {source="dbpedia"} ! lacrimal bone
relationship: has_muscle_origin UBERON:0004724 {source="dbpedia"} ! medial palpebral ligament
relationship: part_of UBERON:0001601 ! extra-ocular muscle
[Term]
id: UBERON:0001579
name: olfactory nerve
def: "Segment of neural tree organ which is continuous with the olfactory epithelium and an olfactory bulb. The olfactory nerve supplies the nasal organ." [ISBN:0471209627, Wikipedia:Olfactory_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "CN-I" RELATED []
synonym: "cranial nerve I" RELATED []
synonym: "fila olfactoria" RELATED [BTO:0003648]
synonym: "first cranial nerve" EXACT []
synonym: "nerve of smell" RELATED [BTO:0003648]
synonym: "nervus olfactorius" RELATED LATIN [Wikipedia:Olfactory_nerve]
synonym: "nervus olfactorius" RELATED [BTO:0003648]
synonym: "nervus olfactorius [i]" EXACT [FMA:46787, FMA:TA]
synonym: "olfactory fila" RELATED [BTO:0003648]
synonym: "olfactory I" EXACT [EHDAA2:0001293]
synonym: "olfactory i nerve" EXACT []
synonym: "Olfactory nerve [I]" EXACT []
xref: AAO:0010088
xref: BTO:0003648
xref: EHDAA2:0001293
xref: EHDAA:6672
xref: EMAPA:17797
xref: FMA:46787
xref: GAID:830
xref: http://upload.wikimedia.org/wikipedia/commons/b/be/Gray771.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray771.png/200px-Gray771.png
xref: MA:0001096
xref: MESH:A.08.800.800.120.640
xref: ncithesaurus:Olfactory_Nerve
xref: NIF_GrossAnatomy:birnlex_1319
xref: OpenCyc:Mx4rvZuXAJwpEbGdrcN5Y29ycA
xref: SCTID:180937006
xref: TAO:0000249
xref: VHOG:0000703
xref: XAO:0000426
xref: ZFA:0000249
property_value: UBPROP:0000001 "Nerve that carries information from the olfactory epithelium through the olfactory bulb to the olfactory cortex of the telencephalon.[AAO]" xsd:string
is_a: UBERON:0001785 ! cranial nerve
relationship: develops_from UBERON:0003050 {source="Wikipedia"} ! olfactory placode
[Term]
id: UBERON:0001580
name: levator labii superioris
def: "The levator labii superioris (or quadratus labii superioris) is a broad sheet, the origin of which extends from the side of the nose to the zygomatic bone. Its medial fibers form the angular head, which arises by a pointed extremity from the upper part of the frontal process of the maxilla and passing obliquely downward and lateralward divides into two slips. One of these is inserted into the greater alar cartilage and skin of the nose; the other is prolonged into the lateral part of the upper lip, blending with the infraorbital head and with the Orbicularis oris. The intermediate portion or infraorbital head arises from the lower margin of the orbit immediately above the infraorbital foramen, some of its fibers being attached to the maxilla, others to the zygomatic bone. Its fibers converge, to be inserted into the muscular substance of the upper lip between the angular head and the Caninus. The lateral fibers, forming the zygomatic head, arise from the malar surface of the zygomatic bone immediately behind the zygomaticomaxillary suture and pass downward and medialward to the upper lip. [WP,unvetted]." [Wikipedia:Levator_labii_superioris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus levator labii superioris" RELATED LATIN [Wikipedia:Levator_labii_superioris]
xref: FMA:46805
xref: http://upload.wikimedia.org/wikipedia/commons/8/8f/Levator_labii_superioris.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/Levator_labii_superioris.png/200px-Levator_labii_superioris.png
xref: MA:0002333
xref: ncithesaurus:Levator_Labii_Superioris
is_a: UBERON:0001577 ! facial muscle
relationship: has_muscle_insertion UBERON:0001458 {source="dbpedia", notes="Skin and muscle of the upper lip"} ! skin of lip
relationship: has_muscle_insertion UBERON:0001834 {source="dbpedia", notes="Skin and muscle of the upper lip"} ! upper lip
relationship: has_muscle_nerve UBERON:0001647 {notes="zygomatic branch", source="dbpedia"} ! facial nerve
[Term]
id: UBERON:0001581
name: depressor labii inferioris
def: "The depressor labii inferioris (or quadratus labii inferioris) is a facial muscle that helps lower the bottom lip. [WP,unvetted]." [Wikipedia:Depressor_labii_inferioris_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46816
xref: http://upload.wikimedia.org/wikipedia/commons/9/96/Depressor_labii_inferioris.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Depressor_labii_inferioris.png/200px-Depressor_labii_inferioris.png
xref: MA:0002287
xref: ncithesaurus:Depressor_Labii_Inferioris
is_a: UBERON:0001577 ! facial muscle
relationship: has_muscle_insertion UBERON:0001835 {notes="integument of the lower lip Orbicularis oris fibers its fellow of the opposite side", source="dbpedia"} ! lower lip
relationship: has_muscle_insertion UBERON:0010933 {notes="integument of the lower lip Orbicularis oris fibers its fellow of the opposite side", source="dbpedia"} ! orbicularis oris muscle
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia"} ! facial nerve
relationship: has_muscle_origin UBERON:0001684 {notes="oblique line of the mandible between the symphysis and the mental foramen", source="dbpedia"} ! mandible
[Term]
id: UBERON:0001582
name: buccinator muscle
def: "a thin quadrilateral muscle, occupying the interval between the maxilla and the mandible at the side of the face." [Wikipedia:Buccinator_muscle]
subset: uberon_slim
synonym: "buccinator" EXACT []
synonym: "buccinatorius" EXACT []
synonym: "musculus buccinator" EXACT []
synonym: "musculus buccinator" RELATED LATIN [Wikipedia:Buccinator_muscle]
xref: FMA:46834
xref: http://upload.wikimedia.org/wikipedia/commons/d/df/Buccinator.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Buccinator.jpg/200px-Buccinator.jpg
xref: MA:0002272
xref: ncithesaurus:Buccinator
xref: SCTID:244747005
property_value: UBPROP:0000001 "The buccinator is a muscle that is attached to the mandible, skin, pterygomandibular raphe and maxilla, and is innervated by Cranial Nerve VII and participates in oropharyngeal behavior.[FEED]" xsd:string
is_a: UBERON:0001577 {source="FMA"} ! facial muscle
relationship: has_muscle_insertion UBERON:0011386 {source="FEED", notes="dbpedia says: in the fibers of the orbicularis oris"} ! facial modiolus
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia", notes="buccal branch"} ! facial nerve
relationship: has_muscle_origin UBERON:0003700 {comment="not strictly an attachment site", source="dbpedia", notes="from the alveolar processes of the maxillary bone and mandible temporomandibular joint"} ! temporomandibular joint
relationship: has_muscle_origin UBERON:0004528 {source="dbpedia", notes="from the alveolar processes of the maxillary bone and mandible temporomandibular joint"} ! alveolar ridge of mandible
[Term]
id: UBERON:0001583
name: extrinsic auricular muscle
def: "auricular muscle attaching the cartilage of the ear to the epicranial aponeurosis. The 3 extrinsic auricular muscles in humans are: anterior auricular muscle superior auricular muscle posterior auricular muscle [WP,modified]." [http://www.daviddarling.info/encyclopedia/A/auricle.html, Wikipedia:Auriculares_muscles]
comment: Note the Wikipedia topic refers to the extrinsic auricular muscles
synonym: "musculi auriculares" BROAD LATIN [Wikipedia:Auriculares_muscles]
xref: FMA:46854
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/0/00/Gray906.png/250px-Gray906.png
xref: MA:0001230
is_a: UBERON:0001595 {source="FMA"} ! auricular muscle
relationship: has_muscle_insertion UBERON:0001848 ! auricular cartilage
relationship: has_muscle_origin UBERON:0006661 ! epicranial aponeurosis
[Term]
id: UBERON:0001584
name: left subclavian artery
def: "In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib. [WP,unvetted]." [Wikipedia:Subclavian_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:4694
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0002046
xref: ncithesaurus:Left_Subclavian_Artery
xref: OpenCyc:Mx4rtW7hw6gEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA
xref: SCTID:244245001
is_a: UBERON:0001533 ! subclavian artery
[Term]
id: UBERON:0001585
name: anterior vena cava
def: "Trunk of systemic vein which is formed by the union of the right and left brachiocephalic veins and terminates in the right atrium." [Wikipedia:Superior_vena_cava]
comment: The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). In the mouse, The right pulmonary vein passes dorsal to the right superior vena cava, the left pulmonary dorsal to the left superior vena cava (Biology of the Laboratory Mouse, Green).
subset: uberon_slim
synonym: "superior vena cava" EXACT [FMA:4720]
synonym: "vena cava superior" RELATED [BTO:0002683]
synonym: "vena cava superior, vena maxima" RELATED LATIN [Wikipedia:Superior_vena_cava]
xref: BTO:0002683
xref: EHDAA2:0001962
xref: EHDAA:8726
xref: EMAPA:18417
xref: FMA:4720
xref: GAID:549
xref: galen:SuperiorVenaCava
xref: http://upload.wikimedia.org/wikipedia/commons/b/b4/Venenwinkel.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Venenwinkel.png/200px-Venenwinkel.png
xref: MA:0000481
xref: MESH:A.07.231.908.949.815
xref: ncithesaurus:Superior_Vena_Cava
xref: SCTID:181368006
xref: VHOG:0001195
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001586
name: internal jugular vein
def: "The two internal jugular veins collect the blood from the brain, the superficial parts of the face, and the neck. [WP,unvetted]." [Wikipedia:Internal_jugular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "internal jugular" EXACT [EHDAA2:0000877]
synonym: "internal jugular venous tree" EXACT []
synonym: "vena jugularis interna" RELATED LATIN [Wikipedia:Internal_jugular_vein]
xref: AAO:0010236
xref: EHDAA2:0000877
xref: EHDAA:5407
xref: EMAPA:17620
xref: FMA:4724
xref: galen:InternalJugularVein
xref: http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray562.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray562.png/200px-Gray562.png
xref: MA:0002157
xref: ncithesaurus:Internal_Jugular_Vein
xref: OpenCyc:Mx4rvqdb95wpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0000878
xref: SCTID:181372005
xref: XAO:0000382
property_value: UBPROP:0000001 "Vein which receives many veins draining the palate, brain, and the orbital, nasal, and auditory regions.[AAO]" xsd:string
is_a: UBERON:0004711 ! jugular vein
[Term]
id: UBERON:0001587
name: subclavian vein
def: "In human anatomy, the subclavian veins are two large veins, one on either side of the body. Its diameter is approximately that of the small finger. It is divided into right and left subclavian vein. [WP,unvetted]." [Wikipedia:Subclavian_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "subclavian venous tree" EXACT []
synonym: "vena subclavia" RELATED LATIN [Wikipedia:Subclavian_vein]
xref: AAO:0010510
xref: EHDAA2:0001934
xref: EHDAA:4455
xref: EMAPA:17621
xref: FMA:4725
xref: GAID:546
xref: galen:SubclavianVein
xref: http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9e/Gray1174.png/200px-Gray1174.png
xref: MA:0002221
xref: MESH:A.07.231.908.877
xref: ncithesaurus:Subclavian_Vein
xref: OpenCyc:Mx4rvvvtMZwpEbGdrcN5Y29ycA
xref: SCTID:181388005
property_value: UBPROP:0000001 "Vein which collects blood from the forelimb via the brachial veins and from the muscles and skin of the trunk via the anterior epigastric and lateral veins.[AAO]" xsd:string
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001588
name: vertebral vein
def: "The vertebral vein is formed in the suboccipital triangle, from numerous small tributaries which spring from the internal vertebral venous plexuses and issue from the vertebral canal above the posterior arch of the atlas. They unite with small veins from the deep muscles at the upper part of the back of the neck, and form a vessel which enters the foramen in the transverse process of the atlas, and descends, forming a dense plexus around the vertebral artery, in the canal formed by the foramina transversaria of the cervical vertebrae. This plexus ends in a single trunk, which emerges from the foramen transversarium of the sixth cervical vertebra, and opens at the root of the neck into the back part of the innominate vein near its origin, its mouth being guarded by a pair of valves. On the right side, it crosses the first part of the subclavian artery. [WP,unvetted]." [Wikipedia:Vertebral_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vena vertebralis" RELATED LATIN [Wikipedia:Vertebral_vein]
xref: AAO:0010509
xref: FMA:4727
xref: http://upload.wikimedia.org/wikipedia/commons/c/c9/Gray563.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c9/Gray563.png/200px-Gray563.png
xref: MA:0002262
xref: ncithesaurus:Vertebral_Vein
xref: OpenCyc:Mx4rwKt8xJwpEbGdrcN5Y29ycA
xref: SCTID:303961000
property_value: UBPROP:0000001 "Vein which collects blood from the muscles of the neck and drains into the internal jugular.[AAO]" xsd:string
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001589
name: internal thoracic vein
def: "In human anatomy, the internal thoracic vein (previously known as the internal mammary vein) is a vessel that drains the chest wall and mamma, a term used for breast in anatomy. Bilaterally, it arises from the superior epigastric vein, accompanies the internal thoracic artery along its course and terminates in the brachiocephalic vein. [WP,unvetted]." [Wikipedia:Internal_thoracic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vena thoracica interna" RELATED LATIN [Wikipedia:Internal_thoracic_vein]
xref: EMAPA:18641
xref: FMA:4729
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png
xref: MA:0002237
xref: ncithesaurus:Internal_Thoracic_Vein
xref: SCTID:281056008
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001590
name: pericardiacophrenic vein
def: "Vena comitans of the pericardiacophrenic arteries." [Wikipedia:Pericardiacophrenic_veins]
comment: This class was created automatically from a combination of ontologies
synonym: "venae pericardiacophrenicae" RELATED LATIN [Wikipedia:Pericardiacophrenic_veins]
xref: FMA:4742
xref: http://upload.wikimedia.org/wikipedia/commons/7/75/Gray530.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Gray530.png/200px-Gray530.png
xref: MA:0002187
xref: ncithesaurus:Pericardiacophrenic_Vein
xref: SCTID:361626007
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001591
name: thymic vein
comment: This class was created automatically from a combination of ontologies
synonym: "thymic tributary of brachiocephalic vein" EXACT []
xref: FMA:4747
xref: MA:0002246
xref: ncithesaurus:Thymic_Vein
xref: SCTID:303432009
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001592
name: bronchial vein
def: "The bronchial veins are small vessels that return blood from the larger bronchi and structures at the roots of the lungs. The right side drains into the azygos vein, while the left side drains into the left superior intercostal vein or the accessory hemiazygos vein. The bronchial veins are counterparts to the bronchial arteries. The veins, however, do not return all of the blood supplied by the arteries; much of the blood that is carried in the bronchial arteries is returned to the heart via the pulmonary veins. [WP,unvetted]." [Wikipedia:Bronchial_veins]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bronchial venous tree" EXACT []
xref: FMA:4749
xref: MA:0002088
xref: ncithesaurus:Bronchial_Vein
xref: SCTID:198293000
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001593
name: venous plexus
def: "a congregation of multiple veins." [Wikipedia:Venous_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "rete venosum, plexus venosus" RELATED LATIN [Wikipedia:Venous_plexus]
synonym: "venous network" EXACT []
xref: FMA:4767
xref: http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png
xref: MA:0000069
xref: SCTID:322151008
is_a: UBERON:0005629 ! vascular plexus
relationship: has_part UBERON:0001638 ! vein
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001594
name: azygos vein
def: "An unpaired vein which in humans arises from the right ascending lumbar vein or the vena cava, enters the thorax through the aortic orifice in the diaphragm, and terminates in the superior vena cava; unlike humans, mice have a single and left-sided azygos vein that develops from the paired embryonic cardinal venous system and drains most of the right and left thoracic walls into the left anterior vena cava[MP]." [MP:0011569, Wikipedia:Azygos_vein]
comment: Editor notes: check development relationships in different species
subset: uberon_slim
synonym: "azygos venous tree" EXACT []
synonym: "vena azygos" RELATED LATIN [Wikipedia:Azygos_vein]
xref: EMAPA:18250
xref: FMA:4838
xref: GAID:528
xref: galen:AzygosVein
xref: http://upload.wikimedia.org/wikipedia/commons/b/b4/Azygos_vein.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Azygos_vein.png/200px-Azygos_vein.png
xref: MA:0002085
xref: MESH:A.07.231.908.106
xref: ncithesaurus:Azygos_Vein
is_a: UBERON:0001638 ! vein
relationship: develops_from UBERON:0008268 {source="ISBN-10:0443065837"} ! right supracardinal vein
[Term]
id: UBERON:0001595
name: auricular muscle
synonym: "attolens aurem muscle" RELATED [Wikipedia:Auricular_muscles]
synonym: "attrahens aurem muscle" RELATED [Wikipedia:Auricular_muscles]
synonym: "auriculares" RELATED [Wikipedia:Auricular_muscles]
synonym: "auriculares anterior" RELATED [Wikipedia:Auricular_muscles]
synonym: "auriculares muscles" RELATED [Wikipedia:Auricular_muscles]
synonym: "auricularis" RELATED [Wikipedia:Auricular_muscles]
synonym: "auricularis muscle" RELATED [Wikipedia:Auricular_muscles]
synonym: "auricularis muscles" RELATED [Wikipedia:Auricular_muscles]
synonym: "muscle of auricle" EXACT []
synonym: "temporoparietalis" RELATED [Wikipedia:Auricular_muscles]
xref: FMA:48966
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray906.png/200px-Gray906.png
xref: MA:0001229
xref: SCTID:244757006
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0002376 ! muscle of head
relationship: attaches_to UBERON:0001848 ! auricular cartilage
relationship: part_of UBERON:0001757 {source="MA"} ! pinna
[Term]
id: UBERON:0001596
name: intrinsic auricular muscle
def: "auricular muscle attached only to the cartilage of the ear and not to the epicranial aponeurosis" [http://www.daviddarling.info/encyclopedia/A/auricle.html]
xref: FMA:48967
xref: MA:0001231
xref: SCTID:244762007
is_a: UBERON:0001595 {source="FMA"} ! auricular muscle
relationship: part_of UBERON:0001757 {source="FMA"} ! pinna
[Term]
id: UBERON:0001597
name: masseter muscle
def: "jaw muscle of therapsids which permits the longitudinal, grinding, motions of the jaw. The masseter is derived from the m. adductor mandibulae externus, which originates in the adductor chamber (in the temporal fenestra) and inserts on the coronoid process and internal surface of the lower jaw.[Palaeos]." [http://palaeos.com/vertebrates/glossary/glossaryM.html, Wikipedia:Masseter_muscle]
comment: The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati)[VHOG]
subset: uberon_slim
synonym: "masseter" RELATED [BTO:0001755]
synonym: "musculus masseter" RELATED LATIN [Wikipedia:Masseter_muscle]
xref: BTO:0001755
xref: EFO:0001424
xref: EHDAA2:0001067
xref: EHDAA:10561
xref: EMAPA:25135
xref: FMA:48996
xref: http://upload.wikimedia.org/wikipedia/commons/7/78/Illu_head_neck_muscle.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/78/Illu_head_neck_muscle.jpg/200px-Illu_head_neck_muscle.jpg
xref: MA:0002343
xref: MESH:A.02.633.567.600.500
xref: ncithesaurus:Masseter_Muscle
xref: SCTID:181738000
xref: VHOG:0000823
property_value: UBPROP:0000001 "Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by masseteric nerve branches, and attaches to mandible and zygomatic arch.[FEED]" xsd:string
is_a: UBERON:0003681 {source="FMA"} ! masticatory muscle
relationship: has_muscle_antagonist UBERON:0005467 {source="dbpedia"} ! platysma
relationship: has_muscle_insertion UBERON:0004660 {source="dbpedia", notes="coronoid process ramus of mandible cementomaxillary tendon and cementomandibular tendon"} ! mandible coronoid process
relationship: has_muscle_nerve UBERON:0011321 ! masseteric nerve
relationship: has_muscle_origin UBERON:0002397 {source="dbpedia", notes="zygomatic arch and maxilla"} ! maxilla
relationship: has_muscle_origin UBERON:0002500 {source="dbpedia", notes="zygomatic arch and maxilla"} ! zygomatic arch
relationship: part_of UBERON:0001567 {source="FMA"} ! cheek
[Term]
id: UBERON:0001598
name: temporalis muscle
def: "The temporal muscle is one of the muscles of mastication. [WP,unvetted]." [Wikipedia:Temporal_muscle]
subset: uberon_slim
synonym: "musculus temporalis" EXACT [FMA:49006, FMA:TA]
synonym: "musculus temporalis" RELATED LATIN [Wikipedia:Temporal_muscle]
synonym: "temporal muscle" EXACT []
synonym: "temporalis" EXACT [MA:0002390]
xref: EHDAA2:0002001
xref: EHDAA:10565
xref: EMAPA:25138
xref: FMA:49006
xref: GAID:148
xref: http://upload.wikimedia.org/wikipedia/commons/d/d3/Gray382.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d3/Gray382.png/200px-Gray382.png
xref: MA:0002390
xref: MESH:A.02.633.567.600.850
xref: ncithesaurus:Temporal_Muscle
xref: SCTID:181739008
xref: VHOG:0000929
property_value: UBPROP:0000001 "Pharyngeal arch 1 muscle that is innervated by the deep temporal nerves and attaches to the wall of the braincase and mandible.[FEED]" xsd:string
is_a: UBERON:0003681 ! masticatory muscle
relationship: has_muscle_antagonist UBERON:0005467 {source="dbpedia"} ! platysma
relationship: has_muscle_insertion UBERON:0004660 {notes="coronoid process of the mandible.", source="dbpedia"} ! mandible coronoid process
relationship: has_muscle_nerve UBERON:0000375 {source="dbpedia"} ! mandibular nerve
relationship: part_of UBERON:0001444 ! subdivision of head
[Term]
id: UBERON:0001599
name: stapedius muscle
def: "The stapedius is the smallest skeletal muscle in the human body. At just over one millimeter in length, its purpose is to stabilize the smallest bone in the body, the stapes. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]." [Wikipedia:Stapedius_muscle]
subset: uberon_slim
synonym: "musculus stapedius" RELATED LATIN [Wikipedia:Stapedius_muscle]
synonym: "stapedius" EXACT [EHDAA2:0001909]
xref: EHDAA:9029
xref: EMAPA:18586
xref: FMA:49027
xref: GAID:164
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Musculusstapedius.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Musculusstapedius.png/200px-Musculusstapedius.png
xref: MA:0001220
xref: MESH:A.02.633.567.950
xref: ncithesaurus:Stapedius_Muscle
xref: SCTID:244780003
xref: VHOG:0000813
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0001577 ! facial muscle
is_a: UBERON:0004113 ! muscle of auditory ossicle
relationship: develops_from UBERON:0010929 ! stapedius pre-muscle condensation
relationship: has_muscle_insertion UBERON:0001687 {source="dbpedia", notes="neck of stapes"} ! stapes
relationship: has_muscle_nerve UBERON:0001647 {source="Kardong"} ! facial nerve
relationship: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0001600
name: tensor tympani
def: "the larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]." [Wikipedia:Tensor_tympani_muscle]
subset: uberon_slim
synonym: "eustachian muscle" EXACT []
synonym: "M. tensor tympani" RELATED [Wikipedia:Tensor_tympani_muscle]
synonym: "musculus tensor tympani" RELATED LATIN [Wikipedia:Tensor_tympani_muscle]
synonym: "tensor tympani muscle" RELATED [Wikipedia:Tensor_tympani_muscle]
synonym: "tympanic muscle" RELATED [Wikipedia:Tensor_tympani_muscle]
xref: EHDAA2:0002002
xref: EHDAA:10167
xref: EHDAA:10191
xref: EMAPA:18587
xref: FMA:49028
xref: GAID:166
xref: http://upload.wikimedia.org/wikipedia/commons/8/82/Gray912.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Gray912.png/200px-Gray912.png
xref: MA:0001221
xref: MESH:A.02.633.567.975
xref: ncithesaurus:Tensor_Tympani
is_a: UBERON:0004112 ! muscle of middle ear
is_a: UBERON:0004113 ! muscle of auditory ossicle
relationship: develops_from UBERON:0010935 ! tensor tympani pre-muscle condensation
relationship: has_muscle_insertion UBERON:0006722 {source="dbpedia", notes="handle of the malleus"} ! manubrium of malleus
relationship: has_muscle_nerve UBERON:0000375 {notes="medial pterygoid nerve from the mandibular nerve", source="dbpedia"} ! mandibular nerve
relationship: has_muscle_origin UBERON:0002393 {source="dbpedia"} ! pharyngotympanic tube
relationship: part_of UBERON:0004114 ! tympanic cavity
[Term]
id: UBERON:0001601
name: extra-ocular muscle
alt_id: UBERON:0006229
def: "Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extraocular_muscles]
comment: AO notes: BTO and MA consider this part of the eye; we follow them here (inferred from skeletal muscle). Not clear if omission from FMA is deliberate. Editor notes: todo - resolve discrepancies in which muscles are considered extra-ocular. Taxon notes: Mammals have 7 extra-ocular muscles, but humans lack the M. retractor bulbi. Note in ZFA this is the set of muscles.
subset: uberon_slim
subset: vertebrate_core
synonym: "extra-ocular skeletal muscle" EXACT []
synonym: "extraocular muscle" EXACT [FMA:49033]
synonym: "extraocular musculature" EXACT [ZFA:0000511]
synonym: "extraocular skeletal muscle" EXACT [MA:0001271]
synonym: "extrinsic eye muscle" EXACT [Obol:automatic]
synonym: "extrinsic muscle of eyeball" EXACT [FMA:49033]
synonym: "extrinsic ocular muscle" EXACT [EHDAA2:0000482]
synonym: "musculi externi bulbi oculi" RELATED LATIN [Wikipedia:Extraocular_muscles]
xref: AAO:0010028
xref: BTO:0001579
xref: EFO:0001921
xref: EHDAA2:0000482
xref: EHDAA:5729
xref: EMAPA:18234
xref: FMA:49033
xref: http://upload.wikimedia.org/wikipedia/commons/6/61/MRI_of_human_eye.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/MRI_of_human_eye.jpg/200px-MRI_of_human_eye.jpg
xref: MA:0001271
xref: SCTID:181150000
xref: TAO:0000511
xref: VHOG:0000549
xref: ZFA:0000511
property_value: UBPROP:0000001 "Muscles surrounding the eye (bulbus oculi) and having an effect on eye movements.[AAO]" xsd:string
is_a: UBERON:0004277 {source="MA"} ! eye muscle
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0006230 {source="EHDAA2"} ! extrinsic ocular pre-muscle mass
relationship: has_part UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle of eye
[Term]
id: UBERON:0001602
name: medial rectus
alt_id: UBERON:0004836
def: "The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]." [Wikipedia:Medial_rectus_muscle]
comment: Taxon notes (from VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331 [VHOG:0001127]
subset: uberon_slim
subset: vertebrate_core
synonym: "medial rectus extraocular muscle" EXACT [MA:0001281]
synonym: "medial rectus muscle" EXACT []
synonym: "musculus rectus medialis bulbi" RELATED LATIN [Wikipedia:Medial_rectus_muscle]
xref: FMA:49037
xref: http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png
xref: MA:0001281
xref: ncithesaurus:Medial_Rectus_Muscle
xref: SCTID:181151001
xref: TAO:0000301
xref: VHOG:0001127
xref: ZFA:0000301
is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle
relationship: has_muscle_nerve UBERON:0001643 {source="dbpedia", notes="inferior division of the oculomotor nerve"} ! oculomotor nerve
relationship: part_of UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0001603
name: lateral rectus extra-ocular muscle
alt_id: UBERON:0004837
def: "The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]." [Wikipedia:Lateral_rectus_muscle]
subset: uberon_slim
subset: vertebrate_core
synonym: "lateral rectus" EXACT [FMA:49038]
synonym: "lateral rectus extraocular muscle" EXACT [MA:0001280]
synonym: "lateral rectus muscle" EXACT []
synonym: "M. rectus lateralis" EXACT []
synonym: "musculus rectus lateralis" EXACT [AAO:0010107]
synonym: "musculus rectus lateralis bulbi" RELATED LATIN [Wikipedia:Lateral_rectus_muscle]
xref: AAO:0010107
xref: FMA:49038
xref: http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png
xref: MA:0001280
xref: ncithesaurus:Lateral_Rectus_Muscle
xref: SCTID:181152008
xref: TAO:0000383
xref: VHOG:0001129
xref: ZFA:0000383
property_value: UBPROP:0000001 "Cranial nerve VI innervated; lateral in the rectus group.[AAO]" xsd:string
is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle
disjoint_from: UBERON:0003250 ! rectus capitis lateralis
relationship: has_muscle_nerve UBERON:0001646 {source="dbpedia"} ! abducens nerve
[Term]
id: UBERON:0001604
name: levator palpebrae superioris
def: "The levator palpebrae superioris (or levator muscle of upper eyelid) is the muscle in the orbit that elevates the superior (upper) eyelid. [WP,unvetted]." [Wikipedia:Levator_palpebrae_superioris]
subset: uberon_slim
xref: FMA:49041
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png
xref: MA:0001272
xref: ncithesaurus:Levator_Palpebrae_Superioris
xref: SCTID:244774006
is_a: UBERON:0001601 {source="FMA"} ! extra-ocular muscle
is_a: UBERON:0003660 ! eyelid muscle
relationship: part_of UBERON:0001711 {source="FMA"} ! eyelid
[Term]
id: UBERON:0001605
name: ciliary muscle
def: "The ciliary muscle is a smooth muscle in the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]." [Wikipedia:Ciliary_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bowman`s muscles" RELATED [BTO:0000654]
synonym: "musculus ciliaris" RELATED LATIN [Wikipedia:Ciliary_muscle]
synonym: "musculus ciliarus" EXACT [BTO:0000654]
xref: BTO:0000654
xref: FMA:49151
xref: http://upload.wikimedia.org/wikipedia/commons/2/28/Gray872.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray872.png/200px-Gray872.png
xref: MA:0001269
xref: ncithesaurus:Ciliary_Muscle
xref: SCTID:280862009
is_a: UBERON:0003386 {source="MA"} ! smooth muscle of eye
is_a: UBERON:0011222 {source="FMA"} ! intra-ocular muscle
relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body
[Term]
id: UBERON:0001606
name: muscle of iris
def: "." [Wikipedia:Iris_muscle]
subset: uberon_slim
synonym: "iris muscle" EXACT []
synonym: "iris muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of iris" EXACT [OBOL:automatic]
xref: FMA:49154
xref: MA:0001287
xref: SCTID:280888007
is_a: UBERON:0011222 {source="FMA"} ! intra-ocular muscle
relationship: part_of UBERON:0001769
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0001607
name: sphincter pupillae
def: "The iris sphincter muscle (pupillary sphincter, circular muscle of iris, circular fibers) is a muscle in the part of the eye called the iris. It encircles the eye, appropriate to its function as a constrictor. It is found in vertebrates and some cephalopods. In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted]." [Wikipedia:Iris_sphincter_muscle]
comment: Taxon notes: WP says: It is found in vertebrates and some cephalopods; this class refers to the vertebrate structure. Function notes: constricts iris
subset: uberon_slim
synonym: "circular fibers" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "constrictor pupillae" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "iris constrictor" RELATED []
synonym: "iris constrictor muscle" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "iris sphincter" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "iris sphincter muscle" EXACT [BTO:0000656]
synonym: "M. sphincter pupillae" EXACT []
synonym: "m. sphincter pupillae" RELATED LATIN [Wikipedia:Iris_sphincter_muscle]
synonym: "musculus sphincter pupillae" EXACT [BTO:0000656]
synonym: "pupillary constrictor muscle" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "pupillary sphincter" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "pupillary sphincter muscle" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "sphincter muscle of pupil" EXACT [BTO:0000656]
synonym: "sphincter pupillae" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "sphincter pupillae muscle" RELATED [Wikipedia:Iris_sphincter_muscle]
synonym: "spincter pupillae" RELATED [Wikipedia:Iris_sphincter_muscle]
xref: BTO:0000656
xref: FMA:49157
xref: http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray878.png/200px-Gray878.png
xref: MA:0001289
xref: ncithesaurus:Sphincter_Pupillae_Muscle
xref: SCTID:280889004
is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle
is_a: UBERON:0007521 ! smooth muscle sphincter
relationship: part_of UBERON:0001769
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001769 ! iris
relationship: has_muscle_antagonist UBERON:0001608 {source="dbpedia"} ! dilatator pupillae
relationship: has_muscle_insertion UBERON:0001769 {source="dbpedia", notes="encircles iris"} ! iris
relationship: has_muscle_origin UBERON:0001769 {source="dbpedia", notes="encircles iris"} ! iris
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0001608
name: dilatator pupillae
def: "The iris dilator muscle (pupil dilator muscle, pupillary dilator, radial muscle of iris, radiating fibers), is a smooth muscle of the eye, running radially in the iris and therefore fit as a dilator. It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on α1-receptors. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina. [WP,unvetted]." [Wikipedia:Iris_dilator_muscle]
subset: uberon_slim
synonym: "dilator muscle of pupil" EXACT []
synonym: "dilator of pupil" EXACT []
synonym: "dilator pupillae" EXACT []
synonym: "dilator pupillae muscle" EXACT [Wikipedia:Iris_dilator_muscle]
synonym: "dilator pupillae muscle" RELATED [BTO:0001371]
synonym: "iris dilator" RELATED [Wikipedia:Iris_dilator_muscle]
synonym: "iris dilator" RELATED []
synonym: "iris dilator muscle" EXACT [BTO:0001371]
synonym: "musculus dilatator pupillae" EXACT [FMA:49158, FMA:TA]
synonym: "musculus dilatator pupillae" RELATED LATIN [Wikipedia:Iris_dilator_muscle]
synonym: "musculus dilator pupillae" RELATED [BTO:0001371]
synonym: "pupil dilator" RELATED [Wikipedia:Iris_dilator_muscle]
synonym: "pupil dilator muscle" RELATED [Wikipedia:Iris_dilator_muscle]
synonym: "pupillary dilator" RELATED [Wikipedia:Iris_dilator_muscle]
synonym: "pupillary dilator muscle" EXACT [Wikipedia:Iris_dilator_muscle]
synonym: "pupillary muscle" RELATED [Wikipedia:Iris_dilator_muscle]
synonym: "radial muscle" RELATED [Wikipedia:Iris_dilator_muscle]
synonym: "radial muscle of iris" EXACT [Wikipedia:Iris_dilator_muscle]
synonym: "radiating fibers" RELATED [Wikipedia:Iris_dilator_muscle]
xref: BTO:0001371
xref: FMA:49158
xref: http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray878.png/200px-Gray878.png
xref: MA:0001288
xref: ncithesaurus:Dilator_Pupillae_Muscle
xref: SCTID:280890008
is_a: UBERON:0004234 {source="BTO"} ! iris smooth muscle
relationship: has_muscle_antagonist UBERON:0001607 {source="dbpedia"} ! sphincter pupillae
relationship: has_muscle_insertion UBERON:0001769 {source="dbpedia", notes="inner margins of iris"} ! iris
relationship: has_muscle_origin UBERON:0001769 {source="dbpedia", notes="outer margins of iris"} ! iris
[Term]
id: UBERON:0001609
name: isthmus of thyroid gland
def: "The thyroid isthmus connects together the lower thirds of the lobes; it measures about 1.25 cm. in breadth, and the same in depth, and usually covers the second and third rings of the trachea. Its situation and size present, however, many variations. In the middle line of the neck it is covered by the skin and fascia, and close to the middle line, on either side, by the Sternothyreoideus. Across its upper border runs an anastomotic branch uniting the two superior thyroid arteries; at its lower border are the inferior thyroid veins. [WP,unvetted]." [Wikipedia:Thyroid_isthmus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "isthmus" BROAD [VHOG:0000739]
synonym: "isthmus glandulae thyroideae" EXACT []
synonym: "isthmus glandulae thyroideae" RELATED LATIN [Wikipedia:Thyroid_isthmus]
synonym: "thyroid gland isthmus" EXACT []
synonym: "thyroid isthmus" EXACT []
xref: EHDAA2:0002031
xref: EHDAA:5777
xref: EMAPA:18195
xref: EMAPA:18829
xref: FMA:49178
xref: http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9e/Gray1174.png/200px-Gray1174.png
xref: MA:0000727
xref: ncithesaurus:Thyroid_Gland_Isthmus
xref: SCTID:245539003
xref: VHOG:0000739
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
disjoint_from: UBERON:0003052 ! midbrain-hindbrain boundary
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0001610
name: lingual artery
def: "The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]." [Wikipedia:Lingual_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria lingualis" RELATED LATIN [Wikipedia:Lingual_artery]
synonym: "lingual branch of external carotid artery" EXACT []
xref: AAO:0010492
xref: FMA:49526
xref: http://upload.wikimedia.org/wikipedia/commons/3/3c/Lingual_artery.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Lingual_artery.PNG/200px-Lingual_artery.PNG
xref: MA:0001992
xref: ncithesaurus:Lingual_Artery
xref: OpenCyc:Mx4rvfqDCZwpEbGdrcN5Y29ycA
xref: SCTID:181327002
property_value: UBPROP:0000001 "Part of the external carotid which supplies blood to the tongue.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of external carotid (AAO:0010218)[AAO]" xsd:string
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001611
name: sublingual artery
def: "The Sublingual Artery arises at the anterior margin of the Hyoglossus, and runs forward between the Genioglossus and Mylohyoideus to the sublingual gland. It supplies the gland and gives branches to the Mylohyoideus and neighboring muscles, and to the mucous membrane of the mouth and gums. One branch runs behind the alveolar process of the mandible in the substance of the gum to anastomose with a similar artery from the other side; another pierces the Mylohyoideus and anastomoses with the submental branch of the external maxillary artery. [WP,unvetted]." [Wikipedia:Sublingual_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria sublingualis" RELATED LATIN [Wikipedia:Sublingual_artery]
synonym: "sublingual branch of lingual artery" EXACT []
xref: AAO:0010491
xref: FMA:49543
xref: http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7a/Gray559.png/200px-Gray559.png
xref: MA:0002049
xref: ncithesaurus:Sublingual_Artery
xref: SCTID:368706006
property_value: UBPROP:0000001 "Part of the external carotid which supplies blood to the tip of the snout where branches go to the tongue and the m. geniohyoideus.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of external carotid (AAO:0010218)[AAO]" xsd:string
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001612
name: facial artery
def: "The facial artery (external maxillary artery in older texts) is a branch of the external carotid artery that supplies structures of the face. [WP,unvetted]." [Wikipedia:Facial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria maxillaris externa" RELATED LATIN [Wikipedia:Facial_artery]
synonym: "external maxillary artery" RELATED []
xref: EMAPA:19213
xref: FMA:49549
xref: http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png
xref: MA:0001950
xref: ncithesaurus:Facial_Artery
xref: OpenCyc:Mx4rwCt95ZwpEbGdrcN5Y29ycA
xref: SCTID:181328007
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: branch_of UBERON:0001070 ! external carotid artery
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001613
name: occipital artery
def: "The occipital artery arises opposite the facial artery, its path is below the posterior belly of digastric to the occipital region. This artery supplies blood to the back of the scalp and sterno-mastoid muscles. Other muscles it supplies are deep muscles in the back and neck. [WP,unvetted]." [Wikipedia:Occipital_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria occipitalis" RELATED LATIN [Wikipedia:Occipital_artery]
xref: FMA:49586
xref: http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png
xref: MA:0002009
xref: ncithesaurus:Occipital_Artery
xref: OpenCyc:Mx4rwC1IFJwpEbGdrcN5Y29ycA
xref: SCTID:244219005
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001614
name: superficial temporal artery
def: "In human anatomy, the superficial temporal artery is a major artery of the head. It arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]." [Wikipedia:Superficial_temporal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria temporalis superficialis" RELATED LATIN [Wikipedia:Superficial_temporal_artery]
xref: BTO:0003747
xref: FMA:49650
xref: http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray1200.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray1200.png/200px-Gray1200.png
xref: MA:0002062
xref: OpenCyc:Mx4rv33WkZwpEbGdrcN5Y29ycA
xref: SCTID:181325005
is_a: UBERON:0001632 ! temporal artery
[Term]
id: UBERON:0001615
name: transverse facial artery
def: "The transverse facial artery is an artery that branches from the superficial temporal artery and runs across the face. [WP,unvetted]." [Wikipedia:Transverse_facial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria transversa faciei" RELATED LATIN [Wikipedia:Transverse_facial_artery]
xref: FMA:49657
xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Gray515.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray515.png/200px-Gray515.png
xref: MA:0002068
xref: ncithesaurus:Transverse_Facial_Artery
xref: SCTID:146551008
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001616
name: maxillary artery
def: "The maxillary artery (or internal maxillary artery in older texts) is an artery that supplies deep structures of the face. It comes just out behind the neck of the mandible. [WP,unvetted]." [Wikipedia:Maxillary_artery]
comment: Development notes: ...1st pair undergoes partial regression, the remnants of which becomes part of the maxillary arteries [http://download.videohelp.com/vitualis/med/Vascular_Devt.html]
subset: uberon_slim
synonym: "arteria maxillaris" RELATED LATIN [Wikipedia:Maxillary_artery]
synonym: "internal maxillary artery" RELATED []
xref: EHDAA2:0001069
xref: EHDAA:7357
xref: EMAPA:17311
xref: FMA:49675
xref: GAID:498
xref: http://upload.wikimedia.org/wikipedia/commons/3/39/Gray510.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/39/Gray510.png/200px-Gray510.png
xref: MA:0001919
xref: MESH:A.07.231.114.523
xref: ncithesaurus:Maxillary_Artery
xref: OpenCyc:Mx4rwDDJ45wpEbGdrcN5Y29ycA
xref: SCTID:181326006
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001637 ! artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: directly_develops_from UBERON:0003118
intersection_of: UBERON:0001637 ! artery
intersection_of: directly_develops_from UBERON:0003118 ! aortic arch 1
relationship: directly_develops_from UBERON:0003118 ! aortic arch 1
[Term]
id: UBERON:0001617
name: mental artery
def: "The inferior alveolar artery (inferior dental artery) is an artery of the face. [WP,unvetted]." [Wikipedia:Mental_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mental branch of inferior alveolar artery" EXACT []
synonym: "ramus mentalis (arteria alveolaris inferior)" EXACT [FMA:49701, FMA:TA]
xref: FMA:49701
xref: MA:0002002
xref: ncithesaurus:Mental_Artery
xref: SCTID:147561008
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001618
name: buccal artery
def: "The buccal artery (buccinator artery) is small and runs obliquely forward, between the Pterygoideus internus and the insertion of the Temporalis, to the outer surface of the Buccinator, to which it is distributed, anastomosing with branches of the external maxillary and with the infraorbital. [WP,unvetted]." [Wikipedia:Buccal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria buccalis, arteria buccinatoria" RELATED LATIN [Wikipedia:Buccal_artery]
xref: FMA:49754
xref: http://upload.wikimedia.org/wikipedia/commons/7/7b/Gray508.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png
xref: MA:0001924
xref: ncithesaurus:Buccal_Artery
xref: SCTID:148066005
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001619
name: ophthalmic artery
def: "The ophthalmic artery is a branch of the internal carotid artery which supplies branches to supply the eye and other structures in the orbit. It enters the orbit together with the Optic nerve through the Optic canal. [WP,unvetted]." [Wikipedia:Ophthalmic_artery]
subset: uberon_slim
synonym: "arteria ophthalmica" RELATED LATIN [Wikipedia:Ophthalmic_artery]
synonym: "opthalmic artery" RELATED [Wikipedia:Ophthalmic_artery]
xref: AAO:0010497
xref: EHDAA2:0001300
xref: EHDAA:7363
xref: EMAPA:17007
xref: FMA:49868
xref: GAID:503
xref: http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ce/Gray514.png/200px-Gray514.png
xref: MA:0002011
xref: MESH:A.07.231.114.622
xref: ncithesaurus:Opthalmic_Artery
xref: OpenCyc:Mx4rvcCxpJwpEbGdrcN5Y29ycA
xref: SCTID:181310005
xref: XAO:0000368
property_value: UBPROP:0000001 "Part of internal carotid which carries blood via branches to the eye, the eye muscles, and eyelids.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of internal carotid (AAO:0010219)[AAO]" xsd:string
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: branch_of UBERON:0001532 ! internal carotid artery
[Term]
id: UBERON:0001620
name: central retinal artery
def: "The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]." [Wikipedia:Central_retinal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria centralis retinae" RELATED LATIN [Wikipedia:Central_retinal_artery]
synonym: "arteria centralis retinae" RELATED [Wikipedia:Central_retinal_artery]
synonym: "central artery of retina" EXACT []
synonym: "central artery of the retina" RELATED [Wikipedia:Central_retinal_artery]
synonym: "retinal artery" EXACT []
synonym: "Zinn's artery" EXACT []
xref: FMA:49879
xref: GAID:508
xref: http://upload.wikimedia.org/wikipedia/commons/5/59/Gray514_updated.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Gray514_updated.png/200px-Gray514_updated.png
xref: MA:0002038
xref: MESH:A.07.231.114.765
xref: ncithesaurus:Retinal_Artery
xref: SCTID:277771001
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001621
name: coronary artery
def: "Systemic artery which supplies the heart.[FMA]" [FMA:FMA, Wikipedia:Coronary_circulation#Coronary_anatomy]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "coronary arterial tree" EXACT []
xref: BTO:0000290
xref: EFO:0002551
xref: EMAPA:19160
xref: EMAPA:25968
xref: EV:0100383
xref: FMA:49893
xref: galen:CoronaryArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png
xref: MA:0002453
xref: ncithesaurus:Coronary_Artery
xref: OpenCyc:Mx4rvoL56ZwpEbGdrcN5Y29ycA
xref: SCTID:181294004
xref: VHOG:0001557
is_a: UBERON:0003498 ! heart blood vessel
is_a: UBERON:0004573 ! systemic artery
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0001622
name: lacrimal artery
def: "The lacrimal artery arises close to the optic foramen, and is one of the largest branches derived from the ophthalmic artery: not infrequently it is given off before the artery enters the orbit. It accompanies the lacrimal nerve along the upper border of the Lateral Rectus, supplies the lacrimal gland. [WP,unvetted]." [Wikipedia:Lacrimal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "a. lacrimalis" RELATED LATIN [Wikipedia:Lacrimal_artery]
xref: FMA:49927
xref: http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png
xref: MA:0001988
xref: ncithesaurus:Lacrimal_Artery
xref: SCTID:369324002
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001623
name: dorsal nasal artery
def: "The dorsal nasal artery (nasal artery) is an artery of the head. It is one of the two terminal branches of the ophthalmic artery. [WP,unvetted]." [Wikipedia:Dorsal_nasal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria dorsalis nasi" RELATED LATIN [Wikipedia:Dorsal_nasal_artery]
synonym: "dorsal nasal branch of ophthalmic artery" EXACT []
synonym: "external nasal artery" EXACT []
xref: FMA:50000
xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Gray515.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray515.png/200px-Gray515.png
xref: MA:0001945
xref: ncithesaurus:Dorsal_Nasal_Artery
xref: SCTID:369333000
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001624
name: anterior cerebral artery
def: "One of a pair of arteries on the brain that supply oxygen to most medial portions of frontal lobes and superior medial parietal lobes. The 2 anterior cerebral arteries arise from the internal carotid artery and are part of the Circle of Willis." [Wikipedia:Anterior_cerebral_artery]
subset: uberon_slim
synonym: "arteria cerebri anterior" RELATED LATIN [Wikipedia:Anterior_cerebral_artery]
xref: EHDAA2:0000128
xref: EHDAA:5296
xref: EMAPA:17854
xref: EMAPA:18614
xref: FMA:50028
xref: GAID:485
xref: http://upload.wikimedia.org/wikipedia/commons/2/25/Gray517.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png
xref: MA:0001915
xref: MESH:A.07.231.114.228.100
xref: ncithesaurus:Anterior_Cerebral_Artery
xref: OpenCyc:Mx4rv8biO5wpEbGdrcN5Y29ycA
xref: SCTID:181309000
is_a: UBERON:0004449 ! cerebral artery
[Term]
id: UBERON:0001625
name: right coronary artery
def: "Coronary artery which emerges from the anterior aortic sinus, between the right auricle and the pulmonary trunk, and supplies the right side of the heart.[FMA]" [FMA:FMA, Wikipedia:Right_coronary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria coronaria dextra" RELATED LATIN [Wikipedia:Right_coronary_artery]
synonym: "right coronary arterial tree" EXACT []
xref: EHDAA2:0004505
xref: FMA:50039
xref: http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png
xref: MA:0002455
xref: ncithesaurus:Right_Coronary_Artery
xref: SCTID:362037006
is_a: UBERON:0001621 ! coronary artery
relationship: supplies UBERON:0000948 ! heart
relationship: supplies UBERON:0002349 ! myocardium
[Term]
id: UBERON:0001626
name: left coronary artery
def: "Coronary artery which emerges from the left posterior aortic sinus, between the left auricle and the pulmonary trunk, and supplies the left side of the heart.[FMA]" [FMA:FMA, Wikipedia:Left_coronary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria coronaria sinistra" RELATED LATIN [Wikipedia:Left_coronary_artery]
synonym: "left coronary arterial tree" EXACT []
xref: EHDAA2:0004504
xref: FMA:50040
xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Gray495.png/200px-Gray495.png
xref: MA:0002454
xref: ncithesaurus:Left_Coronary_Artery
xref: SCTID:362034004
is_a: UBERON:0001621 ! coronary artery
relationship: supplies UBERON:0000948 ! heart
relationship: supplies UBERON:0002349 ! myocardium
[Term]
id: UBERON:0001627
name: middle cerebral artery
def: "The middle cerebral artery (MCA) is one of the three major paired arteries that supplies blood to the cerebrum. The MCA arises from the internal carotid and continues into the lateral sulcus where it then branches and projects to many parts of the lateral cerebral cortex. It also supplies blood to the anterior temporal lobes and the insular cortices. The left and right MCAs rise from trifurcations of the internal carotid arteries and thus are connected to the anterior cerebral arteries and the posterior communicating arteries, which connect to the posterior cerebral arteries. The MCAs are not considered a part of the Circle of Willis. [WP,unvetted]." [Wikipedia:Middle_cerebral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria cerebri media" RELATED LATIN [Wikipedia:Middle_cerebral_artery]
synonym: "sylvian artery" EXACT []
xref: EHDAA2:0001179
xref: EHDAA:5298
xref: EMAPA:18239
xref: EMAPA:18615
xref: FMA:50079
xref: GAID:487
xref: http://upload.wikimedia.org/wikipedia/commons/2/25/Gray517.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png
xref: MA:0001935
xref: MESH:A.07.231.114.228.550
xref: ncithesaurus:Middle_Cerebral_Artery
xref: OpenCyc:Mx4rvh3qQ5wpEbGdrcN5Y29ycA
xref: SCTID:181312002
is_a: UBERON:0004449 ! cerebral artery
[Term]
id: UBERON:0001628
name: posterior communicating artery
def: "In human anatomy, the posterior communicating artery is one of a pair of right-sided and left-sided blood vessels in the circle of Willis. It connects the three cerebral arteries of the same side. Anteriorly, it is one portion of the terminal trifurcation of the internal carotid artery. The anterior cerebral artery and the middle cerebral artery are the other two branches of the trifurcation. Posteriorly, it communicates with the posterior cerebral artery." [Wikipedia:Posterior_communicating_artery]
comment: Taxon notes: todo - verify ZFA link: An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery
subset: uberon_slim
subset: vertebrate_core
synonym: "arteria cerebri communicans posterior" RELATED LATIN [Wikipedia:Posterior_communicating_artery]
synonym: "caudal communicating segment" EXACT [ZFA:0005001]
synonym: "PCA" RELATED []
synonym: "PCS" RELATED []
synonym: "posterior communicating segment of the basilar artery" EXACT [ZFA:0005001]
xref: EHDAA2:0004518
xref: EHDAA:3352
xref: EMAPA:18600
xref: FMA:50084
xref: http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Circle_of_Willis_en.svg/200px-Circle_of_Willis_en.svg.png
xref: MA:0002023
xref: ncithesaurus:Posterior_Communicating_Artery
xref: OpenCyc:Mx4rwDDlqpwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0001487
xref: SCTID:181314001
xref: TAO:0005001
xref: ZFA:0005001
property_value: UBPROP:0000001 "An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery. Isogai et al. 2001.[TAO]" xsd:string
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0006347 ! communicating artery
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: branch_of UBERON:0001532 ! internal carotid artery
[Term]
id: UBERON:0001629
name: carotid body
def: "The carotid body (carotid glomus or glomus caroticum) is a small cluster of chemoreceptors and supporting cells located near the fork of the carotid artery (which runs along both sides of the throat). The carotid body detects changes in the composition of arterial blood flowing through it, mainly the partial pressure of oxygen, but also of carbon dioxide. Furthermore, it is also sensitive to changes in pH and temperature. [WP,unvetted]." [Wikipedia:Carotid_body]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "glomus caroticum" RELATED LATIN [Wikipedia:Carotid_body]
xref: BTO:0000204
xref: EMAPA:19211
xref: FMA:50095
xref: GAID:813
xref: http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray1186.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray1186.png/200px-Gray1186.png
xref: MA:0002463
xref: MESH:A.08.800.550.700.120.600.150
xref: ncithesaurus:Carotid_Body
xref: SCTID:362586000
is_a: UBERON:0000062 ! organ
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: overlaps UBERON:0001070 ! external carotid artery
relationship: overlaps UBERON:0001532 ! internal carotid artery
relationship: part_of UBERON:0001530 ! common carotid artery plus branches
[Term]
id: UBERON:0001630
name: muscle organ
def: "Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior[FMA]." [GO:0007517]
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "muscle" EXACT [ZFA:0005145]
synonym: "skeletal muscle system" RELATED [BTO:0001103]
synonym: "somatic muscle" RELATED [BTO:0001103]
xref: AAO:0011066
xref: BTO:0001103
xref: EMAPA:18187
xref: EMAPA:18923
xref: EV:0100146
xref: FMA:5022
xref: GAID:131
xref: galen:Muscle
xref: MA:0000015
xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA
xref: SCTID:71616004
xref: TAO:0005145
xref: VHOG:0001245
xref: XAO:0000172
xref: ZFA:0005145
property_value: UBPROP:0000001 "Portion of tissue composed of contractile fibers.[TAO]" xsd:string
is_a: UBERON:0000062 ! organ
is_a: UBERON:0005090 ! muscle structure
relationship: has_part UBERON:0002385
intersection_of: UBERON:0000062 ! organ
intersection_of: has_part UBERON:0002385 ! muscle tissue
relationship: has_part UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0000383 ! musculature of body
[Term]
id: UBERON:0001631
name: thoracic duct
def: "Lymphatic trunk that connects all tributaries of the thoracic duct tree to the trunk of the left brachiocephalic vein[FMA]." [FMA:5031, Wikipedia:Thoracic_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "ductus thoracicus" RELATED LATIN [Wikipedia:Thoracic_duct]
synonym: "trunk of thoracic duct tree" EXACT []
xref: EHDAA2:0004501
xref: EMAPA:19310
xref: FMA:5031
xref: GAID:1290
xref: http://upload.wikimedia.org/wikipedia/commons/7/75/Gray599.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Gray599.png/200px-Gray599.png
xref: MA:0002801
xref: MESH:A.15.382.520.869
xref: ncithesaurus:Thoracic_Duct
xref: SCTID:362600004
xref: TAO:0005110
xref: ZFA:0005110
is_a: UBERON:0001473 ! lymphatic vessel
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0002065 ! postcardinal vein
[Term]
id: UBERON:0001632
name: temporal artery
def: "In human anatomy, the superficial temporal artery is a major artery of the head. It arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]." [Wikipedia:Temporal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0010495
xref: FMA:50438
xref: GAID:489
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray1200.png/200px-Gray1200.png
xref: MA:0002061
xref: MESH:A.07.231.114.228.868
xref: ncithesaurus:Temporal_Artery
property_value: UBPROP:0000001 "Part of lateral pretrosal artery which supplies blood to the eyelids.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of lateral pretrosal artery (AAO:0010494)[AAO]" xsd:string
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001633
name: basilar artery
def: "In human anatomy, the basilar artery is one of the arteries that supplies the brain with oxygen-rich blood. The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted]." [Wikipedia:Basilar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: unverified_taxonomic_grouping
subset: vertebrate_core
synonym: "BA" RELATED []
xref: EHDAA2:0000163
xref: EHDAA:5285
xref: EMAPA:17307
xref: FMA:50542
xref: GAID:474
xref: http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Circle_of_Willis_en.svg/200px-Circle_of_Willis_en.svg.png
xref: MA:0001920
xref: MESH:A.07.231.114.106
xref: ncithesaurus:Basilar_Artery
xref: OpenCyc:Mx4rwJTtcZwpEbGdrcN5Y29ycA
xref: SCTID:244215004
xref: TAO:0005002
xref: VHOG:0000237
xref: ZFA:0005002
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0004573 ! systemic artery
relationship: branch_of UBERON:0001535 ! vertebral artery
relationship: develops_from UBERON:0001535 {source="EHDAA2"} ! vertebral artery
relationship: part_of UBERON:0001533 ! subclavian artery
relationship: part_of UBERON:0002200 ! vasculature of head
[Term]
id: UBERON:0001634
name: mesencephalic artery
def: "Develops from the proximal portion of the primitive mesencephalic artery. Isogai et al.2001." [ZFIN:curator]
comment: Editor notes: review this term, check taxon scope
synonym: "MsA" RELATED []
xref: FMA:50570
xref: TAO:0001068
xref: XAO:0004173
xref: ZFA:0001068
property_value: UBPROP:0000001 "Develops from the proximal portion of the primitive mesencephalic artery. Isogai et al. 2001.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from primitive mesencephalic artery (TAO:0001062)[TAO]" xsd:string
is_a: UBERON:0001637 ! artery
relationship: supplies UBERON:0001891 ! midbrain
[Term]
id: UBERON:0001635
name: superior cerebellar artery
def: "The superior cerebellar artery (SCA) arises near the termination of the basilar artery. It passes lateralward, immediately below the oculomotor nerve, which separates it from the posterior cerebral artery, winds around the cerebral peduncle, close to the trochlear nerve, and, arriving at the upper surface of the cerebellum, divides into branches which ramify in the pia mater and anastomose with those of the inferior cerebellar arteries. Several branches are given to the pineal body, the anterior medullary velum, and the tela chorioidea of the third ventricle. [WP,unvetted]." [Wikipedia:Superior_cerebellar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria superior cerebelli" RELATED LATIN [Wikipedia:Superior_cerebellar_artery]
xref: EHDAA2:0000681
xref: EMAPA:19309
xref: FMA:50573
xref: http://upload.wikimedia.org/wikipedia/commons/e/e1/CerebellumArteries.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/CerebellumArteries.jpg/200px-CerebellumArteries.jpg
xref: MA:0001934
xref: ncithesaurus:Superior_Cerebellar_Artery
xref: SCTID:244214000
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0004573 ! systemic artery
relationship: part_of UBERON:0001633 ! basilar artery
relationship: supplies UBERON:0001895 ! metencephalon
relationship: supplies UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0001636
name: posterior cerebral artery
def: "The posterior cerebral artery (PCA) is one of a pair of blood vessels that supplies oxygenated blood to the posterior aspect of the brain in human anatomy]. It arises near the intersection of the posterior communicating artery and the basilar artery and connects with the ipsilateral middle cerebral artery (MCA) and internal carotid artery via the posterior communicating artery (PCommA). [WP,unvetted]." [Wikipedia:Posterior_cerebral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria cerebri posterior" RELATED LATIN [Wikipedia:Posterior_cerebral_artery]
xref: EHDAA2:0000659
xref: EMAPA:17861
xref: EMAPA:18616
xref: FMA:50583
xref: GAID:488
xref: http://upload.wikimedia.org/wikipedia/commons/2/25/Gray517.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png
xref: MA:0002022
xref: MESH:A.07.231.114.228.700
xref: ncithesaurus:Posterior_Cerebral_Artery
xref: OpenCyc:Mx4rwO4qIJwpEbGdrcN5Y29ycA
xref: SCTID:181313007
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0004449 ! cerebral artery
relationship: part_of UBERON:0001633 ! basilar artery
[Term]
id: UBERON:0001637
name: artery
def: "An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]." [AEO:JB]
comment: Editor notes: Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube; FMA includes a separate class for what it calls the trunk. Classification in this ontology may currently (Jan 2012) represent a mix of both schemes, although we are gradually revising in the direction of the AEO scheme.
subset: uberon_slim
subset: vertebrate_core
synonym: "arterial subtree" EXACT []
synonym: "arterial system" RELATED []
synonym: "arterial tree organ part" EXACT []
synonym: "arterial vessel" RELATED []
xref: AAO:0010211
xref: AEO:0000208
xref: BTO:0000573
xref: EFO:0000814
xref: EHDAA2:0000143
xref: EHDAA2:0003253
xref: EV:0100026
xref: FMA:50720
xref: GAID:468
xref: galen:Artery
xref: MA:0000064
xref: MAT:0000034
xref: MESH:A.07.231.114
xref: MIAA:0000034
xref: ncithesaurus:Artery
xref: OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA
xref: SCTID:362877004
xref: TAO:0000005
xref: VHOG:0001251
xref: XAO:0000114
xref: ZFA:0000005
property_value: UBPROP:0000001 "Part of the circulatory system composed of blood vessels which carry oxygenated blood away from the heart to the rest of the body.[AAO]" xsd:string
is_a: UBERON:0003509 ! arterial blood vessel
relationship: part_of UBERON:0004572 ! arterial system
[Term]
id: UBERON:0001638
name: vein
def: "Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [Wikipedia:Vein]
comment: TODO - check with MA - vein vs venous blood vessel
subset: uberon_slim
subset: vertebrate_core
synonym: "vena" RELATED LATIN [Wikipedia:Vein]
synonym: "venous subtree" BROAD []
synonym: "venous tree organ part" EXACT []
synonym: "venous vessel" BROAD []
xref: AAO:0010212
xref: AEO:0000209
xref: BTO:0000234
xref: EFO:0000816
xref: EHDAA2:0003254
xref: EV:0100031
xref: FMA:50723
xref: GAID:492
xref: galen:Vein
xref: http://upload.wikimedia.org/wikipedia/commons/c/c2/Venous_system_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c2/Venous_system_en.svg/200px-Venous_system_en.svg.png
xref: MA:0000067
xref: MAT:0000037
xref: MESH:A.07.231.908
xref: MIAA:0000037
xref: ncithesaurus:Vein
xref: OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA
xref: SCTID:181367001
xref: TAO:0000082
xref: VHOG:0001252
xref: VHOG:0001743
xref: XAO:0000115
xref: ZFA:0000082
property_value: UBPROP:0000001 "Part of the circulatory system composed of blood vessels which carry blood from other organs, tissues, and cells to the heart.[AAO]" xsd:string
is_a: UBERON:0003920 ! venous blood vessel
[Term]
id: UBERON:0001639
name: hepatic portal vein
def: "A portal vein that transports nutrients from the digestive tract to the liver[Kardong]. A vein in the abdominal cavity that drains blood from the gastrointestinal tract and spleen. It is usually formed by the confluence of the superior mesenteric and splenic veins, and also receives blood from the inferior mesenteric, gastric, and cystic veins. The hepatic portal vein is a major component of the hepatic portal system, one of the main portal venous systems in the body. Conditions involving the hepatic portal vein cause considerable illness and death. An important example of such a condition is elevated blood pressure in the hepatic portal vein. This condition, called portal hypertension, is a major complication of cirrhosis worldwide. [WP,unvetted]." [http://sourceforge.net/tracker/?func=detail&aid=3091300&group_id=76834&atid=1205376, ISBN10:0073040584, Wikipedia:Hepatic_portal_vein]
subset: uberon_slim
subset: vertebrate_core
synonym: "hepatic portal tree" EXACT []
synonym: "HPV" RELATED []
synonym: "liver portal vein" EXACT [OBOL:automatic]
synonym: "portal vein" RELATED INCONSISTENT []
synonym: "portal vein of liver" EXACT [OBOL:automatic]
synonym: "primary hepatic portal vein" RELATED [ZFA:0005090]
synonym: "primary hepatic portal veins" RELATED []
synonym: "vena portae hepatis" RELATED LATIN [Wikipedia:Hepatic_portal_vein]
xref: AAO:0010214
xref: FMA:50735
xref: http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png
xref: MA:0002132
xref: TAO:0005090
xref: VHOG:0000642
xref: ZFA:0005090
is_a: UBERON:0002017 {source="MA"} ! portal vein
relationship: develops_from UBERON:0005487 {source="Wikipedia:Vitelline_vein"} ! vitelline vein
relationship: overlaps UBERON:0002107 ! liver
relationship: part_of UBERON:0010194 ! hepatic portal system
[Term]
id: UBERON:0001640
name: celiac artery
def: "The celiac artery, also known as the celiac trunk, is the first major branch of the abdominal aorta. Branching from the aorta 'anterior to the upper part of T12' vertebra in humans, it is one of three anterior/ midline branches of the abdominal aorta." [Wikipedia:Celiac_artery]
subset: uberon_slim
synonym: "celiac tree" EXACT []
synonym: "coeliac artery" EXACT [Wikipedia:Celiac_artery]
synonym: "coeliac axis" RELATED [Wikipedia:Celiac_artery]
synonym: "coeliac trunck" RELATED [Wikipedia:Celiac_artery]
synonym: "coeliac trunk" RELATED [Wikipedia:Celiac_artery]
synonym: "truncus coeliacus" RELATED [Wikipedia:Celiac_artery]
synonym: "truncus cÅliacus, arteria cÅliaca" RELATED LATIN [Wikipedia:Celiac_artery]
xref: EHDAA2:0004519
xref: FMA:50737
xref: GAID:483
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray532.png/200px-Gray532.png
xref: MA:0001931
xref: MESH:A.07.231.114.207
xref: ncithesaurus:Coeliac_Artery
xref: SCTID:181340007
is_a: UBERON:0004573 {source="FMA"} ! systemic artery
relationship: develops_from UBERON:0006002 {source="Wikipedia"} ! vitelline artery
[Term]
id: UBERON:0001641
name: transverse sinus
def: "The transverse sinuses (left and right lateral sinuses), within a human head, are two areas beneath the brain, which allow blood veins to span the area, from the back of the head towards the nose. They drain from the straight sinus and superior sagittal sinus (along the top and back of the brain) to the sigmoid sinuses (at the center of the head), at the internal jugular vein. See diagram (at right): labeled under the brain as '' . The transverse sinuses are of large size and begin at the internal occipital protuberance; one, generally the right, being the direct continuation of the superior sagittal sinus, the other of the straight sinus. Each transverse sinus passes lateralward and forward, describing a slight curve with its convexity upward, to the base of the petrous portion of the temporal bone, and lies, in this part of its course, in the attached margin of the tentorium cerebelli; it then leaves the tentorium and curves downward and medialward to reach the jugular foramen, where it ends in the internal jugular vein. In its course it rests upon the squama of the occipital, the mastoid angle of the parietal, the mastoid part of the temporal, and, just before its termination, the jugular process of the occipital; the portion which occupies the groove on the mastoid part of the temporal is sometimes termed the sigmoid sinus. The transverse sinuses are frequently of unequal size, with the one formed by the superior sagittal sinus being the larger; they increase in size as they proceed, from back to center. On transverse section, the horizontal portion exhibits a prismatic form, the curved portion has a semicylindrical form. They receive the blood from the superior petrosal sinuses at the base of the petrous portion of the temporal bone; they communicate with the veins of the pericranium by means of the mastoid and condyloid emissary veins; and they receive some of the inferior cerebral and inferior cerebellar veins, and some veins from the diploë. The petrosquamous sinus, when present, runs backward along the junction of the squama and petrous portion of the temporal, and opens into the transverse sinus. [WP,unvetted]." [Wikipedia:Transverse_sinuses]
comment: todo - check su
subset: uberon_slim
synonym: "groove for right and left transverse sinuses" RELATED [Wikipedia:Transverse_sinuses]
synonym: "sinus transversus" RELATED [Wikipedia:Transverse_sinuses]
synonym: "sinus transversus durae matris" EXACT LATIN [Wikipedia:Transverse_sinuses]
synonym: "transverse sinus" RELATED [Wikipedia:Transverse_sinuses]
synonym: "transverse sinus vein" RELATED [Wikipedia:Transverse_sinuses]
xref: EMAPA:18637
xref: FMA:50763
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray488_blue.gif/200px-Gray488_blue.gif
xref: MA:0001868
xref: ncithesaurus:Transverse_Sinus
xref: OpenCyc:Mx4rwDb62ZwpEbGdrcN5Y29ycA
xref: SCTID:279262004
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0006615 {source="MA"} ! venous sinus
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0001642
name: superior sagittal sinus
def: "The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]." [Wikipedia:Superior_sagittal_sinus]
subset: uberon_slim
synonym: "sinus sagittalis superior" RELATED LATIN [Wikipedia:Superior_sagittal_sinus]
xref: FMA:50767
xref: http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray488_blue.gif/200px-Gray488_blue.gif
xref: MA:0001867
xref: ncithesaurus:Superior_Sagittal_Sinus
xref: OpenCyc:Mx4rv9naEJwpEbGdrcN5Y29ycA
xref: SCTID:362075006
is_a: UBERON:0006615 {source="MA"} ! venous sinus
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0009968 {source="cjm"} ! primitive superior sagittal sinus
[Term]
id: UBERON:0001643
name: oculomotor nerve
def: "Cranial nerve which connects the midbrain to the extra-ocular and intra-ocular muscles. // Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Oculomotor_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "CN-III" RELATED []
synonym: "cranial nerve III" RELATED []
synonym: "nervus oculomotorius" RELATED LATIN [Wikipedia:Oculomotor_nerve]
synonym: "nervus oculomotorius [iii]" EXACT [FMA:50864, FMA:TA]
synonym: "occulomotor" RELATED []
synonym: "oculomotor III" EXACT [EHDAA2:0001284]
synonym: "oculomotor III nerve" EXACT []
synonym: "Oculomotor nerve [III]" EXACT []
synonym: "oculomotor nerve tree" EXACT []
synonym: "third cranial nerve" EXACT []
xref: AAO:0010468
xref: BM:MB-IIIN
xref: EHDAA2:0001284
xref: EHDAA:3736
xref: EMAPA:17574
xref: FMA:50864
xref: GAID:829
xref: http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Gray776.png/200px-Gray776.png
xref: MA:0001095
xref: MESH:A.08.800.800.120.600
xref: ncithesaurus:Oculomotor_Nerve
xref: NIF_GrossAnatomy:birnlex_1646
xref: OpenCyc:Mx4rvj7pZpwpEbGdrcN5Y29ycA
xref: SCTID:362456009
xref: TAO:0000405
xref: VHOG:0000692
xref: XAO:0003090
xref: ZFA:0000405
property_value: UBPROP:0000001 "Somatic efferent fibers which innervate four eye muscles.[AAO]" xsd:string
is_a: UBERON:0001785 ! cranial nerve
relationship: develops_from UBERON:0010285 {source="Wikipedia"} ! midbrain basal plate
relationship: develops_from_part_of UBERON:0005073 {source="GO"} ! preganglionic parasympathetic nervous system
[Term]
id: UBERON:0001644
name: trochlear nerve
def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Trochlear_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "CN-IV" RELATED []
synonym: "cranial nerve IV" RELATED []
synonym: "fourth cranial nerve" EXACT []
synonym: "nervus trochlearis" RELATED LATIN [Wikipedia:Trochlear_nerve]
synonym: "nervus trochlearis [iv]" EXACT [FMA:50865, FMA:TA]
synonym: "pathetic nerve" RELATED []
synonym: "superior oblique nerve" EXACT []
synonym: "trochlear" RELATED []
synonym: "trochlear IV nerve" EXACT []
synonym: "Trochlear nerve [IV]" EXACT []
synonym: "trochlear nerve tree" EXACT []
xref: AAO:0010469
xref: BM:IVN
xref: EHDAA2:0002090
xref: EMAPA:18218
xref: FMA:50865
xref: GAID:838
xref: http://upload.wikimedia.org/wikipedia/commons/3/33/Trochlear_nerve.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Trochlear_nerve.png/200px-Trochlear_nerve.png
xref: MA:0001105
xref: MESH:A.08.800.800.120.800
xref: ncithesaurus:Trochlear_Nerve
xref: NIF_GrossAnatomy:birnlex_1654
xref: OpenCyc:Mx4rvyeBQ5wpEbGdrcN5Y29ycA
xref: SCTID:180939009
xref: TAO:0000600
xref: VHOG:0000705
xref: XAO:0003091
xref: ZFA:0000600
property_value: UBPROP:0000001 "Somatic efferent nerve which supplies a single eye muscle, the m. obliquus superior.[AAO]" xsd:string
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0001645
name: trigeminal nerve
def: "Cranial nerve that has three branches - the ophthalmic (supplying the skin of the nose and upper jaw), the maxillary and the mandibular (supplying the lower jaw)." [ISBN:0471209627, Wikipedia:Trigeminal_nerve]
comment: Taxon notes: the ophthalmic usually usually merges with the other two. In some vertebrates, the ophthalmic emerges from the brain separately[Kardong]
subset: uberon_slim
subset: vertebrate_core
synonym: "CN-V" RELATED []
synonym: "cranial nerve V" RELATED []
synonym: "fifth cranial nerve" EXACT []
synonym: "nervus trigeminus" EXACT LATIN [Wikipedia:Trigeminal_nerve]
synonym: "nervus trigeminus" RELATED [BTO:0001072]
synonym: "nervus trigeminus [v]" EXACT [FMA:50866, FMA:TA]
synonym: "trigeminal nerve [V]" EXACT []
synonym: "trigeminal nerve tree" EXACT []
synonym: "trigeminal V" EXACT [EHDAA2:0002084]
synonym: "trigeminal v nerve" EXACT []
synonym: "trigeminus" RELATED [BTO:0001072]
xref: AAO:0010470
xref: BM:VN
xref: BTO:0001072
xref: EFO:0001402
xref: EHDAA2:0002084
xref: EHDAA:3738
xref: EMAPA:16797
xref: EMAPA:17576
xref: FMA:50866
xref: GAID:726
xref: http://upload.wikimedia.org/wikipedia/commons/9/99/Gray778_Trigeminal.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Gray778_Trigeminal.png/200px-Gray778_Trigeminal.png
xref: MA:0001100
xref: MESH:A.08.800.800.120.760
xref: ncithesaurus:Trigeminal_Nerve
xref: NIF_GrossAnatomy:birnlex_869
xref: OpenCyc:Mx4rwMF8CJwpEbGdrcN5Y29ycA
xref: SCTID:362459002
xref: TAO:0000697
xref: VHOG:0000704
xref: XAO:0003092
xref: ZFA:0000697
property_value: UBPROP:0000001 "Nerve consists of motor and sensory components. Ganglion cells of the sensory component form the proximal part of the trigeminal (Gasserian) ganglion. From the ganglion 3 major rami innervate jaws, snout, and buccal roof.[AAO]" xsd:string
is_a: UBERON:0001785 ! cranial nerve
relationship: has_developmental_contribution_from UBERON:0002342 {source="Wikipedia"} ! neural crest
relationship: has_developmental_contribution_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon
[Term]
id: UBERON:0001646
name: abducens nerve
def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Abducens_nerve]
comment: Taxon notes: Homologous abducens nerves are found in all vertebrates except lampreys and hagfishes.[WP] It controls the movement of a single muscle, the lateral rectus muscle of the eye, in humans. In most other mammals it also innervates the musculus retractor bulbi, which can retract the eye for protection[WP]
subset: uberon_slim
subset: vertebrate_core
synonym: "abducens nerve [VI]" EXACT []
synonym: "abducens nerve tree" EXACT []
synonym: "abducens VI nerve" EXACT []
synonym: "abducent nerve" RELATED []
synonym: "abducent nerve [VI]" EXACT []
synonym: "CN-VI" RELATED []
synonym: "cranial nerve VI" RELATED []
synonym: "lateral rectus nerve" EXACT []
synonym: "nervus abducens" EXACT []
synonym: "nervus abducens" RELATED LATIN [Wikipedia:Abducens_nerve]
synonym: "nervus abducens [VI]" EXACT [FMA:50867, FMA:TA]
synonym: "sixth cranial nerve" EXACT []
xref: AAO:0010471
xref: BM:Pons-VIN
xref: EHDAA2:0000103
xref: FMA:50867
xref: GAID:824
xref: http://upload.wikimedia.org/wikipedia/commons/2/29/Abducens_nerve1.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Abducens_nerve1.png/200px-Abducens_nerve1.png
xref: MA:0001087
xref: MESH:A.08.800.800.120.030
xref: ncithesaurus:Abducens_Nerve
xref: NIF_GrossAnatomy:birnlex_876
xref: OpenCyc:Mx4rvjl41ZwpEbGdrcN5Y29ycA
xref: SCTID:180941005
xref: TAO:0000310
xref: VHOG:0000697
xref: XAO:0003093
xref: ZFA:0000310
property_value: UBPROP:0000001 "Somatic motor nerve which bifurcates innervating m. rectus lateralis and m. retractor bulbi (eye muscles).[AAO]" xsd:string
is_a: UBERON:0001785 ! cranial nerve
relationship: develops_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon
[Term]
id: UBERON:0001647
name: facial nerve
def: "Cranial nerve that branches into the supraorbital (supplying the skin of the eye region and the lateral line organs here), the palatine (to the roof of the buccal cavity), and the hyomandibular (dividing into the jugular and mental branches)." [ISBN:0471209627, Wikipedia:Facial_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "branchiomeric cranial nerve" EXACT []
synonym: "CN-VII" RELATED []
synonym: "cranial nerve VII" RELATED []
synonym: "face nerve" EXACT [OBOL:automatic]
synonym: "Facial nerve [VII]" EXACT []
synonym: "facial nerve tree" EXACT []
synonym: "facial VII" EXACT [EHDAA2:0000489]
synonym: "facial VII nerve" EXACT []
synonym: "nerve of face" EXACT [OBOL:automatic]
synonym: "nervus facialis" EXACT [ZFA:0000664]
synonym: "nervus facialis" RELATED LATIN [Wikipedia:Facial_nerve]
synonym: "nervus facialis [vii]" EXACT [FMA:50868, FMA:TA]
synonym: "seventh cranial nerve" EXACT []
xref: AAO:0010472
xref: BM:Pons-VIIN
xref: EHDAA2:0000489
xref: EHDAA:3729
xref: EMAPA:17569
xref: EMAPA:17796
xref: FMA:50868
xref: GAID:719
xref: http://upload.wikimedia.org/wikipedia/commons/1/1f/Cranial_nerve_VII.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Cranial_nerve_VII.svg/200px-Cranial_nerve_VII.svg.png
xref: MA:0001091
xref: MESH:A.08.800.800.120.250
xref: ncithesaurus:Facial_Nerve
xref: NIF_GrossAnatomy:birnlex_827
xref: OpenCyc:Mx4rvthgEpwpEbGdrcN5Y29ycA
xref: SCTID:362460007
xref: TAO:0000664
xref: VHOG:0000706
xref: XAO:0003094
xref: ZFA:0000664
property_value: UBPROP:0000001 "Slender nerve composed of branchiomotor and visceral efferent fibers innervating the mouth and various muscles within the jaw. Sensory components innervate the bucccal roof and somatomotor components innervate the depressor musculature and muscle interhyoideus.[AAO]" xsd:string
is_a: UBERON:0001785 ! cranial nerve
relationship: part_of UBERON:0001456
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001456 ! face
relationship: develops_from_part_of UBERON:0005073 {source="GO"} ! preganglionic parasympathetic nervous system
relationship: has_developmental_contribution_from UBERON:0002342 {source="Wikipedia"} ! neural crest
relationship: has_developmental_contribution_from UBERON:0003066 {source="Wikipedia"} ! pharyngeal arch 2
relationship: has_developmental_contribution_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon
relationship: part_of UBERON:0001033 ! gustatory system
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001648
name: vestibulocochlear nerve
def: "Cranial nerve that runs to the ear." [ISBN:0471209627, Wikipedia:Vestibulocochlear_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "acoustic nerve" EXACT []
synonym: "acoustic nerve (crosby)" EXACT []
synonym: "CN-VIII" EXACT []
synonym: "cochlear-vestibular nerve" EXACT []
synonym: "cochleovestibular nerve" EXACT []
synonym: "cranial nerve VIII" EXACT []
synonym: "eighth cranial nerve" EXACT []
synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490]
synonym: "nervus vestibulocochlearis [viii]" EXACT [FMA:50869, FMA:TA]
synonym: "octaval nerve" RELATED []
synonym: "stato-acoustic nerve" EXACT []
synonym: "statoacoustic nerve" RELATED []
synonym: "Vestibulocochlear nerve [VIII]" EXACT []
synonym: "vestibulocochlear nerve tree" EXACT []
synonym: "vestibulocochlear VIII nerve" EXACT []
synonym: "VIIIth cranial nerve" EXACT []
xref: AAO:0010473
xref: BTO:0003490
xref: EHDAA2:0002194
xref: EMAPA:17801
xref: FMA:50869
xref: GAID:839
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray789.png/200px-Gray789.png
xref: MA:0001109
xref: MESH:A.08.800.800.120.910
xref: ncithesaurus:Vestibulocochlear_Nerve
xref: NIF_GrossAnatomy:birnlex_890
xref: OpenCyc:Mx4rvVjMFZwpEbGdrcN5Y29ycA
xref: SCTID:180945001
xref: TAO:0000247
xref: VHOG:0000695
xref: XAO:0003095
xref: ZFA:0000247
property_value: UBPROP:0000001 "Nerve primarily composed of special somatic afferent fibers innervating the inner ear, and is involved in balance, position, and hearing.[AAO]" xsd:string
is_a: UBERON:0001785 ! cranial nerve
relationship: continuous_with UBERON:0001844 ! cochlea
relationship: develops_from UBERON:0003069 {source="Wikipedia"} ! otic placode
[Term]
id: UBERON:0001649
name: glossopharyngeal nerve
def: "Cranial nerve that branches into the ramus communicans (to the skin), the pretrematic (to the walls of the pharynx and mouth, viscero-sensory fibers), and the larval post-trematic branch (lost in the adult)." [ISBN:0471209627, Wikipedia:Glossopharyngeal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "CN-IX" RELATED []
synonym: "cranial nerve IX" RELATED []
synonym: "glossopharyngeal IX" EXACT [EHDAA2:0000709]
synonym: "glossopharyngeal IX nerve" EXACT []
synonym: "Glossopharyngeal nerve [IX]" EXACT []
synonym: "glossopharyngeal nerve tree" EXACT []
synonym: "nervus glossopharyngeus" EXACT [ZFA:0000668]
synonym: "nervus glossopharyngeus" RELATED LATIN [Wikipedia:Glossopharyngeal_nerve]
synonym: "nervus glossopharyngeus [ix]" EXACT [FMA:50870, FMA:TA]
synonym: "ninth cranial nerve" EXACT []
xref: AAO:0010474
xref: BTO:0004979
xref: EHDAA2:0000709
xref: EHDAA:3733
xref: EMAPA:16795
xref: EMAPA:17268
xref: FMA:50870
xref: GAID:827
xref: http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png
xref: MA:0001093
xref: MESH:A.08.800.800.120.290
xref: ncithesaurus:Glossopharyngeal_Nerve
xref: NIF_GrossAnatomy:birnlex_899
xref: OpenCyc:Mx4rwIr5X5wpEbGdrcN5Y29ycA
xref: SCTID:362465002
xref: TAO:0000668
xref: VHOG:0000701
xref: XAO:0003096
xref: ZFA:0000668
property_value: UBPROP:0000001 "Small nerve consisting of branchiomotor and visceral efferent and afferent fibers which innervate the m. subarculais rectus I, dorsal buccal mucosa, and the tongue.[AAO]" xsd:string
is_a: UBERON:0001785 {source="FMA"} ! cranial nerve
relationship: has_developmental_contribution_from UBERON:0002342 {notes="sensory", source="Wikipedia"} ! neural crest
relationship: has_developmental_contribution_from UBERON:0005239 {notes="motor", source="Wikipedia"} ! basal plate metencephalon
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0001650
name: hypoglossal nerve
def: "Nerve that innervates all the intrinsic and all but one of the extrinsic muscles of the tongue." [GO:0021566, Wikipedia:Hypoglossal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cranial nerve XII" EXACT [NIF_GrossAnatomy:birnlex_820]
synonym: "Hypoglossal nerve [XII]" EXACT []
synonym: "hypoglossal nerve tree" EXACT []
synonym: "hypoglossal XII" EXACT [EHDAA2:0000798]
synonym: "hypoglossal XII nerve" EXACT []
synonym: "nervus hypoglossus" RELATED LATIN [Wikipedia:Hypoglossal_nerve]
synonym: "nervus hypoglossus [xii]" EXACT [FMA:50871, FMA:TA]
synonym: "twelfth cranial nerve" EXACT []
xref: AAO:0010477
xref: BTO:0003386
xref: EHDAA2:0000798
xref: EHDAA:2859
xref: EMAPA:17269
xref: FMA:50871
xref: GAID:828
xref: http://upload.wikimedia.org/wikipedia/commons/e/ef/Gray794.png
xref: MA:0001094
xref: MESH:A.08.800.800.120.330
xref: ncithesaurus:Hypoglossal_Nerve
xref: NIF_GrossAnatomy:birnlex_820
xref: OpenCyc:Mx4rv9eWA5wpEbGdrcN5Y29ycA
xref: SCTID:362471008
xref: VHOG:0000693
xref: XAO:0004215
property_value: UBPROP:0000001 "Nerve which innervates the muscles associated with the tongue including mm geniohyoideus, genioglossus, hyoglossus and rectus cervicis.[AAO]" xsd:string
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0001651
name: right pulmonary artery
def: "The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]." [Wikipedia:Right_pulmonary_artery]
comment: TODO - add class 'pulmonary artery tree organ'
subset: uberon_slim
synonym: "arteria pulmonalis dextra" RELATED LATIN [Wikipedia:Right_pulmonary_artery]
synonym: "right main pulmonary artery" EXACT []
synonym: "right pulmonary arterial tree" EXACT []
xref: FMA:50872
xref: galen:RightPulmonaryArtery
xref: http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0002500
xref: ncithesaurus:Right_Pulmonary_Artery
xref: SCTID:244235003
is_a: UBERON:0002012 ! pulmonary artery
[Term]
id: UBERON:0001652
name: left pulmonary artery
def: "The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]." [Wikipedia:Left_pulmonary_artery]
comment: TODO - add class 'pulmonary artery tree organ'
subset: uberon_slim
synonym: "arteria pulmonalis sinistra" RELATED LATIN [Wikipedia:Left_pulmonary_artery]
synonym: "left main pulmonary artery" EXACT []
synonym: "left pulmonary arterial tree" EXACT []
xref: FMA:50873
xref: galen:LeftPulmonaryArtery
xref: http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0002032
xref: ncithesaurus:Left_Pulmonary_Artery
xref: SCTID:244234004
is_a: UBERON:0002012 ! pulmonary artery
[Term]
id: UBERON:0001653
name: facial vein
def: "The anterior facial vein (facial vein) commences at the side of the root of the nose, and is a direct continuation of the angular vein where it also receives a small nasal branch. It lies behind the facial artery and follows a less tortuous course. It receives blood from the external palatine vein before it either joins the anterior branch of the retromandibular vein to form the common facial vein, or drains directly into the internal jugular vein. [WP,unvetted]." [Wikipedia:Facial_vein]
comment: Comment note MA also has 'anterior facial vein'
subset: uberon_slim
synonym: "face vein" EXACT [OBOL:automatic]
synonym: "vein of face" EXACT [OBOL:automatic]
synonym: "vena facialis anterior" RELATED LATIN [Wikipedia:Facial_vein]
xref: AAO:0010513
xref: EMAPA:19220
xref: FMA:50874
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002115
xref: ncithesaurus:Facial_Vein
xref: OpenCyc:Mx4rvziz3JwpEbGdrcN5Y29ycA
xref: SCTID:181374006
property_value: UBPROP:0000001 "Vein which collects blood from muscles of the head and drains into the external jugular vein.[AAO]" xsd:string
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0009141 ! craniocervical region vein
relationship: part_of UBERON:0001456
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001654
name: supra-orbital vein
def: "The supraorbital vein begins on the forehead where it communicates with the frontal branch of the superficial temporal vein. It runs downward superficial to the Frontalis muscle, and joins the frontal vein at the medial angle of the orbit to form the angular vein. Previous to its junction with the frontal vein, it sends through the supraorbital notch into the orbit a branch which communicates with the ophthalmic vein; as this vessel passes through the notch, it receives the frontal diploic vein through a foramen at the bottom of the notch. The areas drained by this vessel are the forehead, eyebrow and upper eyelid. [WP,unvetted]." [Wikipedia:Supra-orbital_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "supraorbital vein" EXACT []
xref: FMA:50904
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002228
xref: ncithesaurus:Supra-orbital_Vein
xref: SCTID:152006005
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001653 {source="FMA/obol"} ! facial vein
[Term]
id: UBERON:0001655
name: submental vein
comment: This class was created automatically from a combination of ontologies
xref: FMA:50925
xref: MA:0002223
xref: ncithesaurus:Submental_Vein
xref: SCTID:152309009
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001653 {source="FMA/obol"} ! facial vein
[Term]
id: UBERON:0001656
name: retromandibular vein
def: "The retromandibular vein (temporomaxillary vein, posterior facial vein), formed by the union of the superficial temporal and maxillary veins, descends in the substance of the parotid gland, superficial to the external carotid artery but beneath the facial nerve, between the ramus of the mandible and the sternocleidomastoideus muscle. It divides into two branches: an anterior, which passes forward and unites with the anterior facial vein to form the common facial vein. a posterior, which is joined by the posterior auricular vein and becomes the external jugular vein. [WP,unvetted]." [Wikipedia:Retromandibular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "posterior facial vein" EXACT []
synonym: "vena retromandibularis, vena facialis posterior" RELATED LATIN [Wikipedia:Retromandibular_vein]
xref: FMA:50928
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002117
xref: ncithesaurus:Temporo-maxillary_Vein
xref: OpenCyc:Mx4rv0bn95wpEbGdrcN5Y29ycA
xref: SCTID:151299003
is_a: UBERON:0001653 ! facial vein
relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
[Term]
id: UBERON:0001657
name: superficial temporal vein
def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Superficial_temporal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "venae temporales superficiales" RELATED LATIN [Wikipedia:Superficial_temporal_vein]
xref: BTO:0003748
xref: EMAPA:19315
xref: FMA:50932
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002242
xref: ncithesaurus:Superficial_Temporal_Vein
xref: OpenCyc:Mx4rvmANWZwpEbGdrcN5Y29ycA
xref: SCTID:150087005
is_a: UBERON:0001671 ! temporal vein
relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
relationship: tributary_of UBERON:0001656 {source="FMA/obol"} ! retromandibular vein
[Term]
id: UBERON:0001658
name: middle temporal vein
comment: This class was created automatically from a combination of ontologies
xref: FMA:50935
xref: MA:0002241
xref: SCTID:151400007
is_a: UBERON:0001671 ! temporal vein
relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
relationship: tributary_of UBERON:0001656 {source="FMA/obol"} ! retromandibular vein
[Term]
id: UBERON:0001659
name: transverse facial vein
def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Superficial_temporal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:50938
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002247
xref: SCTID:151501009
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
relationship: tributary_of UBERON:0001656 {source="FMA/obol"} ! retromandibular vein
[Term]
id: UBERON:0001660
name: maxillary vein
def: "The maxillary veins (internal maxillary vein in older sources) consist of a short trunk which accompanies the first part of the internal maxillary artery. It is formed by a confluence of the veins of the pterygoid plexus, and passes backward between the sphenomandibular ligament and the neck of the mandible, and unites with the superficial temporal vein to form the retromandibular vein. [WP,unvetted]." [Wikipedia:Maxillary_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:50941
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002169
xref: ncithesaurus:Internal_Maxillary_Vein
xref: OpenCyc:Mx4rvlDSc5wpEbGdrcN5Y29ycA
xref: SCTID:29972009
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
relationship: tributary_of UBERON:0001656 {source="FMA/obol"} ! retromandibular vein
[Term]
id: UBERON:0001661
name: deep temporal vein
comment: This class was created automatically from a combination of ontologies
xref: FMA:50954
xref: MA:0002240
xref: ncithesaurus:Deep_Temporal_Vein
xref: SCTID:798000
is_a: UBERON:0001671 ! temporal vein
[Term]
id: UBERON:0001662
name: anterior auricular vein
def: "The anterior auricular veins are veins which drain the anterior aspect of the external ear. [WP,unvetted]." [Wikipedia:Anterior_auricular_veins]
comment: This class was created automatically from a combination of ontologies
synonym: "venae auriculares anteriores" RELATED LATIN [Wikipedia:Anterior_auricular_veins]
xref: FMA:50956
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002083
xref: ncithesaurus:Anterior_Auricular_Vein
xref: SCTID:151602009
is_a: UBERON:0006197 ! auricular vein
relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
relationship: tributary_of UBERON:0001656 {source="FMA/obol"} ! retromandibular vein
[Term]
id: UBERON:0001663
name: cerebral vein
def: "The cerebral veins are divisible into external and internal groups according to the outer surfaces or the inner parts of the hemispheres they drain into. The external veins are the superior cerebral veins, inferior cerebral veins, and middle cerebral vein. [WP,unvetted]." [Wikipedia:Cerebral_veins]
comment: This class was created automatically from a combination of ontologies
synonym: "venae encephali, venae cerebri" RELATED LATIN [Wikipedia:Cerebral_veins]
xref: FMA:50981
xref: GAID:530
xref: http://upload.wikimedia.org/wikipedia/commons/9/9f/Gray568.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9f/Gray568.png/200px-Gray568.png
xref: MA:0002096
xref: MESH:A.07.231.908.155
xref: ncithesaurus:Cerebral_Vein
xref: SCTID:244392000
xref: XAO:0004160
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001664
name: inferior cerebral vein
def: "The inferior cerebral veins, of small size, drain the under surfaces of the hemispheres. Those on the orbital surface of the frontal lobe join the superior cerebral veins, and through these open into the superior sagittal sinus. Those of the temporal lobe anastomose with the middle cerebral and basal veins, and join the cavernous, sphenoparietal, and superior petrosal sinuses. [WP,unvetted]." [Wikipedia:Inferior_cerebral_veins]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:50986
xref: http://upload.wikimedia.org/wikipedia/commons/2/25/Gray517.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png
xref: MA:0002097
xref: SCTID:244395003
is_a: UBERON:0001663 ! cerebral vein
[Term]
id: UBERON:0001665
name: triceps surae
def: "The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5–S2. [WP,unvetted]." [Wikipedia:Triceps_surae_muscle]
comment: A set of muscles in FMA, a single organ in MA
subset: uberon_slim
synonym: "calf muscle" RELATED [Wikipedia:Triceps_surae_muscle]
synonym: "gastrosoleus" RELATED [Wikipedia:Triceps_surae_muscle]
synonym: "gastrosoleus complex" RELATED [Wikipedia:Triceps_surae_muscle]
synonym: "musculus triceps surae" RELATED LATIN [Wikipedia:Triceps_surae_muscle]
synonym: "sural triceps" RELATED []
xref: FMA:51062
xref: http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg
xref: MA:0002400
xref: ncithesaurus:Triceps_Surae
is_a: UBERON:0004256 ! hindlimb zeugopod muscle
relationship: has_muscle_insertion UBERON:0001450 {source="dbpedia"} ! calcaneus
relationship: has_muscle_insertion UBERON:0003701 {source="dbpedia"} ! calcaneal tendon
relationship: has_muscle_nerve UBERON:0001323 {source="dbpedia"} ! tibial nerve
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0001666
name: flexor digitorum longus
def: "The Flexor digitorum longus is situated on the tibial side of the leg. At its origin it is thin and pointed, but it gradually increases in size as it descends. This muscle serves to curl the second, third, fourth, and fifth toes (flexion of phalanges II-V). [WP,unvetted]." [Wikipedia:Flexor_digitorum_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000466
xref: FMA:51071
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png
xref: MA:0002299
xref: ncithesaurus:Flexor_Digitorum_Longus
xref: SCTID:181703002
is_a: UBERON:0001383 ! muscle of leg
[Term]
id: UBERON:0001667
name: tibialis posterior
def: "The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]." [Wikipedia:Tibialis_posterior_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ibialis posticus" RELATED [BTO:0000867]
synonym: "musculus tibialis posterior" RELATED LATIN [Wikipedia:Tibialis_posterior_muscle]
synonym: "posterior tibialis" RELATED [BTO:0000867]
synonym: "tibialis caudalis" EXACT []
synonym: "tibialis posterior muscle" RELATED [BTO:0000867]
xref: BTO:0000867
xref: FMA:51099
xref: http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png
xref: MA:0002394
xref: ncithesaurus:Tibialis_Caudalis
xref: SCTID:361824007
is_a: UBERON:0008230 ! tibialis
relationship: has_muscle_antagonist UBERON:0001385 {source="dbpedia"} ! tibialis anterior
relationship: has_muscle_insertion UBERON:0001451 {source="dbpedia"} ! navicular bone of foot
relationship: has_muscle_insertion UBERON:0001452 {source="dbpedia"} ! distal tarsal bone 1
relationship: has_muscle_nerve UBERON:0001323 {source="dbpedia"} ! tibial nerve
relationship: has_muscle_origin UBERON:0000979 {source="dbpedia"} ! tibia
relationship: has_muscle_origin UBERON:0001446 {source="dbpedia"} ! fibula
[Term]
id: UBERON:0001668
name: cerebellar vein
def: "Cerebellar veins are veins which drain the cerebellum. More specifically, they are: Superior cerebellar veins Inferior cerebellar veins [WP,unvetted]." [Wikipedia:Cerebellar_veins]
comment: This class was created automatically from a combination of ontologies
synonym: "cerebellum vein" EXACT [OBOL:automatic]
synonym: "epencephalon-1 vein" EXACT [OBOL:automatic]
synonym: "vein of cerebellum" EXACT [OBOL:automatic]
synonym: "vein of epencephalon-1" EXACT [OBOL:automatic]
xref: FMA:51227
xref: MA:0002093
xref: ncithesaurus:Cerebellar_Vein
xref: SCTID:40693009
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003499 ! brain blood vessel
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002037
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0001669
name: superior cerebellar vein
def: "The superior cerebellar veins pass partly forward and medialward, across the superior vermis, to end in the straight sinus and the internal cerebral veins, partly lateralward to the transverse and superior petrosal sinuses. [WP,unvetted]." [Wikipedia:Superior_cerebellar_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vein of superior cerebellar hemisphere" EXACT []
xref: FMA:51232
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray704.png/200px-Gray704.png
xref: MA:0002095
xref: SCTID:64307009
is_a: UBERON:0001668 ! cerebellar vein
[Term]
id: UBERON:0001670
name: inferior cerebellar vein
def: "The inferior cerebellar veins are of large size, end in the transverse, superior petrosal, and occipital sinuses. [WP,unvetted]." [Wikipedia:Inferior_cerebellar_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "inferior vein of cerebellar hemisphere" EXACT []
xref: FMA:51233
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray704.png/200px-Gray704.png
xref: MA:0002094
xref: SCTID:69104006
is_a: UBERON:0001668 ! cerebellar vein
[Term]
id: UBERON:0001671
name: temporal vein
def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Superficial_temporal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:51302
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002239
xref: ncithesaurus:Temporal_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001672
name: anterior cerebral vein
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "ACeV" RELATED []
synonym: "rostral cerebral vein" RELATED []
xref: FMA:51306
xref: SCTID:55155007
xref: TAO:0001067
xref: XAO:0004158
xref: ZFA:0001067
is_a: UBERON:0001663 ! cerebral vein
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0009141 ! craniocervical region vein
relationship: part_of UBERON:0002200 ! vasculature of head
[Term]
id: UBERON:0001673
name: central retinal vein
def: "The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]." [Wikipedia:Central_retinal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "retinal vein" EXACT []
synonym: "vena centralis retinae" RELATED LATIN [Wikipedia:Central_retinal_vein]
xref: FMA:51799
xref: GAID:524
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray572.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray572.png/200px-Gray572.png
xref: MA:0002213
xref: MESH:A.07.231.611.773
xref: ncithesaurus:Retinal_Vein
xref: SCTID:280913005
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus
relationship: tributary_of UBERON:0005486 {source="FMA/obol"} ! venous dural sinus
[Term]
id: UBERON:0001674
name: masseteric vein
comment: This class was created automatically from a combination of ontologies
xref: FMA:52519
xref: MA:0002167
xref: ncithesaurus:Masseteric_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001675
name: trigeminal ganglion
def: "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995." [Wikipedia:Trigeminal_ganglion, ZFIN:curator]
subset: uberon_slim
subset: vertebrate_core
synonym: "5th ganglion" EXACT [ZFA:0000295]
synonym: "fifth ganglion" EXACT [ZFA:0000295]
synonym: "ganglion of trigeminal nerve" RELATED [BTO:0001231]
synonym: "ganglion trigeminale" RELATED [BTO:0001231]
synonym: "ganglion trigeminale, ganglion semilunare" RELATED LATIN [Wikipedia:Trigeminal_ganglion]
synonym: "Gasser's ganglion" RELATED [BTO:0001231]
synonym: "gasserian ganglia" RELATED PLURAL [Wikipedia:Trigeminal_ganglion]
synonym: "gasserian ganglion" EXACT [Wikipedia:Trigeminal_ganglion]
synonym: "gV" RELATED []
synonym: "semilunar ganglion" EXACT []
synonym: "trigeminal ganglia" RELATED PLURAL []
synonym: "trigeminal V ganglion" EXACT [MA:0001080]
synonym: "trigeminus ganglion" RELATED []
xref: AAO:0011107
xref: BTO:0001231
xref: EFO:0000903
xref: EHDAA2:0002085
xref: EHDAA:2113
xref: EMAPA:16797
xref: FMA:52618
xref: GAID:725
xref: http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Gray776.png/200px-Gray776.png
xref: MA:0001080
xref: MAT:0000511
xref: MESH:A.08.340.390.850
xref: ncithesaurus:Trigeminal_Ganglion
xref: SCTID:244449009
xref: TAO:0000295
xref: VHOG:0000694
xref: XAO:0000427
xref: XAO:0000428
xref: ZFA:0000295
property_value: UBPROP:0000001 "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0001714 ! cranial ganglion
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0003070 ! trigeminal placode
relationship: develops_from UBERON:0005563 ! trigeminal neural crest
[Term]
id: UBERON:0001676
name: occipital bone
def: "A saucer-shaped membrane bone situated at the back and lower part of the cranium, is trapezoid in shape and curved on itself. It is pierced by a large oval aperture, the foramen magnum, through which the cranial cavity communicates with the vertebral canal." [Wikipedia:Occipital_bone]
comment: Taxon notes: fusion of basi-, exo- and supra-occipitals (and maybe tabular)[Kardong]. Development notes: formed from the sclerotome of the occipital somites[PMID:11523816]. It is not present in living or fossil agnathans or cartilaginous fishes, but appears to have arisen in parallel in many bony fishes. Incorporation of the occipital ver- tebrae into the skull was associated with the an- nexation of the upper part of the spinal cord into the brain, together with the first 2 spinal nerves as cranial nerves XI and XII[PMID:11523816]
subset: uberon_slim
synonym: "occipital squama" RELATED []
synonym: "os occipitale" RELATED LATIN [Wikipedia:Occipital_bone]
xref: EMAPA:25112
xref: FMA:52735
xref: GAID:227
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Gray194.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray194.png/200px-Gray194.png
xref: MA:0001468
xref: MESH:A.02.835.232.781.572
xref: ncithesaurus:Occipital_Bone
xref: OpenCyc:Mx4rwQtsiZwpEbGdrcN5Y29ycA
xref: SCTID:181796003
is_a: UBERON:0010428 {source="FMA"} ! flat bone
is_a: UBERON:0011164 ! neurocranium bone
relationship: connected_to UBERON:0001092 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! first cervical vertebra
relationship: connected_to UBERON:0001677 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! sphenoid bone
relationship: develops_from UBERON:0003089 {source="PMID:11523816"} ! sclerotome
relationship: overlaps UBERON:0002241 {source="MA-modified", notes="basi paired exo and supra occipital bones"} ! chondrocranium
relationship: overlaps UBERON:0003113 {notes="interparietal (postparietal)"} ! dermatocranium
relationship: part_of UBERON:0001703 {source="FMA"} ! neurocranium
relationship: part_of UBERON:0005902 {source="FMA"} ! occipital region
[Term]
id: UBERON:0001677
name: sphenoid bone
def: "an unpaired bone situated at the base of the skull in front of the temporal bone and basilar part of the occipital bone. The sphenoid bone is one of the seven bones that articulate to form the orbit. Its shape somewhat resembles that of a butterfly or bat with its wings extended." [Wikipedia:Sphenoid_bone]
comment: part of viscerocranium in FMA, part of chondrocranium in MA
subset: uberon_slim
synonym: "butterfly bone" RELATED [Wikipedia:Sphenoid_bone]
synonym: "os sphenoidale" EXACT [FMA:52736, FMA:TA]
synonym: "os sphenoidale" RELATED LATIN [Wikipedia:Sphenoid_bone]
synonym: "os sphenoidale" RELATED [Wikipedia:Sphenoid_bone]
synonym: "os sphenoidum" RELATED [Wikipedia:Sphenoid_bone]
synonym: "sphenoid" EXACT []
synonym: "sphenoidal bone" EXACT []
xref: EMAPA:18340
xref: FMA:52736
xref: GAID:230
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cranial_bones2.jpg/200px-Illu_cranial_bones2.jpg
xref: MA:0001472
xref: MESH:A.02.835.232.781.802
xref: ncithesaurus:Sphenoid_Bone
xref: OpenCyc:Mx4rwAU9XpwpEbGdrcN5Y29ycA
xref: SCTID:272676008
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone
relationship: connected_to UBERON:0000209 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! tetrapod frontal bone
relationship: connected_to UBERON:0001676 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! occipital bone
relationship: connected_to UBERON:0001679 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! ethmoid bone
relationship: connected_to UBERON:0002396 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! vomer
relationship: develops_from UBERON:0009193 {source="cjm"} ! sphenoid bone cartilage condensation
relationship: overlaps UBERON:0002241 {notes="orbito pre and basi sphenoid"} ! chondrocranium
relationship: overlaps UBERON:0003113 {notes="pterygoid process"} ! dermatocranium
relationship: overlaps UBERON:0008895 {notes="alisphenoid"} ! splanchnocranium
relationship: part_of UBERON:0011156 {source="FMA"} ! facial skeleton
[Term]
id: UBERON:0001678
name: temporal bone
def: "The temporal bones are situated at the sides and base of the skull, and lateral to the temporal lobes of the cerebrum." [Wikipedia:Temporal_bone]
comment: The temporal bone consists of four parts: * Squama temporalis * Mastoid portion * Petrous portion (Petrosal ridge) * Tympanic part[WP]. AO notes: Note the Temporal bone is not explicitly categorized to a part of the cranium in FMA. Taxon notes: fusion of squamosal + angular (tympanic annulus) [derm.] + petrosal (prootic + opisthotic)[chond.] + styloid process[splanc.]
subset: uberon_slim
synonym: "os temporale" RELATED LATIN [Wikipedia:Temporal_bone]
xref: EHDAA:6035
xref: EMAPA:17682
xref: EMAPA:18020
xref: FMA:52737
xref: GAID:232
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cranial_bones2.jpg/200px-Illu_cranial_bones2.jpg
xref: MA:0001476
xref: MESH:A.02.835.232.781.885
xref: ncithesaurus:Temporal_Bone
xref: OpenCyc:Mx4rvbkAk5wpEbGdrcN5Y29ycA
xref: SCTID:181795004
xref: VHOG:0000800
is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone
relationship: overlaps UBERON:0002241 {notes="petrosal"} ! chondrocranium
relationship: overlaps UBERON:0003113 {notes="squamosal plus angular", notes="temporal series"} ! dermatocranium
relationship: overlaps UBERON:0008895 {notes="styloid process"} ! splanchnocranium
[Term]
id: UBERON:0001679
name: ethmoid bone
def: "a bone in the skull that separates the nasal cavity from the brain. As such, it is located at the roof of the nose, between the two orbits. The cubical bone is lightweight due to a spongy construction. The ethmoid bone is one of the bones that makes up the orbit of the eye[WP]" [Wikipedia:Ethmoid_bone]
comment: AO notes: Note the WP states the Neurocranium contains the ethmoid bone, both MA and FMA place the ethmoid as part of the viscerocranium. FMA also has it in neurocranium (via basicranium). Ideally we would have non-overlapping divisions of the skull, but for now we follow FMA. Taxon notes: todo - homology e.g. mesethmoid of teleost
subset: uberon_slim
synonym: "ethmoid" EXACT [FMA:52740]
synonym: "ethmoidal bone" EXACT [MP:0000101]
synonym: "os ethmoidale" EXACT [Wikipedia:Ethmoid]
synonym: "os ethmoidale" EXACT [FMA:52740, FMA:TA]
xref: BTO:0004140
xref: EMAPA:19018
xref: FMA:52740
xref: GAID:212
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg
xref: MA:0001483
xref: MESH:A.02.835.232.781.292
xref: ncithesaurus:Ethmoid_Bone
xref: OpenCyc:Mx4rvuUPh5wpEbGdrcN5Y29ycA
xref: SCTID:272674006
xref: VHOG:0001317
is_a: UBERON:0002513 {source="Kardong"} ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0011164 ! neurocranium bone
relationship: connected_to UBERON:0000209 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! tetrapod frontal bone
relationship: connected_to UBERON:0001677 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! sphenoid bone
relationship: connected_to UBERON:0002396 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! vomer
relationship: develops_from UBERON:0006227 {evidence="definitional"} ! ethmoid bone primordium
relationship: part_of UBERON:0002517 ! basicranium
relationship: part_of UBERON:0011156 ! facial skeleton
relationship: part_of UBERON:0011241 ! ethmoid region
[Term]
id: UBERON:0001680
name: lacrimal bone
def: "the smallest and most fragile bone of the face, is situated at the front part of the medial wall of the orbit. It has two surfaces and four borders. In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species." [Wikipedia:Lacrimal_bone]
comment: In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species[WP, ISBN 0-03-910284-X]
subset: uberon_slim
subset: vertebrate_core
synonym: "infraorbital 1" RELATED SENSU [TODO:TODO, VHOG:0001149, ZFA:0000223]
synonym: "lachrymal bone" EXACT []
synonym: "lachrymal bone - infraorbital 1" RELATED [VHOG:0001149]
synonym: "lacrimal" BROAD []
synonym: "lacrimal - infraorbital 1" RELATED [VHOG:0001149]
synonym: "lacrymal bone" EXACT []
synonym: "lacrymal bone - infraorbital 1" RELATED [VHOG:0001149]
synonym: "os lacrimale" RELATED LATIN [Wikipedia:Lacrimal_bone]
xref: FMA:52741
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png
xref: MA:0001486
xref: ncithesaurus:Lacrimal_Bone
xref: SCTID:272675007
xref: VHOG:0001149
property_value: "dubious_for_taxon" NCBITaxon:8292
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: overlaps UBERON:0001697 {source="ZFA-modified"} ! orbital region
relationship: part_of UBERON:0003113 {source="Kardong", notes="orbital series"} ! dermatocranium
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0001681
name: nasal bone
def: "One of two small oblong bones, varying in size and form in different individuals; they are placed side by side at the middle and upper part of the face, and form, by their junction, 'the bridge' of the nose[WP]. Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish[ZFA]." [Wikipedia:Nasal_bone, ZFIN:curator]
comment: Taxon notes: In primitive bony fish and tetrapods, the nasal bones are the most anterior of a set of four paired bones forming the roof of the skull, being followed in sequence by the frontals, the parietals, and the postparietals. Their form in living species is highly variable, depending on the shape of the head, but they generally form the roof of the snout or beak, running from the nostrils to a position short of the orbits. In most animals, they are generally therefore proportionally larger than in humans or great apes, because of the shortened faces of the latter. Turtles, unusually, lack nasal bones, with the prefrontal bones of the orbit reaching all the way to the nostrils (ISBN 0-03-910284-X)
subset: uberon_slim
subset: vertebrate_core
synonym: "os nasale" RELATED LATIN [Wikipedia:Nasal_bone]
xref: AAO:0000312
xref: EMAPA:19202
xref: FMA:52745
xref: GAID:222
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg
xref: MA:0001494
xref: MESH:A.02.835.232.781.324.665
xref: ncithesaurus:Nasal_Bone
xref: OpenCyc:Mx4rwGOTZJwpEbGdrcN5Y29ycA
xref: SCTID:181801008
xref: TAO:0000365
xref: VHOG:0001370
xref: ZFA:0000365
property_value: UBPROP:0000001 "Paired bone of intramembranous origin that roofs the olfactory capsule.[AAO]" xsd:string
property_value: UBPROP:0000001 "Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish Cubbage and Mabee, 1996.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps mesethmoid-nasal joint (TAO:0001677)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO]" xsd:string
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0010428 {source="FMA"} ! flat bone
relationship: part_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0003113 {source="Kardong", notes="facial series"} ! dermatocranium
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0001682
name: palatine bone
def: "A bone situated at the back part of the nasal cavity between the maxilla and the pterygoid process of the sphenoid. It contributes to the walls of three cavities: the floor and lateral wall of the nasal cavity, the roof of the mouth, and the floor of the orbit; it enters into the formation of two fossæ, the pterygopalatine and pterygoid fossæ; and one fissure, the inferior orbital fissure. he palatine bone somewhat resembles the letter L, and consists of a Horizontal plate of palatine bone and a Perpendicular plate of palatine bone and three outstanding processes—viz., the Pyramidal process of palatine bone, which is directed backward and lateralward from the junction of the two parts, and the Orbital process of palatine bone and Sphenoidal process of palatine bone, which surmount the vertical part, and are separated by a deep notch, the sphenopalatine notch. The human palatine articulates with six bones: the sphenoid, ethmoid, maxilla, inferior nasal concha, vomer and opposite palatine. In bony fish the palatine bone consists of the perpendicular plate only, lying on the inner edge of the maxilla[WP]." [Wikipedia:Palatine_bone]
comment: Fusion of dermopalatine+autopalatine
subset: uberon_slim
synonym: "dermopalatine" NARROW [http://palaeos.com/vertebrates/glossary/glossaryD.html]
synonym: "palatine" EXACT []
xref: FMA:52746
xref: http://upload.wikimedia.org/wikipedia/commons/4/44/Gray996.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Gray996.png/200px-Gray996.png
xref: MA:0001495
xref: ncithesaurus:Palatine_Bone
xref: SCTID:244654005
xref: TAO:0000015
property_value: UBPROP:0000001 "Dermal bone that forms the antero-lateral region of the palate and is located ventral to the autopalatine. The dermopalatine is bilaterally paired and usually bears teeth.[TAO]" xsd:string
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: part_of UBERON:0003113 {source="Kardong", notes="palatal series"} ! dermatocranium
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0001683
name: zygomatic bone
def: "The zygomatic bone is a paired dermal bone which articulates with the maxilla. In humans it also articulates with the temporal bone, the sphenoid bone and the frontal bone. The zygomatic is homologous to the jugal bone of other tetrapods. It is situated at the upper and lateral part of the face and forms the prominence of the cheek, part of the lateral wall and floor of the orbit, and parts of the temporal and infratemporal fossae. It presents a malar and a temporal surface; four processes, the frontosphenoidal, orbital, maxillary, and temporal; and four borders[WP,modified]." [Wikipedia:Zygomatic_bone]
comment: Taxon notes: vHOG says is homologous to infraorbital 3.
subset: uberon_slim
synonym: "cheek bone" EXACT []
synonym: "jugal" RELATED [Wikipedia:Zygomatic_bone]
synonym: "jugal bone" RELATED [GAID:225, Wikipedia:Zygomatic_bone]
synonym: "jugale" RELATED SENSU []
synonym: "malar bone" EXACT [FMA:52747]
synonym: "orbital bone" EXACT []
synonym: "os zygomaticum" EXACT [FMA:52747, FMA:TA]
synonym: "os zygomaticum" RELATED LATIN [Wikipedia:Zygomatic_bone]
synonym: "os zygomaticus" RELATED [Wikipedia:Zygomatic_bone]
synonym: "zygoma" RELATED [Wikipedia:Zygomatic_bone]
synonym: "zygoma" RELATED [GAID:225]
synonym: "zygomatic" RELATED []
xref: EMAPA:25111
xref: FMA:52747
xref: GAID:225
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray164.png/200px-Gray164.png
xref: MA:0001497
xref: SCTID:272683001
xref: VHOG:0001638
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: overlaps UBERON:0001697 {source="Kardong"} ! orbital region
relationship: part_of UBERON:0001567 ! cheek
relationship: part_of UBERON:0003113 {source="Kardong", notes="orbital series"} ! dermatocranium
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0001684
name: mandible
def: "A dentary bone that is the only bone in one of the lateral halves of the lower jaw skeleton." [Wikipedia:Human_mandible, Wikipedia:Mandible]
comment: Editor notes: consider merging with dentary - for now we make it a mammal-specific subclass. Terminology notes: 'mandible' also refers to either the upper OR lower part of the beak in birds. AO notes: Note in ZFA 'mandible' is a syn for the ventral mandibular arch, which is a portion of the 1st pharyngeal arch; however the term 'mandibular symphysis' refers to the dentary
subset: uberon_slim
synonym: "inferior maxillary bone" EXACT []
synonym: "lower jaw" BROAD SENSU []
synonym: "lower jaw bone" BROAD SENSU []
synonym: "lower mandibula" NARROW SENSU [Wikipedia:Mandible]
synonym: "mammaliam mandible" EXACT []
synonym: "mandibula" RELATED [BTO:0001748]
synonym: "mandibula" RELATED LATIN [Wikipedia:Human_mandible]
synonym: "mandibular series" RELATED [ZFA:0001273]
synonym: "mandibulla" EXACT []
xref: BTO:0001748
xref: EFO:0001965
xref: EHDAA2:0001059
xref: EHDAA:8007
xref: EMAPA:18290
xref: FMA:52748
xref: GAID:68
xref: galen:Mandible
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray176.png/200px-Gray176.png
xref: MA:0001487
xref: MESH:A.02.835.232.781.324.502.632
xref: ncithesaurus:Mandible
xref: SCTID:181812008
is_a: UBERON:0002514 {source="EHDAA2"} ! intramembranous bone
is_a: UBERON:0004742 ! dentary
[Term]
id: UBERON:0001685
name: hyoid bone
def: "The hyoid bone (lingual bone) (Latin os hyoideum) is a horseshoe shaped bone situated in the anterior midline of the neck between the chin and the thyroid cartilage. At rest, it lies at the level of the base of the mandible in the front and the third cervical vertebra behind. It is the only bone in the human skeleton not articulated to any other bone. It is held in place by thyroid ligaments. The hyoid bone provides attachment to the muscles of the floor of the mouth and the tongue above, the larynx below, and the epiglottis and pharynx behind. Its name is derived from the Greek word hyoeides meaning 'shaped like the letter upsilon' (υ). [WP,unvetted]." [Wikipedia:Hyoid_bone]
comment: Taxon notes: The hyoid bone is derived from the lower half of the second gill arch in fish, which separates the first gill slit from the spiracle. In many animals, it also incorporates elements of other gill arches, and has a correspondingly greater number of cornua. Amphibians and reptiles may have many cornua, while mammals (including humans) have two pairs, and birds only one. In birds, and some reptiles, the body of the hyoid is greatly extended forward, creating a solid bony support for the tongue. The howler monkey Alouatta has a pneumatized hyoid bone, one of the few cases of postcranial pneumatization of bones outside Saurischia.[WP]
subset: uberon_slim
synonym: "hyoid" RELATED [Wikipedia:Hyoid_bone]
synonym: "hyoid bone" RELATED [Wikipedia:Hyoid_bone]
synonym: "hyoideum" RELATED [Wikipedia:Hyoid_bone]
synonym: "lingual bone" RELATED [Wikipedia:Hyoid_bone]
synonym: "os hyoideum" RELATED [Wikipedia:Hyoid_bone]
synonym: "os hyoideum" RELATED LATIN [Wikipedia:Hyoid_bone]
xref: AAO:0000684
xref: EMAPA:18650
xref: EMAPA:18840
xref: FMA:52749
xref: GAID:197
xref: http://upload.wikimedia.org/wikipedia/commons/1/1f/Gray186.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Gray186.png/200px-Gray186.png
xref: MA:0001484
xref: MESH:A.02.835.232.409
xref: ncithesaurus:Hyoid_Bone
xref: SCTID:263352000
xref: VHOG:0001325
property_value: UBPROP:0000001 "Paired processes that extend posterolaterally from the posterior margin of the hyoid plate. These processes are the ossified posteromedial processes and invest the laryngeal apparatus.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of hyoid plate (AAO:0000664)[AAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: has_developmental_contribution_from UBERON:0003066 {source="Wikipedia"} ! pharyngeal arch 2
relationship: has_developmental_contribution_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3
relationship: part_of UBERON:0008895 ! splanchnocranium
relationship: part_of UBERON:0010272 ! hyoid apparatus
[Term]
id: UBERON:0001686
name: auditory ossicle
def: "One of 3 small bones contained within the middle ear space and serve to transmit sounds from the air to the fluid-filled labyrinth. The absence of the auditory ossicles would constitute a moderate-to-severe hearing loss. The term 'ossicles' literally means 'tiny bones' and commonly refers to the auditory ossicles, though the term may refer to any small bone throughout the body. [WP,unvetted]." [Wikipedia:Auditory_ossicle]
comment: Taxon and editor notes: This should probably be restricted to mammals - the AAO/XAO structures may group non-homologous structures [Wikipedia:Evolution_of_mammalian_auditory_ossicles] see https://github.com/seger/aao/issues/5. Development notes: Studies have shown that ear bones in mammal embryos are attached to the dentary, which is part of the jaw. These are ossified portions of cartilage -- called Meckel's cartilage -- that are attached to the jaw. As the embryo develops, the cartilage hardens to form bone. Later in development, the bone structure breaks loose from the jaw and migrates to the inner ear area. The structure is known as the middle ear, and is made up of the incus, stapes, malleus, and tympanic membrane. These correspond to the quadrate, prearticular, articular, and angular structures in the reptile jaw. For this reason, researchers believe the similarity of the results shows that mammals and reptiles have a common ancestry.[WP]
subset: uberon_slim
synonym: "auditory bone" EXACT []
synonym: "auditory ossicle" RELATED [MA:0000254]
synonym: "ear bone" RELATED [MA:0000254]
synonym: "middle ear bone" RELATED []
synonym: "middle ear ossicle" EXACT [MP:0005105]
synonym: "ossicle" BROAD [EMAPA:17824, Wikipedia:Auditory_ossicle]
xref: AAO:0011015
xref: EHDAA2:0001183
xref: EHDAA:5697
xref: EMAPA:17824
xref: EV:0100360
xref: FMA:52750
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b0/Illu_auditory_ossicles.jpg/200px-Illu_auditory_ossicles.jpg
xref: MA:0000254
xref: ncithesaurus:Auditory_Ossicle
xref: VHOG:0000461
xref: XAO:0000214
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0003457 ! head bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0003099 {source="PMID:11237469", source="UBERONREF:0000002"} ! cranial neural crest
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear
relationship: part_of UBERON:0008895 {source="PMID:11523816"} ! splanchnocranium
[Term]
id: UBERON:0001687
name: stapes
def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used[WP,unvetted]." [doi:10.1111/j.1469-7580.2005.00441.x, Wikipedia:Stapes]
comment: Editor notes: Consider adding classes for homologs; we do not include a class for hyomandibula in uberon, no need to generalize the TAO/ZFA class. Taxon notes (via VHOG): "This structure [the hyomandibular], on ontogenic grounds alone, can be considered homologous with the amphibian and reptilian columella and the mammalian stapes." Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357? Development notes: As the stapes first develops embryologically from the 6th to 8th week of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure[WP] The stapes develops at the cranial end of the second branchial arch through an independent anlage of the cartilage of this arch. Between the stapedial anlage and the cranial end of the Reichert's cartilage there is a formation called the interhyale, the internal segment of which gives rise to the tendon of the stapedial muscle. The stapedial anlage is a unique formation with two distinct parts: the superior part that will comprise the base and the inferior part that will be crossed by the stapedial artery during embryonic development and will constitute the limbs and the head of the stapes. According to the results, the otic capsule is not involved in formation of the base of the stapes.[doi:10.1111/j.1469-7580.2005.00441.x]
subset: uberon_slim
synonym: "columella" RELATED SENSU [Wikipedia:Stapes]
synonym: "columella auris" RELATED [AAO:0000580]
synonym: "columellare" RELATED [AAO:0000580]
synonym: "interstapediale" RELATED [AAO:0000580]
synonym: "mediostapediale" RELATED [AAO:0000580]
synonym: "mesostapediale" RELATED [AAO:0000580]
synonym: "os columellare" RELATED [AAO:0000580]
synonym: "os intermedium" RELATED [AAO:0000580]
synonym: "stapellos" RELATED LATIN [Wikipedia:Stapes]
synonym: "stapes" RELATED [AAO:0000580]
synonym: "stelidium" RELATED [AAO:0000580]
synonym: "stilus columellare" RELATED [AAO:0000580]
synonym: "stirrup" EXACT []
xref: EMAPA:18585
xref: FMA:52751
xref: GAID:868
xref: http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray918.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/Gray918.png/200px-Gray918.png
xref: MA:0001217
xref: MESH:A.09.246.397.247.806
xref: ncithesaurus:Stapes
xref: OpenCyc:Mx4rv5UnkZwpEbGdrcN5Y29ycA
xref: SCTID:264199009
xref: VHOG:0000688
property_value: "homologous_to" AAO:0000580
property_value: "homologous_to" UBERON:0011606
is_a: UBERON:0001686 ! auditory ossicle
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004119 ! endoderm-derived structure
disjoint_from: UBERON:0008283 ! columnella
relationship: develops_from UBERON:0004368 {contradicted_by="doi:10.1111/j.1469-7580.2006.00524.x", source="classical definition"} ! Reichert's cartilage
relationship: develops_from UBERON:0010055 {source="definitional"} ! stapes cartilage condensation
[Term]
id: UBERON:0001688
name: incus
def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Incus]
subset: uberon_slim
synonym: "quadrate - incus" BROAD [VHOG:0000689]
xref: EMAPA:18583
xref: FMA:52752
xref: GAID:866
xref: http://upload.wikimedia.org/wikipedia/commons/d/df/Gray917.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray917.png/200px-Gray917.png
xref: MA:0001215
xref: MESH:A.09.246.397.247.362
xref: ncithesaurus:Incus
xref: SCTID:272649008
xref: VHOG:0000689
property_value: "homologous_to" UBERON:0006597
is_a: UBERON:0001686 ! auditory ossicle
is_a: UBERON:0002513 ! endochondral bone
relationship: develops_from UBERON:0004362 {source="Kardong"} ! pharyngeal arch 1
relationship: develops_from UBERON:0007374 {source="EMAPA-implied"} ! incus cartilage condensation
[Term]
id: UBERON:0001689
name: malleus
def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Malleus]
subset: uberon_slim
synonym: "Malleus" RELATED LATIN [Wikipedia:Malleus]
xref: EMAPA:18584
xref: FMA:52753
xref: GAID:867
xref: http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray916.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray916.png/200px-Gray916.png
xref: MA:0001216
xref: MESH:A.09.246.397.247.524
xref: ncithesaurus:Malleus
xref: SCTID:264090005
xref: VHOG:0000690
is_a: UBERON:0001686 ! auditory ossicle
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0003107 {source="Wikipedia"} ! Meckel's cartilage
relationship: develops_from UBERON:0004362 {source="Kardong"} ! pharyngeal arch 1
relationship: develops_from UBERON:0010054 {source="cjm"} ! malleus cartilage condensation
[Term]
id: UBERON:0001690
name: ear
def: "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "auditory apparatus" RELATED []
synonym: "auris" RELATED [BTO:0000368]
xref: AAO:0011014
xref: BTO:0000368
xref: EFO:0000826
xref: EHDAA2:0000423
xref: EHDAA:502
xref: EMAPA:16193
xref: EV:0100353
xref: FMA:52780
xref: GAID:62
xref: galen:Ear
xref: http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg
xref: MA:0000236
xref: MAT:0000138
xref: MESH:A.01.456.313
xref: MIAA:0000138
xref: ncithesaurus:Ear
xref: NIF_GrossAnatomy:birnlex_1062
xref: OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA
xref: SCTID:1910005
xref: VHOG:0000330
xref: XAO:0000189
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0002105 ! vestibulo-auditory system
[Term]
id: UBERON:0001691
name: external ear
def: "Part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]." [GO:0042473, Wikipedia:External_ear]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auricular region" BROAD []
synonym: "auricular region of head" EXACT []
synonym: "auris externa" RELATED [BTO:0002100]
synonym: "outer ear" EXACT []
xref: AAO:0011037
xref: BTO:0002100
xref: EHDAA2:0000462
xref: EHDAA:3786
xref: EMAPA:16991
xref: EV:0100354
xref: FMA:52781
xref: GAID:104
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Gray907.png/200px-Gray907.png
xref: MA:0000258
xref: MAT:0000147
xref: MESH:A.09.246.272
xref: MIAA:0000147
xref: ncithesaurus:External_Ear
xref: NIF_GrossAnatomy:birnlex_1705
xref: OpenCyc:Mx4rwOHtXJwpEbGdrcN5Y29ycA
xref: SCTID:181176000
xref: VHOG:0000311
xref: XAO:0000190
is_a: UBERON:0001444 ! subdivision of head
disjoint_from: UBERON:0006618 ! atrium auricular region
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0001692
name: basioccipital bone
def: "Large median unpaired cartilage bone that contacts the exocciptal, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials[ZFA]." [Wikipedia:Basilar_part_of_occipital_bone, ZFIN:curator]
comment: TODO - check FMA
subset: uberon_slim
subset: vertebrate_core
synonym: "basi-occipital" EXACT []
synonym: "basilar part of occipital bone" EXACT []
synonym: "basioccipital" EXACT []
synonym: "basioccipital bone" EXACT []
synonym: "pars basilaris ossis occipitalis" RELATED LATIN [Wikipedia:Basilar_part_of_occipital_bone]
xref: AAO:0000039
xref: EMAPA:18705
xref: FMA:52858
xref: http://upload.wikimedia.org/wikipedia/commons/c/c4/Parsbasilaris%28young%29.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c4/Parsbasilaris%28young%29.PNG/200px-Parsbasilaris%28young%29.PNG
xref: MA:0001462
xref: SCTID:138976007
xref: TAO:0000472
xref: VHOG:0001152
xref: ZFA:0000472
property_value: UBPROP:0000001 "An unpaired medial bone contributing to the ventral margin of the foramen magnum that extends into the floor of the brain cavity. It can contribute to the centromedial portion of the occipital condyle.[AAO]" xsd:string
property_value: UBPROP:0000001 "Chondral bone that articulates with the exoccipitals dorsally, the prootics anteriorly, the parasphenoid ventrally, and the first free vertebra posteriorly. The basioccipital forms the floor of the foramen magnum. The basioccipital is an unpaired medial bone.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps basioccipital-exoccipital joint (TAO:0002038)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps parasphenoid-basioccipital joint (TAO:0001832)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0011164 ! neurocranium bone
relationship: develops_from UBERON:0006209 ! basioccipital cartilage condensation
relationship: part_of UBERON:0001676 {source="Kardong", gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! occipital bone
relationship: part_of UBERON:0002241 ! chondrocranium
relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium
relationship: part_of UBERON:0005902 {source="TAO"} ! occipital region
[Term]
id: UBERON:0001693
name: exoccipital bone
def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [Wikipedia:Lateral_parts_of_occipital_bone, ZFIN:curator]
comment: TODO - check FMA - currently we place this as both of a zone of bone organ and an (endochondral) bone. Removed endochondral bone classification for now, violates disjointness axiom
subset: uberon_slim
subset: vertebrate_core
synonym: "exoccipital" EXACT [FMA:52859]
synonym: "lateral part of occipital bone" EXACT [FMA:52859]
synonym: "pars lateralis" RELATED LATIN [Wikipedia:Lateral_parts_of_occipital_bone]
synonym: "pars lateralis" RELATED [Wikipedia:Lateral_parts_of_occipital_bone]
xref: AAO:0000147
xref: EMAPA:18708
xref: FMA:52859
xref: http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray131.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Gray131.png/200px-Gray131.png
xref: MA:0001464
xref: SCTID:139279001
xref: TAO:0000661
xref: VHOG:0001151
xref: ZFA:0000661
property_value: UBPROP:0000001 "Endochondral bone that articulates with the epiotic dorsally, the pterotic and intercalar laterally and the basioccipital medio-ventrally. The exoccipitals form the lateral borders of the foramen magnum and houses the foramina for the passage of the vagus and glossopharyngeal nerves, X and IX respectively. The exoccipital is a paired bone.[TAO]" xsd:string
property_value: UBPROP:0000001 "Endochondral bone that forms the posterior end of the neurocranium and the margin of the foramen magnum. In addition, this bone forms either part of or all or the occipital condyle.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from occipital arch cartilage (TAO:0001504)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps basioccipital-exoccipital joint (TAO:0002038)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps prootic-exoccipital joint (TAO:0002034)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string
is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone
is_a: UBERON:0011164 ! neurocranium bone
relationship: develops_from UBERON:0009635 {source="ZFA"} ! parachordal cartilage
relationship: develops_from UBERON:0010752 ! exoccipital cartilage condensation
relationship: part_of UBERON:0001676 {source="Kardong", gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! occipital bone
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
relationship: part_of UBERON:0005902 {source="TAO"} ! occipital region
[Term]
id: UBERON:0001694
name: petrous part of temporal bone
def: "The temporal bones are situated at the sides and base of the skull. The temporal bone supports that part of the face known as the temple. [WP,unvetted]." [Wikipedia:Petrous_bone]
comment: derivative of prootic and opisthotic
subset: uberon_slim
synonym: "pars petrosa (os temporale)" EXACT [FMA:52871]
synonym: "pars petrosa ossis temporalis" EXACT []
synonym: "petromastoid part of temporal bone" EXACT [FMA:52871]
synonym: "petrosal bone" EXACT [FMA:52871]
synonym: "petrous bone" EXACT [FMA:52871]
synonym: "temporal bone petrous part" EXACT []
xref: EHDAA2:0001452
xref: EMAPA:17683
xref: FMA:52871
xref: GAID:234
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray137.png/200px-Gray137.png
xref: MA:0001477
xref: MESH:A.02.835.232.781.885.681
xref: ncithesaurus:Ciliary_Process
xref: SCTID:361733004
xref: VHOG:0001553
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001678 ! temporal bone
relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium
[Term]
id: UBERON:0001695
name: squamous part of temporal bone
def: "the thin, platelike part of the temporal bone." [MP:0004423, Wikipedia:Squama_temporalis, Wikipedia:Squamosal]
comment: Taxon notes: The squamosal bone, which is homologous with the squama, and forms the side of the cranium in many bony fish and tetrapods. Primitively, it is a flattened plate-like bone, but in many animals it is narrower in form, for example, where it forms the boundary between the two temporal fenestrae of diapsid reptiles. Editor notes: consider separate class for squamosal
synonym: "pars squamosa (os temporale)" EXACT []
synonym: "squama temporalis" EXACT [Wikipedia:Squama_temporalis]
synonym: "squama temporalis" RELATED LATIN [Wikipedia:Squama_temporalis]
synonym: "squamosal" EXACT [AAO:0000574]
synonym: "squamosal bone" EXACT [MA:0001473]
synonym: "squamosal bone" EXACT []
synonym: "squamous bone" EXACT []
synonym: "temporal bone squamous part" EXACT [VHOG:0001561]
xref: AAO:0000574
xref: EMAPA:18021
xref: FMA:52883
xref: http://upload.wikimedia.org/wikipedia/commons/f/fd/Gray144.png
xref: MA:0001473
xref: SCTID:138672006
xref: VHOG:0001561
property_value: UBPROP:0000001 "Paired, intramembranous bones that lie at the posterolateral margins of the skull. Lateral and dorsal to the quadrate.[AAO]" xsd:string
is_a: UBERON:0002514 {source="EHDAA2-inferred"} ! intramembranous bone
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0011164 ! neurocranium bone
relationship: develops_from UBERON:0010751 ! squamous part of temporal bone primordium
relationship: part_of UBERON:0001678 ! temporal bone
relationship: part_of UBERON:0003113 {source="Kardong", notes="temporal series"} ! dermatocranium
relationship: part_of UBERON:0004339 {source="PMID:11523816", source="EHDAA2"} ! vault of skull
[Term]
id: UBERON:0001697
name: orbital region
def: "Anatomical cluster that is a anterolateral part of the cranium and structurally supports the eye. Includes bones formed and located in sclerotic layer of eyeball." [TAO:0001410, Wikipedia:Orbit_(anatomy)]
comment: AO notes: in FMA, this overlaps with bones such as the maxilla and sphenoid; in ZFA, individual bones are part of the orbit
subset: uberon_slim
subset: vertebrate_core
synonym: "bony orbit" EXACT []
synonym: "eye socket" EXACT []
synonym: "orbit" RELATED [ZFA:0001410]
synonym: "orbit of skull" EXACT [FMA:53074]
xref: BTO:0004687
xref: FMA:53074
xref: GAID:223
xref: galen:Orbit
xref: MA:0002482
xref: MESH:A.02.835.232.781.324.690
xref: ncithesaurus:Orbit
xref: OpenCyc:Mx4rvW8EgZwpEbGdrcN5Y29ycA
xref: TAO:0001410
xref: XAO:0003171
xref: ZFA:0001410
property_value: UBPROP:0000001 "Anatomical cluster that is a anterolateral part of the cranium and structurally supports the eye.[TAO]" xsd:string
is_a: UBERON:0000477 {source="ZFA"} ! anatomical cluster
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: encloses UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0001698
name: foramen ovale of skull
def: "one of the larger of the several holes at the base of the skull that transmit nerves through the skull. The foramen ovale is situated in the anterior part of the sphenoid bone, posteriolateral to the foramen rotundum.." [Wikipedia:Foramen_ovale_(skull)]
synonym: "foramen ovale" NARROW [AAO:0000169, FMA:53155]
synonym: "foramen ovale (skull)" EXACT [FMA:53155]
synonym: "foramen ovale basis cranii" EXACT [galen:ForamenOvaleBasisCranii]
xref: AAO:0000169
xref: EHDAA2:0000551
xref: EHDAA:10627
xref: EMAPA:18711
xref: FMA:53155
xref: galen:ForamenOvaleBasisCranii
xref: VHOG:0001189
is_a: UBERON:0005744 ! cranial conduit
disjoint_from: UBERON:0004754 ! foramen ovale of heart
relationship: part_of UBERON:0003129 ! skull
relationship: surrounded_by UBERON:0001677 ! sphenoid bone
[Term]
id: UBERON:0001699
name: sensory root of facial nerve
def: "The nervus intermedius, or intermediate nerve, is the part of the facial nerve (cranial nerve VII) located between the motor component of the facial nerve and the vestibulocochlear nerve (cranial nerve VIII). It contains the sensory and parasympathetic fibers of the facial nerve. Upon reaching the facial canal, it joins with the motor root of the facial nerve at the geniculate ganglion. [WP,unvetted]." [Wikipedia:Intermediate_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "intermediate nerve" EXACT []
synonym: "nervus intermedius" EXACT [FMA:53410, FMA:TA]
synonym: "Wrisberg's nerve" EXACT []
xref: FMA:53410
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray788.png/200px-Gray788.png
xref: SCTID:279927001
xref: TAO:0000679
xref: ZFA:0000679
is_a: UBERON:0004674 ! facial nerve root
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0002342 {source="Wikipedia"} ! neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0001700
name: geniculate ganglion
def: "The geniculate ganglion is an L-shaped collection of fibers and sensory neurons of the facial nerve located in the facial canal of the head. It receives fibers from the motor, sensory, and parasympathetic components of the facial nerve and sends fibers that will innervate the lacrimal glands, submandibular glands, sublingual glands, tongue, palate, pharynx, external auditory meatus, stapedius, posterior belly of the digastric muscle, stylohyoid muscle, and muscles of facial expression. Sensory and parasympathetic inputs are carried into the geniculate ganglion via the nervus intermedius. Motor fibers are carried via the facial nerve proper. The greater petrosal nerve, which carries sensory fibers as well as preganglionic parasympathetic fibers, emerges from the anterior aspect of the ganglion. The geniculate ganglion is one of several ganglia of the head and neck. Like the others, it is a bilaterally distributed structure, with each side of the face having a geniculate ganglion. [WP,unvetted]." [Wikipedia:Geniculate_ganglion]
comment: Editor notes: resolve facial VII vs geniculate (see EHDAA2)
subset: uberon_slim
subset: vertebrate_core
synonym: "facial ganglion" EXACT []
synonym: "facial VII ganglion" EXACT []
synonym: "ganglion genicularum" EXACT []
synonym: "ganglion geniculi nervi facialis" RELATED LATIN [Wikipedia:Geniculate_ganglion]
synonym: "genicular ganglion" EXACT []
synonym: "gVII" RELATED []
xref: EFO:0003669
xref: EHDAA2:0000491
xref: EHDAA2:0004623
xref: EHDAA:5567
xref: EHDAA:6644
xref: EMAPA:16983
xref: EMAPA:17569
xref: FMA:53414
xref: GAID:718
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray789.png/200px-Gray789.png
xref: MA:0001076
xref: MESH:A.08.340.390.380
xref: ncithesaurus:Geniculate_Ganglion
xref: SCTID:279076005
xref: TAO:0001291
xref: VHOG:0000707
xref: ZFA:0001291
is_a: UBERON:0001714 {source="FMA"} ! cranial ganglion
is_a: UBERON:0001714 ! cranial ganglion
is_a: UBERON:0001714 {source="MA"} ! cranial ganglion
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0005565 {source="ZFA"} ! facio-acoustic neural crest
[Term]
id: UBERON:0001701
name: glossopharyngeal ganglion
def: "the group of neuron cell bodies associated with the ninth cranial nerve." [MP:0001096]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "ganglion of glosspharyngeal nerve" EXACT []
synonym: "gIX" RELATED []
synonym: "glossopharyngeal IX ganglion" EXACT [MA:0001077]
synonym: "petrosal ganglion" NARROW [ZFA:0001301]
xref: EHDAA2:0000710
xref: EHDAA:2838
xref: EMAPA:16795
xref: FMA:53471
xref: MA:0001077
xref: SCTID:244451008
xref: TAO:0001301
xref: VHOG:0000702
xref: ZFA:0001301
is_a: UBERON:0009127 {source="ZFA"} ! epibranchial ganglion
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0005491 {source="ZFA"} ! glossopharyngeal neural crest
relationship: develops_from UBERON:0009125 {source="ZFA"} ! petrosal placode
[Term]
id: UBERON:0001702
name: eyelash
def: "An eyelash or simply lash is one of the hairs that grow at the edge of the eyelid. Eyelashes protect the eye from debris and perform some of the same function as whiskers do on a cat or a mouse in the sense that they are sensitive to being touched, thus providing a warning that an object is near the eye (which is then closed reflexively). The greek word for eyelash is \"blepharis\". This word is often used as a root in biological terms" [Wikipedia:Eyelash]
subset: uberon_slim
synonym: "cilia" RELATED LATIN [Wikipedia:Eyelash]
xref: FMA:53669
xref: GAID:73
xref: http://upload.wikimedia.org/wikipedia/commons/9/96/N2_Human_eye.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/N2_Human_eye.jpg/200px-N2_Human_eye.jpg
xref: MA:0002702
xref: MESH:A.01.456.505.420.504.421
xref: ncithesaurus:Eyelash
xref: OpenCyc:Mx4rvVi41pwpEbGdrcN5Y29ycA
xref: SCTID:244201001
is_a: UBERON:0001037 ! strand of hair
relationship: attaches_to UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001703
name: neurocranium
def: "Subdivision of skeletal system that surrounds and protects the brain. Includes the skull base, sensory capsules and the central part of the skull roof." [PMID:11523816, Wikipedia:Neuroranium, ZFA:0001580]
comment: Development notes: The cartilaginous parts of the neurocranium undergo endochondral ossification in most species; ossification has been lost in cartilaginous fishes, but the cartilaginous condition of the skull of lampreys is considered to be primitive (Kardong, 1995)[PMID:11523816]. The neurocranium arises from paraxial mesoderm in the head (first five somites and the unsegmented somitomeres rostral to the first somite) and from ectoderm via the neural crest. In Chondrichthyes and other cartilaginous vertebrates this portion of the cranium does not ossify; it is not replaced via endochondral ossification[WP]. Composition notes: It includes the following bones: Ethmoid bone, Frontal bone, Occipital bone, Parietal bone, Sphenoid bone, Temporal bone. The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP] AO notes: It seems MA uses 'neurocranium' as a synonym for chondrocranium. Note there are currently some structures part of both viscero and neurocranium - ethmoid, zyogomatic, ...
subset: uberon_slim
subset: vertebrate_core
synonym: "brain box" EXACT []
synonym: "brain case" RELATED [ZFA:0001580]
synonym: "brain pan" RELATED [http://www.thefreedictionary.com/braincase]
synonym: "braincase" RELATED [ZFA:0001580]
xref: AAO:0010153
xref: EHDAA2:0000243
xref: FMA:53672
xref: MA:0000317
xref: SCTID:361731002
xref: TAO:0001580
xref: XAO:0003170
xref: ZFA:0001580
property_value: UBPROP:0000001 "Anatomical cluster that consists of the cartilages and bones that surround the brain.[TAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0011158 {source="FMA"} ! primary subdivision of skull
relationship: develops_from UBERON:0004761 ! cartilaginous neurocranium
relationship: encloses UBERON:0000955 ! brain
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0001704
name: viscerocranium
def: "." [Wikipedia:Facial_skeleton]
comment: This class was made obsolete as it conflated the facial skeleton with the splanchnocranium. The facial skeleton includes: * Inferior nasal concha * Lacrimal bone * Mandible * Maxilla * Nasal bone * Palatine bone * Vomer * Zygomatic bone. The hyoid is sometimes included, and sometimes excluded (FMA includes it) (See also notes for ethmoid bone). The splanchoncranium is the endoskeleton derived from pharyngeal arches.
is_obsolete: true
consider: UBERON:0008895
consider: UBERON:0011156
[Term]
id: UBERON:0001705
name: nail
def: "a horn-like keratin structure covering the dorsal aspect of the terminal phalanges of fingers and toes[WP]." [Wikipedia:Nail_(anatomy)]
comment: TODO: check claw vs nail. A primate's nail consists of the unguis alone; the subunguis has disappeared.
subset: uberon_slim
synonym: "claw" RELATED []
synonym: "talon" RELATED []
xref: BTO:0001719
xref: EFO:0000956
xref: EV:0100159
xref: FMA:54326
xref: GAID:1320
xref: galen:Nail
xref: MA:0002703
xref: MAT:0000158
xref: MESH:A.17.600
xref: MIAA:0000158
xref: ncithesaurus:Nail
xref: OpenCyc:Mx4rvVjJv5wpEbGdrcN5Y29ycA
xref: SCTID:72651009
xref: VHOG:0001361
xref: XAO:0003103
is_a: UBERON:0009564 ! distal limb integumentary appendage
relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! skin basal layer
relationship: part_of UBERON:0001003 {source="FMA"} ! epidermis
relationship: part_of UBERON:0002097 {source="FMA"} ! skin of body
[Term]
id: UBERON:0001706
name: nasal septum
def: "The nasal septum separates the left and right airways in the nose, dividing the two nostrils. It is depressed by the Depressor septi nasi muscle. [WP,unvetted]." [Wikipedia:Nasal_septum]
comment: We follow AAO in making this part of the nasal skeleton
subset: uberon_slim
synonym: "columella nasi" RELATED [Wikipedia:Nasal_septum]
synonym: "nasi columella" RELATED [Wikipedia:Nasal_septum]
synonym: "septal cartilage" RELATED [Wikipedia:Nasal_septum]
synonym: "septum mobile nasi" RELATED [Wikipedia:Nasal_septum]
synonym: "septum nasi" RELATED [Wikipedia:Nasal_septum]
synonym: "septum nasi" RELATED LATIN [Wikipedia:Nasal_septum]
synonym: "septum of the nose" RELATED [Wikipedia:Nasal_septum]
xref: AAO:0000559
xref: AAO:0010135
xref: EHDAA2:0001234
xref: EHDAA2:0004104
xref: EHDAA:6809
xref: EMAPA:17608
xref: FMA:54375
xref: GAID:115
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Gray854.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray854.png/200px-Gray854.png
xref: MA:0000285
xref: MESH:A.02.165.639
xref: ncithesaurus:Nasal_Septum
xref: OpenCyc:Mx4rv7e-k5wpEbGdrcN5Y29ycA
xref: SCTID:181197004
xref: VHOG:0000017
property_value: UBPROP:0000001 "Medial vertical wall between nasal capsules.[AAO]" xsd:string
property_value: UBPROP:0000001 "Medial, vertical plate that separates the nasal capsules.[AAO]" xsd:string
is_a: UBERON:0003037 ! septum
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0009714 {source="EHDAA2-abduced"} ! intermaxillary process
relationship: part_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0006813 {source="AAO"} ! nasal skeleton
relationship: part_of UBERON:0011241 {source="AAO"} ! ethmoid region
[Term]
id: UBERON:0001707
name: nasal cavity
def: "a large air filled space above and behind the nose in the middle of the face[WP]." [Wikipedia:Nasal_cavity]
comment: the cavity includes and starts at the nares and reaches all the way through to the and includes the choanae, the posterior nasal apertures[HP]
subset: uberon_slim
subset: vertebrate_core
synonym: "cavitas nasalis" RELATED [BTO:0002096]
synonym: "cavitas nasi" RELATED [BTO:0002096]
synonym: "cavity of nose" EXACT []
synonym: "cavum nasi; cavitas nasi" RELATED LATIN [Wikipedia:Nasal_cavity]
synonym: "nasal canal" EXACT [ZFA:0000130]
synonym: "nasal fossa" EXACT [Wikipedia:Nasal_cavity]
synonym: "nasal pit" RELATED []
synonym: "olfactory cavity" RELATED []
synonym: "olfactory pit" RELATED INCONSISTENT [ZFA:0000130]
xref: AAO:0000314
xref: BTO:0002096
xref: EHDAA2:0001226
xref: EHDAA:6801
xref: EMAPA:17604
xref: FMA:54378
xref: GAID:350
xref: http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg
xref: MA:0000284
xref: MESH:A.04.531.449
xref: ncithesaurus:Nasal_Cavity
xref: SCTID:263481003
xref: TAO:0000130
xref: VHOG:0000271
xref: ZFA:0000130
property_value: UBPROP:0000001 "Saclike space internal to the nasal capsule lined by respiratory and sensory epithelium and glandular tissue.[AAO]" xsd:string
is_a: UBERON:0002553 ! anatomical cavity
relationship: develops_from UBERON:0005870 ! olfactory pit
relationship: part_of UBERON:0000004 {source="MA"} ! olfactory apparatus
relationship: part_of UBERON:0001557 {source="MA"} ! upper respiratory tract
[Term]
id: UBERON:0001708
name: jaw skeleton
def: "Subdivision of skeleton which includes upper and lower jaw skeletons." [UBERON:cjm, Wikipedia:Jaw]
comment: TODO: move ZFA:0001227 (it is the entire jaw skeleton). Editor notes: in FMA, the jaw is an organism subdivision cluster, and includes mucosal tissue such as the gingiva as parts. It appears to be skeletal in MA (and has teeth as parts). It is reasonable to assume that ZFA and XAO consider the upper and lower jaws to be skeletal elements or clusters. EHDAA2 also considers these clusters. TODO - follow EHDAA2 model. These arbitrary differences in terminology and classification have to be reconciled with the genuine well-known biological differences in the skeletal elements across vertebrates. Development notes: There are cellular contributions from all three embryonic germ layers: pharyngeal mesoderm, endoderm and neural crest that migrates out of the ectoderm (Noden, 1983).
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior splanchnocranium" RELATED []
synonym: "jaw" EXACT [MA:0001905]
synonym: "jaw cartilage" EXACT [ZFA:0001227]
synonym: "jaws" RELATED []
synonym: "mandibular arch" RELATED [TAO:0001227]
synonym: "mandibular arch skeleton" EXACT [ZFA:0001227]
synonym: "oral jaw skeleton" RELATED []
synonym: "pharyngeal arch 1 skeleton" RELATED []
synonym: "visceral arch 1" RELATED []
xref: AAO:0000988
xref: BTO:0001749
xref: FMA:54396
xref: GAID:214
xref: galen:Jaw
xref: MA:0001905
xref: MESH:A.02.835.232.781.324.502
xref: ncithesaurus:Jaw
xref: OpenCyc:Mx4rvVjjEZwpEbGdrcN5Y29ycA
xref: SCTID:181811001
xref: TAO:0001227
xref: ZFA:0001227
property_value: UBPROP:0000001 "Skeletal and cartilaginous elements of the first pharyngeal arch.[TAO]" xsd:string
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: overlaps UBERON:0008895 ! splanchnocranium
relationship: part_of UBERON:0011595 ! jaw region
[Term]
id: UBERON:0001709
name: upper jaw region
def: "Subdivision of head that consists of the upper jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]." [Wikipedia:Upper_jaw]
comment: AO notes: Note isa/partof difference MA/FMA. See notes for jaw w.r.t skeletal element vs subdivision of head. See also
subset: uberon_slim
subset: vertebrate_core
synonym: "dorsal mandibular arch" RELATED []
synonym: "dorsal pharyngeal arch 1" RELATED INCONSISTENT []
synonym: "maxillary part of mouth" EXACT [FMA:59399]
synonym: "palatoquadrate arch" EXACT []
synonym: "upper pharyngeal jaws" RELATED []
xref: AAO:0000620
xref: EHDAA2:0002118
xref: EHDAA2:0004607
xref: EHDAA:8025
xref: EMAPA:17924
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray189.png/200px-Gray189.png
xref: ncithesaurus:Upper_Jaw
xref: SCTID:362636001
xref: VHOG:0000454
property_value: "spatially_disjoint_from" UBERON:0001710
property_value: UBPROP:0000001 "Superior maxillary arch located on the anterior and lateral sides of the skull.[AAO]" xsd:string
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011595 ! jaw region
relationship: develops_from UBERON:0005868 ! maxillary prominence
relationship: part_of UBERON:0004089 ! midface
[Term]
id: UBERON:0001710
name: lower jaw region
def: "Subdivision of head that consists of the lower jaw skeletal elements plus associated soft tissue (skin, lips, muscle)[cjm]." [Wikipedia:Lower_jaw]
comment: AO notes: Note isa/partof difference MA/FMA. See notes for jaw w.r.t skeletal element vs subdivision of head
subset: uberon_slim
subset: vertebrate_core
synonym: "mandibular part of mouth" EXACT [FMA:59398]
synonym: "mandibular series" RELATED []
xref: AAO:0000272
xref: EFO:0003660
xref: EHDAA2:0001018
xref: EHDAA:7995
xref: EMAPA:17906
xref: FMA:59398
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray176.png/200px-Gray176.png
xref: MESH:A.02.835.232.781.324.502.632
xref: ncithesaurus:Lower_Jaw
xref: SCTID:362637005
xref: VHOG:0000453
property_value: UBPROP:0000001 "Inferior mandibular arch located on the anterior and lateral sides of the skull.[AAO]" xsd:string
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011595 ! jaw region
relationship: develops_from UBERON:0005867 {source="Wikipedia:Mandibular_prominence"} ! mandibular prominence
[Term]
id: UBERON:0001711
name: eyelid
def: "An eyelid is a thin fold of skin that covers and protects an eyeball. With the exception of the prepuce and the labia minora, it has the thinnest skin of the whole body. The levator palpebrae superioris muscle retracts the eyelid to 'open' the eye. This can be either voluntarily or involuntarily. The human eyelid features a row of eyelashes which serve to heighten the protection of the eye from dust and foreign debris, as well as from perspiration. 'Palpebral' (and 'blepharo') means relating to the eyelids. Its key function is to regularly spread the tears and other secretion on the eye surface to keep it moist, since the cornea must be continuously moist. They keep the eyes from drying out when asleep. Moreover, the blink reflex protects the eye from foreign bodies. [WP,unvetted]." [Wikipedia:Eyelid]
comment: AO notes: FMA divides this into skin, fascia, conjunctiva. Consider adding 'eye surface', like MA
subset: uberon_slim
synonym: "blepharon" EXACT []
synonym: "palpebra" EXACT []
synonym: "palpebra inferior, palpebra superior" RELATED LATIN [Wikipedia:Eyelid]
synonym: "palpebrae" RELATED PLURAL []
xref: BTO:0002241
xref: EHDAA2:0000487
xref: EHDAA:9037
xref: EMAPA:17829
xref: EV:0100338
xref: FMA:54437
xref: GAID:72
xref: http://upload.wikimedia.org/wikipedia/commons/8/84/Eye_makeup.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg
xref: MA:0000268
xref: MESH:A.01.456.505.420.504
xref: ncithesaurus:Eyelid
xref: OpenCyc:Mx4rvVi4m5wpEbGdrcN5Y29ycA
xref: SCTID:265782007
xref: VHOG:0000016
is_a: UBERON:1000021 ! skin of face
relationship: part_of UBERON:0000019 {source="multiple"} ! camera-type eye
[Term]
id: UBERON:0001712
name: upper eyelid
subset: uberon_slim
synonym: "palpebra superior" EXACT [FMA:54439, FMA:TA]
synonym: "superior eyelid" EXACT []
xref: EHDAA2:0002115
xref: EHDAA:9047
xref: EMAPA:17834
xref: FMA:54439
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg
xref: MA:0001267
xref: ncithesaurus:Upper_Eyelid
xref: OpenCyc:Mx4rvg4ohJwpEbGdrcN5Y29ycA
xref: SCTID:244499008
xref: VHOG:0000389
is_a: UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001713
name: lower eyelid
subset: uberon_slim
synonym: "inferior eyelid" EXACT []
synonym: "palpebra inferior" EXACT [FMA:54442, FMA:TA]
xref: AAO:0010349
xref: EHDAA2:0001015
xref: EHDAA:9041
xref: EMAPA:17831
xref: FMA:54442
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg
xref: MA:0001263
xref: ncithesaurus:Lower_Eyelid
xref: OpenCyc:Mx4rvW6GtJwpEbGdrcN5Y29ycA
xref: SCTID:362528002
xref: VHOG:0000388
xref: XAO:0000007
is_a: UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001714
name: cranial ganglion
alt_id: UBERON:0003213
def: "Ganglion of a cranial nerve[cjm]." [Wikipedia:Cranial_nerve_ganglion]
comment: Editor note: split out MA ter,. Note the MA term is part of the CNS. This needs to be checked w.r.t relationship between ganglia and the PNS, as the PNS and CNS are spatially disjoint. also meaning of MA term is not clear (appears to be union of nerve and ganglion, but MA 'cranial nerve' is unconnected)
subset: uberon_slim
subset: vertebrate_core
synonym: "cranial ganglia" RELATED []
synonym: "cranial ganglion" EXACT []
synonym: "cranial ganglion/nerve" EXACT []
synonym: "cranial nerve ganglion" EXACT []
synonym: "cranial neural ganglion" EXACT []
synonym: "cranial neural tree organ ganglion" EXACT [OBOL:automatic]
synonym: "ganglion of cranial nerve" EXACT [FMA:54502]
synonym: "ganglion of cranial neural tree organ" EXACT [OBOL:automatic]
synonym: "head ganglion" RELATED []
synonym: "presumptive cranial ganglia" RELATED [ZFA:0000013]
xref: BTO:0000106
xref: EFO:0000902
xref: EMAPA:16659
xref: FMA:54502
xref: MA:0000213
xref: MA:0000214
xref: MAT:0000200
xref: MIAA:0000200
xref: SCTID:244448001
xref: TAO:0000013
xref: VHOG:0000076
xref: XAO:0000027
xref: ZFA:0000013
property_value: UBPROP:0000001 "Ganglion which is located in the head.[TAO]" xsd:string
is_a: UBERON:0003338 ! ganglion of peripheral nervous system
relationship: part_of UBERON:0001785
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0001785 ! cranial nerve
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0001715
name: oculomotor nuclear complex
def: "The fibers of the oculomotor nerve arise from a nucleus in the midbrain, which lies in the gray substance of the floor of the cerebral aqueduct and extends in front of the aqueduct for a short distance into the floor of the third ventricle. From this nucleus the fibers pass forward through the tegmentum, the red nucleus, and the medial part of the substantia nigra, forming a series of curves with a lateral convexity, and emerge from the oculomotor sulcus on the medial side of the cerebral peduncle. The nucleus of the oculomotor nerve does not consist of a continuous column of cells, but is broken up into a number of smaller nuclei, which are arranged in two groups, anterior and posterior. Those of the posterior group are six in number, five of which are symmetrical on the two sides of the middle line, while the sixth is centrally placed and is common to the nerves of both sides. The anterior group consists of two nuclei, an antero-medial and an antero-lateral . The nucleus of the oculomotor nerve, considered from a physiological standpoint, can be subdivided into several smaller groups of cells, each group controlling a particular muscle. A nearby nucleus, the Edinger-Westphal nucleus, is responsible for the autonomic functions of the oculomotor nerve, including pupillary constriction and lens accommodation. [WP,unvetted]." [Wikipedia:Nucleus_of_oculomotor_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "motor nucleus III" RELATED []
synonym: "nIII" RELATED []
synonym: "nucleus nervi oculomotorii" EXACT [FMA:54510, FMA:TA]
synonym: "nucleus of oculomotor nerve" EXACT []
synonym: "nucleus of third cranial nerve" EXACT []
synonym: "oculomotor III nucleus" EXACT [MA:0001073]
synonym: "oculomotor nucleus" EXACT []
synonym: "third cranial nerve nucleus" EXACT []
xref: ABA:III
xref: BM:MB-III
xref: EFO:0002468
xref: EHDAA2:0004211
xref: EV:0100250
xref: FMA:54510
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png
xref: MA:0001073
xref: ncithesaurus:Oculomotor_Nucleus
xref: NIF_GrossAnatomy:birnlex_1240
xref: SCTID:362457000
xref: TAO:0000553
xref: VHOG:0001389
xref: ZFA:0000553
property_value: "spatially_disjoint_from" UBERON:0001944
property_value: "spatially_disjoint_from" UBERON:0001947
property_value: "spatially_disjoint_from" UBERON:0001966
property_value: "spatially_disjoint_from" UBERON:0002141
property_value: "spatially_disjoint_from" UBERON:0002438
property_value: "spatially_disjoint_from" UBERON:0002691
property_value: "spatially_disjoint_from" UBERON:0002696
property_value: "spatially_disjoint_from" UBERON:0002722
property_value: "spatially_disjoint_from" UBERON:0002995
property_value: "spatially_disjoint_from" UBERON:0003040
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0001716
name: secondary palate
def: "Partition that separates the nasal and oral cavities[GO]. The palate is divided into two parts, the anterior bony hard palate, and the posterior fleshy soft palate or velum. The maxillary nerve branch of the trigeminal nerve (V) supplies sensory innervation to the palate[WP]." [GO:0060021, Wikipedia:Palate, Wikipedia:Secondary_palate]
comment: Function notes: separates respiratory and oral passages. Taxon notes: present in mammals and some reptiles. A similar structure is found in crocodilians, but, in most other tetrapods, the oral and nasal cavities are not truly separate. The secondary palate is formed by bilateral medial extensions of maxillary processes. The extensions (palatine processes) meet at the midline, merging dorsally with nasal septum and rostrally with primary palate. The secondary palate (hard palate) separates nasal and oral cavities. Caudal extension of the secondary palate into the pharynx, forms a soft palate which divides the rostral pharynx into dorsal (nasopharynx) and ventral (oropharynx) chamber.
subset: uberon_slim
synonym: "definitive palate" EXACT [EMAPA:18948]
synonym: "oral roof" EXACT []
synonym: "palate" BROAD SENSU [EMAPA:18948, GO:0060021, MA:0002476]
synonym: "palatum" BROAD []
synonym: "palatum" RELATED LATIN [Wikipedia:Palate]
synonym: "palatum secundarium; palatum definitivum" RELATED LATIN [Wikipedia:Secondary_palate]
synonym: "roof of mouth" EXACT []
xref: BTO:0001779
xref: EMAPA:18948
xref: FMA:54549
xref: GAID:152
xref: galen:Palate
xref: http://upload.wikimedia.org/wikipedia/commons/3/31/Pig_snout_sagittal_cut.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg
xref: MA:0002476
xref: MESH:A.14.521.658
xref: ncithesaurus:Palate
xref: ncithesaurus:Secondary_Palate
xref: SCTID:181227004
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0007375 ! primary or secondary palate
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: adjacent_to UBERON:0000167 ! oral cavity
relationship: adjacent_to UBERON:0001707 ! nasal cavity
relationship: part_of UBERON:0000165 {source="FMA"} ! mouth
relationship: part_of UBERON:0001709 {source="EMAPA"} ! upper jaw region
[Term]
id: UBERON:0001717
name: spinal nucleus of trigeminal nerve
def: "The spinal trigeminal nucleus is a nucleus in the medulla that receives information about deep/crude touch, pain, and temperature from the ipsilateral face. The facial, glossopharyngeal, and vagus nerves also convey pain information from their areas to the spinal trigeminal nucleus. [WP,unvetted]." [Wikipedia:Spinal_trigeminal_nucleus]
subset: uberon_slim
synonym: "nucleus spinalis nervi trigemini" RELATED LATIN [Wikipedia:Spinal_trigeminal_nucleus]
synonym: "spinal nucleus of cranial nerve v" EXACT []
synonym: "spinal trigeminal nucleus" EXACT [GO:0021741]
synonym: "trigeminal nerve spinal tract nucleus" EXACT []
synonym: "trigeminal spinal nucleus" EXACT []
synonym: "trigeminal v spinal sensory nucleus" EXACT []
xref: BM:VSp
xref: FMA:54565
xref: GAID:605
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0001053
xref: MESH:A.08.186.211.132.931.920
xref: ncithesaurus:Nucleus_of_the_Spinal_Tract_of_the_Trigeminal_Nerve
xref: SCTID:369033006
xref: VHOG:0001357
is_a: UBERON:0004132 {source="MA"} ! trigeminal sensory nucleus
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0001896 {source="MA"} ! medulla oblongata
[Term]
id: UBERON:0001718
name: mesencephalic nucleus of trigeminal nerve
def: "The mesencephalic nucleus is involved with proprioception of the face, that is, the feeling of position of the muscles. Unlike many nuclei within the CNS, the mesencephalic nucleus contains no chemical synapses but are electrically coupled. Instead, neurons of this nucleus are pseudounipolar cells receiving proprioceptive information from the jaw, and sending projections to the motor trigeminal nucleus to mediate monosynaptic jaw reflexes. It is also the only structure in the CNS to contain the cell bodies of a primary afferent, which are usually contained within ganglia. [WP,unvetted]." [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve]
comment: Development notes: develops from NC in some species[UBERONREF:0000002] Not of NC origin[doi:10.1002/dvdy.1197]. AO notes: part of midbrain tegmentum in NIF and MA. the neurons of the mesencephalic trigeminal nucleus are the only centrally located primary sensory neurons in amniotes; all others are extramedullary[PMID:11747082]
subset: uberon_slim
subset: vertebrate_core
synonym: "Me5" BROAD [NIF_GrossAnatomy:birnlex_1010]
synonym: "mesencephalic nucleus" BROAD [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve]
synonym: "mesencephalic trigeminal nucleus" EXACT [GO:0021739]
synonym: "mesencephalic trigeminal V nucleus" EXACT []
synonym: "nucleus mesencephalicus nervi trigemini" RELATED LATIN [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve]
synonym: "nucleus of mesencephalic root of v" EXACT []
synonym: "trigeminal mesencephalic nucleus" EXACT []
synonym: "trigeminal nerve mesencepahlic nucleus" EXACT []
synonym: "trigeminal V mesencephalic nucleus" EXACT [MA:0001057]
xref: BM:Pons-5ME
xref: EV:0100252
xref: FMA:54568
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0001057
xref: NIF_GrossAnatomy:birnlex_1010
xref: SCTID:369032001
xref: TAO:0000312
xref: VHOG:0001354
xref: ZFA:0000312
is_a: UBERON:0004132 ! trigeminal sensory nucleus
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: part_of UBERON:0001891 {source="MA"} ! midbrain
relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum
[Term]
id: UBERON:0001719
name: nucleus ambiguus
def: "The nucleus ambiguus (literally 'ambiguous nucleus') is a region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted]." [Wikipedia:Nucleus_ambiguus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ambiguus nucleus" EXACT []
xref: ABA:AMB
xref: BM:Me-AMB
xref: EHDAA2:0004305
xref: EV:0100292
xref: FMA:54588
xref: http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png
xref: MA:0001050
xref: ncithesaurus:Nucleus_Ambiguus
xref: NIF_GrossAnatomy:birnlex_2650
xref: SCTID:280184006
property_value: "spatially_disjoint_from" UBERON:0002127
property_value: "spatially_disjoint_from" UBERON:0002154
property_value: "spatially_disjoint_from" UBERON:0002155
property_value: "spatially_disjoint_from" UBERON:0002559
property_value: "spatially_disjoint_from" UBERON:0002673
property_value: "spatially_disjoint_from" UBERON:0002870
property_value: "spatially_disjoint_from" UBERON:0002871
property_value: "spatially_disjoint_from" UBERON:0002872
property_value: "spatially_disjoint_from" UBERON:0002877
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: develops_from UBERON:0010126 {evidence="definitional"} ! future nucleus ambiguus
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0001720
name: cochlear nucleus
def: "The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]." [Wikipedia:Cochlear_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "cochlear nucleus of acoustic nerve" EXACT []
synonym: "cochlear nucleus of eighth cranial nerve" EXACT []
synonym: "cochlear VIII nucleus" EXACT [MA:0001012]
synonym: "nucleus of cochlear nerve" EXACT []
synonym: "statoacoustic (VIII) nucleus" EXACT []
synonym: "vestibulocochlear nucleus" RELATED []
xref: FMA:54603
xref: GAID:601
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png
xref: MA:0001012
xref: MESH:A.08.186.211.132.810.428.600.135
xref: ncithesaurus:Cochlear_Nucleus
xref: SCTID:362463009
xref: TAO:0002243
xref: ZFA:0001638
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0001721
name: inferior vestibular nucleus
def: "The inferior vestibular nucleus is the vestibular nucleus which lies near the fourth ventricle. [WP,unvetted]." [Wikipedia:Inferior_vestibular_nucleus]
subset: uberon_slim
synonym: "descending vestibular nucleus" EXACT [FMA:54608]
synonym: "nucleus vestibularis inferior" RELATED LATIN [Wikipedia:Inferior_vestibular_nucleus]
synonym: "spinal vestibular nucleus" EXACT [FMA:54608]
xref: ABA:SPIV
xref: BM:Me-VS-VSI
xref: BTO:0004369
xref: EV:0100258
xref: FMA:54608
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Gray700.png
xref: MA:0001054
xref: ncithesaurus:Spinal_Vestibular_Nucleus
xref: SCTID:280175006
property_value: "spatially_disjoint_from" UBERON:0001722
property_value: "spatially_disjoint_from" UBERON:0007227
property_value: "spatially_disjoint_from" UBERON:0007230
is_a: UBERON:0007228 ! vestibular nucleus
[Term]
id: UBERON:0001722
name: medial vestibular nucleus
def: "The medial vestibular nucleus is one of the vestibular nuclei. It is located in the medulla oblongata. Lateral vestibulo-spinal tract (lateral vestibular nucleus “Deiters”)- via ventrolateral medulla and spinal cord to ventral funiculus (lumbo-sacral segments). Ipsilaterally for posture Medial vestibulo-spinal tract (medial, lateral, inferior, vestibular nuclei), bilateral projection via descending medial longitudinal fasciculus to cervical segments. DESCENDING MLF. Bilaterally for head/neck/eye movements [WP,unvetted]." [Wikipedia:Medial_vestibular_nucleus]
subset: uberon_slim
synonym: "chief vestibular nucleus" EXACT [FMA:54611]
synonym: "dorsal vestibular nucleus" EXACT [FMA:54611]
synonym: "medial nucleus" RELATED [Wikipedia:Medial_vestibular_nucleus]
synonym: "nucleus of schwalbe" EXACT [FMA:54611]
synonym: "nucleus triangularis" EXACT [FMA:54611, FMA:TA]
synonym: "nucleus vestibularis medialis" RELATED LATIN [Wikipedia:Medial_vestibular_nucleus]
synonym: "principal vestibular nucleus" EXACT [FMA:54611]
synonym: "schwalbe's nucleus" EXACT [FMA:54611]
synonym: "triangular nucleus" EXACT [FMA:54611]
xref: ABA:MV
xref: BM:Me-VS-VSM
xref: BTO:0004371
xref: FMA:54611
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_horizontal_KB.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray700.png/200px-Gray700.png
xref: MA:0001048
xref: ncithesaurus:Medial_Vestibular_Nucleus
xref: SCTID:280174005
property_value: "spatially_disjoint_from" UBERON:0001721
property_value: "spatially_disjoint_from" UBERON:0007227
property_value: "spatially_disjoint_from" UBERON:0007230
is_a: UBERON:0007228 ! vestibular nucleus
[Term]
id: UBERON:0001723
name: tongue
def: "The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in many other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech[GO]." [GO:0043586, Wikipedia:Tongue]
comment: editor notes - in MA the tongue is part of the oral region, which in uberon is treated as the oral opening. consider revising oral opening - oral region equivalence. Taxon notes: Many species of fish have small folds at the base of their mouths that might informally be called tongues, but they lack a muscular structure like the true tongues found in most tetrapods. Development notes: The tongue has contributions from all pharyngeal arches which changes with time. The tongue initially begins as swelling rostral to foramen cecum, the median tongue bud.. tongue muscles derive from the somites - http://php.med.unsw.edu.au/embryology/index.php?title=Tongue_Development#Pharyngeal_Arch_Contributions
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "lingua" RELATED LATIN [Wikipedia:Tongue]
xref: AAO:0010360
xref: BTO:0001385
xref: EFO:0000833
xref: EHDAA2:0002062
xref: EHDAA:9144
xref: EMAPA:17185
xref: EMAPA:18870
xref: EV:0100058
xref: FMA:54640
xref: GAID:816
xref: http://upload.wikimedia.org/wikipedia/commons/a/a6/Tongue.agr.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Tongue.agr.jpg/200px-Tongue.agr.jpg
xref: MA:0000347
xref: MAT:0000040
xref: MESH:A.14.549.885
xref: MIAA:0000040
xref: ncithesaurus:Tongue
xref: OpenCyc:Mx4rvVjmJ5wpEbGdrcN5Y29ycA_53KXLq9EdqAAAACs6hnmQ
xref: SCTID:181226008
xref: TAO:0005333
xref: VHOG:0000419
xref: XAO:0000446
xref: ZFA:0005333
property_value: UBPROP:0000001 "Muscular organ in the floor of the mouth.[FEED]" xsd:string
is_a: UBERON:0000020 {source="GO"} ! sense organ
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: adjacent_to UBERON:0000166 ! oral opening
relationship: develops_from UBERON:0008814 ! pharyngeal system
relationship: develops_from UBERON:0010056 {evidence="definitional"} ! future tongue
relationship: has_developmental_contribution_from UBERON:0006260 {notes="anterior 2/3"} ! lingual swellings
relationship: has_developmental_contribution_from UBERON:0006756 {source="Wikipedia"} ! median lingual swelling
relationship: has_developmental_contribution_from UBERON:0006757 {source="Wikipedia"} ! lateral lingual swelling
relationship: part_of UBERON:0000165 {source="FMA", source="BTO"} ! mouth
relationship: part_of UBERON:0001033 {source="MA"} ! gustatory system
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0001724
name: sphenoidal sinus
def: "One of the paired paranasal sinuses, located in the body of the sphenoid bone and communicating with the highest meatus of the nasal cavity on the same side[MESH]. The sphenoidal sinuses (or sphenoid) contained within the body of the sphenoid vary in size and shape; owing to the lateral displacement of the intervening septum they are rarely symmetrical. The following are their average measurements: vertical height, 2.2 cm. ; transverse breadth, 2 cm. ; antero-posterior depth, 2.2 cm. [WP,unvetted]." [MESH:A.04.531.621.827, Wikipedia:Sphenoidal_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sinus sphenoidalis" RELATED LATIN [Wikipedia:Sphenoidal_sinus]
synonym: "sphenoid sinus" EXACT []
xref: FMA:54683
xref: GAID:359
xref: http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray856.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Gray856.png/200px-Gray856.png
xref: MA:0001795
xref: MESH:A.04.531.621.827
xref: ncithesaurus:Sphenoid_Sinus
xref: OpenCyc:Mx4rwEIoz5wpEbGdrcN5Y29ycA
xref: SCTID:181207000
is_a: UBERON:0001825 {source="MA"} ! paranasal sinus
[Term]
id: UBERON:0001725
name: cranial synchondrosis
def: "the cartilaginous joints of the skull; these include sphenoethmoidal synchondrosis, sphenooccipital synchondrosis, sphenopetrosal synchondrosis, petrooccipital synchondrosis, anterior intraoccipital synchondrosis and posterior intraoccipital synchondrosis." [http://www.medilexicon.com/medicaldictionary.php?t=87514]
xref: FMA:54816
xref: MA:0001502
xref: SCTID:314228003
is_a: UBERON:0002215 {source="FMA"} ! synchondrosis
relationship: part_of UBERON:0003129
intersection_of: UBERON:0002215 ! synchondrosis
intersection_of: part_of UBERON:0003129 ! skull
relationship: part_of UBERON:0003129 ! skull
[Term]
id: UBERON:0001726
name: papilla of tongue
synonym: "lingual papilla" EXACT []
synonym: "tongue papilla" EXACT []
xref: FMA:54819
xref: MA:0001593
xref: ncithesaurus:Papilla_of_the_Tongue
xref: NIF_GrossAnatomy:birnlex_4102
xref: SCTID:368728006
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001723 ! tongue
relationship: part_of UBERON:0009471 {source="FMA-modified"} ! dorsum of tongue
[Term]
id: UBERON:0001727
name: taste bud
def: "Taste buds are small structures on the upper surface of the tongue, soft palate, upper esophagus and epiglottis that provide information about the taste of food being eaten. These structures are involved in detecting the five elements of taste perception: salty, sour, bitter, sweet, and umami (or savory). Via small openings in the tongue epithelium, called taste pores, parts of the food dissolved in saliva come into contact with the taste receptors. These are located on top of the taste receptor cells that constitute the taste buds. The taste receptor cells send information detected by clusters of various receptors and ion channels to the gustatory areas of the brain via the seventh, ninth and tenth cranial nerves. The human tongue has about 10,000 taste buds. [WP,unvetted]." [Wikipedia:Taste_bud]
comment: Editor notes: todo - account for non-tongue taste buds. Development notes: arise by inductive interactions between epithelial cells and invading gustatory cells from chorda tympani (facial), glossophrayngeal and vagues nerves ISBN10:1607950324 (todo - request cell terms from CL) Taste buds form in greatest concentration on the dorsal surface of the tongue
subset: uberon_slim
subset: vertebrate_core
synonym: "caliculus gustatorius" RELATED LATIN [Wikipedia:Taste_bud]
synonym: "caliculus gustatorius" RELATED PLURAL [Wikipedia:Taste_bud]
synonym: "taste buds" RELATED PLURAL [Wikipedia:Taste_bud]
synonym: "taste-bud" RELATED [Wikipedia:Taste_bud]
synonym: "tastebud" EXACT [Wikipedia:Taste_bud]
synonym: "tastebuds" RELATED PLURAL [Wikipedia:Taste_bud]
xref: AAO:0010573
xref: BTO:0000989
xref: FMA:54825
xref: GAID:815
xref: http://upload.wikimedia.org/wikipedia/commons/5/5a/Gray1018.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Gray1018.png/200px-Gray1018.png
xref: MA:0001591
xref: MESH:A.08.800.550.700.120.800
xref: ncithesaurus:Taste_Bud
xref: NIF_GrossAnatomy:birnlex_4101
xref: OpenCyc:Mx4rvVjan5wpEbGdrcN5Y29ycA
xref: SCTID:362099006
xref: TAO:0001074
xref: VHOG:0000130
xref: XAO:0000445
xref: ZFA:0001074
property_value: UBPROP:0000001 "A chemoreceptive organ.[AAO]" xsd:string
is_a: UBERON:0000073 ! regional part of nervous system
is_a: UBERON:0004906 ! ectodermal gut
relationship: develops_from UBERON:0007690 {source="http://dev.biologists.org/content/128/22/4573.full"} ! early pharyngeal endoderm
relationship: part_of UBERON:0001033 {source="ZFA"} ! gustatory system
relationship: part_of UBERON:0001726 {source="Wikipedia"} ! papilla of tongue
relationship: part_of UBERON:0002926 {source="NIF"} ! gustatory epithelium
[Term]
id: UBERON:0001728
name: nasopharynx
def: "uppermost part of the pharynx. It extends from the base of the skull to the upper surface of the soft palate; it differs from the oral and laryngeal parts of the pharynx in that its cavity always remains patent (open)[WP]. In front it communicates through the choanae with the nasal cavities. On its lateral wall is the pharyngeal ostium of the auditory tube, somewhat triangular in shape, and bounded behind by a firm prominence, the torus tubarius or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane." [Wikipedia:Nasopharynx]
subset: uberon_slim
synonym: "epipharynx" RELATED [Wikipedia:Pharynx]
synonym: "nasal part of pharynx" EXACT []
synonym: "Nasenrachenraum" RELATED [BTO:0000662]
synonym: "pars nasalis pharyngis" RELATED LATIN [Wikipedia:Nasopharynx]
synonym: "rhinopharynx" EXACT []
xref: BTO:0000662
xref: EHDAA2:0001239
xref: EHDAA:7086
xref: EMAPA:17670
xref: EMAPA:25092
xref: EV:0100066
xref: FMA:54878
xref: GAID:339
xref: http://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Illu_pharynx.jpg/200px-Illu_pharynx.jpg
xref: MA:0000443
xref: MAT:0000447
xref: MESH:A.03.867.557
xref: ncithesaurus:Nasopharynx
xref: OpenCyc:Mx4rwUPoDJwpEbGdrcN5Y29ycA
xref: SCTID:181200003
xref: VHOG:0000375
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001557 ! upper respiratory tract
[Term]
id: UBERON:0001729
name: oropharynx
def: "The Oropharynx (oral part of the pharynx) reaches from the Uvula to the level of the hyoid bone. It opens anteriorly, through the isthmus faucium, into the mouth, while in its lateral wall, between the two palatine arches, is the palatine tonsil. [WP,unvetted]." [Wikipedia:Oropharynx]
subset: uberon_slim
synonym: "mesopharynx" RELATED [Wikipedia:Pharynx]
synonym: "oral part of pharynx" EXACT []
synonym: "pars oralis pharyngis" RELATED LATIN [Wikipedia:Oropharynx]
xref: EFO:0001976
xref: EHDAA2:0004082
xref: EMAPA:25094
xref: EV:0100067
xref: FMA:54879
xref: GAID:340
xref: http://upload.wikimedia.org/wikipedia/commons/4/4a/Illu_pharynx.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Illu_pharynx.jpg/200px-Illu_pharynx.jpg
xref: MA:0000351
xref: MAT:0000446
xref: MESH:A.03.867.603
xref: ncithesaurus:Oropharynx
xref: OpenCyc:Mx4rwACoxpwpEbGdrcN5Y29ycA
xref: SCTID:263376008
xref: VHOG:0000457
xref: VSAO:0000034
xref: XAO:0004048
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0010023 {source="ISBN10:0073040584-table13.1"} ! dorsal part of pharyngeal pouch 2
relationship: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0005409 ! gastrointestinal system
[Term]
id: UBERON:0001730
name: extrinsic ligament of larynx
synonym: "laryngeal extrinsic ligament" EXACT []
xref: FMA:54921
xref: MA:0001756
xref: SCTID:279550004
is_a: UBERON:0001743 ! ligament of larynx
[Term]
id: UBERON:0001731
name: cavity of pharynx
comment: Taxon notes: See notes for pharynx - as a grouping class this is probably too bad. We exclude WBbt:0005790 (pharyngeal lumen) because of the developmental relationship. Development notes: TOODO check
synonym: "cavitas pharyngis" RELATED [BTO:0002097]
synonym: "lumen of pharynx" EXACT []
synonym: "pharyngeal cavity" EXACT []
xref: AAO:0010435
xref: BTO:0002097
xref: EMAPA:18381
xref: EMAPA:18869
xref: FMA:54935
xref: SCTID:180543003
xref: XAO:0000105
is_a: UBERON:0002553 ! anatomical cavity
relationship: develops_from UBERON:0001041 {source="XAO"} ! foregut
relationship: part_of UBERON:0001007 {source="XAO"} ! digestive system
relationship: part_of UBERON:0006562 ! pharynx
[Term]
id: UBERON:0001732
name: pharyngeal tonsil
def: "Adenoids (or pharyngeal tonsils, or nasopharyngeal tonsils) are a mass of lymphoid tissue situated at the very back of the nose, in the roof of the nasopharynx, where the nose blends into the mouth. Normally, in children, they make a soft mound in the roof and posterior wall of the nasopharynx, just above and behind the uvula. [WP,unvetted]." [Wikipedia:Pharyngeal_tonsil]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adenoid" EXACT []
synonym: "nasopharyngeal tonsil" EXACT []
synonym: "Rachenmandel" RELATED [BTO:0000777]
synonym: "tonsil of luschka" EXACT []
synonym: "tonsilla pharyngea" RELATED LATIN [Wikipedia:Pharyngeal_tonsil]
xref: BTO:0000777
xref: EFO:0001401
xref: EV:0100054
xref: FMA:54970
xref: GAID:1288
xref: http://upload.wikimedia.org/wikipedia/commons/b/be/Gray994-adenoid.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray994-adenoid.png/200px-Gray994-adenoid.png
xref: MA:0000774
xref: MESH:A.15.382.520.604.084
xref: ncithesaurus:Pharyngeal_Tonsil
xref: SCTID:181199001
is_a: UBERON:0002372 ! tonsil
relationship: part_of UBERON:0001728 ! nasopharynx
[Term]
id: UBERON:0001733
name: soft palate
def: "soft tissue constituting the back of the roof of the mouth. The soft palate is distinguished from the hard palate at the front of the mouth in that it does not contain bone[WP]. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate[GO]." [GO:0060023, Wikipedia:Soft_palate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "muscular palate" RELATED [Wikipedia:Soft_palate]
synonym: "palatum molle, velum palatinum" RELATED LATIN [Wikipedia:Soft_palate]
synonym: "velum" RELATED [Wikipedia:Soft_palate]
xref: EMAPA:18949
xref: FMA:55021
xref: GAID:1284
xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Tonsils_diagram.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg
xref: MA:0002412
xref: MAT:0000039
xref: MESH:A.14.549.617.780
xref: MIAA:0000039
xref: ncithesaurus:Soft_Palate
xref: SCTID:245784004
property_value: UBPROP:0000001 "A muscular arch-shaped structure [is this an 'anatomical cluster�?] that is composed of the musculus uvuli and parts of tensor veli palatini, levator veli palatini, palatoglossus and palatopharyngeus and attaches to the hard palate and modulates the connections between the oral cavity and pharynx soft tissue arch .[FEED]" xsd:string
is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0000165 {source="FMA"} ! mouth
relationship: part_of UBERON:0001716 {source="MA"} ! secondary palate
[Term]
id: UBERON:0001734
name: uvula
def: "Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers. The uvula, hanging from the end of the soft palate, is responsible for the sound of snoring. Touching the uvula or the end of the soft palate evokes a strong gag reflex in most people." [Wikipedia:Palatine_uvula]
subset: uberon_slim
synonym: "palatine uvula" EXACT []
synonym: "uvula of palate" EXACT []
synonym: "uvula palatina" EXACT [FMA:55022, FMA:TA]
synonym: "uvula palatina" RELATED LATIN [Wikipedia:Palatine_uvula]
xref: EFO:0001386
xref: FMA:55022
xref: GAID:1285
xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Tonsils_diagram.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg
xref: MESH:A.14.549.617.780.729
xref: ncithesaurus:Uvula
xref: SCTID:362082005
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001733 ! soft palate
[Term]
id: UBERON:0001735
name: tonsillar ring
def: "lymphoid tissue ring located in the pharynx and to the back of the oral cavity. The ring consists of (from superior to inferior): Pharyngeal tonsil (also known as 'adenoids' when infected) Tubal tonsil (where Eustachian tube opens in the nasopharynx) Palatine tonsils (commonly called 'the tonsils' in the vernacular, less commonly termed 'faucial tonsils') Lingual tonsils Some animals, but not humans, have one or two additional tonsils: Soft palate tonsil Paraepiglottic tonsil[WP]." [Wikipedia:Waldeyer's_ring]
comment: see also FMA:79771 naso-pharyngeal lymphoid tissue
subset: uberon_slim
synonym: "anulus lymphoideus pharyngis" EXACT [FMA:55070, FMA:TA]
synonym: "oropharyngeal lymphoid tissue" EXACT []
synonym: "pharyngeal lymphatic ring" EXACT []
synonym: "pharyngeal lymphoid ring" EXACT []
synonym: "Waldeyer's ring" EXACT []
synonym: "Waldeyer's tonsillar ring" EXACT []
xref: FMA:55070
xref: MA:0000752
xref: ncithesaurus:Waldeyers_Tonsillar_Ring
xref: SCTID:56411004
is_a: UBERON:0001961 {source="MA"} ! mucosa-associated lymphoid tissue
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001042 ! chordate pharynx
[Term]
id: UBERON:0001736
name: submandibular gland
def: "The paired submandibular glands (submaxillary glands) are salivary glands located beneath the floor of the mouth. In humans, they account for 70% of the salivary volume and weigh about 15 grams. [WP,unvetted]." [Wikipedia:Submandibular_gland]
comment: TODO check SSG vs SG
subset: uberon_slim
synonym: "glandula submandibularis" RELATED LATIN [Wikipedia:Submandibular_gland]
synonym: "submandibular salivary gland" RELATED []
synonym: "submaxillary gland" RELATED []
xref: BTO:0001316
xref: EFO:0001387
xref: EMAPA:18812
xref: EV:0100061
xref: FMA:55093
xref: GAID:942
xref: http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg
xref: MA:0001589
xref: MESH:A.10.336.779.812
xref: ncithesaurus:Submandibular_Gland
xref: SCTID:181235001
xref: VHOG:0000364
is_a: UBERON:0001829 ! major salivary gland
relationship: develops_from UBERON:0006298 ! submandibular gland primordium
[Term]
id: UBERON:0001737
name: larynx
def: "Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]." [FMA:55097, Wikipedia:Larynx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000268
xref: BTO:0001208
xref: EFO:0000838
xref: EHDAA2:0004063
xref: EMAPA:18333
xref: EV:0100039
xref: FMA:55097
xref: GAID:108
xref: galen:Larynx
xref: http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg
xref: MA:0000414
xref: MAT:0000187
xref: MESH:A.04.329
xref: MIAA:0000187
xref: ncithesaurus:Larynx
xref: OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA
xref: SCTID:181212004
xref: VHOG:0001279
xref: XAO:0003081
property_value: UBPROP:0000001 "An anatomical cluster consisting of the epiglottus, the arytenoid cartilages, the thyroid cartilage, the cricoid cartilage and the muscles, membranes, and ligaments connecting them, and also of the mucosal covering these structures.[FEED]" xsd:string
property_value: UBPROP:0000001 "Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium
relationship: part_of UBERON:0001557 ! upper respiratory tract
[Term]
id: UBERON:0001738
name: thyroid cartilage
def: "The thyroid cartilage is the largest of the nine cartilages that make up the laryngeal skeleton, the cartilage structure in and around the trachea that contains the larynx. It is composed of two plate-like laminae that fuse on the anterior side of the cartilage to form a peak, called the laryngeal prominence. This prominence is often referred to as the 'pomus Adamus' or 'Adam's apple'. The laryngeal prominence is more prominent in adult male than female because of the difference in the size of the angle: 90° in male and 120° in female. The lip of the thyroid cartilage just superior to the laryngeal prominence is called the superior thyroid notch, while the notch inferior to the thyroid angle is called the inferior thyroid notch. Its posterior border is elongated both inferiorly and superiorly to form the superior horn of thyroid cartilage and inferior horn of thyroid cartilage. [WP,unvetted]." [Wikipedia:Thyroid_cartilage]
subset: uberon_slim
synonym: "cartilago thyroidea" RELATED LATIN [Wikipedia:Thyroid_cartilage]
synonym: "cartilago thyroidea" RELATED [Wikipedia:Thyroid_cartilage]
synonym: "laryngeal prominence" RELATED [Wikipedia:Thyroid_cartilage]
synonym: "pomus" RELATED [Wikipedia:Thyroid_cartilage]
synonym: "pomus adamus" RELATED [Wikipedia:Thyroid_cartilage]
xref: BTO:0003655
xref: EHDAA2:0002030
xref: EHDAA:9395
xref: EMAPA:18698
xref: FMA:55099
xref: GAID:112
xref: http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8a/Larynx_external_en.svg/200px-Larynx_external_en.svg.png
xref: MA:0001764
xref: MESH:A.02.165.507.870
xref: ncithesaurus:Thyroid_Cartilage
xref: SCTID:263483000
xref: VHOG:0001365
is_a: UBERON:0001739 ! laryngeal cartilage
relationship: develops_from UBERON:0010219 {source="EHDAA2"} ! thyroid pre-cartilage condensation
relationship: part_of UBERON:0010212 {source="EHDAA2"} ! laryngeal apparatus
[Term]
id: UBERON:0001739
name: laryngeal cartilage
def: "the cartilaginous structures that support the larynx." [MP:0002256]
synonym: "cartilage of larynx" EXACT [FMA:55108]
synonym: "cartilagines laryngeales" EXACT PLURAL []
synonym: "larynx cartilage" EXACT [VHOG:0001550]
xref: BTO:0003660
xref: EHDAA:8157
xref: EMAPA:18697
xref: FMA:55108
xref: GAID:107
xref: MA:0001758
xref: MESH:A.02.165.507
xref: ncithesaurus:Laryngeal_Cartilage
xref: SCTID:263482005
xref: VHOG:0001550
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0011004 ! pharyngeal arch cartilage
relationship: part_of UBERON:0001737
intersection_of: UBERON:0007844 ! cartilaginous element
intersection_of: part_of UBERON:0001737 ! larynx
relationship: develops_from UBERON:0010213 ! laryngeal pre-cartilage condensation
relationship: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0008895 ! splanchnocranium
relationship: part_of UBERON:0010212 ! laryngeal apparatus
[Term]
id: UBERON:0001740
name: arytenoid cartilage
def: "The arytenoid cartilages are a pair of small three-sided pyramids which form part of the larynx, to which the vocal cords are attached. Each is pyramidal in form, and has three surfaces, a base, and an apex. [WP,unvetted]." [Wikipedia:Arytenoid_cartilage]
subset: uberon_slim
synonym: "arytenoid" EXACT [EMAPA:18695]
synonym: "arytenoids" RELATED [Wikipedia:Arytenoid_cartilage]
synonym: "cartilagines arytenoidea" RELATED LATIN [Wikipedia:Arytenoid_cartilage]
synonym: "cartilago arytaenoidea" RELATED [AAO:0000674]
xref: AAO:0000674
xref: EMAPA:17977
xref: EMAPA:18695
xref: FMA:55109
xref: GAID:109
xref: http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray950.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray950.png/200px-Gray950.png
xref: MA:0001759
xref: MESH:A.02.165.507.083
xref: ncithesaurus:Arytenoid_Cartilage
xref: SCTID:264446005
property_value: UBPROP:0000001 "Paired, anteroposteriorly elongated cartilages that are associated with the vocal cords. These cartilages are medially separated and hemispherical, and their concave side faces ventromedially.[AAO]" xsd:string
is_a: UBERON:0001739 ! laryngeal cartilage
relationship: develops_from UBERON:0010220 {source="cjm"} ! arytenoid pre-cartilage condensation
[Term]
id: UBERON:0001741
name: corniculate cartilage
def: "The corniculate cartilages (cartilages of Santorini) are two small conical nodules consisting of yellow elastic cartilage, which articulate with the summits of the arytenoid cartilages and serve to prolong them posteriorly and medially. They are situated in the posterior parts of the aryepiglottic folds of mucous membrane, and are sometimes fused with the arytenoid cartilages. [WP,unvetted]." [Wikipedia:Corniculate_cartilages]
subset: uberon_slim
synonym: "cartilage of Santorini" EXACT []
synonym: "cartilagines corniculata" EXACT LATIN [Wikipedia:Corniculate_cartilage]
synonym: "Santorini's cartilage" EXACT []
xref: FMA:55110
xref: http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/56/Gray952.png/200px-Gray952.png
xref: MA:0001885
xref: ncithesaurus:Corniculate_Cartilage
xref: SCTID:278989005
is_a: UBERON:0001996 {source="MA"} ! elastic cartilage tissue
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003583 ! larynx connective tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0003117 ! pharyngeal arch 6
relationship: part_of UBERON:0001737 {source="FMA"} ! larynx
relationship: part_of UBERON:0008895 ! splanchnocranium
[Term]
id: UBERON:0001742
name: epiglottic cartilage
def: "the most superior of the laryngeal cartilages, which is found at the root of the tongue and folds back over the entrance to the larynx during swallowing." [MP:0002259]
comment: AO notes: laryngeal cartilage in MP
subset: uberon_slim
xref: FMA:55112
xref: MA:0001763
xref: ncithesaurus:Epiglottic_Cartilage
xref: SCTID:278990001
is_a: UBERON:0001739 ! laryngeal cartilage
is_a: UBERON:0001996 ! elastic cartilage tissue
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003583 ! larynx connective tissue
relationship: part_of UBERON:0000388 ! epiglottis
[Term]
id: UBERON:0001743
name: ligament of larynx
def: "A ligament that is part of a larynx [Obol]. " [OBOL:automatic]
synonym: "laryngeal ligament" EXACT []
synonym: "larynx ligament" EXACT []
xref: FMA:55131
xref: MA:0001755
xref: ncithesaurus:Laryngeal_Ligament
xref: SCTID:279508004
is_a: UBERON:0003583 ! larynx connective tissue
is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament
relationship: part_of UBERON:0001737
intersection_of: UBERON:0000211 ! ligament
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0001744
name: lymphoid tissue
def: "Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lymphatic tissue" EXACT []
synonym: "lymphocytic tissue" EXACT []
xref: BTO:0000753
xref: FMA:55220
xref: GAID:342
xref: galen:LymphoidTissue
xref: MA:0002436
xref: MESH:A.10.549
xref: ncithesaurus:Lymphoid_Tissue
xref: SCTID:181768009
is_a: UBERON:0000479 ! tissue
relationship: part_of UBERON:0002193 ! hemolymphoid system
relationship: part_of UBERON:0002465 ! lymphoid system
[Term]
id: UBERON:0001745
name: secondary nodular lymphoid tissue
def: "A lymphoid follicle that contains a germinal center." [CL:tm]
subset: uberon_slim
synonym: "peripheral lymphoid tissue" EXACT []
synonym: "secondary lymphoid nodule" EXACT []
synonym: "secondary lymphoid tissue" EXACT []
xref: FMA:55224
xref: GAID:946
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Keimzentrum.jpg/200px-Keimzentrum.jpg
is_a: UBERON:0000444 ! lymphoid follicle
relationship: has_part UBERON:0010754
intersection_of: UBERON:0000444 ! lymphoid follicle
intersection_of: has_part UBERON:0010754 ! germinal center
relationship: develops_from UBERON:0010422 ! primary nodular lymphoid tissue
relationship: has_part UBERON:0010754 ! germinal center
[Term]
id: UBERON:0001746
name: fibrous capsule of thyroid gland
comment: This class was created automatically from a combination of ontologies
synonym: "thyroid capsule" EXACT []
synonym: "thyroid gland capsule" EXACT []
xref: FMA:55513
xref: MA:0002675
xref: ncithesaurus:Thyroid_Gland_Capsule
xref: SCTID:176859009
is_a: UBERON:0003893 ! capsule
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0001747
name: parenchyma of thyroid gland
def: "A parenchyma that is part of a thyroid follicle [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "parenchyma of thyroid" EXACT [OBOL:automatic]
synonym: "parenchyma of thyroid follicle" EXACT [OBOL:automatic]
synonym: "parenchyma of thyroid gland follicle" EXACT [OBOL:automatic]
synonym: "thyroid follicle parenchyma" EXACT [OBOL:automatic]
synonym: "thyroid gland follicle parenchyma" EXACT [OBOL:automatic]
synonym: "thyroid gland parenchyma" EXACT []
synonym: "thyroid parenchyma" EXACT [OBOL:automatic]
xref: BTO:0004579
xref: FMA:55515
xref: MA:0000730
xref: SCTID:371402001
is_a: UBERON:0000353 ! parenchyma
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002046
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0002046 ! thyroid gland
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0001748
name: capsule of parathyroid gland
comment: This class was created automatically from a combination of ontologies
synonym: "parathyroid gland capsule" EXACT []
xref: FMA:55566
xref: MA:0002676
xref: ncithesaurus:Parathyroid_Gland_Capsule
is_a: UBERON:0003893 ! capsule
relationship: surrounds UBERON:0001132
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0001132 ! parathyroid gland
relationship: surrounds UBERON:0001132 ! parathyroid gland
[Term]
id: UBERON:0001749
name: parenchyma of parathyroid gland
def: "A parenchyma that is part of a parathyroid gland [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "parathyroid gland parenchyma" EXACT []
synonym: "parathyroid parenchyma" EXACT [OBOL:automatic]
synonym: "parenchyma of parathyroid" EXACT [OBOL:automatic]
xref: FMA:55569
xref: MA:0002677
is_a: UBERON:0000353 ! parenchyma
relationship: part_of UBERON:0001132
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001132 ! parathyroid gland
relationship: part_of UBERON:0001132 ! parathyroid gland
[Term]
id: UBERON:0001750
name: lacrimal apparatus
def: "The lacrimal apparatus is the physiologic system containing the orbital structures for tear production and drainage. It consists of: (a) the lacrimal gland, which secretes the tears, and its excretory ducts, which convey the fluid to the surface of the eye; (b) the lacrimal canaliculi, the lacrimal sac, and the nasolacrimal duct, by which the fluid is conveyed into the cavity of the nose. [WP,unvetted]." [Wikipedia:Lacrimal_apparatus]
comment: todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal. AO notes: this is an eye appendage in ncit, along with eyelid and eyebrow. in MA, part of eye surface part_of eye
subset: uberon_slim
synonym: "apparatus lacrimalis" RELATED LATIN [Wikipedia:Lacrimal_apparatus]
synonym: "nasolacrimal drainage system" RELATED [UBERON:cjm]
xref: FMA:55605
xref: GAID:901
xref: http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png
xref: MA:0000274
xref: MESH:A.09.371.463
xref: ncithesaurus:Lacrimal_Apparatus
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000019 {source="FMA", source="MA"} ! camera-type eye
relationship: part_of UBERON:0010409 {source="MA"} ! eye surface
[Term]
id: UBERON:0001751
name: dentine
def: "Collagen-rich odontogenic tissue characteristic of teeth and tooth-like skeletal elements (e.g., odontodes); mature dentine is mineralized and develops from predentine tissue; often (but not always) tubular and acellular." [VSAO:0000069, Wikipedia:Dentin]
comment: Dentine is found in the fossil record as early as the late Cambrian, in fish, where it may have had a role in electrochemical sensing of the environment as well as assisting in defense[WP]. Editors note: note the asserted dual is_a parentage, as dentine is both skeletal tissue and a substance
subset: uberon_slim
subset: vertebrate_core
synonym: "dentin" EXACT [MA:0002542]
synonym: "dentine of tooth" EXACT []
synonym: "predentin" NARROW [GO:0070468]
xref: BTO:0003453
xref: FMA:55628
xref: GAID:1272
xref: MA:0002542
xref: MESH:A.14.254.900.280
xref: ncithesaurus:Dentin
xref: SCTID:362112004
xref: TAO:0005143
xref: VHOG:0001589
xref: VSAO:0000069
xref: XAO:0004051
xref: ZFA:0005143
property_value: UBPROP:0000001 "Mineralized collagen containing substance that forms the tooth structure.[TAO]" xsd:string
is_a: UBERON:0001973 ! substance of tooth
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue
relationship: develops_from UBERON:0011587 {source="VSAO"} ! pre-dentine
[Term]
id: UBERON:0001752
name: enamel
def: "A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]." [Wikipedia:Enamel_organ, ZFIN:curator]
comment: AO notes: part_of tooth enamel organ in MA. Editor notes: current classification under substance of tooth may be turned into taxon GCI (e.g. sharks have enamel in dermal denticles)
subset: uberon_slim
subset: vertebrate_core
synonym: "enamel of tooth" EXACT []
synonym: "enamel tissue" EXACT [VSAO:curator]
synonym: "enameloid" RELATED []
synonym: "tooth enamel" EXACT []
xref: BTO:0001844
xref: FMA:55629
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Enamelorgan11-17-05.jpg
xref: MA:0002543
xref: MESH:A.14.254.900.255
xref: ncithesaurus:Enamel
xref: SCTID:362113009
xref: VSAO:0000065
xref: XAO:0004198
property_value: UBPROP:0000001 "Skeletal tissue that consists of an avascular, noncollagenous, hypermineralized matrix that is deposited by ameloblasts that are excluded from the matrix. Enamel develops from organic pre-enamel tissue that is replaced by a largely inorganic matrix.[VSAO]" xsd:string
is_a: UBERON:0001973 {source="FMA"} ! substance of tooth
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue
relationship: develops_from UBERON:0011588 {source="VSAO"} ! pre-enamel
[Term]
id: UBERON:0001753
name: cementum
def: "A bone-like mineralized tissue secreted by cementoblasts on the surface of root dentine or, in some animals, crown enamel[Diekwisch 2001]. Substance of tooth produced by cementoblasts; surrounds the dentine of the root of the tooth[FMA]. a specialized calcified substance covering the root of a tooth. Cementum is excreted by cells called cementoblasts within the root of the tooth and is thickest at the root apex. Its coloration is yellowish and it is softer than enamel and dentin due to being less mineralized[WP]." [Wikipedia:Cementum]
comment: Cementum, the supporting tissue that anchors mammalian and crocodylian teeth into their sockets, differs among species and can have features of dentine, of bone, and of calcified cartilage, as well as unique features. Cementum is deposited by cementoblasts onto existing dentine. As in bone and dentine, cementoblasts produce an organic matrix, the main constituent of which is collagen type I (Bosshardt, 2005), but cementum, dentine, and bone also share a number of important noncollagenous matrix components such as osteopontin, osteocalcin, bone sialoprotein, a2-HS- glycoprotein, dentine matrix protein, dentine sialoprotein, and den- tine phosphoprotein (McKee et al., 1996; Bosshardt, 2005). it has been argued that in all rodents and ruminants, cementum is a form of calcified cartilage[H&W]
synonym: "cement" EXACT []
synonym: "cement of tooth" EXACT []
synonym: "cementum" EXACT []
synonym: "cementum of tooth" EXACT []
xref: BTO:0002525
xref: FMA:55630
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg
xref: MA:0002541
xref: MESH:A.14.254.646.267
xref: ncithesaurus:Cementum
xref: SCTID:362114003
xref: VSAO:0000062
xref: XAO:0004196
property_value: UBPROP:0000001 "Odontoid tissue that is deposited by cementoblasts onto dentine tissue and functions to attach teeth, odontodes and other odontogenic derivatives to bone tissue and the integument.[VSAO]" xsd:string
is_a: UBERON:0001973 ! substance of tooth
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue
relationship: has_developmental_contribution_from UBERON:0008969 {source="PMID:19767574", source="Wikipedia"} ! dental follicle
[Term]
id: UBERON:0001754
name: dental pulp
def: "the part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]." [Wikipedia:Dental_pulp]
subset: uberon_slim
subset: vertebrate_core
synonym: "dental pulp cell" RELATED [BTO:0000339]
synonym: "pulp of tooth" EXACT []
synonym: "tooth pulp" EXACT [ZFA:0005141]
xref: BTO:0000339
xref: FMA:55631
xref: GAID:1270
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png
xref: MA:0001599
xref: MESH:A.14.254.900.260
xref: ncithesaurus:Dental_Pulp
xref: SCTID:362110007
xref: TAO:0005141
xref: VHOG:0001469
xref: ZFA:0005141
property_value: UBPROP:0000001 "Material in the center of the dentine of the mature tooth. In secondary teeth the pulp contains blood vessels and odontoblast.[TAO]" xsd:string
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0001763 {source="ZFA"} ! odontogenic papilla
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0001755
name: distal part of styloid process of temporal bone
def: "A segment in the hyoidean arch between the epihyal and tympanohyal[biology-online]. The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms[ZFA]." [http://www.biology-online.org/dictionary/Stylohyal]
comment: TODO - check
subset: vertebrate_core
synonym: "distal part of styloid process" EXACT [FMA:56472]
synonym: "stylohyal" BROAD [FMA:56472]
xref: FMA:56472
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0003960 ! styloid process of temporal bone
[Term]
id: UBERON:0001756
name: middle ear
def: "The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]." [GO:0042474, Wikipedia:Middle_ear]
subset: uberon_slim
synonym: "auris media" RELATED LATIN [Wikipedia:Middle_ear]
synonym: "auris media" RELATED [BTO:0002099]
xref: AAO:0011065
xref: BTO:0002099
xref: EHDAA2:0001181
xref: EHDAA:5693
xref: EMAPA:17000
xref: EV:0100357
xref: FMA:56513
xref: GAID:165
xref: MA:0000253
xref: MAT:0000146
xref: MESH:A.09.246.397
xref: MIAA:0000146
xref: ncithesaurus:Middle_Ear
xref: NIF_GrossAnatomy:birnlex_1695
xref: OpenCyc:Mx4rvbw1j5wpEbGdrcN5Y29ycA
xref: SCTID:181185000
xref: VHOG:0000312
xref: XAO:0000191
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0001757
name: pinna
def: "Visible part of the ear that resides outside of the head. The purpose of the pinna is to collect sound. It does so by acting as a funnel, amplifying the sound and directing it to the ear canal. While reflecting from the pinna, sound also goes through a filtering process which adds directional information to the sound (see sound localization, head-related transfer function, pinna notch). The filtering effect of the human pinna preferentially selects sounds in the frequency range of human speech. In various species, the pinna can also signal mood and radiate heat." [Wikipedia:Pinna_(anatomy)]
subset: uberon_slim
synonym: "auricle" EXACT []
synonym: "auricle of ear" EXACT []
synonym: "auricle of external ear" EXACT []
synonym: "auricula" EXACT [Wikipedia:Auricula]
synonym: "auricula (auris externa)" EXACT []
synonym: "pinna of ear" EXACT []
synonym: "pinnae" RELATED PLURAL []
xref: EHDAA2:0001467
xref: EMAPA:17589
xref: EV:0100355
xref: FMA:56580
xref: galen:Auricle
xref: MA:0000259
xref: ncithesaurus:Auricle
xref: OpenCyc:Mx4rvs_VC5wpEbGdrcN5Y29ycA
xref: SCTID:421159007
xref: VHOG:0000460
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001691 ! external ear
[Term]
id: UBERON:0001758
name: periodontium
def: "The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, Wikipedia:Periodontium]
comment: note FMA treats periodontium and periodontal ligament as the same
synonym: "paradentium" RELATED [MESH:A.14.254.646]
synonym: "periodontal ligament" RELATED INCONSISTENT [FMA:56665]
synonym: "periodontal membrane" RELATED [MA:0002467]
synonym: "tooth supporting structure" RELATED [MESH:A.14.254.646]
xref: BTO:0001021
xref: FMA:56665
xref: GAID:216
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg
xref: MESH:A.14.254.646
xref: ncithesaurus:Periodontium
is_a: UBERON:0000479 {source="cjm"} ! tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: adjacent_to UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0003672 {source="cjm"} ! dentition
[Term]
id: UBERON:0001759
name: vagus nerve
def: "Cranial nerve that branches into the lateral (to body sense organs) and the intestino-accessorial (to the skin, muscles of shoulder, hyoid, larynx, gut, lungs, and heart)." [ISBN:0471209627, Wikipedia:Vagus_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "CN-X" RELATED []
synonym: "cranial nerve X" RELATED []
synonym: "nervus vagus" RELATED [BTO:0003472]
synonym: "nervus vagus" RELATED LATIN [Wikipedia:Vagus_nerve]
synonym: "nervus vagus [x]" EXACT [FMA:5731, FMA:TA]
synonym: "pneuomgastric nerve" RELATED [BTO:0003472]
synonym: "tenth cranial nerve" EXACT []
synonym: "vagal nerve" RELATED []
synonym: "vagus" EXACT []
synonym: "Vagus nerve [X]" EXACT []
synonym: "vagus nerve tree" EXACT []
synonym: "vagus X nerve" EXACT [MA:0001106]
xref: AAO:0010475
xref: BTO:0003472
xref: EFO:0002549
xref: FMA:5731
xref: GAID:721
xref: galen:VagusNerve
xref: http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png
xref: MA:0001106
xref: MESH:A.08.800.050.050.925
xref: ncithesaurus:Vagus_Nerve
xref: NIF_GrossAnatomy:birnlex_801
xref: OpenCyc:Mx4rviHk2ZwpEbGdrcN5Y29ycA
xref: SCTID:362466001
xref: TAO:0000453
xref: VHOG:0000737
xref: XAO:0003097
xref: ZFA:0000453
property_value: UBPROP:0000001 "Nerve consisting of branchiomotor and visceral efferent fibers which branch and innervate the smooth muscles and glands of the heart, lungs, esophagus, and stomach as well as some throat muscles. Sensory fibers supply mucosa of the mouth and pharynx.[AAO]" xsd:string
is_a: UBERON:0001785 ! cranial nerve
relationship: develops_from_part_of UBERON:0005073 {source="GO"} ! preganglionic parasympathetic nervous system
relationship: has_developmental_contribution_from UBERON:0002342 {notes="sensory", source="Wikipedia"} ! neural crest
relationship: has_developmental_contribution_from UBERON:0005239 {notes="motor", source="Wikipedia"} ! basal plate metencephalon
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0001760
name: frontal sinus
def: "Sinuses are mucosa-lined airspaces within the bones of the face and skull. The frontal sinuses, situated behind the superciliary arches, are absent at birth, but are generally fairly well developed between the seventh and eighth years, only reaching their full size after puberty. The frontal bone is membranous at birth and there is rarely more than a recess until the bone tissue starts to ossify about age two. Consequently this structure does not show on radiographs before that time. Frontal sinuses are rarely symmetrical and the septum between them frequently deviates to one or other side of the middle line. Sinus development begins in the womb, but only the maxillary and ethmoid sinuses are present at birth. Approximately 5% of people have absent frontal sinuses. Their average measurements are as follows: height 28 mm, breadth 24 mm, depth 20 mm, creating a space of 6-7 ml. Each opens into the anterior part of the corresponding middle meatus of the nose through the frontonasal duct which traverses the anterior part of the labyrinth of the ethmoid. These structures then open into the hiatus semilunaris in the middle meatus. The mucous membrane in this sinus is innervated by the supraorbital nerve, which carries the postganglionic parasympathetic nerve fibers for mucous secretion from the facial nerve and supplied by the supraorbital artery and anterior ethmoidal artery. Through its copious mucus production, the sinus is an essential part of the immune defense/air filtration carried out by the nose. Nasal and sinal mucosae are ciliated and move mucus to the choanae and finally to the stomach. The thick upper layers of nasal mucus trap bacteria and small particles in tissue abundantly provided with immune cells, antibodies, and antibacterial proteins. The layers beneath are thinner and provide a substrate in which the cilia are able to beat and move the upper layer with its debris through the ostia toward the choanae. [WP,unvetted]." [Wikipedia:Frontal_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cavity of frontal bone" EXACT [FMA:57417]
synonym: "sinus frontales" RELATED LATIN [Wikipedia:Frontal_sinus]
xref: FMA:57417
xref: GAID:357
xref: http://upload.wikimedia.org/wikipedia/commons/f/fb/Nnh_front.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png
xref: MA:0001793
xref: MESH:A.04.531.621.387
xref: ncithesaurus:Frontal_Sinus
xref: OpenCyc:Mx4rvqMUR5wpEbGdrcN5Y29ycA
xref: SCTID:181205008
is_a: UBERON:0001825 {source="MA"} ! paranasal sinus
[Term]
id: UBERON:0001761
name: foramen caecum of thyroid
subset: uberon_slim
synonym: "foramen caecum" BROAD [MA:0000725]
xref: EHDAA2:0000550
xref: EHDAA:2150
xref: EHDAA:2977
xref: EMAPA:17069
xref: EMAPA:18828
xref: MA:0000725
xref: VHOG:0000826
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0001762
name: nasal concha
def: "In anatomy, a nasal concha (or turbinate) is a long, narrow and curled bone shelf (shaped like an elongated sea-shell) which protrudes into the breathing passage of the nose. Turbinate bone refers to any of the scrolled spongy bones of the nasal passages in vertebrates. In humans, the turbinates divide the nasal airway into three groove-like air passages –and are responsible for forcing inhaled air to flow in a steady, regular pattern around the largest possible surface of cilia and climate controlling tissue. [WP,unvetted]." [Wikipedia:Nasal_concha]
comment: Note that FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here // Turbinals are only ossified in birds and derived synapsids.
subset: uberon_slim
synonym: "concha" RELATED [EMAPA:25093]
synonym: "conchae nasales" RELATED LATIN [Wikipedia:Nasal_concha]
synonym: "nasal turbinate" EXACT []
synonym: "turbinal" EXACT [palaeos.com/vertebrates/bones/braincase/ethmoid.html]
synonym: "turbinate" EXACT []
synonym: "turbinate bone" EXACT [EMAPA:25093]
xref: EHDAA2:0004101
xref: EMAPA:25093
xref: GAID:224
xref: http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray153.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray153.png/200px-Gray153.png
xref: MA:0000286
xref: MESH:A.02.835.232.781.324.948
xref: ncithesaurus:Nasal_Turbinate
xref: OpenCyc:Mx4rv07bVJwpEbGdrcN5Y29ycA
xref: SCTID:361931007
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
disjoint_from: UBERON:0006203 ! conchal part of pinna
relationship: part_of UBERON:0001707 ! nasal cavity
relationship: part_of UBERON:0011241 {source="Kardong"} ! ethmoid region
[Term]
id: UBERON:0001763
name: odontogenic papilla
def: "Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina[ZFA]. The dental papilla is a condensation of ectomesenchymal cells called odontoblasts, seen in histologic sections of a developing tooth. It lies below a cellular aggregation known as the enamel organ. The dental papilla appears after 8-10 weeks intra uteral life. The dental papilla gives rise to the dentin and pulp of a tooth. The enamel organ, dental papilla, and dental follicle together forms one unit, called the tooth germ. This is of importance because all the tissues of a tooth and its supporting structures form from these distinct cellular aggregations." [Wikipedia:Dental_papilla, ZFA:0005140]
subset: uberon_slim
subset: vertebrate_core
synonym: "dentinal papilla" RELATED [BTO:0001839]
synonym: "dermal papilla" RELATED INCONSISTENT [ISBN10:0073040584]
synonym: "papilla dentis" RELATED LATIN [Wikipedia:Dental_papilla]
synonym: "pharyngeal tooth mesenchyme" NARROW SENSU [ZFA:0005140]
synonym: "tooth mesenchyme" RELATED [ZFA:0005140]
xref: BTO:0001839
xref: FMA:57662
xref: GAID:1277
xref: http://upload.wikimedia.org/wikipedia/commons/2/22/Gray1011.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray1011.png/200px-Gray1011.png
xref: MA:0001598
xref: MESH:A.14.254.900.720.250
xref: TAO:0005140
xref: VHOG:0001465
xref: VSAO:0000025
xref: XAO:0004045
xref: ZFA:0005140
property_value: UBPROP:0000001 "Cell condensation that is a well-defined population of densely organized mesenchymal cells that aggregates adjacent to an epithelium.[VSAO]" xsd:string
property_value: UBPROP:0000001 "Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina.[TAO]" xsd:string
is_a: UBERON:0003856 ! odontogenic mesenchyme
is_a: UBERON:0005856 {source="JB"} ! developing mesenchymal condensation
relationship: develops_from UBERON:0003856 {source="ZFA"} ! odontogenic mesenchyme
relationship: part_of UBERON:0005176 {source="BTO", notes="suspect"} ! tooth enamel organ
relationship: surrounded_by UBERON:0001828 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! gingiva
[Term]
id: UBERON:0001764
name: maxillary sinus
def: "The maxillary sinus (or Antrum of Highmore) is the largest of the paranasal sinuses, and is pyramidal in shape. [WP,unvetted]." [Wikipedia:Maxillary_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "antrum of highmore" EXACT []
synonym: "sinus maxilliaris" RELATED LATIN [Wikipedia:Maxillary_sinus]
xref: FMA:57715
xref: GAID:358
xref: http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray1199.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray1199.png/200px-Gray1199.png
xref: MA:0001794
xref: MESH:A.04.531.621.578
xref: ncithesaurus:Maxillary_Sinus
xref: OpenCyc:Mx4rvp2ZWJwpEbGdrcN5Y29ycA
xref: SCTID:181204007
is_a: UBERON:0001825 ! paranasal sinus
[Term]
id: UBERON:0001765
name: mammary duct
def: "Epithelial tube that transports milk[GO]." [GO:0060603, Wikipedia:Lactiferous_duct]
comment: This structure regresses in most males
subset: uberon_slim
synonym: "ductus lactiferi" RELATED [BTO:0002845]
synonym: "ductus lactiferi" RELATED LATIN [Wikipedia:Lactiferous_duct]
synonym: "galactophorous tubule" RELATED [BTO:0002845]
synonym: "lactiferous duct" EXACT [FMA:58006]
synonym: "lactiferous gland duct" EXACT [Obol:automatic]
synonym: "lactiferous tubule" RELATED [BTO:0002845]
synonym: "mammary gland duct" EXACT []
xref: BTO:0002845
xref: FMA:58006
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_breast_anatomy.jpg
xref: MA:0000791
xref: ncithesaurus:Lactiferous_Duct
xref: SCTID:361719004
is_a: UBERON:0000058 ! duct
is_a: UBERON:0003244 ! epithelium of mammary gland
is_a: UBERON:0003914 ! epithelial tube
relationship: part_of UBERON:0001911
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001911 ! mammary gland
relationship: channel_for UBERON:0001913 ! milk
relationship: channels_into UBERON:0002030 ! nipple
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0001766
name: anterior chamber of eyeball
def: "the fluid-filled space inside the eye between the iris and the cornea's innermost surface, the endothelium.[1] Aqueous humor is the fluid that fills the anterior chamber. Hyphema and glaucoma are two main pathologies in this area. In hyphema, blood fills the anterior chamber. In glaucoma, blockage of the canal of Schlemm prevents the normal outflow of aqueous humor, resulting in accumulation of fluid, increased intraocular pressure, and eventually blindness." [Wikipedia:Anterior_chamber_of_eyeball]
comment: This class was created automatically from a combination of ontologies
synonym: "anterior chamber" EXACT [HP:0000593, MP:0010709]
synonym: "anterior chamber of eye" EXACT []
synonym: "camera anterior" EXACT []
synonym: "camera anterior bulbi oculi" RELATED LATIN [Wikipedia:Anterior_chamber_of_eyeball]
synonym: "eye anterior chamber" EXACT []
xref: BTO:0002084
xref: EHDAA2:0000129
xref: EHDAA:9033
xref: EMAPA:18231
xref: FMA:58078
xref: GAID:889
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0000262
xref: MESH:A.09.371.060.067
xref: ncithesaurus:Anterior_Chamber_of_the_Eye
xref: SCTID:181160009
xref: VHOG:0001431
is_a: UBERON:0006311 ! chamber of eyeball
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
[Term]
id: UBERON:0001767
name: posterior chamber of eyeball
def: "a narrow chink behind the peripheral part of the iris of the lens, and in front of the suspensory ligament of the lens and the ciliary processes the Posterior Chamber consists of small space directly posterior of the Iris but anterior to the lens." [Wikipedia:Posterior_chamber_of_eyeball]
comment: The posterior chamber should not be confused with vitreous chamber.
synonym: "c. posterior bulbi" RELATED LATIN [Wikipedia:Posterior_chamber_of_eyeball]
synonym: "camera posterior" EXACT []
synonym: "eye posterior chamber" EXACT []
synonym: "posterior chamber of eye" EXACT []
xref: BTO:0002086
xref: FMA:58080
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png
xref: MA:0002460
xref: ncithesaurus:Posterior_Chamber_of_the_Eye
xref: OpenCyc:Mx4rvnYe8pwpEbGdrcN5Y29ycA
xref: SCTID:362504004
is_a: UBERON:0006311 ! chamber of eyeball
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
[Term]
id: UBERON:0001768
name: vascular layer of eyeball
def: "pigmented middle of the three concentric layers that make up an eye[WP]. The pigmented vascular coat of the eyeball, consisting of the CHOROID; CILIARY BODY; and IRIS, which are continuous with each other. (Cline et al., Dictionary of Visual Science, 4th ed)[GAID]." [Wikipedia:Uvea]
comment: TODO - check child terms, isa vs partof
subset: uberon_slim
synonym: "tunica vasculosa bulbi" RELATED LATIN [Wikipedia:Uvea]
synonym: "tunica vasculosa of eyeball" EXACT []
synonym: "uvea" EXACT []
synonym: "uveal tract" EXACT []
xref: FMA:58103
xref: GAID:912
xref: http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Gray869.png/200px-Gray869.png
xref: MA:0002480
xref: MESH:A.09.371.894
xref: ncithesaurus:Uvea
xref: SCTID:280648000
is_a: UBERON:0002203 ! vasculature of eye
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
[Term]
id: UBERON:0001769
name: iris
def: "a membrane in the eye, responsible for controlling the amount of light reaching the retina. The iris consists of pigmented fibrovascular tissue known as a stroma. It is the most forward portion of the eye and the only one seen on superficial inspection. The stroma connects a sphincter muscle (sphincter pupillae), which contracts the pupil, and a set of dilator muscles (dilator pupillae) which open it. The back surface is covered by a heavily pigmented epithelial layer two cells thick (the iris pigment epithelium), but the front surface has no epithelium. The high pigment content blocks light from passing through the iris and restricts it to the pupil. The outer edge of the iris, known as the root, is attached to the sclera and the anterior ciliary body. The iris and ciliary body together are known as the anterior uvea. Just in front of the root of the iris is the region through which the aqueous humour constantly drains out of the eye, with the result that diseases of the iris often have important effects on intraocular pressure, and indirectly on vision. Depending on the amount of light, the iris makes the pupil larger or smaller." [Wikipedia:Iris_(anatomy)]
comment: AO notes: MA and FMA differ regarding isa vs partof to vascular layer. Taxon notes: The avian iris and ciliary body undergoes a transition from smooth-to-striated muscle during embryonic development - dx.doi.org/10.1006/dbio.1998.9019
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior uvea" RELATED []
xref: AAO:0010347
xref: BTO:0000653
xref: EMAPA:19154
xref: EV:0100345
xref: FMA:58235
xref: GAID:917
xref: MA:0000273
xref: MESH:A.09.371.894.513
xref: ncithesaurus:Iris
xref: OpenCyc:Mx4rvVjbppwpEbGdrcN5Y29ycA
xref: SCTID:181164000
xref: TAO:0001238
xref: VHOG:0000101
xref: XAO:0000185
xref: ZFA:0001238
is_a: UBERON:0001768 {source="FMA"} ! vascular layer of eyeball
relationship: develops_from UBERON:0004128 {source="XAO"} ! optic vesicle
relationship: part_of UBERON:0001801 {source="ZFA"} ! anterior segment of eyeball
[Term]
id: UBERON:0001770
name: lacrimal canaliculus
def: "The lacrimal canaliculi, also known as the lacrimal canals or lacrimal ducts, are the small channels in each eyelid that commence at minute orifices, termed puncta lacrimalia, on the summits of the papillae lacrimales, seen on the margins of the lids at the lateral extremity of the lacus lacrimalis. The superior duct, the smaller and shorter of the two, at first ascends, and then bends at an acute angle, and passes medialward and downward to the lacrimal sac. The inferior duct at first descends, and then runs almost horizontally to the lacrimal sac. At the angles they are dilated into ampullæ. Microscopically, they are lined by nonkeratinizing stratified squamous epithelium surrounded by fibrous tissue. Outside the latter is a layer of striped muscle, continuous with the lacrimal part of the Orbicularis oculi; at the base of each lacrimal papilla the muscular fibers are circularly arranged and form a kind of sphincter. [WP,unvetted]." [Wikipedia:Lacrimal_canaliculi]
comment: todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal
subset: uberon_slim
synonym: "canaliculus lacrimalis" RELATED LATIN [Wikipedia:Lacrimal_canaliculi]
xref: FMA:58245
xref: MA:0001294
xref: ncithesaurus:Lacrimal_Canaliculus
xref: SCTID:263348000
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001850 ! lacrimal duct
[Term]
id: UBERON:0001771
name: pupil
def: "sphere that is located in the center of the iris of the eye and that controls the amount of light that enters the eye." [Wikipedia:Pupil]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0010351
xref: FMA:58252
xref: GAID:918
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Eye_iris.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Eye_iris.jpg/200px-Eye_iris.jpg
xref: MA:0001292
xref: MESH:A.09.371.894.513.780
xref: ncithesaurus:Pupil
xref: OpenCyc:Mx4rvViBr5wpEbGdrcN5Y29ycA
xref: SCTID:35146001
xref: TAO:0001283
xref: VHOG:0000116
xref: XAO:0000283
xref: ZFA:0001283
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0001772
name: corneal epithelium
def: "The corneal epithelium (epithelium corneæ anterior layer) is made up of epithelial tissue and covers the front of the cornea. It consists of several layers of cells. The cells of the deepest layer are columnar; then follow two or three layers of polyhedral cells, the majority of which are prickle cells similar to those found in the stratum mucosum of the cuticle. Lastly, there are three or four layers of squamous cells, with flattened nuclei. [WP,unvetted]." [Wikipedia:Corneal_epithelium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior corneal epithelium" EXACT []
synonym: "anterior endothelium of cornea" RELATED [BTO:0000287]
synonym: "cornea epithelial tissue" EXACT [OBOL:automatic]
synonym: "cornea epithelium" EXACT [OBOL:automatic]
synonym: "e. anterius corneae" RELATED LATIN [Wikipedia:Corneal_epithelium]
synonym: "endothelium anterius corneae" RELATED [BTO:0000287]
synonym: "endothelium camerae anterioris bulbi" RELATED [BTO:0000287]
synonym: "endothelium corneale" RELATED [BTO:0000287]
synonym: "epithelial tissue of cornea" EXACT [OBOL:automatic]
synonym: "epithelium anterius (cornea)" EXACT []
synonym: "epithelium anterius corneae" EXACT [FMA:58263, FMA:TA]
synonym: "epithelium of cornea" EXACT []
synonym: "epithelium posterius corneae" RELATED [BTO:0000287]
synonym: "external epithelium of cornea" EXACT []
xref: BTO:0000287
xref: EFO:0001917
xref: EHDAA2:0000319
xref: EMAPA:17162
xref: FMA:58263
xref: GAID:895
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray871.png/200px-Gray871.png
xref: MA:0001243
xref: MESH:A.09.371.060.217.325
xref: ncithesaurus:Corneal_Epithelium
xref: SCTID:15775008
xref: TAO:0002187
xref: ZFA:0001683
property_value: UBPROP:0000001 "Portion of tissue comprised of four to six layers of nonkeratinized, stratified squamous cells and represents approximately 60% of the thickness of the cornea.[TAO]" xsd:string
is_a: UBERON:0000488 ! atypical epithelium
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0000964
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000964 ! cornea
relationship: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0001773
name: sclera
def: "The sclera, also known as the white part of the eye, is the opaque (usually white, though certain animals, such as horses and lizards, can have black sclera), fibrous, protective, outer layer of the eye containing collagen and elastic fiber. It is derived from the neural crest. In children, it is thinner and shows some of the underlying pigment, appearing slightly blue. In the elderly, however, fatty deposits on the sclera can make it appear slightly yellow. The sclera forms the posterior five sixths of the connective tissue coat of the globe. It is continuous with the dura mater and the cornea, and maintains the shape of the globe, offering resistance to internal and external forces, and provides an attachment for the extraocular muscle insertions. The sclera is perforated by plenty of nerves and vessels passing through the posterior scleral foramen, the hole that is formed by the optic nerve. At the optic disk the outer two-thirds of the sclera continues with the dura mater (outer coat of the brain) via the dural sheath of the optic nerve. The inner third joins with some choroidal tissue to form a plate (lamina cribrosa) across the optic nerve with perforations through which the optic fibers (fasciculi). The thickness of the sclera varies from 1mm at the posterior pole to 0.3 mm just behind the rectus muscle insertions. The sclera's blood vessels are mainly on the surface, and together with the conjunctiva (which lies on top) This is a thin layer covering the sclera. Along with the vessels of the conjunctiva, those of the sclera renders the inflamed eye bright red. [WP,unvetted]." [Wikipedia:Sclera]
comment: Development notes: Majority derives from NC that surrounds optic cup of neurectoderm; a small temporal portion develops from the mesoderm that contributes to striated extra-ocular muscles and vascular endothelia[Rada&Johnson]. Taxon notes: Multi-tissue structure that composes the opaque fibrous outer layer of the eye[ZFA] Seko et al demonstrate chondrogenic potential doi:10.1371/journal.pone.0003709 and identify this as connective tissue. Disease notes: implicated in rheumatoid arthritis. Structure notes: continuous with the dura mater and the cornea; The sclera forms the posterior five-sixths of the connective tissue coat of the globe. Taxon notes: in fish, reptiles and monotremes the connective tissue of the sclera is skeletal
subset: uberon_slim
subset: vertebrate_core
synonym: "scleral capsule" RELATED []
xref: AAO:0010354
xref: BTO:0001606
xref: EMAPA:19027
xref: EV:0100342
xref: FMA:58269
xref: GAID:911
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0000280
xref: MESH:A.09.371.784
xref: ncithesaurus:Sclera
xref: OpenCyc:Mx4rv7yR55wpEbGdrcN5Y29ycA
xref: sclera
xref: SCTID:181163006
xref: VHOG:0001274
xref: XAO:0000183
xref: ZFA:0005563
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0000926 {source="cjm"} ! mesoderm
relationship: has_developmental_contribution_from UBERON:0002342 {source="Wikipedia"} ! neural crest
relationship: part_of UBERON:0010230 ! eyeball of camera-type eye
[Term]
id: UBERON:0001774
name: muscle of trunk
def: "Muscle organ which is a part of the trunk. Examples: external intercostal muscle, external oblique, levator ani." []
comment: TODO - check muscle organ vs musculature
subset: uberon_slim
subset: vertebrate_core
synonym: "body musculature" EXACT [ZFA:0000473]
synonym: "muscle organ of torso" EXACT [OBOL:automatic]
synonym: "muscle organ of trunk" EXACT [OBOL:automatic]
synonym: "torso muscle organ" EXACT [OBOL:automatic]
synonym: "trunk muscle" EXACT []
synonym: "trunk muscle organ" EXACT [OBOL:automatic]
synonym: "trunk musculature" EXACT []
xref: AAO:0000611
xref: EFO:0003531
xref: FMA:58274
xref: MA:0000514
xref: TAO:0000473
xref: XAO:0003230
xref: ZFA:0000473
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0005177 ! trunk organ
relationship: part_of UBERON:0002100
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0001775
name: ciliary body
def: "circumferential tissue inside the eye composed of the ciliary muscle and ciliary processes." [Wikipedia:Ciliary_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior uvea" RELATED []
synonym: "corpus ciliare" RELATED [Wikipedia:Ciliary_body]
synonym: "corpus ciliare" RELATED LATIN [Wikipedia:Ciliary_body]
xref: AAO:0010341
xref: BTO:0000260
xref: EMAPA:19065
xref: EV:0100346
xref: FMA:58295
xref: GAID:916
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0000264
xref: MESH:A.09.371.894.280
xref: ncithesaurus:Ciliary_Body
xref: SCTID:263340007
xref: VHOG:0000102
xref: XAO:0000186
is_a: UBERON:0001768 ! vascular layer of eyeball
[Term]
id: UBERON:0001776
name: choroid
def: "vascular layer containing connective tissue, of the eye lying between the retina and the sclera. In humans its thickness is about 0.5 mm. The choroid provides oxygen and nourishment to the outer layers of the retina [1]. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]." [Wikipedia:Choroid]
comment: check choroid vs choroid layer
subset: uberon_slim
subset: vertebrate_core
synonym: "chorioid" RELATED [BTO:0001829]
synonym: "choroid coat" EXACT [Wikipedia:Choroid]
synonym: "choroidea" EXACT [Wikipedia:Choroid]
synonym: "choroidea" RELATED LATIN [Wikipedia:Choroid]
synonym: "eye choroid" EXACT [VHOG:0001568]
synonym: "optic choroid" EXACT [ZFA:0005229]
synonym: "posterior uvea" EXACT [Wikipedia:Uvea#Regions]
xref: BTO:0001829
xref: EMAPA:19077
xref: EMAPA:25087
xref: EV:0100347
xref: FMA:58298
xref: GAID:913
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0000263
xref: MESH:A.09.371.894.223
xref: ncithesaurus:Choroid
xref: SCTID:181172003
xref: TAO:0005229
xref: VHOG:0001568
xref: ZFA:0005229
is_a: UBERON:0001768 ! vascular layer of eyeball
relationship: adjacent_to UBERON:0000966 ! retina
relationship: adjacent_to UBERON:0001773 ! sclera
relationship: part_of UBERON:0001768 ! vascular layer of eyeball
[Term]
id: UBERON:0001777
name: substantia propria of cornea
def: "The substantia propria (or stroma of cornea) is fibrous, tough, unyielding, and perfectly transparent. It is composed of about 200 flattened lamellæ (plates of collagen fibrils), superimposed one on another. They are each about 1.5-2.5 micrometres in thickness. These fibrils run at different angles between the limbi. Fibres of the layers frequently interweave, the anterior lamellæ interweaving more than posterior lamellæ. The fibres of each lamella are parallel with one another, but at right angles to those of adjacent lamellæ. The lamellæ are produced by keratocytes (corneal corpuscles), which occupy about 10% of the substantia propria. These lamellæ are made up of bundles of modified connective tissue, the fibres of which are directly continuous with those of the sclera. More collagen fibres run in a temporal-nasal direction than run in the superior-inferior direction. This is often ignored by corneal transplant surgeons, leading to poor corneal mechanical strength in corneal transplant patients. [WP,unvetted]." [Wikipedia:Corneal_stroma]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "cornea stroma" EXACT []
synonym: "corneal stroma" EXACT []
synonym: "stroma of cornea" EXACT []
synonym: "substantia propria" RELATED []
xref: EFO:0002514
xref: EMAPA:17602
xref: FMA:58306
xref: GAID:893
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray871.png/200px-Gray871.png
xref: MA:0001245
xref: MESH:A.09.371.060.217.228
xref: ncithesaurus:Corneal_Stroma
xref: SCTID:362511000
xref: TAO:0002189
xref: ZFA:0001685
property_value: UBPROP:0000001 "Portion of tissue that is located basal to Bowman's layer and distal to Descemet's membrane and is comprised largely of connective tissue.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass tissue (CARO:0000043) CHANGED TO: develops_from tissue (UBERON:0000479)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass tissue (CARO:0000043) CHANGED TO: has_developmental_contribution_from tissue (UBERON:0000479)[TAO]" xsd:string
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000964
intersection_of: UBERON:0003891 ! stroma
intersection_of: part_of UBERON:0000964 ! cornea
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0001778
name: ciliary epithelium
def: "A double layer covering the ciliary body that produces aqueous humor." [Wikipedia:Ciliary_body#Ciliary_epithelium]
synonym: "ciliary body epithelium" EXACT [FMA:58464]
synonym: "epithelium of ciliary body" EXACT [FMA:58464]
xref: BTO:0001770
xref: FMA:58464
xref: MA:0001238
xref: ncithesaurus:Ciliary_Epithelium
xref: SCTID:280870004
is_a: UBERON:0000488 {source="FMA"} ! atypical epithelium
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001775
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001775 ! ciliary body
relationship: part_of UBERON:0001775 ! ciliary body
relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body
relationship: secretes UBERON:0001796 {source="Wikipedia"} ! aqueous humor of eyeball
[Term]
id: UBERON:0001779
name: iris stroma
def: "the delicate vascular connective tissue that lies between the anterior surface of the iris and the pars iridica retinae." [http://www.drugs.com/dict/stroma-of-iris.html, Wikipedia:Iris_stroma]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "iridial stroma" EXACT []
synonym: "stroma of iris" EXACT []
xref: FMA:58526
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png
xref: MA:0002777
xref: SCTID:280882008
xref: ZFA:0005569
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0001780
name: spinal nerve
def: "Neural tree (organ) which is directly continuous with the spinal cord. Examples: Fifth cervical spinal nerve, third lumbar spinal nerve." [Wikipedia:Spinal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "backbone nerve" EXACT [OBOL:automatic]
synonym: "nerve of backbone" EXACT [OBOL:automatic]
synonym: "nerve of spinal column" EXACT [OBOL:automatic]
synonym: "nerve of spine" EXACT [OBOL:automatic]
synonym: "nerve of vertebral column" EXACT [OBOL:automatic]
synonym: "nervi spinales" RELATED LATIN [Wikipedia:Spinal_nerve]
synonym: "spinal column nerve" EXACT [OBOL:automatic]
synonym: "spinal nerve tree" EXACT []
synonym: "spine nerve" EXACT [OBOL:automatic]
synonym: "vertebral column nerve" EXACT [OBOL:automatic]
xref: AAO:0011101
xref: BTO:0000870
xref: EHDAA2:0001898
xref: EMAPA:16989
xref: FMA:5858
xref: GAID:841
xref: http://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg
xref: MA:0000233
xref: MESH:A.08.800.800.720
xref: ncithesaurus:Spinal_Nerve
xref: OpenCyc:Mx4rwK_iFJwpEbGdrcN5Y29ycA
xref: SCTID:361099009
xref: VHOG:0000824
xref: XAO:0003101
is_a: UBERON:0001021 ! nerve
relationship: continuous_with UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0001781
name: layer of retina
def: "any of the layers that make up the retina[MP]." [MP:0003727]
comment: Note that MA does not treat internal/external limiting memranes as layers - these are classified as laminae. Here we follow other ontologies in grouping with other layers. MA also treats retinal pigment epithelium and neural retina epithelium as distinct from the layers. We follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers - these are also classified as layers, giving us over the usual 10 layers
subset: vertebrate_core
synonym: "retina layer" EXACT []
synonym: "retina neuronal layer" EXACT [MP:0006069]
synonym: "retinal layer" EXACT []
synonym: "retinal neuronal layer" EXACT [MP:0006069]
xref: AAO:0010353
xref: FMA:58617
xref: MA:0001318
xref: MA:0001319
xref: ncithesaurus:Retina_Layer
xref: SCTID:280657006
xref: XAO:0000266
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0001782
name: pigmented layer of retina
def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup[ZFA]. the pigmented cell layer just outside the neurosensory retina that nourishes retinal visual cells, and is firmly attached to the underlying choroid and overlying retinal visual cells[WP]." [Wikipedia:Retinal_pigment_epithelium, ZFIN:curator]
comment: editor note - we follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers
subset: uberon_slim
subset: vertebrate_core
synonym: "epithelium, retinal pigment" RELATED [BTO:0001177]
synonym: "outer pigmented layer of retina" EXACT []
synonym: "pigment epithelium of retina" EXACT []
synonym: "pigmented epithelium" RELATED []
synonym: "pigmented retina" RELATED []
synonym: "pigmented retinal epithelium" EXACT []
synonym: "PRE" RELATED []
synonym: "retinal pigment epithelium" EXACT [MP:0005201, Wikipedia:Retinal_pigment_epithelium]
synonym: "retinal pigmented epithelium" EXACT [ZFA:0000144]
synonym: "retinal pigmented epithelium" EXACT []
synonym: "RPE" RELATED []
synonym: "stratum pigmentosa retinae, p. pigmentosa retinae" RELATED LATIN [Wikipedia:Retinal_pigment_epithelium]
synonym: "stratum pigmentosum (retina)" EXACT []
xref: AAO:0011096
xref: BTO:0001177
xref: EHDAA2:0001465
xref: EHDAA:4765
xref: EMAPA:17172
xref: FMA:58627
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png
xref: MA:0000279
xref: ncithesaurus:Retinal_Pigment_Epithelium
xref: SCTID:280662007
xref: TAO:0000144
xref: VHOG:0000536
xref: XAO:0003217
xref: ZFA:0000144
property_value: UBPROP:0000001 "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000001 "The monolayer of pigmented epithelium covering the neural retina.[AAO]" xsd:string
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0005424
intersection_of: UBERON:0001781 ! layer of retina
intersection_of: develops_from UBERON:0005424 ! presumptive retinal pigmented epithelium
relationship: adjacent_to UBERON:0001787 {source="Wikipedia"} ! photoreceptor layer of retina
relationship: adjacent_to UBERON:0003902 ! retinal neural layer
relationship: develops_from UBERON:0005424 ! presumptive retinal pigmented epithelium
[Term]
id: UBERON:0001783
name: optic disc
def: "The optic disc or optic nerve head is the location where ganglion cell axons exit the eye to form the optic nerve. There are no light sensitive rods or cones to respond to a light stimulus at this point. This causes a break in the visual field called 'the blind spot' or the 'physiological blind spot'. The optic nerve head in a normal human eye carries from 1 to 1.2 million neurons from the eye towards the brain. [WP,unvetted]." [Wikipedia:Optic_disc]
subset: uberon_slim
synonym: "optic disk" EXACT [MESH:A.08.800.800.120.680.660]
synonym: "optic disk" RELATED [Wikipedia:Optic_disc]
synonym: "optic nerve disc" RELATED [Wikipedia:Optic_disc]
synonym: "optic nerve head" RELATED [Wikipedia:Optic_disc]
synonym: "optic papilla" RELATED [Wikipedia:Optic_disc]
synonym: "physiologic blind spot" RELATED [Wikipedia:Optic_disc]
synonym: "physiologic blind spot of mariotte" RELATED [Wikipedia:Optic_disc]
xref: EFO:0001974
xref: EHDAA2:0001307
xref: EHDAA:9077
xref: EMAPA:18238
xref: EMAPA:25088
xref: FMA:58634
xref: http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray879.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Gray879.png/200px-Gray879.png
xref: MA:0000278
xref: MESH:A.08.800.800.120.680.660
xref: ncithesaurus:Optic_Disc
xref: SCTID:362518006
xref: VHOG:0000551
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: continuous_with UBERON:0000941 ! cranial nerve II
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0001784
name: macula lutea
comment: Obsoleted as it accidentally grouped macula and macula lutea
is_obsolete: true
consider: UBERON:0000053
consider: UBERON:0000054
[Term]
id: UBERON:0001785
name: cranial nerve
def: "Cranial nerves are nerves that emerge directly from the brain, in contrast to spinal nerves, which emerge from segments of the spinal cord. In humans, there are traditionally twelve pairs of cranial nerves. Only the first and the second pair emerge from the cerebrum; the remaining ten pairs emerge from the brainstem[WP]." [Wikipedia:Cranial_nerve]
comment: Editors note: classified as neural tree organ, not nerve in FMA. CN II poses a challenge here as it is not strictly a nerve, yet is expected to be classified under CN. Note EMAPA subdivides nerve into CNS nerve and PNS nerve, with *all* cranial nerves classified as CNS nerves.
subset: uberon_slim
subset: vertebrate_core
synonym: "cranial nerves" RELATED []
synonym: "cranial neural tree organ" EXACT []
synonym: "nervus cranialis" RELATED LATIN [Wikipedia:Cranial_nerve]
xref: AAO:0000108
xref: BTO:0001104
xref: EHDAA2:0000323
xref: EMAPA:17263
xref: EMAPA:17264
xref: FMA:5865
xref: GAID:802
xref: http://upload.wikimedia.org/wikipedia/commons/1/18/Brain_human_normal_inferior_view_with_labels_en-2.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Brain_human_normal_inferior_view_with_labels_en.svg/200px-Brain_human_normal_inferior_view_with_labels_en.svg.png
xref: MA:0000215
xref: MESH:A.08.800.800.120
xref: ncithesaurus:Cranial_Nerve
xref: NIF_GrossAnatomy:birnlex_1623
xref: OpenCyc:Mx4rvWvJVpwpEbGdrcN5Y29ycA
xref: SCTID:244447006
xref: TAO:0000641
xref: VHOG:0000279
xref: XAO:0003089
xref: ZFA:0000641
property_value: UBPROP:0000001 "Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves.[TAO]" xsd:string
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: continuous_with UBERON:0000955 ! brain
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
[Term]
id: UBERON:0001786
name: fovea centralis
def: "a part of the eye, located in the center of the macula region of the retina. [1] [2] The fovea is responsible for sharp central vision (also called foveal vision). The fovea is surrounded by the parafovea belt, and the perifovea outer region:[2] the parafovea is the intermediate belt where the ganglion cell layer is composed of more than five rows of cells; as well as the highest density of cones; the perifovea is the outermost region where the ganglion cell layer contains two to four rows of cells, and is where visual acuity is below the optimum. The perifovea contains an even more diminished density of cones, having 12 per 100 micrometres versus 50 per 100 micrometres in the most central fovea. This, in turn, is surrounded by a larger peripheral area that delivers highly compressed information of low resolution. Approximately 50% of the nerve fibers in the optic nerve carry information from the fovea, while the other 50% carry information from the rest of the retina. The parafovea extends to a distance of 1¼ mm from the central fovea, and the perifovea is found 2¾ mm away from the fovea centralis[WP]." [Wikipedia:Fovea_centralis_in_macula]
comment: As an anatomical term, there are several foveae around the body, including in the head of the femur.(WP)
subset: uberon_slim
synonym: "centre of macula" EXACT [NIF_GrossAnatomy:birnlex_2543]
synonym: "fovea" EXACT []
synonym: "fovea centralis in macula" EXACT [Wikipedia:Fovea_centralis_in_macula]
xref: EV:0100350
xref: FMA:58658
xref: GAID:910
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0001307
xref: MESH:A.09.371.729.522.436
xref: ncithesaurus:Fovea_Centralis
xref: NIF_GrossAnatomy:birnlex_2543
xref: SCTID:264479005
xref: VHOG:0001572
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000053 ! macula lutea
[Term]
id: UBERON:0001787
name: photoreceptor layer of retina
def: "The layer within the retina where the photoreceptor cell receptor segments reside." [Wikipedia:Layer_of_rods_and_cones, ZFA:0000143]
comment: we follow MA and ZFA in subdividing this into inner and outer segments
subset: uberon_slim
subset: vertebrate_core
synonym: "layer of rods and cones" RELATED []
synonym: "retina photoreceptor layer" EXACT []
synonym: "retinal photoreceptor layer" EXACT [ZFA:0000143]
synonym: "stratum segmentorum externorum et internorum (retina)" EXACT []
xref: FMA:58680
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png
xref: MA:0001308
xref: ncithesaurus:Layer_of_the_Rods_and_Cones
xref: TAO:0000143
xref: VHOG:0001165
xref: XAO:0003215
xref: ZFA:0000143
is_a: UBERON:0003902 ! retinal neural layer
relationship: adjacent_to UBERON:0001788 ! outer limiting layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001788
name: outer limiting layer of retina
def: "the row of jucntional complexes between the plasma membranes of rod segments and the Muller glia cells; this barrier separates the layer of inner and outer segments of the rods and cones from the outer nuclear layer and forms a blood-retina barrier[MP]." [MP:0010236]
subset: vertebrate_core
synonym: "external limiting lamina of retina" EXACT []
synonym: "external limiting membrane" EXACT [ZFA:0001331]
synonym: "external limiting membrane of retina" EXACT []
synonym: "outer limiting membrane" EXACT [XAO:0003224]
synonym: "outer limiting membrane of retina" EXACT []
synonym: "retina external limiting lamina" EXACT []
synonym: "retina outer limiting membrane" EXACT [MP:0010236]
synonym: "stratum limitans externum (retina)" EXACT []
xref: FMA:58683
xref: MA:0001309
xref: ncithesaurus:Outer_Limiting_Membrane
xref: SCTID:280676008
xref: TAO:0001331
xref: XAO:0003224
xref: ZFA:0001331
is_a: UBERON:0007619 ! limiting membrane of retina
relationship: adjacent_to UBERON:0001789 ! outer nuclear layer of retina
[Term]
id: UBERON:0001789
name: outer nuclear layer of retina
def: "The layer within the retina where the photoreceptor cell bodies reside." [ZFA:0001464]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "ONL" NARROW []
synonym: "outer nuclear layer" BROAD []
synonym: "retina outer nuclear layer" EXACT []
synonym: "retinal outer nuclear layer" EXACT []
synonym: "stratum nucleare externum (retina)" EXACT []
xref: EMAPA:19157
xref: FMA:58684
xref: MA:0001315
xref: ncithesaurus:Outer_Nuclear_Layer_of_Retina
xref: SCTID:280678009
xref: TAO:0001464
xref: VHOG:0001170
xref: XAO:0003219
xref: ZFA:0001464
is_a: UBERON:0003902 ! retinal neural layer
relationship: adjacent_to UBERON:0001790 ! outer plexiform layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001790
name: outer plexiform layer of retina
def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]." [ZFA:0001330]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "external plexiform layer" EXACT [BTO:0003174]
synonym: "OPL" NARROW []
synonym: "outer plexiform layer" EXACT [BTO:0003174]
synonym: "retina outer plexiform layer" EXACT []
synonym: "retinal outer plexiform layer" EXACT []
synonym: "stratum plexiforme externum" EXACT []
xref: BTO:0003174
xref: FMA:58685
xref: MA:0001316
xref: ncithesaurus:Outer_Plexiform_Layer
xref: NIF_GrossAnatomy:nlx_anat_20090403
xref: SCTID:280684007
xref: TAO:0001330
xref: VHOG:0001171
xref: XAO:0003218
xref: ZFA:0001330
property_value: UBPROP:0000001 "The layer within the retina where the bipolar cells synapse with the photoreceptor cells.[TAO]" xsd:string
is_a: UBERON:0003902 ! retinal neural layer
relationship: adjacent_to UBERON:0001791 ! inner nuclear layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001791
name: inner nuclear layer of retina
def: "The layer of the retina composed of the cell bodies of bipolar cells, horizontal cells, and some of the cell bodies of amacrine cells." [BTO:0003176]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "INL" NARROW []
synonym: "inner nuclear layer" EXACT []
synonym: "intermediate cell layer" EXACT [ZFA:0000119]
synonym: "retina inner nuclear layer" EXACT []
synonym: "retinal inner nuclear layer" EXACT []
synonym: "stratum nucleare internum" EXACT []
xref: BTO:0003176
xref: EMAPA:19155
xref: FMA:58686
xref: MA:0001311
xref: ncithesaurus:Inner_Nuclear_Layer
xref: NIF_GrossAnatomy:nlx_anat_1005031
xref: SCTID:362520009
xref: TAO:0000119
xref: VHOG:0001167
xref: XAO:0003221
xref: ZFA:0000119
is_a: UBERON:0003902 ! retinal neural layer
relationship: adjacent_to UBERON:0001795 ! inner plexiform layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001792
name: ganglionic layer of retina
def: "a layer of the retina that consists of retinal ganglion cells[WP]. innermost nuclear layer of the retina, which contains neurons that project axons through the optic nerve to the brain." [Wikipedia:Ganglion_cell_layer]
comment: Check exact synonyms in ZFA / XAO
subset: uberon_slim
subset: vertebrate_core
synonym: "ganglion cell layer" EXACT [FMA:58687, ZFA:0000024]
synonym: "ganglionic cell layer of retina" EXACT [FMA:58687]
synonym: "GCL layer" EXACT []
synonym: "retina ganglion cell layer" EXACT []
synonym: "retina ganglion layer" EXACT []
synonym: "retinal ganglion cell layer" EXACT []
synonym: "retinal ganglion layer" EXACT [MP:0008510]
synonym: "RGC layer" EXACT []
synonym: "stratum ganglionicum (retina)" EXACT [FMA:58687]
synonym: "stratum ganglionicum retinae" RELATED LATIN [Wikipedia:Ganglion_cell_layer]
xref: BTO:0003398
xref: FMA:58687
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png
xref: MA:0001310
xref: ncithesaurus:Ganglion_Cell_Layer
xref: NIF_GrossAnatomy:nlx_anat_1005030
xref: SCTID:280670002
xref: TAO:0000024
xref: VHOG:0001166
xref: XAO:0003223
xref: ZFA:0000024
is_a: UBERON:0003902 ! retinal neural layer
relationship: adjacent_to UBERON:0001793 ! nerve fiber layer of retina
relationship: part_of UBERON:0003902 {source="FMA"} ! retinal neural layer
[Term]
id: UBERON:0001793
name: nerve fiber layer of retina
alt_id: UBERON:0005888
def: "Fiber layer adjacent the retinal ganglion cell layer which is comprised of their axons as they traverse to the optic nerve[ZFA]. The retinal nerve fiber layer (nerve fiber layer, stratum opticum, RNFL) is formed by the expansion of the fibers of the optic nerve; it is thickest near the porus opticus, gradually diminishing toward the ora serrata. As the nerve fibers pass through the lamina cribrosa sclerae they lose their medullary sheaths and are continued onward through the choroid and retina as simple axis-cylinders. When they reach the internal surface of the retina they radiate from their point of entrance over this surface grouped in bundles, and in many places arranged in plexuses. Most of the fibers are centripetal, and are the direct continuations of the axis-cylinder processes of the cells of the ganglionic layer, but a few of them are centrifugal and ramify in the inner plexiform and inner nuclear layers, where they end in enlarged extremities." [Wikipedia:Nervous_system_fiber_layer, ZFA:0001619]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "layer of nerve fibers of retina" EXACT []
synonym: "layer of nerve fibres of retina" EXACT []
synonym: "retina nerve fiber layer" EXACT []
synonym: "stratum neurofibrarum (retina)" EXACT []
synonym: "stratum neurofibrarum retinae" EXACT [FMA:58688, FMA:TA]
synonym: "stratum neurofibrum retinae" RELATED LATIN [Wikipedia:Nerve_fiber_layer]
synonym: "stratum opticum of retina" EXACT []
xref: EMAPA:18591
xref: FMA:58688
xref: MA:0001314
xref: SCTID:280671003
xref: TAO:0002212
xref: VHOG:0001169
xref: XAO:0003220
xref: ZFA:0001619
is_a: UBERON:0003902 ! retinal neural layer
relationship: adjacent_to UBERON:0001794 ! inner limiting layer of retina
relationship: overlaps UBERON:0000941 ! cranial nerve II
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001794
name: inner limiting layer of retina
def: "the row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]." [MP:0010235]
comment: TODO - check frog/fish
subset: vertebrate_core
synonym: "inner limiting membrane" EXACT [XAO:0003222]
synonym: "inner limiting membrane of retina" EXACT []
synonym: "internal limiting lamina of retina" EXACT []
synonym: "internal limiting membrane of retina" EXACT []
synonym: "retina inner limiting membrane" EXACT [MP:0010235]
synonym: "retina internal limiting lamina" EXACT []
xref: FMA:58689
xref: MA:0001313
xref: ncithesaurus:Inner_Limiting_Membrane
xref: SCTID:280677004
xref: TAO:0001029
xref: XAO:0003222
xref: ZFA:0001029
is_a: UBERON:0007619 ! limiting membrane of retina
relationship: adjacent_to UBERON:0001797 ! vitreous humor
[Term]
id: UBERON:0001795
name: inner plexiform layer of retina
def: "The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells[GO]." [Wikipedia:Inner_plexiform_layer]
comment: BTO misspelling?
subset: vertebrate_core
synonym: "inner plexiform layer" RELATED [BTO:0003175]
synonym: "IPL" NARROW []
synonym: "retina inner plexiform layer" EXACT []
synonym: "retinal inner plexiform layer" EXACT []
synonym: "stratum plexifome internum" RELATED [BTO:0003175]
synonym: "stratum plexiforme internum" EXACT [FMA:58704]
synonym: "stratum plexiforme internum retinae" RELATED LATIN [Wikipedia:Inner_plexiform_layer]
xref: BTO:0003175
xref: FMA:58704
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Gray881.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png
xref: MA:0001312
xref: ncithesaurus:Inner_Plexiform_Layer
xref: NIF_GrossAnatomy:nlx_anat_1005032
xref: SCTID:280682006
xref: TAO:0001329
xref: VHOG:0001168
xref: XAO:0003225
xref: ZFA:0001329
property_value: UBPROP:0000001 "The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells.[TAO]" xsd:string
is_a: UBERON:0003902 ! retinal neural layer
relationship: adjacent_to UBERON:0001791
relationship: adjacent_to UBERON:0001792
intersection_of: UBERON:0001781 ! layer of retina
intersection_of: adjacent_to UBERON:0001791 ! inner nuclear layer of retina
intersection_of: adjacent_to UBERON:0001792 ! ganglionic layer of retina
relationship: adjacent_to UBERON:0001791 ! inner nuclear layer of retina
relationship: adjacent_to UBERON:0001792 ! ganglionic layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001796
name: aqueous humor of eyeball
def: "Body substance in liquid state contained in the anterior and posterior chambers of the eyeball[FMA]. The aqueous humour is a thick watery substance filling the space between the lens and the cornea[WP]." [FMA:58819, Wikipedia:Aqueous_humor]
comment: Note that FMA says A+P chambers, and MA states A chamber
subset: uberon_slim
subset: vertebrate_core
synonym: "aqueous humor" EXACT []
synonym: "aqueous humour" EXACT []
synonym: "humor aquosus" EXACT [FMA:58819, FMA:TA]
xref: EHDAA2:0000139
xref: EHDAA:10196
xref: EMAPA:18232
xref: ENVO:02000024
xref: FMA:58819
xref: GAID:890
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0001236
xref: MESH:A.09.371.060.067.070
xref: ncithesaurus:Aqueous_Humor
xref: OpenCyc:Mx4rvdGd-5wpEbGdrcN5Y29ycA
xref: SCTID:280587006
xref: VHOG:0000548
xref: ZFA:0005564
is_a: UBERON:0006312 ! ocular refractive media
relationship: part_of UBERON:0001766 ! anterior chamber of eyeball
[Term]
id: UBERON:0001797
name: vitreous humor
def: "Body substance of semisolid state which constitutes the vitreous body of the eye.[FMA]" [FMA:FMA, Wikipedia:Vitreous_humour]
comment: Note that FMA distinguishes between a portion and the whole portion. We equate with whole portion here, but this is arbitrary
subset: uberon_slim
subset: vertebrate_core
synonym: "humor vitreous" EXACT []
synonym: "humor vitreus" EXACT [FMA:58822, FMA:TA]
synonym: "humoral fluid" RELATED [BTO:0001451]
synonym: "ocular fluid" RELATED [BTO:0001451]
synonym: "portion of vitreous humor" BROAD [FMA:67388]
synonym: "vitreous" EXACT [ZFA:0005561]
synonym: "vitreous fluid" RELATED [BTO:0001451]
synonym: "vitreous humour" RELATED []
synonym: "whole portion of vitreous humor" EXACT [FMA:58822]
xref: BTO:0001451
xref: EMAPA:17837
xref: ENVO:02000032
xref: EV:0100344
xref: FMA:58822
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0001286
xref: ncithesaurus:Vitreous_Humor
xref: OpenCyc:Mx4rv7ZIfZwpEbGdrcN5Y29ycA
xref: VHOG:0000795
xref: ZFA:0005561
is_a: UBERON:0006312 ! ocular refractive media
relationship: part_of UBERON:0001798 ! vitreous body
relationship: part_of UBERON:0005606 ! hyaloid cavity
[Term]
id: UBERON:0001798
name: vitreous body
def: "Mucoid tissue in the vitreous chamber of the eyeball. Examples: There are only two instances, right and left vitreous bodies.[FMA]" [FMA:58827, FMA:FMA]
comment: Note - in many AOs these are exact synonyms, but FMA has a part of link between portion of vitreous humor and this
subset: uberon_slim
xref: ENVO:02000032
xref: FMA:58827
xref: GAID:919
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0002462
xref: MESH:A.09.371.943
xref: ncithesaurus:Vitreous_Body
xref: SCTID:181170006
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball
[Term]
id: UBERON:0001799
name: vitreous chamber of eyeball
def: "The posterior chamber is a narrow chink behind the peripheral part of the iris of the human eye, and in front of the suspensory ligament of the lens and the ciliary processes the Posterior Chamber consists of small space directly posterior of the Iris but anterior to the lens. [WP,unvetted]." [Wikipedia:Vitreous_chamber]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "camera postrema" EXACT []
synonym: "camera postrema bulbi oculi" EXACT [FMA:58848, FMA:TA]
synonym: "camera vitrea" EXACT []
synonym: "camera vitrea bulbi" EXACT []
synonym: "postremal chamber" EXACT []
synonym: "postremal chamber of eyeball" EXACT []
synonym: "vitreous chamber" EXACT []
xref: BTO:0002087
xref: FMA:58848
xref: MA:0002461
xref: ncithesaurus:Vitreous_Chamber
is_a: UBERON:0006311 ! chamber of eyeball
relationship: part_of UBERON:0001802 ! posterior segment of eyeball
[Term]
id: UBERON:0001800
name: sensory ganglion
def: "the clusters of neurons in the somatic peripheral nervous system which contain the cell bodies of sensory nerve axons, interneurons and non-neuronal supporting cells." [MP:0000960]
comment: This class was created automatically from a combination of ontologies
synonym: "ganglion sensorium" EXACT []
xref: FMA:5885
xref: MA:0002566
xref: MESH:A.08.340.390
xref: ncithesaurus:Sensory_Ganglion
is_a: UBERON:0000045 ! ganglion
[Term]
id: UBERON:0001801
name: anterior segment of eyeball
def: "The anterior segment is the front third of the eye that includes the structures in front of the vitreous humour: the cornea, iris, ciliary body, and lens. Within the anterior segment are two fluid-filled spaces: the anterior chamber between the posterior surface of the cornea (i.e. the corneal endothelium) and the iris; the posterior chamber between the iris and the front face of the vitreous. Aqueous humor fills these spaces within the anterior segment and provides nutrients to the surrounding structures." [Wikipedia:Anterior_segment_of_eyeball]
subset: vertebrate_core
synonym: "anterior segment of eye" EXACT []
synonym: "anterior segment of the eye" EXACT []
synonym: "eye anterior segment" EXACT []
synonym: "segmentum anterius (bulbus oculi)" EXACT []
synonym: "segmentum anterius bulbi oculi" RELATED LATIN [Wikipedia:Anterior_segment_of_eyeball]
xref: FMA:58865
xref: http://upload.wikimedia.org/wikipedia/commons/b/ba/Cataract_in_human_eye.png
xref: MA:0002484
xref: MESH:A.09.371.060
xref: ncithesaurus:Anterior_Eye_Segment
xref: SCTID:280658001
xref: ZFA:0005566
property_value: "spatially_disjoint_from" UBERON:0001802
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye
[Term]
id: UBERON:0001802
name: posterior segment of eyeball
def: "The posterior segment is the back two-thirds of the eye that includes the anterior hyaloid membrane and all structures behind it: the vitreous humor, retina, choroid, and optic nerve. On the anterior side of the lens is the aqueous humour which is bounded on all sides by the lens, ciliary body, suspensory ligaments, and by the cornea. It lets light through without refraction, helps maintain the shape of the eye and suspends the delicate lens. In some animals, the retina contains a reflective layer (the tapetum lucidum) which increases the amount of light each photosensitive cell perceives, allowing the animal to see better under low light conditions." [Wikipedia:Posterior_segment_of_eyeball]
subset: vertebrate_core
synonym: "eye posterior segment" EXACT []
synonym: "posterior segment of eye" EXACT []
synonym: "posterior segment of the eye" EXACT []
synonym: "segmentum posterius (bulbus oculi)" EXACT []
synonym: "segmentum posterius bulbi oculi" RELATED LATIN [Wikipedia:Posterior_segment_of_eyeball]
xref: FMA:58868
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0002485
xref: ncithesaurus:Posterior_Eye_Segment
xref: SCTID:280659009
xref: ZFA:0005567
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0010230 {source="FMA"} ! eyeball of camera-type eye
[Term]
id: UBERON:0001803
name: epithelium of lens
def: "The cells of the lens epithelium regulate most of the homeostatic functions of the lens.[6] As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions." [Wikipedia:Lens_(anatomy)#Lens_Epithelium]
comment: Usage notes: this class is the superclass of the anterior epithelium and equatorial epithlium, although the term 'lens epithelium' may refer specifically to the former
subset: vertebrate_core
synonym: "epithelial tissue of eye lens" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lens" EXACT [OBOL:automatic]
synonym: "epithelium lentis" EXACT [FMA:58871, FMA:TA]
synonym: "epithelium of eye lens" EXACT [OBOL:automatic]
synonym: "eye lens epithelial tissue" EXACT [OBOL:automatic]
synonym: "eye lens epithelium" EXACT [OBOL:automatic]
synonym: "lens epithelial tissue" EXACT [OBOL:automatic]
synonym: "lens epithelium" EXACT []
xref: BTO:0001873
xref: FMA:58871
xref: MA:0001301
xref: SCTID:362523006
xref: TAO:0001326
xref: XAO:0004094
xref: ZFA:0001326
is_a: UBERON:0000484 ! simple cuboidal epithelium
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0000965
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000965 ! lens of camera-type eye
relationship: part_of UBERON:0000965 ! lens of camera-type eye
[Term]
id: UBERON:0001804
name: capsule of lens
def: "a smooth, transparent basement membrane that completely surrounds the lens. It is synthesized by the lens epithelium and its main components are Type IV collagen and sulfated glycosaminoglycans (GAGs)." [Wikipedia:Capsule_of_lens, Wikipedia:Lens_(anatomy)#Lens_capsule]
subset: uberon_slim
subset: vertebrate_core
synonym: "lens capsule" EXACT []
xref: EHDAA2:0000977
xref: EMAPA:18237
xref: FMA:58881
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png
xref: MA:0001300
xref: ncithesaurus:Lens_Capsule
xref: SCTID:244500004
xref: VHOG:0000550
xref: ZFA:0005574
is_a: UBERON:0003893 ! capsule
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005769 {source="Wikipedia"} ! basement membrane
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: surrounds UBERON:0000965
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0000965 ! lens of camera-type eye
relationship: develops_from UBERON:0001803 {source="Wikipedia"} ! epithelium of lens
relationship: develops_from UBERON:0005614 {source="EHDAA2"} ! lens anterior epithelium
relationship: surrounds UBERON:0000965 ! lens of camera-type eye
[Term]
id: UBERON:0001805
name: autonomic ganglion
def: "ganglion that has dendrites that form a junction between autonomic nerves originating from the central nervous system and autonomic nerves innervating their target organs in the periphery. There are two subtypes, sympathetic ganglion and parasympathetic ganglion." [Wikipedia:Autonomic_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "autonomic nervous system ganglion" EXACT [OBOL:automatic]
synonym: "ganglion autonomicum" RELATED LATIN [Wikipedia:Autonomic_ganglion]
synonym: "ganglion of autonomic nervous system" EXACT [OBOL:automatic]
synonym: "ganglion of visceral nervous system" EXACT [OBOL:automatic]
synonym: "visceral nervous system ganglion" EXACT [OBOL:automatic]
xref: EMAPA:17157
xref: EMAPA:18221
xref: FMA:5889
xref: http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png
xref: MA:0000220
xref: ncithesaurus:Autonomic_Ganglion
is_a: UBERON:0003338 ! ganglion of peripheral nervous system
relationship: part_of UBERON:0002410
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0002410 ! autonomic nervous system
relationship: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0001806
name: sympathetic ganglion
def: "Sympathetic ganglia are the ganglia of the sympathetic nervous system. They deliver information to the body about stress and impending danger, and are responsible for the familiar fight-or-flight response. They contain approximately 20000–30000 nerve cell bodies and are located close to and on either side of the spinal cord in long chains. [WP,unvetted]." [Wikipedia:Sympathetic_ganglion]
subset: uberon_slim
synonym: "ganglion of sympathetic nervous system" EXACT [OBOL:automatic]
synonym: "ganglion of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic]
synonym: "ganglion sympatheticum" EXACT []
synonym: "ganglion sympathicum" RELATED [BTO:0001333]
synonym: "ganglion sympathicum" RELATED LATIN [Wikipedia:Sympathetic_ganglion]
synonym: "sympathetic nervous system ganglion" EXACT [OBOL:automatic]
synonym: "sympathetic part of autonomic division of nervous system ganglion" EXACT [OBOL:automatic]
xref: AAO:0010773
xref: BTO:0001333
xref: EHDAA2:0001969
xref: EMAPA:17157
xref: FMA:5890
xref: http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png
xref: MA:0000226
xref: ncithesaurus:Sympathetic_Ganglion
xref: SCTID:362485003
is_a: UBERON:0001805 ! autonomic ganglion
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000013
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0000013 ! sympathetic nervous system
relationship: develops_from UBERON:0002342 {source="ISBN10:0073040584"} ! neural crest
relationship: part_of UBERON:0000013 ! sympathetic nervous system
[Term]
id: UBERON:0001807
name: paravertebral ganglion
def: "Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord." [Wikipedia:Paravertebral_ganglion, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "ganglion of sympathetic trunk" EXACT []
synonym: "ganglion trunci sympathetici" EXACT []
synonym: "ganglion trunci sympathici" EXACT [FMA:5891, FMA:TA]
synonym: "sympathetic chain ganglion" EXACT []
xref: FMA:5891
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray847.png/200px-Gray847.png
xref: TAO:0001556
xref: ZFA:0001556
is_a: UBERON:0001806 ! sympathetic ganglion
is_a: UBERON:0007134 {source="ZFA"} ! trunk ganglion
relationship: part_of UBERON:0000013 {source="ZFA"} ! sympathetic nervous system
[Term]
id: UBERON:0001808
name: parasympathetic ganglion
def: "Parasympathetic ganglia are the autonomic ganglia of the parasympathetic nervous system. Most are small terminal ganglia or intramural ganglia, so named because they lie near or within (respectively) the organs they innervate. The exceptions are the four paired parasympathetic ganglia of the head and neck. [WP,unvetted]." [Wikipedia:Parasympathetic_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ganglion parasympathicum" RELATED LATIN [Wikipedia:Parasympathetic_ganglion]
synonym: "ganglion parasympathicum" RELATED [BTO:0001256]
xref: BTO:0001256
xref: EHDAA2:0001400
xref: FMA:5894
xref: http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png
xref: MA:0002469
xref: ncithesaurus:Parasympathetic_Ganglion
xref: NIF_GrossAnatomy:nlx_anat_100303
xref: SCTID:279284004
is_a: UBERON:0001805 ! autonomic ganglion
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000011
intersection_of: UBERON:0001805 ! autonomic ganglion
intersection_of: part_of UBERON:0000011 ! parasympathetic nervous system
relationship: develops_from UBERON:0002342 {source="ISBN10:0073040584"} ! neural crest
relationship: part_of UBERON:0000011 ! parasympathetic nervous system
[Term]
id: UBERON:0001809
name: enteric ganglion
def: "." [Wikipedia:Enteric_ganglia]
synonym: "intramural ganglion" EXACT [FMA:5896]
xref: FMA:5896
xref: MA:0001144
xref: ncithesaurus:Enteric_Ganglion
is_a: UBERON:0001808 {source="FMA"} ! parasympathetic ganglion
relationship: part_of UBERON:0002005
intersection_of: UBERON:0001808 ! parasympathetic ganglion
intersection_of: part_of UBERON:0002005 ! enteric nervous system
relationship: part_of UBERON:0002005 ! enteric nervous system
[Term]
id: UBERON:0001810
name: nerve plexus
def: "Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus[FMA]." [FMA:5901, Wikipedia:Nervous_system_plexus]
comment: in FMA this is a subtype of junction rather than tissue
subset: uberon_slim
xref: AEO:0000138
xref: BTO:0000205
xref: EHDAA2:0003138
xref: EHDAA:3780
xref: EMAPA:16987
xref: EMAPA:18224
xref: FMA:5901
xref: MA:0002407
xref: ncithesaurus:Nerve_Plexus
xref: SCTID:122455009
is_a: UBERON:0003714 ! neural tissue
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001811
name: conjunctiva
def: "The conjunctiva is a clear mucous membrane consisting of cells and underlying basement membrane that covers the sclera (white part of the eye) and lines the inside of the eyelids. It is made of epithelial tissue. [WP,unvetted]." [Wikipedia:Conjunctiva]
subset: uberon_slim
synonym: "wall of conjunctival sac" EXACT []
xref: AAO:0010343
xref: BTO:0003415
xref: EFO:0000374
xref: EV:0100340
xref: FMA:59011
xref: GAID:898
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Gray883.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png
xref: MA:0000265
xref: MESH:A.09.371.192
xref: ncithesaurus:Conjunctiva
xref: SCTID:181161008
xref: XAO:0000182
is_a: UBERON:0000060 {source="FMA"} ! anatomical wall
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: adjacent_to UBERON:0001711 ! eyelid
relationship: adjacent_to UBERON:0001773 ! sclera
relationship: part_of UBERON:0005908 {source="cjm"} ! conjunctival sac
relationship: part_of UBERON:0010409 {source="MA"} ! eye surface
[Term]
id: UBERON:0001812
name: palpebral conjunctiva
comment: lines the eyeballs
synonym: "tarsal conjunctiva" EXACT [Wikipedia:Conjunctiva]
synonym: "tunica conjunctiva palpebrum" EXACT []
xref: FMA:59025
xref: MA:0001265
xref: ncithesaurus:Palpebral_Conjunctiva
xref: SCTID:280666005
is_a: UBERON:0010305 ! region of conjunctiva
relationship: part_of UBERON:0001711 ! eyelid
relationship: part_of UBERON:0001811 {source="FMA"} ! conjunctiva
[Term]
id: UBERON:0001813
name: somatic nerve plexus
def: "A nerve plexus that is part of a somatic nervous system [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "plexus nervorum spinalium" EXACT [FMA:5903, FMA:TA]
synonym: "plexus of spinal nerves" EXACT [FMA:5903]
synonym: "spinal nerve plexus" EXACT [FMA:5903]
xref: EHDAA2:0001899
xref: EMAPA:16987
xref: FMA:5903
xref: MA:0000235
xref: ncithesaurus:Spinal_Nerve_Plexus
xref: SCTID:42280003
xref: VHOG:0000925
is_a: UBERON:0001810 ! nerve plexus
relationship: part_of UBERON:0000012
intersection_of: UBERON:0001810 ! nerve plexus
intersection_of: part_of UBERON:0000012 ! somatic nervous system
relationship: part_of UBERON:0000012 ! somatic nervous system
[Term]
id: UBERON:0001814
name: brachial nerve plexus
def: "The brachial plexus is an arrangement of nerve fibers, running from the spine, formed by the ventral rami of the lower cervical and upper thoracic nerve root, specifically from below the fifth cervical vertebra to above the first thoracic vertebra. It proceeds through the neck, the axilla (armpit region) and into the arm. [WP,unvetted]." [Wikipedia:Brachial_plexus]
comment: check superclass - nerve vs collection of fibers vs junction; note that FMA also has 'brachial autonomic nerve plexus'
subset: uberon_slim
synonym: "brachial plexus" EXACT []
synonym: "plexus brachialis" RELATED LATIN [Wikipedia:Brachial_plexus]
synonym: "plexus brachialis" RELATED [Wikipedia:Brachial_plexus]
xref: EHDAA2:0000180
xref: EHDAA:3782
xref: EMAPA:16988
xref: FMA:5906
xref: GAID:842
xref: http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray808.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray808.png/200px-Gray808.png
xref: MA:0001180
xref: MESH:A.08.800.800.720.050
xref: ncithesaurus:Brachial_Plexus
xref: OpenCyc:Mx4rwNWmO5wpEbGdrcN5Y29ycA
xref: SCTID:181002002
xref: VHOG:0000372
is_a: UBERON:0001813 {source="MA"} ! somatic nerve plexus
relationship: overlaps UBERON:0002102 ! forelimb
[Term]
id: UBERON:0001815
name: lumbosacral nerve plexus
def: "The anterior divisions of the lumbar nerve, sacral nerve, and coccygeal nerves form the lumbosacral plexus, the first lumbar nerve being frequently joined by a branch from the twelfth thoracic. For descriptive purposes this plexus is usually divided into three parts: lumbar plexus sacral plexus pudendal plexus [WP,unvetted]." [Wikipedia:Lumbosacral_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lumbosacral plexus" EXACT []
synonym: "plexus lumbosacralis" EXACT [FMA:5907, FMA:TA]
synonym: "plexus lumbosacralis" RELATED LATIN [Wikipedia:Lumbosacral_plexus]
xref: EHDAA2:0001040
xref: EHDAA:4673
xref: EMAPA:17587
xref: FMA:5907
xref: GAID:849
xref: http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray822.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Gray822.png/200px-Gray822.png
xref: MA:0001181
xref: MESH:A.08.800.800.720.450
xref: ncithesaurus:Lumbosacral_Plexus
xref: OpenCyc:Mx4rvzYo75wpEbGdrcN5Y29ycA
xref: SCTID:181049003
xref: VHOG:0000926
is_a: UBERON:0001813 ! somatic nerve plexus
[Term]
id: UBERON:0001816
name: autonomic nerve plexus
def: "A nerve plexus that is part of an autonomic nervous system [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "autonomic plexus" EXACT []
synonym: "plexus autonomicus" EXACT [FMA:5910, FMA:TA]
synonym: "plexus nervosus visceralis" EXACT [FMA:5910, FMA:TA]
synonym: "plexus visceralis" EXACT [FMA:5910, FMA:TA]
synonym: "visceral nerve plexus" EXACT []
synonym: "visceral plexus" EXACT []
xref: EMAPA:18224
xref: FMA:5910
xref: MA:0000221
xref: SCTID:362482000
is_a: UBERON:0001810 ! nerve plexus
relationship: part_of UBERON:0002410
intersection_of: UBERON:0001810 ! nerve plexus
intersection_of: part_of UBERON:0002410 ! autonomic nervous system
relationship: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0001817
name: lacrimal gland
def: "Lobular organ the parenchyma of which consists of glandular acini which communicate the lacrimal sac. Examples: There only two instances, right lacrimal and left lacrimal glands[FMA]. The lacrimal glands are paired almond-shaped glands, one for each eye, that secrete the aqueous layer of the tear film. They are situated in the upper, outer portion of each orbit. Inflammation of the lacrimal glands is called dacryoadenitis[WP]." [Wikipedia:Lacrimal_gland]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "glandula lacrimalis" RELATED LATIN [Wikipedia:Lacrimal_gland]
xref: BTO:0000044
xref: EFO:0001389
xref: EV:0100339
xref: FMA:59101
xref: http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray896.png/200px-Gray896.png
xref: MA:0001296
xref: ncithesaurus:Lacrimal_Gland
xref: SCTID:181147003
xref: VHOG:0001476
is_a: UBERON:0002365 ! exocrine gland
is_a: UBERON:0004859 ! eye gland
relationship: part_of UBERON:0001750 ! lacrimal apparatus
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001818
name: tarsal gland
def: "The meibomian glands (or tarsal glands) are a special kind of sebaceous glands at the rim of the eyelids, responsible for the supply of sebum, an oily substance that prevents evaporation of the eye's tear film, prevents tear spillage onto the cheek, and makes the closed lids airtight. There are approximately 50 glands on the upper eyelids and 25 glands on the lower eyelids. The glands are named after Heinrich Meibom (1638-1700), a German physician. [WP,unvetted]." [Wikipedia:Meibomian_gland]
subset: organ_slim
subset: uberon_slim
synonym: "gland of meibom" EXACT []
synonym: "meibomian gland" EXACT []
synonym: "palpebral gland" RELATED []
xref: BTO:0004165
xref: FMA:59104
xref: GAID:899
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1205.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Gray1205.png/200px-Gray1205.png
xref: MA:0001249
xref: MESH:A.09.371.337.614
xref: ncithesaurus:Meibomian_Gland
xref: SCTID:280585003
is_a: UBERON:0003484 ! eye sebaceous gland
is_a: UBERON:0003487 ! skin sebaceous gland
is_a: UBERON:0003605 ! eye skin gland
relationship: part_of UBERON:0004772
relationship: secretes UBERON:0001866
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: part_of UBERON:0004772 ! eyelid tarsus
intersection_of: secretes UBERON:0001866 ! sebum
relationship: part_of UBERON:0004772 ! eyelid tarsus
relationship: secretes UBERON:0001866 ! sebum
[Term]
id: UBERON:0001819
name: palpebral fissure
def: "Orifice separating upper and lower eyelids. In the human adult this measures about 10mm vertically and 30 mm horizontally. It can be reduced in size in fetal alcohol syndrome. In Trisomy 9 the palpebral fissures can be upslanting. [WP,modified]." [Wikipedia:Palpebral_fissure]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "rima palpebrarum" RELATED LATIN [Wikipedia:Palpebral_fissure]
xref: FMA:59110
xref: http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray892.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray892.png/200px-Gray892.png
xref: MA:0001266
xref: SCTID:280576003
is_a: UBERON:0000161 {source="FMA"} ! orifice
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001711 {source="MA"} ! eyelid
[Term]
id: UBERON:0001820
name: sweat gland
def: "Sweat glands are exocrine glands, found in the skin of all mammal species, that are used for body temperature regulation. In humans a system of apocrine - and merocrine sweat glands is the main method of cooling. Many other mammals rely on panting or other means as a primary source of cooling, but still use sweat glands to aid in body temperature regulation. Sweat also serves a purpose of increasing friction on the palms of hands or the pads of paws. Both apocrine and merocrine sweat glands contain myoepithelial cells (from Greek myo-, 'muscle'), specialized epithelial cells located between the gland cells and the underlying basal lamina. Myoepithelial cell contractions squeeze the gland and discharge the accumulated secretions. The secretory activities of the gland cells and the contractions of myoepithelial cells are controlled by both the autonomic nervous system and by the circulating hormones. Additionally, ceruminous glands, which produce ear wax, and mammary glands, which produce milk, are frequently considered to be modified sweat glands. [WP,unvetted]." [Wikipedia:Sweat_gland]
comment: todo - check if all sweat glands are epidermal - see EMAPA:29743
subset: organ_slim
subset: uberon_slim
synonym: "glandula sudorifera" RELATED [BTO:0001331]
synonym: "sudoriferous gland" RELATED [BTO:0001331]
synonym: "sudoriparous gland" RELATED [BTO:0001331]
xref: BTO:0001331
xref: EV:0100160
xref: FMA:59152
xref: GAID:943
xref: http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png
xref: MA:0000150
xref: MESH:A.10.336.899
xref: ncithesaurus:Sweat_Gland
xref: OpenCyc:Mx4rvVjx15wpEbGdrcN5Y29ycA
xref: SCTID:361700009
xref: VHOG:0001467
is_a: UBERON:0002365 {source="MA"} ! exocrine gland
is_a: UBERON:0007771 ! epidermis gland
relationship: secretes UBERON:0001089
intersection_of: UBERON:0002530 ! gland
intersection_of: secretes UBERON:0001089 ! sweat
relationship: develops_from UBERON:0005089 {evidence="definitional"} ! sweat gland placode
relationship: part_of UBERON:0001003 {source="FMA"} ! epidermis
relationship: secretes UBERON:0001089 ! sweat
[Term]
id: UBERON:0001821
name: sebaceous gland
def: "The sebaceous glands are microscopic glands in the skin which secrete an oily/waxy matter, called sebum, to lubricate the skin and hair of animals. [WP,unvetted]." [Wikipedia:Sebaceous_gland]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "glandula sebacea" RELATED LATIN [Wikipedia:Sebaceous_gland]
synonym: "glandula sebaceae" RELATED [BTO:0001980]
synonym: "sebaceous follicle" RELATED [BTO:0001980]
xref: BTO:0001980
xref: EV:0100161
xref: FMA:59160
xref: GAID:900
xref: http://upload.wikimedia.org/wikipedia/commons/4/49/HairFollicle.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/HairFollicle.png/200px-HairFollicle.png
xref: MA:0002565
xref: MESH:A.10.336.827
xref: ncithesaurus:Sebaceous_Gland
xref: SCTID:361697005
xref: VHOG:0001468
is_a: UBERON:0002365 ! exocrine gland
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0005088 {evidence="definitional"} ! sebaceous gland placode
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001822
name: orbital septum
def: "a membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]." [Wikipedia:Orbital_septum]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "septum orbitale" RELATED LATIN [Wikipedia:Orbital_septum]
xref: FMA:59328
xref: http://upload.wikimedia.org/wikipedia/commons/1/18/Gray891.png
xref: MA:0001259
xref: SCTID:368859002
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0000094 ! membrane organ
is_a: UBERON:0003037 ! septum
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002204 ! musculoskeletal system
relationship: part_of UBERON:0004772 ! eyelid tarsus
relationship: surrounds UBERON:0001697 ! orbital region
[Term]
id: UBERON:0001823
name: nasal cartilage
def: "One of the cartilage structures in the nose that provide form and support[WP]." [Wikipedia:Nasal_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cartilage of nose" EXACT []
xref: FMA:59502
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray852.png/200px-Gray852.png
xref: MA:0001883
xref: ncithesaurus:Nasal_Cartilage
xref: SCTID:278941001
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000004
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0000004 ! olfactory apparatus
relationship: encloses UBERON:0000402 ! nasal vestibule
relationship: part_of UBERON:0000004 ! olfactory apparatus
[Term]
id: UBERON:0001824
name: mucosa of larynx
def: "the mucous lining of the larynx, which is composed of squamous epithelium in the upper larynx and ciliated columnar epithelium in the lower larynx." [MP:0002261]
comment: This class was created automatically from a combination of ontologies
synonym: "laryngeal mucosa" EXACT []
synonym: "larynx mucosa" EXACT []
synonym: "larynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "larynx mucous membrane" EXACT [OBOL:automatic]
synonym: "larynx organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of larynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of larynx" EXACT []
synonym: "organ mucosa of larynx" EXACT [OBOL:automatic]
synonym: "tunica mucosa laryngis" EXACT [FMA:59662, FMA:TA]
xref: EMAPA:18334
xref: FMA:59662
xref: GAID:301
xref: MA:0001766
xref: MESH:A.04.329.597
xref: ncithesaurus:Laryngeal_Mucosa
xref: SCTID:361940006
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004785 ! respiratory system mucosa
relationship: part_of UBERON:0001737
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0001825
name: paranasal sinus
def: "Paranasal sinuses are air-filled spaces, communicating with the nasal cavity, within the bones of the skull and face. [WP,unvetted]." [Wikipedia:Paranasal_sinuses]
comment: Arise as epithelial lined diverticula of the lining of the nasal cavity. The extent of sinus development varies with species, most of the development occurs postnatally
subset: uberon_slim
synonym: "nasal sinus" RELATED [GAID:355]
synonym: "sinus" BROAD []
xref: EHDAA:6489
xref: EMAPA:18633
xref: EV:0100038
xref: FMA:59679
xref: GAID:355
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png
xref: MA:0000431
xref: MESH:A.04.531.621
xref: ncithesaurus:Paranasal_Sinus
xref: SCTID:181203001
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0001826
name: nasal cavity mucosa
def: "the mucous membrane that lines the nasal cavity[MP]." [MP:0002238]
comment: TODO - check lining vs part of. split olfactory and nasal mucosa?
synonym: "mucosa of nose" EXACT [FMA:59684]
synonym: "mucous membrane of nose" EXACT [FMA:59684]
synonym: "nasal mucosa" RELATED []
synonym: "tunica mucosa nasalis" EXACT []
synonym: "tunica mucosa nasi" EXACT [FMA:59684, FMA:TA]
xref: BTO:0000912
xref: FMA:59684
xref: GAID:302
xref: SCTID:310211009
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004785 ! respiratory system mucosa
relationship: part_of UBERON:0001707
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001707 ! nasal cavity
relationship: part_of UBERON:0001707 ! nasal cavity
[Term]
id: UBERON:0001827
name: lacrimal gland secretion
def: "Secretion produced by the lacrimal gland.[FMA]" [FMA:FMA, Wikipedia:Tear]
subset: uberon_slim
synonym: "tear" EXACT [FMA:59756]
xref: BTO:0001499
xref: ENVO:02000034
xref: FMA:59756
xref: GAID:1173
xref: galen:Tear
xref: galen:Tears
xref: MA:0002508
xref: MESH:A.12.200.882
xref: ncithesaurus:Tear
is_a: UBERON:0000456 ! bodily secretion
relationship: secreted_by UBERON:0001817
intersection_of: UBERON:0000456 ! bodily secretion
intersection_of: secreted_by UBERON:0001817 ! lacrimal gland
relationship: secreted_by UBERON:0001817 ! lacrimal gland
[Term]
id: UBERON:0001828
name: gingiva
def: "The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva]
comment: Editor notes: FMA has a 3-level breakdown of jaws into: region, jaw (skeleton+gums), skeleton.
subset: uberon_slim
synonym: "gum" EXACT [FMA:59762]
synonym: "gum tissue" EXACT [UBERON:cjm]
synonym: "gums" EXACT []
xref: BTO:0000519
xref: EFO:0001925
xref: EV:0100064
xref: FMA:59762
xref: GAID:1257
xref: galen:Gingiva
xref: http://upload.wikimedia.org/wikipedia/commons/2/2e/Tooth_Section.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png
xref: MA:0000342
xref: MESH:A.14.254.646.480
xref: ncithesaurus:Gingiva
xref: OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA
xref: SCTID:181224006
xref: VHOG:0001269
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: adjacent_to UBERON:0004103 ! alveolar ridge
relationship: part_of UBERON:0003729 {source="FMA"} ! mouth mucosa
relationship: part_of UBERON:0011595 ! jaw region
[Term]
id: UBERON:0001829
name: major salivary gland
def: "the three largest glands of the oral cavity that secrete most of the saliva, including the parotid, submandibular, and sublingual glands." [MP:0003792]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
xref: FMA:59788
xref: galen:MajorSalivaryGland
xref: MA:0002478
xref: ncithesaurus:Major_Salivary_Gland
xref: SCTID:303049006
is_a: UBERON:0001044 ! salivary gland
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001830
name: minor salivary gland
def: "the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands[MP]. There are over 600 minor salivary glands located throughout the oral cavity within the lamina propria of the oral mucosa. They are 1-2mm in diameter and unlike the other glands, they are not encapsulated by connective tissue only surrounded by it. The gland is usually a number of acini connected in a tiny lobule. A minor salivary gland may have a common excretory duct with another gland, or may have its own excretory duct. Their secretion is mainly mucous in nature (except for Von Ebner's glands) and have many functions such as coating the oral cavity with saliva. Problems with dentures are usually associated with minor salivary glands[WP]." [MP:0003791, Wikipedia:Salivary_gland#Minor_Salivary_Glands]
subset: organ_slim
xref: FMA:59789
xref: GAID:940
xref: galen:MinorSalivaryGland
xref: MA:0002479
xref: MESH:A.10.336.779.650
xref: ncithesaurus:Minor_Salivary_Gland
xref: SCTID:362177001
is_a: UBERON:0001044 ! salivary gland
relationship: part_of UBERON:0002330 ! exocrine system
relationship: part_of UBERON:0005334 ! oral lamina propria
[Term]
id: UBERON:0001831
name: parotid gland
def: "The parotid gland is the largest of the salivary glands. It is found wrapped around the mandibular ramus, and it secretes saliva through Stensen's duct into the oral cavity, to facilitate mastication and swallowing. [WP,unvetted]." [Wikipedia:Parotid_gland]
subset: uberon_slim
synonym: "glandula parotidea" RELATED LATIN [Wikipedia:Parotid_gland]
synonym: "parotid" EXACT []
xref: AAO:0010095
xref: BTO:0001004
xref: EFO:0002558
xref: EMAPA:18537
xref: EV:0100060
xref: FMA:59790
xref: GAID:938
xref: galen:ParotidGland
xref: http://upload.wikimedia.org/wikipedia/commons/5/51/Illu_quiz_hn_02.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg
xref: MA:0001585
xref: MESH:A.10.336.779.464
xref: ncithesaurus:Parotid_Gland
xref: OpenCyc:Mx4rvqwyg5wpEbGdrcN5Y29ycA
xref: SCTID:181234002
xref: VHOG:0000308
is_a: UBERON:0001829 ! major salivary gland
relationship: develops_from UBERON:0008801 ! parotid gland primordium
relationship: part_of UBERON:0001567 ! cheek
[Term]
id: UBERON:0001832
name: sublingual gland
def: "The sublingual glands are salivary glands in the mouth. They lie anterior to the submandibular gland under the tongue, beneath the mucous membrane of the floor of the mouth. They are drained by 8-20 excretory ducts called the ducts of Rivinus. The largest duct, the sublingual duct (of Bartholin) joins the submandibular duct to drain through the sublingual caruncle. The sublingual gland consists mostly of Mucous acini capped with serous demilunes and is therefore categorized as a mixed gland. Most of the remaining small sublingual ducts open separately into the mouth on an elevated crest of mucous membrane, the sublingual fold, caused by the gland and on either side of the frenulum linguae. The chorda tympani nerve is secretomotor to the sublingual glands. [WP,unvetted]." [Wikipedia:Sublingual_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ductus sublingualis" EXACT []
synonym: "glandula sublingualis" RELATED LATIN [Wikipedia:Sublingual_gland]
synonym: "Rivinus gland" RELATED [BTO:0001315]
synonym: "Rivinus' gland" EXACT []
synonym: "sublingual salivary gland" RELATED []
synonym: "submaxillary gland" RELATED [MA:0001589]
xref: BTO:0001315
xref: EMAPA:18809
xref: EV:0100062
xref: FMA:59791
xref: GAID:941
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray1024.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray1024.png/200px-Gray1024.png
xref: MA:0001588
xref: MESH:A.10.336.779.687
xref: ncithesaurus:Sublingual_Salivary_Gland
xref: SCTID:362176005
xref: VHOG:0000363
is_a: UBERON:0001829 {source="FMA"} ! major salivary gland
disjoint_from: UBERON:0009964 ! crustacean maxillary gland
relationship: develops_from UBERON:0006297 ! sublingual gland primordium
[Term]
id: UBERON:0001833
name: lip
def: "One of the two fleshy folds which surround the opening of the mouth. " [http://www.medterms.com/script/main/art.asp?articlekey=9458, Wikipedia:Lip]
subset: uberon_slim
subset: vertebrate_core
synonym: "labia oris" RELATED LATIN [Wikipedia:Lip]
synonym: "lips" RELATED []
xref: BTO:0001647
xref: FMA:59816
xref: GAID:76
xref: galen:Lip
xref: http://upload.wikimedia.org/wikipedia/commons/9/90/Lips.JPG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Mouth.jpg/200px-Mouth.jpg
xref: MA:0000343
xref: MESH:A.01.456.505.631.515
xref: ncithesaurus:Lip
xref: OpenCyc:Mx4rvVi4U5wpEbGdrcN5Y29ycA
xref: SCTID:181221003
xref: TAO:0007006
xref: VHOG:0000677
xref: ZFA:0007006
property_value: RO:0002161 NCBITaxon:8782
property_value: UBPROP:0000001 "Surface structure that is one of the two fleshy folds surrounding the opening of the mouth.[TAO]" xsd:string
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165 ! mouth
relationship: surrounds UBERON:0000166 ! oral opening
[Term]
id: UBERON:0001834
name: upper lip
alt_id: UBERON:0003391
def: "Lip that covers the upper portion of the mouth.[TAO]." [TAO:0001970, Wikipedia:Upper_lip]
subset: uberon_slim
subset: vertebrate_core
synonym: "labium superius oris" RELATED LATIN [Wikipedia:Upper_lip]
synonym: "upper jaw lip" EXACT [UBERON:cjm]
xref: EMAPA:17925
xref: FMA:59817
xref: http://upload.wikimedia.org/wikipedia/commons/d/d4/Illu01_head_neck.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg
xref: MA:0000919
xref: OpenCyc:Mx4rvWPv7pwpEbGdrcN5Y29ycA
xref: SCTID:245776003
xref: TAO:0001970
xref: VHOG:0001750
xref: ZFA:0005226
property_value: UBPROP:0000001 "Lip that covers the upper portion of the mouth.[TAO]" xsd:string
is_a: UBERON:0001833 ! lip
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001709
intersection_of: UBERON:0001833 ! lip
intersection_of: part_of UBERON:0001709 ! upper jaw region
relationship: develops_from UBERON:0011592 ! future upper lip
relationship: part_of UBERON:0001709 ! upper jaw region
[Term]
id: UBERON:0001835
name: lower lip
alt_id: UBERON:0003392
def: "Lip that covers the upper portion of the mouth.[TAO]." [TAO:0002060, Wikipedia:Lower_lip]
subset: uberon_slim
subset: vertebrate_core
synonym: "labium inferius oris" RELATED LATIN [Wikipedia:Lower_lip]
synonym: "lower jaw lip" EXACT [UBERON:cjm]
xref: EHDAA2:0001020
xref: EMAPA:17909
xref: FMA:59818
xref: http://upload.wikimedia.org/wikipedia/commons/9/99/Mouth.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Mouth.jpg/200px-Mouth.jpg
xref: MA:0000921
xref: ncithesaurus:Lower_Lip
xref: OpenCyc:Mx4rv842UpwpEbGdrcN5Y29ycA
xref: SCTID:245777007
xref: TAO:0002060
xref: ZFA:0005225
property_value: UBPROP:0000001 "Lip that covers the lower portion of the mouth.[TAO]" xsd:string
is_a: UBERON:0001833 ! lip
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001710
intersection_of: UBERON:0001833 ! lip
intersection_of: part_of UBERON:0001710 ! lower jaw region
relationship: develops_from UBERON:0011596 ! future lower lip
relationship: part_of UBERON:0001710 ! lower jaw region
[Term]
id: UBERON:0001836
name: saliva
def: "In humans, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin[GO]." [GO:0046541, Wikipedia:Saliva]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sailva normalis" RELATED LATIN [Wikipedia:Saliva]
synonym: "saliva atomaris" RELATED LATIN [Wikipedia:Saliva]
synonym: "saliva molecularis" RELATED LATIN [Wikipedia:Saliva]
synonym: "salivary gland secretion" EXACT [FMA:59862]
xref: BTO:0001202
xref: ENVO:02000036
xref: FMA:59862
xref: GAID:1167
xref: galen:Saliva
xref: MA:0002507
xref: MAT:0000444
xref: MESH:A.12.200.666
xref: ncithesaurus:Saliva
xref: OpenCyc:Mx4rvVjJ95wpEbGdrcN5Y29ycA
is_a: UBERON:0000456 ! bodily secretion
[Term]
id: UBERON:0001837
name: duct of salivary gland
def: "An intralobular duct found in salivary glands and involved in the production and transport of their secretions[BTO]." [BTO:0005115, Wikipedia:Salivary_duct]
comment: check taxonomy coverage - define functionally?
subset: uberon_slim
synonym: "salivary duct" EXACT []
synonym: "salivary gland duct" EXACT []
synonym: "secretory duct" RELATED [BTO:0005115]
xref: BTO:0005115
xref: FMA:59908
xref: GAID:939
xref: MA:0001586
xref: MESH:A.10.336.779.640
xref: SCTID:181238004
is_a: UBERON:0003928 ! digestive system duct
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: channel_for UBERON:0001836 ! saliva
relationship: channels_from UBERON:0001044 ! salivary gland
relationship: channels_into UBERON:0000165 ! mouth
relationship: part_of UBERON:0001044 ! salivary gland
[Term]
id: UBERON:0001838
name: sublingual duct
def: "The excretory ducts of the sublingual gland are from eight to twenty in number. Of the smaller sublingual ducts (ducts of Rivinus), some join the submandibular duct; others open separately into the mouth, on the elevated crest of mucous membrane (plica sublingualis), caused by the projection of the gland, on either side of the frenulum linguae. One or more join to form the major sublingual duct (larger sublingual duct, duct of Bartholin), which opens into the submandibular duct. [WP,unvetted]." [Wikipedia:Sublingual_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0004558
xref: FMA:59983
xref: MA:0002699
xref: SCTID:281000009
is_a: UBERON:0001837 ! duct of salivary gland
relationship: part_of UBERON:0001832
intersection_of: UBERON:0001837 ! duct of salivary gland
intersection_of: part_of UBERON:0001832 ! sublingual gland
relationship: channels_from UBERON:0001832 ! sublingual gland
relationship: part_of UBERON:0001832 ! sublingual gland
[Term]
id: UBERON:0001839
name: bony labyrinth
def: "A system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Bony_labyrinth]
comment: Ideally we would place a spatially disjoint from relationship to membranous labyrinth, but there are many parts in common. this should be resolved.
subset: uberon_slim
synonym: "labyrinthus osseus" RELATED LATIN [Wikipedia:Bony_labyrinth]
synonym: "osseous labyrinth" EXACT []
synonym: "osseus labyrinth" RELATED []
xref: AAO:0011078
xref: BTO:0004685
xref: EV:0100362
xref: FMA:60179
xref: http://upload.wikimedia.org/wikipedia/commons/2/22/Gray920.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray920.png/200px-Gray920.png
xref: MA:0000238
xref: ncithesaurus:Osseous_Labyrinth
xref: SCTID:279727008
xref: VHOG:0001219
xref: XAO:0000193
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001694 ! petrous part of temporal bone
relationship: part_of UBERON:0001846 ! internal ear
relationship: part_of UBERON:0004681 ! vestibular system
[Term]
id: UBERON:0001840
name: semicircular canal
def: "One of three half-circular, interconnected tubes located inside each ear[WP]. Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Semicircular_canal, ZFIN:curator]
comment: Note that MA divides this into osseous and duct. In FMA, this is systemically part of the bony labyrinth. Note this is an anatomical space in ZFA. The MA treatment has advantages for representing the neuroepithelium, which should not be part of bone. Also check duct vs canal
subset: uberon_slim
subset: vertebrate_core
synonym: "canalis semicircularis" RELATED LATIN [Wikipedia:Semicircular_canal]
synonym: "canalis semicircularis" RELATED []
synonym: "ductus semicirculares" RELATED PLURAL [BTO:0003383, FMA:71880, FMA:TA]
xref: AAO:0011098
xref: BTO:0003383
xref: EV:0100365
xref: FMA:60186
xref: GAID:776
xref: http://upload.wikimedia.org/wikipedia/commons/3/33/Balance_Disorder_Illustration_A.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Balance_Disorder_Illustration_A.png/200px-Balance_Disorder_Illustration_A.png
xref: MA:0000249
xref: MESH:A.09.246.631.663
xref: ncithesaurus:Semicircular_Canal
xref: SCTID:279757004
xref: TAO:0000431
xref: VHOG:0001144
xref: XAO:0000198
xref: ZFA:0000431
property_value: UBPROP:0000001 "Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string
is_a: UBERON:0000025 {source="GO"} ! tube
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003051 ! ear vesicle
relationship: part_of UBERON:0001846 {source="MA"} ! internal ear
relationship: part_of UBERON:0001849 {source="OG"} ! membranous labyrinth
[Term]
id: UBERON:0001841
name: anterior semicircular canal
def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Anterior_semicircular_canal, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior semicircular canals" RELATED []
synonym: "anterior semicircular duct" RELATED []
synonym: "canalis semircularis posterior" RELATED [AAO:0000058]
synonym: "rostral vertical semicircular canal" RELATED []
synonym: "superior semicircular canal" EXACT []
xref: AAO:0000058
xref: EHDAA2:0001959
xref: EHDAA:7802
xref: EMAPA:17299
xref: FMA:60187
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001207
xref: ncithesaurus:Superior_Semicircular_Canal
xref: SCTID:279764002
xref: TAO:0000314
xref: ZFA:0000314
property_value: UBPROP:0000001 "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from anterior semicircular canal primordium (TAO:0000469)[TAO]" xsd:string
is_a: UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001840 ! semicircular canal
[Term]
id: UBERON:0001842
name: posterior semicircular canal
def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Posterior_semicircular_canal, ZFIN:curator]
comment: Editor notes: verify AAO
subset: uberon_slim
subset: vertebrate_core
synonym: "canalis semicircularis posterior" RELATED LATIN [Wikipedia:Posterior_semicircular_canal]
synonym: "caudal vertical semicircular canal" RELATED []
synonym: "pars superior of labyrinth" RELATED [AAO:0000420]
synonym: "posterior semicircular canals" RELATED []
synonym: "posterior semicircular duct" RELATED []
xref: AAO:0000420
xref: EHDAA2:0001489
xref: EHDAA:7796
xref: EMAPA:17296
xref: FMA:60190
xref: http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001209
xref: ncithesaurus:Posterior_Semicircular_Canal
xref: SCTID:279762003
xref: TAO:0000262
xref: ZFA:0000262
property_value: UBPROP:0000001 "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from posterior semicircular canal primordium (TAO:0000412)[TAO]" xsd:string
is_a: UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001840 ! semicircular canal
[Term]
id: UBERON:0001843
name: lateral semicircular canal
def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Lateral_semicircular_canal, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "horizontal semicircular canal" RELATED []
synonym: "lateral semicircular canals" RELATED []
synonym: "lateral semicircular duct" RELATED []
xref: EHDAA2:0000920
xref: EHDAA:7790
xref: EMAPA:17821
xref: FMA:60193
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001208
xref: SCTID:279761005
xref: TAO:0000220
xref: ZFA:0000220
property_value: UBPROP:0000001 "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from lateral semicircular canal primordium (TAO:0000232)[TAO]" xsd:string
is_a: UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001840 ! semicircular canal
[Term]
id: UBERON:0001844
name: cochlea
def: "The cochlea is the auditory portion of the inner ear. Its core component is the Organ of Corti, the sensory organ of hearing, which is distributed along the partition separating fluid chambers in the coiled tapered tube of the cochlea. The name is from the Latin for snail, which is from the Greek kokhlias 'snail, screw,' from kokhlos 'spiral shell,' in reference to its coiled shape; the cochlea is coiled in most mammals, monotremes being the exceptions. [WP,unvetted]." [Wikipedia:Cochlea]
comment: The association with 'lagena' in frog and fish comes from HOG, although HOG is inconsistent here, associating lagena with XAO cochlea and ZFA cochlear duct. NBK53175 says: "In contrast, the ventrally located auditory chambers have undergone more extensive evolutionary modifications. The saccule and lagena are prominent auditory organs in fish but the saccule has a vestibular role in mammals and birds, and the lagena is absent in mammals. The primary au- ditory organ in mammals and birds is the cochlea, which has no known counterpart in amphibians and fish (Riley and Phillips, 2003)"
subset: uberon_slim
subset: vertebrate_core
synonym: "cochlear organ" RELATED [BTO:0000267]
synonym: "cochlear part of bony labyrinth" EXACT []
synonym: "lagena" EXACT SENSU [XAO:0000197]
xref: AAO:0000253
xref: BTO:0000267
xref: EFO:0000357
xref: EMAPA:17597
xref: EV:0100363
xref: FMA:60201
xref: GAID:724
xref: http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png
xref: MA:0000240
xref: MAT:0000144
xref: MESH:A.09.246.631.246
xref: MIAA:0000144
xref: ncithesaurus:Cochlea
xref: NIF_GrossAnatomy:birnlex_1190
xref: NIF_GrossAnatomy:birnlex_883
xref: OpenCyc:Mx4rvqfJmJwpEbGdrcN5Y29ycA
xref: SCTID:181187008
xref: TAO:0000374
xref: VHOG:0000691
xref: XAO:0000197
xref: ZFA:0000374
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001839 ! bony labyrinth
[Term]
id: UBERON:0001845
name: perilymph
def: "Transudate contained in the osseous labyrinth outside the membranous labyrinth.[FMA]" [FMA:FMA, Wikipedia:Perilymph]
subset: uberon_slim
subset: vertebrate_core
synonym: "liquor cotunnii" RELATED [Wikipedia:Perilymph]
synonym: "perilympha" RELATED [Wikipedia:Perilymph]
xref: FMA:60908
xref: GAID:1185
xref: MA:0002529
xref: MESH:A.12.207.571.678
xref: ncithesaurus:Perilymph
xref: TAO:0005413
xref: ZFA:0005413
is_a: UBERON:0006586 ! otolymph
relationship: part_of UBERON:0002278 ! perilymphatic space
relationship: surrounded_by UBERON:0001839 ! bony labyrinth
relationship: surrounds UBERON:0001849 {source="Wikipedia"} ! membranous labyrinth
[Term]
id: UBERON:0001846
name: internal ear
def: "Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "auris interna" RELATED [BTO:0000630]
synonym: "inner ear" EXACT []
synonym: "labyrinth" RELATED []
synonym: "otocyst" RELATED []
xref: AAO:0000238
xref: BTO:0000630
xref: EFO:0001363
xref: EHDAA2:0000831
xref: EHDAA:504
xref: EMAPA:16194
xref: EV:0100361
xref: FMA:60909
xref: GAID:871
xref: galen:InnerEar
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png
xref: MA:0000237
xref: MAT:0000145
xref: MESH:A.09.246.631
xref: MIAA:0000145
xref: ncithesaurus:Internal_Ear
xref: NIF_GrossAnatomy:birnlex_1196
xref: OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA
xref: SCTID:181189006
xref: TAO:0000217
xref: VHOG:0000284
xref: XAO:0000192
xref: ZFA:0000217
property_value: UBPROP:0000001 "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003051 {evidence="definitional"} ! ear vesicle
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0001847
name: lobule of pinna
def: "The earlobe is, in humans and many other animals, the soft lower part of the external ear. It is the lowermost portion of the human pinna, projecting below the antitragus. The earlobe is composed of tough areolar and adipose (fatty) connective tissues, lacking the firmness and elasticity of the rest of the pinna. Since the earlobe does not contain cartilage the earlobe has a large blood supply and may help to warm the ears and maintain balance but generally earlobes are not considered to have any major biological function. [WP,unvetted]." [Wikipedia:Ear_lobe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auricular lobule" EXACT []
synonym: "ear lobe" EXACT []
synonym: "ear lobule" RELATED []
synonym: "earlobe" EXACT []
synonym: "lobe of ear" EXACT []
synonym: "lobule of auricle" RELATED []
synonym: "lobule of auricle of ear" EXACT []
synonym: "lobulus auriculae" EXACT [FMA:60984, FMA:TA]
synonym: "pinna lobule" EXACT []
xref: FMA:60984
xref: MA:0002468
xref: ncithesaurus:Lobule_of_the_Auricle
xref: SCTID:362544006
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0001848
name: auricular cartilage
def: "cartilage of the pinna and much of the external ear canal." [http://medical-dictionary.thefreedictionary.com/auricular+cartilage]
synonym: "cartilage of pinna" EXACT [FMA:61013]
xref: FMA:61013
xref: MA:0001227
xref: SCTID:279627003
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0007844 ! cartilaginous element
relationship: part_of UBERON:0001757
intersection_of: UBERON:0007844 ! cartilaginous element
intersection_of: part_of UBERON:0001757 ! pinna
relationship: part_of UBERON:0001757 {source="FMA"} ! pinna
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0001849
name: membranous labyrinth
def: "Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth]
comment: inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now
subset: organ_slim
subset: uberon_slim
synonym: "labyrinthus membranaceus" RELATED LATIN [Wikipedia:Membranous_labyrinth]
xref: AAO:0011060
xref: EHDAA:4698
xref: EMAPA:17815
xref: EV:0100367
xref: FMA:61022
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray924.png/200px-Gray924.png
xref: MA:0000242
xref: ncithesaurus:Membranous_Labyrinth
xref: SCTID:263790009
xref: VHOG:0000729
xref: XAO:0000194
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0010113 {evidence="definitional"} ! future membranous labyrinth
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0001850
name: lacrimal duct
def: "Organ with organ cavity which connects the vestibule of the conjunctival sac to the nasal cavity. Examples: There are only two lacrimal ducts, the right and the left lacrimal ducts.[FMA]" [FMA:61063, Wikipedia:Lacrimal_canaliculi]
comment: todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal
subset: uberon_slim
synonym: "lacrimal caniculus" RELATED [Wikipedia:Lacrimal_duct]
synonym: "tear duct" RELATED [MA:0001295]
xref: EMAPA:19245
xref: FMA:61063
xref: MA:0001295
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001750 {source="FMA"} ! lacrimal apparatus
[Term]
id: UBERON:0001851
name: cortex
def: "Outermost layer of an organ[WP]." [Wikipedia:Cortex_(anatomy)]
comment: This class is used in a very general sense
subset: uberon_slim
xref: AAO:0010327
xref: EFO:0000383
xref: EHDAA:9344
xref: EMAPA:18427
xref: FMA:61109
xref: galen:Cortex
is_a: UBERON:0000064 ! organ part
relationship: surrounds UBERON:0000062 ! organ
[Term]
id: UBERON:0001852
name: endolymph
def: "Transudate contained within the membranous labyrinth.[FMA]" [FMA:61112, Wikipedia:Endolymph]
subset: uberon_slim
subset: vertebrate_core
synonym: "endolympha" RELATED LATIN [Wikipedia:Endolymph]
synonym: "endolympha" RELATED [Wikipedia:Endolymph]
synonym: "endolymphatic fluid" EXACT []
synonym: "Scarpa's fluid" RELATED [Wikipedia:Endolymph]
xref: FMA:61112
xref: GAID:1184
xref: http://upload.wikimedia.org/wikipedia/commons/c/c7/Cochlea-crosssection.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png
xref: MA:0002528
xref: MESH:A.12.207.571.324
xref: ncithesaurus:Endolymph
xref: TAO:0005414
xref: ZFA:0005414
is_a: UBERON:0006586 ! otolymph
relationship: surrounded_by UBERON:0001849 {source="Wikipedia"} ! membranous labyrinth
[Term]
id: UBERON:0001853
name: utricle of membranous labyrinth
def: "one of the two otolith organs located in the vertebrate inner ear. These use small stones and a viscous fluid to stimulate hair cells to detect motion and orientation. The utricle is larger than the saccule and is of an oblong form, compressed transversely, and occupies the upper and back part of the vestibule, lying in contact with the recessus ellipticus and the part below it. The utricle contains mechanoreceptors called hair cells that distinguish between degrees of tilting of the head, thanks to their apical cilia set-up. These are covered by otolith which, due to gravity, pull on the cilia and tilt them. Depending on whether the tilt is in the direction of the kinocilium or not, the resulting hair cell polarisation is excitatory (depolarising) or inhibitory (hyperpolarisation), respectively. This signal to the vestibular nerve (which takes it to the brainstem) does not adapt with time. The effect of this is that, for example, an individual lying down to sleep will continue to detect that they are lying down hours later when they awaken[WP]." [Wikipedia:Utricle_(ear)]
comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5; AAO has both utricle and utriculus; these are generally considered synonyms - e.g. http://www.fishbase.org/glossary/Glossary.php?q=utriculus
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "membranous labyrinth utricle" EXACT []
synonym: "utricle" EXACT []
synonym: "utriculus" EXACT [ZFA:0000700]
synonym: "utriculus (labyrinthus vestibularis)" EXACT []
xref: AAO:0000625
xref: AAO:0011109
xref: BTO:0001807
xref: EHDAA2:0002153
xref: EHDAA:4726
xref: EMAPA:17293
xref: EV:0100368
xref: FMA:61113
xref: MA:0000247
xref: ncithesaurus:Utricle
xref: SCTID:279817006
xref: TAO:0000700
xref: VHOG:0000289
xref: XAO:0000195
xref: ZFA:0000700
is_a: UBERON:0002518 ! otolith organ
[Term]
id: UBERON:0001854
name: saccule of membranous labyrinth
def: "A bed of sensory cells situated in the inner ear. The saccule translates head movements into neural impulses which the brain can interpret. The saccule is sensitive to linear translations of the head, specifically movements up and down (think about moving on an elevator). When the head moves vertically, the sensory cells of the saccule are disturbed and the neurons connected to them begin transmitting impulses to the brain. These impulses travel along the vestibular portion of the eighth cranial nerve to the vestibular nuclei in the brainstem. is the smaller of the two vestibular sacs. It is globular in form and lies in the recessus sphæricus near the opening of the scala vestibuli of the cochlea. Its cavity does not directly communicate with that of the utricle. The anterior part of the saccule exhibits an oval thickening, the macula acustica sacculi, or macula, to which are distributed the saccular filaments of the vestibular branch of the vestibulocochlear nerve, also known as the acoustic nerve or cranial nerve VIII[WP]." [Wikipedia:Saccule]
comment: XAO/AAO to be checked - see https://github.com/seger/aao/issues/5
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "membranous labyrinth saccule" EXACT []
synonym: "saccule" EXACT []
synonym: "sacculus" EXACT [ZFA:0000428]
synonym: "sacculus" RELATED LATIN [Wikipedia:Saccule]
synonym: "sacculus (labyrinthus vestibularis)" EXACT []
xref: AAO:0000550
xref: BTO:0001805
xref: EHDAA2:0001769
xref: EHDAA:4712
xref: EMAPA:17290
xref: EV:0100369
xref: FMA:61116
xref: http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg
xref: MA:0000246
xref: ncithesaurus:Saccule
xref: SCTID:279827000
xref: TAO:0000428
xref: VHOG:0000374
xref: XAO:0000196
xref: ZFA:0000428
is_a: UBERON:0002518 ! otolith organ
[Term]
id: UBERON:0001855
name: cochlear duct of membranous labyrinth
def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Houses the organ of Corti[WP]." [Wikipedia:Cochlear_duct]
comment: TODO: check cochlear duct vs cochlear aqueduct vs scala media
subset: uberon_slim
synonym: "cochlea duct" EXACT [NIF_GrossAnatomy:birnlex_2562]
synonym: "cochlear aqueduct" RELATED []
synonym: "cochlear duct" EXACT []
synonym: "ductus cochlearis" RELATED LATIN [Wikipedia:Cochlear_duct]
synonym: "ductus cochlearis" RELATED [BTO:0001692]
synonym: "membranous cochlea" RELATED [BTO:0001692]
synonym: "Reissner's canal" EXACT []
synonym: "reissners canal" EXACT [NIF_GrossAnatomy:birnlex_2562]
synonym: "scala media" RELATED [Wikipedia:Cochlear_duct]
synonym: "scala medias" EXACT [NIF_GrossAnatomy:birnlex_2562]
synonym: "scala of Loewenberg" RELATED [BTO:0001692]
xref: BTO:0001692
xref: EHDAA2:0000262
xref: EHDAA:4718
xref: EMAPA:17598
xref: FMA:61119
xref: GAID:874
xref: http://upload.wikimedia.org/wikipedia/commons/b/bc/Gray928.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Gray928.png/200px-Gray928.png
xref: MA:0000243
xref: MESH:A.09.246.631.246.292
xref: ncithesaurus:Cochlear_Duct
xref: NIF_GrossAnatomy:birnlex_2562
xref: SCTID:279849006
xref: VHOG:0000507
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0001849 ! membranous labyrinth
relationship: part_of UBERON:0002499 ! cochlear labyrinth
[Term]
id: UBERON:0001856
name: semicircular duct
def: "any of the three loop-shaped membranous inner tubular parts of the semicircular canals that are about one-fourth the diameter of the corresponding outer bony canals, that communicate at each end with the utricle, and that have near one end an expanded ampulla containing an area of sensory epithelium" [http://dictionary.reference.com/browse/semicircular+duct]
comment: TODO - check canal vs duct. see http://en.wikipedia.org/wiki/File:Gray927.png
synonym: "ductus semicirculares" RELATED PLURAL [FMA:71880, FMA:TA]
synonym: "membranous semicircular canal" RELATED [MA:0000251]
xref: FMA:61122
xref: MA:0000251
xref: ncithesaurus:Semicircular_Duct
xref: SCTID:279833009
xref: VHOG:0000238
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal
relationship: part_of UBERON:0001862 {source="FMA", source="MA"} ! vestibular labyrinth
[Term]
id: UBERON:0001857
name: anterior semicircular duct
comment: This class was created automatically from a combination of ontologies
xref: FMA:61123
xref: MA:0001211
xref: SCTID:279836001
xref: VHOG:0000246
is_a: UBERON:0001856 ! semicircular duct
relationship: part_of UBERON:0001841 ! anterior semicircular canal
[Term]
id: UBERON:0001858
name: posterior semicircular duct
def: "The semicircular canals are three half-circular, interconnected tubes located inside each ear. The three canals are the horizontal semicircular canal (also known as the lateral semicircular canal), superior semicircular canal (also known as the anterior semicircular canal), and the posterior semicircular canal. The canals are aligned approximately orthogonally to one another. The horizontal canal is aligned roughly horizontally in the head. The superior and anterior canals are aligned roughly at a 45 degree angle to a vertical plane drawn from the nose to the back of the skull. Thus, the horizontal canal detects horizontal head movements (such as when doing a pirouette), while the superior and posterior canals detect vertical head movements. Each canal is filled with a fluid called endolymph and contains a motion sensor with little hairs whose ends are embedded in a gelatinous structure called the cupula. As the skull twists in any direction, the endolymph is thrown into different sections of the canals. The cilia detect when the endolymph rushes past, and a signal is then sent to the brain. The semicircular canals are a component of the Labyrinth. Among species of mammals, the size of the semicircular canals is correlated with their type of locomotion. Specifically, species that are agile and have fast, jerky locomotion have larger canals relative to their body size than those that move more cautiously. [WP,unvetted]." [Wikipedia:Semicircular_canal]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:61126
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Balance_Disorder_Illustration_A.png/200px-Balance_Disorder_Illustration_A.png
xref: MA:0001214
xref: SCTID:279835002
xref: VHOG:0000248
is_a: UBERON:0001856 ! semicircular duct
relationship: part_of UBERON:0001842 ! posterior semicircular canal
[Term]
id: UBERON:0001859
name: lateral semicircular duct
def: "The lateral or horizontal canal (external semicircular canal) is the shortest of the three canals. Movement of fluid within this canal corresponds to rotation of the head around a vertical axis (i.e. the neck). [WP,unvetted]." [Wikipedia:Lateral_semicircular_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:61129
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001213
xref: SCTID:279834003
xref: VHOG:0000247
is_a: UBERON:0001856 ! semicircular duct
relationship: part_of UBERON:0001843 ! lateral semicircular canal
[Term]
id: UBERON:0001860
name: endolymphatic duct
def: "From the posterior wall of the saccule a canal, the endolymphatic duct, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. [WP,unvetted]." [Wikipedia:Endolymphatic_duct]
subset: uberon_slim
subset: vertebrate_core
synonym: "ductus endolymphaticus" EXACT [AAO:0000135]
synonym: "ductus endolymphaticus" RELATED LATIN [Wikipedia:Endolymphatic_duct]
xref: AAO:0000135
xref: EMAPA:18580
xref: FMA:61246
xref: GAID:886
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray924.png/200px-Gray924.png
xref: MA:0001187
xref: MESH:A.09.246.631.909.957.360
xref: SCTID:362567008
xref: TAO:0002194
xref: ZFA:0001705
property_value: UBPROP:0000001 "Duct that is part of the inner ear and connects to the semicircular canals ending in a pouch.[TAO]" xsd:string
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0001861
name: ductus reuniens
comment: This class was created automatically from a combination of ontologies
xref: EMAPA:17287
xref: FMA:61252
xref: MA:0000244
xref: SCTID:279805009
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0001862
name: vestibular labyrinth
def: "The part of the membranous labyrinth that includes the utricle and saccule lodged within the vestibule and the semicircular ducts lodged eccentrically in the corresponding canals." [BTO:0001856]
synonym: "labyrinthus vestibularis" RELATED [BTO:0001856]
synonym: "vestibular apparatus" RELATED []
xref: BTO:0001856
xref: EHDAA2:0000832
xref: EMAPA:17286
xref: FMA:61255
xref: MA:0000245
xref: ncithesaurus:Vestibular_Labyrinth
xref: SCTID:181188003
xref: XAO:0004145
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0001863
name: scala vestibuli
def: "Scala vestibuli is a perilymph filled cavity inside the cochlea of the inner ear. It is separated from the scala media by Reissner's membrane and extends from the oval window to the helicotrema where it joins scala tympani. [WP,unvetted]." [Wikipedia:Scala_vestibuli]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:61269
xref: http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/0/0c/Cochlea-crosssection.png/250px-Cochlea-crosssection.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png
xref: MA:0001206
xref: SCTID:362578000
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0002278 ! perilymphatic space
[Term]
id: UBERON:0001864
name: scala tympani
def: "Scala tympani is one of the perilymph-filled cavities in the cochlear labyrinth. It is separated from the scala media by the basilar membrane, and it extends from the round window to the helicotrema, where it continues as scala vestibuli. The purpose of the perilymph-filled scala tympani and scala vestibuli is to transduce the movement of air that causes the tympanic membrane and the ossicles to vibrate, to movement of liquid and the basilar membrane. This movement is conveyed to the organ of Corti inside the scala media, composed of hair cells attached to the basilar membrane and their stereocilia embedded in the tectorial membrane. The movement of the basilar membrane compared to the tectorial membrane causes the sterocilia to bend. They then depolarise and send impulses to the brain via the cochlear nerve. This produces the sensation of sound. [WP,unvetted]." [Wikipedia:Scala_tympani]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:61272
xref: GAID:879
xref: http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001205
xref: MESH:A.09.246.631.246.848
xref: SCTID:362579008
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0002278 ! perilymphatic space
[Term]
id: UBERON:0001865
name: cartilaginous external acoustic tube
comment: This class was created automatically from a combination of ontologies
synonym: "cartilaginous external acoustic meatus" EXACT []
synonym: "cartilaginous part of external acoustic meatus" EXACT []
synonym: "external acoustic meatus cartilaginous part" EXACT []
synonym: "meatus acusticus externus cartilagineus" EXACT [FMA:61289, FMA:TA]
xref: FMA:61289
xref: MA:0001234
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001352 ! external acoustic meatus
[Term]
id: UBERON:0001866
name: sebum
def: "The sebaceous glands are microscopic glands in the skin which secrete an oily/waxy matter, called sebum, to lubricate the skin and hair of animals. [WP,unvetted]." [Wikipedia:Sebum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001981
xref: ENVO:02000037
xref: FMA:61304
xref: GAID:1168
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/HairFollicle.png/200px-HairFollicle.png
xref: MA:0002538
xref: MESH:A.12.200.702
xref: ncithesaurus:Sebum
is_a: UBERON:0000456 ! bodily secretion
[Term]
id: UBERON:0001867
name: cartilage of external ear
def: "A cartilage that is part of a external ear [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "auricular region cartilage" EXACT [OBOL:automatic]
synonym: "auricular region of head cartilage" EXACT [OBOL:automatic]
synonym: "cartilage of auricular region" EXACT [OBOL:automatic]
synonym: "cartilage of auricular region of head" EXACT [OBOL:automatic]
synonym: "cartilage of outer ear" EXACT [OBOL:automatic]
synonym: "external ear cartilage" EXACT []
synonym: "outer ear cartilage" EXACT [OBOL:automatic]
xref: FMA:61339
xref: GAID:103
xref: MA:0001886
xref: MESH:A.02.165.207
xref: ncithesaurus:External_Ear_Cartilage
is_a: UBERON:0001996 ! elastic cartilage tissue
is_a: UBERON:0003566 ! head connective tissue
relationship: part_of UBERON:0001691
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0001691 ! external ear
relationship: part_of UBERON:0001691 ! external ear
[Term]
id: UBERON:0001868
name: skin of chest
def: "A zone of skin that is part of a chest [Obol]." [OBOL:automatic]
comment: check FMA:61415
synonym: "anterior thoracic region zone of skin" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax zone of skin" EXACT [OBOL:automatic]
synonym: "chest skin" EXACT []
synonym: "chest zone of skin" EXACT [OBOL:automatic]
synonym: "front of thorax zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of anterior chest" EXACT [FMA:61416]
synonym: "zone of skin of anterior part of thorax" EXACT [FMA:61416]
synonym: "zone of skin of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "zone of skin of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "zone of skin of chest" EXACT [OBOL:automatic]
synonym: "zone of skin of front of thorax" EXACT [OBOL:automatic]
xref: FMA:61416
xref: FMA:61417
xref: MA:0000553
xref: SCTID:181496004
is_a: UBERON:0001418 ! skin of thorax
relationship: part_of UBERON:0001443
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0001869
name: cerebral hemisphere
def: "One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter.[FMA]" [FMA:FMA, Wikipedia:Cerebral_hemisphere]
subset: uberon_slim
synonym: "hemispherium cerebri" RELATED LATIN [Wikipedia:Cerebral_hemisphere]
xref: AAO:0010480
xref: BTO:0000231
xref: EFO:0002521
xref: FMA:61817
xref: galen:CerebralHemisphere
xref: http://upload.wikimedia.org/wikipedia/commons/9/92/Hemispheres.png
xref: MA:0000133
xref: ncithesaurus:Cerebral_Hemisphere
xref: NIF_GrossAnatomy:birnlex_1042
xref: OpenCyc:Mx4rvigx5ZwpEbGdrcN5Y29ycA
xref: SCTID:278251007
xref: VHOG:0001639
property_value: UBPROP:0000001 "Part of the telencephalon consisting of either of the two smooth, elongated halves of the cerebrum.[AAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0001870
name: frontal cortex
def: "Frontal lobe is the anterior-most of five lobes of the cerebral hemisphere. It is bounded by the central sulcus on its posterior border and by the longitudinal cerebral fissure on its medial border." [Wikipedia:Frontal_lobe]
comment: Editor note: Many species don't have lobes but they do have frontal cortex. Lobe isn't a really well defined term though [MM]
subset: uberon_slim
synonym: "frontal lobe" EXACT [FMA:61824]
synonym: "frontal region" EXACT []
synonym: "lobus frontalis" RELATED LATIN [Wikipedia:Frontal_lobe]
synonym: "regio frontalis" EXACT [FMA:61824, FMA:TA]
xref: BM:Tel-Cx-FR
xref: BTO:0000484
xref: EFO:0000913
xref: EV:0100167
xref: FMA:61824
xref: GAID:674
xref: http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray729.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray729.png/200px-Gray729.png
xref: MA:0000905
xref: MAT:0000505
xref: MESH:A.08.186.211.730.885.213.270
xref: ncithesaurus:Frontal_Lobe
xref: NIF_GrossAnatomy:birnlex_928
xref: NIF_GrossAnatomy:nlx_anat_20090601
xref: OpenCyc:Mx4rv3OJ8JwpEbGdrcN5Y29ycA
xref: SCTID:180920004
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: adjacent_to UBERON:0001871 ! temporal lobe
relationship: adjacent_to UBERON:0001872 ! parietal lobe
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0001871
name: temporal lobe
def: "Temporal lobe is the ventrolateral lobe of five lobes comprising each cerebral hemisphere. It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe." [Wikipedia:Temporal_lobe]
subset: uberon_slim
synonym: "lobus temporalis" RELATED LATIN [Wikipedia:Temporal_lobe]
synonym: "temporal cortex" EXACT []
synonym: "temporal neocortex" EXACT [DHB:TCx]
xref: BM:Tel-Cx-Te
xref: BTO:0001355
xref: EFO:0000917
xref: EMAPA:18797
xref: EV:0100169
xref: FMA:61825
xref: GAID:635
xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Gray730.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Gray730.png/200px-Gray730.png
xref: MA:0000941
xref: MAT:0000508
xref: MESH:A.08.186.211.730.885.213.863
xref: ncithesaurus:Temporal_Lobe
xref: NIF_GrossAnatomy:birnlex_1160
xref: OpenCyc:Mx4rwQLi-ZwpEbGdrcN5Y29ycA
xref: SCTID:180921000
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0001872
name: parietal lobe
def: "Parietal lobe is the one of five lobes of the cerebral hemisphere which occupies the dorsal-posterior portion of the hemisphere. It is bounded by the central sulcus on its anterior border and and by the longitudinal cerebral fissure on its medial border. Posteriorly it shares an arbitrary border with the occipital lobe." [Wikipedia:Parietal_lobe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lobus parietalis" RELATED LATIN [Wikipedia:Parietal_lobe]
synonym: "parietal cortex" EXACT []
synonym: "parietal neocortex" EXACT [DHB:PCx]
synonym: "parietal region" EXACT []
synonym: "regio parietalis" EXACT [FMA:61826, FMA:TA]
xref: BTO:0001001
xref: EFO:0000914
xref: EV:0100168
xref: FMA:61826
xref: GAID:680
xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray726_parietal_lobe.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b2/Gray726_parietal_lobe.png/200px-Gray726_parietal_lobe.png
xref: MA:0000916
xref: MAT:0000506
xref: MESH:A.08.186.211.730.885.213.670
xref: ncithesaurus:Parietal_Lobe_of_the_Brain
xref: NIF_GrossAnatomy:birnlex_1148
xref: OpenCyc:Mx4rvg-typwpEbGdrcN5Y29ycA
xref: SCTID:180922007
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: adjacent_to UBERON:0001871 ! temporal lobe
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0001873
name: caudate nucleus
def: "Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent." [Wikipedia:Caudate_nucleus]
comment: CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)
subset: uberon_slim
synonym: "caudatus" EXACT []
synonym: "nucleus caudatus" RELATED [BTO:0000211]
synonym: "nucleus caudatus" RELATED LATIN [Wikipedia:Caudate_nucleus]
xref: BM:Tel-CA
xref: BTO:0000211
xref: EFO:0000907
xref: EMAPA:18207
xref: EV:0100185
xref: FMA:61833
xref: GAID:670
xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg
xref: MA:0000894
xref: MAT:0000513
xref: MESH:A.08.186.211.730.885.105.487.550.184
xref: ncithesaurus:Caudate_Nucleus
xref: NIF_GrossAnatomy:birnlex_1373
xref: OpenCyc:Mx4rvvyAjJwpEbGdrcN5Y29ycA
xref: SCTID:279297002
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: develops_from UBERON:0010122 {evidence="definitional"} ! future caudate nucleus
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0002435 ! striatum
relationship: part_of UBERON:0005383 ! caudate-putamen
[Term]
id: UBERON:0001874
name: putamen
def: "Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease." [Wikipedia:Putamen]
comment: CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)
subset: uberon_slim
synonym: "nucleus putamen" EXACT []
xref: BM:Tel-Pu
xref: EV:0100187
xref: FMA:61834
xref: GAID:671
xref: http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/BrainCaudatePutamen.svg/200px-BrainCaudatePutamen.svg.png
xref: MA:0000895
xref: MESH:A.08.186.211.730.885.105.487.550.784
xref: ncithesaurus:Putamen
xref: NIF_GrossAnatomy:birnlex_809
xref: SCTID:281512002
xref: VHOG:0001456
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0001869 {source="FMA"} ! cerebral hemisphere
relationship: part_of UBERON:0002435 ! striatum
relationship: part_of UBERON:0005383 ! caudate-putamen
[Term]
id: UBERON:0001875
name: globus pallidus
def: "Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle[NIF]. Nucleus of brain which is located medially to the putamen and laterally to the internal capsule[FMA]." [FMA:61835, NIF_GrossAnatomy:birnlex_1234, Wikipedia:Globus_pallidus]
comment: BTO and MA are inconsistent w.r.t striatum and pallidum being non-overlapping as in ABA. Note that we have pallidum as part_of basal gangion, so we can make the direct link to basal ganglion. ISBN10:1588900649 says: ... a derivative of the diencephalon, seperates as a result of growing fibers of theinternal capsule and is finally displaced into telencephalon. only a small medial remnannt remains, the entopeduncular nucleus. The globus pallidus should be regarded as part of the subthalamus
subset: uberon_slim
synonym: "pale body" EXACT [NIF_GrossAnatomy:birnlex_1234]
synonym: "paleostriatum" EXACT [Wikipedia:Globus_pallidus]
synonym: "pallidium" RELATED [Wikipedia:Globus_pallidus]
synonym: "pallidum" RELATED [GO:0021759, NIF_GrossAnatomy:birnlex_1234, Wikipedia:Globus_pallidus]
xref: BTO:0002246
xref: EFO:0000905
xref: EV:0100188
xref: FMA:61835
xref: GAID:668
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif
xref: MA:0000890
xref: MAT:0000510
xref: MESH:A.08.186.211.730.885.105.487.397
xref: ncithesaurus:Globus_Pallidus
xref: NIF_GrossAnatomy:birnlex_1234
xref: SCTID:362361005
is_a: UBERON:0009663 ! telencephalic nucleus
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from_part_of UBERON:0001894 {source="GO", source="ISBN10:1588900649"} ! diencephalon
relationship: overlaps UBERON:0002263 {source="BTO-weakened"} ! lentiform nucleus
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0002420 {source="NIF_GrossAnatomy"} ! basal ganglion
relationship: part_of UBERON:0006514 {source="MA"} ! pallidum
[Term]
id: UBERON:0001876
name: amygdala
def: "Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe[FMA]" [FMA:61841, Wikipedia:Amygdala]
comment: AO notes: MA and FMA differ on relationship to basal ganglion. The FMA text def suggests a subdivision, but it is classified as a subtype
subset: uberon_slim
synonym: "amygdaloid area" RELATED []
synonym: "amygdaloid body" EXACT []
synonym: "amygdaloid complex" EXACT [NIF_GrossAnatomy:birnlex_1241]
synonym: "amygdaloid nuclear complex" EXACT []
synonym: "amygdaloid nuclear group" RELATED [BTO:0001042]
synonym: "amygdaloid nuclear groups" EXACT []
synonym: "archistriatum" EXACT []
synonym: "corpus amygdaloideum" RELATED [BTO:0001042]
synonym: "corpus amygdaloideum" RELATED LATIN [Wikipedia:Amygdala]
synonym: "nucleus amygdalae" RELATED [BTO:0001042]
xref: BM:Tel-Am
xref: BTO:0001042
xref: EFO:0000252
xref: EV:0100189
xref: EV:0100190
xref: FMA:61841
xref: GAID:616
xref: http://upload.wikimedia.org/wikipedia/commons/8/8b/Amyg.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Amyg.png/200px-Amyg.png
xref: MA:0000887
xref: MAT:0000289
xref: MESH:A.08.186.211.577.090
xref: MIAA:0000289
xref: ncithesaurus:Amygdala
xref: NIF_GrossAnatomy:birnlex_1241
xref: OpenCyc:Mx4rwJC_2ZwpEbGdrcN5Y29ycA
xref: VHOG:0001277
is_a: UBERON:0002420 {source="FMA"} ! basal ganglion
relationship: part_of UBERON:0000349 {source="FMA"} ! limbic system
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0001871 {source="BTO"} ! temporal lobe
[Term]
id: UBERON:0001877
name: medial septal nucleus
comment: This class was created automatically from a combination of ontologies
synonym: "medial parolfactory nucleus" EXACT []
synonym: "medial septum" NARROW [NIF_GrossAnatomy:birnlex_1668]
xref: ABA:MS
xref: BM:Tel-Spt-SMN
xref: BTO:0002446
xref: FMA:61879
xref: MA:0000935
xref: NIF_GrossAnatomy:birnlex_1668
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001878
name: septofimbrial nucleus
comment: This class was created automatically from a combination of ontologies
synonym: "nucleus septofibrialis" EXACT [NIF_GrossAnatomy:birnlex_730]
synonym: "scattered nucleus of the septum" EXACT []
xref: ABA:SF
xref: BM:SFN
xref: FMA:61881
xref: MA:0000938
xref: NIF_GrossAnatomy:birnlex_730
property_value: "spatially_disjoint_from" UBERON:0002667
property_value: "spatially_disjoint_from" UBERON:0007630
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001879
name: nucleus of diagonal band
comment: This class was created automatically from a combination of ontologies
synonym: "diagonal band nucleus" EXACT []
synonym: "nucleus of the diagonal band of broca" EXACT []
synonym: "olfactory area (roberts)" EXACT []
xref: ABA:NDB
xref: EHDAA2:0004708
xref: FMA:61882
xref: MA:0000936
xref: ncithesaurus:Nucleus_of_Diagonal_Band
xref: NIF_GrossAnatomy:birnlex_719
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0002663 {source="FMA"} ! septal nuclear complex
relationship: part_of UBERON:0007629 {source="MA"} ! medial septal complex
[Term]
id: UBERON:0001880
name: bed nucleus of stria terminalis
def: "A brain structure in the forebrain wrapped around the stria terminalis. It's largest extent can be found around the crossing of the anterior commissure[INCF]." [INCF:Seattle_mtg_2010, Wikipedia:Stria_terminalis#Bed_nucleus_of_the_stria_terminalis]
synonym: "bed nucleus of the stria terminalis" EXACT [NIF_GrossAnatomy:birnlex_724]
synonym: "bed nucleus stria terminalis (johnson)" EXACT [NIF_GrossAnatomy:birnlex_724]
synonym: "BST" BROAD [INCF:Seattle_mtg_2010]
synonym: "intercalate nucleus of stria terminalis" EXACT []
synonym: "interstitial nucleus of stria terminalis" EXACT [NIF_GrossAnatomy:birnlex_724]
synonym: "nuclei of stria terminalis" EXACT []
synonym: "nucleus of stria terminalis" EXACT [FMA:61884]
synonym: "nucleus striae terminalis" EXACT [FMA:61884, FMA:TA]
synonym: "stria terminalis nucleus" EXACT []
xref: ABA:BST
xref: BM:BNST
xref: BTO:0002698
xref: EFO:0001971
xref: FMA:61884
xref: MA:0000925
xref: NIF_GrossAnatomy:birnlex_724
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0002663 {source="FMA"} ! septal nuclear complex
relationship: surrounds UBERON:0003029 ! stria terminalis
[Term]
id: UBERON:0001881
name: island of calleja
def: "The islands of Calleja (IC, ISC, or IClj) are a group of neural granule cells located within the ventral striatum in the brains of most animals. This region of the brain is part of the limbic system, where it aids in the reinforcing effects of reward-like activities. Within most species, the islands are specifically located within the olfactory tubercle; however, in primates these islands are located within the nucleus accumbens, the reward center of the brain, since the olfactory tubercle has practically disappeared in the brains of primates. Both of these structures have been implicated in the processing of incentives as well as addictions to drugs. Projections to and from the islands supplement this knowledge with their involvement in the reward pathways for both cocaine and amphetamines. [WP,unvetted]." [Wikipedia:Islands_of_Calleja]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "calleja island" EXACT []
synonym: "insulae olfactoriae, insula callejae" RELATED LATIN [Wikipedia:Islands_of_Calleja]
synonym: "islands of calleja" EXACT []
xref: ABA:isl
xref: BM:Tel-ISC
xref: FMA:61888
xref: GAID:632
xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Islands_of_Calleja_Rat.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Islands_of_Calleja_Rat.jpg/200px-Islands_of_Calleja_Rat.jpg
xref: MA:0000977
xref: MESH:A.08.186.211.577.699.400
xref: NIF_GrossAnatomy:birnlex_1113
is_a: UBERON:0009663 ! telencephalic nucleus
disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon
relationship: part_of UBERON:0001883 ! olfactory tubercle
[Term]
id: UBERON:0001882
name: nucleus accumbens
def: "a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia[GO]." [GO:0021768, Wikipedia:Nucleus_accumbens]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "accumbens nucleus" EXACT []
synonym: "colliculus of caudate nucleus" EXACT []
synonym: "nucleus accumbens septi" EXACT []
synonym: "nucleus accumbens septi" RELATED LATIN [Wikipedia:Nucleus_accumbens]
xref: ABA:ACB
xref: BM:Ac
xref: BTO:0001862
xref: EFO:0000906
xref: EHDAA2:0004707
xref: FMA:61889
xref: GAID:672
xref: http://upload.wikimedia.org/wikipedia/commons/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg/200px-Circuit_du_syst%C3%A8me_de_recompense.jpg
xref: MA:0000892
xref: MAT:0000512
xref: MESH:A.08.186.211.730.885.105.683
xref: ncithesaurus:Accumbens_Nucleus
xref: NIF_GrossAnatomy:birnlex_727
xref: SCTID:427667007
property_value: "spatially_disjoint_from" UBERON:0001883
is_a: UBERON:0009663 ! telencephalic nucleus
disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon
relationship: part_of UBERON:0000349 {source="FMA", source="GO"} ! limbic system
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0005403 {source="MA"} ! ventral striatum
[Term]
id: UBERON:0001883
name: olfactory tubercle
def: "Subdivision of telencephalon which is a region on the ventro-medial aspect of the telencephalon penetrated by numerous blood vessels. It is bounded by the optic tract posteriorly and the olfactory trigone anteriorly." [FMA:61891, Wikipedia:Anterior_perforated_substance]
comment: AO notes: NIF has separate classes for exact syns in FMA
subset: uberon_slim
synonym: "anterior perforated area" EXACT [FMA:61891]
synonym: "anterior perforated space" EXACT [FMA:61891]
synonym: "anterior perforated substance" EXACT [FMA:61891]
synonym: "olfactory area (Mai)" EXACT [FMA:61891]
synonym: "substantia perforata anterior" RELATED LATIN [Wikipedia:Anterior_perforated_substance]
synonym: "tuberculum olfactorium" EXACT [FMA:61891, FMA:TA]
xref: ABA:OT
xref: BM:Tel-OLT
xref: BTO:0001869
xref: EHDAA2:0004701
xref: EV:0100177
xref: FMA:61891
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: MA:0000976
xref: NIF_GrossAnatomy:birnlex_1096
xref: NIF_GrossAnatomy:nlx_anat_1005037
xref: SCTID:369108006
xref: VHOG:0001625
property_value: "spatially_disjoint_from" UBERON:0001882
is_a: UBERON:0004732 ! segmental subdivision of nervous system
is_a: UBERON:0005813 {source="FMA"} ! tubercle
is_a: UBERON:0011300 ! gray matter of telencephalon
disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon
relationship: part_of UBERON:0001869 {source="FMA"} ! cerebral hemisphere
relationship: part_of UBERON:0002894 {source="EHDAA2-inferred", source="MA"} ! olfactory cortex
relationship: part_of UBERON:0005401 {source="BTO"} ! cerebral grey matter
[Term]
id: UBERON:0001884
name: phrenic nerve
def: "The phrenic nerve arises from the third, fourth, and fifth cervical spinal nerves (C3-C5) in humans. [WP,unvetted]." [Wikipedia:Phrenic_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "diaphragmatic nerve" RELATED [BTO:0001063]
synonym: "nervus phrenicus" RELATED [BTO:0001063]
synonym: "nervus phrenicus" RELATED LATIN [Wikipedia:Phrenic_nerve]
synonym: "phrenic" RELATED [BTO:0001063]
xref: BTO:0001063
xref: EHDAA:4677
xref: EMAPA:17813
xref: FMA:6191
xref: GAID:848
xref: http://upload.wikimedia.org/wikipedia/commons/3/3c/Gray806.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Gray806.png/200px-Gray806.png
xref: MA:0001170
xref: MESH:A.08.800.800.720.150.700
xref: ncithesaurus:Phrenic_Nerve
xref: OpenCyc:Mx4rvtmdUJwpEbGdrcN5Y29ycA
xref: SCTID:280344009
xref: VHOG:0000728
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003443 ! thoracic cavity nerve
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0001885
name: dentate gyrus of hippocampal formation
def: "The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus[GO]." [Wikipedia:Dentate_gyrus]
comment: BTO says dentate gyrus = fascia dentata + hilus. Note that GO classifies dentate gyrus development under hippocampus development
subset: uberon_slim
synonym: "area dentata" EXACT []
synonym: "dentate gyrus" EXACT []
synonym: "fascia dentata" NARROW []
synonym: "gyrus dentatus" RELATED LATIN [Wikipedia:Dentate_gyrus]
synonym: "gyrus dentatus" RELATED [BTO:0002496]
synonym: "hippocampal dentate gyrus" RELATED [BTO:0002496]
xref: ABA:DG
xref: BM:Tel-DG
xref: BTO:0002496
xref: BTO:0002615
xref: EFO:0001366
xref: EMAPA:19037
xref: FMA:61922
xref: GAID:624
xref: http://upload.wikimedia.org/wikipedia/commons/a/ab/HippocampalRegions.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/HippocampalRegions.jpg/200px-HippocampalRegions.jpg
xref: MA:0000190
xref: MESH:A.08.186.211.577.405.200
xref: ncithesaurus:Dentate_Gyrus
xref: NIF_GrossAnatomy:birnlex_1178
xref: SCTID:279211002
property_value: "spatially_disjoint_from" UBERON:0001954
property_value: "spatially_disjoint_from" UBERON:0001954
property_value: "spatially_disjoint_from" UBERON:0002601
is_a: UBERON:0000200 {source="FMA"} ! gyrus
relationship: part_of UBERON:0002421 {source="MA"} ! hippocampal formation
[Term]
id: UBERON:0001886
name: choroid plexus
def: "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier[?]. Fringe of the tela choroidea of the brain ventricles[MP]. The choroid plexus is the area on the ventricles of the brain where cerebrospinal fluid (CSF) is produced by modified ependymal cells[WP]." [MP:0000820, Wikipedia:Choroid_plexus, ZFIN:curator]
comment: TODO - check relationship to ventricle. Check subclass - ZFA says vasculature. Note that FMA:61934 (choroid plexus of cerebral hemisphere) has exact synonym 'choroid plexus' but it is not clear that this belongs here, as the fourth ventricle is not in the cerbral hemisphere
subset: uberon_slim
subset: vertebrate_core
synonym: "chorioid plexus" EXACT [FMA:61934]
synonym: "plexus choroideus" EXACT [FMA:61934, FMA:TA]
synonym: "plexus choroideus" RELATED LATIN [Wikipedia:Choroid_plexus]
xref: BTO:0000258
xref: EFO:0001915
xref: FMA:61934
xref: GAID:607
xref: http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray708.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Gray708.svg/200px-Gray708.svg.png
xref: MA:0000823
xref: MESH:A.08.186.211.276.298
xref: ncithesaurus:Choroid_Plexus
xref: SCTID:264450003
xref: TAO:0001443
xref: VHOG:0001377
xref: XAO:0004176
xref: ZFA:0001443
property_value: UBPROP:0000001 "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier.[TAO]" xsd:string
is_a: UBERON:0005284 ! brain vasculature
is_a: UBERON:0005629 ! vascular plexus
relationship: part_of UBERON:0004086 ! brain ventricle
[Term]
id: UBERON:0001887
name: internal capsule
def: "Internal capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The internal capsule is a major set of fiber bundles lateral to the thalamus and caudate nucleus and medial to the putamen and globus pallidus. It projects dorsally to the white matter underlying the cerebral cortex." [Wikipedia:Internal_capsule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "capsula interna" RELATED LATIN [Wikipedia:Internal_capsule]
synonym: "internal capsule radiations" EXACT []
xref: BM:IC
xref: EMAPA:18206
xref: FMA:61950
xref: GAID:685
xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg
xref: MA:0002748
xref: MESH:A.08.186.211.730.885.435
xref: ncithesaurus:Internal_Capsule
xref: NIF_GrossAnatomy:birnlex_1659
is_a: UBERON:0002437 ! cerebral white matter
relationship: part_of UBERON:0001869 ! cerebral hemisphere
[Term]
id: UBERON:0001888
name: lateral olfactory stria
def: "The olfactory tract is a narrow white band, triangular on coronal section, the apex being directed upward. It lies in the olfactory sulcus on the inferior surface of the frontal lobe, and divides posteriorly into two striæ, a medial and a lateral. The lateral olfactory stria is directed across the lateral part of the anterior perforated substance and then bends abruptly medialward toward the uncus of the hippocampal gyrus. The medial olfactory stria turns medialward behind the parolfactory area and ends in the subcallosal gyrus; in some cases a small intermediate stria is seen running backward to the anterior perforated substance. [WP,unvetted]." [Wikipedia:Lateral_olfactory_stria]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "lateral olfactory tract" EXACT []
synonym: "stria olfactoria lateralis" RELATED LATIN [Wikipedia:Lateral_olfactory_stria]
synonym: "tractus olfactorius lateralis" EXACT [ZFA:0000229]
xref: BM:Tel-LOT
xref: EV:0100175
xref: FMA:61971
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: NIF_GrossAnatomy:birnlex_1559
xref: TAO:0000229
xref: ZFA:0000229
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0001889
name: trunk of phrenic nerve
comment: This class was created automatically from a combination of ontologies
synonym: "phrenic nerve trunk" EXACT []
synonym: "phrenic neural trunk" EXACT []
xref: EHDAA2:0001463
xref: FMA:6198
xref: MA:0001177
is_a: UBERON:0001147 ! trunk of peripheral nerve
relationship: part_of UBERON:0001884 ! phrenic nerve
[Term]
id: UBERON:0001890
name: forebrain
def: "The most anterior region the brain including both the telencephalon and diencephalon." [Wikipedia:Forebrain, ZFIN:ZDB-PUB-961014-576]
subset: uberon_slim
subset: vertebrate_core
synonym: "prosencephalon" RELATED []
xref: AAO:0010147
xref: BTO:0000478
xref: EFO:0000909
xref: EHDAA2:0000556
xref: EHDAA:3470
xref: EMAPA:16895
xref: FMA:61992
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png
xref: MA:0000170
xref: MAT:0000105
xref: MESH:A.08.186.211.730
xref: MIAA:0000105
xref: ncithesaurus:Fore-Brain
xref: ncithesaurus:Prosencephalon
xref: NIF_GrossAnatomy:birnlex_1509
xref: SCTID:362291003
xref: TAO:0000109
xref: VHOG:0000383
xref: XAO:0000011
xref: ZFA:0000109
property_value: UBPROP:0000001 "Most anterior of the three regions of the brain consisting of the telencephalon and diencephalon.[AAO]" xsd:string
property_value: UBPROP:0000001 "The most anterior region the brain including both the telencephalon and diencephalon. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from forebrain neural tube (TAO:0007041)[TAO]" xsd:string
is_a: UBERON:0002616 ! regional part of brain
relationship: develops_from UBERON:0003080 ! anterior neural tube
relationship: develops_from UBERON:0006240 {evidence="definitional"} ! future forebrain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0001891
name: midbrain
def: "Organ component of neuraxis that has as its parts the tectum, cerebral peduncle, midbrain tegmentum and cerebral aqueduct[FMA]. The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally[ZFA]. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO]." [FMA:61993, GO:0030901, Wikipedia:Midbrain, ZFIN:curator]
comment: Editors note: developmental relationships need revised. AO notes: part of brainstem in ABA - we reject this in favor of ISBN10:0471888893 which has an implicit overlaps relationships
subset: uberon_slim
subset: vertebrate_core
synonym: "mesencephalon" RELATED []
synonym: "mesencephalon" RELATED LATIN [Wikipedia:Midbrain]
synonym: "midbrain vesicle" RELATED []
xref: AAO:0010149
xref: ABA:MB
xref: BM:MB
xref: BTO:0000138
xref: EFO:0000919
xref: EHDAA2:0001162
xref: EHDAA:3694
xref: EMAPA:16974
xref: EV:0100242
xref: FMA:61993
xref: http://upload.wikimedia.org/wikipedia/commons/f/f9/Human_brain_inferior_view_description.JPG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f9/Human_brain_inferior_view_description.JPG/200px-Human_brain_inferior_view_description.JPG
xref: MA:0000207
xref: MAT:0000106
xref: MESH:A.08.186.211.132.659
xref: MIAA:0000106
xref: ncithesaurus:Mesencephalon
xref: NIF_GrossAnatomy:birnlex_1667
xref: OpenCyc:Mx4rvsBUqpwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0001104
xref: SCTID:279099009
xref: TAO:0000128
xref: VHOG:0000069
xref: XAO:0000014
xref: ZFA:0000128
property_value: "spatially_disjoint_from" UBERON:0001894
property_value: "spatially_disjoint_from" UBERON:0002028
property_value: UBPROP:0000001 "Middle part of the brain composed of the optic tectum and penducular region.[AAO]" xsd:string
property_value: UBPROP:0000001 "The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0009616 {evidence="definitional"} ! presumptive midbrain
relationship: has_developmental_contribution_from UBERON:0003849 {evidence="definitional"} ! mesencephalic neural crest
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0001892
name: rhombomere
def: "A segment of the developing hindbrain[ZFA]. In the vertebrate embryo, a rhombomere is a transiently divided segment of the developing neural tube, within the hindbrain region (a neuromere) in the area that will eventually become the rhombencephalon. The rhombomeres appear as a series of slightly constricted swellings in the neural tube, caudal to the cephalic flexure. In human embryonic development, the rhombomeres are present by day 29[WP]." [Wikipedia:Rhombomere, ZFIN:curator]
subset: uberon_slim
subset: vertebrate_core
synonym: "future rhombencephalon" RELATED [MIAA:0000272]
synonym: "hindbrain segment" BROAD [ZFA:0001064]
synonym: "rhombomere" EXACT []
synonym: "segment of hindbrain" BROAD [ZFA:0001064]
xref: EFO:0003617
xref: EMAPA:16148
xref: EMAPA:16478
xref: MAT:0000272
xref: MIAA:0000272
xref: RETIRED_EHDAA2:0000669
xref: TAO:0001064
xref: VHOG:0000672
xref: XAO:0004079
xref: ZFA:0001064
property_value: UBPROP:0000001 "A segment of the developing hindbrain. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0004731 ! neuromere
is_a: UBERON:0004733 ! segmental subdivision of hindbrain
relationship: part_of UBERON:0002028
intersection_of: UBERON:0004731 ! neuromere
intersection_of: part_of UBERON:0002028 ! hindbrain
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0001893
name: telencephalon
def: "Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures[FMA]." [FMA:62000, Wikipedia:Telencephalon]
comment: The telencephalon is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the 'brain' It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine, NIF_GrossAnatomy:birnlex_1115).
subset: uberon_slim
subset: vertebrate_core
synonym: "cerebrum" EXACT [http://en.wikipedia.org/wiki/Talk:Cerebrum]
synonym: "endbrain" EXACT [Swanson:2004]
xref: AAO:0010479
xref: ABA:CH
xref: BM:Tel
xref: BTO:0000239
xref: EFO:0000912
xref: EHDAA2:0001982
xref: EMAPA:16652
xref: EMAPA:16910
xref: EV:0100165
xref: FMA:62000
xref: GAID:621
xref: MA:0000183
xref: MAT:0000421
xref: MESH:A.08.186.211.730.885
xref: MIAA:0000421
xref: NIF_GrossAnatomy:birnlex_1115
xref: SCTID:263353005
xref: TAO:0000079
xref: VHOG:0000283
xref: XAO:0000012
xref: ZFA:0000079
property_value: "spatially_disjoint_from" UBERON:0002037
property_value: UBPROP:0000001 "Part of the forebrain consisting of paired olfactory bulbs and cerebral hemispheres.[AAO]" xsd:string
property_value: UBPROP:0000001 "The anterior and dorsal forebrain neuromere, includes the olfactory bulb. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from presumptive telencephalon (TAO:0000571)[TAO]" xsd:string
is_a: UBERON:0002780 ! regional part of forebrain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0003850 {evidence="definitional"} ! telencephalon neural crest
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0001894
name: diencephalon
def: "Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995." [FMA:62001, Wikipedia:Diencephalon, ZFIN:curator]
comment: Note that in ABA, this is part of the brain stem
subset: uberon_slim
subset: vertebrate_core
synonym: "between brain" EXACT []
synonym: "betweenbrain" RELATED [BTO:0000342]
synonym: "diencephalon" RELATED LATIN [Wikipedia:Diencephalon]
synonym: "interbrain" EXACT [Swanson:2004]
synonym: "mature diencephalon" EXACT [FMA:62001]
xref: AAO:0010481
xref: ABA:IB
xref: BM:Die
xref: BTO:0000342
xref: EFO:0000911
xref: EHDAA2:0000385
xref: EHDAA:1969
xref: EHDAA:2645
xref: EHDAA:3472
xref: EMAPA:16641
xref: EMAPA:16896
xref: EV:0100194
xref: FMA:62001
xref: GAID:618
xref: http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png
xref: MA:0000171
xref: MAT:0000420
xref: MESH:A.08.186.211.730.385
xref: MIAA:0000420
xref: ncithesaurus:Diencephalon
xref: NIF_GrossAnatomy:birnlex_1503
xref: OpenCyc:Mx4rwC-V0JwpEbGdrcN5Y29ycA
xref: SCTID:279328001
xref: TAO:0000101
xref: VHOG:0000318
xref: XAO:0000013
xref: ZFA:0000101
property_value: "spatially_disjoint_from" UBERON:0001891
property_value: "spatially_disjoint_from" UBERON:0002028
property_value: UBPROP:0000001 "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000001 "Unpaired part of the forebrain comprised of three major parts; the epithalamus, thalamus, and hypothalamus.[AAO]" xsd:string
is_a: UBERON:0002780 ! regional part of forebrain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0006222 {evidence="definitional"} ! future diencephalon
relationship: has_developmental_contribution_from UBERON:0003851 {evidence="definitional"} ! diencephalon neural crest
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0001895
name: metencephalon
def: "Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum." [Wikipedia:Metencephalon]
comment: the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA].
subset: uberon_slim
synonym: "epencephalon" EXACT [ncithesaurus:Epencephalon]
synonym: "epencephalon-2" RELATED [FMA:62003]
xref: BTO:0000673
xref: EHDAA2:0001149
xref: EHDAA:5498
xref: EMAPA:17071
xref: FMA:62003
xref: GAID:594
xref: http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png
xref: MA:0000197
xref: MESH:A.08.186.211.132.810.428
xref: ncithesaurus:Epencephalon
xref: NIF_GrossAnatomy:birnlex_965
xref: VHOG:0000741
property_value: "dubious_for_taxon" NCBITaxon:7955
is_a: UBERON:0004733 ! segmental subdivision of hindbrain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0010092 {evidence="definitional"} ! future metencephalon
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0001896
name: medulla oblongata
def: "Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Bone_marrow_of_ovary_oblongata]
subset: uberon_slim
subset: vertebrate_core
synonym: "bulb" BROAD []
synonym: "bulbus" EXACT [FMA:62004, FMA:TA]
synonym: "medulla" BROAD [ABA:MY]
synonym: "medulla oblonzata" RELATED LATIN [Wikipedia:Medulla_oblongata]
synonym: "metepencephalon" RELATED [FMA:62004]
xref: AAO:0010486
xref: ABA:MY
xref: BTO:0000041
xref: EFO:0000924
xref: EHDAA2:0001088
xref: EHDAA:7588
xref: EMAPA:17550
xref: EV:0100275
xref: FMA:62004
xref: GAID:590
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Illu_pituitary_pineal_glands.jpg/200px-Illu_pituitary_pineal_glands.jpg
xref: MA:0000206
xref: MAT:0000111
xref: MAT:0000367
xref: MESH:A.08.186.211.132.810.406
xref: MIAA:0000111
xref: ncithesaurus:Medulla_Oblongata
xref: NIF_GrossAnatomy:birnlex_957
xref: OpenCyc:Mx4rvVjxSJwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rwCqnXJwpEbGdrcN5Y29ycA
xref: SCTID:279104005
xref: TAO:0000545
xref: VHOG:0000181
xref: XAO:0003100
xref: ZFA:0000545
property_value: "spatially_disjoint_from" UBERON:0000988
property_value: UBPROP:0000001 "Posterior portion of the hindbrain which controls respiration, heartbeat, digestion, and swallowing as well as some locomotor responses.[AAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002028 ! hindbrain
relationship: part_of UBERON:0002298 ! brainstem
relationship: part_of UBERON:0005290 ! myelencephalon
[Term]
id: UBERON:0001897
name: thalamus
def: "A midline paired symmetrical structure within the brains of vertebrates, including humans. It is situated between the cerebral cortex and midbrain, both in terms of location and neurological connections. Its function includes relaying sensation, special sense and motor signals to the cerebral cortex, along with the regulation of consciousness, sleep and alertness. The thalamus surrounds the third ventricle. It is the main product of the embryonic diencephalon." [Wikipedia:Thalamus]
comment: AO notes: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. FMA has a distinct class for thalamic complex.
subset: uberon_slim
subset: vertebrate_core
synonym: "dorsal thalamus" RELATED [FMA:62007]
synonym: "dorsal thalamus (anthoney)" EXACT [FMA:62007]
synonym: "thalamus dorsalis" RELATED LATIN [Wikipedia:Thalamus]
synonym: "thalamus dorsalis" RELATED [BTO:0001365]
xref: AAO:0010483
xref: ABA:TH
xref: BTO:0001365
xref: EFO:0000910
xref: EMAPA:17540
xref: EV:0100195
xref: FMA:62007
xref: GAID:656
xref: galen:Thalamus
xref: http://upload.wikimedia.org/wikipedia/commons/c/ce/Brain_chrischan_thalamus.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ce/Brain_chrischan_thalamus.jpg/200px-Brain_chrischan_thalamus.jpg
xref: MA:0000179
xref: MAT:0000109
xref: MESH:A.08.186.211.730.385.826
xref: MIAA:0000109
xref: ncithesaurus:Thalamus
xref: NIF_GrossAnatomy:birnlex_954
xref: OpenCyc:Mx4rwMPQ65wpEbGdrcN5Y29ycA
xref: SCTID:244433007
xref: TAO:0001215
xref: VHOG:0000657
xref: ZFA:0001215
property_value: "spatially_disjoint_from" UBERON:0001898
property_value: UBPROP:0000001 "Part of the diencephalon consisting of a mass of connecting fibers which relay sensory information to the cerebral cortex.[AAO]" xsd:string
is_a: UBERON:0002784 ! regional part of diencephalon
relationship: part_of UBERON:0010225 ! thalamic complex
[Term]
id: UBERON:0001898
name: hypothalamus
def: "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. [ZFA]. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis).[Wikipedia]." [Wikipedia:Hypothalamus, ZFIN:curator]
comment: Taxon notes: all vertebrates contain a hypothalamus[WP].
subset: uberon_slim
subset: vertebrate_core
synonym: "hypothalamus" RELATED LATIN [Wikipedia:Hypothalamus]
synonym: "preoptico-hypothalamic area" EXACT []
synonym: "preoptico-hypothalamic region" EXACT []
xref: AAO:0010484
xref: ABA:HY
xref: BM:Die-Hy
xref: BTO:0000614
xref: EFO:0000107
xref: EHDAA2:0000802
xref: EHDAA:5446
xref: EMAPA:17536
xref: EV:0100225
xref: FMA:62008
xref: GAID:460
xref: galen:Hypothalamus
xref: http://upload.wikimedia.org/wikipedia/commons/9/9f/LocationOfHypothalamus.jpg
xref: MA:0000173
xref: MAT:0000112
xref: MESH:A.08.186.211.577.482
xref: MIAA:0000112
xref: ncithesaurus:Hypothalamus
xref: NIF_GrossAnatomy:birnlex_734
xref: OpenCyc:Mx4rwEgr9JwpEbGdrcN5Y29ycA
xref: SCTID:264483005
xref: TAO:0000032
xref: VHOG:0000179
xref: XAO:0004070
xref: ZFA:0000032
property_value: "spatially_disjoint_from" UBERON:0001897
property_value: UBPROP:0000001 "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000001 "Part of the diencephalon ventral to the thalamus consisting of connecting fibers and is a center for control of the autonomous nervous system.[AAO]" xsd:string
is_a: UBERON:0002784 ! regional part of diencephalon
relationship: part_of UBERON:0000349 ! limbic system
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001899
name: epithalamus
def: "The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle[GO]. a dorsal posterior segment of the diencephalon (a segment in the middle of the brain also containing the hypothalamus and the thalamus) which includes the habenula, the stria medullaris and the pineal body. Its function is the connection between the limbic system to other parts of the brain[WP] Some functions of its components include the secretion of melatonin by the pineal gland. " [Wikipedia:Epithalamus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "epithalamus" RELATED LATIN [Wikipedia:Epithalamus]
xref: AAO:0010482
xref: ABA:EPI
xref: BM:Die-Epi
xref: BTO:0000175
xref: EFO:0000918
xref: EHDAA2:0000448
xref: EHDAA:5433
xref: EMAPA:17532
xref: EV:0100220
xref: FMA:62009
xref: GAID:455
xref: http://upload.wikimedia.org/wikipedia/commons/c/cb/Epithalamus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Epithalamus.png/200px-Epithalamus.png
xref: MA:0000172
xref: MAT:0000422
xref: MESH:A.08.186.211.577.200
xref: MIAA:0000422
xref: ncithesaurus:Epithalamus
xref: NIF_GrossAnatomy:birnlex_1710
xref: OpenCyc:Mx4rvneLQpwpEbGdrcN5Y29ycA
xref: SCTID:281487003
xref: TAO:0000509
xref: VHOG:0000178
xref: ZFA:0000509
property_value: "spatially_disjoint_from" UBERON:0001903
property_value: "spatially_disjoint_from" UBERON:0002733
property_value: "spatially_disjoint_from" UBERON:0002736
property_value: UBPROP:0000001 "Dorsal segment of the diencephalon containing the habenular ganglia, a choroid plexus, and the pineal organ.[AAO]" xsd:string
is_a: UBERON:0002784 ! regional part of diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001900
name: subthalamus
def: "Anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis[GO]." [GO:0021539, Wikipedia:Subthalamus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "prethalamus" EXACT DEVELOPMENTAL []
synonym: "subthalamic region" EXACT []
synonym: "thalamus ventralis" EXACT [NIF_GrossAnatomy:birnlex_708]
synonym: "ventral thalamus" EXACT []
xref: BM:Die-VTh
xref: EHDAA2:0004470
xref: EV:0100223
xref: FMA:62010
xref: GAID:653
xref: MA:0000181
xref: MESH:A.08.186.211.730.385.800
xref: ncithesaurus:Ventral_Thalamus
xref: NIF_GrossAnatomy:birnlex_708
xref: SCTID:279332007
xref: TAO:0000458
xref: ZFA:0000458
is_a: UBERON:0002730 ! regional part of thalamus
relationship: part_of UBERON:0001897 {source="MA"} ! thalamus
[Term]
id: UBERON:0001901
name: epithelium of trachea
alt_id: UBERON:0003227
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of trachea" EXACT [OBOL:automatic]
synonym: "epithelial tissue of windpipe" EXACT [OBOL:automatic]
synonym: "epithelium of windpipe" EXACT [OBOL:automatic]
synonym: "trachea epithelial tissue" EXACT [OBOL:automatic]
synonym: "trachea epithelium" EXACT []
synonym: "tracheal epithelium" EXACT []
synonym: "windpipe epithelial tissue" EXACT [OBOL:automatic]
synonym: "windpipe epithelium" EXACT [OBOL:automatic]
xref: BTO:0001389
xref: EHDAA2:0002069
xref: EHDAA:5007
xref: EMAPA:16855
xref: EMAPA:18409
xref: FMA:62015
xref: MA:0001862
xref: ncithesaurus:Tracheal_Epithelium
xref: VHOG:0001045
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0004815 ! lower respiratory tract epithelium
relationship: part_of UBERON:0003126
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003126 ! trachea
relationship: develops_from UBERON:0003258 ! endoderm of foregut
relationship: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0001902
name: epithelium of small intestine
def: "An epithelium that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "epithelial tissue of small bowel" EXACT [OBOL:automatic]
synonym: "epithelial tissue of small intestine" EXACT [OBOL:automatic]
synonym: "epithelium of small bowel" EXACT [OBOL:automatic]
synonym: "mid intestine epithelium" EXACT [ZFA:0005127]
synonym: "small bowel epithelial tissue" EXACT [OBOL:automatic]
synonym: "small bowel epithelium" EXACT [OBOL:automatic]
synonym: "small intestinal epithelium" EXACT []
synonym: "small intestine epithelial tissue" EXACT [OBOL:automatic]
synonym: "small intestine epithelium" EXACT []
xref: BTO:0001258
xref: FMA:62017
xref: MA:0001553
xref: SCTID:45480009
xref: TAO:0005127
xref: ZFA:0005127
property_value: UBPROP:0000001 "Intestinal epithelium which lines the lumen of the mid intestine.[TAO]" xsd:string
is_a: UBERON:0001277 ! intestinal epithelium
relationship: part_of UBERON:0002108
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001903
name: thalamic reticular nucleus
def: "The thalamic reticular nucleus is part of the ventral thalamus that forms a capsule around the thalamus laterally. It is separated from the thalamus by the external medullary lamina. Reticular cells are GABAergic, and have discoid dendritic arbors in the plane of the nucleus. Thalamic Reticular Nucleus is variously abbreviated TRN, RTN, NRT, and RT. [WP,unvetted]." [Wikipedia:Thalamic_reticular_nucleus]
comment: AO notes: only MA considers this part of a subthalamus; MA also considers a subthalamus part of a thalamus
subset: uberon_slim
synonym: "nucleus reticularis thalami" EXACT [FMA:62026, FMA:TA]
synonym: "nucleus reticularis thalami" RELATED LATIN [Wikipedia:Thalamic_reticular_nucleus]
synonym: "reticular nuclear group" EXACT []
synonym: "reticular nucleus of thalamus" EXACT []
synonym: "reticular nucleus of the thalamus" EXACT []
synonym: "reticular nucleus-2" EXACT []
synonym: "reticular thalamic nucleus" EXACT []
xref: ABA:RT
xref: BM:Die-VTh-R
xref: EV:0100214
xref: FMA:62026
xref: http://upload.wikimedia.org/wikipedia/commons/a/ab/Constudthal.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Constudthal.gif/200px-Constudthal.gif
xref: MA:0000876
xref: NIF_GrossAnatomy:birnlex_1721
xref: SCTID:279164008
property_value: "spatially_disjoint_from" UBERON:0001899
property_value: "spatially_disjoint_from" UBERON:0002733
property_value: "spatially_disjoint_from" UBERON:0002736
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001900 {source="MA"} ! subthalamus
[Term]
id: UBERON:0001904
name: habenula
def: "Habenula is a segment of the epithalamus that has as its parts the lateral and medial habenular nuclei and the habenular commissure. // The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus." [Wikipedia:Habenula, ZFIN:curator]
comment: TODO - add separate term for nucleus (e.g. BTO:0003685 habenular nucleus)
subset: uberon_slim
subset: vertebrate_core
synonym: "habenulae" RELATED []
synonym: "habenular nuclei" RELATED []
synonym: "habenular nucleus" RELATED []
xref: BTO:0003684
xref: EV:0100222
xref: FMA:62032
xref: GAID:619
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png
xref: MA:0000830
xref: MESH:A.08.186.211.577.200.360
xref: NIF_GrossAnatomy:birnlex_1611
xref: SCTID:362389008
xref: TAO:0000213
xref: ZFA:0000213
property_value: UBPROP:0000001 "The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus.[TAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001899 ! epithalamus
[Term]
id: UBERON:0001905
name: pineal body
def: "The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [Wikipedia:Pineal_gland]
comment: AO notes: part of midbrain in HOG, but this is inconsistent with ABA.
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "corpus pineale" EXACT []
synonym: "epiphysis" RELATED [ZFA:0000019]
synonym: "epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri]
synonym: "glandula pinealis" EXACT [FMA:TA]
synonym: "glandula pinealis" EXACT [FMA:62033, FMA:TA]
synonym: "pineal gland" EXACT [FMA:62033]
synonym: "pineal organ" EXACT [ZFA:0000019]
xref: AAO:0010549
xref: ABA:PIN
xref: BM:P
xref: BTO:0001067
xref: EFO:0000865
xref: EHDAA2:0001466
xref: EHDAA:7523
xref: EMAPA:18778
xref: EV:0100131
xref: EV:0100221
xref: FMA:62033
xref: GAID:453
xref: galen:PinealGland
xref: http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Illu_pituitary_pineal_glands.jpg/200px-Illu_pituitary_pineal_glands.jpg
xref: MA:0000175
xref: MAT:0000448
xref: MESH:A.06.407.635
xref: ncithesaurus:Pineal_Gland
xref: NIF_GrossAnatomy:birnlex_1184
xref: NIF_GrossAnatomy:nlx_anat_1010009
xref: OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA
xref: SCTID:181126002
xref: TAO:0000019
xref: VHOG:0000051
xref: XAO:0000160
xref: ZFA:0000019
property_value: "spatially_disjoint_from" UBERON:0001941
property_value: "spatially_disjoint_from" UBERON:0001942
property_value: UBPROP:0000001 "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string
is_a: UBERON:0002757 ! regional part of epithalamus
is_a: UBERON:0003296 ! gland of diencephalon
is_a: UBERON:0010134 {source="MA"} ! secretory circumventricular organ
relationship: part_of UBERON:0001899 {source="multiple"} ! epithalamus
[Term]
id: UBERON:0001906
name: subthalamic nucleus
def: "The subthalamic nucleus is the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function[GO]." [Wikipedia:Subthalamic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "body of forel" EXACT []
synonym: "body of luys" EXACT []
synonym: "Luys' body" RELATED [BTO:0002252]
synonym: "nucleus of corpus luysii" EXACT []
synonym: "nucleus of luys" EXACT []
synonym: "nucleus subthalamicus" RELATED LATIN [Wikipedia:Subthalamic_nucleus]
synonym: "nucleus subthalamicus" RELATED [BTO:0002252]
synonym: "subthalamic nucleus (of luys)" EXACT []
xref: ABA:STN
xref: BM:Die-Sb
xref: BTO:0002252
xref: EFO:0001392
xref: EV:0100224
xref: FMA:62035
xref: GAID:655
xref: http://upload.wikimedia.org/wikipedia/commons/3/33/Basal-ganglia-coronal-sections-large.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Basal-ganglia-coronal-sections-large.png/200px-Basal-ganglia-coronal-sections-large.png
xref: MA:0000877
xref: MESH:A.08.186.211.730.385.800.800
xref: ncithesaurus:Subthalamic_Nucleus
xref: NIF_GrossAnatomy:nlx_anat_1010002
property_value: "spatially_disjoint_from" UBERON:0001907
property_value: "spatially_disjoint_from" UBERON:0001931
property_value: "spatially_disjoint_from" UBERON:0001933
property_value: "spatially_disjoint_from" UBERON:0002430
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001900 ! subthalamus
[Term]
id: UBERON:0001907
name: zona incerta
def: "The zona incerta is a horizontally elongated region of gray matter cells in the subthalamus below the thalamus. Its connections project extensively over the brain from the cerebral cortex down into the spinal cord. Its function is unknown though several have been proposed related to “limbic–motor integration” such as controlling visceral activity and pain; gating sensory input and synchronizing cortical and subcortical brain rhythms. Its dysfunction may play a role in central pain syndrome. It is also been identified as a promising deep brain stimulation therapy target for treating Parkinsons Disease. Its existence was first described by Auguste Forel in 1877 as a “region of which nothing certain can be said”. A hundred and thirty years later in 2007, Nadia Urbain and Martin Deschênes of Université Laval noted that the “zona incerta is among the least studied regions of the brain; its name does not even appear in the index of many textbooks. ” [WP,unvetted]." [Wikipedia:Zona_incerta]
subset: uberon_slim
xref: ABA:ZI
xref: BM:Die-VTh-ZI
xref: BTO:0003146
xref: FMA:62038
xref: MA:0000878
xref: SCTID:369186007
property_value: "spatially_disjoint_from" UBERON:0001906
property_value: "spatially_disjoint_from" UBERON:0001931
property_value: "spatially_disjoint_from" UBERON:0001933
property_value: "spatially_disjoint_from" UBERON:0002430
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001900 ! subthalamus
[Term]
id: UBERON:0001908
name: optic tract
def: "Diencephalic white matter (tract) which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm[ZFA]. Predominantly white matter structure found in diencephalon consisting of fibers originating in the retina. The optic tract is considered to extend from the point of the optic chiasm and terminates largely, although not exclusively, in the lateral geniculate complex. Other fibers end in the superior colliculus and other structures in the diencephalon, midbrain and brainstem (MM)[NIF]." [NIF_GrossAnatomy, Wikipedia:Optic_tract, ZFIN:curator]
comment: editor note: relationships need checking by expert. NIF and ZFA both state part of diencepahalon; MA says part of optic nerve II. in uberon, CNS and PNS are spatially disjoint, and axon tracts are part of the CNS so we make the relationship to CNII 'continuous_with'
subset: uberon_slim
subset: vertebrate_core
synonym: "optic lemniscus" EXACT []
synonym: "tractus opticus" RELATED LATIN [Wikipedia:Optic_tract]
synonym: "visual pathway" RELATED [GAID:735]
xref: BM:Tel-OT
xref: FMA:62046
xref: GAID:735
xref: http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray773.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Gray773.png/200px-Gray773.png
xref: MA:0001099
xref: MESH:A.08.612.220.860
xref: ncithesaurus:Optic_Tract
xref: NIF_GrossAnatomy:birnlex_1684
xref: SCTID:280952003
xref: TAO:0000252
xref: VHOG:0001164
xref: XAO:0004101
xref: ZFA:0000252
is_a: UBERON:0011591 ! tract of diencephalon
relationship: continuous_with UBERON:0000941 ! cranial nerve II
relationship: continuous_with UBERON:0000959 ! optic chiasma
relationship: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0002104 ! visual system
[Term]
id: UBERON:0001909
name: habenular commissure
def: "The habenular commissure, is a brain commissure (a band of nerve fibers) situated in front of the pineal gland that connects the habenular nucleus on one side of the diencephalon with that on the other side. The habernular commissure is part of the trigonum habenulæ (a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the tænia thalami). The trigonum habenulæ also contains groups of nerve cells termed the ganglion habenulæ. Fibers enter the trigonum habenulæ from the stalk of the pineal gland, and the habenular commissure. Most of the trigonum habenulæ's fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion. Nerve cell fibers enter the trigonum habenulæ from the stalk of the pineal body, and the habernular commissure. [WP,unvetted]." [Wikipedia:Habenular_commissure]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "commissura habenularum" EXACT [ZFA:0000359]
synonym: "commissura habenularum" RELATED LATIN [Wikipedia:Habenular_commissure]
synonym: "commissure habenularum" EXACT [MP:0008231]
xref: BM:Die-Epi-HC
xref: FMA:62048
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png
xref: NIF_GrossAnatomy:birnlex_1609
xref: SCTID:279335009
xref: TAO:0000359
xref: ZFA:0000359
is_a: UBERON:0005341 ! ventral commissure
is_a: UBERON:0011590 ! commissure of diencephalon
relationship: part_of UBERON:0001904 ! habenula
[Term]
id: UBERON:0001910
name: medial forebrain bundle
def: "The Medial forebrain bundle (MFB), is a complex bundle of axons coming from the basal olfactory regions, the periamygdaloid region, and the septal nuclei, and passing to the lateral hypothalamus, with some carrying on into the tegmentum. It contains both ascending and descending fibers. It also represents a part of the mesolimbic pathway, carrying information between the ventral tegmentum and the nucleus accumbens. It is commonly accepted that the MFB is a part of the reward system, involved in the integration of reward and pleasure. Electrical stimulation of the medial forebrain bundle is believed to cause sensations of pleasure. This hypothesis is based upon intracranial self-stimulation (ICSS) studies. Animals will work for MFB ICSS, and humans report that MFB ICSS is intensely pleasurable. This is most likely because the medial forebrain bundle carries information from the ventral tegmental area (VTA) to the nucleus accumbens (nAcc or Acb). The nAcc is a recognized reward center, and activation of the pathway from the VTA to the nAcc is believed to be rewarding, which is why it is sometimes referred to as the hedonic highway. [WP,unvetted]." [Wikipedia:Medial_forebrain_bundle]
comment: AO notes: a pathway in NCIT
subset: uberon_slim
subset: vertebrate_core
synonym: "fasciculus medialis telencephali" RELATED LATIN [Wikipedia:Medial_forebrain_bundle]
synonym: "medial forebrain fasciculus" EXACT []
synonym: "telencephalic medial fasciculus" EXACT []
xref: FMA:62064
xref: GAID:736
xref: MESH:A.08.612.492
xref: ncithesaurus:Medial_Forebrain_Bundle
xref: NIF_GrossAnatomy:birnlex_908
xref: TAO:0005111
xref: ZFA:0005111
is_a: UBERON:0005838 ! fasciculus of brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0001911
name: mammary gland
def: "The specialized accessory gland of the skin of female mammals that secretes milk. In the human female, it is a compound tubuloalveolar gland composed of 15 to 25 lobes arranged radially about the nipple and separated by connective and adipose tissue, each lobe having its own excretory (lactiferous) duct opening on the nipple. The lobes are subdivided into lobules, with the alveolar ducts and alveoli being the secretory portion of the gland[BTO]. The mouse forms five to six pairs of mammary glands that extend from the neck to the groin." [BTO:0000817, Wikipedia:Mammary_gland]
comment: Note that this class corresponds to the generic mammary gland. The human mammary gland is in the thoracic/breast region and is therefore covered by the subclass "thoracic mammary gland" // Males typically only have rudimentary mammary glands, The male Dayak fruit bat has lactating mammary glands. Male lactation occurs infrequently in some species. We make a part_of association to female organism for now as this is the canonical case
subset: organ_slim
subset: uberon_slim
synonym: "Brustdruese" RELATED [BTO:0000817]
synonym: "dug" RELATED [Wikipedia:Mammary_gland]
synonym: "glandula mammaria" EXACT PLURAL [FMA:57983, FMA:TA]
synonym: "glandula mammaria" RELATED LATIN [Wikipedia:Mammary_gland]
synonym: "lactiferous gland" EXACT [FMA:62088]
synonym: "lobe of breast" EXACT []
synonym: "lobe of mammary gland" EXACT []
synonym: "mamma" RELATED [BTO:0000817]
xref: BTO:0000817
xref: EFO:0000854
xref: EMAPA:17759
xref: EV:0100125
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_breast_anatomy.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Illu_breast_anatomy.jpg/200px-Illu_breast_anatomy.jpg
xref: MA:0000145
xref: MAT:0000073
xref: MESH:A.10.336.482
xref: MIAA:0000073
xref: ncithesaurus:Mammary_Gland
xref: OpenCyc:Mx4rvVjVq5wpEbGdrcN5Y29ycA
xref: SCTID:361720005
xref: VHOG:0000398
is_a: UBERON:0002365 {source="MA"} ! exocrine gland
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: secretes UBERON:0001913
intersection_of: UBERON:0002530 ! gland
intersection_of: secretes UBERON:0001913 ! milk
relationship: develops_from UBERON:0005333 ! mammary bud
relationship: part_of UBERON:0003100 {notes="see notes"} ! female organism
relationship: secretes UBERON:0001913 ! milk
[Term]
id: UBERON:0001912
name: lobule of lactiferous gland
def: "Organ component of the mammary gland which consists of an aggregate of mammary alveoli that communicate with a lobular lactiferous duct.[FMA]" [FMA:62090]
comment: TODO - ensure correct terminology for lobes/lobules. FMA uses lobule for core term, but also has 'set of mammary gland lobes'.
subset: uberon_slim
synonym: "acinus of mammary gland" EXACT []
synonym: "breast lobe" RELATED [BTO:0004718]
synonym: "lactiferous acinus" EXACT []
synonym: "lactiferous gland lobule" EXACT []
synonym: "lactiferous lobule" EXACT []
synonym: "lobe of breast" RELATED [BTO:0004718]
synonym: "lobe of mammary gland" RELATED [BTO:0004718]
synonym: "lobi glandulae mammariae" RELATED [BTO:0004718]
synonym: "lobule of mammary gland" EXACT []
synonym: "lobus glandulae mammariae" RELATED [BTO:0004718]
synonym: "mammary acinus" EXACT []
synonym: "mammary gland lobule" EXACT []
xref: BTO:0004718
xref: FMA:62090
xref: MA:0000793
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0001913
name: milk
def: "Secretion produced by the mammary gland.[FMA]" [FMA:FMA, Wikipedia:Breast_milk]
comment: AO notes: ncit:Milk refers specifically to cow milk
subset: uberon_slim
synonym: "mammary gland milk" EXACT []
xref: BTO:0000868
xref: ENVO:02000031
xref: EV:0100126
xref: FMA:62100
xref: GAID:1230
xref: galen:Milk
xref: MA:0002552
xref: MAT:0000056
xref: MESH:A.13.622
xref: MIAA:0000056
xref: ncithesaurus:Breast_Fluid_or_Secretion
xref: OpenCyc:Mx4rvVjGZJwpEbGdrcN5Y29ycA
xref: VHOG:0001263
is_a: UBERON:0006539 ! mammary gland fluid/secretion
relationship: secreted_by UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0001914
name: colostrum
def: "The thin, yellow, serous fluid secreted by the mammary glands during pregnancy and immediately postpartum before lactation begins. It consists of immunologically active substances, white blood cells, water, protein, fat, and carbohydrates." [MESH:A.12.200.194, Wikipedia:Colostrum]
comment: AO notes: we follow in MA in making this is a sib of mammary gland milk, rather than a subclass.
subset: uberon_slim
xref: BTO:0000276
xref: FMA:62101
xref: GAID:1159
xref: MA:0002551
xref: MESH:A.12.200.194
xref: ncithesaurus:Colostrum
is_a: UBERON:0006539 ! mammary gland fluid/secretion
relationship: secreted_by UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0001915
name: endothelium of capillary
def: "An endothelium that is part of a capillary [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "blood capillary endothelium" EXACT [OBOL:automatic]
synonym: "capillary endothelium" EXACT []
synonym: "capillary vessel endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of blood capillary" EXACT [OBOL:automatic]
synonym: "endothelium of capillary vessel" EXACT [OBOL:automatic]
xref: BTO:0004954
xref: FMA:62114
xref: MA:0000711
xref: ncithesaurus:Capillary_Endothelium
is_a: UBERON:0004638 ! blood vessel endothelium
relationship: part_of UBERON:0001982
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001982 ! capillary
relationship: part_of UBERON:0001982 ! capillary
[Term]
id: UBERON:0001916
name: endothelium of arteriole
def: "An endothelium that is part of an arteriole [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "arteriole endothelium" EXACT []
xref: FMA:62115
xref: MA:0000705
xref: ncithesaurus:Arteriole_Endothelium
is_a: UBERON:0001917 ! endothelium of artery
relationship: part_of UBERON:0001980
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001980 ! arteriole
relationship: part_of UBERON:0001980 ! arteriole
[Term]
id: UBERON:0001917
name: endothelium of artery
def: "An endothelium that is part of an artery [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "arterial endothelium" EXACT []
synonym: "artery endothelium" EXACT []
xref: AAO:0011013
xref: BTO:0004757
xref: FMA:62116
xref: MA:0000707
xref: ncithesaurus:Artery_Endothelium
xref: VHOG:0001215
xref: XAO:0000357
property_value: UBPROP:0000001 "The endothelium is the thin layer of cells that lines the interior surface of blood vessels, forming an interface between circulating blood in the lumen and the rest of the vessel wall.[AAO]" xsd:string
is_a: UBERON:0003915 ! endothelial tube
is_a: UBERON:0004638 ! blood vessel endothelium
is_a: UBERON:0004700 ! arterial system endothelium
relationship: part_of UBERON:0001637
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001637 ! artery
relationship: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0001918
name: endothelium of venule
def: "An endothelium that is part of a venule [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "venule endothelium" EXACT []
xref: FMA:62117
xref: MA:0000716
xref: ncithesaurus:Venule_Endothelium
is_a: UBERON:0004638 ! blood vessel endothelium
is_a: UBERON:0004701 ! venous system endothelium
relationship: part_of UBERON:0001979
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001979 ! venule
relationship: part_of UBERON:0001979 ! venule
[Term]
id: UBERON:0001919
name: endothelium of vein
def: "An endothelium that is part of a vein [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "vein endothelium" EXACT []
synonym: "venous endothelium" EXACT []
xref: AAO:0011110
xref: BTO:0004756
xref: FMA:62118
xref: MA:0000712
xref: ncithesaurus:Vein_Endothelium
xref: VHOG:0001216
xref: XAO:0000358
is_a: UBERON:0004638 ! blood vessel endothelium
is_a: UBERON:0004701 ! venous system endothelium
relationship: part_of UBERON:0001638
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001638 ! vein
relationship: part_of UBERON:0001638 ! vein
[Term]
id: UBERON:0001920
name: paraventricular nucleus of thalamus
def: "The nucleus paraventricularis anterior thalami and nuclues paraventricularis posterior thalami, two of the nuclei mediani thalami; they are situated on the dorsomedial wall of the thalamus, juxtaposed to the third ventricle." [Dorlands_Medical_Dictionary:MerckSource]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nuclei paraventriculares thalami" EXACT [FMA:62152, FMA:TA]
synonym: "paraventricular gray" EXACT []
synonym: "paraventricular nuclei" RELATED PLURAL []
synonym: "paraventricular nuclei of thalamus" EXACT PLURAL []
synonym: "paraventricular thalamic nucleus" EXACT []
xref: ABA:PVT
xref: BM:Die-Th-Pa
xref: BTO:0002460
xref: FMA:62152
xref: http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg
xref: MA:0000866
xref: NIF_GrossAnatomy:birnlex_764
xref: SCTID:369163000
property_value: "spatially_disjoint_from" UBERON:0002992
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0002705 {source="FMA"} ! midline nuclear group
[Term]
id: UBERON:0001921
name: reuniens nucleus
comment: This class was created automatically from a combination of ontologies
synonym: "medioventral nucleus" EXACT []
synonym: "nucleus reuniens" EXACT []
synonym: "reuniens thalamic nucleus" EXACT []
xref: BTO:0002459
xref: FMA:62153
xref: MA:0000865
xref: NIF_GrossAnatomy:birnlex_770
xref: SCTID:369164006
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001922
name: parafascicular nucleus
comment: This class was created automatically from a combination of ontologies
synonym: "nuclei parafasciculares thalami" EXACT [NIF_GrossAnatomy:birnlex_952]
synonym: "nucleus parafascicularis" EXACT [NIF_GrossAnatomy:birnlex_952]
synonym: "nucleus parafascicularis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_952]
synonym: "nucleus parafascicularis thalami" EXACT [NIF_GrossAnatomy:birnlex_952]
synonym: "parafascicular nucleus (vogt)" EXACT [NIF_GrossAnatomy:birnlex_952]
synonym: "parafascicular nucleus of thalamus" EXACT []
synonym: "parafascicular nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_952]
synonym: "parafascicular thalamic nucleus" EXACT []
xref: ABA:PF
xref: BM:Die-Th-Pf
xref: EV:0100202
xref: FMA:62166
xref: MA:0000874
xref: ncithesaurus:Parafascicular_Nucleus_of_the_Thalamus
xref: NIF_GrossAnatomy:birnlex_952
xref: SCTID:279150008
property_value: "spatially_disjoint_from" UBERON:0001923
property_value: "spatially_disjoint_from" UBERON:0001924
property_value: "spatially_disjoint_from" UBERON:0002955
property_value: "spatially_disjoint_from" UBERON:0003036
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group
[Term]
id: UBERON:0001923
name: central medial nucleus
def: "a small cell group in the interthalamic adhesion of the thalamus that occupy the midline region of the internal medullary lamina, between the left and right paracentral nuclei." [MP:0008929]
comment: This class was created automatically from a combination of ontologies
synonym: "central medial nucleus of thalamus" EXACT []
synonym: "central medial nucleus thalamus (rioch 1928)" EXACT [NIF_GrossAnatomy:birnlex_971]
synonym: "central medial thalamic nucleus" EXACT []
synonym: "nucleus centralis medialis" EXACT [NIF_GrossAnatomy:birnlex_971]
synonym: "nucleus centralis medialis thalami" EXACT [NIF_GrossAnatomy:birnlex_971]
xref: ABA:CM
xref: BM:Die-CeM
xref: BTO:0003753
xref: FMA:62171
xref: MA:0000872
xref: NIF_GrossAnatomy:birnlex_971
xref: SCTID:279161000
property_value: "spatially_disjoint_from" UBERON:0001922
property_value: "spatially_disjoint_from" UBERON:0001924
property_value: "spatially_disjoint_from" UBERON:0002955
property_value: "spatially_disjoint_from" UBERON:0003036
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001924
name: paracentral nucleus
def: "one of the intralaminar nuclei of the thalamus, located medial to the central lateral nucleus." [MP:0008928]
comment: todo - relationships
synonym: "nucleus centralis lateralis superior (kusama)" EXACT [NIF_GrossAnatomy:birnlex_981]
synonym: "nucleus paracentral" EXACT [NIF_GrossAnatomy:birnlex_981]
synonym: "nucleus paracentral thalami" EXACT [NIF_GrossAnatomy:birnlex_981]
synonym: "nucleus paracentralis thalami" EXACT [FMA:62172, FMA:TA]
synonym: "paracentral nucleus of thalamus" EXACT []
synonym: "paracentral nucleus thalamus (gurdjian 1927)" EXACT [NIF_GrossAnatomy:birnlex_981]
synonym: "paracentral thalamic nucleus" EXACT []
xref: ABA:PCN
xref: BM:Die-Th-Pc
xref: EV:0100204
xref: FMA:62172
xref: MA:0000873
xref: NIF_GrossAnatomy:birnlex_981
xref: SCTID:279152000
property_value: "spatially_disjoint_from" UBERON:0001922
property_value: "spatially_disjoint_from" UBERON:0001923
property_value: "spatially_disjoint_from" UBERON:0002955
property_value: "spatially_disjoint_from" UBERON:0003036
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group
[Term]
id: UBERON:0001925
name: ventral lateral nucleus
def: "The ventral lateral nucleus (VL) is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_lateral_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "lateral ventral nucleus of thalamus" EXACT []
synonym: "nuclei ventrales laterales thalami" RELATED [BTO:0002463]
synonym: "nucleus ventralis intermedius" EXACT [NIF_GrossAnatomy:birnlex_1237]
synonym: "nucleus ventralis lateralis" EXACT [NIF_GrossAnatomy:birnlex_1237]
synonym: "nucleus ventralis lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1237]
synonym: "nucleus ventralis thalami lateralis" EXACT [NIF_GrossAnatomy:birnlex_1237]
synonym: "nucleus ventrolateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1237]
synonym: "ventral lateral complex of thalamus" EXACT []
synonym: "ventral lateral nuclei of thalamus" RELATED [BTO:0002463]
synonym: "ventral lateral nucleus of thalamus" EXACT []
synonym: "ventral lateral thalamic nuclei" EXACT []
synonym: "ventral lateral thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1237]
synonym: "ventrolateral nucleus of the thalamus" EXACT []
synonym: "ventrolateral thalamic nucleus" EXACT []
xref: BM:Die-Th-VL
xref: BTO:0002463
xref: FMA:62186
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: ncithesaurus:Ventrolateral_Nucleus_of_the_Thalamus
xref: NIF_GrossAnatomy:birnlex_1237
xref: SCTID:279146001
xref: TAO:0000306
xref: ZFA:0000306
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001900 ! subthalamus
[Term]
id: UBERON:0001926
name: lateral geniculate body
def: "The lateral geniculate nucleus is the primary processor of visual information received from the retina[GO]." [Wikipedia:Lateral_geniculate_body]
comment: Note that BTO has distinct classes for body and nucleus, but other sources treat as identical
subset: uberon_slim
synonym: "corpus geniculatum externum" RELATED [BTO:0004367]
synonym: "corpus geniculatum laterales" EXACT [NIF_GrossAnatomy:birnlex_1662]
synonym: "external geniculate body" RELATED [Wikipedia:Lateral_geniculate_nucleus]
synonym: "lateral geniculate complex" EXACT []
synonym: "lateral geniculate nucleus" EXACT []
synonym: "nucleus geniculatus lateralis" EXACT [NIF_GrossAnatomy:birnlex_1662]
xref: BTO:0004366
xref: BTO:0004367
xref: EFO:0001988
xref: EV:0100219
xref: FMA:62209
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png
xref: MA:0000869
xref: ncithesaurus:External_Geniculate_Body
xref: NIF_GrossAnatomy:birnlex_1662
xref: SCTID:362377006
is_a: UBERON:0007692 {source="FMA"} ! nucleus of thalamus
relationship: part_of UBERON:0002704 {source="FMA"} ! metathalamus
[Term]
id: UBERON:0001927
name: medial geniculate body
def: "The Medial Geniculate Nucleus (MGN) or Medial Geniculate Body (MGB) is part of the auditory thalamus and represents the thalamic relay between the inferior colliculus (IC) and the auditory cortex (AC). It is made up of a number of sub-nuclei that are distinguished by their neuronal morphology and density, by their afferent and efferent connections, and by the coding properties of their neurons. It is thought that the MGB influences the direction and maintenance of attention. [WP,unvetted]." [Wikipedia:Medial_geniculate_body]
subset: uberon_slim
synonym: "corpus geniculatum mediale" EXACT [NIF_GrossAnatomy:birnlex_1670]
synonym: "internal geniculate body" RELATED [ncithesaurus:Internal_Geniculate_Body]
synonym: "medial geniculate complex" EXACT []
synonym: "medial geniculate nuclei" EXACT []
synonym: "medial geniculate nucleus" EXACT []
synonym: "MGB" RELATED [BTO:0002674]
synonym: "nuclei corporis geniculati medialis" EXACT [FMA:62211, FMA:TA]
xref: ABA:MG
xref: BM:Die-Th-MG
xref: BTO:0002674
xref: EFO:0001968
xref: EV:0100218
xref: FMA:62211
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: MA:0000870
xref: ncithesaurus:Internal_Geniculate_Body
xref: NIF_GrossAnatomy:birnlex_1670
xref: SCTID:362378001
property_value: "spatially_disjoint_from" UBERON:0002479
is_a: UBERON:0007692 {source="FMA"} ! nucleus of thalamus
relationship: part_of UBERON:0002704 {source="FMA"} ! metathalamus
[Term]
id: UBERON:0001928
name: preoptic area
def: "Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus[ZFA]." [Wikipedia:Preoptic_area, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "area hypothalamica rostralis" RELATED [BTO:0001796]
synonym: "area praeoptica" RELATED []
synonym: "area preoptica" RELATED LATIN [Wikipedia:Preoptic_area]
synonym: "area preoptica" RELATED []
synonym: "preoptic hypothalamic area" RELATED [BTO:0001796]
synonym: "preoptic hypothalamic region" RELATED [BTO:0001796]
synonym: "preoptic nuclei" EXACT []
synonym: "preoptic region" RELATED []
synonym: "preoptic region of hypothalamus" EXACT []
synonym: "regio hypothalamica anterior" RELATED [BTO:0001796]
xref: BM:Die-Hy-POA
xref: BTO:0001796
xref: EFO:0002523
xref: FMA:62313
xref: GAID:644
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MESH:A.08.186.211.730.385.357.342.450
xref: NIF_GrossAnatomy:birnlex_1706
xref: SCTID:362382004
xref: TAO:0000470
xref: ZFA:0000470
property_value: UBPROP:0000001 "Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, Atlas of Early Zebrafish Brain Development.[TAO]" xsd:string
is_a: UBERON:0002784 ! regional part of diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001929
name: supraoptic nucleus
def: "The supraoptic nucleus (SON) is a nucleus of magnocellular neurosecretory cells in the hypothalamus of the mammalian brain. The nucleus is situated at the base of the brain, adjacent to the optic chiasm. In humans, it contains about 3,000 neurons. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376, Wikipedia:Supraoptic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nucleus supraopticus" EXACT [BTO:0002697]
synonym: "nucleus supraopticus" RELATED LATIN [Wikipedia:Supraoptic_nucleus]
synonym: "supra-optic nucleus" EXACT []
synonym: "supraoptic nucleus of hypothalamus" EXACT []
xref: ABA:SO
xref: BM:Die-Hy-SON
xref: BTO:0002697
xref: EFO:0002476
xref: EV:0100227
xref: FMA:62317
xref: GAID:646
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/SONss.jpg
xref: http://upload.wikimedia.org/wikipedia/en/thumb/d/d7/SONss.jpg/200px-SONss.jpg
xref: MA:0000849
xref: MESH:A.08.186.211.730.385.357.342.650
xref: NIF_GrossAnatomy:birnlex_1411
xref: SCTID:369130007
property_value: "spatially_disjoint_from" UBERON:0001930
property_value: "spatially_disjoint_from" UBERON:0001932
is_a: UBERON:0006568 ! hypothalamic nucleus
relationship: part_of UBERON:0002271 {source="MA", source="ABA"} ! periventricular zone of hypothalamus
relationship: part_of UBERON:0002550 {source="FMA"} ! anterior hypothalamic region
[Term]
id: UBERON:0001930
name: paraventricular nucleus of hypothalamus
def: "The paraventricular nucleus (PVN) is a neuronal nucleus in the hypothalamus. It contains multiple subpopulations of neurons that are activated by a variety of stressful and/or physiological changes. Many PVH neurons project directly to the posterior pituitary where they release oxytocin or vasopressin into the general circulation. Other PVN neurons control various anterior pituitary functions, while still others directly regulate appetite and autonomic functions in the brainstem and spinal cord. [WP,unvetted]." [Wikipedia:Paraventricular_nucleus_of_hypothalamus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "filiform nucleus" EXACT []
synonym: "nuclei paraventricularis hypothalami" RELATED LATIN [Wikipedia:Paraventricular_nucleus_of_hypothalamus]
synonym: "nucleus paraventricularis hypothalami" RELATED [BTO:0002476]
synonym: "paraventricular hypothalamic nucleus" EXACT []
synonym: "paraventricular nucleus" EXACT []
xref: ABA:PVH
xref: BM:Die-Hy-PAH
xref: BTO:0002476
xref: EFO:0002469
xref: EV:0100229
xref: FMA:62320
xref: GAID:643
xref: http://upload.wikimedia.org/wikipedia/commons/e/ef/PVNss.jpg
xref: http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg
xref: MA:0000848
xref: MESH:A.08.186.211.730.385.357.342.400
xref: NIF_GrossAnatomy:birnlex_1407
xref: SCTID:369131006
property_value: "spatially_disjoint_from" UBERON:0001929
property_value: "spatially_disjoint_from" UBERON:0001932
is_a: UBERON:0006568 ! hypothalamic nucleus
relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus
[Term]
id: UBERON:0001931
name: lateral preoptic nucleus
def: "The lateral preoptic nucleus is lateral to the medial preoptic nucleus. It also mediates non-REM sleep onset.[WP,unvetted]." [Wikipedia:Preoptic_area#Lateral_preoptic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateral preoptic area" EXACT []
synonym: "lateral preoptic hypothalamic nucleus" EXACT []
xref: ABA:LPO
xref: BM:Die-Hy-LPO
xref: FMA:62326
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000835
xref: NIF_GrossAnatomy:birnlex_1722
xref: SCTID:369129002
property_value: "spatially_disjoint_from" UBERON:0001906
property_value: "spatially_disjoint_from" UBERON:0001907
property_value: "spatially_disjoint_from" UBERON:0001933
property_value: "spatially_disjoint_from" UBERON:0002430
is_a: UBERON:0006568 ! hypothalamic nucleus
relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus
[Term]
id: UBERON:0001932
name: arcuate nucleus of hypothalamus
def: "The arcuate nucleus (or infundibular nucleus) is an aggregation of neurons in the mediobasal hypothalamus, adjacent to the third ventricle and the median eminence. The arcuate nucleus includes several important populations of neurons, including: Neuroendocrine neurons, Centrally-projecting neurons and Others. [WP,unvetted]." [Wikipedia:Arcuate_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arcuate hypothalamic nucleus" EXACT []
synonym: "arcuate nucleus" EXACT []
synonym: "arcuate nucleus-2" EXACT []
synonym: "arcuate periventricular nucleus" EXACT []
synonym: "infundibular hypothalamic nucleus" EXACT []
synonym: "infundibular nucleus" EXACT []
synonym: "infundibular periventricular nucleus" EXACT []
synonym: "nucleus arcuatus" EXACT [FMA:62329, FMA:TA]
synonym: "nucleus arcuatus hypothalami" RELATED LATIN [Wikipedia:Arcuate_nucleus]
synonym: "nucleus arcuatus hypothalami" RELATED [BTO:0002473]
synonym: "nucleus infundibularis" RELATED [BTO:0002473]
synonym: "nucleus semilunaris" RELATED [BTO:0002473]
xref: ABA:ARH
xref: BM:HAr
xref: BTO:0002473
xref: EV:0100230
xref: FMA:62329
xref: GAID:647
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000847
xref: MESH:A.08.186.211.730.385.357.352.081
xref: ncithesaurus:Arcuate_Nucleus
xref: NIF_GrossAnatomy:birnlex_1638
property_value: "spatially_disjoint_from" UBERON:0001929
property_value: "spatially_disjoint_from" UBERON:0001930
is_a: UBERON:0006568 ! hypothalamic nucleus
relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus
[Term]
id: UBERON:0001933
name: retrochiasmatic area
comment: This class was created automatically from a combination of ontologies
synonym: "retrochiasmatic region" EXACT []
xref: ABA:RCH
xref: FMA:62330
xref: MA:0000841
xref: NIF_GrossAnatomy:birnlex_1569
property_value: "spatially_disjoint_from" UBERON:0001906
property_value: "spatially_disjoint_from" UBERON:0001907
property_value: "spatially_disjoint_from" UBERON:0001931
property_value: "spatially_disjoint_from" UBERON:0002430
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002272 ! medial zone of hypothalamus
[Term]
id: UBERON:0001934
name: dorsomedial nucleus of hypothalamus
def: "The Dorsomedial hypothalamic nucleus is a nucleus of the hypothalamus. It is involved in feeding, drinking, and body weight regulation. [WP,unvetted]." [Wikipedia:Dorsomedial_hypothalamic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dorsomedial hypothalamic nucleus" EXACT []
synonym: "dorsomedial nucleus of dorsal hypothalamus" EXACT []
synonym: "dorsomedial nucleus of intermediate hypothalamus" EXACT []
synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED [BTO:0002474]
synonym: "nucleus dorsomedialis hypothalamicae intermediae" RELATED LATIN [Wikipedia:Dorsomedial_hypothalamic_nucleus]
xref: ABA:DMH
xref: BM:Die-Hy-DMH
xref: BTO:0002474
xref: EV:0100232
xref: FMA:62331
xref: GAID:648
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000838
xref: MESH:A.08.186.211.730.385.357.352.270
xref: NIF_GrossAnatomy:birnlex_1558
xref: SCTID:369134003
property_value: "spatially_disjoint_from" UBERON:0002034
property_value: "spatially_disjoint_from" UBERON:0002219
property_value: "spatially_disjoint_from" UBERON:0002625
property_value: "spatially_disjoint_from" UBERON:0002689
property_value: "spatially_disjoint_from" UBERON:0002690
property_value: "spatially_disjoint_from" UBERON:0007626
is_a: UBERON:0002951 ! regional part of intermediate hypothalamic region
is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus
relationship: part_of UBERON:0002272 {source="MA"} ! medial zone of hypothalamus
relationship: part_of UBERON:0002555 {source="FMA"} ! intermediate hypothalamic region
[Term]
id: UBERON:0001935
name: ventromedial nucleus of hypothalamus
def: "The ventromedial nucleus (sometimes referred to as the ventromedial hypothalamus) is a nucleus of the hypothalamus. [WP,unvetted]." [Wikipedia:Ventromedial_hypothalamic_nucleus]
comment: part of tuberal area in MA
subset: uberon_slim
synonym: "nucleus ventromedialis hypothalami" RELATED [BTO:0002472]
synonym: "ventrolateral hypothalamic nucleus" RELATED [BTO:0002472]
synonym: "ventrolateral nucleus of hypothalamus" RELATED [BTO:0002472]
synonym: "ventromedial hypothalamic nucleus" EXACT []
synonym: "ventromedial nucleus of hypothalamus." RELATED [BTO:0002472]
xref: ABA:VMH
xref: BM:VMH
xref: BTO:0002472
xref: EV:0100233
xref: FMA:62332
xref: GAID:650
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000845
xref: MESH:A.08.186.211.730.385.357.352.953
xref: NIF_GrossAnatomy:birnlex_1572
xref: SCTID:369124007
property_value: "spatially_disjoint_from" UBERON:0002035
property_value: "spatially_disjoint_from" UBERON:0002206
property_value: "spatially_disjoint_from" UBERON:0002634
property_value: "spatially_disjoint_from" UBERON:0002706
is_a: UBERON:0002951 ! regional part of intermediate hypothalamic region
is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus
relationship: part_of UBERON:0002555 {source="FMA"} ! intermediate hypothalamic region
[Term]
id: UBERON:0001936
name: tuberomammillary nucleus
def: "The tuberomammillary nucleus is a subnucleus of the posterior third of the hypothalamus. It consists of, largely, histaminergic and is involved with the control of arousal, sleep and circadian rhythm. Axons of the tuberomammillary nucleus project primarily to the cerebral cortex, thalamus, basal ganglia, basal forebrain, and hypothalamus. The projections to the cerebral cortex directly increase cortical activation and arousal, and projections to acetylcholinergic neurons of the basal forebrain and dorsal pons do so indirectly, by increasing the release of acetylcholine in the cerebral cortex. [WP,unvetted]." [Wikipedia:Tuberomammillary_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "caudal magnocellular nucleus" EXACT [NIF_GrossAnatomy:birnlex_1271]
synonym: "mammiloinfundibular nucleus" EXACT [NIF_GrossAnatomy:birnlex_1271]
synonym: "TM" EXACT [NIF_GrossAnatomy:birnlex_1271]
synonym: "tuberomamillary nucleus" RELATED DUBIOUS [EV:0100237]
synonym: "tuberomammillary hypothalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1271]
synonym: "tuberomammillary nucleus" EXACT [NIF_GrossAnatomy:birnlex_1271]
xref: ABA:TM
xref: EV:0100237
xref: FMA:62335
xref: MA:0000853
xref: NIF_GrossAnatomy:birnlex_1271
xref: SCTID:369122006
property_value: "spatially_disjoint_from" UBERON:0001938
property_value: "spatially_disjoint_from" UBERON:0001939
property_value: "spatially_disjoint_from" UBERON:0001940
is_a: UBERON:0002785 ! regional part of lateral hypothalamic region
is_a: UBERON:0002789 ! regional part of posterior hypothalamic region
is_a: UBERON:0006568 ! hypothalamic nucleus
relationship: part_of UBERON:0002206 {source="MA"} ! mammillary body
relationship: part_of UBERON:0002430 {source="FMA"} ! lateral hypothalamic area
[Term]
id: UBERON:0001937
name: lateral hypothalamic nucleus
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
xref: EV:0100234
xref: FMA:62337
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: NIF_GrossAnatomy:birnlex_1199
xref: SCTID:360452004
xref: TAO:0000227
xref: ZFA:0000227
is_a: UBERON:0002785 ! regional part of lateral hypothalamic region
is_a: UBERON:0006568 ! hypothalamic nucleus
relationship: part_of UBERON:0002430 ! lateral hypothalamic area
[Term]
id: UBERON:0001938
name: lateral mammillary nucleus
comment: This class was created automatically from a combination of ontologies
synonym: "lateral mammillary hypothalamic nucleus" EXACT []
synonym: "lateral nucleus of mammillary body" EXACT []
synonym: "nucleus mammillaris lateralis" EXACT [FMA:62341, FMA:TA]
xref: ABA:LM
xref: EV:0100239
xref: FMA:62341
xref: MA:0000850
xref: NIF_GrossAnatomy:birnlex_1460
xref: SCTID:369143007
property_value: "spatially_disjoint_from" UBERON:0001936
property_value: "spatially_disjoint_from" UBERON:0001939
property_value: "spatially_disjoint_from" UBERON:0001940
is_a: UBERON:0002789 ! regional part of posterior hypothalamic region
is_a: UBERON:0006568 ! hypothalamic nucleus
relationship: part_of UBERON:0002206 ! mammillary body
[Term]
id: UBERON:0001939
name: medial mammillary nucleus
comment: This class was created automatically from a combination of ontologies
synonym: "internal mammillary nucleus" EXACT []
synonym: "medial nucleus of mammillary body" EXACT []
synonym: "nucleus mammillaris medialis" EXACT [FMA:62342, FMA:TA]
xref: ABA:MM
xref: EV:0100238
xref: FMA:62342
xref: MA:0000851
xref: NIF_GrossAnatomy:birnlex_1299
xref: SCTID:369141009
property_value: "spatially_disjoint_from" UBERON:0001936
property_value: "spatially_disjoint_from" UBERON:0001938
property_value: "spatially_disjoint_from" UBERON:0001940
is_a: UBERON:0002789 ! regional part of posterior hypothalamic region
is_a: UBERON:0006568 ! hypothalamic nucleus
relationship: part_of UBERON:0002206 ! mammillary body
[Term]
id: UBERON:0001940
name: supramammillary nucleus
comment: This class was created automatically from a combination of ontologies
xref: ABA:SUM
xref: FMA:62347
xref: MA:0000852
xref: NIF_GrossAnatomy:birnlex_1479
xref: SCTID:369144001
property_value: "spatially_disjoint_from" UBERON:0001936
property_value: "spatially_disjoint_from" UBERON:0001938
property_value: "spatially_disjoint_from" UBERON:0001939
is_a: UBERON:0002789 ! regional part of posterior hypothalamic region
is_a: UBERON:0006568 ! hypothalamic nucleus
relationship: part_of UBERON:0002206 ! mammillary body
[Term]
id: UBERON:0001941
name: lateral habenular nucleus
comment: This class was created automatically from a combination of ontologies
synonym: "lateral habenula" EXACT []
synonym: "nucleus habenulae lateralis" EXACT [NIF_GrossAnatomy:birnlex_1438]
synonym: "nucleus habenularis lateralis" EXACT [NIF_GrossAnatomy:birnlex_1438]
synonym: "nucleus habenularis lateralis epithalami" EXACT [NIF_GrossAnatomy:birnlex_1438]
xref: ABA:LH
xref: BM:Die-Epi-Hl
xref: BTO:0002699
xref: FMA:62372
xref: MA:0000831
xref: NIF_GrossAnatomy:birnlex_1438
xref: SCTID:361538005
property_value: "spatially_disjoint_from" UBERON:0001905
property_value: "spatially_disjoint_from" UBERON:0001942
is_a: UBERON:0002757 ! regional part of epithalamus
is_a: UBERON:0006569 ! diencephalic nucleus
relationship: part_of UBERON:0001904 ! habenula
[Term]
id: UBERON:0001942
name: medial habenular nucleus
comment: This class was created automatically from a combination of ontologies
synonym: "medial habenula" EXACT []
synonym: "nucleus habenulae medialis" EXACT [NIF_GrossAnatomy:birnlex_1431]
synonym: "nucleus habenularis medialis" EXACT [NIF_GrossAnatomy:birnlex_1431]
synonym: "nucleus habenularis medialis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1431]
synonym: "nucleus habenularis medialis epithalami" EXACT [NIF_GrossAnatomy:birnlex_1431]
xref: ABA:MH
xref: BM:Die-Epi-HM
xref: BTO:0003686
xref: FMA:62373
xref: MA:0000832
xref: NIF_GrossAnatomy:birnlex_1431
property_value: "spatially_disjoint_from" UBERON:0001905
property_value: "spatially_disjoint_from" UBERON:0001941
is_a: UBERON:0002757 ! regional part of epithalamus
is_a: UBERON:0006569 ! diencephalic nucleus
relationship: part_of UBERON:0001904 ! habenula
[Term]
id: UBERON:0001943
name: midbrain tegmentum
def: "Ventral part of the midbrain, separated from the hindbrain by the isthmus[ISBN10:0471888893]. Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle[FMA] The part of the midbrain extending from the substantia nigra to the cerebral aqueduct in a horizontal section of the midbrain. It forms the floor of the midbrain that surrounds the cerebral aqueduct[WP]." [FMA:FMA, ISBN10:0471888893, Wikipedia:Midbrain_tegmentum]
comment: 'tegmentum' is used generically for the ventral part of the brainstem (ISBN10:0471888893). We use the label 'midbrain tegmentum' to denote the midbrain structure. In NIFSTD tegmentum is a composite structure and there is a separate class for midbrain tegmentum and pontine tegmentum
subset: uberon_slim
subset: vertebrate_core
synonym: "mesencephalic tegmentum" RELATED [VHOG:0001367]
synonym: "tegmentum" BROAD [ISBN10:0471888893]
synonym: "tegmentum mesencephali" EXACT LATIN [Wikipedia:Midbrain_tegmentum]
synonym: "tegmentum of midbrain" EXACT []
xref: BTO:0003388
xref: EFO:0000921
xref: EHDAA2:0004475
xref: EMAPA:18215
xref: FMA:62393
xref: http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Gray712.png/200px-Gray712.png
xref: MA:0000212
xref: MAT:0000452
xref: NIF_GrossAnatomy:birnlex_1200
xref: SCTID:362392007
xref: TAO:0000160
xref: VHOG:0001367
xref: ZFA:0000160
is_a: UBERON:0002950 ! regional part of midbrain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0010285 {source="ZFA"} ! midbrain basal plate
relationship: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0001944
name: pretectal region
def: "Region between dorsal thalamus and optic tectum[pub]. It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex. [WP,unvetted]." [ISBN10:0471888893, Wikipedia:Pretectum]
comment: part of diencephalon in ZFA - modify to adjacent here, supported by pub
subset: uberon_slim
subset: vertebrate_core
synonym: "area pretectalis" EXACT [FMA:62402, FMA:TA]
synonym: "nuclei pretectales" EXACT [FMA:62402, FMA:TA]
synonym: "pretectal area" EXACT []
synonym: "pretectal nuclei" EXACT []
synonym: "pretectum" EXACT []
xref: ABA:PRT
xref: BM:MB-Tec-PT
xref: FMA:62402
xref: MA:0001062
xref: NIF_GrossAnatomy:birnlex_703
xref: SCTID:416333003
xref: TAO:0000418
xref: ZFA:0000418
property_value: "spatially_disjoint_from" UBERON:0001715
property_value: "spatially_disjoint_from" UBERON:0001947
property_value: "spatially_disjoint_from" UBERON:0001966
property_value: "spatially_disjoint_from" UBERON:0002141
property_value: "spatially_disjoint_from" UBERON:0002438
property_value: "spatially_disjoint_from" UBERON:0002691
property_value: "spatially_disjoint_from" UBERON:0002696
property_value: "spatially_disjoint_from" UBERON:0002722
property_value: "spatially_disjoint_from" UBERON:0002995
property_value: "spatially_disjoint_from" UBERON:0003040
is_a: UBERON:0011214 ! nucleus of midbrain tectum
relationship: adjacent_to UBERON:0004703 {source="ISBN10:0471888893"} ! dorsal thalamus
relationship: part_of UBERON:0002314 {source="FMA"} ! midbrain tectum
[Term]
id: UBERON:0001945
name: superior colliculus
def: "Part of the midbrain tectum consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of superior colliculus [Wikipedia.org and Neuronames (MM)]." [NIF_GrossAnatomy:birnlex_1040, Wikipedia:Superior_colliculus]
comment: The term SC is used when discussing mammals, and OT for other vertebrates[WP]. The tectum is a layered structure, with a number of layers that vary by species. The superficial layers are sensory-related, and receive input from the eyes as well as other sensory systems.[1] The optic tectum is one of the fundamental components of the vertebrate brain, existing across the full range of species from hagfish to human.[4] (See the brain article for background.) Some aspects of the structure are very consistent, including a structure composed of a number of layers, with a dense input from the optic nerve to the superficial layers and another strong input conveying somatosensory input to deeper layers. Other aspects are highly variable, such as the total number of layers (from 3 in the African lungfish to 15 in the goldfish[5]), and the number of different types of cells (from 2 in the lungfish to 27 in the house sparrow[5]). In hagfish, lamprey, and shark it is a relatively small structure, but in teleost fish it is greatly expanded, in some cases becoming the largest structure in the brain. (See the adjoining drawing of a codfish brain.) In amphibians, reptiles, and especially birds it is also a very significant component, but in mammals it is dwarfed by the massive expansion of the cerebral cortex.
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior colliculus" EXACT []
synonym: "anterior corpus quadrigeminum" EXACT []
synonym: "corpora bigemina" RELATED []
synonym: "cranial colliculus" EXACT []
synonym: "dorsal midbrain" RELATED []
synonym: "optic lobe" RELATED []
synonym: "optic tectum" EXACT SENSU [Wikipedia:Superior_colliculus, ZFA:0000445]
synonym: "optic tectum" RELATED []
synonym: "tectal lobe" RELATED []
synonym: "tectum" RELATED []
synonym: "tectum opticum" RELATED []
xref: AAO:0010609
xref: BM:MB-Tec-SC
xref: BTO:0000965
xref: EFO:0002474
xref: EV:0100245
xref: FMA:62403
xref: GAID:576
xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png
xref: MA:0001068
xref: MESH:A.08.186.211.132.659.237.816
xref: NIF_GrossAnatomy:birnlex_1040
xref: TAO:0000445
xref: XAO:0003226
xref: ZFA:0000445
property_value: UBPROP:0000001 "The brain structure where the two separate inputs from the two eyes are combined into a single, integrated map.[AAO]" xsd:string
property_value: UBPROP:0000001 "The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0002966 ! regional part of midbrain tectum
is_a: UBERON:0006794 ! visual processing part of nervous system
relationship: part_of UBERON:0002259 ! corpora quadrigemina
[Term]
id: UBERON:0001946
name: inferior colliculus
def: "The inferior colliculi together with the superior colliculi form the eminences of the corpora quadrigemina, and also part of the tectal region of the midbrain. The inferior colliculus lies caudal to its counterpart - the superior colliculus - above the trochlear nerve, and at the base of the projection of the medial geniculate nucleus (MGN) and the lateral geniculate nucleus (LGN). The inferior colliculus is the principal midbrain nucleus of the auditory pathway and receives input from several more peripheral brainstem nuclei in the auditory pathway, as well as inputs from the auditory cortex. The inferior colliculus has three subnuclei. [WP,unvetted]." [Wikipedia:Inferior_colliculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "caudal colliculus" EXACT []
synonym: "colliculus inferior" RELATED LATIN [Wikipedia:Inferior_colliculus]
synonym: "inferior colliculi" EXACT PLURAL [EV:0100246]
synonym: "posterior colliculus" EXACT []
synonym: "posterior corpus quadrigeminum" EXACT []
xref: ABA:IC
xref: EFO:0002465
xref: EV:0100246
xref: FMA:62404
xref: GAID:575
xref: http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png
xref: MA:0001067
xref: MESH:A.08.186.211.132.659.237.364
xref: NIF_GrossAnatomy:birnlex_806
is_a: UBERON:0002966 ! regional part of midbrain tectum
relationship: part_of UBERON:0002259 ! corpora quadrigemina
[Term]
id: UBERON:0001947
name: red nucleus
def: "The red nucleus is a structure in the rostral midbrain involved in motor coordination. It comprises a caudal magnocellular and a rostral parvocellular part. [WP,unvetted]." [Wikipedia:Red_nucleus]
comment: Function notes: in animals without a significant corticospinal tract, gait is mainly controlled by the red nucleus.
subset: uberon_slim
synonym: "nucleus ruber" EXACT [TAO:0000552]
synonym: "nucleus ruber" RELATED LATIN [Wikipedia:Red_nucleus]
xref: ABA:RN
xref: BM:MB-RN
xref: EHDAA2:0004706
xref: EV:0100248
xref: FMA:62407
xref: GAID:586
xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png
xref: MA:0001063
xref: MESH:A.08.186.211.132.659.822.642
xref: NIF_GrossAnatomy:birnlex_1478
xref: SCTID:279287006
xref: TAO:0000552
xref: ZFA:0000552
property_value: "spatially_disjoint_from" UBERON:0001715
property_value: "spatially_disjoint_from" UBERON:0001944
property_value: "spatially_disjoint_from" UBERON:0001966
property_value: "spatially_disjoint_from" UBERON:0002141
property_value: "spatially_disjoint_from" UBERON:0002438
property_value: "spatially_disjoint_from" UBERON:0002691
property_value: "spatially_disjoint_from" UBERON:0002696
property_value: "spatially_disjoint_from" UBERON:0002722
property_value: "spatially_disjoint_from" UBERON:0002995
property_value: "spatially_disjoint_from" UBERON:0003040
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum
[Term]
id: UBERON:0001948
name: regional part of spinal cord
subset: uberon_slim
synonym: "spinal cord part" RELATED []
xref: ncithesaurus:Spinal_Cord_Part
xref: NIF_GrossAnatomy:birnlex_1496
xref: SCTID:244437008
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0002240
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0001949
name: gingival epithelium
def: "A stratified squamous epithelium consisting of a basal layer; it is keratinized or parakeratinized[BTO]." [BTO:0004998]
synonym: "epithelial tissue of gingiva" EXACT [OBOL:automatic]
synonym: "epithelium of gingiva" EXACT []
synonym: "gingiva epithelial tissue" EXACT [OBOL:automatic]
synonym: "gingiva epithelium" EXACT [OBOL:automatic]
xref: BTO:0004998
xref: FMA:62423
xref: MA:0001576
xref: ncithesaurus:Gingival_Epithelium
is_a: UBERON:0000486 ! multilaminar epithelium
is_a: UBERON:0003350 ! epithelium of mucosa
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001828
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001828 ! gingiva
relationship: part_of UBERON:0001828 ! gingiva
[Term]
id: UBERON:0001950
name: neocortex
def: "The neocortex is a part of the brain of mammals. It is the outer layer of the cerebral hemispheres, and made up of six layers, labelled I to VI (with VI being the innermost and I being the outermost). The neocortex is part of the cerebral cortex (along with the archicortex and paleocortex, which are cortical parts of the limbic system). It is involved in higher functions such as sensory perception, generation of motor commands, spatial reasoning, conscious thought and, in humans, language. Other names for the neocortex include neopallium and isocortex ('equal rind'). [WP,unvetted]." [Wikipedia:Neocortex]
subset: uberon_slim
synonym: "cerebral neocortex" EXACT []
synonym: "homogenetic cortex" EXACT DEPRECATED [ISBN10:0471888893]
synonym: "homotypical cortex" EXACT [NIF_GrossAnatomy:birnlex_2547]
synonym: "isocortex" EXACT []
synonym: "isocortex (sensu lato)" EXACT [FMA:62429]
synonym: "neopallial cortex" EXACT []
synonym: "neopallium" EXACT []
synonym: "nonolfactory cortex" RELATED [BTO:0000920]
xref: ABA:Isocortex
xref: BTO:0000920
xref: EHDAA2:0004662
xref: FMA:62429
xref: GAID:677
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Neocortex.jpg
xref: MA:0002754
xref: MESH:A.08.186.211.730.885.213.420
xref: NIF_GrossAnatomy:birnlex_2547
property_value: "spatially_disjoint_from" UBERON:0002264
property_value: "spatially_disjoint_from" UBERON:0002421
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0001951
name: epithelium of nasopharynx
alt_id: UBERON:0003237
def: "An epithelium that is part of a nasopharynx [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "epithelial tissue of nasopharynx" EXACT [OBOL:automatic]
synonym: "epithelial tissue of rhinopharynx" EXACT [OBOL:automatic]
synonym: "epithelium of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "epithelium of rhinopharynx" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx epithelium" EXACT [OBOL:automatic]
synonym: "nasopharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "nasopharynx epithelium" EXACT []
synonym: "rhinopharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "rhinopharynx epithelium" EXACT [OBOL:automatic]
xref: BTO:0004480
xref: EHDAA2:0001241
xref: EHDAA:7090
xref: EMAPA:17672
xref: FMA:62452
xref: MA:0001865
xref: ncithesaurus:Nasopharynx_Epithelium
xref: VHOG:0001038
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003351 ! pharyngeal epithelium
is_a: UBERON:0004814 ! upper respiratory tract epithelium
relationship: part_of UBERON:0001728
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001728 ! nasopharynx
relationship: part_of UBERON:0001728 ! nasopharynx
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium
[Term]
id: UBERON:0001952
name: epithelium of oropharynx
def: "An epithelium that is part of a oropharynx [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "oropharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "oropharynx epithelium" EXACT [MA:0001605]
xref: EHDAA2:0004083
xref: FMA:62453
xref: MA:0001605
xref: ncithesaurus:Oropharynx_Epithelium
is_a: UBERON:0000486 ! multilaminar epithelium
is_a: UBERON:0003351 ! pharyngeal epithelium
is_a: UBERON:0004808 ! gastrointestinal system epithelium
relationship: part_of UBERON:0001729
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001729 ! oropharynx
relationship: part_of UBERON:0001729 ! oropharynx
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium
[Term]
id: UBERON:0001953
name: presubiculum
def: "Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted]." [Wikipedia:Brodmann_area_27]
comment: This class was created automatically from a combination of ontologies
synonym: "area 27 of Brodmann" EXACT []
synonym: "Brodmann area 27" EXACT []
synonym: "presubiculum (cajal)" EXACT [NIF_GrossAnatomy:birnlex_1108]
xref: ABA:PRE
xref: BM:Tel-Cx-PSB
xref: FMA:62486
xref: http://upload.wikimedia.org/wikipedia/commons/5/5f/Brodmann_Cytoarchitectonics_27.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Brodmann_Cytoarchitectonics_27.png/200px-Brodmann_Cytoarchitectonics_27.png
xref: MA:0000923
xref: NIF_GrossAnatomy:birnlex_1108
property_value: "spatially_disjoint_from" UBERON:0002191
property_value: "spatially_disjoint_from" UBERON:0002728
property_value: "spatially_disjoint_from" UBERON:0004683
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0001954
name: Ammon's horn
alt_id: UBERON:0003940
alt_id: UBERON:0004165
def: "A paired structure, with mirror-image halves in the left and right sides of the brain. The hippocampus is closely associated with the cerebral cortex, and in primates is located in the medial temporal lobe, underneath the cortical surface. It is shaped like a curved tube[WP]." [Wikipedia:Hippocampus]
comment: WP: Non-mammalian species do not have a brain structure that looks like the mammalian hippocampus, but they have one that is considered homologous to it. The hippocampus, as pointed out above, is essentially the medial edge of the cortex. Only mammals have a fully developed cortex, but the structure it evolved from, called the pallium, is present in all vertebrates, even the most primitive ones such as the lamprey or hagfish.[82] The pallium is usually divided into three zones: medial, lateral, and dorsal. The medial pallium forms the precursor of the hippocampus. It does not resemble the hippocampus visually, because the layers are not warped into an S shape or enwrapped by the dentate gyrus, but the homology is indicated by strong chemical and functional affinities. There is now evidence that these hippocampal-like structures are involved in spatial cognition in birds, reptiles, and fish. In birds, the correspondence is sufficiently well established that most anatomists refer to the medial pallial zone as the "avian hippocampus". The story for fish is more complex. In teleost fish (which make up the great majority of existing species), the forebrain is distorted in comparison to other types of vertebrates: most neuroanatomists believe that the teleost forebrain is essentially everted, like a sock turned inside-out, so that structures that lie in the interior, next to the ventricles, for most vertebrates, are found on the outside in teleost fish, and vice versa.[86] One of the consequences of this is that the medial pallium ("hippocampal" zone) of a typical vertebrate is thought to correspond to the lateral pallium of a typical fish. Several types of fish (particularly goldfish) have been shown experimentally to have strong spatial memory abilities, even forming "cognitive maps" of the areas they inhabit.[80] There is evidence that damage to the lateral pallium impairs spatial memory.
subset: uberon_slim
synonym: "ammon gyrus" EXACT [GO:0021541]
synonym: "ammon horn" EXACT [NIF_GrossAnatomy:birnlex_721]
synonym: "Ammon's horn" EXACT [GO:0021541]
synonym: "cornu ammonis" RELATED [GO:0021541]
synonym: "hippocampus" RELATED [MA:0000191]
synonym: "hippocampus major" EXACT []
synonym: "hippocampus proper" EXACT []
synonym: "hippocampus proprius" EXACT [FMA:62493, FMA:TA]
xref: ABA:CA
xref: BM:Tel-CAM
xref: BTO:0003705
xref: EFO:0000530
xref: EHDAA2:0004443
xref: EMAPA:19039
xref: EMAPA:19148
xref: EV:0100180
xref: FMA:62493
xref: GAID:623
xref: http://scalablebrainatlas.incf.org/services/thumbnail.php?template=ABA07&size=L&dim=2d3d&format=png®ion=CA
xref: http://upload.wikimedia.org/wikipedia/commons/2/2e/Gray739-emphasizing-hippocampus.png
xref: MA:0000191
xref: MAT:0000114
xref: MESH:A.08.186.211.577.405
xref: MIAA:0000114
xref: ncithesaurus:Cornu_Ammonis
xref: ncithesaurus:Hippocampus
xref: NIF_GrossAnatomy:birnlex_721
xref: OpenCyc:Mx4rv3piFJwpEbGdrcN5Y29ycA
xref: SCTID:361561007
xref: VHOG:0001177
property_value: "spatially_disjoint_from" UBERON:0001885
property_value: "spatially_disjoint_from" UBERON:0002601
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000349 {source="FMA"} ! limbic system
relationship: part_of UBERON:0002421 {source="ABA"} ! hippocampal formation
relationship: part_of UBERON:0002600 {source="FMA"} ! limbic lobe
[Term]
id: UBERON:0001955
name: epithelium of respiratory bronchiole
def: "An epithelium that is part of a respiratory bronchiole [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchiolus respiratorius epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchiolus respiratorius epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "epithelial tissue of respiratory bronchiole" EXACT [OBOL:automatic]
synonym: "epithelium of bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole epithelial tissue" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole epithelium" EXACT []
xref: FMA:62498
xref: MA:0001773
xref: ncithesaurus:Respiratory_Bronchiole_Epithelium
is_a: UBERON:0002051 ! epithelium of bronchiole
relationship: part_of UBERON:0002188
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002188 ! respiratory bronchiole
relationship: part_of UBERON:0002188 ! respiratory bronchiole
[Term]
id: UBERON:0001956
name: cartilage of bronchus
def: "the hyaline cartilaginous structures that support the bronchi, present as irregular rings in the larger bronchi (and not as regular as in the trachea), and as small plates and islands in the smaller bronchi; as the branching continues through the bronchial tree, the amount of hyaline cartilage in the walls decreases until it is absent in the smallest bronchioles[MP]." [MP:0010988]
synonym: "bronchi cartilage" EXACT [OBOL:automatic]
synonym: "bronchial cartilage" EXACT []
synonym: "bronchial cartilage ring" EXACT [MP:0010988]
synonym: "bronchial trunk cartilage" EXACT [OBOL:automatic]
synonym: "bronchus cartilage" EXACT []
synonym: "cartilage of bronchi" EXACT [OBOL:automatic]
synonym: "cartilage of bronchial trunk" EXACT [OBOL:automatic]
synonym: "cartilagines bronchiales" EXACT PLURAL []
xref: FMA:62649
xref: MA:0001835
xref: ncithesaurus:Bronchus_Cartilage
xref: SCTID:278980009
is_a: UBERON:0001994 {source="MP"} ! hyaline cartilage
is_a: UBERON:0003592 ! bronchus connective tissue
is_a: UBERON:0003603 ! lower respiratory tract cartilage
relationship: part_of UBERON:0002185
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0001957
name: submucosa of bronchus
def: "A submucosa that is part of a bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchi submucosa" EXACT [OBOL:automatic]
synonym: "bronchial submucosa" EXACT []
synonym: "bronchial trunk submucosa" EXACT [OBOL:automatic]
synonym: "bronchus submucosa" EXACT []
synonym: "submucosa of bronchi" EXACT [OBOL:automatic]
synonym: "submucosa of bronchial trunk" EXACT [OBOL:automatic]
xref: BTO:0002108
xref: FMA:62653
xref: MA:0001837
xref: ncithesaurus:Bronchus_Submucosa
xref: SCTID:85546005
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004777 ! respiratory system submucosa
relationship: part_of UBERON:0002185
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0001958
name: epithelium of terminal bronchiole
def: "An epithelium that is part of a terminal bronchiole [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchiolus terminalis epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchiolus terminalis epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "epithelial tissue of terminal bronchiole" EXACT [OBOL:automatic]
synonym: "epithelium of bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "terminal bronchiole epithelial tissue" EXACT [OBOL:automatic]
synonym: "terminal bronchiole epithelium" EXACT []
xref: FMA:62794
xref: MA:0001774
xref: ncithesaurus:Terminal_Bronchiole_Epithelium
is_a: UBERON:0002051 ! epithelium of bronchiole
relationship: part_of UBERON:0002187
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002187 ! terminal bronchiole
relationship: part_of UBERON:0002187 ! terminal bronchiole
[Term]
id: UBERON:0001959
name: white pulp of spleen
def: "The white pulp contains T cells, B cells and accessory cells. The function of the white pulp is to mount an immunological response to antigens within the blood. The white pulp is present in the form of a periarteriolar lymphoid sheath. This sheath contains B cell follicles and T cells. At the edge of the T zone is a region known as the marginal zone where larger lymphocytes and antigen presenting dendritic cells are located." [Wikipedia:White_pulp]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "noduli lymphoidei splenici" RELATED LATIN [Wikipedia:White_pulp]
synonym: "pulpa alba" EXACT [FMA:62805, FMA:TA]
synonym: "spleen white pulp" EXACT []
synonym: "splenic white pulp" EXACT []
synonym: "white pulp" EXACT []
xref: FMA:62805
xref: http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1191.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png
xref: MA:0000762
xref: ncithesaurus:Splenic_White_Pulp
is_a: UBERON:1000023 ! spleen pulp
[Term]
id: UBERON:0001960
name: periarterial lymphatic sheath
def: "the area of the spleen in which T cells surround the central arteriole" [MP:0002358]
comment: AO notes: FMA distinguishes periarterial (PALS) from periarteriolar (FMA:62806)
synonym: "PALS" EXACT [MP:0002358]
synonym: "periarterial lymphoid sheath" EXACT []
synonym: "periarteriolar sheath" EXACT [MP:0002358]
synonym: "spleen periarteriolar lymphatic sheath" EXACT []
synonym: "splenic periarteriolar lymphoid sheath" RELATED [MP:0002358]
synonym: "T cell domain of the splenic white pulp" EXACT [MP:0002358]
xref: FMA:62810
xref: MA:0000765
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0010393 ! T cell domain
relationship: part_of UBERON:0001959
intersection_of: UBERON:0010393 ! T cell domain
intersection_of: part_of UBERON:0001959 ! white pulp of spleen
relationship: part_of UBERON:0001959 ! white pulp of spleen
[Term]
id: UBERON:0001961
name: mucosa-associated lymphoid tissue
def: "diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "epithelio-lymphoid tissue" EXACT []
synonym: "MALT" EXACT []
synonym: "mucosa associated lymphatic tissue" EXACT []
synonym: "mucosa associated lymphoid tissue" EXACT []
synonym: "mucosa-associated lymphoid tissue" EXACT [GO:0048537]
synonym: "mucosal-associated lymphatic tissue" EXACT [GO:0048537]
synonym: "mucosal-associated lymphoid tissue" EXACT [GO:0048537]
xref: FMA:62819
xref: MA:0000140
xref: ncithesaurus:Mucosa-Associated_Lymphoid_Tissue
is_a: UBERON:0001744 ! lymphoid tissue
relationship: part_of UBERON:0000344 ! mucosa
[Term]
id: UBERON:0001962
name: gut-associated lymphoid tissue
def: "Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue]
subset: uberon_slim
synonym: "GALT" RELATED []
synonym: "gut associated lymphoid tissue" EXACT []
xref: FMA:62820
xref: MA:0000136
xref: ncithesaurus:Gut_Associated_Lymphoid_Tissue
is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0001963
name: bronchial-associated lymphoid tissue
comment: This class was created automatically from a combination of ontologies
synonym: "BALT" RELATED []
synonym: "bronchus associated lymphoid tissue" EXACT []
xref: FMA:62821
xref: MA:0000135
xref: ncithesaurus:Bronchus-Associated_Lymphoid_Tissue
is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue
[Term]
id: UBERON:0001964
name: least splanchnic nerve
def: "Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and visceral afferent fibers. There are three main thoracic splanchnic nerves: The nerve's origins can be remembered by the '4-3-2 rule', accounting for the number of ganglia giving rise to each nerve. However, different sources define the nerves in different ways, so this rule may not always be reliable. [WP,unvetted]." [Wikipedia:Thoracic_splanchnic_nerves]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "least thoracic splanchnic nerve" EXACT []
synonym: "lowest splanchnic nerve" EXACT []
synonym: "nervus splanchnicus imus" EXACT [FMA:6283, FMA:TA]
synonym: "ramus renalis nervus splanchnici minoris" EXACT [FMA:6283, FMA:TA]
synonym: "renal branch of lesser splanchnic nerve" EXACT []
synonym: "renal nerve" EXACT []
xref: EMAPA:29691
xref: FMA:6283
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png
xref: MA:0002635
xref: SCTID:280506004
is_a: UBERON:0003429 ! abdomen nerve
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002113 {source="MA"} ! kidney
[Term]
id: UBERON:0001965
name: substantia nigra pars compacta
def: "Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM)[NIF]." [NIF_GrossAnatomy:birnlex_990, Wikipedia:Substantia_nigra_pars_compacta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "compact part of substantia nigra" EXACT []
synonym: "pars compacta" EXACT []
synonym: "pars compacta substantiae nigrae" EXACT [FMA:62907, FMA:TA]
synonym: "SNpc" EXACT []
synonym: "substantia nigra compact part" EXACT [NIF_GrossAnatomy:birnlex_990]
synonym: "substantia nigra compacta" EXACT [NIF_GrossAnatomy:birnlex_990]
synonym: "substantia nigra, compact part" EXACT []
xref: ABA:SNc
xref: BM:MB-SNc
xref: BTO:0003749
xref: FMA:62907
xref: MA:0001064
xref: ncithesaurus:Pars_Compacta
xref: NIF_GrossAnatomy:birnlex_990
property_value: "spatially_disjoint_from" UBERON:0002142
property_value: "spatially_disjoint_from" UBERON:0007412
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002038 ! substantia nigra
[Term]
id: UBERON:0001966
name: substantia nigra pars reticulata
def: "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)[NLex]." [Neurolex:Substantia_nigra_pars_reticulata, Wikipedia:Pars_reticulata]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pars reticularis substantiae nigrae" EXACT [FMA:62908, FMA:TA]
synonym: "pars reticulata" EXACT []
synonym: "reticular part of substantia nigra" EXACT []
synonym: "substantia nigra, reticular part" EXACT []
xref: ABA:SNr
xref: BM:MB-SNr
xref: BTO:0003750
xref: FMA:62908
xref: MA:0001066
xref: NIF_GrossAnatomy:birnlex_968
property_value: "spatially_disjoint_from" UBERON:0001715
property_value: "spatially_disjoint_from" UBERON:0001944
property_value: "spatially_disjoint_from" UBERON:0001947
property_value: "spatially_disjoint_from" UBERON:0002141
property_value: "spatially_disjoint_from" UBERON:0002438
property_value: "spatially_disjoint_from" UBERON:0002691
property_value: "spatially_disjoint_from" UBERON:0002696
property_value: "spatially_disjoint_from" UBERON:0002722
property_value: "spatially_disjoint_from" UBERON:0002995
property_value: "spatially_disjoint_from" UBERON:0003040
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002038 ! substantia nigra
[Term]
id: UBERON:0001967
name: reticular lamina
def: "a thin extracellular layer that sometimes lies below the basal lamina, is composed chiefly of collagenous fibers, and serves to anchor the basal lamina to underlying connective tissue." [http://mw1.merriam-webster.com/medical/reticular%20lamina, Wikipedia:Reticular_lamina]
comment: todo - use GO?
subset: uberon_slim
synonym: "fibroreticular lamina" EXACT []
synonym: "lamina fibroreticularis" EXACT []
synonym: "reticular membrane" RELATED []
xref: FMA:62924
is_a: UBERON:0005764 {source="FMA"} ! acellular membrane
relationship: part_of UBERON:0005769 {source="FMA"} ! basement membrane
[Term]
id: UBERON:0001968
name: semen
def: "Body substance which consists of spermatozoa and seminal plasma.[FMA]" [FMA:FMA, Wikipedia:Semen]
comment: Taxon notes: Note that in this ontology, semen is defined as the sum of sperm and seminal fluid, where seminal fluid is defined a taxonomically generic way (see comments for UBERON:0006530).
subset: uberon_slim
xref: BTO:0001230
xref: FMA:62966
xref: GAID:1169
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/40/Human_semen_in_petri_dish2.jpg/180px-Human_semen_in_petri_dish2.jpg
xref: MA:0002522
xref: MESH:A.12.200.732
xref: ncithesaurus:Male_Genital_System_Fluid_or_Secretion
xref: ncithesaurus:Semen
xref: OpenCyc:Mx4rvgC-zpwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
relationship: has_part UBERON:0006530 ! seminal fluid
[Term]
id: UBERON:0001969
name: blood plasma
def: "Body substance in liquid state contained in the lumen of arterial and venous trees, blood capillary and the cardiac chambers; constitutes the liquid phase of blood.[FMA]" [FMA:FMA, Wikipedia:Blood_plasma]
subset: uberon_slim
synonym: "plasma" EXACT []
synonym: "portion of blood plasma" EXACT []
synonym: "portion of plasma" EXACT []
xref: BTO:0000131
xref: EFO:0001905
xref: FMA:62970
xref: GAID:1178
xref: MA:0002501
xref: MAT:0000052
xref: MESH:A.12.207.152.693
xref: MIAA:0000052
xref: ncithesaurus:Plasma
xref: OpenCyc:Mx4rEg4ZYrIbEduAAAAOpmP6tw
is_a: UBERON:0000179 ! haemolymphatic fluid
relationship: part_of UBERON:0000178 ! blood
[Term]
id: UBERON:0001970
name: bile
def: "a bitter-tasting, dark green to yellowish brown fluid, produced by the liver of most vertebrates, that aids the process of digestion of lipids in the small intestine. In many species, bile is stored in the gallbladder and upon eating is discharged into the duodenum. Bile is a composition of the following materials: water (85%), bile salts (10%), mucus and pigments (3%), fats (1%), inorganic salts (0.7%) and cholesterol (0.3%)[WP]." [Wikipedia:Bile]
subset: uberon_slim
synonym: "fel" RELATED [BTO:0000121]
synonym: "gall" RELATED [BTO:0000121]
xref: BTO:0000121
xref: ENVO:02000023
xref: FMA:62971
xref: GAID:1157
xref: galen:Bile
xref: MA:0002513
xref: MESH:A.12.200.087
xref: ncithesaurus:Bile
is_a: UBERON:0000456 ! bodily secretion
[Term]
id: UBERON:0001971
name: gastric juice
def: "." [Wikipedia:Gastric_juice]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "stomach secretion" EXACT []
synonym: "succus gastricus" RELATED [BTO:0000501]
xref: BTO:0000501
xref: FMA:62972
xref: GAID:1160
xref: galen:GastricJuice
xref: MA:0002519
xref: MESH:A.12.200.307
xref: ncithesaurus:Gastric_Secretion
is_a: UBERON:0000456 ! bodily secretion
[Term]
id: UBERON:0001972
name: submucosa of esophagus
def: "A submucosa that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophageal submucosa" EXACT []
synonym: "esophagus submucosa" EXACT []
synonym: "gullet submucosa" EXACT [OBOL:automatic]
synonym: "oesophagus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of esophagus" EXACT []
synonym: "submucosa of gullet" EXACT [OBOL:automatic]
synonym: "submucosa of oesophagus" EXACT [OBOL:automatic]
synonym: "tela submucosa oesophageae" EXACT [FMA:62997, FMA:TA]
xref: BTO:0002109
xref: FMA:62997
xref: MA:0002724
xref: SCTID:362128009
is_a: UBERON:0000009 ! submucosa
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 ! wall of esophagus
[Term]
id: UBERON:0001973
name: substance of tooth
def: "Body substance in solid state produced by odontoblasts, amyloblasts or cementoblasts.[FMA]" [FMA:63001]
comment: note the asserted dual parentage. This is deliberate, pending better definitions of the distinction between substance and tissue
subset: uberon_slim
synonym: "portion of substance of tooth" EXACT [FMA:63001]
synonym: "tooth substance" EXACT []
xref: FMA:63001
xref: MA:0002540
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0001974
name: lamina propria of esophagus
def: "A lamina propria that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "esophagus lamina propria" EXACT []
synonym: "esophagus lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "esophagus lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "gullet lamina propria" EXACT [OBOL:automatic]
synonym: "gullet lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "gullet lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of esophagus" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of gullet" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of oesophagus" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of esophagus" EXACT []
synonym: "lamina propria mucosae of gullet" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of oesophagus" EXACT [OBOL:automatic]
synonym: "lamina propria of gullet" EXACT [OBOL:automatic]
synonym: "lamina propria of oesophagus" EXACT [OBOL:automatic]
synonym: "oesophagus lamina propria" RELATED []
synonym: "oesophagus lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "oesophagus lamina propria mucosae" EXACT [OBOL:automatic]
xref: EMAPA:26987
xref: EMAPA:27003
xref: FMA:63050
xref: MA:0001568
xref: ncithesaurus:Esophageal_Lamina_Propria
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0002469 ! esophagus mucosa
[Term]
id: UBERON:0001975
name: serosa of esophagus
def: "A serous membrane that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "esophagus serosa" EXACT []
synonym: "esophagus serous membrane" EXACT [OBOL:automatic]
synonym: "gullet serosa" EXACT [OBOL:automatic]
synonym: "gullet serous membrane" EXACT [OBOL:automatic]
synonym: "oesophagus serosa" RELATED []
synonym: "oesophagus serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of abdominal part of esophagus" EXACT []
synonym: "serosa of gullet" EXACT [OBOL:automatic]
synonym: "serosa of oesophagus" EXACT []
synonym: "serous coat of oesophagus" EXACT []
synonym: "serous membrane of esophagus" EXACT [OBOL:automatic]
synonym: "serous membrane of gullet" EXACT [OBOL:automatic]
synonym: "serous membrane of oesophagus" EXACT [OBOL:automatic]
synonym: "tunica serosa oesophageae" EXACT [FMA:63057, FMA:TA]
xref: FMA:63057
xref: MA:0001571
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 ! wall of esophagus
[Term]
id: UBERON:0001976
name: epithelium of esophagus
comment: todo check epithelium types: in FMA: Nonkeratinizing stratified squamous epithelium; mouse has basal and squamous subtypes; in ZFA it is columnar
subset: uberon_slim
subset: vertebrate_core
synonym: "epithelial tissue of esophagus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gullet" EXACT [OBOL:automatic]
synonym: "epithelial tissue of oesophagus" EXACT [OBOL:automatic]
synonym: "epithelium of gullet" EXACT [OBOL:automatic]
synonym: "epithelium of oesophagus" EXACT [OBOL:automatic]
synonym: "esophageal epithelium" EXACT []
synonym: "esophagus epithelial tissue" EXACT [OBOL:automatic]
synonym: "esophagus epithelium" EXACT []
synonym: "gullet epithelial tissue" EXACT [OBOL:automatic]
synonym: "gullet epithelium" EXACT [OBOL:automatic]
synonym: "oesophagus epithelial tissue" EXACT [OBOL:automatic]
synonym: "oesophagus epithelium" RELATED []
xref: BTO:0001578
xref: EFO:0003041
xref: EHDAA2:0001287
xref: EMAPA:16835
xref: FMA:63063
xref: MA:0001565
xref: ncithesaurus:Esophageal_Epithelium
xref: TAO:0001499
xref: ZFA:0001499
property_value: UBPROP:0000001 "Simple columnar epithelium that lines the esophagus. Chen et al, 2007.[TAO]" xsd:string
is_a: UBERON:0003350 ! epithelium of mucosa
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0002469 {source="FMA"} ! esophagus mucosa
[Term]
id: UBERON:0001977
name: serum
def: "Body substance derived from plasma by the elimination of fibrinogen.[FMA]" [FMA:FMA, Wikipedia:Serum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "blood serum" EXACT []
xref: BTO:0000133
xref: BTO:0001239
xref: FMA:63083
xref: MA:0002502
xref: ncithesaurus:Serum
is_a: UBERON:0000179 ! haemolymphatic fluid
relationship: part_of UBERON:0001969 ! blood plasma
[Term]
id: UBERON:0001978
name: parenchyma of pancreas
comment: This class was created automatically from a combination of ontologies
synonym: "pancreas parenchyma" EXACT []
synonym: "pancreatic parenchyma" EXACT []
xref: FMA:63120
xref: MA:0000724
xref: SCTID:371401008
xref: VHOG:0001430
is_a: UBERON:0000353 ! parenchyma
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001979
name: venule
def: "Subdivision of venous tree (organ) which is directly continuous with the capillary vessel." [Wikipedia:Venule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "venula" RELATED LATIN [Wikipedia:Venule]
xref: BTO:0002626
xref: FMA:63130
xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Illu_capillary.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Illu_capillary.jpg/200px-Illu_capillary.jpg
xref: MA:0000071
xref: MESH:A.07.231.432.952
xref: ncithesaurus:Venule
xref: SCTID:341687009
xref: TAO:0005315
xref: VHOG:0001765
xref: ZFA:0005315
property_value: UBPROP:0000001 "Multi-tissue structure part of the blood vasculature formed by the anastomosis of capillaries. Venules carry blood toward the heart.[TAO]" xsd:string
is_a: UBERON:0003920 ! venous blood vessel
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001980
name: arteriole
def: "the smallest division of the artery located between the muscular arteries and the capillaries[GO]. Subdivision of arterial tree (organ) which is directly continuous with capillary vessel[FMA]." [FMA:63182, GO:0014830, Wikipedia:Arteriole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "arteriola" RELATED LATIN [Wikipedia:Arteriole]
xref: AAO:0010253
xref: BTO:0001997
xref: FMA:63182
xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Illu_capillary.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Illu_capillary.jpg/200px-Illu_capillary.jpg
xref: MA:0000063
xref: MESH:A.07.231.114.060
xref: ncithesaurus:Arteriole
xref: SCTID:337724002
xref: TAO:0002138
xref: VHOG:0001763
xref: ZFA:0005255
property_value: UBPROP:0000001 "Multi-tissue structure part of the blood vasculature, feeds into capillaries. Arterioles carry blood away from the heart.[TAO]" xsd:string
property_value: UBPROP:0000001 "Small, terminal branch of an artery which generally connects to capillaries.[AAO]" xsd:string
is_a: UBERON:0003509 ! arterial blood vessel
relationship: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0001981
name: blood vessel
def: "A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel]
comment: note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX. Taxon notes: annelids have blood vessels, but this class is not applicable to annelids.
subset: uberon_slim
subset: vertebrate_core
synonym: "region of vascular tree organ" EXACT [FMA:50722]
synonym: "vas sanguineum" RELATED LATIN [Wikipedia:Blood_vessel]
synonym: "vascular tree organ region" EXACT [FMA:50722]
xref: AAO:0011004
xref: AEO:0000207
xref: BTO:0001102
xref: EFO:0000817
xref: EHDAA2:0003252
xref: EHDAA:240
xref: FMA:50722
xref: FMA:63183
xref: GAID:169
xref: http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png
xref: MA:0000060
xref: MAT:0000393
xref: MESH:A.07.231
xref: ncithesaurus:Blood_Vessel
xref: NIF_GrossAnatomy:nlx_anat_090901
xref: OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA
xref: SCTID:361097006
xref: TAO:0002137
xref: VHOG:0001250
xref: XAO:0001011
xref: ZFA:0005314
property_value: UBPROP:0000001 "Any of the vessels through which blood circulates in the body.[AAO]" xsd:string
is_a: UBERON:0000055 ! vessel
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0007500 {source="EHDAA2"} ! epithelial tube open at both ends
relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm
relationship: develops_from UBERON:0006965 {source="GO:0072360"} ! vascular cord
relationship: has_part UBERON:0000178 ! blood
relationship: part_of UBERON:0004537 ! blood vasculature
[Term]
id: UBERON:0001982
name: capillary
def: "Microvessel of the blood circulation system lined with vascular endothelial cells[ZFA]. Any of the smallest blood vessels connecting arterioles with venules." [NLM:capillary, Wikipedia:Capillary]
subset: uberon_slim
subset: vertebrate_core
synonym: "blood capillary" EXACT []
synonym: "capillary vessel" EXACT []
xref: AAO:0010252
xref: BTO:0002045
xref: EFO:0001906
xref: EMAPA:28039
xref: EMAPA:28075
xref: EV:0100035
xref: FMA:63194
xref: http://upload.wikimedia.org/wikipedia/commons/2/2f/A_red_blood_cell_in_a_capillary\,_pancreatic_tissue_-_TEM.jpg
xref: MA:0000065
xref: MESH:A.07.231.432.410
xref: ncithesaurus:Capillary
xref: NIF_GrossAnatomy:nlx_anat_090902
xref: OpenCyc:Mx4rvWEU-5wpEbGdrcN5Y29ycA
xref: TAO:0005250
xref: VHOG:0001253
xref: XAO:0000116
xref: ZFA:0005250
property_value: UBPROP:0000001 "Any of the tiny blood vessels connecting the arterioles to the venules.[AAO]" xsd:string
is_a: UBERON:0001981 ! blood vessel
is_a: UBERON:0010523 {source="ZFA"} ! microcirculatory vessel
[Term]
id: UBERON:0001983
name: crypt of lieberkuhn
def: "A gland found in the epithelial lining of the small intestine and colon." [Wikipedia:Intestinal_gland]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
synonym: "intestinal gland" BROAD [Wikipedia:Crypts_of_Lieberkuhn]
synonym: "lieberkuhn crypt" EXACT []
xref: FMA:63621
xref: http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Small_intestine_low_mag.jpg/200px-Small_intestine_low_mag.jpg
xref: MA:0001535
xref: ncithesaurus:Crypts_of_the_Lieberkuhn
is_a: UBERON:0000333 ! intestinal gland
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0001984
name: crypt of lieberkuhn of large intestine
def: "A crypt of lieberkuhn that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "intestinal gland of large intestine" EXACT [OBOL:automatic]
synonym: "large intestinal crypt of lieberkuhn" EXACT []
synonym: "large intestine crypt of lieberkuhn" EXACT []
synonym: "large intestine intestinal gland" EXACT [OBOL:automatic]
synonym: "large intestine lieberkuhn crypt" EXACT [OBOL:automatic]
synonym: "lieberkuhn crypt of large intestine" EXACT [OBOL:automatic]
xref: FMA:63622
xref: MA:0001544
xref: ncithesaurus:Large_Intestinal_Crypt_of_the_Lieberkuhn
is_a: UBERON:0001983 ! crypt of lieberkuhn
relationship: part_of UBERON:0000059
intersection_of: UBERON:0001983 ! crypt of lieberkuhn
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001207 ! mucosa of large intestine
[Term]
id: UBERON:0001985
name: corneal endothelium
def: "A monolayer of specialized, flattened, mitochondria-rich cells that lines the posterior surface of the cornea and faces the anterior chamber of the eye[WP]." [Wikipedia:Corneal_endothelium]
subset: uberon_slim
subset: vertebrate_core
synonym: "cornea endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of cornea" EXACT [OBOL:automatic]
synonym: "epithelium posterius corneae" RELATED LATIN [Wikipedia:Corneal_endothelium]
xref: FMA:63882
xref: GAID:891
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Gray871.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray871.png/200px-Gray871.png
xref: MA:0001242
xref: MESH:A.09.371.060.067.318
xref: ncithesaurus:Corneal_Endothelium
xref: SCTID:368827009
xref: TAO:0002186
xref: ZFA:0001687
is_a: UBERON:0001772 ! corneal epithelium
is_a: UBERON:0001986 ! endothelium
relationship: part_of UBERON:0000964
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0000964 ! cornea
relationship: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0001986
name: endothelium
def: "A layer of epithelium that lines the heart, blood vessels (endothelium, vascular), lymph vessels (endothelium, lymphatic), and the serous cavities of the body[MESH]. Simple squamous epithelium which lines blood and lymphatic vessels and the heart[FMA]" [FMA:63916, MESH:A.10.272.491]
comment: The term ‘‘endothelium’’ has been either restricted to the continuous cell layer of the vertebrates, as we are assuming here, or applied to all the cells able to adhere to the luminal surface of the vascular basement membrane (Casley-Smith 1980)
subset: uberon_slim
xref: BTO:0000393
xref: EFO:0002548
xref: EMAPA:18578
xref: EMAPA:19063
xref: FMA:63916
xref: GAID:520
xref: galen:Endothelium
xref: MESH:A.10.272.491
xref: ncithesaurus:Endothelium
xref: ncithesaurus:Vascular_Endothelium
xref: SCTID:27168002
is_a: UBERON:0000487 ! simple squamous epithelium
[Term]
id: UBERON:0001987
name: placenta
def: "organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]. The fetal portion of the placenta is known as the villous chorion. The maternal portion is known as the decidua basalis. The two portions are held together by anchoring villi that are anchored to the decidua basalis by the cytotrophoblastic shell." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm, Wikipedia:Placenta]
comment: Taxon notes: Eutherians: In eutherians, the chorioallantoic membrane of the fetus establishes intimate contact with the adjacent vascular wall of the mother's uterus to produce the placenta, a composite structure formed in part from tissues of the fetus and in part from tissues of the mother [ISBN10:0073040584 "Vertebrates, Kardong"]. TODO - is taxon restriction too strict, even if we restrict def to allantoic placenta? - WP says: also found in some snakes and lizards with varying levels of development up to mammalian levels. Pough et al. 1992. Herpetology: Third Edition. Pearson Prentice Hall:Pearson Education, Inc., 2002. // See also: doi:10.1002/jmor.11011 // Marsupials possess only a rudimentary placenta, with reduced nutrient and oxygen exchanging capabilities.
subset: organ_slim
subset: uberon_slim
synonym: "allantoic placenta" EXACT [ISBN10:0073040584]
synonym: "eutherian placenta" EXACT []
xref: BTO:0001078
xref: EFO:0001407
xref: EV:0100119
xref: FMA:63934
xref: GAID:379
xref: http://upload.wikimedia.org/wikipedia/commons/f/f1/Placenta.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Placenta.jpg/200px-Placenta.jpg
xref: MA:0000386
xref: MAT:0000279
xref: MESH:A.16.759
xref: MIAA:0000279
xref: ncithesaurus:Placenta
xref: OpenCyc:Mx4rvv4zZ5wpEbGdrcN5Y29ycA
xref: SCTID:181455002
xref: VHOG:0001266
is_a: UBERON:0000062 ! organ
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0005156 ! reproductive structure
relationship: develops_from UBERON:0000995 {source="ISBN10:0073040584"} ! uterus
relationship: develops_from UBERON:0003124 {source="Wikipedia"} ! chorion
relationship: develops_from UBERON:0004340 {source="ISBN10:0073040584"} ! allantois
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0001988
name: feces
def: "Excretion in semisolid state processed by the intestine.[FMA]" [FMA:FMA, Wikipedia:Feces]
subset: uberon_slim
synonym: "excrement" RELATED [BTO:0000440]
synonym: "faeces" EXACT []
synonym: "fecal matter" EXACT []
synonym: "stool" EXACT []
xref: BTO:0000440
xref: ENVO:00002003
xref: FMA:64183
xref: GAID:1199
xref: galen:Feces
xref: MA:0002509
xref: MAT:0000053
xref: MESH:A.12.459
xref: MIAA:0000053
xref: ncithesaurus:Feces
xref: OpenCyc:Mx4rvVjJMZwpEbGdrcN5Y29ycA
is_a: UBERON:0000174 ! excreta
[Term]
id: UBERON:0001989
name: superior cervical ganglion
def: "Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain." [Wikipedia:Superior_cervical_ganglion, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "ganglion cervicale superius" RELATED LATIN [Wikipedia:Superior_cervical_ganglion]
synonym: "ganglion cervicale superius" RELATED [BTO:0001325]
synonym: "superior cervical sympathetic ganglion" EXACT []
synonym: "superior sympathetic cervical ganglion" RELATED []
xref: BTO:0001325
xref: EFO:0001945
xref: EHDAA:8943
xref: EMAPA:18441
xref: FMA:6467
xref: GAID:712
xref: http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png
xref: MA:0001156
xref: MESH:A.08.340.315.350.850
xref: ncithesaurus:Superior_Cervical_Ganglion
xref: RETIRED_EHDAA2:0001946
xref: SCTID:279278002
xref: TAO:0001572
xref: ZFA:0001572
is_a: UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0001990
name: middle cervical ganglion
def: "The middle cervical ganglion is the smallest of the three cervical ganglia, and is occasionally absent. It is placed opposite the sixth cervical vertebra, usually in front of, or close to, the inferior thyroid artery. It is probably formed by the coalescence of two ganglia corresponding to the fifth and sixth cervical nerves. It sends gray rami communicantes to the fifth and sixth cervical nerves, and gives off the middle cardiac nerve. [WP,unvetted]." [Wikipedia:Middle_cervical_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ganglion cervicale medium" RELATED LATIN [Wikipedia:Middle_cervical_ganglion]
synonym: "ganglion cervicale medium" RELATED [BTO:0000359]
synonym: "middle cervical sympathetic ganglion" EXACT []
xref: BTO:0000359
xref: EHDAA:8941
xref: EMAPA:18440
xref: FMA:6468
xref: http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png
xref: MA:0001155
xref: ncithesaurus:Middle_Cervical_Ganglion
xref: RETIRED_EHDAA2:0001180
xref: SCTID:279279005
is_a: UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0001991
name: cervical ganglion
def: "The cervical ganglia are paravertebral ganglia of the sympathetic nervous system. They consist of three paravertebral ganglia: superior cervical ganglion middle cervical ganglion inferior cervical ganglion. The inferior ganglion may be fused with the first thoracic ganglion to form a single structure, the stellate ganglion. Nerves emerging from cervical sympathetic ganglia contribute to the cardiac plexus, among other things. [WP,unvetted]." [Wikipedia:Cervical_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cervical sympathetic ganglion" EXACT []
xref: BTO:0000113
xref: EMAPA:18438
xref: FMA:6470
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png
xref: MA:0001153
xref: SCTID:181100007
is_a: UBERON:0001807 ! paravertebral ganglion
[Term]
id: UBERON:0001992
name: papillary layer of dermis
def: "Dense irregular connective tissue of the skin that consists of fibroblasts, various connective tissue cell types, and collagen, predominantly type III.[FMA]" [FMA:FMA, Wikipedia:Papillary_dermis]
comment: AO notes: check AO
subset: uberon_slim
synonym: "corpus papillary" EXACT [MP:0009545]
synonym: "dermis papillary layer" EXACT [MA:0000800]
synonym: "dermis papillary layer" EXACT []
synonym: "papillary dermis" EXACT []
synonym: "papillary layer" EXACT [MP:0009545]
synonym: "papillary layer of dermis" EXACT [FMA:64776]
synonym: "stratum papillare" EXACT [MP:0009545]
synonym: "stratum papillare" RELATED LATIN [Wikipedia:Papillary_dermis]
synonym: "stratum papillare corii" EXACT [MP:0009545]
synonym: "superficial dermis" EXACT [MA:0000802]
synonym: "superficial dermis" EXACT [MP:0009545]
xref: FMA:64776
xref: http://upload.wikimedia.org/wikipedia/commons/b/b4/Normal_Epidermis_and_Dermis_with_Intradermal_Nevus_10x.JPG
xref: MA:0000800
xref: MA:0000802
xref: ncithesaurus:Papillary_Dermis
xref: ncithesaurus:Stratum_Papillare
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0001993
name: reticular layer of dermis
def: "lower layer of the dermis, found under the papillary dermis, composed of dense irregular connective tissue featuring densely packed collagen fibers. It is the primary location of dermal elastic fibers." [Wikipedia:Reticular_dermis]
subset: uberon_slim
synonym: "dermis reticular layer" EXACT []
synonym: "reticular dermis" EXACT []
synonym: "stratum reticulare" EXACT [Wikipedia:Reticular_dermis]
synonym: "stratum reticulare" RELATED LATIN [Wikipedia:Reticular_dermis]
xref: FMA:64778
xref: MA:0000801
xref: ncithesaurus:Reticular_Dermis
xref: ncithesaurus:Stratum_Reticulare
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: adjacent_to UBERON:0001992 ! papillary layer of dermis
relationship: part_of UBERON:0002067 ! dermis
relationship: part_of UBERON:0008877 {source="FMA"} ! epidermal-dermal junction
[Term]
id: UBERON:0001994
name: hyaline cartilage
def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel with a perichondrium." [Wikipedia:Hyaline_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hyaline cartilage tissue" EXACT []
xref: FMA:64783
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray292.png/200px-Gray292.png
xref: MA:0000109
xref: ncithesaurus:Hyaline_Cartilage
xref: SCTID:39298000
xref: VSAO:0000094
xref: XAO:0004029
property_value: UBPROP:0000001 "Cartilage tissue primarily composed of type II collagen (thin fibrils) and a glassy appearance.[VSAO]" xsd:string
is_a: UBERON:0002418 ! cartilage tissue
[Term]
id: UBERON:0001995
name: fibrocartilage
def: "Cartilage tissue intermediate between hyaline cartilage and dense connective tissue; contains of abundant collagen fibers; chondrocytes often arranged in columns[VSAO]. A mixture of white fibrous tissue and cartilaginous tissue in various proportions. It owes its flexibility and toughness to the former of these constituents, and its elasticity to the latter. It is the only type of cartilage that contains type I collagen in addition to the normal type II[WP]. Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel without a well-defined perichondrium[FMA]." [FMA:64784, VSAO:0000103, Wikipedia:Fibrocartilage]
comment: The white fibrocartilages admit of arrangement into four groups—interarticular, connecting, circumferential, and stratiform -- WP. TODO: add mineralized
subset: uberon_slim
xref: FMA:64784
xref: galen:Fibrocartilage
xref: http://upload.wikimedia.org/wikipedia/commons/2/2e/Gray295.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Gray295.png/200px-Gray295.png
xref: MA:0000108
xref: ncithesaurus:Fibrocartilage
xref: SCTID:91685003
xref: VSAO:0000103
xref: XAO:0004028
property_value: UBPROP:0000001 "Cartilage tissue intermediate between hyaline cartilage and dense connective tissue; contains of abundant collagen fibers; chondrocytes often arranged in columns.[VSAO]" xsd:string
is_a: UBERON:0002418 ! cartilage tissue
[Term]
id: UBERON:0001996
name: elastic cartilage tissue
def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which consists of elastic fibers." [FMA:64785, Wikipedia:Elastic_cartilage]
subset: uberon_slim
synonym: "elastic cartilage" EXACT [MA:0000107]
synonym: "elastic cartilage tissue" EXACT [VSAO:0000091]
synonym: "yellow elastic cartilage" EXACT [Wikipedia:Elastic_cartilage]
synonym: "yellow elastic cartilage tissue" EXACT []
xref: FMA:64785
xref: http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray904.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ca/Gray904.png/200px-Gray904.png
xref: MA:0000107
xref: ncithesaurus:Elastic_Cartilage
xref: VSAO:0000091
xref: XAO:0004197
property_value: UBPROP:0000001 "Cartilage tissue that is flexible and contains abundant elastic fibers.[VSAO]" xsd:string
is_a: UBERON:0011589 {source="VSAO"} ! non-mineralized cartilage tissue
relationship: develops_from UBERON:0005863 {source="VSAO"} ! cartilaginous condensation
[Term]
id: UBERON:0001997
name: olfactory epithelium
alt_id: UBERON:0004853
def: "Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located." [Wikipedia:Olfactory_epithelium, ZFIN:curator]
comment: Genes: V1Rs, Trpc2 present in lamprey // See also: FMA:77199
subset: uberon_slim
subset: vertebrate_core
synonym: "nasal cavity olfactory epithelium" EXACT [MA:0001325]
synonym: "nasal epithelium" RELATED []
synonym: "nasal sensory epithelium" RELATED []
synonym: "olfactory membrane" EXACT [NIF_GrossAnatomy:birnlex_2703]
synonym: "olfactory mucosa" RELATED [GAID:303]
synonym: "olfactory sensory epithelium" EXACT []
synonym: "sensory olfactory epithelium" EXACT []
xref: AAO:0010158
xref: BTO:0000108
xref: EFO:0001972
xref: EHDAA2:0001228
xref: EHDAA:4774
xref: EMAPA:17606
xref: FMA:64803
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray857.png/200px-Gray857.png
xref: MA:0001325
xref: MAT:0000445
xref: ncithesaurus:Olfactory_Epithelium
xref: NIF_GrossAnatomy:birnlex_2703
xref: SCTID:37623003
xref: TAO:0000554
xref: VHOG:0000985
xref: ZFA:0000554
property_value: UBPROP:0000001 "Sensory lining of the medial wall, roof and anterior aspects of the main olfactory cavity (cavum principale).[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of principal cavity (AAO:0000992)[AAO]" xsd:string
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003350 ! epithelium of mucosa
is_a: UBERON:0005384 ! nasal cavity epithelium
is_a: UBERON:0006934 ! sensory epithelium
relationship: develops_from UBERON:0003050 ! olfactory placode
relationship: part_of UBERON:0000010 ! peripheral nervous system
relationship: part_of UBERON:0001826 {source="FMA"} ! nasal cavity mucosa
[Term]
id: UBERON:0001998
name: sternocostal joint
def: "arthrodial joints, with the exception of the first, in which the cartilage is directly united with the sternum, and which is, therefore, a synarthrodial articulation." [Wikipedia:Sternocostal_joints]
comment: AO notes - FMA has FMA:72323 'Costosternal joint', isa Synchondrosis, no other relationships
synonym: "articulatio sternocostalis" EXACT [FMA:7954]
synonym: "articulationes sternocostales" RELATED LATIN [Wikipedia:Sternocostal_joints]
synonym: "sternochondral joint" EXACT [FMA:7954]
synonym: "sternocostal synovial joint" EXACT [FMA:7954]
synonym: "synovial sternocostal joint" EXACT [FMA:7954]
xref: FMA:7954
xref: GAID:271
xref: http://upload.wikimedia.org/wikipedia/commons/c/cc/Gray315.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cc/Gray315.png/200px-Gray315.png
xref: MA:0001512
xref: MESH:A.02.835.583.790
xref: ncithesaurus:Sternocostal_Joint
xref: SCTID:361860002
is_a: UBERON:0002001 {source="MA"} ! joint of rib
is_a: UBERON:0002217 {source="FMA"} ! synovial joint
relationship: connects UBERON:0000975 ! sternum
[Term]
id: UBERON:0001999
name: iliopsoas
def: "Anatomical cluster consisting of iliacus, psoas major, psoas minor[WP]." [Wikipedia:Iliopsoas]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hyrtl's muscle" EXACT []
synonym: "iliopsoas muscle" EXACT [BTO:0000621]
synonym: "musculus iliopsoas" RELATED LATIN [Wikipedia:Iliopsoas]
xref: BTO:0000621
xref: EHDAA2:0000812
xref: EHDAA:9458
xref: EMAPA:18520
xref: FMA:64918
xref: http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG
xref: MA:0002321
xref: ncithesaurus:Iliopsoas_Muscle
xref: SCTID:181668001
xref: VHOG:0001005
is_a: UBERON:0000477 ! anatomical cluster
relationship: has_muscle_antagonist UBERON:0001370 {source="dbpedia"} ! gluteus maximus
relationship: has_muscle_antagonist UBERON:0008538 {source="dbpedia"} ! muscle of posterior compartment of thigh
relationship: has_muscle_insertion UBERON:0002504 {source="dbpedia", notes="lesser trochanter of femur"} ! lesser trochanter
relationship: has_muscle_nerve UBERON:0001267 {source="dbpedia"} ! femoral nerve
relationship: has_muscle_nerve UBERON:0009624 {source="dbpedia"} ! lumbar nerve
relationship: has_muscle_origin UBERON:0001130 {source="dbpedia"} ! vertebral column
[Term]
id: UBERON:0002000
name: gluteal muscle
def: "The gluteal muscles are the three muscles that make up the buttocks: the gluteus maximus muscle, gluteus medius muscle and gluteus minimus muscle." [Wikipedia:Gluteal_muscles]
comment: AO notes: FMA includes tensor fasciae latae and other buttock muscles. BTO def: Any one of three large skeletal muscles that form the buttock and move the thigh.
subset: uberon_slim
synonym: "gluteus" RELATED [BTO:0000531]
synonym: "gluteus muscle" RELATED []
xref: BTO:0000531
xref: EHDAA2:0000715
xref: FMA:64922
xref: MA:0000535
xref: ncithesaurus:Gluteal_Muscle
xref: VHOG:0001316
is_a: UBERON:0001497 {source="FMA"} ! muscle of pelvic girdle
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
[Term]
id: UBERON:0002001
name: joint of rib
def: "Any joint that connects a rib to another structure (or another rib). Examples: costochondral, costovertebral, interchondral, sternocostal joints." [UBERON:cjm]
synonym: "rib joint" EXACT []
xref: FMA_RETIRED:64994
xref: MA:0001508
xref: ncithesaurus:Joint_of_the_Rib
xref: SCTID:263314001
is_a: UBERON:0000982 ! skeletal joint
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: connects UBERON:0002228
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0002228 ! rib
relationship: connects UBERON:0002228 ! rib
relationship: part_of UBERON:0003252 ! rib cage
[Term]
id: UBERON:0002002
name: interchondral joint
def: "Interchondral Articulations (articulations of the cartilages of the ribs with each other). The contiguous borders of the sixth, seventh, and eighth, and sometimes those of the ninth and tenth, costal cartilages articulate with each other by small, smooth, oblong facets. Each articulation is enclosed in a thin articular capsule, lined by synovial membrane and strengthened laterally and medially by ligamentous fibers which pass from one cartilage to the other. Sometimes the fifth costal cartilages, more rarely the ninth and tenth, articulate by their lower borders with the adjoining cartilages by small oval facets; more frequently the connection is by a few ligamentous fibers." [Wikipedia:Interchondral_articulations]
comment: Editor notes: Consider creating logical definition after obo2owl cardinality tests. AO notes: FMA has both synovial and syndesmosis subtypes - consider adding separate class for FMA:7955 Synovial interchondral joint
synonym: "articulatio interchondralis" EXACT [FMA:7955]
synonym: "articulationes interchondrales" EXACT [FMA:71378, FMA:TA]
synonym: "interchondral articulation" EXACT [Wikipedia:Interchondral_articulations]
synonym: "interchondral joints" EXACT [FMA:71378]
synonym: "interchondral joints set" EXACT [FMA:71378]
synonym: "synovial interchondral joint" EXACT [FMA:7955]
xref: FMA:10425
xref: http://upload.wikimedia.org/wikipedia/commons/c/cc/Gray315.png
xref: MA:0001511
xref: SCTID:303101003
is_a: UBERON:0002001 {source="MA"} ! joint of rib
is_a: UBERON:0002210 {source="FMA"} ! syndesmosis
relationship: connects UBERON:0002228 {notes="connects two adjacent ribs"} ! rib
relationship: connects UBERON:0002228 {cardinality="2"} ! rib
[Term]
id: UBERON:0002003
name: peripheral nerve
alt_id: UBERON:0003377
def: "Neural tree (organ) which is directly continuous with the neuraxis. Examples: phrenic nerve, radial nerve, ilioinguinal nerve, sciatic nerve[FMA]. The peripheral nerves include the 12 cranial nerves, the spinal nerves and roots, and what are called the autonomic nerves that are concerned specifically with the regulation of the heart muscle, the muscles in blood vessel walls, and glands[BTO]. The nerves outside of the brain and spinal cord, including the autonomic, cranial, and spinal nerves. Peripheral nerves contain non-neuronal cells and connective tissue as well as axons. The connective tissue layers include, from the outside to the inside, the epineurium, the perineurium, and the endoneurium[GAID]. A peripheral nerve, or simply nerve is an enclosed, cable-like bundle of peripheral axons (the long, slender projections of neurons). A nerve provides a common pathway for the electrochemical nerve impulses that are transmitted along each of the axons. Nerves are found only in the peripheral nervous system. In the central nervous system, the analogous structures are known as tracts[WP]." [Wikipedia:Peripheral_nerve]
comment: TODO - check definition vs nerve. See notes for cranial nerve II (optic nerve)
subset: major_organ
subset: uberon_slim
synonym: "nerve part of peripheral nervous system" EXACT [NIF_GrossAnatomy:birnlex_1615]
synonym: "peripheral nerve tree" EXACT []
xref: BTO:0001027
xref: EMAPA:25148
xref: EV:0100371
xref: FMA:65239
xref: GAID:747
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png
xref: MA:0000228
xref: MESH:A.08.800.800
xref: ncithesaurus:Peripheral_Nerve
xref: NIF_GrossAnatomy:birnlex_1615
xref: SCTID:244457007
xref: VHOG:0000901
xref: XAO:0000204
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0002004
name: trunk of sciatic nerve
comment: This class was created automatically from a combination of ontologies
synonym: "sciatic nerve trunk" EXACT []
synonym: "sciatic neural trunk" EXACT []
xref: FMA:65507
xref: MA:0001178
is_a: UBERON:0001147 ! trunk of peripheral nerve
[Term]
id: UBERON:0002005
name: enteric nervous system
def: "The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation[GO]." [Wikipedia:Enteric_nervous_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "PNS - enteric" EXACT []
xref: BTO:0002506
xref: EFO:0000895
xref: EHDAA2:0004202
xref: EMAPA:26922
xref: FMA:66070
xref: GAID:799
xref: MA:0000222
xref: MAT:0000102
xref: MESH:A.08.800.050.150
xref: MIAA:0000102
xref: NIF_GrossAnatomy:birnlex_1166
xref: TAO:0001155
xref: ZFA:0001155
is_a: UBERON:0002410 ! autonomic nervous system
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0005428 {source="UBERONREF:0000002", source="ZFA", source="Wikipedia"} ! vagal neural crest
relationship: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0002006
name: cortex of lymph node
def: "Peripheral portion of the lymph node, underneath the capsule[WP]." [Wikipedia:Cortex_of_lymph_node]
subset: uberon_slim
synonym: "cortex nodi lymphoidei" RELATED LATIN [Wikipedia:Cortex_of_lymph_node]
synonym: "lymph node cortex" EXACT []
xref: FMA:66253
xref: http://upload.wikimedia.org/wikipedia/commons/b/b8/Illu_lymph_node_structure.png
xref: MA:0000740
xref: ncithesaurus:Lymph_Node_Cortex
is_a: UBERON:0001851 ! cortex
relationship: part_of UBERON:0000029
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002007
name: medulla of lymph node
def: "." [Wikipedia:Bone_marrow_of_ovary_of_lymph_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lymph node medulla" EXACT []
synonym: "medulla nodi lymphoidei" RELATED LATIN [Wikipedia:Medulla_of_lymph_node]
xref: FMA:66254
xref: MA:0000745
is_a: UBERON:0000958 ! medulla
relationship: part_of UBERON:0000029
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002008
name: cardiac nerve plexus
def: "a plexus of nerves situated at the base of the heart that innervate the heart." [Wikipedia:Cardiac_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "autonomic nerve plexus of heart" EXACT [OBOL:automatic]
synonym: "autonomic plexus of heart" EXACT [OBOL:automatic]
synonym: "cardiac plexus" EXACT []
synonym: "heart autonomic nerve plexus" EXACT [OBOL:automatic]
synonym: "heart autonomic plexus" EXACT [OBOL:automatic]
synonym: "heart visceral nerve plexus" EXACT [OBOL:automatic]
synonym: "heart visceral plexus" EXACT [OBOL:automatic]
synonym: "plexus cardiacus" EXACT [FMA:6628, FMA:TA]
synonym: "plexus cardiacus" RELATED LATIN [Wikipedia:Cardiac_plexus]
synonym: "visceral nerve plexus of heart" EXACT [OBOL:automatic]
synonym: "visceral plexus of heart" EXACT [OBOL:automatic]
xref: FMA:6628
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png
xref: MA:0001138
xref: ncithesaurus:Cardiac_Nerve_Plexus
xref: SCTID:280511002
is_a: UBERON:0001816 ! autonomic nerve plexus
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948
intersection_of: UBERON:0001816 ! autonomic nerve plexus
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002009
name: pulmonary nerve plexus
def: "The pulmonary plexus is an autonomic plexus formed from pulmonary branches of vagus nerve and the sympathetic trunk. It supplies the Bronchial tree. [WP,unvetted]." [Wikipedia:Pulmonary_plexus]
subset: uberon_slim
synonym: "plexus pulmonalis" EXACT [FMA:6629, FMA:TA]
synonym: "plexus pulmonalis" RELATED LATIN [Wikipedia:Pulmonary_plexus]
synonym: "pulmonary plexus" EXACT [FMA:6629]
xref: FMA:6629
xref: MA:0001143
xref: SCTID:280512009
is_a: UBERON:0001816 {source="MA"} ! autonomic nerve plexus
relationship: part_of UBERON:0003728 {source="FMA"} ! mediastinum
[Term]
id: UBERON:0002010
name: celiac nerve plexus
def: "The celiac plexus, also known as the solar plexus, is a complex network of nerves located in the abdomen. The celiac plexus is located near where the celiac trunk, superior mesenteric artery, and renal arteries branch from the abdominal aorta. It is behind the stomach and the omental bursa and in front of the crura of the diaphragm, on the level of the first lumbar vertebra, L1. The plexus is formed (in part) by the greater and lesser splanchnic nerves of both sides, and also parts of the right vagus nerve. The celiac plexus proper consists of the celiac ganglia with a network of interconnecting fibers. The aorticorenal ganglia are often considered to be part of the celiac ganglia, and thus, part of the plexus. [WP,unvetted]." [Wikipedia:Celiac_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "celiac plexus" EXACT []
synonym: "coeliac nerve plexus" RELATED []
synonym: "coeliac plexus" EXACT []
synonym: "plexus coeliacus" EXACT [FMA:6630, FMA:TA]
synonym: "plexus coeliacus" RELATED LATIN [Wikipedia:Celiac_plexus]
synonym: "plexus nervosus coeliacus" EXACT [FMA:6630, FMA:TA]
xref: FMA:6630
xref: GAID:796
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png
xref: MA:0001139
xref: MESH:A.08.800.050.050.150
xref: SCTID:362494009
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0002011
name: thoracodorsal artery
def: "The thoracodorsal artery is a branch of the subscapular artery. It travels inferiorly with the thoracodorsal nerve and supplies the latissimus dorsi. [WP,unvetted]." [Wikipedia:Thoracodorsal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria thoracodorsalis" RELATED LATIN [Wikipedia:Thoracodorsal_artery]
xref: FMA:66320
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/Latissimus_dorsi.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Latissimus_dorsi.png/200px-Latissimus_dorsi.png
xref: MA:0002065
xref: ncithesaurus:Thoracodorsal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002012
name: pulmonary artery
def: "The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]." [Wikipedia:Pulmonary_artery]
subset: uberon_slim
synonym: "pulmonary arterial tree" EXACT []
synonym: "pulmonary arterial tree organ part" EXACT []
synonym: "truncus pulmonalis, arteria pulmonalis" RELATED LATIN [Wikipedia:Pulmonary_artery]
xref: AAO:0010221
xref: BTO:0000778
xref: EFO:0001399
xref: EHDAA2:0001575
xref: EHDAA:4351
xref: EMAPA:17008
xref: FMA:66326
xref: GAID:505
xref: galen:PulmonaryArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0002031
xref: MESH:A.07.231.114.715
xref: ncithesaurus:Pulmonary_Artery
xref: OpenCyc:Mx4rvVjbIpwpEbGdrcN5Y29ycA
xref: SCTID:181380003
xref: VHOG:0000982
xref: XAO:0004162
property_value: UBPROP:0000001 "Major artery which supplies blood to the lungs.[AAO]" xsd:string
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001637 ! artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0008886
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0008886 ! pulmonary vascular system
relationship: develops_from UBERON:0002061 {source="Wikipedia"} ! truncus arteriosus
relationship: part_of UBERON:0008886 ! pulmonary vascular system
[Term]
id: UBERON:0002013
name: superior hypogastric nerve plexus
def: "The superior hypogastric plexus (in older texts, hypogastric plexus or presacral nerve) is a plexus of nerves situated on the vertebral bodies below the bifurcation of the aorta. [WP,unvetted]." [Wikipedia:Superior_hypogastric_plexus]
comment: Check relationship with generic hypogastric nerve/plexus
subset: uberon_slim
synonym: "hypogastric plexus" RELATED []
synonym: "nervus presacralis" EXACT [FMA:6642, FMA:TA]
synonym: "plexus hypogastricus inferior" RELATED LATIN [Wikipedia:Superior_hypogastric_plexus]
synonym: "plexus hypogastricus superior" EXACT [FMA:6642, FMA:TA]
synonym: "presacral nerve" EXACT []
synonym: "superior hypogastric plexus" EXACT []
xref: EMAPA:19274
xref: FMA:6642
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png
xref: MA:0001142
xref: SCTID:244484008
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: adjacent_to UBERON:0001075 ! body of vertebra
relationship: overlaps UBERON:0005303 ! hypogastric nerve
[Term]
id: UBERON:0002014
name: inferior hypogastric nerve plexus
def: "The inferior hypogastric plexus (pelvic plexus in some texts) is a plexus of nerves that supplies the viscera of the pelvic cavity. The inferior hypogastric plexus is a paired structure, with each situated on the side of the rectum in the male, and at the sides of the rectum and vagina in the female. [WP,unvetted]." [Wikipedia:Inferior_hypogastric_plexus]
comment: Check relationship with generic hypogastric nerve/plexus
subset: uberon_slim
synonym: "inferior hypogastric plexus" EXACT []
synonym: "pelvic nerve plexus" EXACT []
synonym: "pelvic plexus" EXACT []
synonym: "plexus hypogastricus inferior" EXACT [FMA:6643, FMA:TA]
synonym: "plexus hypogastricus inferior" RELATED LATIN [Wikipedia:Inferior_hypogastric_plexus]
synonym: "plexus nervosus pelvicus" EXACT [FMA:6643, FMA:TA]
synonym: "plexus pelvicus" EXACT [FMA:6643, FMA:TA]
xref: EMAPA:19275
xref: FMA:6643
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png
xref: MA:0001141
xref: ncithesaurus:Inferior_Hypogastric_Nerve_Plexus
xref: SCTID:192608000
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: overlaps UBERON:0005303 ! hypogastric nerve
[Term]
id: UBERON:0002015
name: kidney capsule
def: "The renal capsule is a tough fibrous layer surrounding the kidney and covered in a thick layer of ' adipose tissue. It provides some protection from trauma and damage. The renal capsule relates to the other layers in the following order (moving from innermost to outermost): renal medulla renal cortex renal capsule perinephric fat (or 'perirenal fat') renal fascia paranephric fat (or 'pararenal fat') peritoneum (anteriorly), and transversalis fascia (posteriorly). [WP,unvetted]." [Wikipedia:Kidney_capsule]
subset: uberon_slim
synonym: "capsule of kidney" EXACT []
synonym: "fibrous capsule of kidney" EXACT [FMA:66610]
synonym: "renal capsule" EXACT [GO:0072127]
xref: EMAPA:18679
xref: FMA:66610
xref: galen:CapsuleOfKidney
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg
xref: MA:0000370
xref: ncithesaurus:Renal_Capsule
xref: SCTID:243657006
is_a: UBERON:0003567 ! abdomen connective tissue
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0002016
name: pulmonary vein
def: "Pulmonary veins are blood vessels that transport blood from the lungs to the heart[GO]." [Wikipedia:Pulmonary_vein]
subset: uberon_slim
synonym: "pulmonary venous tree organ part" EXACT []
synonym: "venae pulmonales" RELATED LATIN [Wikipedia:Pulmonary_vein]
xref: AAO:0010521
xref: BTO:0001799
xref: EHDAA2:0001579
xref: EHDAA:2629
xref: EMAPA:18645
xref: FMA:66643
xref: GAID:543
xref: galen:PulmonaryVein
xref: http://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0002206
xref: MESH:A.07.231.908.713
xref: ncithesaurus:Pulmonary_Vein
xref: SCTID:430160002
xref: VHOG:0001133
xref: XAO:0000394
property_value: UBPROP:0000001 "Any of the veins which collect blood from the lungs and some small vesicles received from the esophagus.[AAO]" xsd:string
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001638 ! vein
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0008886
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0008886 ! pulmonary vascular system
relationship: develops_from UBERON:0002061 ! truncus arteriosus
relationship: part_of UBERON:0008886 ! pulmonary vascular system
[Term]
id: UBERON:0002017
name: portal vein
def: "A vein that conducts blood from the digestive organs, spleen, pancreas, and gallbladder to the liver[BTO]." [BTO:0001792]
subset: uberon_slim
synonym: "portal venous tree organ part" EXACT [FMA:66645]
xref: BTO:0001792
xref: EHDAA2:0001485
xref: EHDAA:6510
xref: EMAPA:17349
xref: FMA:66645
xref: GAID:540
xref: galen:PortalVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png
xref: MA:0002198
xref: MESH:A.07.231.908.670.567
xref: ncithesaurus:Portal_Vein
xref: OpenCyc:Mx4rv_bem5wpEbGdrcN5Y29ycA
xref: SCTID:362064007
xref: VHOG:0000656
xref: XAO:0000392
is_a: UBERON:0001638 {source="FMA"} ! vein
relationship: part_of UBERON:0005806 ! portal system
[Term]
id: UBERON:0002018
name: synovial membrane of synovial joint
def: "Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [Wikipedia:Synovial_membrane]
subset: uberon_slim
synonym: "membrana synovialis capsulae articularis" EXACT LATIN [Wikipedia:Synovial_membrane]
synonym: "stratum synoviale" EXACT [FMA:66762, FMA:TA]
synonym: "synovial layer" BROAD [FMA:66762]
synonym: "synovial membrane" BROAD [AEO:0000181]
synonym: "synovium" BROAD [BTO:0001823, VHOG:0001282]
xref: AEO:0000181
xref: BTO:0001823
xref: EFO:0001393
xref: EHDAA2_RETIRED:0003181
xref: EV:0100143
xref: FMA:9865
xref: GAID:264
xref: galen:SynovialMembrane
xref: http://upload.wikimedia.org/wikipedia/commons/1/19/Joint.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Synovium.png/200px-Synovium.png
xref: MA:0000114
xref: MESH:A.02.835.583.443.800
xref: ncithesaurus:Synovial_Membrane
xref: SCTID:361828005
xref: VHOG:0001282
is_a: UBERON:0006915 ! stratified squamous epithelium
is_a: UBERON:0007616 {source="FMA"} ! layer of synovial tissue
relationship: attaches_to UBERON:0001484 {source="GAID"} ! articular capsule
relationship: part_of UBERON:0002217 {source="EHDAA2"} ! synovial joint
[Term]
id: UBERON:0002019
name: accessory XI nerve
def: "a nerve that controls specific muscles of the shoulder and neck." [Wikipedia:Spinal_accessory_nerve]
comment: Taxon notes: In mice, the spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve[GO]
subset: uberon_slim
synonym: "accessory nerve" EXACT []
synonym: "accessory nerve [XI]" EXACT []
synonym: "accessory XI" EXACT [EHDAA2:0000106]
synonym: "accessory XI nerve" EXACT []
synonym: "cervical accessory nerve" EXACT []
synonym: "cranial nerve XI" EXACT [NIF_GrossAnatomy:birnlex_812]
synonym: "eleventh cranial nerve" EXACT [NIF_GrossAnatomy:birnlex_812]
synonym: "nervus accessorius [xi]" EXACT [FMA:6720, FMA:TA]
synonym: "pars spinalis nervus accessorius" EXACT [FMA:6720, FMA:TA]
synonym: "spinal accessory nerve" EXACT [FMA:6720]
synonym: "spinal accessory nerve tree" EXACT []
synonym: "spinal part of accessory nerve" EXACT []
synonym: "Willis' nerve" EXACT []
xref: AAO:0010476
xref: EHDAA2:0000106
xref: EHDAA:2855
xref: EMAPA:17159
xref: EMAPA:17265
xref: FMA:6720
xref: GAID:825
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png
xref: MA:0001088
xref: MESH:A.08.800.800.120.060
xref: ncithesaurus:Accessory_Nerve
xref: NIF_GrossAnatomy:birnlex_812
xref: OpenCyc:Mx4rwTEwI5wpEbGdrcN5Y29ycA
xref: SCTID:362469008
xref: VHOG:0000699
xref: XAO:0004214
property_value: UBPROP:0000001 "Small motor nerve which innervates a single pectoral suspensory muscle, the m. cucullaris.[AAO]" xsd:string
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0002020
name: gray matter of neuraxis
def: "Heterogeneous cluster of neural somas in the brain and the spinal cord." [Wikipedia:Gray_matter]
subset: uberon_slim
subset: vertebrate_core
synonym: "gray mater" RELATED [ZFA:0001681]
synonym: "gray matter" EXACT []
synonym: "grey matter" EXACT []
synonym: "grey substance" EXACT []
synonym: "neuronal grey matter" EXACT [AEO:0001012]
synonym: "substantia grisea" EXACT [FMA:67242, FMA:TA]
xref: AEO:0001012
xref: EHDAA2:0003136
xref: EHDAA2_RETIRED:0004658
xref: FMA:67242
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png
xref: MA:0001112
xref: ncithesaurus:Gray_Matter
xref: OpenCyc:Mx4rwDdKMpwpEbGdrcN5Y29ycA
xref: TAO:0002197
xref: VHOG:0001768
xref: ZFA:0001681
property_value: UBPROP:0000001 "Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries.[TAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0002021
name: occipital lobe
def: "Occipital lobe is the one of five lobes of the cerebral hemisphere which occupies the posterior-most portion of the hemisphere. Anteriorly, it shares an arbitrary border with the parietal lobe and temporal lobe. Medially, it is bounded by the longitudinal cerebral fissure." [Wikipedia:Occipital_lobe]
subset: uberon_slim
synonym: "lobus occipitalis" RELATED LATIN [Wikipedia:Occipital_lobe]
synonym: "occipital cortex" EXACT []
synonym: "occipital neocortex" EXACT [DHB:Ocx]
synonym: "regio occipitalis" EXACT [FMA:67325, FMA:TA]
xref: BTO:0000293
xref: EFO:0000915
xref: EV:0100170
xref: FMA:67325
xref: GAID:678
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray727_occipital_lobe.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray727_occipital_lobe.png/200px-Gray727_occipital_lobe.png
xref: MA:0000913
xref: MAT:0000507
xref: MESH:A.08.186.211.730.885.213.571
xref: ncithesaurus:Occipital_Lobe
xref: NIF_GrossAnatomy:birnlex_1136
xref: OpenCyc:Mx4rv9OFy5wpEbGdrcN5Y29ycA
xref: SCTID:180923002
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: adjacent_to UBERON:0001871 ! temporal lobe
relationship: adjacent_to UBERON:0001872 ! parietal lobe
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0002022
name: insula
def: "The insula is the one of five lobes of the cerebral hemisphere. It lies in the depths of the lateral fissure and is covered by portions of the frontal, parietal and temporal lobes." [Wikipedia:Insular_cortex]
comment: AO notes: two classes in ncit, Central_Lobe is part of temporal lobe
subset: uberon_slim
synonym: "central lobe" EXACT [FMA:67329]
synonym: "cortex of island" EXACT [FMA:67329]
synonym: "insula lobule" EXACT [FMA:67329]
synonym: "insular cortex" EXACT [NIF_GrossAnatomy:birnlex_1117]
synonym: "insular cortex" EXACT [FMA:67329]
synonym: "insular lobe" EXACT [FMA:67329]
synonym: "insular region" EXACT [FMA:67329]
synonym: "insulary cortex" RELATED [BTO:0001105]
synonym: "island of Reil" EXACT [FMA:67329]
synonym: "lobus insularis" EXACT [FMA:67329, FMA:TA]
xref: BM:Tel-Cx-Ins
xref: BTO:0001105
xref: EV:0100172
xref: FMA:67329
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray731.png
xref: MA:0000909
xref: ncithesaurus:Central_Lobe
xref: ncithesaurus:Insula
xref: NIF_GrossAnatomy:birnlex_1117
xref: OpenCyc:Mx4rvpK5WZwpEbGdrcN5Y29ycA
xref: SCTID:279201009
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000956 {source="NIF", source="BTO"} ! cerebral cortex
relationship: part_of UBERON:0001869 {source="FMA"} ! cerebral hemisphere
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0002023
name: claustrum of brain
def: "one of the four basal ganglia in each cerebral hemisphere that consists of a thin lamina of gray matter between the lentiform nucleus and the insula[BTO]. The claustrum, which is suspected to be present in all mammals, is a fairly thin (fraction of 1 mm to multiple mms) vertical curved sheet of subcortical gray matter oriented sagittally between the white matter tracts of the external capsule and extreme capsule. The claustrum is lateral to the putamen and medial to the insular cortex and is considered by some sources to be part of the basal ganglia. There are lateral and medial tracts connecting to many cortices and perhaps to the hippocampus, the amygdala, and the caudate nucleus (connections with subcortical centers are a matter of debate)[WP]." [BTO:0004292, Wikipedia:Claustrum]
subset: uberon_slim
synonym: "claustrum" EXACT [MA:0000888]
synonym: "dorsal claustrum" EXACT [FMA:67440]
synonym: "dorsal portion of claustrum" EXACT [FMA:67440]
xref: ABA:CLA
xref: BM:Tel-Cl
xref: BTO:0004292
xref: EV:0100183
xref: FMA:67440
xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg
xref: MA:0000888
xref: ncithesaurus:Claustrum
xref: NIF_GrossAnatomy:birnlex_1522
xref: SCTID:279410004
property_value: "present_in_taxon" NCBITaxon:40674
property_value: "spatially_disjoint_from" UBERON:0002887
property_value: "spatially_disjoint_from" UBERON:0006107
is_a: UBERON:0002420 {source="FMA"} ! basal ganglion
disjoint_from: UBERON:0002729 ! claustral amygdaloid area
relationship: part_of UBERON:0000203 {source="ISBN10:0471888893"} ! pallium
relationship: part_of UBERON:0001869 {source="ISBN10:0471888893"} ! cerebral hemisphere
relationship: part_of UBERON:0006098 {source="NIF"} ! basal nuclear complex
[Term]
id: UBERON:0002024
name: internal carotid nerve plexus
def: "The internal carotid plexus (carotid plexus) is situated on the lateral side of the internal carotid artery, and in the plexus there occasionally exists a small gangliform swelling, the carotid ganglion, on the under surface of the artery. Postganglionic sympathetic fibres ascend from the superior cervical ganglion, along the walls of the internal carotid artery, to enter the internal carotid plexus. These fibres then distribute to deep structures, which include the levator palpebrae superioris and pupillary dilator muscles. Some of the fibres from the internal carotid plexus converge to form the deep petrosal nerve. The internal carotid plexus communicates with the semilunar ganglion, the abducent nerve, and the sphenopalatine ganglion; it distributes filaments to the wall of the carotid artery, and also communicates with the tympanic branch of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Internal_carotid_nerve_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "internal carotid plexus" EXACT []
synonym: "plexus caroticus internus" EXACT [FMA:67533, FMA:TA]
xref: FMA:67533
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray840.png/200px-Gray840.png
xref: MA:0001162
xref: ncithesaurus:Internal_Carotid_Nerve_Plexus
xref: SCTID:280509006
is_a: UBERON:0001816 ! autonomic nerve plexus
[Term]
id: UBERON:0002025
name: stratum basale of epidermis
def: "Deepest layer of the layers of the epidermis[WP]." [Wikipedia:Stratum_germinativum]
comment: consisting of non-keratinized, viable cells, in contrast to the outer (upper) layer of epidermis made up of keratinized, anucleated, non-viable cells
subset: uberon_slim
synonym: "basal cell layer of epidermis" EXACT [FMA:67540]
synonym: "epidermis basal layer" RELATED []
synonym: "epidermis stratum basale" EXACT []
synonym: "epidermis stratum germinativum" RELATED []
synonym: "Malpighian layer" RELATED [BTO:0000438]
synonym: "rete Malphighii" EXACT []
synonym: "stratum basalis of epidermis" EXACT []
synonym: "stratum germinativum" EXACT []
synonym: "stratum Malphighi" EXACT []
xref: AAO:0010598
xref: BTO:0000438
xref: FMA:67540
xref: MA:0000803
xref: ncithesaurus:Rete_Malpighii
xref: ncithesaurus:Stratum_Basale
xref: SCTID:419481005
xref: TAO:0001180
xref: XAO:0000041
xref: ZFA:0001180
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002026
name: stratum spinosum of epidermis
def: "a layer of the epidermis found between the stratum granulosum and stratum basale. Has cells that produce and secrete bipolar lipids which prevent evaporation, helping to 'water-proof' the skin. Keratinization begins in the stratum spinosum." [Wikipedia:Stratum_spinosum]
synonym: "epidermis prickle cell layer" RELATED []
synonym: "epidermis stratum spinosum" EXACT []
synonym: "prickle cell layer" RELATED [BTO:0000435]
synonym: "prickle cell layer of epidermis" EXACT [FMA:67542]
synonym: "squamous cell layer of epidermis" EXACT []
synonym: "stratum malphighii" EXACT []
synonym: "stratum spinosum" EXACT []
xref: BTO:0000435
xref: FMA:67542
xref: MA:0000807
xref: ncithesaurus:Stratum_Spinosum
xref: SCTID:420086000
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: adjacent_to UBERON:0002025 ! stratum basale of epidermis
relationship: adjacent_to UBERON:0002069 ! stratum granulosum of epidermis
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002027
name: stratum corneum of epidermis
def: "outermost layer of the epidermis, composed of large, flat, polyhedral, plate-like envelopes filled with keratin, which is made up of dead cells that have migrated up from the stratum granulosum." [Wikipedia:Stratum_corneum]
comment: this skin layer is composed mainly of dead cells that lack nuclei. As these dead cells slough off on the surface in the thin air-filled stratum disjunctum, they are continuously replaced by new cells from the stratum germinativum (basale). In the human forearm, for example, about 1300 cells/cm2/hr are shed. This outer layer that is sloughed off is also known as the stratum dysjunctum. Cells of the stratum corneum contain keratin, a protein that helps keep the skin hydrated by preventing water evaporation. These cells can also absorb water, further aiding in hydration, and explaining why humans and other animals experience wrinkling of the skin on the fingers and toes ("pruning") when immersed in water for prolonged periods. In addition, this layer is responsible for the "spring back" or stretchy properties of skin. A weak glutenous protein bond pulls the skin back to its natural shape. The thickness of the stratum corneum varies according to the amount of protection and/or grip required by a region of the body. For example, the hands are typically used to grasp objects, requiring the palms to be covered with a thick stratum corneum. In a similar manner, the sole of the foot is prone to injury, and so it is protected with a thick stratum corneum layer. In general, the stratum corneum contains 15 to 20 layers of dead cells. The stratum corneum has a thickness between 10 and 40 μm. n reptiles, the stratum corneum is permanent, and is replaced only during times of rapid growth, in a process called ecdysis or moulting. The stratum corneum in reptiles contains beta-keratin, which provides a much more rigid skin layer.
synonym: "cornified layer" EXACT []
synonym: "epidermis stratum corneum" EXACT []
synonym: "horny layer" RELATED [BTO:0000344]
synonym: "horny layer of epidermis" EXACT [FMA:67545]
synonym: "stratum corneum" EXACT []
synonym: "stratum corneum epidermidis" RELATED LATIN [Wikipedia:Stratum_corneum]
xref: AAO:0010597
xref: BTO:0000344
xref: FMA:67545
xref: http://upload.wikimedia.org/wikipedia/commons/e/e4/Epidermal_layers.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Skinlayers.png/200px-Skinlayers.png
xref: MA:0000804
xref: ncithesaurus:Stratum_Corneum
xref: SCTID:361695002
property_value: UBPROP:0000001 "The keratinized outermost layer of the epidermis, which is periodically shed.[AAO]" xsd:string
is_a: UBERON:0003055 ! periderm
[Term]
id: UBERON:0002028
name: hindbrain
def: "The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA]." [Wikipedia:Rhombencephalon, ZFA:0000029, ZFIN:curator]
comment: in MA, brainstem and hindbrain and part-of siblings under brain, consistent with FMA and NIF. See also notes for cerebellum. We weaken the relation in ABA to overlaps
subset: uberon_slim
subset: vertebrate_core
synonym: "rhombencephalon" RELATED []
xref: AAO:0010150
xref: ABA:HB
xref: BTO:0000672
xref: EFO:0000923
xref: EHDAA2:0000746
xref: EHDAA:3514
xref: EHDAA:6487
xref: EMAPA:16916
xref: EMAPA:18632
xref: FMA:67687
xref: http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png
xref: MA:0000195
xref: MAT:0000107
xref: MESH:A.08.186.211.132.810
xref: MIAA:0000107
xref: ncithesaurus:Hind-Brain
xref: NIF_GrossAnatomy:birnlex_942
xref: TAO:0000029
xref: VHOG:0000070
xref: XAO:0000015
xref: ZFA:0000029
property_value: "spatially_disjoint_from" UBERON:0001891
property_value: "spatially_disjoint_from" UBERON:0001894
property_value: UBPROP:0000001 "Posterior part of the brain consisting of the cerebellum and medulla oblongata.[AAO]" xsd:string
property_value: UBPROP:0000001 "The most posterior of the three principal regions of the brain, forming the rhombencephalon and all or most of the metencephalon. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from hindbrain neural tube (TAO:0007043)[TAO]" xsd:string
is_a: UBERON:0004732 ! segmental subdivision of nervous system
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003076 {source="XAO"} ! posterior neural tube
relationship: develops_from UBERON:0007277 {evidence="definitional"} ! presumptive hindbrain
relationship: has_developmental_contribution_from UBERON:0003852 {evidence="definitional"} ! rhombencephalon neural crest
relationship: overlaps UBERON:0002298 {source="ABA", notes="modified-source-relation"} ! brainstem
relationship: part_of UBERON:0000955 {source="ZFA"} ! brain
[Term]
id: UBERON:0002029
name: epithelium of gall bladder
def: "the simple columnar epithelial lining of the gall bladder." [MP:0009492]
comment: This class was created automatically from a combination of ontologies
synonym: "biliary epithelium" RELATED []
synonym: "epithelial tissue of gall bladder" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gallbladder" EXACT [OBOL:automatic]
synonym: "epithelium of gallbladder" EXACT [OBOL:automatic]
synonym: "gall bladder epithelial tissue" EXACT [OBOL:automatic]
synonym: "gall bladder epithelium" EXACT []
synonym: "gallbladder epithelial tissue" EXACT [OBOL:automatic]
synonym: "gallbladder epithelium" EXACT [OBOL:automatic]
xref: BTO:0001449
xref: FMA:67711
xref: MA:0001632
xref: ncithesaurus:Gallbladder_Epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0002110
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002110 ! gallbladder
relationship: part_of UBERON:0002110 ! gallbladder
[Term]
id: UBERON:0002030
name: nipple
def: "Projection of skin containing the outlets for 15-20 lactiferous ducts arranged cylindrically around the tip." [FMA:67771, Wikipedia:Nipple]
comment: FMA makes this part of the breast, whereas in MA it is part of the mammary gland. We assert both these for now, but the MA assertion is probably too strong, and a different relationship type should be used.
subset: uberon_slim
synonym: "papilla mammae" EXACT [MP:0009723]
synonym: "papilla mammaria" RELATED LATIN [Wikipedia:Nipple]
synonym: "papilla of breast" EXACT []
synonym: "papillary part of breast" EXACT []
synonym: "teat" EXACT []
synonym: "thele" EXACT [MP:0009723]
synonym: "thelium" EXACT [MP:0009723]
xref: BTO:0000821
xref: FMA:67771
xref: GAID:35
xref: galen:Nipple
xref: http://upload.wikimedia.org/wikipedia/commons/5/59/Female_nipple_profile.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Female_nipple_profile.jpg/200px-Female_nipple_profile.jpg
xref: MA:0000796
xref: MESH:A.01.236.500
xref: ncithesaurus:Nipple
xref: OpenCyc:Mx4rvVjKi5wpEbGdrcN5Y29ycA
xref: SCTID:265780004
is_a: UBERON:0000475 ! organism subdivision
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0008425 {source="Stedmans"} ! mammary ridge
relationship: part_of UBERON:0000310 {source="FMA"} ! breast
relationship: part_of UBERON:0001911 {source="MA"} ! mammary gland
[Term]
id: UBERON:0002031
name: epithelium of bronchus
def: "An epithelium that is part of a bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchi epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchi epithelium" EXACT [OBOL:automatic]
synonym: "bronchial epithelium" EXACT []
synonym: "bronchial trunk epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk epithelium" EXACT [OBOL:automatic]
synonym: "bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchus epithelium" EXACT []
synonym: "epithelial tissue of bronchi" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bronchus" EXACT [OBOL:automatic]
synonym: "epithelium of bronchi" EXACT [OBOL:automatic]
synonym: "epithelium of bronchial trunk" EXACT [OBOL:automatic]
xref: BTO:0001845
xref: EFO:0000307
xref: FMA:67782
xref: MA:0001839
xref: ncithesaurus:Bronchial_Epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0004815 ! lower respiratory tract epithelium
relationship: part_of UBERON:0002185
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0002032
name: areola
def: "Subdivision of breast which consists of skin, connective tissue and smooth muscle bundle and modified sebaceous glands and which surrounds the nipple.[FMA]" [FMA:FMA, Wikipedia:Areola]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "areola mammae" RELATED LATIN [Wikipedia:Areola]
xref: FMA:67796
xref: http://upload.wikimedia.org/wikipedia/commons/a/ad/Female_Areola.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Brustwarze.JPG/200px-Brustwarze.JPG
xref: MA:0000788
xref: ncithesaurus:Areola
xref: OpenCyc:Mx4rvrcOL5wpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0002033
name: arrector muscle of hair
def: "tiny muscle fiber attached to each hair follicle, which contract to make the hairs stand on end, causing goose bumps. They exist in most mammals including humans." [Wikipedia:Arrector_pili]
subset: uberon_slim
synonym: "arrector pili" EXACT [FMA:67821, MA:0000778]
synonym: "arrector pili muscle" EXACT [EMAPA:26779, MP:0010679]
synonym: "arrector pili smooth muscle" EXACT [MA:0000778]
synonym: "arrector pilli" EXACT [MP:0010679]
synonym: "arrector pilli muscle" EXACT [MP:0010679]
xref: BTO:0005132
xref: EMAPA:26771
xref: EMAPA:26775
xref: EMAPA:26779
xref: FMA:67821
xref: MA:0000778
xref: SCTID:319910005
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: attaches_to UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0002034
name: suprachiasmatic nucleus
def: "The suprachiasmatic nucleus, or nuclei, (SCN), a tiny region on the brain's midline in a shallow impression of the optic chiasm, is responsible for controlling endogenous circadian rhythms. The neuronal and hormonal activities it generates regulate many different body functions over a 24-hour period. The SCN, pine cone shaped and the size of a grain of rice, interacts with many other regions of the brain. It contains several cell types and several different peptides and neurotransmitters. [WP,unvetted]." [Wikipedia:Suprachiasmatic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "nucleus suprachiasmaticus" RELATED LATIN [Wikipedia:Suprachiasmatic_nucleus]
synonym: "SCN" RELATED [BTO:0001822]
synonym: "suprachiasmatic nucleus of hypothalamus" EXACT []
xref: ABA:SCH
xref: BM:Die-Hy-SCN
xref: BTO:0001822
xref: EFO:0002475
xref: EV:0100228
xref: FMA:67883
xref: GAID:645
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000843
xref: MESH:A.08.186.211.730.385.357.342.625
xref: ncithesaurus:Suprachiasmatic_Nucleus
xref: NIF_GrossAnatomy:birnlex_1325
xref: SCTID:369132004
xref: TAO:0000441
xref: VHOG:0000036
xref: XAO:0004072
xref: ZFA:0000441
property_value: "spatially_disjoint_from" UBERON:0001934
property_value: "spatially_disjoint_from" UBERON:0002219
property_value: "spatially_disjoint_from" UBERON:0002625
property_value: "spatially_disjoint_from" UBERON:0002689
property_value: "spatially_disjoint_from" UBERON:0002690
property_value: "spatially_disjoint_from" UBERON:0007626
is_a: UBERON:0006568 ! hypothalamic nucleus
is_a: UBERON:0007251 ! preoptic nucleus
relationship: part_of UBERON:0001928 ! preoptic area
relationship: part_of UBERON:0002272 ! medial zone of hypothalamus
[Term]
id: UBERON:0002035
name: medial preoptic nucleus
def: "The medial preoptic nucleus is bounded laterally by the lateral preoptic nucleus, and medially by the preoptic periventricular nucleus. It releases gonadotropin-releasing hormone, controls copulation in males, and is larger in males than in females.[WP,unvetted]." [Wikipedia:Medial_preoptic_nucleus#Medial_preoptic_nucleus, Wikipedia:Sexually_dimorphic_nucleus]
subset: uberon_slim
synonym: "medial preoptic hypothalamic nucleus" EXACT []
xref: ABA:MPN
xref: FMA:67890
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000840
xref: NIF_GrossAnatomy:birnlex_706
xref: SCTID:369128005
property_value: "spatially_disjoint_from" UBERON:0001935
property_value: "spatially_disjoint_from" UBERON:0002206
property_value: "spatially_disjoint_from" UBERON:0002625
property_value: "spatially_disjoint_from" UBERON:0002634
property_value: "spatially_disjoint_from" UBERON:0002706
is_a: UBERON:0006568 ! hypothalamic nucleus
is_a: UBERON:0007251 ! preoptic nucleus
relationship: part_of UBERON:0007769 {source="MA"} ! medial preoptic region
[Term]
id: UBERON:0002036
name: striated muscle tissue
def: "Tissue which consists of striated muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue, Cardiac muscle tissue[FMA]." [FMA:67905, Wikipedia:Striated_muscle]
subset: uberon_slim
synonym: "striated muscle" EXACT []
xref: AAO:0010762
xref: AEO:0000140
xref: EHDAA2:0003140
xref: FMA:67905
xref: galen:StriatedMuscle
xref: MA:0002438
xref: ncithesaurus:Striated_Muscle_Tissue
xref: OpenCyc:Mx4rwAoze5wpEbGdrcN5Y29ycA
xref: WBbt:0005779
property_value: UBPROP:0000001 "Voluntary muscle tissue arranged in bundles of fibers.[AAO]" xsd:string
is_a: UBERON:0002385 ! muscle tissue
[Term]
id: UBERON:0002037
name: cerebellum
def: "Part of the metencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement[MESH]. A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe[BTO]. Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance[ZFA]." [BTO:0000232, https://sourceforge.net/tracker/index.php?func=detail&aid=3291162&group_id=76834&atid=1205376, ISBN:3764351209, MESH:A.08.186.211.132.810.428.200, ZFA:0000100]
comment: note that almost all AOs agree that the cerebellum is part of the hindbrain (sometimes specifically part of the metencephalon, which, when present, is part of the hindbrain). However, ABA has cerebellum and brain stem as partof siblings, with the hindbrain part of the brainstem
subset: uberon_slim
subset: vertebrate_core
synonym: "epencephalon-1" EXACT []
xref: AAO:0010485
xref: ABA:CB
xref: BM:CB
xref: BTO:0000232
xref: EFO:0000327
xref: EHDAA2:0000232
xref: EMAPA:17787
xref: EV:0100293
xref: FMA:67944
xref: GAID:595
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Cerebellum_NIH.png/200px-Cerebellum_NIH.png
xref: MA:0000198
xref: MAT:0000110
xref: MESH:A.08.186.211.132.810.428.200
xref: MIAA:0000110
xref: ncithesaurus:Cerebellum
xref: NIF_GrossAnatomy:birnlex_1489
xref: OpenCyc:Mx4rvl1eipwpEbGdrcN5Y29ycA
xref: SCTID:180924008
xref: TAO:0000100
xref: VHOG:0000024
xref: XAO:0003098
xref: ZFA:0000100
property_value: "spatially_disjoint_from" UBERON:0001893
property_value: "spatially_disjoint_from" UBERON:0002298
property_value: UBPROP:0000001 "Dorsal part of the hindbrain that coordinates muscle movement, posture, and balance.[AAO]" xsd:string
property_value: UBPROP:0000001 "Specialized brain region derived from the dorsal metencephalon (anterior hindbrain, and perhaps including posterior midbrain) and becoming distinctive late in the segmentation period. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0002680 ! regional part of metencephalon
relationship: develops_from UBERON:0006215 {evidence="definitional"} ! rhombic lip
relationship: part_of UBERON:0001895 {source="FMA", source="MA"} ! metencephalon
relationship: part_of UBERON:0002028 {source="NIF", source="ZFA"} ! hindbrain
[Term]
id: UBERON:0002038
name: substantia nigra
def: "Subdivision of the midbrain anterior to the midbrain tegmentum which contains darkly pigmented neurons[FMA]." [FMA:67947, Wikipedia:Substantia_nigra]
comment: TODO: In BTO and NIF, part of basal ganglion which is part of telencephalon - but this is inconsistent with being part of midbrain, if these are spatially disjoint, as in ABA
subset: uberon_slim
synonym: "nucleus of basis pedunculi" EXACT []
synonym: "Soemmering's substance" EXACT []
synonym: "substancia nigra" RELATED [Wikipedia:Substantia_nigra]
xref: BTO:0000143
xref: EFO:0000922
xref: EHDAA2:0004711
xref: EV:0100247
xref: FMA:67947
xref: GAID:581
xref: http://upload.wikimedia.org/wikipedia/commons/5/5f/Midbraincrosssection.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Midbraincrosssection.png/200px-Midbraincrosssection.png
xref: MA:0000210
xref: MAT:0000504
xref: MESH:A.08.186.211.132.659.687
xref: ncithesaurus:Substantia_Nigra
xref: NIF_GrossAnatomy:birnlex_789
xref: SCTID:279286002
xref: VHOG:0001573
is_a: UBERON:0009661 ! midbrain nucleus
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0001891 {source="multiple"} ! midbrain
relationship: part_of UBERON:0002420 {source="NIF"} ! basal ganglion
[Term]
id: UBERON:0002039
name: inferior phrenic vein
def: "The Inferior Phrenic Veins drain the diaphragm and follow the course of the inferior phrenic arteries; the right ends in the inferior vena cava; the left is often represented by two branches, one of which ends in the left renal or suprarenal vein, while the other passes in front of the esophageal hiatus in the diaphragm and opens into the inferior vena cava. [WP,unvetted]." [Wikipedia:Inferior_phrenic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "venae phrenicae inferiores" RELATED LATIN [Wikipedia:Inferior_phrenic_vein]
xref: FMA:68068
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png
xref: MA:0002195
xref: SCTID:286500002
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002040
name: bronchial artery
def: "In human anatomy, the bronchial arteries help supply the lungs with oxygenated blood. Although there is much variation, there are usually two bronchial arteries that run to the left lung, and one to the right lung. [WP,unvetted]." [Wikipedia:Bronchial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bronchial arterial tree" EXACT []
synonym: "rami bronchiales partis thoracicae aortae, arteriae bronchiales" RELATED LATIN [Wikipedia:Bronchial_artery]
xref: EMAPA:18608
xref: FMA:68109
xref: GAID:477
xref: http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray1032.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray1032.png/200px-Gray1032.png
xref: MA:0001923
xref: MESH:A.07.231.114.158
xref: ncithesaurus:Bronchial_Artery
xref: OpenCyc:Mx4r4sy0UiNbEd2AAAACs6hRXg
xref: SCTID:244247009
is_a: UBERON:0004573 ! systemic artery
relationship: supplies UBERON:0002048 ! lung
[Term]
id: UBERON:0002041
name: terminal bronchus
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
xref: FMA:68416
xref: MA:0000440
is_a: UBERON:0002185 ! bronchus
[Term]
id: UBERON:0002042
name: endothelium of lymphatic vessel
def: "An endothelium that is part of a lymphatic vessel [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "endothelium of lymph vessel" EXACT [OBOL:automatic]
synonym: "lymph vessel endothelium" EXACT [OBOL:automatic]
synonym: "lymphatic endothelium" EXACT [BTO:0004303]
synonym: "lymphatic vessel endothelium" EXACT []
xref: BTO:0004303
xref: FMA:68444
xref: MA:0000750
xref: MESH:A.10.272.491.332
xref: ncithesaurus:Lymphatic_Vessel_Endothelium
xref: TAO:0005258
xref: ZFA:0005258
property_value: UBPROP:0000001 "The vascular endothelium that lines the lymph vessels.[TAO]" xsd:string
is_a: UBERON:0004852 ! cardiovascular system endothelium
relationship: part_of UBERON:0001473
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001473 ! lymphatic vessel
relationship: part_of UBERON:0001473 ! lymphatic vessel
[Term]
id: UBERON:0002043
name: dorsal raphe nucleus
def: "A large raphe nucleus extending from the anterior part of the pons through the mesencephalon; its neurons are serotoninergic[NIF]. The dorsal raphe nucleus is a part of the raphe nucleus and consists of rostral and caudal subdivisions. The rostral aspect of the dorsal raphe is further divided into interfascicular, ventral, ventrolateral and dorsal subnuclei. The projections of the dorsal raphe have been found to vary topographically, and thus the subnuclei differ in their projections. An increased number of cells in the lateral aspects of the dorsal raphe is characteristic of humans and other primates. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855, NIF_GrossAnatomy:birnlex_982, Wikipedia:Dorsal_raphe_nucleus]
comment: TODO check dorsal vs inferior. ZF has no pons.
subset: uberon_slim
subset: vertebrate_core
synonym: "cell group b7" EXACT [FMA:68462]
synonym: "dorsal nucleus of the raphe" EXACT [BrainInfo:512, FMA:68462]
synonym: "dorsal nucleus raphe" EXACT [FMA:68462]
synonym: "dorsal raphe" EXACT [NIF_GrossAnatomy:birnlex_982]
synonym: "inferior raphe nucleus" EXACT [GO:0021724]
synonym: "nucleus raphe posterior, nucleus raphe dorsalis" RELATED LATIN [Wikipedia:Dorsal_raphe_nucleus]
synonym: "nucleus raphes dorsalis" EXACT [BrainInfo:512, BTO:0002434]
synonym: "nucleus raphes posterior" EXACT [FMA:TA]
synonym: "nucleus raphes posterior" RELATED [BTO:0002434]
synonym: "posterior raphe nucleus" EXACT [FMA:68462]
synonym: "posterior raphe nucleus" RELATED [GO:0021724]
xref: ABA:DR
xref: BM:MB-DR
xref: BTO:0002434
xref: EFO:0001919
xref: FMA:68462
xref: http://upload.wikimedia.org/wikipedia/commons/c/c6/Drn.png
xref: http://upload.wikimedia.org/wikipedia/en/thumb/c/c6/Drn.png/200px-Drn.png
xref: MA:0002980
xref: NIF_GrossAnatomy:birnlex_982
xref: TAO:0000366
xref: ZFA:0000366
property_value: "spatially_disjoint_from" UBERON:0002145
is_a: UBERON:0007415 ! nucleus of midbrain reticular formation
relationship: part_of UBERON:0002639 {source="Wikipedia"} ! midbrain reticular formation
relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei
[Term]
id: UBERON:0002044
name: ventral nucleus of posterior commissure
comment: This class was created automatically from a combination of ontologies
synonym: "Darkshevich's nucleus" EXACT [FMA:68464]
synonym: "nucleus of Darkschewitsch" EXACT [FMA:68464]
xref: ABA:ND
xref: BM:MB-D
xref: FMA:68464
xref: MA:0001072
xref: NIF_GrossAnatomy:birnlex_896
property_value: "spatially_disjoint_from" UBERON:0002551
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum
[Term]
id: UBERON:0002045
name: cuneate nucleus
def: "One of the dorsal column nuclei, the cuneate nucleus is a wedge-shaped nucleus in the closed part of the medulla oblongata. It contains cells that give rise to the cuneate tubercle, visible on the posterior aspect of the medulla. It lies laterally to the gracile nucleus and medial to the spinal trigeminal nucleus in the medulla. [WP,unvetted]." [Wikipedia:Cuneate_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Burdach's nucleus" EXACT []
synonym: "burdachs nucleus" EXACT [NIF_GrossAnatomy:birnlex_2640]
synonym: "cuneate" EXACT [NIF_GrossAnatomy:birnlex_2640]
synonym: "nucleus cuneatus" RELATED LATIN [Wikipedia:Cuneate_nucleus]
xref: ABA:CU
xref: BM:Me-Cu
xref: FMA:68465
xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png
xref: MA:0001035
xref: ncithesaurus:Cuneate_Nucleus
xref: NIF_GrossAnatomy:birnlex_2640
xref: SCTID:369072005
property_value: "spatially_disjoint_from" UBERON:0002161
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002046
name: thyroid gland
def: "A two-lobed endocrine gland found in all vertebrates, located in front of and on either side of the trachea in humans, and producing various hormones, such as triiodothyronine and calcitonin[BTO]. A highly vascular endocrine gland consisting of two lobes, one on either side of the trachea, joined by a narrow isthmus; it produces the thyroid hormones which are concerned in regulating the metabolic rate of the body[GAID]." [BTO:0001379, GAID:465, Wikipedia:Thyroid]
subset: organ_slim
subset: uberon_slim
synonym: "glandula thyroidea" RELATED LATIN [Wikipedia:Thyroid]
synonym: "thyroid" EXACT []
xref: AAO:0010544
xref: BTO:0001379
xref: EFO:0000861
xref: EHDAA2:0002028
xref: EHDAA:2148
xref: EHDAA:2975
xref: EMAPA:17068
xref: EMAPA:18698
xref: EMAPA:18827
xref: EV:0100133
xref: FMA:9603
xref: GAID:465
xref: galen:ThyroidGland
xref: http://upload.wikimedia.org/wikipedia/commons/a/a3/Illu_thyroid_parathyroid.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Illu_endocrine_system.jpg/200px-Illu_endocrine_system.jpg
xref: MA:0000129
xref: MAT:0000081
xref: MESH:A.06.407.900
xref: MIAA:0000081
xref: ncithesaurus:Thyroid_Gland
xref: OpenCyc:Mx4rvVjLT5wpEbGdrcN5Y29ycA
xref: SCTID:181117000
xref: VHOG:0000418
xref: XAO:0000162
property_value: UBPROP:0000001 "Either of paired structures located in the throat which develop from the ventral wall of the pharynx and excretes hormones involved in the morphological and functional changes during metamorphosis as well as influencing other tissues.[AAO]" xsd:string
is_a: UBERON:0002368 ! endocrine gland
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0007689 ! thyroid diverticulum
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0002047
name: pontine raphe nucleus
def: "The Pontine raphe nucleus is one of the raphe nuclei. It is located in the pontine tegmentum. [WP,unvetted]." [Wikipedia:Pontine_raphe_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nucleus raphes pontis" RELATED LATIN [Wikipedia:Pontine_raphe_nucleus]
synonym: "raphe of pons" EXACT []
synonym: "raphe pontis" EXACT [FMA:68875, FMA:TA]
synonym: "raphe pontis nucleus" RELATED []
xref: ABA:RPO
xref: FMA:68875
xref: MA:0001022
xref: NIF_GrossAnatomy:birnlex_1110
property_value: "spatially_disjoint_from" UBERON:0002148
property_value: "spatially_disjoint_from" UBERON:0002267
property_value: "spatially_disjoint_from" UBERON:0002587
property_value: "spatially_disjoint_from" UBERON:0003004
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0003023 ! pontine tegmentum
relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei
[Term]
id: UBERON:0002048
name: lung
def: "Respiration organ present in all air-breathing animals whose principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere[WP]. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax[GO]." [BTO:0000763, Wikipedia:Lung]
comment: respiration organ in all air-breathing animals, including most tetrapods, a few fish and a few snails. In mammals and the more complex life forms, the two lungs are located in the chest on either side of the heart. Their principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere. This exchange of gases is accomplished in the mosaic of specialized cells that form millions of tiny, exceptionally thin-walled air sacs called alveoli. // Avian lungs do not have alveoli as mammalian lungs do, they have Faveolar lungs. They contain millions of tiny passages known as para-bronchi, connected at both ends by the dorsobronchi // Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP]
subset: major_organ
subset: organ_slim
subset: uberon_slim
synonym: "pulmo" EXACT LATIN []
xref: AAO:0000275
xref: AAO:0010567
xref: BTO:0000763
xref: EFO:0000934
xref: EHDAA2:0001042
xref: EHDAA:1554
xref: EHDAA:2205
xref: EMAPA:16728
xref: EV:0100042
xref: FMA:7195
xref: GAID:345
xref: galen:Lung
xref: MA:0000415
xref: MAT:0000135
xref: MESH:A.04.411
xref: MIAA:0000135
xref: ncithesaurus:Lung
xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA
xref: SCTID:181216001
xref: VHOG:0000310
xref: XAO:0000119
property_value: UBPROP:0000001 "Either of two organs which allow gas exchange absorbing oxygen from inhaled air and releasing carbon dioxide with exhaled air.[AAO]" xsd:string
is_a: UBERON:0000117 {source="GO"} ! respiratory tube
is_a: UBERON:0000171 ! respiration organ
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: develops_from UBERON:0000118 ! lung bud
relationship: part_of UBERON:0000170 {note="some species only have a single lung"} ! pair of lungs
relationship: part_of UBERON:0002224 ! thoracic cavity
relationship: surrounded_by UBERON:0009778 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! pleural sac
[Term]
id: UBERON:0002049
name: vasculature
def: "an interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Examples: vasculature of lung, vasculature of face." [ZFA:0005249]
comment: see also: vascular system. Consider merging?
subset: uberon_slim
subset: vertebrate_core
synonym: "vascular network" EXACT [FMA:69050]
xref: BTO:0003718
xref: FMA:69050
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png
xref: TAO:0005249
xref: ZFA:0005249
is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster
relationship: composed_primarily_of UBERON:0000055 ! vessel
relationship: part_of UBERON:0007798 ! vascular system
[Term]
id: UBERON:0002050
name: embryonic structure
def: "Anatomical structure that is part of an embryo." [BTO:0000174, ZFIN:curator]
comment: Note in FMA embryo is_a embryonic structure
subset: inconsistent_with_fma
subset: vertebrate_core
synonym: "developing embryonic structure" EXACT [FBbt:00004208]
synonym: "developing structure" RELATED []
synonym: "embryonale Struktur" RELATED [BTO:0000174]
synonym: "embryonic anatomical structure" EXACT [RETIRED_EHDAA2:0003169]
xref: AAO:0000138
xref: AEO:0000125
xref: BILA:0000034
xref: BTO:0000174
xref: EFO:0000461
xref: FBbt:00004208
xref: FMA:69067
xref: GAID:407
xref: MESH:A.16
xref: ncithesaurus:Embryonic_Structure
xref: RETIRED_EHDAA2:0003169
xref: SCTID:667009
xref: TAO:0001105
xref: VSAO:0000178
xref: XAO:0003042
xref: ZFA:0001105
property_value: UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[AAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[TAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells.[VSAO]" xsd:string
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0002051
name: epithelium of bronchiole
def: "An epithelium that is part of a bronchiole [Obol]." [OBOL:automatic]
comment: Note that in FMA2 and FMA3, lobular bronchiole is an exact synonym of bronchiole; however there are two distinct terms for the corresponding epithelium.
synonym: "bronchiolar epithelium" EXACT [BTO:0001866]
synonym: "bronchiole epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchiole epithelium" EXACT []
synonym: "epithelial tissue of bronchiole" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lobular bronchiole" EXACT [OBOL:automatic]
synonym: "epithelium of lobular bronchiole" EXACT [OBOL:automatic]
synonym: "lobular bronchiole epithelial tissue" EXACT [OBOL:automatic]
synonym: "lobular bronchiole epithelium" EXACT [OBOL:automatic]
xref: BTO:0001866
xref: FMA:62497
xref: FMA:69077
xref: MA:0001772
xref: ncithesaurus:Bronchiole_Epithelium
is_a: UBERON:0000115 ! lung epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003350 ! epithelium of mucosa
is_a: UBERON:0004815 ! lower respiratory tract epithelium
relationship: part_of UBERON:0002186
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002186 ! bronchiole
relationship: part_of UBERON:0002186 ! bronchiole
relationship: part_of UBERON:0005039 ! mucosa of bronchiole
[Term]
id: UBERON:0002052
name: capsule of adrenal gland
comment: This class was created automatically from a combination of ontologies
synonym: "adrenal gland capsule" EXACT []
xref: FMA:69087
xref: MA:0000117
xref: ncithesaurus:Adrenal_Gland_Capsule
is_a: UBERON:0003893 ! capsule
relationship: surrounds UBERON:0002369
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0002369 ! adrenal gland
relationship: surrounds UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0002053
name: zona glomerulosa of adrenal gland
def: "The zona glomerulosa of the adrenal gland is the most superficial layer of the adrenal cortex, lying directly beneath the adrenal gland's capsule. Its cells are ovoid in shape and are arranged in clusters or arches. In response to increased potassium levels, renin or decreased blood flow to the kidneys, cells of the zona glomerulosa produce and secrete the mineralocorticoid aldosterone into the blood as part of the renin-angiotensin system. Aldosterone regulates the body's concentration of electrolytes, primarily sodium and potassium, by acting on the distal convoluted tubule of kidney nephrons to: increase sodium reabsorption increase potassium excretion increase water reabsorption through osmosis The enzyme aldosterone synthase acts in this location. [WP,unvetted]." [Wikipedia:Zona_glomerulosa]
subset: uberon_slim
synonym: "adrenal gland zona glomerulosa" EXACT [MA:0001891]
synonym: "glomerulosa" RELATED [BTO:0000048]
synonym: "zona glomerulosa" EXACT []
synonym: "zona glomerulosa of suprarenal gland" EXACT []
xref: BTO:0000048
xref: FMA:69225
xref: GAID:449
xref: http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png
xref: MA:0001891
xref: MESH:A.06.407.071.140.960
xref: SCTID:21476003
is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone
relationship: part_of UBERON:0001235 ! adrenal cortex
[Term]
id: UBERON:0002054
name: zona fasciculata of adrenal gland
def: "The zona fasciculata constitutes the middle zone of the adrenal cortex, sitting directly beneath the zona glomerulosa. Constituent cells are organized into bundles or 'fascicles'. The zona fasciculata chiefly produces glucocorticoids (mainly cortisol in the human), which regulates the metabolism of glucose, especially in times of stress (e.g. , part of the fight-or-flight response). This tissue also generates a small amount of weak androgens. In certain animals such as rodents, the lack of 17alpha-hydroxylase results in the synthesis of corticosterone instead of cortisol. Steroid-producing adrenal tumours and hyperplasias of the zona fasciculata result in excess cortisol production and are the cause for adrenal Cushing's syndrome. The genetic disorder McCune-Albright syndrome can also present Cushing's syndrome in affected patients. [WP,unvetted]." [Wikipedia:Zona_fasciculata]
subset: uberon_slim
synonym: "adrenal gland zona fasciculata" EXACT [MA:0001890]
synonym: "zona fasciculata" EXACT []
synonym: "zona fasciculata of suprarenal gland" EXACT []
xref: BTO:0000050
xref: FMA:69234
xref: GAID:448
xref: http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png
xref: MA:0001890
xref: MESH:A.06.407.071.140.950
xref: SCTID:56069004
is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone
relationship: part_of UBERON:0001235 ! adrenal cortex
[Term]
id: UBERON:0002055
name: zona reticularis of adrenal gland
def: "The zona reticularis is the innermost layer of the adrenal cortex, lying deep to the zona fasciculata and superficial to the adrenal medulla. The cells are arranged cords that project in different directions giving a net-like appearance (L. reticulum - net). Cells in the zona reticularis produce precursor androgens including dehydroepiandrosterone (DHEA) and androstenedione from cholesterol. DHEA is further converted to DHEA-sulfate via a sulfotransferase, SULT2A1. These precursors are not further converted in the adrenal cortex as the cells lack 3β-hydroxysteroid dehydrogenase. Instead, they are released into the blood stream and taken up in the testis and ovaries to produce testosterone and the estrogens respectively. In some animals like rodents, the reticularis layer does contain 3β-hydroxysteroid dehydrogenase, which along with other enzymes present results in the production of corticosteroids like the fasciculata. In rodents too, the lack of 17alpha-hydroxylase results in the synthesis of corticosterone instead of cortisol as in the human. [WP,unvetted]." [Wikipedia:Zona_reticularis]
subset: uberon_slim
synonym: "adrenal gland zona reticularis" EXACT [MA:0001892]
synonym: "zona reticularis" EXACT []
synonym: "zona reticularis of suprarenal gland" EXACT []
xref: FMA:69236
xref: GAID:450
xref: http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png
xref: MA:0001892
xref: MESH:A.06.407.071.140.970
xref: SCTID:47325000
is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone
relationship: part_of UBERON:0001235 ! adrenal cortex
[Term]
id: UBERON:0002056
name: inferior suprarenal artery
def: "Each renal artery gives off some small inferior suprarenal branches to the suprarenal gland, the ureter, and the surrounding cellular tissue and muscles. [WP,unvetted]." [Wikipedia:Inferior_suprarenal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria suprarenalis inferior" RELATED LATIN [Wikipedia:Inferior_suprarenal_artery]
xref: FMA:69264
xref: http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png
xref: MA:0002056
xref: ncithesaurus:Inferior_Suprarenal_Artery
xref: SCTID:303426004
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002057
name: phrenic artery
def: "The inferior phrenic arteries are two small vessels, which supply the diaphragm but present much variety in their origin. They may arise separately from the front of the aorta, immediately above the celiac artery, or by a common trunk, which may spring either from the aorta or from the celiac artery. Sometimes one is derived from the aorta, and the other from one of the renal arteries; they rarely arise as separate vessels from the aorta. They diverge from one another across the crura of the diaphragm, and then run obliquely upward and lateralward upon its under surface. The left phrenic passes behind the esophagus, and runs forward on the left side of the esophageal hiatus. The right phrenic passes behind the inferior vena cava, and along the right side of the foramen which transmits that vein. Near the back part of the central tendon each vessel divides into a medial and a lateral branch. The medial branch curves forward, and anastomoses with its fellow of the opposite side, and with the musculophrenic and pericardiacophrenic arteries. The lateral branch passes toward the side of the thorax, and anastomoses with the lower intercostal arteries, and with the musculophrenic. The lateral branch of the right phrenic gives off a few vessels to the inferior vena cava; and the left one, some branches to the esophagus. Each vessel gives off superior suprarenal branches to the suprarenal gland of its own side. The spleen and the liver also receive a few twigs from the left and right vessels respectively. [WP,unvetted]." [Wikipedia:Phrenic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:69330
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png
xref: MA:0002019
xref: ncithesaurus:Phrenic_Artery
is_a: UBERON:0004573 ! systemic artery
[Term]
id: UBERON:0002058
name: ciliary ganglion
def: "The ciliary ganglion is a parasympathetic ganglion located in the posterior orbit. It measures 1–2 millimeters in diameter and contains approximately 2,500 neurons. Preganglionic axons from the Edinger-Westphal nucleus form synapses with these cells. The postganglionic axons run in the short ciliary nerves and innervate two eye muscles: the sphincter pupillae constricts the pupil, known as Miosis. The opposite, Mydriasis, is the dilation of the pupil. the ciliaris muscle contracts, releasing tension on the Zonular Fibers, making the lens more convex, also known as accommodation. Both of these muscles are involuntary – they are controlled by the autonomic nervous system. It is one of four parasympathetic ganglia of the head and neck.. [WP,unvetted]." [Wikipedia:Ciliary_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ganglion ciliare" RELATED LATIN [Wikipedia:Ciliary_ganglion]
xref: EFO:0002559
xref: EHDAA2:0000251
xref: EHDAA:5623
xref: EMAPA:18222
xref: FMA:6964
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Augennerven.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Augennerven.jpg/200px-Augennerven.jpg
xref: MA:0001136
xref: NIF_GrossAnatomy:nlx_anat_100304
xref: SCTID:279281007
xref: VHOG:0000805
is_a: UBERON:0001808 ! parasympathetic ganglion
[Term]
id: UBERON:0002059
name: submandibular ganglion
def: "The submandibular ganglion (or submaxillary ganglion in older texts) is part of the human autonomic nervous system. It is one of four parasympathetic ganglia of the head and neck.. [WP,unvetted]." [Wikipedia:Submandibular_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Blandin`s ganglion" RELATED [BTO:0001318]
synonym: "ganglion submandibulare" RELATED [BTO:0001318]
synonym: "ganglion submandibulare" RELATED LATIN [Wikipedia:Submandibular_ganglion]
synonym: "lingual ganglion" RELATED [https://sourceforge.net/tracker/index.php?func=detail&aid=2979467&group_id=76834&atid=1205376, MA:0002470]
synonym: "maxillary ganglion" RELATED [MA:0002470]
synonym: "submaxillary ganglion" RELATED [MA:0002470]
xref: BTO:0001318
xref: EHDAA2:0001942
xref: EHDAA:6710
xref: FMA:6966
xref: http://upload.wikimedia.org/wikipedia/commons/8/83/Gray778.png
xref: http://upload.wikimedia.org/wikipedia/en/thumb/8/83/Gray778.png/200px-Gray778.png
xref: MA:0002470
xref: ncithesaurus:Submandibular_Ganglion
xref: SCTID:279282000
is_a: UBERON:0001808 {source="MA"} ! parasympathetic ganglion
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001736 ! submandibular gland
[Term]
id: UBERON:0002060
name: femoral artery
def: "The femoral artery is a large artery in the muscles of the thigh. It is a continuation of external iliac artery where it enters the femoral triangle at the mid inguinal point behind the inguinal ligament. It leaves femoral triangle through apex beneath the sartorius muscle. It enters the popliteal fossa by passing through the 5th osseo-aponeurotic(adductor hiatus) opening of adductor magnus where it becomes the Popliteal Artery. [WP,unvetted]." [Wikipedia:Femoral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria femoralis" RELATED LATIN [Wikipedia:Femoral_artery]
xref: AAO:0010222
xref: BTO:0001624
xref: FMA:70248
xref: GAID:494
xref: galen:FemoralArtery
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray546.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray546.png/200px-Gray546.png
xref: MA:0001951
xref: MESH:A.07.231.114.351
xref: ncithesaurus:Femoral_Artery
xref: OpenCyc:Mx4rwHMI05wpEbGdrcN5Y29ycA
xref: SCTID:244332003
property_value: UBPROP:0000001 "Artery which supplies blood via branches to the hindlimbs.[AAO]" xsd:string
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002061
name: truncus arteriosus
def: "The truncus arteriosus and bulbus cordis are divided by the aorticopulmonary septum. The truncus arteriosus gives rise to the ascending aorta and the pulmonary trunk. The bulbus cordis gives rise to the smooth parts (outflow tract) of the left and right ventricles." [Wikipedia:Truncus_arteriosus_(embryology)]
comment: AO notes: assume spelling error for ncit
subset: uberon_slim
xref: EHDAA2:0004143
xref: FMA:70301
xref: GAID:554
xref: MA:0000103
xref: MESH:A.07.541.278.930
xref: ncithesaurus:Trancus_Arteriosus
xref: OpenCyc:Mx4rquH9YKgNEdudWQACs5b6Bw
xref: SCTID:308828009
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001637 {source="EHDAA2"} ! artery
is_a: UBERON:0003498 ! heart blood vessel
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0005432 {source="EHDAA2"} ! aortic sac
relationship: part_of UBERON:0004145 {source="MA"} ! outflow tract
relationship: part_of UBERON:0005498 {source="EHDAA2"} ! primitive heart tube
[Term]
id: UBERON:0002062
name: endocardial cushion
def: "The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves[GO]. Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves[ZFA]." [GO:0003197, Wikipedia:Endocardial_cushion, ZFIN:curator]
comment: GO graph seems to suggest this is an endothelium. WP: The endocardial cushions are thought to arise from a subset of endothelial cells that undergo epithelial to mesenchymal transformation, a process whereby these cells break cell-to-cell contacts and migrate into the cardiac jelly (towards to interior of the heart tube). Latest (2010-06-01) new def suggested for GO, added above. Note that EHDAA2 has a more detailed model which we may later adopt
subset: uberon_slim
subset: vertebrate_core
synonym: "atrioventricular cushion" EXACT [Wikipedia:Endocardial_cushion]
synonym: "cardiac cushion" EXACT [PMID:15797462]
synonym: "endocardial cushion tissue" EXACT [EHDAA2:0000434]
synonym: "endocardial cushions" RELATED PLURAL []
xref: EHDAA2:0000434
xref: EHDAA2:0004028
xref: EHDAA:2586
xref: EMAPA:16696
xref: FMA:70302
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray465.png/200px-Gray465.png
xref: MA:0000078
xref: TAO:0001317
xref: VHOG:0000932
xref: XAO:0004189
xref: ZFA:0001317
property_value: UBPROP:0000001 "Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from endocardial ring (TAO:0005072)[TAO]" xsd:string
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0009751 ! cardiac mesenchyme
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002", source="Wikipedia"} ! neural crest
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000948 {source="ZFA"} ! heart
relationship: part_of UBERON:0002165 {source="ZFA"} ! endocardium
[Term]
id: UBERON:0002063
name: sinus venosus
def: "The sinus venosus is a large quadrangular cavity which precedes the atrium on the venous side of the chordate heart. In humans, it exists distinctly only in the embryonic heart, where it is found between the two venae cavae. In the adult, it is incorporated into the wall of the right atrium to form a smooth part called the sinus venarum, also known as the venarum sinus, which is separated from the rest of the atrium by a ridge of fibres called the crista terminalis. The sinus venosus also forms the SA node and the coronary sinus. In the embryo, the thin walls of the sinus venosus are connected below with the right ventricle, and medially with the left atrium, but are free in the rest of their extent. It receives blood from the vitelline vein, umbilical vein and common cardinal vein. It originally starts as a paired structure but shifts towards associating only with the right atrium as the embryonic heart develops. The left portion shrinks in size and eventually forms the coronary sinus and oblique vein of the left atrium, whereas the right part becomes incorporated into the right atrium to form the sinus venarum." [Wikipedia:Sinus_venosus]
comment: In zebrafish, "the sinus venosus also acts as a pacemaker and is the first to contract"[ZFA:0000154]
subset: uberon_slim
subset: vertebrate_core
synonym: "inflow tract" EXACT [ZFA:0000154]
synonym: "sinus venarum" RELATED [Wikipedia:Sinus_venosus]
synonym: "sinus venosus cordis" RELATED LATIN [Wikipedia:Sinus_venosus]
synonym: "venarum" RELATED [Wikipedia:Sinus_venosus]
synonym: "venarum sinus" RELATED [Wikipedia:Sinus_venosus]
synonym: "venosus" RELATED [Wikipedia:Sinus_venosus]
xref: AAO:0010505
xref: EHDAA2:0001839
xref: EHDAA:480
xref: EMAPA:16237
xref: FMA:70303
xref: http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray465.png/200px-Gray465.png
xref: ncithesaurus:Sinus_Venarum
xref: ncithesaurus:Sinus_Venosus
xref: TAO:0000154
xref: VHOG:0000177
xref: ZFA:0000154
property_value: UBPROP:0000001 "Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four components of the heart. The sinus venosus also acts as a pacemaker and is the first to contract. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000001 "Part of the circulatory system which receives blood from the systemic veins and contracts to pump the blood into the atrium of the heart.[AAO]" xsd:string
is_a: UBERON:0004151 ! cardiac chamber
disjoint_from: UBERON:0006615 ! venous sinus
relationship: develops_from UBERON:0007278 {source="ZFA"} ! presumptive sinus venosus
relationship: part_of UBERON:0002350 {source="VHOG"} ! conducting system of heart
[Term]
id: UBERON:0002064
name: common cardinal vein
def: "Either of a pair of large transverse venous sinuses that conduct blood from the cardinal veins to the sinus venosus of the vertebrate embryo." [BTO:0004388, Wikipedia:Common_cardinal_veins]
comment: Taxon notes: Paired in gnathostomes; with only a vestige of the right duct in the adult hagfish (21) and the left duct atrophying at metamorphosis in the lamprey (22)[PMID:20959416, S1]
subset: uberon_slim
subset: vertebrate_core
synonym: "Cuvierian duct" RELATED []
synonym: "duct of Cuvier" RELATED []
xref: AAO:0011033
xref: BTO:0004388
xref: EHDAA2:0000304
xref: EHDAA:1314
xref: EMAPA:16356
xref: FMA:70308
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray477.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray477.svg/200px-Gray477.svg.png
xref: ncithesaurus:Common_Cardinal_Vein
xref: SCTID:308783008
xref: TAO:0000186
xref: VHOG:0000112
xref: XAO:0000373
xref: ZFA:0000186
property_value: UBPROP:0000001 "Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein (duct of Cuvier; misnamed the vitelline vein) that leads across the yolk cell to the heart's sinus venosus. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000001 "Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein, also known as the duct of Cuvier that leads to the heart's sinus venosus.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of cardinal system (TAO:0000096)[TAO]" xsd:string
is_a: UBERON:0003513 ! trunk blood vessel
is_a: UBERON:0004344 ! cardinal vein
relationship: part_of UBERON:0002201 ! vasculature of trunk
[Term]
id: UBERON:0002065
name: postcardinal vein
def: "Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein. " [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "axial vein" RELATED []
synonym: "caudal cardinal veins" RELATED []
synonym: "PCV" RELATED []
synonym: "posterior cardinal vein" EXACT []
xref: AAO:0010511
xref: BTO:0004386
xref: EHDAA2:0001486
xref: EHDAA:1316
xref: EMAPA:16357
xref: FMA:70314
xref: ncithesaurus:Posterior_Cardinal_Vein
xref: SCTID:308781005
xref: TAO:0000477
xref: VHOG:0000111
xref: XAO:0000241
xref: ZFA:0000477
property_value: UBPROP:0000001 "Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein. [TAO]" xsd:string
property_value: UBPROP:0000001 "Either of two veins which receive blood as an alternate route from the kidneys.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of axial vasculature (TAO:0001073)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of cardinal system (TAO:0000096)[TAO]" xsd:string
is_a: UBERON:0003513 ! trunk blood vessel
is_a: UBERON:0004344 ! cardinal vein
relationship: part_of UBERON:0002201 ! vasculature of trunk
[Term]
id: UBERON:0002066
name: umbilical vein
def: "The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]." [Wikipedia:Umbilical_vein]
subset: uberon_slim
synonym: "vena umbilicalis" RELATED LATIN [Wikipedia:Umbilical_vein]
xref: BTO:0001509
xref: EFO:0001940
xref: EHDAA:1034
xref: EHDAA:488
xref: EMAPA:16243
xref: EMAPA:16375
xref: EV:0100392
xref: FMA:70317
xref: GAID:542
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png
xref: MA:0002249
xref: MESH:A.07.231.908.670.874
xref: ncithesaurus:Umbilical_Vein
xref: OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g
xref: RETIRED_EHDAA2:0002107
xref: SCTID:367567000
xref: VHOG:0000015
is_a: UBERON:0001638 ! vein
is_a: UBERON:0010260 ! umbilical blood vessel
relationship: overlaps UBERON:0002331 {source="cjm"} ! umbilical cord
[Term]
id: UBERON:0002067
name: dermis
def: "The dermis is a layer of skin between the epidermis (with which it makes up the skin) and subcutaneous tissues, and is composed of two layers, the papillary and reticular dermis[WP]." [Wikipedia:Dermis, ZFIN:curator]
comment: Editor notes: Consider adding a layer-of-skin grouping class for all skin layers
subset: uberon_slim
subset: vertebrate_core
synonym: "corium" RELATED [BTO:0000294]
synonym: "cutis" RELATED [BTO:0000294]
synonym: "dermis; corium" RELATED LATIN [Wikipedia:Dermis]
synonym: "vertebrate dermis" EXACT []
xref: AAO:0000128
xref: BTO:0000294
xref: EFO:0000953
xref: EV:0100154
xref: FMA:70323
xref: GAID:1321
xref: http://upload.wikimedia.org/wikipedia/commons/2/23/EpidermisPainted.svg
xref: MA:0000152
xref: MAT:0000153
xref: MESH:A.17.815.180
xref: MIAA:0000153
xref: ncithesaurus:Dermis
xref: SCTID:361696001
xref: TAO:0001119
xref: VHOG:0000108
xref: XAO:0000217
xref: ZFA:0001119
property_value: UBPROP:0000001 "A collagenous layer of the skin subjacent to the epidermis and covering the hypodermis. It contains various types of cells (e.g. fibroblasts, pigment cells, nerve, blood vessels and scales. Le Guellec et al, 2004.[TAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 {source="FMA"} ! organ component layer
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: adjacent_to UBERON:0001003 ! epidermis
relationship: adjacent_to UBERON:0002072 ! hypodermis
relationship: develops_from UBERON:0004016 {source="XAO"} ! dermatome
relationship: develops_from UBERON:0010083 {evidence="definitional"} ! future dermis
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0002097 {source="FMA"} ! skin of body
relationship: part_of UBERON:0002199 ! integument
[Term]
id: UBERON:0002068
name: urachus
def: "The urachus is an embryological canal connecting the urinary bladder of the fetus with the allantois, a structure that contributes to the formation of the umbilical cord. The lumen (inside) of the urachus is normally obliterated during embryonic development, transforming the urachus into a solid cord, a functionless remnant. The urachus lies in the space of Retzius, between the transversalis fascia anteriorly and the peritoneum posteriorly. [WP,unvetted]." [Wikipedia:Urachus]
comment: TODO check. Wikipedia and DBPedia disagree - is this a remnant of the allantois?
subset: uberon_slim
xref: EHDAA2:0002137
xref: EHDAA:7016
xref: EHDAA:9332
xref: EMAPA:18323
xref: FMA:70343
xref: GAID:1313
xref: http://upload.wikimedia.org/wikipedia/commons/6/63/Gray1156.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray1156.png/200px-Gray1156.png
xref: MA:0001701
xref: MESH:A.16.254.835
xref: ncithesaurus:Urachus
xref: RETIRED_EHDAA2:0002138
xref: SCTID:276858000
xref: VHOG:0000735
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: develops_from UBERON:0004340 ! allantois
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0002069
name: stratum granulosum of epidermis
def: "A layer of the epidermis found between the stratum corneum (and possibly stratum lucidum) and stratum spinosum.[1] In this layer, keratinocytes are now called granular cells, and contain keratohyalin and lamellar granules." [Wikipedia:Stratum_granulosum]
synonym: "epidermis granular layer" RELATED []
synonym: "epidermis stratum granulosum" EXACT []
synonym: "granular layer of epidermis" EXACT [FMA:70344]
synonym: "stratum granulosum" EXACT [BTO:0000361]
xref: BTO:0000361
xref: FMA:70344
xref: MA:0000805
xref: ncithesaurus:Stratum_Granulosum
xref: SCTID:418563001
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: adjacent_to UBERON:0002026 ! stratum spinosum of epidermis
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002070
name: superior pancreaticoduodenal artery
def: "The superior pancreaticoduodenal artery is an artery that supplies blood to the duodenum and pancreas. It is a branch of the gastroduodenal artery, which comes from the common hepatic artery of the celiac trunk. The common hepatic itself becomes the proper hepatic after giving off the gastroduodenal artery and goes on to supply the right and left lobes of the liver. The term superior distinguishes the superior pancreaticoduodenal artery from the inferior pancreaticoduodenal artery, which a branch of the superior mesenteric artery. These arteries, together with the pancreatic branches of the splenic artery, form connections or anastomoses with one another, allowing blood to perfuse the pancreas and duodenum through multiple channels. The artery splits into two branches: the anterior superior pancreaticoduodenal artery supplies the anterior margins of the duodenum and pancreas the posterior superior pancreaticoduodenal artery supplies the posterior margins of these organs [WP,unvetted]." [Wikipedia:Superior_pancreaticoduodenal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria pancreaticoduodenalis superior" RELATED LATIN [Wikipedia:Superior_pancreaticoduodenal_artery]
synonym: "bauchspeicheldrüsenzwölffingerdarmpulsader@de" EXACT [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Terminology.shtml]
synonym: "superior pancreatico-duodenal artery" EXACT []
synonym: "superior pancreatoduodenal artery" EXACT [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Terminology.shtml]
xref: FMA:70437
xref: http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray533.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Gray533.png/200px-Gray533.png
xref: MA:0002015
xref: ncithesaurus:Superior_Pancreatico-Duodenal_Artery
xref: SCTID:244272009
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0009658 ! pancreaticoduodenal artery
relationship: part_of UBERON:0010132 ! gastroduodenal artery
relationship: supplies UBERON:0002108 ! small intestine
[Term]
id: UBERON:0002071
name: stratum lucidum of epidermis
def: "the layer of lightly staining corneocytes foud between the stratum granulosum and stratum corneum layers; found primarily in the thick epidermis of the palmar and plantar skin and is composed of three to five layers of dead, flattened keratinocytes." [MP:0009610, Wikipedia:Stratum_lucidum]
comment: Located between the stratum granulosum and stratum corneum layers, it is composed of three to five layers of dead, flattened keratinocytes. he keratinocytes of the stratum lucidum do not feature distinct boundaries and are filled with eleidin, an intermediate form of keratin.
synonym: "epidermis stratum lucidum" EXACT []
synonym: "stratum conjunctum of epidermis" EXACT []
synonym: "stratum lucidum" BROAD [BTO:0000364]
xref: BTO:0000364
xref: FMA:70540
xref: MA:0000806
xref: ncithesaurus:Stratum_Conjunctum
xref: ncithesaurus:Stratum_Lucidum
xref: SCTID:419156002
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: adjacent_to UBERON:0002027 ! stratum corneum of epidermis
relationship: adjacent_to UBERON:0002069 ! stratum granulosum of epidermis
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002072
name: hypodermis
def: "Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. The hypodermis is used mainly for fat storage[WP]. A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells[FMA]." [Wikipedia:Hypodermis, ZFIN:curator]
comment: Note that this class combines superficial fascia and hypodermis in FMA. Note also BTO has 'subcutis'
subset: uberon_slim
subset: vertebrate_core
synonym: "hypoderm" EXACT []
synonym: "subcutaneous tissue" RELATED [Wikipedia:Hypodermis]
synonym: "subcutis" RELATED []
synonym: "superficial fascia" EXACT [FMA:9630]
synonym: "tela subcutanea" EXACT [FMA:9630, FMA:TA]
synonym: "vertebrate hypodermis" EXACT []
xref: BTO:0004525
xref: FMA:70544
xref: FMA:9630
xref: GAID:929
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png
xref: MESH:A.10.165.887
xref: ncithesaurus:Superficial_Fascia
xref: SCTID:361713003
xref: TAO:0001136
xref: ZFA:0001136
property_value: UBPROP:0000001 "A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells. Le Guellec et al, 2004.[TAO]" xsd:string
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: adjacent_to UBERON:0002067 ! dermis
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0002199 {source="ZFA"} ! integument
[Term]
id: UBERON:0002073
name: hair follicle
def: "a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open[GO]." [Wikipedia:Hair_follicle]
comment: TODO - add new class for MA:0002910 vibrissa follicle
subset: organ_slim
subset: uberon_slim
synonym: "folliculus pili" RELATED LATIN [Wikipedia:Hair_follicle]
synonym: "vibrissa follicle" RELATED [MP:0010234]
xref: BTO:0000554
xref: EFO:0002464
xref: EMAPA:29741
xref: EV:0100156
xref: FMA:70660
xref: GAID:934
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Hair_follicle-en.svg
xref: MA:0000154
xref: MESH:A.10.272.497.500
xref: ncithesaurus:Hair_Follicle
xref: OpenCyc:Mx4rvVjOI5wpEbGdrcN5Y29ycA
xref: SCTID:280830006
xref: VHOG:0001268
is_a: UBERON:0000062 {source="Wikipedia"} ! organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0005086 ! hair follicle placode
relationship: overlaps UBERON:0001037 ! strand of hair
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002074
name: hair shaft
def: "The non-growing portion of a hair which protrudes from the skin, i.e., from the follicle[BTO]. the cuticle, and/or cortex and/or medulla of a hair[MP]." [BTO:0004672, MP:0003809]
comment: TODO - add distinct subclasses for coat hair vs vibrissa hair
synonym: "scapus pili" RELATED [BTO:0004672]
xref: BTO:0004672
xref: FMA:70728
xref: MA:0000159
xref: ncithesaurus:Shaft_of_the_Hair
xref: SCTID:361359004
is_a: UBERON:0000021 ! cutaneous appendage
relationship: part_of UBERON:0001037 {source="FMA"} ! strand of hair
[Term]
id: UBERON:0002075
name: viscus
def: "An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper." [BTO:0001491, Wikipedia:Viscus]
comment: general anatomical term in FMA. Note that we place the MA class here temporarily, although properly systems should be distinguished from organs
subset: organ_slim
subset: uberon_slim
synonym: "viscera" RELATED []
synonym: "visceral organ" EXACT [RETIRED_EHDAA2:0002201]
xref: AAO:0010386
xref: BTO:0001491
xref: EHDAA:512
xref: EMAPA:16245
xref: FMA:7085
xref: MA:0000019
xref: MESH:A.01.960
xref: ncithesaurus:Viscera
xref: RETIRED_EHDAA2:0002201
xref: SCTID:118760003
xref: XAO:0003034
property_value: UBPROP:0000001 "An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper.[AAO]" xsd:string
is_a: UBERON:0005177 ! trunk organ
relationship: part_of UBERON:0002100
relationship: part_of UBERON:0002323
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002100 ! trunk
intersection_of: part_of UBERON:0002323 ! body cavity
relationship: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0002076
name: cuticle of hair
comment: This class was created automatically from a combination of ontologies
synonym: "hair cuticle" EXACT []
xref: FMA:70933
xref: MA:0000157
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001037 ! strand of hair
[Term]
id: UBERON:0002077
name: cortex of hair
def: "A cortex that is part of a hair [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "coat hair cortex" EXACT [OBOL:automatic]
synonym: "coat/hair cortex" EXACT [OBOL:automatic]
synonym: "cortex of coat hair" EXACT [OBOL:automatic]
synonym: "cortex of coat/hair" EXACT [OBOL:automatic]
synonym: "hair cortex" EXACT []
xref: FMA:70934
xref: MA:0000156
xref: SCTID:318832008
is_a: UBERON:0001851 ! cortex
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001037
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0001037 ! strand of hair
relationship: part_of UBERON:0001037 ! strand of hair
[Term]
id: UBERON:0002078
name: right atrium
def: "Right cardiac chamber which is continuous with the superior vena cava and inferior vena cava.[FMA]" [FMA:FMA, Wikipedia:Right_atrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "atrium dextrum" RELATED LATIN [Wikipedia:Right_atrium]
synonym: "cardiac right atrium" EXACT []
synonym: "heart right atrium" EXACT []
synonym: "right atrium of heart" EXACT []
synonym: "right cardiac atrium" EXACT []
xref: AAO:0010248
xref: BTO:0001703
xref: EHDAA2:0000290
xref: EMAPA:17321
xref: FMA:7096
xref: galen:RightAtrium
xref: http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000075
xref: ncithesaurus:Right_Atrium
xref: OpenCyc:Mx4runNcs6fqEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw
xref: SCTID:244383003
xref: VHOG:0000328
xref: XAO:0003192
is_a: UBERON:0002081 ! cardiac atrium
relationship: in_right_side_of UBERON:0000948
intersection_of: UBERON:0002081 ! cardiac atrium
intersection_of: in_right_side_of UBERON:0000948 ! heart
relationship: in_right_side_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002079
name: left atrium
def: "Left cardiac chamber which is continuous with the pulmonary venous trunk.[FMA]" [FMA:FMA, Wikipedia:Left_atrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "atrium sinistrum" RELATED LATIN [Wikipedia:Left_atrium]
synonym: "cardiac left atrium" EXACT []
synonym: "heart left atrium" EXACT []
synonym: "left atrium of heart" EXACT []
synonym: "left cardiac atrium" EXACT []
xref: AAO:0010247
xref: BTO:0001702
xref: EHDAA2:0000275
xref: EMAPA:17315
xref: FMA:7097
xref: galen:LeftAtrium
xref: http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000074
xref: ncithesaurus:Left_Atrium
xref: OpenCyc:Mx4rkJN1AagEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw
xref: SCTID:244387002
xref: VHOG:0000369
xref: XAO:0003191
is_a: UBERON:0002081 ! cardiac atrium
relationship: in_left_side_of UBERON:0000948
intersection_of: UBERON:0002081 ! cardiac atrium
intersection_of: in_left_side_of UBERON:0000948 ! heart
relationship: in_left_side_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002080
name: heart right ventricle
def: "Right cardiac chamber which is continuous with the pulmonary arterial trunk.[FMA]" [FMA:FMA, Wikipedia:Right_ventricle]
subset: uberon_slim
synonym: "cardiac right ventricle" EXACT []
synonym: "right ventricle" EXACT [FMA:7098]
synonym: "right ventricle of heart" EXACT []
synonym: "ventriculus dexter" RELATED LATIN [Wikipedia:Right_ventricle]
xref: BTO:0001630
xref: EHDAA2:0000196
xref: EMAPA:17340
xref: FMA:7098
xref: galen:RightVentricle
xref: http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000093
xref: ncithesaurus:Right_Ventricle
xref: OpenCyc:Mx4rRMlc0KgNEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA
xref: SCTID:244384009
xref: VHOG:0000717
is_a: UBERON:0002082 ! cardiac ventricle
relationship: in_right_side_of UBERON:0000948
intersection_of: UBERON:0002082 ! cardiac ventricle
intersection_of: in_right_side_of UBERON:0000948 ! heart
relationship: develops_from UBERON:0009889 {source="PMID:17276708"} ! secondary heart field
relationship: has_developmental_contribution_from UBERON:0004706 {source="cjm"} ! bulbus cordis
relationship: in_right_side_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002081
name: cardiac atrium
def: "Cardiac chamber which consists of a wall that surrounds the cavity of an atrium.[FMA]" [FMA:FMA, Wikipedia:Heart_atrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "atria" EXACT PLURAL []
synonym: "atrial tissue" RELATED [BTO:0000903]
synonym: "atrium" EXACT [ZFA:0000471]
synonym: "atrium of heart" EXACT []
synonym: "Cardiac atria" EXACT PLURAL []
synonym: "cardiac atria" EXACT PLURAL []
synonym: "heart atrium" EXACT []
xref: AAO:0010246
xref: BTO:0000903
xref: EFO:0000277
xref: EFO:0000314
xref: EHDAA2:0000154
xref: EHDAA:1265
xref: EMAPA:16688
xref: EV:0100019
xref: FMA:7099
xref: GAID:555
xref: galen:Atrium
xref: MA:0000073
xref: MAT:0000496
xref: MESH:A.07.541.358
xref: ncithesaurus:Cardiac_Atrium
xref: SCTID:261405004
xref: TAO:0000471
xref: VHOG:0000175
xref: ZFA:0000471
property_value: UBPROP:0000001 "One of four heart chambers.[TAO]" xsd:string
property_value: UBPROP:0000001 "One of two chambers of the heart which receive blood from the veins and forces it by muscular contration to the ventricle.[AAO]" xsd:string
is_a: UBERON:0004151 ! cardiac chamber
relationship: develops_from UBERON:0010227 ! future cardiac atrium
[Term]
id: UBERON:0002082
name: cardiac ventricle
def: "Cardiac chamber which consists of a wall that surrounds the cavity of a ventricle." [FMA:7100]
subset: uberon_slim
subset: vertebrate_core
synonym: "heart ventricle" EXACT []
synonym: "lower chamber of heart" EXACT []
synonym: "ventricle" BROAD []
synonym: "ventricle of heart" EXACT []
xref: AAO:0010249
xref: BTO:0000862
xref: EFO:0000317
xref: EHDAA2:0004164
xref: EHDAA:1912
xref: EMAPA:17331
xref: EV:0100020
xref: FMA:7100
xref: GAID:568
xref: galen:Ventricle
xref: MA:0000091
xref: MAT:0000497
xref: MESH:A.07.541.560
xref: ncithesaurus:Cardiac_Ventricle
xref: OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA
xref: SCTID:277699000
xref: TAO:0000009
xref: VHOG:0000435
xref: XAO:0003193
xref: ZFA:0000009
property_value: UBPROP:0000001 "A chamber of the heart that receives blood from one or more atria and pumps it by muscular contraction into the arteries.[AAO]" xsd:string
property_value: UBPROP:0000001 "One of four heart chambers.[TAO]" xsd:string
is_a: UBERON:0004151 ! cardiac chamber
relationship: develops_from UBERON:0010226 ! future cardiac ventricle
[Term]
id: UBERON:0002083
name: ductus venosus
def: "In the fetus, the ductus venosus shunts a significant majority (80%) of the blood flow of the umbilical vein directly to the inferior vena cava. Thus, it allows oxygenated blood from the placenta to bypass the liver. In conjunction with the other fetal shunts, the foramen ovale and ductus arteriosus, it plays a critical role in preferentially shunting oxygenated blood to the fetal brain. The ductus venosus is open at the time of the birth and is the reason why umbilical vein catheterization works. Ductus venosus naturally closes during the first week of life in most full-term neonates; however, it may take much longer to close in pre-term neonates. Functional closure occurs within minutes of birth. Structural closure in term babies occurs within 3 to 7 days. After it closes, the remnant is known as ligamentum venosum[WP]." [Wikipedia:Ductus_venosus]
comment: Editor notes: add class for fetal shunt?
subset: uberon_slim
xref: EHDAA2:0000422
xref: EHDAA:5402
xref: EMAPA:17343
xref: FMA:71007
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png
xref: MA:0002111
xref: ncithesaurus:Ductus_Venosus
xref: SCTID:304829005
xref: VHOG:0000924
is_a: UBERON:0001638 {source="EHDAA2"} ! vein
relationship: branch_of UBERON:0005459 {source="cjm"} ! left umbilical vein
relationship: develops_from UBERON:0005459 {source="EHDAA2"} ! left umbilical vein
relationship: part_of UBERON:0011695 ! embryonic cardiovascular system
[Term]
id: UBERON:0002084
name: heart left ventricle
def: "Left cardiac chamber which is continuous with the aorta.[FMA]" [FMA:FMA, Wikipedia:Left_ventricle]
subset: uberon_slim
synonym: "cardiac left ventricle" EXACT []
synonym: "left cardiac ventricle" EXACT []
synonym: "left ventricle" EXACT [FMA:7101]
synonym: "left ventricle of heart" EXACT []
synonym: "ventriculus sinister cordis" RELATED LATIN [Wikipedia:Left_ventricle]
xref: BTO:0001629
xref: EHDAA2:0002178
xref: EMAPA:17337
xref: FMA:7101
xref: galen:LeftVentricle
xref: http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000092
xref: ncithesaurus:Left_Ventricle
xref: OpenCyc:Mx4rtW8v46gEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA
xref: SCTID:244385005
xref: VHOG:0000718
is_a: UBERON:0002082 ! cardiac ventricle
relationship: in_left_side_of UBERON:0000948
intersection_of: UBERON:0002082 ! cardiac ventricle
intersection_of: in_left_side_of UBERON:0000948 ! heart
relationship: continuous_with UBERON:0000947 ! aorta
relationship: in_left_side_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002085
name: interatrial septum
def: "Cardiac septum which separates the right atrium from the left atrium.[FMA]" [FMA:FMA, Wikipedia:Interatrial_septum]
subset: uberon_slim
synonym: "atrial septum" EXACT []
synonym: "interatrial septal wall" EXACT []
xref: EHDAA2:0000838
xref: EHDAA:1896
xref: EMAPA:17011
xref: FMA:7108
xref: galen:InteratrialSeptum
xref: http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png
xref: MA:0000084
xref: ncithesaurus:Interatrial_Septum
xref: OpenCyc:Mx4rpd49nLYEEduAAAACs2IKfQ
xref: OpenCyc:Mx4rwGvku5wpEbGdrcN5Y29ycA
xref: SCTID:362016003
xref: VHOG:0000385
is_a: UBERON:0002099 ! cardiac septum
relationship: adjacent_to UBERON:0002078
relationship: adjacent_to UBERON:0002079
intersection_of: UBERON:0002099 ! cardiac septum
intersection_of: adjacent_to UBERON:0002078 ! right atrium
intersection_of: adjacent_to UBERON:0002079 ! left atrium
relationship: adjacent_to UBERON:0002078 ! right atrium
relationship: adjacent_to UBERON:0002079 ! left atrium
[Term]
id: UBERON:0002086
name: sinoatrial valve
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
xref: FMA:71120
xref: TAO:0000680
xref: ZFA:0000680
is_a: UBERON:0000946 ! cardial valve
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0002062 {source="PMID:15797462"} ! endocardial cushion
relationship: part_of UBERON:0002063 ! sinus venosus
relationship: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0002087
name: atrioventricular canal
def: "The part of the heart connecting the atrium to the cardiac ventricle[ZFA]. In the developing heart, the constriction between the atrium and ventricle constitutes the atrial canal, and indicates the site of the future atrioventricular valves[WP]." [https://github.com/cmungall/uberon/issues/38, Wikipedia:Atrioventricular_canal, ZFA:0001315]
comment: AO notes - this is a lumen in EHDAA2
subset: uberon_slim
subset: vertebrate_core
synonym: "atrial canal" EXACT [Wikipedia:Atrial_canal]
synonym: "AV canal" EXACT []
synonym: "canalis atrioventricularis" RELATED LATIN [Wikipedia:Atrioventricular_canal]
xref: EHDAA2:0000152
xref: EHDAA:764
xref: EMAPA:16546
xref: FMA:71121
xref: http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray464.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d8/Gray464.png/200px-Gray464.png
xref: SCTID:341079007
xref: TAO:0001315
xref: VHOG:0001473
xref: XAO:0004123
xref: ZFA:0001315
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: connects UBERON:0002081 ! cardiac atrium
relationship: connects UBERON:0002082 ! cardiac ventricle
relationship: develops_from UBERON:0007279 {evidence="definitional", source="ZFA"} ! presumptive atrioventricular canal
relationship: part_of UBERON:0000948 {source="ZFA"} ! heart
[Term]
id: UBERON:0002088
name: lateral thoracic vein
def: "The lateral thoracic vein is a tributary of the axillary vein. It runs with the lateral thoracic artery and drains the Serratus anterior muscle and the Pectoralis major muscle. Normally, the thoracoepigastric vein exists between this vein and superficial epigastric vein (a tributary of femoral vein), to act as a shunt for blood if the portal system (through the liver) develops hypertension or a blockage. [WP,unvetted]." [Wikipedia:Lateral_thoracic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vena thoracica lateralis" RELATED LATIN [Wikipedia:Lateral_thoracic_vein]
xref: FMA:71210
xref: http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png
xref: MA:0002162
xref: SCTID:53595001
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
[Term]
id: UBERON:0002089
name: thoracodorsal vein
comment: This class was created automatically from a combination of ontologies
xref: FMA:71213
xref: MA:0002238
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
[Term]
id: UBERON:0002090
name: postcranial axial skeleton
def: "The post-cranial subdivision of skeleton structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins; in human consists of the bones of the vertebral column, the thoracic cage and the pelvis[ZFA+FMA]." [https://sourceforge.net/tracker/?func=detail&aid=2983975&group_id=76834&atid=974957, https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=2983977&group_id=76834, ZFA:0000317]
comment: previous some AOs had used the term 'axial skeleton' to include the skull. This is being resolved (see tracker items above). Status: MA - fixed.
subset: uberon_slim
subset: vertebrate_core
synonym: "axial skeleton" BROAD [MA:0000308]
synonym: "post-cranial axial skeleton" EXACT []
xref: AAO:0000034
xref: EHDAA2:0000161
xref: EHDAA:5049
xref: EMAPA:17214
xref: EMAPA:18043
xref: MA:0002986
xref: MAT:0000148
xref: MIAA:0000148
xref: TAO:0000317
xref: VHOG:0000317
xref: VSAO:0000093
xref: XAO:0003073
xref: ZFA:0000317
property_value: UBPROP:0000001 "Skeletal subdivision of the central body axis including vertebrae, notochord, ribs, and sternum.[VSAO]" xsd:string
property_value: UBPROP:0000001 "The axial skeleton is formed by the vertebral column, a metameric, semi-flexible, arched bar located in the dorsal part of the trunk, and is formed by a series of cartilaginous or bony vertebrae. It provides suspension for the appendicular skeleton and protection for the spinal nerve cord.[AAO]" xsd:string
property_value: UBPROP:0000001 "The post-cranial structural components forming the long axis of the vertebrate body; usually consists of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins.[TAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: develops_from UBERON:0003089 ! sclerotome
relationship: part_of UBERON:0005944 ! axial skeleton
relationship: part_of UBERON:0011138 ! post-cranial axial skeletal system
[Term]
id: UBERON:0002091
name: entire appendicular skeleton
def: "Subdivision of skeleton which which consists of all the skeletal elements in in the pectoral and pelvic appendage complexes[cjm]." [UBERON:cjm, UBERONREF:0000003, Wikipedia:Appendicular_skeleton]
comment: Note that ontologies differ in whether they treat the term appendicular skeleton as being the entire set of bones in the limbs, or whether the fore and hind limbs/fins are treated as seperate appendicular skeletons. Here we follow FMA, and treat the appendicular skeleton as the sum total of skeletal elements in the organism (this is evidenced by the fact that in FMA, skeleton of left/right upper/lower limb is part_of a appendicular skeleton, and subtypes of 'subdivision of appendicular skeleton'). We have separate classes such as 'skeleton of limb', and 'skeleton of hindlimb' for the 4 parts of the appendicular skeleton. In future the ZFA/TAO classes may be moved.
subset: uberon_slim
subset: vertebrate_core
synonym: "appendicular skeleton" EXACT []
synonym: "paired fin skeleton" NARROW SENSU []
synonym: "skeleton appendiculare" RELATED LATIN [Wikipedia:Appendicular_skeleton]
xref: AAO:0000747
xref: EFO:0000951
xref: FMA:71222
xref: http://upload.wikimedia.org/wikipedia/commons/7/7c/Appendicular_skeleton_diagram.svg
xref: MA:0000290
xref: MAT:0000278
xref: MIAA:0000278
xref: ncithesaurus:Appendicular_Skeleton
xref: SCTID:322050006
xref: TAO:0000027
xref: VHOG:0001666
xref: VSAO:0000076
xref: XAO:0003166
xref: ZFA:0000027
property_value: UBPROP:0000001 "Skeletal subdivision consisting of all the skeletal elements in the pectoral and pelvic appendage complexes.[VSAO]" xsd:string
property_value: UBPROP:0000001 "Skeletal system that consists of the paired fins (pectoral or pelvic fins).[TAO]" xsd:string
property_value: UBPROP:0000001 "The pectoral and pelvic girdles, which articulate with the axial skeleton, together with their associated limbs, the forelimbs and hind limbs, form the appendicular skeleton.[AAO]" xsd:string
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: overlaps UBERON:0000026 ! appendage
relationship: part_of UBERON:0011249 ! appendicular skeletal system
[Term]
id: UBERON:0002092
name: brain dura mater
def: "the fibrous membrane forming the outer of the three coverings that surrounds the brain within the cranial cavity; consists of two layers including the periosteal layer and the meningeal layer." [MP:0009025]
synonym: "cranial dura mater" EXACT [FMA:71236]
synonym: "dura mater encephali" EXACT []
synonym: "dura mater of brain" EXACT []
xref: EMAPA:17766
xref: EMAPA:17785
xref: EMAPA:17793
xref: EV:0100313
xref: FMA:71236
xref: MA:0000815
xref: ncithesaurus:Cerebral_Dura_Mater
xref: SCTID:309321003
xref: VHOG:0000270
is_a: UBERON:0002363 ! dura mater
is_a: UBERON:0003547 ! brain meninx
relationship: part_of UBERON:0000955
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002093
name: spinal dura mater
def: "A dura mater that is part of a spinal cord [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
synonym: "dura mater of neuraxis of spinal cord" EXACT [OBOL:automatic]
synonym: "dura mater of spinal cord" EXACT []
synonym: "spinal cord dura mater" EXACT []
synonym: "spinal cord dura mater of neuraxis" EXACT [OBOL:automatic]
xref: EMAPA:17806
xref: FMA:71237
xref: MA:0001132
xref: ncithesaurus:Spinal_Cord_Dura_Mater
xref: SCTID:362302001
xref: VHOG:0000411
is_a: UBERON:0002363 ! dura mater
is_a: UBERON:0003292 ! meninx of spinal cord
relationship: part_of UBERON:0002240
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002094
name: interventricular septum
def: "Cardiac septum which separates the right ventricle from the left ventricle.[FMA]" [FMA:FMA, Wikipedia:Interventricular_septum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "heart interventricular septum" EXACT [MA:0000085]
synonym: "heart ventricular septum" EXACT [MA:0000085]
synonym: "interventricular septum of heart" RELATED [BTO:0002483]
synonym: "interventriculare cordis" RELATED [BTO:0002483]
synonym: "s. interventriculare cordis" RELATED LATIN [Wikipedia:Interventricular_septum]
synonym: "ventricular septum" RELATED [MA:0000085]
xref: BTO:0002483
xref: EFO:0001956
xref: EHDAA2:0000885
xref: EHDAA:2603
xref: EMAPA:17333
xref: FMA:7133
xref: galen:InterventricularSeptum
xref: http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray498.png/200px-Gray498.png
xref: MA:0000085
xref: ncithesaurus:Interventricular_Septum
xref: OpenCyc:Mx4rwA7lp5wpEbGdrcN5Y29ycA
xref: SCTID:362019005
xref: VHOG:0000386
is_a: UBERON:0002099 ! cardiac septum
relationship: adjacent_to UBERON:0002080
relationship: adjacent_to UBERON:0002084
intersection_of: UBERON:0002099 ! cardiac septum
intersection_of: adjacent_to UBERON:0002080 ! heart right ventricle
intersection_of: adjacent_to UBERON:0002084 ! heart left ventricle
relationship: adjacent_to UBERON:0002080 ! heart right ventricle
relationship: adjacent_to UBERON:0002084 ! heart left ventricle
[Term]
id: UBERON:0002095
name: mesentery
def: "Anatomical organ component composed of a double layer of serous membrane that suspends a viscus from the body wall or connects adjacent viscera and in doing so conveys blood vessels, lymphatics and nerves to and from the viscera. Examples: greater omentum, broad ligament of uterus, sigmoid mesocolon." [FMA:7144, Wikipedia:Mesentery, Wikipedia:Mesentery#Mesentery_.28general.29]
comment: Note that in Uberon, this term is used in the generic sense, not necessarily restricted to the peritoneum, consistent with FMA. WP: "In anatomy, the mesentery is the double layer of peritoneum that suspends the jejunum and ileum from the posterior wall of the abdomen. Its meaning, however, is frequently extended to include double layers of peritoneum connecting various components of the abdominal cavity.". TODO - check. Consider FMA:259286 - Region of mesentery.
subset: uberon_slim
subset: vertebrate_core
synonym: "generic mesentery" EXACT [Wikipedia:Mesentery]
synonym: "mesentery (generic)" EXACT [Wikipedia:Mesentery]
xref: AAO:0011061
xref: BTO:0001380
xref: EV:0100083
xref: FMA:7144
xref: GAID:21
xref: galen:Mesentery
xref: http://upload.wikimedia.org/wikipedia/commons/1/19/Gray1038.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray1038.png/200px-Gray1038.png
xref: MESH:A.01.047.025.600.451
xref: ncithesaurus:Mesentery
xref: SCTID:362707009
is_a: UBERON:0000042 ! serous membrane
relationship: develops_from UBERON:0002296 {evidence="definitional"} ! dorsal mesentery
[Term]
id: UBERON:0002097
name: skin of body
def: "Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin[FMA]. Surface structure that consists of the external membranous integument of the animal." [FMA:7163, OMD:skin, Wikipedia:Skin]
comment: Note that FMA uses 'skin' for the entire organ. XAO seems consistent. MA seems to use it analagously to zone of skin
subset: major_organ
subset: uberon_slim
synonym: "entire skin" EXACT []
synonym: "integument" RELATED []
synonym: "pelt" RELATED []
synonym: "skin" RELATED []
xref: BTO:0001253
xref: EFO:0000962
xref: EHDAA2:0001844
xref: EMAPA:17525
xref: FMA:7163
xref: galen:Skin
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png
xref: MESH:A.17.815
xref: ncithesaurus:Skin
xref: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA
xref: SCTID:181469002
xref: XAO:0000023
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! skin basal layer
relationship: has_part UBERON:0000014 ! zone of skin
relationship: has_part UBERON:0001003 ! epidermis
relationship: has_part UBERON:0002067 ! dermis
relationship: part_of UBERON:0002199 ! integument
[Term]
id: UBERON:0002098
name: apex of heart
def: "The apex of the heart is the lowest superficial part of the heart. It is directed downward, forward, and to the left, and is overlapped by the left lung and pleura. [WP,unvetted]." [Wikipedia:Apex_of_the_heart]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cardiac apex" EXACT []
synonym: "heart apex" EXACT []
xref: FMA:7164
xref: http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png
xref: MA:0000488
xref: ncithesaurus:Apex_of_the_Heart
xref: SCTID:362009004
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002099
name: cardiac septum
def: "The thin membranous structure between the two heart atria or the thick muscular structure between the two heart ventricles." [MESH:A.07.541.459]
comment: Note in GO, septum morphogenesis is part of cardiac chamber morphogenesis; need to add axioms to infer this. Taxon notes: "Terrestrial vertebrates have divided hearts in which septae separate the oxygenated and deoxygenated blood within the pulmonary and systemic circulations"
subset: uberon_slim
synonym: "cardiac septa" EXACT PLURAL []
synonym: "heart septa" EXACT PLURAL []
synonym: "heart septum" EXACT []
synonym: "septum of heart" EXACT []
xref: FMA:7180
xref: GAID:562
xref: MA:0000083
xref: MESH:A.07.541.459
xref: ncithesaurus:Heart_Septum
xref: SCTID:362014000
xref: XAO:0004141
is_a: UBERON:0003037 ! septum
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948
intersection_of: UBERON:0003037 ! septum
intersection_of: part_of UBERON:0000948 ! heart
relationship: adjacent_to UBERON:0004151 ! cardiac chamber
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002100
name: trunk
def: "Organism subdivision which is the part of the body posterior to the cervical region (or head, when cervical region not present) and anterior to the caudal region. Includes the sacrum when present." [TAO:0001115, UBERONREF:0000006, Wikipedia:Torso]
comment: editor note - check AAO
subset: uberon_slim
subset: vertebrate_core
synonym: "Rumpf" RELATED [BTO:0001493]
synonym: "thoracolumbar region" EXACT []
synonym: "torso" EXACT []
synonym: "trunk region" EXACT [XAO:0000054]
xref: AAO:0010339
xref: BILA:0000116
xref: BTO:0001493
xref: EFO:0000966
xref: FMA:7181
xref: galen:Trunk
xref: MA:0000004
xref: MAT:0000296
xref: MIAA:0000296
xref: ncithesaurus:Trunk
xref: OpenCyc:Mx4rvVkJjpwpEbGdrcN5Y29ycA
xref: SCTID:262225004
xref: TAO:0001115
xref: XAO:0000054
xref: XAO:0003025
xref: ZFA:0001115
property_value: "spatially_disjoint_from" UBERON:0000026
property_value: "spatially_disjoint_from" UBERON:0000033
property_value: UBPROP:0000001 "Organism subdivision that is the part of the body posterior to the head and anterior to the tail.[AAO]" xsd:string
property_value: UBPROP:0000001 "Organism subdivision which is the part of the body posterior to the head and anterior to the tail.[TAO]" xsd:string
is_a: UBERON:0011676 ! axial subdivision of organism
disjoint_from: UBERON:0002464 ! nerve trunk
relationship: has_part UBERON:0000915 ! thoracic segment of trunk
relationship: has_part UBERON:0000916 ! abdomen
[Term]
id: UBERON:0002101
name: limb
def: "A paired appendage that is evolved from a paired fin. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the girdle and its parts." [UBERONREF:0000003, Wikipedia:Limb]
subset: uberon_slim
synonym: "flipper" NARROW SENSU []
synonym: "free limb" EXACT [FMA:24875]
synonym: "limb sensu vertebrata" EXACT [MAT:0000090]
synonym: "tetrapod limb" EXACT []
xref: AAO:0010336
xref: EFO:0000876
xref: EHDAA2:0003172
xref: EHDAA:1697
xref: EHDAA:8273
xref: EMAPA:16405
xref: FMA:24875
xref: GAID:36
xref: galen:Extremity
xref: MA:0000007
xref: MAT:0000090
xref: MIAA:0000090
xref: ncithesaurus:Limb
xref: OpenCyc:Mx4rvn1uSZwpEbGdrcN5Y29ycA
xref: SCTID:243996003
xref: VHOG:0000336
xref: VSAO:0000121
xref: XAO:0003027
property_value: UBPROP:0000001 "Organism subdivision that has as its parts the jointed appendages used for locomotion and manipulation.[AAO]" xsd:string
is_a: UBERON:0004708 ! limb/fin
relationship: develops_from UBERON:0004347 ! limb bud
[Term]
id: UBERON:0002102
name: forelimb
def: "A (free) limb that is connected to a pectoral girdle. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pectoral girdle and its parts." [UBERONREF:0000003, Wikipedia:Forelimb]
comment: AO notes: note that this corresponds to FMA:'free upper limb' (a limb segment), NOT 'upper limb'. Both MA and FMA consider shoulder (and shoulder bones) part of upper limb. Usage notes: Note distinction between arm and forelimb. hand is part of forelimb, but not part of arm
subset: uberon_slim
synonym: "anteriormost limb" EXACT []
synonym: "fore limb" EXACT []
synonym: "foreleg" RELATED []
synonym: "forelimb" EXACT []
synonym: "free part of upper limb" EXACT [FMA:24878]
synonym: "free upper limb" EXACT [FMA:24878, UBERONREF:0000003]
synonym: "membrum superius" EXACT [FMA:7183, FMA:TA]
synonym: "pectoral limb" EXACT []
synonym: "superior member" EXACT []
synonym: "upper extremity" EXACT []
synonym: "upper limb" EXACT []
xref: AAO:0000205
xref: BTO:0001729
xref: EFO:0000882
xref: EHDAA2:0002133
xref: EHDAA:6208
xref: EMAPA:17412
xref: EV:0100014
xref: FMA:24878
xref: GAID:1215
xref: GAID:51
xref: galen:UpperExtremity
xref: MA:0000025
xref: MAT:0000394
xref: MESH:A.13.395
xref: MIAA:0000394
xref: ncithesaurus:Upper_Extremity
xref: SCTID:182245002
xref: VHOG:0000338
xref: VSAO:0000148
xref: XAO:0003030
property_value: UBPROP:0000001 "Upper limb, which connects the manus with the pectoral girdle.[AAO]" xsd:string
is_a: UBERON:0002101 ! limb
is_a: UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0010708
intersection_of: UBERON:0002101 ! limb
intersection_of: part_of UBERON:0010708 ! pectoral complex
relationship: anterior_to UBERON:0002103 ! hindlimb
relationship: connected_to UBERON:0001421 ! pectoral girdle region
relationship: develops_from UBERON:0005417 ! forelimb bud
relationship: part_of UBERON:0000153 ! anterior region of body
relationship: part_of UBERON:0010708 ! pectoral complex
[Term]
id: UBERON:0002103
name: hindlimb
def: "A (free) limb that is connected to a pelvic girdle region. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pelvic girdle and its parts." [UBERONREF:0000003, Wikipedia:Lower_limb]
comment: AO notes: note that this corresponds to FMA:'free lower limb' (a limb segment), NOT 'lower limb'. Both MA and FMA consider shoulder (and shoulder bones) part of upper limb. Note that AAO class probably refers to skeleton
subset: uberon_slim
synonym: "free lower limb" EXACT [FMA:24879, UBERONREF:0000003]
synonym: "hind limb" EXACT []
synonym: "hindlimb" EXACT []
synonym: "inferior member" EXACT []
synonym: "lower extremity" RELATED []
synonym: "lower limb" EXACT []
synonym: "membrum inferius" EXACT [FMA:7184, FMA:TA]
synonym: "membrum inferius" RELATED LATIN [Wikipedia:Lower_limb]
synonym: "pelvic appendage" RELATED []
xref: AAO:0000219
xref: BTO:0002345
xref: EFO:0000883
xref: EHDAA2:0001033
xref: EHDAA:6094
xref: EMAPA:17458
xref: EV:0100015
xref: FMA:24879
xref: GAID:1221
xref: GAID:38
xref: galen:LowerExtremity
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray1239.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray1239.png/200px-Gray1239.png
xref: MA:0000026
xref: MAT:0000395
xref: MESH:A.13.473
xref: MIAA:0000395
xref: ncithesaurus:Hind_Limb
xref: ncithesaurus:Lower_Extremity
xref: SCTID:182281004
xref: VHOG:0000337
xref: VSAO:0000150
xref: XAO:0003031
property_value: UBPROP:0000001 "Lower limb, which connects the pes with the pelvic girdle.[AAO]" xsd:string
is_a: UBERON:0002101 ! limb
is_a: UBERON:0004709 ! pelvic appendage
relationship: part_of UBERON:0010709
intersection_of: UBERON:0002101 ! limb
intersection_of: part_of UBERON:0010709 ! pelvic complex
relationship: connected_to UBERON:0001271 ! pelvic girdle region
relationship: develops_from UBERON:0005418 ! hindlimb bud
relationship: part_of UBERON:0000154 ! posterior region of body
relationship: part_of UBERON:0010709 ! pelvic complex
[Term]
id: UBERON:0002104
name: visual system
def: "." [Wikipedia:Visual_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "visual organ system" EXACT []
xref: AAO:0000632
xref: FMA:7191
xref: MA:0002444
xref: ncithesaurus:Visual_System
xref: NIF_GrossAnatomy:FMAID_7191
xref: OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA
xref: SCTID:281831001
xref: TAO:0001127
xref: XAO:0003198
xref: ZFA:0001127
property_value: "spatially_disjoint_from" UBERON:0002105
property_value: UBPROP:0000001 "The sensory system used for sight.[AAO]" xsd:string
is_a: UBERON:0001032 ! sensory system
[Term]
id: UBERON:0002105
name: vestibulo-auditory system
def: "A sensory system for the sense of hearing[WP]." [Wikipedia:Auditory_system]
comment: Auditory system is general anatomical term in FMA
subset: functional_classification
subset: uberon_slim
subset: vertebrate_core
synonym: "auditory organ system" EXACT []
synonym: "auditory system" RELATED []
synonym: "auditory/vestibular system" RELATED []
synonym: "vestibuloauditory system" EXACT []
synonym: "vestibuloauditory system" RELATED []
xref: AAO:0000631
xref: FMA:7192
xref: FMA:78500
xref: http://upload.wikimedia.org/wikipedia/commons/d/d2/Anatomy_of_the_Human_Ear.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/HumanEar.jpg/200px-HumanEar.jpg
xref: MA:0002443
xref: ncithesaurus:Auditory_System
xref: NIF_GrossAnatomy:nlx_anat_090817
xref: OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA
xref: TAO:0001138
xref: XAO:0003195
xref: ZFA:0001138
property_value: UBPROP:0000001 "The sensory system used for balance and hearing.[AAO]" xsd:string
is_a: UBERON:0001032 ! sensory system
[Term]
id: UBERON:0002106
name: spleen
def: "Organ found in virtually all vertebrate animals with important roles in regard to red blood cells and the immune system.[1] In humans, it is located in the left upper quadrant of the abdomen. It removes old red blood cells and holds a reserve in case of hemorrhagic shock, especially in animals like horses (not in humans), while recycling iron.[2] It synthesizes antibodies in its white pulp and removes, from blood and lymph node circulation, antibody-coated bacteria along with antibody-coated blood cells." [Wikipedia:Spleen]
comment: Taxon notes: Neither hagfish nor lampreys possess what might be considered a discrete and condensed spleen. Hagfish possess dispersed lymphoid tissue within the submucosa of the intestine (96) associated with the portal vein (97), whereas lymphoid tissue is associated with the typhlosole portion of the intestine in lampreys (96) [PMID:20959416]
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "splen, lien" RELATED LATIN [Wikipedia:Spleen]
xref: AAO:0010395
xref: BTO:0001281
xref: EFO:0000869
xref: EMAPA:18767
xref: EV:0100055
xref: FMA:7196
xref: GAID:1289
xref: galen:Spleen
xref: http://upload.wikimedia.org/wikipedia/commons/d/d6/Illu_spleen.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d6/Illu_spleen.jpg/200px-Illu_spleen.jpg
xref: MA:0000141
xref: MAT:0000085
xref: MESH:A.15.382.520.604.713
xref: MIAA:0000085
xref: ncithesaurus:Spleen
xref: OpenCyc:Mx4rvVjgw5wpEbGdrcN5Y29ycA
xref: SCTID:181279003
xref: TAO:0000436
xref: VHOG:0000120
xref: XAO:0000328
xref: ZFA:0000436
property_value: UBPROP:0000001 "An organ involved in red blood cell filtration and immune response.[AAO]" xsd:string
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0004177 ! hemopoietic organ
is_a: UBERON:0005057 ! immune organ
is_a: UBERON:0005172 ! abdomen organ
relationship: develops_from UBERON:0006293 ! spleen primordium
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0002323 ! body cavity
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0002107
name: liver
def: "An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO]." [BTO:0000759, Wikipedia:Liver]
comment: AO notes: Only ZFA considers this part_of immune system - we weaken this to an overlaps relation, as in general it's only a subset of cells that have clear immune function. Taxon notes: WP: The liver is found in all vertebrates, and is typically the largest visceral organ. Its form varies considerably in different species, and is largely determined by the shape and arrangement of the surrounding organs. Nonetheless, in most species it is divided into right and left lobes; exceptions to this general rule include snakes, where the shape of the body necessitates a simple cigar-like form. The internal structure of the liver is broadly similar in all vertebrates.[7] An organ sometimes referred to as a liver is found associated with the digestive tract of the primitive chordate Amphioxus. However, this is an enzyme secreting gland, not a metabolic organ, and it is unclear how truly homologous it is to the vertebrate liver.
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "jecur, iecer" RELATED LATIN [Wikipedia:Liver]
xref: AAO:0010111
xref: BTO:0000759
xref: EFO:0000887
xref: EHDAA2:0000997
xref: EHDAA:2197
xref: EMAPA:16846
xref: EV:0100089
xref: FMA:7197
xref: GAID:288
xref: galen:Liver
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Leber_Schaf.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Leber_Schaf.jpg/200px-Leber_Schaf.jpg
xref: MA:0000358
xref: MAT:0000097
xref: MESH:A.03.620
xref: MIAA:0000097
xref: ncithesaurus:Liver
xref: OpenCyc:Mx4rvVimppwpEbGdrcN5Y29ycA
xref: SCTID:181268008
xref: TAO:0000123
xref: VHOG:0000257
xref: XAO:0000133
xref: ZFA:0000123
property_value: UBPROP:0000001 "Organ which secretes bile and participates in formation of certain blood proteins.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: differentiates_from endoderm (AAO:0000139) CHANGED TO: develops_from endoderm (UBERON:0000925)[AAO]" xsd:string
is_a: UBERON:0002365 ! exocrine gland
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005172 ! abdomen organ
is_a: UBERON:0006925 ! digestive gland
disjoint_from: UBERON:0010264 ! hepatopancreas
relationship: develops_from UBERON:0003894 {evidence="definitional"} ! liver primordium
relationship: develops_from UBERON:0004161 {source="EHDAA2"} ! septum transversum
relationship: develops_from UBERON:0008836 {source="http://www.stembook.org/node/512"} ! liver bud
relationship: overlaps UBERON:0002405 {source="ZFA-weakened"} ! immune system
relationship: part_of UBERON:0000916 {source="FMA"} ! abdomen
relationship: part_of UBERON:0000949 {source="EHDAA2"} ! endocrine system
relationship: part_of UBERON:0001007 {source="ZFA"} ! digestive system
relationship: part_of UBERON:0002330 {source="EHDAA2"} ! exocrine system
relationship: part_of UBERON:0002423 {source="ZFA"} ! hepatobiliary system
[Term]
id: UBERON:0002108
name: small intestine
def: "Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine[FMA]. The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005." [FMA:7200, WA:dh, Wikipedia:Small_intestine, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior intestine" RELATED []
synonym: "intestinum tenue" RELATED [BTO:0000651]
synonym: "intestinum tenue" RELATED LATIN [Wikipedia:Small_intestine]
synonym: "mid intestine" RELATED []
synonym: "small bowel" EXACT []
synonym: "small intestine" EXACT []
xref: AAO:0010397
xref: BTO:0000651
xref: EFO:0000841
xref: EV:0100072
xref: FMA:7200
xref: GAID:313
xref: galen:SmallIntestine
xref: http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Stomach_colon_rectum_diagram.svg/200px-Stomach_colon_rectum_diagram.svg.png
xref: MA:0000337
xref: MAT:0000047
xref: MESH:A.03.492.411.620
xref: MIAA:0000047
xref: ncithesaurus:Small_Intestine
xref: OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA
xref: SCTID:181250005
xref: TAO:0001323
xref: VHOG:0000055
xref: XAO:0000130
xref: ZFA:0001323
property_value: UBPROP:0000001 "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005.[TAO]" xsd:string
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000160 ! intestine
[Term]
id: UBERON:0002109
name: pair of nares
def: "Pair of nostrils." [Wikipedia:Nares]
comment: Note this is a "set of anatomical planes" in FMA
subset: uberon_slim
synonym: "nares" RELATED []
synonym: "nares set" EXACT []
synonym: "nostrils" EXACT []
synonym: "pair of nostrils" EXACT []
xref: FMA:72005
xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA
property_value: RO:0002161 NCBITaxon:7745
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000004 ! olfactory apparatus
[Term]
id: UBERON:0002110
name: gallbladder
def: "a small organ that aids digestion and stores bile produced by the liver[WP]. Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder[FMA]." [FMA:7202, Wikipedia:Gallbladder]
comment: Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988)
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "gall bladder" EXACT []
synonym: "vesica fellea; vesica biliaris" RELATED LATIN [Wikipedia:Gallbladder]
xref: AAO:0010114
xref: BTO:0000493
xref: EFO:0000853
xref: EHDAA2:0000699
xref: EHDAA:8062
xref: EMAPA:17202
xref: EV:0100090
xref: FMA:7202
xref: galen:Gallbladder
xref: http://upload.wikimedia.org/wikipedia/commons/3/3f/Illu_pancrease.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Abdomal_organs.svg/200px-Abdomal_organs.svg.png
xref: MA:0000356
xref: MAT:0000072
xref: MESH:A.03.159.439
xref: MIAA:0000072
xref: ncithesaurus:Gallbladder
xref: OpenCyc:Mx4rvVkGr5wpEbGdrcN5Y29ycA
xref: SCTID:181269000
xref: TAO:0000208
xref: VHOG:0000221
xref: XAO:0000135
xref: ZFA:0000208
property_value: RO:0002161 NCBITaxon:10114
property_value: UBPROP:0000001 "Organ attached to the liver which stores bile and empties into the duodenum via the bile duct as needed for digestion.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: differentiates_from endoderm (AAO:0000139) CHANGED TO: develops_from endoderm (UBERON:0000925)[AAO]" xsd:string
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005172 ! abdomen organ
relationship: develops_from UBERON:0004912 ! biliary bud
relationship: develops_from UBERON:0006242 {evidence="definitional"} ! gall bladder primordium
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0001173 ! biliary tree
relationship: part_of UBERON:0002294 ! biliary system
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0002111
name: artery smooth muscle tissue
def: "A portion of smooth muscle tissue that is part of an artery [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "arterial smooth muscle" EXACT [BTO:0000087]
synonym: "artery smooth muscle" EXACT []
synonym: "artery smooth muscle tissue" EXACT []
synonym: "smooth muscle of artery" EXACT [FMA:72024]
xref: BTO:0000087
xref: FMA:72024
xref: MA:0000708
xref: ncithesaurus:Artery_Smooth_Muscle_Tissue
is_a: UBERON:0004237 ! blood vessel smooth muscle
is_a: UBERON:0004695 ! arterial system smooth muscle
relationship: part_of UBERON:0001637
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001637 ! artery
relationship: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0002112
name: smooth muscle of esophagus
def: "A portion of smooth muscle tissue that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "esophagus involuntary muscle" EXACT [OBOL:automatic]
synonym: "esophagus non-striated muscle" EXACT [OBOL:automatic]
synonym: "esophagus smooth muscle" EXACT []
synonym: "esophagus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "gullet involuntary muscle" EXACT [OBOL:automatic]
synonym: "gullet non-striated muscle" EXACT [OBOL:automatic]
synonym: "gullet smooth muscle" EXACT [OBOL:automatic]
synonym: "gullet smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of esophagus" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gullet" EXACT [OBOL:automatic]
synonym: "involuntary muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of esophagus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gullet" EXACT [OBOL:automatic]
synonym: "non-striated muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "oesophagus involuntary muscle" EXACT [OBOL:automatic]
synonym: "oesophagus non-striated muscle" EXACT [OBOL:automatic]
synonym: "oesophagus smooth muscle" RELATED []
synonym: "oesophagus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of gullet" EXACT [OBOL:automatic]
synonym: "smooth muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of esophagus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gullet" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of oesophagus" EXACT [OBOL:automatic]
xref: FMA:72025
xref: MA:0001573
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0001043
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0003832 ! esophagus muscle
[Term]
id: UBERON:0002113
name: kidney
def: "A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney]
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "kidney" EXACT []
xref: AAO:0000250
xref: BTO:0000671
xref: EFO:0000929
xref: EV:0100096
xref: FMA:7203
xref: GAID:423
xref: galen:Kidney
xref: MA:0000368
xref: MAT:0000119
xref: MESH:A.05.810.453
xref: MIAA:0000119
xref: ncithesaurus:Kidney
xref: OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA
xref: SCTID:181414000
xref: TAO:0000529
xref: XAO:0003267
property_value: "spatially_disjoint_from" UBERON:0000160
property_value: UBPROP:0000001 "One of either of a pair of structures lying on either side of the dorsal aorta in which fluid balance is regulated and waste is excreted out in the form of urine.[AAO]" xsd:string
is_a: UBERON:0000489 ! cavitated compound organ
is_a: UBERON:0005172 ! abdomen organ
is_a: UBERON:0006554 ! urinary system structure
relationship: develops_from UBERON:0003918 {evidence="definitional"} ! kidney mesenchyme
relationship: develops_from UBERON:0005095 ! kidney rudiment
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0011143 {source="FMA"} ! upper urinary tract
[Term]
id: UBERON:0002114
name: duodenum
def: "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "proximal intestine" RELATED [BTO:0000365]
synonym: "upper intestine" RELATED [BTO:0000365]
xref: AAO:0010402
xref: BTO:0000365
xref: EFO:0000851
xref: EHDAA:3830
xref: EHDAA:3937
xref: EMAPA:17178
xref: EMAPA:17193
xref: EMAPA:18661
xref: EMAPA:18852
xref: EV:0100073
xref: FMA:7206
xref: GAID:284
xref: galen:Duodenum
xref: http://upload.wikimedia.org/wikipedia/commons/b/b3/Tractus_intestinalis_duodenum.svg
xref: MA:0000338
xref: MAT:0000044
xref: MESH:A.03.492.411.620.270
xref: MIAA:0000044
xref: ncithesaurus:Duodenum
xref: OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA
xref: SCTID:181247007
xref: VHOG:0000052
xref: XAO:0000236
property_value: "dubious_for_taxon" NCBITaxon:7955
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0002115
name: jejunum
def: "The jejunum is the middle section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms middle intestine or mid-gut may be used instead of jejunum. [WP,unvetted]." [Wikipedia:Jejunum]
comment: TODO consider ZFA:0001323 mid intestine, see also small intestine
subset: uberon_slim
synonym: "intestinum jejunum" RELATED [BTO:0000657]
synonym: "middle intestine" RELATED [BTO:0000657]
xref: BTO:0000657
xref: EFO:0001333
xref: EMAPA:18666
xref: EMAPA:18932
xref: EV:0100074
xref: FMA:7207
xref: GAID:318
xref: galen:Jejunum
xref: http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg
xref: MA:0000340
xref: MAT:0000045
xref: MESH:A.03.492.411.620.625
xref: MIAA:0000045
xref: ncithesaurus:Jejunum
xref: OpenCyc:Mx4rwATkPJwpEbGdrcN5Y29ycA
xref: SCTID:181248002
xref: VHOG:0000053
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0002116
name: ileum
def: "The ileum is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may be used instead of ileum. [WP,unvetted]." [Wikipedia:Ileum]
comment: TODO consider ZFA:0000706 posterior intestine, see also colon
subset: uberon_slim
synonym: "distal intestine" RELATED [BTO:0000620]
synonym: "intestinum ileum" RELATED [BTO:0000620]
synonym: "lower intestine" RELATED [BTO:0000620]
xref: AAO:0010403
xref: BTO:0000620
xref: EFO:0001334
xref: EV:0100075
xref: FMA:7208
xref: GAID:315
xref: galen:Ileum
xref: http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg
xref: MA:0000339
xref: MAT:0000282
xref: MESH:A.03.492.411.620.484
xref: MIAA:0000282
xref: ncithesaurus:Ileum
xref: OpenCyc:Mx4rvdcLHZwpEbGdrcN5Y29ycA
xref: SCTID:181249005
xref: VHOG:0000647
xref: XAO:0000237
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0002118
name: right ovary
def: "An ovary that is part of a right side of organism [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
xref: FMA:7213
xref: MA:0001705
xref: ncithesaurus:Right_Ovary
xref: SCTID:280123002
is_a: UBERON:0000992 ! female gonad
relationship: in_right_side_of UBERON:0000468
intersection_of: UBERON:0000992 ! female gonad
intersection_of: in_right_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_right_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0002119
name: left ovary
def: "An ovary that is part of a left side of organism [Obol]." [OBOL:automatic]
comment: Taxon notes: In some elasmobranchs, the left ovary does not mature, with only the right ovary fully developing. In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo[Wikipedia:Ovary#In_other_animals]
xref: FMA:7214
xref: MA:0001704
xref: ncithesaurus:Left_Ovary
xref: SCTID:280124008
is_a: UBERON:0000992 ! female gonad
relationship: in_left_side_of UBERON:0000468
intersection_of: UBERON:0000992 ! female gonad
intersection_of: in_left_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0002120
name: pronephros
alt_id: UBERON:0005794
def: "In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensible for larval life[GO]." [GO:0048793, Wikipedia:Pronephros]
comment: Once the more complex mesonephros forms the pronephros undergoes apoptosis in amphibians. In fishes the nephron degenerates but the organ remains and becomes a component of the immune system[Wikipedia:Pronephros]. // TODO - check developmental relationships. Note that we previously include the ZFA/XAO terms under the more specific 'pronephric kidney', but these are now merged. TODO GCI: relationship: capable_of GO:0030104
subset: organ_slim
subset: uberon_slim
synonym: "archinephron" RELATED [BTO:0001541]
synonym: "embryonic kidney" RELATED [BTO:0001541]
synonym: "pronephric kidney" EXACT [XAO:0002000]
synonym: "pronephron" RELATED [BTO:0001541]
xref: AAO:0011089
xref: BTO:0001541
xref: EFO:0000927
xref: EHDAA2:0001570
xref: EHDAA:1017
xref: EMAPA:16579
xref: FMA:72170
xref: MAT:0000117
xref: MIAA:0000117
xref: ncithesaurus:Pronephros
xref: SCTID:308804007
xref: TAO:0000151
xref: VHOG:0000037
xref: XAO:0002000
xref: ZFA:0000151
property_value: UBPROP:0000001 "Organ that serves as a transient kidney, providing osmoregulation during early developmental stages and then degenerating during metamorphosis.[AAO]" xsd:string
property_value: UBPROP:0000001 "The embryonic kidney, present at the level of the third somite, is composed of two glomeruli fused at the midline, two pronephric tubules, and paired bilateral pronephric ducts that modify the composition of the blood filtrate before delivering it to the cloaca for excretion.Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0002113 {source="GO"} ! kidney
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0005095 {source="GO"} ! kidney rudiment
relationship: develops_from UBERON:0005721 {source="ZFA"} ! pronephric mesoderm
relationship: develops_from UBERON:0005754 ! rostral part of nephrogenic cord
relationship: part_of UBERON:0003887 {source="OG"} ! intraembryonic coelom
[Term]
id: UBERON:0002122
name: capsule of thymus
def: "the fibrous connective tissue surrounding the thymus." [MP:0002368]
comment: This class was created automatically from a combination of ontologies
synonym: "thymic capsule" EXACT []
synonym: "thymus capsule" EXACT []
xref: FMA:72204
xref: MA:0000766
xref: ncithesaurus:Thymic_Capsule
xref: SCTID:188181003
is_a: UBERON:0003893 ! capsule
relationship: surrounds UBERON:0002370
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0002370 ! thymus
relationship: surrounds UBERON:0002370 ! thymus
[Term]
id: UBERON:0002123
name: cortex of thymus
def: "Cortical portion of thymus, mainly composed of lymphoid cells, supported by a network of finely-branched epithelial reticular cells, which is continuous with a similar network in the medullary portion. This network forms an adventitia to the blood vessels. The cortex is the location of the earliest events in thymocyte development, where T cell receptor gene rearrangement and positive selection takes place." [Wikipedia:Thymus#Cortex]
comment: Histologically, the thymus can be divided into a central medulla and a peripheral cortex which is surrounded by an outer capsule. The cortex and medulla play different roles in the development of T cells. Cells in the thymus can be divided into thymic stromal cells and cells of hematopoietic origin[WP]
synonym: "thymic cortex" EXACT [BTO:0002934]
synonym: "thymus cortex" EXACT [MA:0000767]
xref: BTO:0002934
xref: FMA:72205
xref: MA:0000767
xref: ncithesaurus:Thymus_Cortex
xref: SCTID:188262003
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001851 ! cortex
relationship: part_of UBERON:0002370
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0002370 ! thymus
relationship: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0002124
name: medulla of thymus
def: "Medullary portion of thymus. The reticulum is coarser than in the cortex, the lymphoid cells are relatively fewer in number, and there are found peculiar nest-like bodies, the concentric corpuscles of Hassall. These concentric corpuscles are composed of a central mass, consisting of one or more granular cells, and of a capsule formed of epithelioid cells. They are the remains of the epithelial tubes, which grow out from the third branchial pouches of the embryo to form the thymus. Each follicle is surrounded by a vascular plexus, from which vessels pass into the interior, and radiate from the periphery toward the center, forming a second zone just within the margin of the medullary portion. In the center of the medullary portion there are very few vessels, and they are of minute size." [Wikipedia:Thymus#Medulla]
comment: This class was created automatically from a combination of ontologies
synonym: "medulla of thymus gland" EXACT [OBOL:automatic]
synonym: "thymus gland medulla" EXACT [OBOL:automatic]
synonym: "thymus medulla" EXACT []
xref: BTO:0004560
xref: EFO:0001969
xref: FMA:72206
xref: MA:0000771
xref: ncithesaurus:Thymus_Medulla
xref: SCTID:188344009
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000958 ! medulla
relationship: part_of UBERON:0002370
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0002370 ! thymus
relationship: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0002125
name: lobule of thymus
def: "the basic structural unit of the thymus." [MP:0002367]
comment: This class was created automatically from a combination of ontologies
synonym: "thymic lobule" EXACT []
synonym: "thymus lobule" EXACT [MA:0000770]
xref: FMA:72215
xref: MA:0000770
xref: ncithesaurus:Thymic_Lobule
xref: SCTID:187882006
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
relationship: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0002126
name: solitary tract nuclear complex
def: "The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]." [Wikipedia:Nucleus_of_tractus_solitarius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nuclei of solitary tract" EXACT []
synonym: "nucleus tractus solitarii" EXACT [FMA:72242, FMA:TA]
synonym: "solitary nuclei" EXACT []
xref: FMA:72242
xref: SCTID:369080003
property_value: "spatially_disjoint_from" UBERON:0002162
property_value: "spatially_disjoint_from" UBERON:0002591
property_value: "spatially_disjoint_from" UBERON:0002610
property_value: "spatially_disjoint_from" UBERON:0002864
property_value: "spatially_disjoint_from" UBERON:0002866
property_value: "spatially_disjoint_from" UBERON:0002873
property_value: "spatially_disjoint_from" UBERON:0007633
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007245 ! nuclear complex of neuraxis
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002127
name: inferior olivary complex
def: "largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements." [Wikipedia:Inferior_olivary_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "caudal olivary nuclei" RELATED [BTO:0002298]
synonym: "complexus olivaris inferior" RELATED [BTO:0002298]
synonym: "complexus olivaris inferior; nuclei olivares inferiores" RELATED LATIN [Wikipedia:Inferior_olivary_nucleus]
synonym: "inferior olivary nuclear complex" EXACT [FMA:72243]
synonym: "inferior olivary nuclei" RELATED [BTO:0002298]
synonym: "inferior olivary nucleus" RELATED [FMA:72243]
synonym: "inferior olive" EXACT [FMA:72243]
synonym: "nuclei olivares caudales" RELATED [BTO:0002298]
synonym: "nuclei olivares inferiores" RELATED [BTO:0002298]
synonym: "oliva" EXACT [FMA:72243, FMA:TA]
xref: ABA:IO
xref: BM:Me-IO
xref: BTO:0002298
xref: EV:0100277
xref: FMA:72243
xref: http://upload.wikimedia.org/wikipedia/commons/7/72/CerebCircuit.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/CerebCircuit.png/200px-CerebCircuit.png
xref: MA:0001040
xref: NIF_GrossAnatomy:birnlex_1164
xref: TAO:0000215
xref: VHOG:0001627
xref: ZFA:0000215
property_value: "spatially_disjoint_from" UBERON:0001719
property_value: "spatially_disjoint_from" UBERON:0002154
property_value: "spatially_disjoint_from" UBERON:0002155
property_value: "spatially_disjoint_from" UBERON:0002559
property_value: "spatially_disjoint_from" UBERON:0002673
property_value: "spatially_disjoint_from" UBERON:0002870
property_value: "spatially_disjoint_from" UBERON:0002871
property_value: "spatially_disjoint_from" UBERON:0002872
property_value: "spatially_disjoint_from" UBERON:0002877
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007245 ! nuclear complex of neuraxis
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0000128 ! olivary body
[Term]
id: UBERON:0002128
name: superior olivary complex
def: "The superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound[GO]." [Wikipedia:Superior_olivary_complex]
comment: GO -- In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound. -- TODO fix GO def to be the same throughout
subset: uberon_slim
synonym: "nucleus olivaris superior" EXACT [FMA:72247, FMA:TA]
synonym: "nucleus olivaris superior" RELATED LATIN [Wikipedia:Superior_olivary_complex]
synonym: "superior olivary nuclei" EXACT [FMA:72247]
synonym: "superior olivary nucleus" RELATED [FMA:72247]
synonym: "superior olive" EXACT [FMA:72247]
xref: ABA:SOC
xref: EV:0100263
xref: FMA:72247
xref: http://upload.wikimedia.org/wikipedia/commons/4/46/Gray713.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray713.png/200px-Gray713.png
xref: NIF_GrossAnatomy:birnlex_1307
property_value: "spatially_disjoint_from" UBERON:0002597
property_value: "spatially_disjoint_from" UBERON:0006840
property_value: "spatially_disjoint_from" UBERON:0007634
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007245 ! nuclear complex of neuraxis
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002129
name: cerebellar cortex
def: "The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function[GO]." [Wikipedia:Cerebellar_cortex]
comment: The circuits in the cerebellar cortex look similar across all classes of vertebrates, including fish, reptiles, birds, and mammals (e.g., Fig. 2). This has been taken as evidence that the cerebellum performs functions important to all vertebrate species. (Wikipedia)
subset: uberon_slim
synonym: "cortex cerebellaris" RELATED [BTO:0000043]
xref: ABA:CBX
xref: BM:CB-Cbx
xref: BTO:0000043
xref: EV:0100294
xref: FMA:72248
xref: GAID:596
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Cerebellum_NIH.png/200px-Cerebellum_NIH.png
xref: MA:0000199
xref: MESH:A.08.186.211.132.810.428.200.212
xref: ncithesaurus:Cerebellar_Cortex
xref: NIF_GrossAnatomy:birnlex_1566
xref: SCTID:361593004
xref: VHOG:0001597
property_value: "spatially_disjoint_from" UBERON:0002130
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002130
name: cerebellar nuclear complex
alt_id: UBERON:0004007
def: "the gray matter nuclei located in the center of the cerebellum, embedded in the white matter, which receive inhibitory (GABAergic) inputs from Purkinje cells in the cerebellar cortex and excitatory (glutamatergic) inputs from mossy fiber pathways; all output fibers of the cerebellum originate from the these nuclei[MP]" [MP:0009979, Wikipedia:Deep_cerebellar_nuclei]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "central nuclei" EXACT []
synonym: "cerebellar nuclei" EXACT []
synonym: "deep cerebellar nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1568]
synonym: "deep cerebellar nuclei" EXACT []
synonym: "deep cerebellar nucleus" EXACT []
synonym: "intracerebellar nuclei" EXACT []
synonym: "intrinsic nuclei of cerebellum" EXACT []
synonym: "nuclei cerebelli" EXACT [FMA:72249, FMA:TA]
synonym: "nuclei cerebelli" RELATED LATIN [Wikipedia:Deep_cerebellar_nuclei]
synonym: "roof nuclei-2" EXACT []
xref: ABA:CBN
xref: EV:0100299
xref: FMA:72249
xref: GAID:599
xref: http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray707.png/200px-Gray707.png
xref: MA:0000203
xref: MESH:A.08.186.211.132.810.428.200.337
xref: NIF_GrossAnatomy:birnlex_1568
property_value: "spatially_disjoint_from" UBERON:0002129
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002131
name: anterior lobe of cerebellum
def: "The anterior lobe of cerebellum is the portion of the cerebellum responsible for mediating unconscious proprioception. In alcoholics, it can deteriorate. It is sometimes equated to the 'paleocerebellum'. [WP,unvetted]." [Wikipedia:Anterior_lobe_of_cerebellum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior cerebellar lobe" EXACT []
synonym: "anterior lobe of cerebellum" EXACT []
synonym: "anterior lobe of the cerebellum" EXACT [NIF_GrossAnatomy:birnlex_1118]
synonym: "cerebellum anterior lobe" EXACT []
xref: EV:0100295
xref: FMA:72251
xref: http://upload.wikimedia.org/wikipedia/commons/1/13/CerebellumRegions.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/13/CerebellumRegions.jpg/200px-CerebellumRegions.jpg
xref: MA:0000991
xref: NIF_GrossAnatomy:birnlex_1118
xref: SCTID:279359004
xref: VHOG:0001598
is_a: UBERON:0005293 ! cerebellum lobe
[Term]
id: UBERON:0002132
name: dentate nucleus
def: "The Dentate nucleus is located within the deep white matter of each cerebellar hemisphere. It is the largest of the four deep cerebellar nuclei, the others being the fastigial nucleus and the interposed nucleus (globose and emboliform nuclei combined). It is responsible for the planning, initiation and control of volitional movements. It therefore receives its afferents from the premotor cortex and the supplementary motor cortex. Its efferents project via the superior cerebellar peduncle through the red nucleus to the ventrolateral thalamus (crossing over at the pontomesencephalic junction). It consists of an irregularly folded, of a grayish-yellow color, containing white fibers, and presenting on its antero-medial aspect an opening, the hilus, from which most of the fibers of the superior peduncle emerge. [WP,unvetted]." [Wikipedia:Dentate_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dentate cerebellar nucleus" EXACT [NIF_GrossAnatomy:birnlex_1171]
synonym: "lateral cerebellar nucleus" EXACT []
synonym: "lateral nucleus of cerebellum" EXACT []
synonym: "nucleus dentatus" RELATED LATIN [Wikipedia:Dentate_nucleus]
xref: ABA:DN
xref: BM:CB-CBL
xref: EV:0100300
xref: FMA:72260
xref: http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray707.png/200px-Gray707.png
xref: MA:0001008
xref: NIF_GrossAnatomy:birnlex_1171
xref: VHOG:0001700
property_value: "spatially_disjoint_from" UBERON:0002153
is_a: UBERON:0002130 ! cerebellar nuclear complex
is_a: UBERON:0002946 ! regional part of cerebellum
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0002130 ! cerebellar nuclear complex
[Term]
id: UBERON:0002133
name: atrioventricular valve
def: "Cardiac valve which has as its parts the leaf of cardiac valve that separates the atrium from the ventricle. // The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001." [Wikipedia:Heart_valve#Atrioventricular_valves, ZFIN:curator]
comment: AO notes: in ZFA this is part of both atrium and ventricle, but we use a connecting relationship here
subset: vertebrate_core
synonym: "AV valve" EXACT []
xref: EHDAA2:0000153
xref: EHDAA:7421
xref: FMA:7233
xref: galen:AtrioventricularValve
xref: MA:0002789
xref: OpenCyc:Mx4rfCfdorrpEduAAAACs6hRXg
xref: SCTID:11124005
xref: TAO:0005064
xref: VHOG:0001472
xref: ZFA:0005064
property_value: UBPROP:0000001 "The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001.[TAO]" xsd:string
is_a: UBERON:0000946 ! cardial valve
relationship: attaches_to UBERON:0004292 {source="FMA"} ! cardiac skeleton
relationship: connects UBERON:0002081 ! cardiac atrium
relationship: connects UBERON:0002082 ! cardiac ventricle
relationship: develops_from UBERON:0002062 {source="PMID:15797462", source="ZFA"} ! endocardial cushion
[Term]
id: UBERON:0002134
name: tricuspid valve
def: "Atrioventricular valve which has as its parts the anterior, posterior and septal leaflets, attached to the fibrous ring of tricuspid valve.[FMA]" [FMA:FMA, Wikipedia:Tricuspid_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "right atrioventricular valve" EXACT []
synonym: "valva atrioventricularis dextra" EXACT [FMA:7234, FMA:TA]
synonym: "valva atrioventricularis dextra, valvula tricuspidalis" RELATED LATIN [Wikipedia:Tricuspid_valve]
xref: EHDAA2:0004029
xref: EHDAA:7427
xref: EMAPA:17873
xref: FMA:7234
xref: GAID:567
xref: galen:TricuspidValve
xref: http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000090
xref: MESH:A.07.541.510.893
xref: ncithesaurus:Tricuspid_Valve
xref: OpenCyc:Mx4rvuWAAJwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0002081
xref: SCTID:181288007
xref: VHOG:0000816
is_a: UBERON:0002133 ! atrioventricular valve
is_a: UBERON:0005208 ! right atrium valve
relationship: part_of UBERON:0005965 ! outflow part of right atrium
[Term]
id: UBERON:0002135
name: mitral valve
def: "Atrioventricular valve which has as its parts the anterior and posterior leaflets, attached to the fibrous ring of mitral valve.[FMA]" [FMA:FMA, Wikipedia:Mitral_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bicuspid valve" RELATED []
synonym: "left atrioventricular valve" EXACT []
synonym: "valva atrioventricularis sinistra" EXACT [FMA:7235, FMA:TA]
synonym: "valva atrioventricularis sinistra, valva mitralis" RELATED LATIN [Wikipedia:Mitral_valve]
xref: EFO:0003933
xref: EHDAA2:0000168
xref: EMAPA:17871
xref: FMA:7235
xref: GAID:565
xref: galen:MitralValve
xref: http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000088
xref: MESH:A.07.541.510.507
xref: ncithesaurus:Mitral_Valve
xref: OpenCyc:Mx4rv4l2nJwpEbGdrcN5Y29ycA
xref: SCTID:181286006
xref: VHOG:0000817
is_a: UBERON:0002133 ! atrioventricular valve
disjoint_from: UBERON:0007120 ! premolar tooth
[Term]
id: UBERON:0002136
name: hilus of dentate gyrus
comment: Merge with CA4?
synonym: "CA4" RELATED []
synonym: "dentate gyrus hilus" EXACT []
synonym: "field CA4 of hippocampal formation" EXACT []
xref: FMA:72358
xref: MA:0000947
xref: NIF_GrossAnatomy:birnlex_1482
is_a: UBERON:0002744 ! hilum of dentate nucleus
is_a: UBERON:0011299 ! white matter of telencephalon
relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation
[Term]
id: UBERON:0002137
name: aortic valve
def: "Cardiac valve which has as its parts the anterior, right posterior and left posterior cusps, attached to the fibrous ring of aortic valve.[FMA]" [FMA:FMA, Wikipedia:Aortic_valve]
comment: Human variation: It is normally tricuspid (with three leaflets), although in 1% of the population it is found to be congenitally bicuspid (two leaflets)
subset: uberon_slim
synonym: "valva aortae" RELATED LATIN [Wikipedia:Aortic_valve]
xref: BTO:0004628
xref: EFO:0003879
xref: EHDAA2:0000134
xref: EHDAA:4410
xref: EMAPA:17870
xref: FMA:7236
xref: GAID:563
xref: galen:AorticValve
xref: http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg
xref: MA:0000087
xref: MESH:A.07.541.510.110
xref: ncithesaurus:Aortic_Valve
xref: OpenCyc:Mx4rv5914JwpEbGdrcN5Y29ycA
xref: SCTID:181287002
xref: VHOG:0000815
is_a: UBERON:0005623 {source="MA"} ! semi-lunar valve
relationship: part_of UBERON:0005956 ! outflow part of left ventricle
[Term]
id: UBERON:0002138
name: habenulo-interpeduncular tract
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "fasciculus retroflexus" EXACT []
synonym: "fasciculus retroflexus (meynert)" EXACT [NIF_GrossAnatomy:birnlex_1504]
synonym: "habenulointerpeduncular fasciculus" EXACT []
synonym: "habenulointerpeduncular tract" RELATED []
synonym: "habenulopeduncular tract" EXACT []
synonym: "Meynert's retroflex bundle" EXACT []
synonym: "tractus habenulo-interpeduncularis" EXACT [ZFA:0000353]
xref: BM:HPT
xref: FMA:72400
xref: NIF_GrossAnatomy:birnlex_1504
xref: SCTID:369194000
xref: TAO:0000353
xref: ZFA:0000353
is_a: UBERON:0002784 ! regional part of diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002139
name: subcommissural organ
def: "The subcommissural organ is a circumventricular organ consisting of ependymal cells which secrete SCO-spondin[WP,partially vetted]." [PMID:9579598, Wikipedia:Subcommissural_organ]
comment: Occurs throughout the vertebartes [PMID:9579598, doi:10.1002/ar.1091260210]. First appears in hagfish(Olsson). In many species, including the human, it reaches its full development during embryonic life[PMID:9579598]. During the course of phyletic evolution, one notes various changes. Indeed, in lower vertebrates, the SCO presents a greater degree of enzyme activity than the ependyma while in birds the ependyma demonstrates a more intense activity than the SCO[PMID:479574] Sometimes preceded by flexural organ[doi:10.1007/BF00303086]
subset: uberon_slim
subset: vertebrate_core
synonym: "dorsal subcommissural organ" RELATED []
synonym: "organum subcommissurale" RELATED LATIN [Wikipedia:Subcommissural_organ]
synonym: "SCO" RELATED []
xref: BTO:0001820
xref: FMA:72414
xref: GAID:794
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png
xref: MA:0002941
xref: MESH:A.08.713.810
xref: NIF_GrossAnatomy:birnlex_1028
xref: SCTID:369193006
xref: TAO:0000683
xref: ZFA:0000683
property_value: "present_in_taxon" NCBITaxon:7742
is_a: UBERON:0002966 ! regional part of midbrain tectum
is_a: UBERON:0010134 {source="MA"} ! secretory circumventricular organ
relationship: part_of UBERON:0002314 {source="MA"} ! midbrain tectum
relationship: part_of UBERON:0011357 ! Reissner's fiber
[Term]
id: UBERON:0002140
name: parabigeminal nucleus
comment: AO notes: in MA this is part of the tegmentum/brainstem
synonym: "nucleus parabigeminalis" EXACT [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=482]
xref: ABA:PBG
xref: BM:PBG
xref: FMA:72415
xref: MA:0001074
xref: NIF_GrossAnatomy:birnlex_1007
xref: VHOG:0001701
property_value: "homologous_to" ZFA:0000398
is_a: UBERON:0011214 {source="FMA", source="NIF"} ! nucleus of midbrain tectum
[Term]
id: UBERON:0002141
name: parvocellular oculomotor nucleus
def: "The Edinger-Westphal nucleus (also known as the accessory oculomotor nucleus) is the accessory parasympathetic cranial nerve nucleus of the oculomotor nerve, supplying the constricting muscles of the iris. Alternatively, the Edinger-Westphal nucleus is a term often used to refer to the adjacent population of non-preganglionic neurons that do not project to the ciliary ganglion, but rather project to the spinal cord, dorsal raphe nucleus, and septal nuclei. Unlike the classical, preganglionic Edinger-Westphal neurons that contain choline acetyltransferase, neurons of the non-preganglionic Edinger-Westphal nucleus have been shown to contain various stress- and feeding-related neuropeptides, such as Urocortin and cocaine- and amphetamine-regulated transcript. Proper nomenclature for this distinct brain region has not yet been established. [WP,unvetted]." [Wikipedia:Edinger-westphal_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "accessory oculomotor nucleus" EXACT []
synonym: "edinger-westphal nucleus" EXACT []
synonym: "nucleus Edinger-Westphal" EXACT [ZFA:0000244]
synonym: "oculomotor nucleus, parvocellular part" EXACT []
xref: ABA:EW
xref: BM:EW
xref: FMA:72424
xref: MA:0001071
xref: NIF_GrossAnatomy:birnlex_822
xref: SCTID:62088007
xref: TAO:0000244
xref: ZFA:0000244
property_value: "spatially_disjoint_from" UBERON:0001715
property_value: "spatially_disjoint_from" UBERON:0001944
property_value: "spatially_disjoint_from" UBERON:0001947
property_value: "spatially_disjoint_from" UBERON:0001966
property_value: "spatially_disjoint_from" UBERON:0002438
property_value: "spatially_disjoint_from" UBERON:0002691
property_value: "spatially_disjoint_from" UBERON:0002696
property_value: "spatially_disjoint_from" UBERON:0002722
property_value: "spatially_disjoint_from" UBERON:0002995
property_value: "spatially_disjoint_from" UBERON:0003040
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002142
name: pedunculopontine tegmental nucleus
def: "The pedunculopontine nucleus (PPN) (or pedunculopontine tegmental nucleus, PPTN) is located in the brainstem, caudal to the substantia nigra and adjacent to the superior cerebellar peduncle. It is composed by a wide variety of neurochemical cell types, including cholinergic, glutamatergic and GABAergic cells. In the classical sense, the PPN is considered to be one of the main components of the reticular activating system. [WP,unvetted]." [Wikipedia:Pedunculopontine_tegmental_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "peduncular pontine nucleus" EXACT []
synonym: "pedunculopontine nucleus" EXACT []
xref: ABA:PPN
xref: BM:Pons-PPT
xref: FMA:72429
xref: MA:0001020
xref: NIF_GrossAnatomy:birnlex_1437
property_value: "spatially_disjoint_from" UBERON:0001965
property_value: "spatially_disjoint_from" UBERON:0007412
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0002275 ! reticular formation
[Term]
id: UBERON:0002143
name: dorsal tegmental nucleus
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "dorsal tegmental nucleus (gudden)" EXACT []
synonym: "dorsal tegmental nucleus of gudden" EXACT [NIF_GrossAnatomy:birnlex_992]
synonym: "gudden nucleus" EXACT []
synonym: "nucleus tegmentalis dorsalis" EXACT [ZFA:0000346]
synonym: "nucleus tegmentalis posterior" EXACT [FMA:72434, FMA:TA]
synonym: "posterior tegmental nucleus" EXACT []
synonym: "von Gudden's nucleus" EXACT []
xref: ABA:DTN
xref: BM:TD
xref: FMA:72434
xref: MA:0001013
xref: NIF_GrossAnatomy:birnlex_992
xref: TAO:0000346
xref: VHOG:0001368
xref: ZFA:0000346
property_value: "spatially_disjoint_from" UBERON:0002147
property_value: "spatially_disjoint_from" UBERON:0002149
property_value: "spatially_disjoint_from" UBERON:0002151
property_value: "spatially_disjoint_from" UBERON:0002633
property_value: "spatially_disjoint_from" UBERON:0002682
property_value: "spatially_disjoint_from" UBERON:0002963
property_value: "spatially_disjoint_from" UBERON:0002968
property_value: "spatially_disjoint_from" UBERON:0003011
property_value: "spatially_disjoint_from" UBERON:0007632
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002144
name: peripeduncular nucleus
def: "a group of neuron cell bodies that form a thin, caplike configuration over the dorsolateral aspect of the crus cerebri; many of its cells are acetylcholinesterase positive." [http://www.medilexicon.com/medicaldictionary.php?t=61630]
comment: Note that FMA and NIF support this being part of midbrain tegmentum; MA places this in the thalamus and ABA supports thalamus. todo - check. for now we take a conservative position and assert overlaps for both rather than part of
synonym: "peripeduncular nucleus of pons" EXACT [FMA:72437]
xref: ABA:PP
xref: BM:MB-PPN
xref: FMA:72437
xref: MA:0000875
xref: NIF_GrossAnatomy:birnlex_1474
xref: SCTID:25949000
property_value: "spatially_disjoint_from" UBERON:0002704
property_value: "spatially_disjoint_from" UBERON:0002776
is_a: UBERON:0002308 ! nucleus of brain
relationship: overlaps UBERON:0001900 {source="MA"} ! subthalamus
relationship: overlaps UBERON:0001943 {source="NIF"} ! midbrain tegmentum
[Term]
id: UBERON:0002145
name: interpeduncular nucleus
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "interpeduncular ganglion" EXACT []
xref: ABA:IPN
xref: BM:MB-IP
xref: FMA:72439
xref: MA:0001069
xref: NIF_GrossAnatomy:birnlex_1000
xref: TAO:0000903
xref: ZFA:0000903
property_value: "spatially_disjoint_from" UBERON:0002043
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum
[Term]
id: UBERON:0002146
name: pulmonary valve
def: "Cardiac valve which has as its parts the right anterior, left anterior and posterior cusps, attached to the fibrous ring of pulmonary valve.[FMA]" [FMA:FMA, Wikipedia:Pulmonary_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pulmonic valve" EXACT []
synonym: "valva trunci pulmonalis" RELATED LATIN [Wikipedia:Pulmonary_valve]
xref: EHDAA2:0001577
xref: EHDAA:4412
xref: EMAPA:17872
xref: FMA:7246
xref: GAID:566
xref: galen:PulmonaryValve
xref: http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000089
xref: MESH:A.07.541.510.738
xref: ncithesaurus:Pulmonary_Valve
xref: OpenCyc:Mx4rwP6uq5wpEbGdrcN5Y29ycA
xref: SCTID:181289004
xref: VHOG:0000814
is_a: UBERON:0005623 {source="MA"} ! semi-lunar valve
[Term]
id: UBERON:0002147
name: reticulotegmental nucleus
comment: This class was created automatically from a combination of ontologies
synonym: "nucleus reticularis tegmenti pontis" EXACT [FMA:72471, FMA:TA]
synonym: "reticular tegmental nucleus" EXACT []
synonym: "reticulotegmental nucleus of pons" EXACT []
synonym: "tegmental reticular nucleus, pontine gray" EXACT []
xref: ABA:TRN
xref: FMA:72471
xref: MA:0001025
xref: NIF_GrossAnatomy:birnlex_882
property_value: "spatially_disjoint_from" UBERON:0002143
property_value: "spatially_disjoint_from" UBERON:0002149
property_value: "spatially_disjoint_from" UBERON:0002151
property_value: "spatially_disjoint_from" UBERON:0002633
property_value: "spatially_disjoint_from" UBERON:0002682
property_value: "spatially_disjoint_from" UBERON:0002963
property_value: "spatially_disjoint_from" UBERON:0002968
property_value: "spatially_disjoint_from" UBERON:0003011
property_value: "spatially_disjoint_from" UBERON:0007632
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0002275 ! reticular formation
[Term]
id: UBERON:0002148
name: locus ceruleus
def: "The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic[GO]. Bluish region in the superior angle of the fourth ventricle floor, corresponding to melanin-like pigmented nerve cells which lie lateral to the ponto-mesencephalic central gray (griseum centrale). It is also known as nucleus pigmentosus pontis[GAID]." [GAID:577, GO:0021703, Wikipedia:Locus_ceruleus]
comment: TODO - check ZFA/pons. also GO says part of dorsorostral pons
subset: uberon_slim
subset: vertebrate_core
synonym: "blue nucleus" EXACT [NIF_GrossAnatomy:birnlex_905]
synonym: "caerulean nucleus" EXACT []
synonym: "locus caeruleus" EXACT [NIF_GrossAnatomy:birnlex_905]
synonym: "locus cinereus" RELATED [BTO:0001408]
synonym: "locus coeruleu" EXACT []
synonym: "locus coeruleus" EXACT []
synonym: "nucleus caeruleus" EXACT [FMA:72478, FMA:TA]
synonym: "nucleus of locus caeruleus" EXACT []
synonym: "nucleus pigmentosus pontis" EXACT [NIF_GrossAnatomy:birnlex_905]
synonym: "substantia ferruginea" EXACT [NIF_GrossAnatomy:birnlex_905]
xref: ABA:LC
xref: BM:Pons-LC
xref: BTO:0001408
xref: EFO:0001963
xref: FMA:72478
xref: GAID:577
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png
xref: MA:0001017
xref: MESH:A.08.186.211.132.659.473
xref: ncithesaurus:Locus_Coeruleus
xref: NIF_GrossAnatomy:birnlex_905
xref: SCTID:369016004
xref: TAO:0000539
xref: ZFA:0000539
property_value: "spatially_disjoint_from" UBERON:0002047
property_value: "spatially_disjoint_from" UBERON:0002267
property_value: "spatially_disjoint_from" UBERON:0002587
property_value: "spatially_disjoint_from" UBERON:0003004
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002149
name: superior salivatory nucleus
def: "visceromotor cranial nerve nucleus located in the pontine tegmentum." [Wikipedia:Superior_salivatory_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "superior salivary nucleus" EXACT [GO:0021753]
xref: ABA:SSN
xref: EHDAA2:0004646
xref: FMA:72482
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray788.png/200px-Gray788.png
xref: MA:0001027
xref: NIF_GrossAnatomy:birnlex_1131
xref: SCTID:369028007
property_value: "spatially_disjoint_from" UBERON:0002143
property_value: "spatially_disjoint_from" UBERON:0002147
property_value: "spatially_disjoint_from" UBERON:0002151
property_value: "spatially_disjoint_from" UBERON:0002633
property_value: "spatially_disjoint_from" UBERON:0002682
property_value: "spatially_disjoint_from" UBERON:0002963
property_value: "spatially_disjoint_from" UBERON:0002968
property_value: "spatially_disjoint_from" UBERON:0003011
property_value: "spatially_disjoint_from" UBERON:0007632
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0004133 ! salivatory nucleus
relationship: develops_from UBERON:0010125 {evidence="definitional"} ! future superior salivatory nucleus
relationship: part_of UBERON:0003023 ! pontine tegmentum
[Term]
id: UBERON:0002150
name: superior cerebellar peduncle
def: "The superior cerebellar peduncles (brachium conjunctivum), two in number, emerge from the upper and medial part of the white substance of the hemispheres and are placed under cover of the upper part of the cerebellum. They are joined to each other across the middle line by the anterior medullary velum, and can be followed upward as far as the inferior colliculi, under which they disappear. Below, they form the upper lateral boundaries of the fourth ventricle, but as they ascend they converge on the dorsal aspect of the ventricle and thus assist in roofing it in. All fibers (except vestibular fibers to the vestibular nuclei through the inferior cerebellar peduncle) carrying information from the cerebellum to the midbrain and pons pass through the superior cerebellar peduncle. [WP,unvetted]." [Wikipedia:Superior_cerebellar_peduncle]
comment: Editor notes: we follow NIF in dividing this into 3 parts. This allows for consistency with ABA. AO notes: we make the TAO class disjoint for now as it's not clear if this is the analagous structure
subset: uberon_slim
synonym: "brachium conjunctivum" EXACT [NIF_GrossAnatomy:birnlex_1711]
synonym: "pedunculus cerebellaris superior" RELATED LATIN [Wikipedia:Superior_cerebellar_peduncle]
synonym: "superior peduncle" RELATED [Wikipedia:Superior_cerebellar_peduncle]
xref: BM:BC
xref: http://upload.wikimedia.org/wikipedia/commons/9/97/Gray704.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray704.png/200px-Gray704.png
xref: MA:0002746
xref: NIF_GrossAnatomy:birnlex_1711
xref: SCTID:279218008
is_a: UBERON:0007416 ! cerebellar peduncle
[Term]
id: UBERON:0002151
name: pontine nuclear group
def: "The pontine nuclei are a part of the pons which store the memory of intention during motor activity. Corticopontine fibres carry information from the primary motor cortex to the ipsilateral pontine nucleus in the ventral pons, and the pontocerebellar projection then carries that information to the contralateral cerebellum via the middle cerebellar peduncle. They therefore allow modification of actions in the light of their outcome, or error correction, and are hence important in learning motor skills. [WP,unvetted]." [Wikipedia:Pontine_nuclei]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nuclei pontis" RELATED LATIN [Wikipedia:Pontine_nuclei]
synonym: "nuclei pontis" RELATED [BTO:0003396]
synonym: "pontine gray" EXACT [NIF_GrossAnatomy:birnlex_1516]
synonym: "pontine gray matter" RELATED [BTO:0003396]
synonym: "pontine nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1516]
synonym: "pontine nuclear group" EXACT [FMA:72512]
synonym: "pontine nuclei" EXACT []
synonym: "pontine nucleus" EXACT []
xref: ABA:PG
xref: BM:Pons-PGr
xref: BTO:0003396
xref: FMA:72512
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_horizontal_KB.svg
xref: MA:0001021
xref: NIF_GrossAnatomy:birnlex_1516
xref: SCTID:304942009
property_value: "spatially_disjoint_from" UBERON:0002143
property_value: "spatially_disjoint_from" UBERON:0002147
property_value: "spatially_disjoint_from" UBERON:0002149
property_value: "spatially_disjoint_from" UBERON:0002633
property_value: "spatially_disjoint_from" UBERON:0002682
property_value: "spatially_disjoint_from" UBERON:0002963
property_value: "spatially_disjoint_from" UBERON:0002968
property_value: "spatially_disjoint_from" UBERON:0003011
property_value: "spatially_disjoint_from" UBERON:0007632
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0002567 ! basal part of pons
[Term]
id: UBERON:0002152
name: middle cerebellar peduncle
def: "The middle cerebellar peduncles (brachia pontis) are composed entirely of centripetal fibers, which arise from the cells of the nuclei pontis of the opposite side and end in the cerebellar cortex; the fibers are arranged in three fasciculi, superior, inferior, and deep. The superior fasciculus, the most superficial, is derived from the upper transverse fibers of the pons; it is directed backward and lateralward superficial to the other two fasciculi, and is distributed mainly to the lobules on the inferior surface of the cerebellar hemisphere and to the parts of the superior surface adjoining the posterior and lateral margins. The inferior fasciculus is formed by the lowest transverse fibers of the pons; it passes under cover of the superior fasciculus and is continued downward and backward more or less parallel with it, to be distributed to the folia on the under surface close to the vermis. The deep fasciculus comprises most of the deep transverse fibers of the pons. It is at first covered by the superior and inferior fasciculi, but crosses obliquely and appears on the medial side of the superior, from which it receives a bundle; its fibers spread out and pass to the upper anterior cerebellar folia. The fibers of this fasciculus cover those of the restiform body. [WP,unvetted]." [Wikipedia:Middle_cerebellar_peduncle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "brachium pontis" EXACT [NIF_GrossAnatomy:birnlex_1529]
synonym: "pedunculus cerebellaris medius" RELATED LATIN [Wikipedia:Middle_cerebellar_peduncle]
xref: BM:Pons-BP
xref: FMA:72515
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray705.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2b/Gray705.png/200px-Gray705.png
xref: MA:0002745
xref: NIF_GrossAnatomy:birnlex_1529
xref: NIF_GrossAnatomy:birnlex_1699
xref: SCTID:279219000
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0007416 ! cerebellar peduncle
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002298 ! brainstem
relationship: part_of UBERON:0002567 {source="FMA"} ! basal part of pons
[Term]
id: UBERON:0002153
name: fastigial nucleus
def: "The fastigial nucleus or nucleus fastigii refers specifically to the concentration of gray matter nearest to the middle line at the anterior end of the superior vermis, and immediately over the roof of the fourth ventricle, from which it is separated by a thin layer of white matter. It is smaller than the nucleus dentatus, but somewhat larger than the nucleus emboliformis and nucleus globosus, the other two independent centers of gray matter in the cerebellum. [WP,unvetted]." [Wikipedia:Fastigial_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "medial (fastigial) nucleus" EXACT []
synonym: "medial cerebellar nucleus" EXACT []
synonym: "nucleus fastigii" RELATED LATIN [Wikipedia:Fastigial_nucleus]
synonym: "roof nucleus-1" EXACT []
xref: ABA:FN
xref: BM:CB-CBM
xref: FMA:72537
xref: http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray707.png/200px-Gray707.png
xref: MA:0001009
xref: NIF_GrossAnatomy:birnlex_1146
xref: VHOG:0001699
property_value: "spatially_disjoint_from" UBERON:0002132
is_a: UBERON:0002130 ! cerebellar nuclear complex
is_a: UBERON:0002946 ! regional part of cerebellum
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0002130 ! cerebellar nuclear complex
[Term]
id: UBERON:0002154
name: lateral reticular nucleus
def: "The lateral reticular nucleus, of the funiculus, can be divided into three subnuclei, the parvocellular, magnocellular and the subtrigeminal. As is typical of the reticular formation, none of these are very distinct subnuclei, but rather blurred distinctions between cell types and location. The lateral reticular nucleus sends all of its projections to the cerebellum. The parvocellular portion of the LRN and the immediately adjacent magnocellular portion send most their projections to the vermis of the cerebellum. The rest of the magnocellular subnucleus sends its projections to the hemisphere regions of the cerebellum. The subtrigeminal nucleus sends its projections to the flocculonodular lobe. All of these efferent pathways are projected in an ipsilateral manner to the cerebellum, the most abundant of which are those to the vermis. This nucleus is also involved in the mediation of inspiration (in-breathing) with a part of the ventral r. nucleus. The afferent pathways to the LRN come from the spinal cord and higher brain structures. Most of the afferents come from the ipsilateral dorsal horn of the spinal cord and project exclusively to the parts of the LRN that do not receive input from the cortex. The spinal cord projections terminate mostly in the parvocellular region along with the adjacent magnocellular cells. This implies that most input from the spinal cord is relayed into the vermis. [WP,unvetted]." [Wikipedia:Lateral_reticular_nucleus]
comment: Comment: note in ABA this is disjoint from MDR, but we relax this here to accomodate FMA
subset: uberon_slim
subset: vertebrate_core
synonym: "lateral reticular nucleus (medulla)" EXACT []
synonym: "nucleus reticularis lateralis medullae oblongatae" RELATED LATIN [Wikipedia:Lateral_reticular_nucleus]
xref: ABA:LRN
xref: BM:LR
xref: FMA:72574
xref: MA:0001047
xref: NIF_GrossAnatomy:nlx_anat_20081246
xref: TAO:0000535
xref: ZFA:0000535
property_value: "spatially_disjoint_from" UBERON:0001719
property_value: "spatially_disjoint_from" UBERON:0002127
property_value: "spatially_disjoint_from" UBERON:0002155
property_value: "spatially_disjoint_from" UBERON:0002673
property_value: "spatially_disjoint_from" UBERON:0002870
property_value: "spatially_disjoint_from" UBERON:0002871
property_value: "spatially_disjoint_from" UBERON:0002872
property_value: "spatially_disjoint_from" UBERON:0002877
is_a: UBERON:0002579 ! regional part of medullary reticular formation
is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata
relationship: part_of UBERON:0009775
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0009775 ! lateral medullary reticular complex
relationship: part_of UBERON:0009775 {source="FMA"} ! lateral medullary reticular complex
relationship: part_of UBERON:0009775 ! lateral medullary reticular complex
[Term]
id: UBERON:0002155
name: gigantocellular nucleus
def: "The gigantocellular nucleus, as the name indicates, is mainly composed of the so called giant neuronal cells. This nucleus has been known to innervate the caudal hypoglossal nucleus, and responds to glutamateric stimuli. The gigantocellular nucleus excites the hypoglossal nucleus, and can play a role in the actions of the said nerve . This nucleus receives connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Retrograde studies have shown that the deep mesencephalic reticular formation and oral pontine reticular nucleus project to the nucleus gigantocellularis. The dorsal rostral section of the nucleus reticularis gigantocellularis is also involved mediating in expiration (or out-breathing) along with the parvocellular nucleus. [WP,unvetted]." [Wikipedia:Gigantocellular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gigantocellular reticular nucleus" EXACT []
synonym: "nucleus gigantocellularis" EXACT [FMA:72576, FMA:TA]
xref: ABA:GRN
xref: FMA:72576
xref: MA:0001037
xref: NIF_GrossAnatomy:nlx_anat_1005001
property_value: "spatially_disjoint_from" UBERON:0001719
property_value: "spatially_disjoint_from" UBERON:0002127
property_value: "spatially_disjoint_from" UBERON:0002154
property_value: "spatially_disjoint_from" UBERON:0002559
property_value: "spatially_disjoint_from" UBERON:0002673
property_value: "spatially_disjoint_from" UBERON:0002870
property_value: "spatially_disjoint_from" UBERON:0002871
property_value: "spatially_disjoint_from" UBERON:0002872
property_value: "spatially_disjoint_from" UBERON:0002877
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002156
name: nucleus raphe magnus
def: "The nucleus raphe magnus, located directly rostral to the raphe obscurus, is afferently stimulated from axons in the spinal cord and cerebellum. This makes the magnus a likely candidate for part of the motor system; however, it seems to participate in the endogenous analgesia system. The magnus receives descending afferents from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, parvocellular reticular nucleus and the prelimbic, infralimbic, medial and lateral precentral cortices . All of these brain areas influence the main function of the raphe magnus. The main function of the magnus is mostly pain mediation; in fact it sends projections to the dorsal horn of the spinal cord to directly inhibit pain. The periaquiductal gray, the epicenter of analgesia, sends efferent connections to the nucleus raphe magnus in when it is stimulated by opiates (endogenous or otherwise). Electrical stimulation of the PAG produces analgesia, as well as administration of morphine to the PAG or n.r. magnus. The antinociceptic effects of electrical stimulation of the PAG can be blocked by administering naloxone, an opiate antagonist, to the n.r. magnus. All of this seems to indicate that the magnus is part of the endogenous opiate system, and acts to inhibit pain in the spinal cord. [WP,unvetted]." [Wikipedia:Nucleus_raphe_magnus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "magnus raphe nucleus" EXACT []
synonym: "nucleus raphes magnus" EXACT [FMA:72584, FMA:TA]
synonym: "nucleus raphes magnus" RELATED LATIN [Wikipedia:Nucleus_raphe_magnus]
synonym: "raphe magnus" RELATED [Wikipedia:Nucleus_raphe_magnus]
synonym: "raphe magnus nucleus" EXACT [NIF_GrossAnatomy:birnlex_1363]
xref: ABA:RM
xref: EFO:0002518
xref: FMA:72584
xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png
xref: MA:0001024
xref: NIF_GrossAnatomy:birnlex_1363
property_value: "spatially_disjoint_from" UBERON:0002157
property_value: "spatially_disjoint_from" UBERON:0002684
is_a: UBERON:0002677 ! regional part of medullary raphe nuclear complex
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0002692 {source="FMA", source="NIF", source="Wikipedia"} ! medullary raphe nuclear complex
[Term]
id: UBERON:0002157
name: nucleus raphe pallidus
def: "The nucleus raphe pallidus receives afferent connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Also, the pallidus receives afferents from the medial preoptic area, median preoptic nucleus and lateral paragigantocellular reticular nuclei . The pallidus has recently been shown to be involved in the activation of a fever as an immunoreaction. It has been implied that the preoptic area is constantly inhibiting the raphe pallidus, especially the rostral portion, with GABA. When the preoptic area receives immune signals from the body, the inhibition stops and the rostral portion of the raphe pallidus excites the intermediolateral cell column, which induces a fever . The raphe pallidus has also been known to mediate the tachycardia response, an extremely high heart rate known to be incited by emotional or psychological stress. Microinjections of a GABA-a antagonist into the raphe pallidus, induces an increased heart rate. Conversely, microinjections of muscimol, a GABA-a agonist, inhibit tachycardia in rats under air-stress stimuli. In both of these cases, GABA is mediating two different sympathetic responses, so clearly the nucleus raphe pallidus is a far more a complex nucleus than previously thought. [WP,unvetted]." [Wikipedia:Nucleus_raphe_pallidus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nucleus raphes pallidus" EXACT [FMA:72586, FMA:TA]
synonym: "nucleus raphes pallidus" RELATED LATIN [Wikipedia:Nucleus_raphe_pallidus]
synonym: "pallidal raphe nucleus" EXACT []
synonym: "raphe pallidus nucleus" EXACT []
xref: ABA:RPA
xref: FMA:72586
xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png
xref: MA:0001051
xref: NIF_GrossAnatomy:birnlex_1375
property_value: "spatially_disjoint_from" UBERON:0002156
property_value: "spatially_disjoint_from" UBERON:0002684
is_a: UBERON:0002677 ! regional part of medullary raphe nuclear complex
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0002692 {source="FMA"} ! medullary raphe nuclear complex
[Term]
id: UBERON:0002158
name: principal inferior olivary nucleus
def: "The inferior olivary nucleus that consists of the major laminar structure." [Wikipedia:Olivary_body#Olivary_nuclei]
comment: This class was created automatically from a combination of ontologies
synonym: "chief inferior olivary nucleus" EXACT []
synonym: "convoluted olive" EXACT [NIF_GrossAnatomy:nlx_anat_20081248]
synonym: "inferior olivary complex, principal olive" EXACT []
synonym: "inferior olive principal nucleus" EXACT []
synonym: "inferior olive, principal nucleus" EXACT []
synonym: "main olivary nucleus" EXACT []
synonym: "nucleus olivaris principalis" EXACT [FMA:72592, FMA:TA]
synonym: "principal nucleus of inferior olive" EXACT []
synonym: "principal olivary nucleus" EXACT []
synonym: "principal olive" EXACT [NIF_GrossAnatomy:nlx_anat_20081248]
xref: FMA:72592
xref: MA:0001046
xref: NIF_GrossAnatomy:nlx_anat_20081248
is_a: UBERON:0007244 ! inferior olivary nucleus
[Term]
id: UBERON:0002159
name: medial accessory inferior olivary nucleus
def: "The inferior olivary nucleus that lies between the primary olivary nucleus and the pyramid, and forms a curved lamina, the concavity of which is directed laterally" [Wikipedia:Olivary_body#Olivary_nuclei]
comment: This class was created automatically from a combination of ontologies
synonym: "inferior olivary complex, medial accessory olive" EXACT []
synonym: "inferior olive medial nucleus" EXACT []
synonym: "inferior olive, medial nucleus" EXACT []
synonym: "medial accessory olivary nucleus" EXACT []
synonym: "nucleus olivaris accessorius medialis" EXACT [FMA:72594, FMA:TA]
xref: FMA:72594
xref: MA:0001045
xref: SCTID:369069003
is_a: UBERON:0007244 ! inferior olivary nucleus
[Term]
id: UBERON:0002160
name: nucleus prepositus
comment: This class was created automatically from a combination of ontologies
synonym: "nucleus praepositus" EXACT [NIF_GrossAnatomy:birnlex_2652]
synonym: "nucleus prepositus hypoglossus" RELATED []
synonym: "prepositus hypoglossal nucleus" EXACT []
synonym: "prepositus nucleus" EXACT []
xref: ABA:PRP
xref: FMA:72596
xref: MA:0001023
xref: NIF_GrossAnatomy:birnlex_2652
xref: SCTID:369078009
property_value: "spatially_disjoint_from" UBERON:0002881
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002161
name: gracile nucleus
def: "Located in the medulla oblongata, the gracile nucleus is one of the dorsal column nuclei that participate in the sensation of fine touch and proprioception of the lower body (legs and trunk). It contains second-order neurons of the dorsal column-medial lemniscus system, which receive inputs from sensory neurons of the dorsal root ganglia and send axons that synapse in the thalamus. The neurons contained within the nucleus form a visible bump called the gracile tubercle on the posterior side of the closed medulla at the floor of the fourth ventricle. The gracile nucleus and fasciculus carry epicritic, kinesthetic, and conscious proprioceptive information from the lower part of the body (below the level of T6 in the spinal cord). The counterpart to the gracile nucleus and fasciculus is the cuneate nucleus and fasciculus, which carries the same type of information, but from the upper body (above T6, excepting the face and ear - the information from the face and ear is carried by the primary sensory trigeminal nucleus). [WP,unvetted]." [Wikipedia:Gracile_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Goll's nucleus" EXACT []
synonym: "golls nucleus" EXACT [NIF_GrossAnatomy:birnlex_2643]
synonym: "nucleus gracilis" EXACT [NIF_GrossAnatomy:birnlex_2643]
synonym: "nucleus gracilis" RELATED LATIN [Wikipedia:Gracile_nucleus]
xref: ABA:GR
xref: BM:Me-Gr
xref: EV:0100280
xref: FMA:72602
xref: http://upload.wikimedia.org/wikipedia/commons/d/df/Gray688.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray688.png/200px-Gray688.png
xref: MA:0001038
xref: NIF_GrossAnatomy:birnlex_2643
xref: SCTID:369071003
property_value: "spatially_disjoint_from" UBERON:0002045
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002162
name: area postrema
def: "A small, rounded eminence on each side of the FOURTH VENTRICLE, which receives nerve fibers from the SOLITARY NUCLEUS , SPINAL CORD, and adjacent areas of the MEDULLA. The area postrema lies outside the BLOOD-BRAIN BARRIER and its functions include acting as an emetic chemoreceptor." [MESH:A.08.186.211.132.810.406.286, Wikipedia:Area_postrema]
comment: Function notes: vomiting center in humans[WP]
subset: uberon_slim
subset: vertebrate_core
xref: ABA:AP
xref: BTO:0003425
xref: FMA:72607
xref: GAID:591
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png
xref: MA:0001034
xref: MESH:A.08.186.211.132.810.406.286
xref: NIF_GrossAnatomy:birnlex_2636
xref: SCTID:369039005
xref: TAO:0005146
xref: ZFA:0005146
property_value: "spatially_disjoint_from" UBERON:0002126
property_value: "spatially_disjoint_from" UBERON:0002591
property_value: "spatially_disjoint_from" UBERON:0002610
property_value: "spatially_disjoint_from" UBERON:0002864
property_value: "spatially_disjoint_from" UBERON:0002866
property_value: "spatially_disjoint_from" UBERON:0002873
property_value: "spatially_disjoint_from" UBERON:0007633
property_value: UBPROP:0000001 "An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation. Ma 1997.[TAO]" xsd:string
is_a: UBERON:0002678 ! regional part of medulla oblongata
is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ
relationship: part_of UBERON:0001896 {source="MA", source="ZFA"} ! medulla oblongata
[Term]
id: UBERON:0002163
name: inferior cerebellar peduncle
def: "The upper part of the posterior district of the medulla oblongata is occupied by the inferior peduncle, a thick rope-like strand situated between the lower part of the fourth ventricle and the roots of the glossopharyngeal and vagus nerves. Each cerebellar inferior peduncle connects the medulla spinalis and medulla oblongata with the cerebellum, and comprises the juxtarestiform body and restiform body. Important fibers running through the inferior cerebellar peduncle include the spinocerebellar tract and axons from the inferior olivary nucleus, among others. [WP,unvetted]." [Wikipedia:Inferior_cerebellar_peduncle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "corpus restiforme" EXACT [FMA:72615, FMA:TA]
synonym: "inferior peduncle" RELATED [Wikipedia:Inferior_cerebellar_peduncle]
synonym: "pedunculus cerebellaris inferior" RELATED LATIN [Wikipedia:Inferior_cerebellar_peduncle]
synonym: "restiform body" EXACT [NIF_GrossAnatomy:birnlex_1691]
xref: BM:RB
xref: FMA:72615
xref: http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fc/Gray677.png/200px-Gray677.png
xref: MA:0002744
xref: NIF_GrossAnatomy:birnlex_1645
xref: NIF_GrossAnatomy:birnlex_1691
xref: SCTID:362418008
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0007416 ! cerebellar peduncle
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata
[Term]
id: UBERON:0002164
name: tectobulbar tract
def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain." [GO:0034429]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "tecto-bulbar tract" EXACT []
xref: FMA:72645
xref: NIF_GrossAnatomy:birnlex_750
xref: SCTID:369265000
xref: TAO:0000446
xref: ZFA:0000446
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002165
name: endocardium
def: "The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber[FMA]." [FMA:7280, Wikipedia:Endocardium]
comment: fixed in GO to reflect FMA. See email to David/Varsha June 18 2010
subset: uberon_slim
subset: vertebrate_core
synonym: "heart endocardium" EXACT []
xref: AAO:0010408
xref: BTO:0000387
xref: EFO:0000821
xref: EHDAA2:0004153
xref: EV:0100021
xref: FMA:7280
xref: GAID:550
xref: galen:Endocardium
xref: http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray493.png/200px-Gray493.png
xref: MA:0000076
xref: MAT:0000455
xref: MESH:A.07.541.207
xref: ncithesaurus:Endocardium
xref: OpenCyc:Mx4rsWA75K1cEduAAADggVaqvw
xref: SCTID:362013006
xref: TAO:0001320
xref: VHOG:0000084
xref: XAO:0000066
xref: ZFA:0001320
property_value: UBPROP:0000001 "Layer that lines the lumen of the heart.[TAO]" xsd:string
property_value: UBPROP:0000001 "Part of the heart comprised of thin serous membrane, composed of endothelial tissue, that lines the interior of the heart.[AAO]" xsd:string
is_a: UBERON:0002523 ! tunica intima
is_a: UBERON:0005983 ! heart layer
relationship: develops_from UBERON:0003084 ! heart primordium
relationship: develops_from UBERON:0007280 {evidence="definitional"} ! presumptive endocardium
relationship: has_part UBERON:0001986 ! endothelium
relationship: has_part UBERON:0006225 {source="UBERON"} ! endocardial tissue
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002166
name: endocardium of atrium
def: "Endocardium that is part of the atrium." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "atrial endocardium" EXACT []
synonym: "atrium endocardium" EXACT []
synonym: "atrium of heart endocardium" EXACT [OBOL:automatic]
synonym: "Cardiac atria endocardium" EXACT [OBOL:automatic]
synonym: "cardiac atrium endocardium" EXACT [OBOL:automatic]
synonym: "endocardium of atrium of heart" EXACT [OBOL:automatic]
synonym: "endocardium of Cardiac atria" EXACT [OBOL:automatic]
synonym: "endocardium of cardiac atrium" EXACT [OBOL:automatic]
synonym: "endocardium of heart atrium" EXACT [OBOL:automatic]
synonym: "heart atrium endocardium" EXACT [OBOL:automatic]
xref: FMA:7284
xref: MA:0000077
xref: SCTID:192001005
xref: TAO:0002169
xref: VHOG:0000606
xref: ZFA:0001614
is_a: UBERON:0002165 ! endocardium
relationship: part_of UBERON:0002081
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0002167
name: right lung
def: "Lung which consists of the right upper lobe, middle lobe and right lower lobe.[FMA]" [FMA:FMA, Wikipedia:Right_lung]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0001730
xref: EHDAA:4969
xref: EMAPA:17661
xref: FMA:7309
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Gray972.png/200px-Gray972.png
xref: MA:0000426
xref: ncithesaurus:Right_Lung
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA
xref: SCTID:361967000
xref: VHOG:0000301
is_a: UBERON:0002048 ! lung
relationship: in_right_side_of UBERON:0000170
intersection_of: UBERON:0002048 ! lung
intersection_of: in_right_side_of UBERON:0000170 ! pair of lungs
relationship: in_right_side_of UBERON:0000170 ! pair of lungs
[Term]
id: UBERON:0002168
name: left lung
def: "Lung which consists of the left upper lobe and left lower lobe.[FMA]" [FMA:FMA, Wikipedia:Left_lung]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0000943
xref: EHDAA:4947
xref: EMAPA:17653
xref: FMA:7310
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dd/Gray973.png/200px-Gray973.png
xref: MA:0000425
xref: ncithesaurus:Left_Lung
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA
xref: SCTID:361982005
xref: VHOG:0000618
is_a: UBERON:0002048 ! lung
relationship: in_left_side_of UBERON:0000170
intersection_of: UBERON:0002048 ! lung
intersection_of: in_left_side_of UBERON:0000170 ! pair of lungs
relationship: in_left_side_of UBERON:0000170 ! pair of lungs
[Term]
id: UBERON:0002169
name: alveolar sac
alt_id: UBERON:0008871
def: "the small terminal dilation of the alveolar ducts around which the alveoli form pocket-like clusters" [MP:0010902, Wikipedia:Alveolar_sac]
subset: uberon_slim
synonym: "air sac" RELATED [MP:0010902]
synonym: "pulmonary alveolar sac" EXACT [MP:0010902]
synonym: "sacculus alveolaris" EXACT [FMA:7317]
xref: BTO:0000061
xref: FMA:7317
xref: MA:0000418
xref: ncithesaurus:Alveolar_Sac
xref: OpenCyc:Mx4rwCvh75wpEbGdrcN5Y29ycA
xref: SCTID:361964007
is_a: UBERON:0000115 ! lung epithelium
is_a: UBERON:0000117 ! respiratory tube
is_a: UBERON:0007499 ! epithelial sac
relationship: part_of UBERON:0008874
intersection_of: UBERON:0007499 ! epithelial sac
intersection_of: part_of UBERON:0008874 ! pulmonary acinus
relationship: part_of UBERON:0006524 {source="MA"} ! alveolar system
relationship: part_of UBERON:0008874 {source="FMA"} ! pulmonary acinus
relationship: part_of UBERON:0008874 ! pulmonary acinus
[Term]
id: UBERON:0002170
name: upper lobe of right lung
def: "The lobe of the right lung that is closest to the head." [UBERON:cjm]
synonym: "lobus superior pulmonis dextri" EXACT [FMA:TA]
synonym: "right cranial lobe of lung" EXACT []
synonym: "right lung cranial lobe" EXACT [MA:0000429]
synonym: "right lung superior lobe" RELATED [MA:0000429]
synonym: "right upper lobe" EXACT [FMA:7333]
synonym: "right upper lobe of lung" EXACT [FMA:7333]
synonym: "superior lobe of right lung" EXACT [FMA:7333]
synonym: "upper lobe of right lung" EXACT [galen:UpperLobeOfRightLung]
xref: EHDAA2:0001747
xref: EHDAA:4987
xref: EMAPA:17991
xref: FMA:7333
xref: galen:UpperLobeOfRightLung
xref: MA:0000429
xref: ncithesaurus:Upper_Lobe_of_the_Right_Lung
xref: SCTID:361969002
xref: VHOG:0000859
is_a: UBERON:0006518 ! right lung lobe
is_a: UBERON:0008948 {source="FMA"} ! upper lobe of lung
relationship: part_of UBERON:0002167
intersection_of: UBERON:0008948 ! upper lobe of lung
intersection_of: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0002171
name: lower lobe of right lung
def: "The lobe of the right lung that is furtherst from the head." [UBERON:cjm]
synonym: "inferior lobe of right lung" EXACT [FMA:7337]
synonym: "lobus inferior pulmonis dextri" EXACT [FMA:7337, FMA:TA]
synonym: "lower lobe of right lung" EXACT [galen:LowerLobeOfRightLung]
synonym: "right caudal lobe of lung" EXACT []
synonym: "right lower lobe" EXACT [FMA:7337]
synonym: "right lower lobe of lung" EXACT [FMA:7337]
synonym: "right lung caudal lobe" RELATED [MA:0000428]
synonym: "right lung inferior lobe" RELATED [MA:0000428]
xref: EHDAA2:0001740
xref: EHDAA:4979
xref: EMAPA:17986
xref: FMA:7337
xref: galen:LowerLobeOfRightLung
xref: MA:0000428
xref: ncithesaurus:Lower_Lobe_of_the_Right_Lung
xref: SCTID:361976007
xref: VHOG:0000857
is_a: UBERON:0006518 ! right lung lobe
is_a: UBERON:0008949 {source="FMA"} ! lower lobe of lung
relationship: part_of UBERON:0002167
intersection_of: UBERON:0008949 ! lower lobe of lung
intersection_of: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0002172
name: alveolar atrium
synonym: "alveolus of lung atrium" EXACT [OBOL:automatic]
synonym: "atrium alveolare" EXACT []
synonym: "atrium of alveolus" EXACT []
synonym: "atrium of alveolus of lung" EXACT [OBOL:automatic]
synonym: "atrium of lung alveolus" EXACT [OBOL:automatic]
synonym: "lung alveolus atrium" EXACT [OBOL:automatic]
xref: FMA:7340
xref: MA:0000419
xref: SCTID:201806004
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002299 ! alveolus of lung
[Term]
id: UBERON:0002173
name: alveolar duct
def: "Alveolar ducts are the tiny end ducts of the branching airways that fill the lungs. Each lung holds approximately 1.5 to 2 million of them. The tubules divide into two or three alveolar sacs at the distal end. They are formed from the confluence openings of several alveoli. Distal terminations of alveolar ducts are atria which then end in alveolar sacs. In human anatomy, respiratory bronchioles exists proximal to the alveolar ducts. The epithelial lining consists of smooth muscle knobs covered by nonciliated, simple cuboidal cells. The smooth muscle constricts under parasympathetic innervation and relax under sympathetic innervation. [WP,unvetted]." [Wikipedia:Alveolar_duct]
subset: uberon_slim
xref: EMAPA:19183
xref: EMAPA:19185
xref: EMAPA:19187
xref: EMAPA:19189
xref: EMAPA:19191
xref: FMA:7341
xref: http://upload.wikimedia.org/wikipedia/commons/8/8f/Gray975.png
xref: MA:0000417
xref: ncithesaurus:Alveolar_Duct
xref: OpenCyc:Mx4rvXmfV5wpEbGdrcN5Y29ycA
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0006524 ! alveolar system
[Term]
id: UBERON:0002174
name: middle lobe of right lung
def: "In the human, the right lung is divided into three lobes (as opposed to two lobes on the left), superior, middle, and inferior, by two interlobular fissures: [WP,unvetted]." [Wikipedia:Middle_lobe_of_right_lung]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intermediate lobe of right lung" EXACT []
synonym: "lobus medius pulmonis dextri" EXACT [FMA:7383, FMA:TA]
synonym: "middle lobe of lung" BROAD [FMA:7383]
synonym: "right lung middle lobe" EXACT []
synonym: "right lung, middle lobe" EXACT []
synonym: "right middle lobe" EXACT []
synonym: "right middle lobe of lung" EXACT []
xref: EMAPA:17997
xref: FMA:7383
xref: galen:MiddleLobeOfRightLung
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Gray972.png/200px-Gray972.png
xref: MA:0000430
xref: ncithesaurus:Middle_Lobe_of_the_Right_Lung
xref: SCTID:361973004
is_a: UBERON:0006518 ! right lung lobe
is_a: UBERON:0008955 ! middle lobe/projection of lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0002175
name: intermediolateral nucleus
def: "The intermediolateral nucleus is a region of gray matter found in Rexed lamina VII of the spinal column. Rexed Lamina VII contains several well defined nuclei including the nucleus dorsalis, the intermediolateral cell column (lateral gray horn), and the sacral autonomic nucleus. It extends from the first thoracic through the third lumbar segment, and contains the autonomic motor neurons that give rise to the preganglionic fibers of the sympathetic system. [WP,unvetted]." [Wikipedia:Intermediolateral_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intermediolateral nucleus of spinal cord" EXACT []
synonym: "nucleus intermediolateralis medullae spinalis" EXACT [FMA:73915, FMA:TA]
synonym: "nucleus intermediolateralis medullae spinalis" RELATED LATIN [Wikipedia:Intermediolateral_nucleus]
synonym: "spinal cord intermediolateral nucleus" EXACT []
xref: FMA:73915
xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Medulla_spinalis_-_Substantia_grisea_-_English.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Medulla_spinalis_-_Substantia_grisea_-_English.svg/200px-Medulla_spinalis_-_Substantia_grisea_-_English.svg.png
xref: MA:0002753
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002176
name: lateral cervical nucleus
comment: This class was created automatically from a combination of ontologies
xref: FMA:73921
xref: MA:0002755
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord
[Term]
id: UBERON:0002177
name: right main bronchus
def: "The right main bronchus (or right primary bronchus, or right principal bronchus) is a bronchus of the respiratory system. It is wider, shorter, and more vertical in direction than the left. It is about 2.5 cm. long, and enters the right lung nearly opposite the fifth thoracic vertebra. The azygos vein arches over it from behind; and the right pulmonary artery lies at first below and then in front of it. About 2 cm. from its commencement it gives off a branch to the upper lobe of the right lung. This is termed the eparterial branch of the bronchus, because it arises above the right pulmonary artery. The bronchus now passes below the artery, and is known as the hyparterial branch; it divides into two branches for the middle and lower lobes. [WP,unvetted]." [Wikipedia:Right_main_bronchus]
subset: uberon_slim
synonym: "bronchus principalis dexter" RELATED LATIN [Wikipedia:Right_main_bronchus]
synonym: "right bronchus" EXACT []
synonym: "right primary bronchus" EXACT [Wikipedia:Right_main_bronchus]
synonym: "right principal bronchus" EXACT [Wikipedia:Right_main_bronchus]
xref: FMA:7395
xref: http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg
xref: MA:0001849
xref: ncithesaurus:Right_Main_Bronchus
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvoIuvJwpEbGdrcN5Y29ycA
xref: SCTID:361955002
is_a: UBERON:0002182 ! main bronchus
relationship: continuous_with UBERON:0002167
intersection_of: UBERON:0002182 ! main bronchus
intersection_of: continuous_with UBERON:0002167 ! right lung
relationship: continuous_with UBERON:0002167 ! right lung
[Term]
id: UBERON:0002178
name: left main bronchus
def: "The left main bronchus (or left primary bronchus, or left principal bronchus) is smaller in caliber but longer than the right, being nearly 5 cm long. It enters the root of the left lung opposite the sixth thoracic vertebra. It passes beneath the aortic arch, crosses in front of the esophagus, the thoracic duct, and the descending aorta, and has the left pulmonary artery lying at first above, and then in front of it. The left bronchus has no eparterial branch, and therefore it has been supposed by some that there is no upper lobe to the left lung, but that the so-called upper lobe corresponds to the middle lobe of the right lung. [WP,unvetted]." [Wikipedia:Left_main_bronchus]
subset: uberon_slim
synonym: "bronchus principalis sinister" RELATED LATIN [Wikipedia:Left_main_bronchus]
synonym: "left bronchus" EXACT []
synonym: "left primary bronchus" EXACT [Wikipedia:Left_main_bronchus]
synonym: "left principal bronchus" EXACT [Wikipedia:Left_main_bronchus]
xref: FMA:7396
xref: http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg
xref: MA:0001843
xref: ncithesaurus:Left_Main_Bronchus
xref: SCTID:361959008
is_a: UBERON:0002182 ! main bronchus
relationship: continuous_with UBERON:0002168
intersection_of: UBERON:0002182 ! main bronchus
intersection_of: continuous_with UBERON:0002168 ! left lung
relationship: continuous_with UBERON:0002168 ! left lung
[Term]
id: UBERON:0002179
name: lateral funiculus
def: "The most lateral of the bundles of the anterior nerve roots is generally taken as a dividing line that separates the antero-lateral region into two parts, viz. , an anterior funiculus, between the anterior median fissure and the most lateral of the anterior nerve roots; and a lateral funiculus, between the exit of these roots and the postero-lateral sulcus. [WP,unvetted]." [Wikipedia:Lateral_funiculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "funiculus lateralis medullae spinalis" RELATED LATIN [Wikipedia:Lateral_funiculus]
synonym: "lateral funiculus of spinal cord" EXACT []
synonym: "lateral white column of spinal cord" EXACT [FMA:74000]
xref: FMA:74000
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png
xref: SCTID:362434006
xref: TAO:0000533
xref: ZFA:0000533
is_a: UBERON:0006127 ! funiculus of spinal cord
[Term]
id: UBERON:0002180
name: ventral funiculus
def: "The most lateral of the bundles of the anterior nerve roots is generally taken as a dividing line that separates the antero-lateral region into two parts, viz. , an anterior funiculus, between the anterior median fissure and the most lateral of the anterior nerve roots; and a lateral funiculus, between the exit of these roots and the postero-lateral sulcus. [WP,unvetted]." [Wikipedia:Ventral_funiculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior funiculus" EXACT []
synonym: "anterior funiculus of spinal cord" EXACT []
synonym: "anterior white column of spinal cord" EXACT [FMA:74003]
synonym: "funiculus anterior medullae spinalis" EXACT [FMA:74003, FMA:TA]
synonym: "ventral funiculus of spinal cord" EXACT []
synonym: "ventral white column of spinal cord" EXACT [FMA:74003]
xref: FMA:74003
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png
xref: SCTID:362429007
xref: TAO:0000605
xref: ZFA:0000605
is_a: UBERON:0006127 ! funiculus of spinal cord
[Term]
id: UBERON:0002181
name: substantia gelatinosa
def: "Gelatinous-appearing material in the dorsal horn of the spinal cord, consisting chiefly of Golgi type II neurons and some larger nerve cells." [MESH:A.08.186.854.610.800, Wikipedia:Central_gelatinous_substance_of_spinal_cord_of_Rolando]
subset: uberon_slim
synonym: "central gelatinous substance of spinal cord" EXACT []
synonym: "gelatinous substance of dorsal horn of spinal cord" EXACT []
synonym: "gelatinous substance of posterior horn of spinal cord" EXACT []
synonym: "gelatinous substance of Rolando" EXACT [FMA:74019]
synonym: "substantia gelatinosa cornu posterioris medullae spinalis" EXACT [FMA:74019, FMA:TA]
xref: EV:0100318
xref: FMA:74019
xref: GAID:701
xref: MA:0001124
xref: MESH:A.08.186.854.610.800
xref: ncithesaurus:Substantia_Gelatinosa
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord
[Term]
id: UBERON:0002182
name: main bronchus
def: "The trachea (windpipe) divides into two main bronchi." [Wikipedia:Main_bronchus]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "bronchus principalis" EXACT []
synonym: "mainstem bronchus" EXACT []
synonym: "primary bronchus" EXACT []
synonym: "principal bronchus" EXACT []
xref: EFO:0000932
xref: EHDAA2:0001044
xref: EHDAA:3072
xref: EMAPA:16849
xref: FMA:7405
xref: MA:0000438
xref: ncithesaurus:Main_Bronchus
xref: OpenCyc:Mx4rvoIuvJwpEbGdrcN5Y29ycA
xref: SCTID:245508000
xref: VHOG:0000370
is_a: UBERON:0002185 ! bronchus
relationship: continuous_with UBERON:0002183 {source="FMA"} ! lobar bronchus
relationship: continuous_with UBERON:0003126 {source="FMA"} ! trachea
relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium
[Term]
id: UBERON:0002183
name: lobar bronchus
def: "The lobar bronchus is the major airway within the respiratory tree that starts by division of the principal bronchi on both sides and ends at the point of its own subdivision into tertiary or segmental bronchi[GO]." [GO:0060482, Wikipedia:Secondary_bronchus]
subset: organ_slim
subset: uberon_slim
synonym: "secondary bronchus" EXACT []
xref: EHDAA:4955
xref: EHDAA:4963
xref: EHDAA:4977
xref: EHDAA:4985
xref: EHDAA:4993
xref: EHDAA:8175
xref: EHDAA:8187
xref: EHDAA:8203
xref: EHDAA:8213
xref: EHDAA:8225
xref: EMAPA:17388
xref: EMAPA:17982
xref: EMAPA:17987
xref: EMAPA:17992
xref: EMAPA:17998
xref: FMA:7406
xref: http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Illu_quiz_lung05.jpg/200px-Illu_quiz_lung05.jpg
xref: MA:0000437
xref: ncithesaurus:Lobar_Bronchus
xref: OpenCyc:Mx4rwQMLXJwpEbGdrcN5Y29ycA
xref: SCTID:245509008
is_a: UBERON:0002185 ! bronchus
relationship: continuous_with UBERON:0002184 {source="FMA"} ! segmental bronchus
relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung
[Term]
id: UBERON:0002184
name: segmental bronchus
def: "The tertiary bronchi (also known as the segmental bronchi) arise from the secondary bronchi. The respiratory epithelium lining their lumen is surrounded by a layer of smooth muscle. This layer is composed of two ribbons of smooth muscle that spiral in opposite directions. The smooth muscle layer is surrounded by irregular plates of hyaline cartilage which help maintain the patency of the airway. Each of the tertiary bronchi serves a specific bronchopulmonary segment. There are 10 tertiary bronchi in the right lung, and eight in the left. The tertiary bronchi get smaller and divide into primary bronchioles. [WP,unvetted]." [Wikipedia:Segmental_bronchus]
subset: organ_slim
subset: uberon_slim
synonym: "tertiary bronchus" EXACT []
xref: EHDAA:7043
xref: EHDAA:7049
xref: EHDAA:7058
xref: EHDAA:7064
xref: EHDAA:7070
xref: FMA:7407
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Illu_quiz_lung05.jpg/200px-Illu_quiz_lung05.jpg
xref: MA:0000439
xref: ncithesaurus:Segmental_Bronchus
xref: OpenCyc:Mx4rwQGFgZwpEbGdrcN5Y29ycA
xref: SCTID:245513001
xref: VHOG:0001446
is_a: UBERON:0002185 ! bronchus
relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung
[Term]
id: UBERON:0002185
name: bronchus
def: "A portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus]
subset: organ_slim
subset: uberon_slim
synonym: "bronchi" EXACT PLURAL []
synonym: "bronchial tissue" RELATED [BTO:0001340]
synonym: "bronchial trunk" EXACT []
xref: BTO:0001340
xref: EFO:0000932
xref: EV:0100041
xref: FMA:7409
xref: GAID:346
xref: http://upload.wikimedia.org/wikipedia/commons/1/18/Respiratory_system_complete_numbered.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/18/Respiratory_system_complete_numbered.svg/200px-Respiratory_system_complete_numbered.svg.png
xref: MA:0000436
xref: MAT:0000133
xref: MESH:A.04.411.125
xref: MIAA:0000133
xref: ncithesaurus:Bronchus
xref: SCTID:181215002
xref: VHOG:0000262
xref: XAO:0000121
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0007196 ! tracheobronchial tree
[Term]
id: UBERON:0002186
name: bronchiole
def: "the first airway branch that no longer contains cartilage; it is a branch of the bronchi[GO]." [Wikipedia:Bronchiole]
subset: uberon_slim
synonym: "bronchiolus" RELATED [BTO:0002375]
synonym: "lobular bronchiole" EXACT [FMA:7410]
xref: BTO:0002375
xref: EHDAA:8171
xref: EHDAA:8183
xref: EHDAA:8199
xref: EHDAA:8221
xref: FMA:7410
xref: http://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0000422
xref: ncithesaurus:Bronchiole
xref: OpenCyc:Mx4rvl9iDpwpEbGdrcN5Y29ycA
xref: SCTID:278982001
xref: VHOG:0000675
is_a: UBERON:0000072 ! segment of respiratory tract
relationship: part_of UBERON:0002048 {source="MA"} ! lung
relationship: part_of UBERON:0007196 {source="FMA"} ! tracheobronchial tree
relationship: part_of UBERON:0010368 {source="ncut"} ! pulmonary lobule
[Term]
id: UBERON:0002187
name: terminal bronchiole
def: "A terminal bronchiole is a bronchiole at the end of the conducting zone. At the transition into the respiratory zone, alveoli become present. The terminal bronchiole is the most distal segment of the conducting zone. Each of the terminal bronchioles divides to form respiratory bronchioles which contain a small number of alveoli. Terminal bronchioles are lined with simple cuboidal epithelium containing Clara cells. Terminal bronchioles contain a limited number of ciliated cells and no goblet cells. Clara cells are non-ciliated, rounded protein secreting cells. Their secretions are a nonsticky, proteinaceous compound to maintain the airway in the smallest bronchioles. The secretion, called surfactant, reduces surface tension allowing for bronchioles to expand during inspiration and keeping the bronchioles from collapsing during expiration. Clara cells, a stem cell of the respiratory system, produce enzymes that detoxify substances dissolved in the respiratory fluid. [WP,unvetted]." [Wikipedia:Terminal_bronchiole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bronchioli terminalis" RELATED LATIN [Wikipedia:Terminal_bronchiole]
synonym: "bronchiolus terminalis" EXACT []
xref: BTO:0003223
xref: FMA:7411
xref: http://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0000424
xref: ncithesaurus:Terminal_Bronchiole
xref: OpenCyc:Mx4rwS7IU5wpEbGdrcN5Y29ycA
xref: SCTID:278981008
is_a: UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0002188
name: respiratory bronchiole
def: "The respiratory bronchioles are interrupted by alveoli which are thin walled evaginations. Alveolar ducts are distal continuations of the respiratory bronchioles. [WP,unvetted]." [Wikipedia:Respiratory_bronchiole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bronchioli respiratorii" RELATED LATIN [Wikipedia:Respiratory_bronchiole]
synonym: "bronchiolus respiratorius" EXACT []
xref: BTO:0003222
xref: FMA:7412
xref: http://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0000423
xref: ncithesaurus:Respiratory_Bronchiole
xref: OpenCyc:Mx4rwS6ki5wpEbGdrcN5Y29ycA
xref: SCTID:128517006
is_a: UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0002189
name: outer cortex of kidney
comment: This class was created automatically from a combination of ontologies
synonym: "outer renal cortex" EXACT []
xref: FMA:74285
xref: MA:0001649
is_a: UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0002190
name: subcutaneous adipose tissue
synonym: "fatty layer of subcutaneous tissue" EXACT [FMA:74315]
synonym: "panniculus adiposus (tela subcutanea)" EXACT [FMA:74315, FMA:TA]
synonym: "panniculus adiposus telae subcutaneae" EXACT [FMA:74315, FMA:TA]
xref: BTO:0004042
xref: FMA:74315
xref: MA:0000473
is_a: UBERON:0001013 ! adipose tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002072 ! hypodermis
[Term]
id: UBERON:0002191
name: subiculum
def: "The subiculum is the most inferior component of the hippocampal formation. It lies between the entorhinal cortex and the CA1 subfield of the hippocampus proper. It receives input from CA1 and entorhinal cortical layer III pyramidal neurons and is the main output of the hippocampus. The pyramidal neurons send projections to the nucleus accumbens, septal nuclei, prefrontal cortex, lateral hypothalamus, nucleus reuniens, mammillary nuclei, entorhinal cortex and amygdala. The pyramidal neurons in the subiculum exhibit transitions between two modes of action potential output: bursting and single spiking. The transitions between these two modes is thought to be important for routing information out of the hippocampus. It is the site responsible for ictal activity in some cases of human epilepsy. It has also been implicated in working memory and drug addiction. [WP,unvetted]." [Wikipedia:Subiculum]
comment: ABA:SUB is part of the retrohippocampal region, along with the entorhinal area. this is in the hippocampal formation but not the hippocampal region
subset: uberon_slim
synonym: "gyrus parahippocampalis" RELATED [BTO:0003087]
synonym: "subicular cortex" EXACT [NIF_GrossAnatomy:birnlex_1305]
synonym: "subiculum cornu ammonis" RELATED [BTO:0003087]
synonym: "subiculum hippocampi" EXACT [FMA:74414]
xref: ABA:SUB
xref: BM:Tel-Cx-SB
xref: BTO:0003087
xref: FMA:74414
xref: http://upload.wikimedia.org/wikipedia/commons/3/31/Hippocampus_%28brain%29.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Hippocampus_%28brain%29.jpg/200px-Hippocampus_%28brain%29.jpg
xref: MA:0000960
xref: ncithesaurus:Subiculum
xref: NIF_GrossAnatomy:birnlex_1305
xref: SCTID:369097009
property_value: "spatially_disjoint_from" UBERON:0001953
property_value: "spatially_disjoint_from" UBERON:0002728
property_value: "spatially_disjoint_from" UBERON:0004683
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0002421 {source="NIF_GrossAnatomy"} ! hippocampal formation
[Term]
id: UBERON:0002192
name: ventricular system choroidal fissure
def: "The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn[ZFA]." [ISBN:0815318960, ZFA:0001075]
comment: Usage notes: not to be confused with optic fissure. the choroidal fissure is a subarachnoid space (via subarachnoid fissure in FMA). AO notes: Most ontologies appear to have switched to using less confusing primary terms for optic and choroidal fissues. Still need to check FMA - two possible terms? CARO notes: is this a groove or a space or a line? Structure notes: relate to lateral ventricle?
subset: vertebrate_core
synonym: "chorioid fissure" RELATED [FMA:74512]
synonym: "chorioidal fissure" RELATED [FMA:74512]
synonym: "choroid fissure" RELATED INCONSISTENT [FMA:74512, TAO:0001075]
synonym: "choroid invagination" RELATED [EHDAA2:0000250]
synonym: "choroidal fissure of lateral ventricle" EXACT [FMA:83715]
synonym: "lateral ventricle choroid fissure" EXACT [EHDAA2:0000250]
synonym: "ventricular system choroid fissure" EXACT [VHOG:0001756]
xref: EHDAA2:0000250
xref: EMAPA:17768
xref: FMA:74512
xref: FMA:83715
xref: ncithesaurus:Choroidal_Fissure
xref: TAO:0001075
xref: VHOG:0001756
xref: ZFA:0001075
is_a: UBERON:0000464 ! anatomical space
disjoint_from: UBERON:0005412 ! optic fissure
relationship: part_of UBERON:0005358 ! ventricle of nervous system
[Term]
id: UBERON:0002193
name: hemolymphoid system
def: "Anatomical cluster consisting of the hematopoietic system and the lymphoid system, or its analogs." []
synonym: "haemolymphoid system" RELATED []
synonym: "hematolymphoid system" EXACT []
synonym: "lymphomyeloid complex" EXACT []
xref: EHDAA2:0004615
xref: EMAPA:18534
xref: EMAPA:18765
xref: FMA:74562
xref: MA:0000013
is_a: UBERON:0000467 {source="MA"} ! anatomical system
[Term]
id: UBERON:0002194
name: capsule of lymph node
def: "Capsule surrounding lymph node composed of connective tissue with some plain muscle fibers. from its internal surface are given off a number of membranous processes or trabeculae, consisting, in man, of connective tissue, with a small admixture of plain muscle fibers; but in many of the lower animals composed almost entirely of involuntary muscle[WP]." [Wikipedia:Lymph_node_capsule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lymph node capsule" EXACT []
xref: FMA:74604
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Lymphknoten_%28Schwein%29.jpg/200px-Lymphknoten_%28Schwein%29.jpg
xref: MA:0000739
xref: ncithesaurus:Lymph_Node_Capsule
xref: SCTID:327532004
is_a: UBERON:0003893 ! capsule
relationship: surrounds UBERON:0000029
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0000029 ! lymph node
relationship: has_part UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002195
name: trabecula of lymph node
def: "Membranous process coming from capsule of lymph node[WP]." [Wikipedia:Lymph_node_trabeculae]
comment: This class was created automatically from a combination of ontologies
synonym: "lymph node trabecula" EXACT []
synonym: "lymph node trabeculum" EXACT []
xref: FMA:74605
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray598.png/200px-Gray598.png
xref: MA:0000746
xref: ncithesaurus:Lymph_Node_Trabecula
is_a: UBERON:0000440 ! trabecula
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002196
name: adenohypophysis
def: "The glandular, anterior lobe of the pituitary gland. The anterior pituitary regulates several physiological processes including stress, growth, and reproduction[WP]. The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mammalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish[ZFA]." [Wikipedia:Adenohypophysis, ZFIN:curator]
comment: note that BTO may contain an error here. Also note we may need to introduce taxon-specific developmental relationships: "While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathke’s pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head"[NBK53175]
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior hypophysis" EXACT [ZFA:0001282]
synonym: "anterior lobe (hypophysis)" EXACT []
synonym: "anterior lobe of hypophysis" EXACT []
synonym: "anterior lobe of pituitary" EXACT []
synonym: "anterior lobe of pituitary gland" EXACT []
synonym: "anterior pituitary" EXACT []
synonym: "anterior pituitary gland" RELATED [BTO:0000040]
synonym: "lobus anterior (glandula pituitaria)" EXACT [FMA:74627, FMA:TA]
synonym: "lobus anterior hypophysis" EXACT [FMA:74627, FMA:TA]
synonym: "pituitary gland, anterior lobe" EXACT []
xref: AAO:0010540
xref: BM:AHy
xref: BTO:0000040
xref: BTO:0000496
xref: EFO:0000230
xref: EHDAA2:0000109
xref: EMAPA:17514
xref: FMA:74627
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray1181.png/200px-Gray1181.png
xref: MA:0000177
xref: MESH:A.06.407.747.608
xref: ncithesaurus:Anterior_Lobe_of_the_Pituitary_Gland
xref: NIF_GrossAnatomy:birnlex_1581
xref: SCTID:245532007
xref: TAO:0001282
xref: VHOG:0000141
xref: ZFA:0001282
property_value: UBPROP:0000001 "Region of the pituitary gland derived from the buccal protrusion consisting of three regions.[AAO]" xsd:string
property_value: UBPROP:0000001 "The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mamalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish. Herzog et al, 2004.[TAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0005356 {source="NBK53175", gci_relation="part_of", exception="teleost", gci_filler="NCBITaxon:32523"} ! Rathke's pouch
relationship: develops_from UBERON:0009122 {source="NBK53175", source="ZFA"} ! adenohypophyseal placode
relationship: part_of UBERON:0000007 ! pituitary gland
[Term]
id: UBERON:0002197
name: median eminence of neurohypophysis
def: "The median eminence is part of the inferior boundary for the hypothalamus part of the human brain. A small swelling on the tuber cinereum posterior to the infundibulum - atop the pituitary stalk - the median eminence lies in the area roughly bounded on its posterolateral region by the cerebral peduncles, and on its anterolateral region by the optic chiasm. The median eminence is one of the seven areas of the brain devoid of a blood-brain barrier. [WP,unvetted]." [Wikipedia:Median_eminence]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "eminentia mediana hypothalami" EXACT [FMA:74634, FMA:TA]
synonym: "eminentia mediana hypothalami" RELATED LATIN [Wikipedia:Median_eminence]
synonym: "median eminence" EXACT []
synonym: "median eminence of hypothalamus" EXACT []
synonym: "median eminence of posterior lobe of pituitary gland" EXACT []
synonym: "median eminence of tuber cinereum" EXACT []
xref: AAO:0010539
xref: BM:ME
xref: BTO:0001954
xref: EHDAA2:0001080
xref: EHDAA:7540
xref: EMAPA:17521
xref: FMA:74634
xref: GAID:463
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000859
xref: MESH:A.06.407.747.734.500
xref: NIF_GrossAnatomy:birnlex_925
xref: SCTID:369121004
xref: VHOG:0001179
property_value: UBPROP:0000001 "Region of the neurohypophysis.[AAO]" xsd:string
is_a: UBERON:0002784 ! regional part of diencephalon
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005408 ! circumventricular organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002198 ! neurohypophysis
[Term]
id: UBERON:0002198
name: neurohypophysis
def: "comprises the posterior lobe of the pituitary gland and is part of the endocrine system[WP]." [Wikipedia:Neurohypophysis]
comment: Editor note - request magnocellular cell from CL. Request oxytocin secretion from GO. Notes: "The hypophysis or pituitary gland is derived, in part from an ectodermal outpocketing of the stomodeum (Rathke's Pouch) and in part from the floor of the diencephalon" [http://syllabus.med.unc.edu/courseware/embryo_images/]
subset: uberon_slim
subset: vertebrate_core
synonym: "infundibular process" EXACT [FMA:74628]
synonym: "lobus nervosus neurohypophysis" EXACT [FMA:74628, FMA:TA]
synonym: "lobus posterior (glandula pituitaria)" EXACT [FMA:74628, FMA:TA]
synonym: "lobus posterior hypophysis" EXACT [FMA:74628, FMA:TA]
synonym: "neural lobe" EXACT [FMA:74628]
synonym: "neural lobe of pituitary" EXACT [NIF_GrossAnatomy:birnlex_1586]
synonym: "neural lobe of pituitary gland" EXACT [FMA:74628]
synonym: "neurohypophysis" EXACT []
synonym: "pituitary gland, posterior lobe" EXACT []
synonym: "posterior lobe of pituitary" EXACT []
synonym: "posterior lobe of pituitary gland" EXACT [FMA:74628]
synonym: "posterior pituitary" EXACT []
synonym: "posterior pituitary gland" RELATED [BTO:0000937]
xref: AAO:0010537
xref: BM:NY
xref: BTO:0000937
xref: EHDAA2:0001271
xref: EHDAA:7536
xref: EMAPA:17519
xref: FMA:74628
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Pituitary_gland_representation.PNG/200px-Pituitary_gland_representation.PNG
xref: MA:0000178
xref: MESH:A.06.407.747.734
xref: ncithesaurus:Posterior_Lobe_of_the_Pituitary_Gland
xref: NIF_GrossAnatomy:birnlex_1586
xref: SCTID:245527006
xref: TAO:0001271
xref: VHOG:0000142
xref: ZFA:0001271
property_value: UBPROP:0000001 "The infundibular part of the pituitary gland consisting of two regions.[AAO]" xsd:string
is_a: UBERON:0002784 ! regional part of diencephalon
is_a: UBERON:0003296 ! gland of diencephalon
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010134 {source="MA"} ! secretory circumventricular organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0002346 ! neurectoderm
relationship: develops_from UBERON:0006250 {source="EHDAA2"} ! infundibular recess of 3rd ventricle
relationship: part_of UBERON:0000007 {source="ZFA"} ! pituitary gland
[Term]
id: UBERON:0002199
name: integument
def: "The dermis, epidermis and hypodermis." [Wikipedia:Integument]
comment: Usage notes: in FMA intergument = skin+superficial fascia(hypodermis), skin=dermis+epidermis+hair_nail. Note that the definition provided here excludes the more general sense of the term 'integument' used in invertebrates. Note that the VSAO class appears to include adnexa by its definition.
subset: uberon_slim
subset: vertebrate_core
synonym: "dermal system" RELATED [BTO:0000634]
synonym: "dermoid system" RELATED [BTO:0000634]
synonym: "Hautsystem" RELATED [BTO:0000634]
synonym: "integumentum commune" EXACT [FMA:74657, FMA:TA]
synonym: "skin" RELATED []
synonym: "tegument" RELATED [BTO:0000634]
synonym: "the integument" EXACT [FMA:74657]
xref: AAO:0000239
xref: BTO:0000634
xref: EHDAA2:0001844
xref: FMA:74657
xref: galen:Integument
xref: MESH:A.17.815
xref: TAO:0000368
xref: VSAO:0000029
xref: ZFA:0000368
property_value: UBPROP:0000001 "Anatomical system that protects the body from damage, comprising the skin and its appendages.[AAO]" xsd:string
property_value: UBPROP:0000001 "Surface structure that is the outer protective covering of the body.[VSAO]" xsd:string
property_value: UBPROP:0000001 "The outer protective barrier that separates the animal from its aquatic environment. Le Guellec et al, 2004.[TAO]" xsd:string
is_a: UBERON:0003102 ! surface structure
relationship: has_part UBERON:0002072 ! hypodermis
relationship: has_part UBERON:0002097 ! skin of body
relationship: part_of UBERON:0002416 ! integumental system
relationship: surrounds UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0002200
name: vasculature of head
def: "Vasculature that is part of a head [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "adult head vascular network" EXACT [OBOL:automatic]
synonym: "adult head vasculature" EXACT [OBOL:automatic]
synonym: "cranial vasculature" EXACT []
synonym: "head vascular network" EXACT [OBOL:automatic]
synonym: "head vasculature" RELATED []
synonym: "vascular network of adult head" EXACT [OBOL:automatic]
synonym: "vascular network of head" EXACT [OBOL:automatic]
synonym: "vasculature of adult head" EXACT [OBOL:automatic]
xref: EFO:0003656
xref: FMA:74710
xref: TAO:0001267
xref: XAO:0004152
xref: ZFA:0001267
is_a: UBERON:0002049 ! vasculature
relationship: part_of UBERON:0000033
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0002201
name: vasculature of trunk
def: "A vasculature that is part of a trunk [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "torso vascular network" EXACT [OBOL:automatic]
synonym: "torso vasculature" EXACT [OBOL:automatic]
synonym: "trunk vascular network" EXACT [OBOL:automatic]
synonym: "trunk vasculature" EXACT []
synonym: "vascular network of torso" EXACT [OBOL:automatic]
synonym: "vascular network of trunk" EXACT [OBOL:automatic]
synonym: "vasculature of torso" EXACT [OBOL:automatic]
xref: FMA:74712
xref: TAO:0005024
xref: ZFA:0005024
is_a: UBERON:0002049 ! vasculature
relationship: part_of UBERON:0002100
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0002202
name: submucosa of trachea
comment: This class was created automatically from a combination of ontologies
synonym: "submucosa of windpipe" EXACT [OBOL:automatic]
synonym: "trachea submucosa" EXACT []
synonym: "tracheal submucosa" EXACT []
synonym: "windpipe submucosa" EXACT [OBOL:automatic]
xref: BTO:0002115
xref: FMA:7472
xref: MA:0001860
xref: ncithesaurus:Trachea_Submucosa
xref: SCTID:4419000
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004777 ! respiratory system submucosa
relationship: part_of UBERON:0003126
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0003126 ! trachea
relationship: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0002203
name: vasculature of eye
def: "Vasculature that is part of the eye region." [https://sourceforge.net/tracker/?func=detail&aid=3489658&group_id=76834&atid=994726, OBOL:automatic]
comment: not part of the eye in ZFA. Note this changed to a blood vessel in ZFA
subset: vertebrate_core
synonym: "eye vascular network" EXACT [OBOL:automatic]
synonym: "eye vasculature" RELATED []
synonym: "ocular blood vessel" EXACT [ZFA:0007057]
synonym: "ocular vasculature" EXACT []
synonym: "optic vasculature" RELATED []
synonym: "vascular network of eye" EXACT [OBOL:automatic]
xref: FMA:74743
xref: SCTID:123846009
xref: TAO:0007057
xref: ZFA:0007057
is_a: UBERON:0002200 ! vasculature of head
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0006876 ! vasculature of organ
relationship: part_of UBERON:0000019
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye
[Term]
id: UBERON:0002204
name: musculoskeletal system
def: "Anatomical system that consists of the muscular and skeletal systems." [VSAO:0000031, Wikipedia:Musculoskeletal_system]
subset: uberon_slim
synonym: "musculo-skeletal system" EXACT []
xref: AAO:0010546
xref: EV:0100139
xref: FMA:7482
xref: GAID:98
xref: MA:0002418
xref: MESH:A.02
xref: ncithesaurus:Musculoskeletal_System
xref: OpenCyc:Mx4rQRpVNgAKEdyHxgDggVfs8g
xref: SCTID:278858007
xref: VHOG:0001275
xref: VSAO:0000031
xref: XAO:0000168
property_value: UBPROP:0000001 "Anatomical system that provides locomotion and physical support to the organism.[AAO]" xsd:string
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: has_developmental_contribution_from UBERON:0000926 ! mesoderm
relationship: has_part UBERON:0000383 ! musculature of body
[Term]
id: UBERON:0002205
name: manubrium of sternum
def: "broad, upper part of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[WP]." [Wikipedia:Manubrium]
comment: May be cartilage in some species.
subset: uberon_slim
synonym: "manubrium" BROAD []
synonym: "manubrium of sternum" EXACT []
synonym: "manubrium sterni" EXACT [EMAPA:18723]
synonym: "sternal manubrium" EXACT [MA:0001332]
xref: EMAPA:18723
xref: FMA:7486
xref: GAID:247
xref: http://upload.wikimedia.org/wikipedia/commons/2/23/Gray116.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray116.png/200px-Gray116.png
xref: MA:0001332
xref: MESH:A.02.835.232.904.766.442
xref: ncithesaurus:Sternal_Manubrium
xref: OpenCyc:Mx4rvXOLAZwpEbGdrcN5Y29ycA
xref: SCTID:182014008
property_value: "serially_homologous_to" UBERON:0002208
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005181 ! thoracic segment organ
is_a: UBERON:0010363 {source="Kardong"} ! endochondral element
disjoint_from: UBERON:0006722 ! manubrium of malleus
relationship: develops_from UBERON:0011301 ! manubrium sternum pre-cartilage condensation
relationship: part_of UBERON:0000975 ! sternum
[Term]
id: UBERON:0002206
name: mammillary body
def: "The mammilary body is a protrusion at the posterior end of the hypothalamus that contains hypothalamic nuclei[GO]." [Wikipedia:Mammillary_body]
subset: uberon_slim
subset: vertebrate_core
synonym: "corpus mamillare" EXACT [ZFA:0000334]
synonym: "corpus mamillare" RELATED LATIN [Wikipedia:Mammillary_body]
xref: ABA:MBO
xref: FMA:74877
xref: GAID:652
xref: http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1180.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray1180.png/200px-Gray1180.png
xref: MA:0000174
xref: MESH:A.08.186.211.730.385.357.362.500
xref: ncithesaurus:Mamillary_Body
xref: NIF_GrossAnatomy:birnlex_865
xref: SCTID:279306001
xref: TAO:0000334
xref: ZFA:0000334
property_value: "spatially_disjoint_from" UBERON:0001935
property_value: "spatially_disjoint_from" UBERON:0002035
property_value: "spatially_disjoint_from" UBERON:0002634
property_value: "spatially_disjoint_from" UBERON:0002706
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000349 {source="GO"} ! limbic system
relationship: part_of UBERON:0002272 {source="ABA"} ! medial zone of hypothalamus
relationship: part_of UBERON:0002770 {source="GO definition"} ! posterior hypothalamic region
[Term]
id: UBERON:0002207
name: xiphoid process
def: "A cartilaginous extension to the distal part of the sternum." [https://sourceforge.net/tracker/?func=detail&aid=3153001&group_id=76834&atid=1205376, Wikipedia:Xiphoid_process]
comment: this class may represent a mixed bony-cartilage element, or it may be the superclass of either purely cartilage or purely ossified elements. Taxon notes: usually ossified in the adult human. By age 15 to 29, the xiphoid usually fuses to the body of the sternum with a fibrous joint. Unlike the synovial articulation of major joints, this is non-movable. Much the way the first seven ribs articulate with the sternum, the cartilage in the celiac plexus joins on the xiphoid process, reinforcing it, and indirectly attaches the costal cartilage to the sternum. [WP,unvetted]
subset: uberon_slim
synonym: "metasternum" RELATED [Wikipedia:Xiphoid_process]
synonym: "processus xiphoideus" RELATED [Wikipedia:Xiphoid_process]
synonym: "processus xiphoideus" RELATED LATIN [Wikipedia:Xiphoid_process]
synonym: "xiphisternum" EXACT [Wikipedia:Xiphoid_process]
synonym: "xiphoid" RELATED [Wikipedia:Xiphoid_process]
synonym: "xiphoid process" EXACT [FMA:7488]
synonym: "xiphoid process" RELATED [Wikipedia:Xiphoid_process]
synonym: "xiphoid process of sternum" EXACT []
synonym: "xiphoideus" RELATED [Wikipedia:Xiphoid_process]
synonym: "xiphosternal junction" RELATED [Wikipedia:Xiphoid_process]
synonym: "xyphoid" RELATED [Wikipedia:Xiphoid_process]
xref: FMA:7488
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray117.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray117.png/200px-Gray117.png
xref: MA:0001334
xref: ncithesaurus:Xiphoid_Process
xref: SCTID:272711000
property_value: "serially_homologous_to" UBERON:0002208
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
relationship: part_of UBERON:0000975 ! sternum
[Term]
id: UBERON:0002208
name: sternebra
def: "one of the bony segments of the sternum[TFD]." [http://medical-dictionary.thefreedictionary.com/sternebra, Wikipedia:Sternebra]
comment: Note that some definitions state that this a segment of the primordial sternum.
subset: uberon_slim
synonym: "sternebral bone" RELATED [EMAPA:18724]
xref: EMAPA:18724
xref: FMA:7489
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/12/Illu_thoracic_cage.jpg/200px-Illu_thoracic_cage.jpg
xref: MA:0001333
xref: SCTID:95955004
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003827 ! thoracic segment bone
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0006295 ! sternebral bone pre-cartilage condensation
relationship: part_of UBERON:0000975 {source="MA"} ! sternum
[Term]
id: UBERON:0002209
name: fibrous joint
def: "Nonsynovial joint in which the articulating bones or cartilages are connected by ligaments. Examples: sagittal suture, inferior tibiofibular syndesmosis, gomphosis.[FMA]" [FMA:FMA, Wikipedia:Fibrous_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "articulatio fibrosa" EXACT []
synonym: "junctura fibrosa" RELATED LATIN [Wikipedia:Fibrous_joint]
xref: AEO:0000178
xref: EHDAA2:0003178
xref: FMA:7492
xref: MA:0000321
xref: SCTID:37772004
xref: TAO:0005156
xref: ZFA:0005156
property_value: UBPROP:0000001 "A joint where fibrous tissue such as ligament connects two calcified tissues.[TAO]" xsd:string
is_a: UBERON:0011134 {source="FMA"} ! nonsynovial joint
[Term]
id: UBERON:0002210
name: syndesmosis
def: "Fibrous joint in which the articulating bones or cartilages of the vertebral column and the limbs as well as articulating ossicles, are connected by skeletal ligaments or membranes. Examples: Intervertebral syndesmosis, inferior tibiofibular joint.[FMA]" [FMA:FMA, Wikipedia:Syndesmosis]
subset: uberon_slim
xref: FMA:7494
xref: MA:0001500
xref: SCTID:89358004
is_a: UBERON:0002209 ! fibrous joint
is_a: UBERON:0002213 ! cartilaginous joint
[Term]
id: UBERON:0002211
name: nerve root
comment: we make nerve root continuous_with nerve to avoid inconsistencies with the spatial disjointness constraint between PNS and CNS, with nerves part_of CNS. FMA has segment of nerve with subtypes: segment of sympathetic trunk, nerve root, nerve rootlet, nerve root proper
subset: uberon_slim
xref: BTO:0000883
xref: FMA:5981
xref: ncithesaurus:Nerve_Root
xref: SCTID:362295007
is_a: UBERON:0000063 ! organ segment
relationship: continuous_with UBERON:0001021 ! nerve
[Term]
id: UBERON:0002212
name: macula of saccule of membranous labyrinth
def: "The saccule is the smaller of the two vestibular sacs; it is globular in form, and lies in the recessus sphæricus near the opening of the scala vestibuli of the cochlea. Its anterior part exhibits an oval thickening, the macula of saccule (or saccular macula), to which are distributed the saccular filaments of the acoustic nerve. [WP,unvetted]." [Wikipedia:Macula_of_saccule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "macula of membranous labyrinth saccule" EXACT [OBOL:automatic]
synonym: "macula of saccule" EXACT []
synonym: "macula of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "macula saccule" EXACT [ZFA:0007000]
synonym: "macula sacculi" EXACT [FMA:74944, FMA:TA]
synonym: "macula sacculi" RELATED LATIN [Wikipedia:Macula_of_saccule]
synonym: "membranous labyrinth saccule macula" EXACT [OBOL:automatic]
synonym: "saccular macula" EXACT [ZFA:0007000]
synonym: "saccular macula of membranous labyrinth" EXACT []
synonym: "saccular maculs" RELATED []
synonym: "saccule macula" EXACT [OBOL:automatic]
synonym: "saccule of membranous labyrinth macula" EXACT [OBOL:automatic]
synonym: "sacculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic]
xref: FMA:74944
xref: MA:0001201
xref: ncithesaurus:Macula_of_Saccule
xref: SCTID:362572004
xref: TAO:0007000
xref: XAO:0004136
xref: ZFA:0007000
is_a: UBERON:0000054 ! macula
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001854
intersection_of: UBERON:0000054 ! macula
intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth
relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth
[Term]
id: UBERON:0002213
name: cartilaginous joint
def: "Nonsynovial joint in which the articulating bones or cartilages are connected by cartilage. Examples: Spheno-occipital synchondrosis, first sternocostal joint, pubic symphysis.[FMA]" [FMA:FMA, Wikipedia:Cartilaginous_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "articulatio cartilaginea" EXACT []
synonym: "junctura cartilaginea" RELATED LATIN [Wikipedia:Cartilaginous_joint]
xref: FMA:7496
xref: MA:0000320
xref: SCTID:58442004
xref: TAO:0005155
xref: ZFA:0005155
is_a: UBERON:0011134 {source="FMA"} ! nonsynovial joint
[Term]
id: UBERON:0002214
name: macula of utricle of membranous labyrinth
def: "The portion of the utricle which is lodged in the recess forms a sort of pouch or cul-de-sac, the floor and anterior wall of which are thickened, and form the macula of utricle (or utricular macula), which receives the utricular filaments of the vestibulocochlear nerve. [WP,unvetted]." [Wikipedia:Macula_of_utricle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "macula of membranous labyrinth utricle" EXACT [OBOL:automatic]
synonym: "macula of utricle" EXACT []
synonym: "macula of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "macula utricle" EXACT [ZFA:0000030]
synonym: "macula utriculi" EXACT [FMA:74960, FMA:TA]
synonym: "macula utriculi" RELATED LATIN [Wikipedia:Macula_of_utricle]
synonym: "membranous labyrinth utricle macula" EXACT [OBOL:automatic]
synonym: "utricle macula" EXACT [OBOL:automatic]
synonym: "utricle of membranous labyrinth macula" EXACT [OBOL:automatic]
synonym: "utricular macula" RELATED []
synonym: "utriculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic]
xref: EFO:0003474
xref: FMA:74960
xref: http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg
xref: MA:0001203
xref: ncithesaurus:Macula_of_Utricle
xref: SCTID:362568003
xref: TAO:0000030
xref: ZFA:0000030
is_a: UBERON:0000054 ! macula
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001853
intersection_of: UBERON:0000054 ! macula
intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth
relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth
[Term]
id: UBERON:0002215
name: synchondrosis
def: "Cartilaginous joint in which the articulating bones or cartilages are connected by hyaline cartilage. Examples: spheno-occipital synchondrosis, first sternocostal joint.[FMA]" [FMA:FMA, Wikipedia:Synchondrosis]
comment: Editor's note: WP considers epiphyseal plates as subtypes of this // consider adding link to hyaline cartilage
subset: uberon_slim
synonym: "cartilago epiphysialis" EXACT [FMA:7497, FMA:TA]
synonym: "epiphysial cartilage" RELATED [FMA:7497]
synonym: "primary cartilaginous joint" EXACT [FMA:7497]
xref: FMA:7497
xref: http://upload.wikimedia.org/wikipedia/commons/7/76/Gray297.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray297.png/200px-Gray297.png
xref: MA:0001501
xref: SCTID:42903008
is_a: UBERON:0002209 {source="MA"} ! fibrous joint
is_a: UBERON:0002213 ! cartilaginous joint
[Term]
id: UBERON:0002216
name: symphysis
def: "Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint.[FMA]" [FMA:FMA, Wikipedia:Symphysis]
comment: Editors note: consider adding fibrocartilage class
subset: uberon_slim
synonym: "secondary cartilaginous joint" EXACT [FMA:7498]
xref: FMA:7498
xref: http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray298.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray298.png/200px-Gray298.png
xref: MA:0001504
xref: SCTID:1584001
is_a: UBERON:0002209 {source="MA"} ! fibrous joint
is_a: UBERON:0002213 {source="FMA"} ! cartilaginous joint
[Term]
id: UBERON:0002217
name: synovial joint
def: "Joint in which the articulating bones or cartilages are connected by an articular capsule which encloses a synovial membrane and a synovial cavity. Examples: Temporomandibular joint, knee joint.[FMA]" [FMA:FMA, Wikipedia:Synovial_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "articulatio synoviale" EXACT []
synonym: "diarthrodial joints" RELATED [ZFA:0005153]
synonym: "diarthroses" EXACT [ZFA:0005153]
xref: AEO:0000183
xref: EHDAA2:0003183
xref: FMA:7501
xref: galen:SynovialJoint
xref: MA:0000322
xref: OpenCyc:Mx4rv2bBV5wpEbGdrcN5Y29ycA
xref: SCTID:113234001
xref: TAO:0005153
xref: ZFA:0005153
property_value: UBPROP:0000001 "Is a joint that is located at the point of contact of articulating bones allowing movement. The joint has a capsule containing synovial fluid surrounding the articulating bone surfaces.[TAO]" xsd:string
is_a: UBERON:0000982 ! skeletal joint
disjoint_from: UBERON:0011134 ! nonsynovial joint
[Term]
id: UBERON:0002218
name: tympanic ring
def: "a C-shaped membranous bone that provides physical support to the tympanic membrane. The tympanic ring develops sequentially from an initial primordium in the first branchial arch growing in a circumferential fashion around the first pharyngeal cleft into the second branchial arch (Mallo and Gridley, 1996). In most mammals, the tympanic ring exists only during embryonic life, when it coordinates proper development and positioning of the eardrum (see below), and then becomes integrated into the temporal bone[PMID]." [MP:0000030, PMID:11237469]
comment: AO notes: in FMA, the tympanic ring is an anatomical line. Howevever PMID:11237469 states: "the tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane". Taxon notes: check amphibians - in AAO "Funnel-like ring structure located lateral to the ventral ramus of the squamosal, beneath the skin; it provides support to the tympanic membrane". Gene notes: Gsc and Prx1 are essential for tympanic ring development
synonym: "tympanic annulus" RELATED []
synonym: "tympanic membrane annulus" RELATED []
xref: AAO:0000615
xref: EMAPA:19197
xref: MA:0001225
property_value: UBPROP:0000001 "Funnel-like ring structure located lateral to the ventral ramus of the squamosal, beneath the skin; it provides support to the tympanic membrane.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of plectral apparatus (AAO:0000443)[AAO]" xsd:string
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0002514 {source="PMID:11237469"} ! intramembranous bone
is_a: UBERON:0003457 ! head bone
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear
[Term]
id: UBERON:0002219
name: subfornical organ
def: "Group of neurons situated on the ventral surface of the fornix at the level of the foramen of Munro in the third ventricle (adapted from Wikipedia via NIF)." [NIF_GrossAnatomy:nlx_anat_100314, Wikipedia:Subfornical_organ]
comment: Function notes: induces drinking behavior after stimulation with angiotensin II[MESH].
subset: uberon_slim
synonym: "organum subfornicale" RELATED LATIN [Wikipedia:Subfornical_organ]
xref: ABA:SFO
xref: FMA:75260
xref: GAID:795
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray715.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png
xref: MA:0000940
xref: MESH:A.08.713.840
xref: NIF_GrossAnatomy:nlx_anat_100314
property_value: "spatially_disjoint_from" UBERON:0001934
property_value: "spatially_disjoint_from" UBERON:0002034
property_value: "spatially_disjoint_from" UBERON:0002625
property_value: "spatially_disjoint_from" UBERON:0002689
property_value: "spatially_disjoint_from" UBERON:0002690
property_value: "spatially_disjoint_from" UBERON:0007626
is_a: UBERON:0002663 {source="MA"} ! septal nuclear complex
is_a: UBERON:0002791 ! regional part of telencephalon
is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ
[Term]
id: UBERON:0002221
name: fontanelle
def: "Anatomical structure that is a membranous gap between bones of the skull[TAO]. In humans: Fontanelles are soft spots on a baby's head which, during birth, enable the bony plates of the skull to flex, allowing the child's head to pass through the birth canal. The ossification of the bones of the skull cause the fontanelles to close over by a child's second birthday. The closures eventually form the sutures of the neurocranium. Although there are the two anterior and posterior fontanelles, there are two more fontanelles of interest, the mastoid fontanelle, and the sphenoidal fontanelle[WP]." [Wikipedia:Fontanelle]
subset: uberon_slim
subset: vertebrate_core
synonym: "fontanel" EXACT []
synonym: "fonticuli cranii" RELATED LATIN [Wikipedia:Fontanelle]
xref: FMA:75438
xref: http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray197.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray197.png/200px-Gray197.png
xref: MA:0001465
xref: ncithesaurus:Fontanelle
xref: SCTID:272681004
xref: TAO:0001738
xref: ZFA:0005536
property_value: UBPROP:0000001 "Anatomical structure that is a membranous gap between bones of the skull.[TAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: adjacent_to UBERON:0003685 ! cranial suture
relationship: part_of UBERON:0001703 {source="MA", source="ZFA"} ! neurocranium
[Term]
id: UBERON:0002222
name: perichondrium
def: "Fibrous connective tissue that surrounds cartilage." [VSAO:0000036, Wikipedia:Perichondrium]
subset: uberon_slim
subset: vertebrate_core
synonym: "cartilage connective tissue" RELATED []
synonym: "perichondral region of cartilage" RELATED []
synonym: "perichondral region of cartilage element" RELATED []
xref: AAO:0010445
xref: BTO:0005089
xref: FMA:75446
xref: MA:0003008
xref: SCTID:11881003
xref: TAO:0001643
xref: VSAO:0000036
xref: XAO:0004049
xref: ZFA:0001634
property_value: UBPROP:0000001 "Portion of connective tissue which surrounds cartilage.[TAO]" xsd:string
is_a: UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0007844 ! cartilaginous element
[Term]
id: UBERON:0002223
name: endolymphatic sac
def: "From the posterior wall of the saccule a canal, the ductus endolymphaticus, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch, the endolymphatic sac, on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. Studies suggest that the endolymphatic duct and endolymphatic sac perform both absorptive and secretory, as well as phagocytic and immunodefensive,functions . [WP,unvetted]." [Wikipedia:Endolymphatic_sac]
comment: Editor's note: EHDAA2 structure is embryonic
subset: uberon_slim
synonym: "saccus endolymphaticus" EXACT [AAO:0000551]
synonym: "saccus endolymphaticus" RELATED LATIN [Wikipedia:Endolymphatic_sac]
xref: AAO:0000551
xref: EHDAA2:0000441
xref: EHDAA:7761
xref: EMAPA:17593
xref: FMA:75639
xref: GAID:887
xref: MA:0001188
xref: MESH:A.09.246.631.909.957.360.701
xref: SCTID:279810008
xref: VHOG:0000791
is_a: UBERON:0006937 ! inner ear epithelium
is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac
relationship: develops_from UBERON:0006226 {source="EHDAA2"} ! endolymphatic appendage
relationship: part_of UBERON:0001846 {source="VHOG"} ! internal ear
[Term]
id: UBERON:0002224
name: thoracic cavity
def: "Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]." [FMA:7565, Wikipedia:Thoracic_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cavitas thoracis" RELATED LATIN [Wikipedia:Thoracic_cavity]
synonym: "cavity of chest" EXACT []
synonym: "cavity of thorax" EXACT []
synonym: "chest cavity" EXACT []
synonym: "pectoral cavity" EXACT []
synonym: "space of thoracic compartment" EXACT [FMA:7565]
xref: FMA:7565
xref: GAID:93
xref: http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray846.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png
xref: MA:0000032
xref: MESH:A.01.911.800
xref: ncithesaurus:Thoracic_Cavity
xref: OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg
xref: OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA
xref: SCTID:243949006
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0002225
name: costal arch
def: "The costal margin, sometimes referred to as the costal arch, is the medial margin formed by the false ribs -- specifically, from the eighth rib to the tenth rib." [Wikipedia:Costal_margin]
comment: todo - split? check part_of relationship
synonym: "arcus costae" RELATED [Wikipedia:Costal_margin]
synonym: "arcus costalis" RELATED LATIN [Wikipedia:Costal_margin]
synonym: "costal margin" RELATED [Wikipedia:Costal_margin]
synonym: "subcostal arch" RELATED [Wikipedia:Costal_margin]
xref: FMA:7569
xref: FMA:7570
xref: http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray115.png
xref: MA:0001396
xref: ncithesaurus:Costal_Arch
xref: SCTID:367767002
is_a: UBERON:0006800 {source="FMA"} ! anatomical line
relationship: part_of UBERON:0002228 {source="MA"} ! rib
[Term]
id: UBERON:0002226
name: basilar membrane of cochlea
def: "a stiff structural element that separates two liquid-filled tubes that run along the coil of the cochlea, the scala media and the scala tympani[WP]." [Wikipedia:Basilar_membrane]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "basilar membrane" EXACT [MA:0001190]
synonym: "lamina basilaris ductus cochlearis" RELATED LATIN [Wikipedia:Basilar_membrane]
xref: FMA:75706
xref: GAID:872
xref: http://upload.wikimedia.org/wikipedia/commons/9/9b/Organ_of_corti.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/0/0c/Cochlea-crosssection.png/250px-Cochlea-crosssection.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Organ_of_corti.svg/200px-Organ_of_corti.svg.png
xref: MA:0001190
xref: MESH:A.09.246.631.246.125
xref: ncithesaurus:Basilar_Membrane
xref: NIF_GrossAnatomy:birnlex_2521
xref: SCTID:362574003
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005764 {source="Wikipedia"} ! acellular membrane
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: adjacent_to UBERON:0001864 ! scala tympani
relationship: adjacent_to UBERON:0002295 ! scala media
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002227
name: spiral organ of cochlea
def: "The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti]
comment: Todo - check XAO, taxon constraints
subset: uberon_slim
synonym: "basilar papilla" RELATED [BTO:0001691]
synonym: "cochlear spiral organ" EXACT []
synonym: "Corti's organ" RELATED [BTO:0001691]
synonym: "organ of corti" RELATED []
synonym: "organum spirale" RELATED [BTO:0001691]
synonym: "organum spirale" RELATED LATIN [Wikipedia:Organ_of_Corti]
synonym: "spiral organ" EXACT []
synonym: "spiral organ of corti" EXACT []
xref: AAO:0011018
xref: BTO:0001691
xref: EFO:0001364
xref: EMAPA:19061
xref: EMAPA:19151
xref: EV:0100364
xref: FMA:75715
xref: GAID:772
xref: http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png
xref: MA:0001193
xref: ncithesaurus:Organ_of_Corti
xref: ncithesaurus:Spiral_Organ_of_Corti
xref: NIF_GrossAnatomy:birnlex_2526
xref: SCTID:279841009
xref: VHOG:0001567
xref: XAO:0003145
property_value: UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002228
name: rib
def: "An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses. They protect and support internal organs. In most vertebrates, ribs surround the chest. they enable lungs to expand by expanding the chest, they also protect the lungs, heart, and other internal organs of the thorax. In some animals, especially snakes, ribs may provide support and protection for the entire body." [Wikipedia:Rib, ZFIN:curator]
comment: Humans have 24 ribs (12 pairs). The first seven sets of ribs, known as "true ribs", are directly attached to the sternum through the costal cartilage. The following five sets are known as "false ribs", three of these sharing a common cartilaginous connection to the sternum, while the last two (eleventh and twelfth ribs) are termed floating ribs (costae fluitantes) or vertebral ribs. They are attached to the vertebrae only, and not to the sternum or cartilage coming off of the sternum. Some people are missing one of the two pairs of floating ribs, while others have a third pair. Rib removal is the surgical excision of ribs for therapeutic or cosmetic reasons. In fish, there are often two sets of ribs attached to the vertebral column. One set, the dorsal ribs, are found in the dividing septum between the upper and lower parts of the main muscle segments, projecting roughly sideways from the vertebral column. The second set, of ventral ribs arise from the vertebral column just below the dorsal ribs, and enclose the lower body, often joining at the tips. Not all species possess both types of rib, with the dorsal ribs being most commonly absent. Sharks, for example, have no dorsal ribs, and only very short ventral ribs, while lampreys have no ribs at all. In some teleosts, there may be additional rib-like bones within the muscle mass. Tetrapods, however, only ever have a single set of ribs which are probably homologous with the dorsal ribs of fishes. In the early tetrapods, every vertebra bore a pair of ribs, although those on the thoracic vertebrae are typically the longest. The sacral ribs were stout and short, since they formed part of the pelvis, connecting the backbone to the hip bones.[1] In most subsequent forms, many of these early ribs have been lost, and in living amphibians and reptiles, there is great variation in rib structure and number. For example, turtles have only eight pairs of ribs, which are developed into a bony or cartilagenous carapace and plastron, while snakes have numerous ribs running along the full length of their trunk. Frogs typically have no ribs, aside from a sacral pair, which form part of the pelvis.[1]. In birds, ribs are present as distinct bones only on the thoracic region, although small fused ribs are present on the cervical vertebrae. The thoracic ribs of birds possess a wide projection to the rear; this uncinate process is an attachment for the shoulder muscles.[1]. Mammals usually also only have distinct ribs on the thoracic vertebra, although fixed cervical ribs are also present in monotremes. In marsupials and placental mammals, the cervical and lumbar ribs are found only as tiny remnants fused to the vertebrae, where they are referred to as transverse processes. In general, the structure and number of the true ribs in humans is similar to that in other mammals. Unlike reptiles, caudal ribs are never found in mammals.[1]
subset: uberon_slim
subset: vertebrate_core
synonym: "dorsal rib" RELATED []
synonym: "pleural rib" RELATED []
xref: AAO:0000545
xref: EFO:0003066
xref: EMAPA:18010
xref: FMA:7574
xref: GAID:245
xref: galen:Rib
xref: MA:0000315
xref: MESH:A.02.835.232.904.567
xref: ncithesaurus:Rib
xref: OpenCyc:Mx4rvVjNoZwpEbGdrcN5Y29ycA
xref: SCTID:302523002
xref: TAO:0000538
xref: VHOG:0001154
xref: ZFA:0000538
property_value: UBPROP:0000001 "Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs.[TAO]" xsd:string
property_value: UBPROP:0000001 "Endochondral, rodlike element that articulates with the transverse process and parapophysis (double-headed rib), or with the transverse process only (single-headed rib); it extends into the body wall and provides a site for muscle attachment.[AAO]" xsd:string
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003459 ! chest bone
is_a: UBERON:0004120 ! mesoderm-derived structure
disjoint_from: UBERON:0010898 ! gastralium
relationship: develops_from UBERON:0006288 {evidence="definitional"} ! rib cartilage condensation
relationship: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
relationship: part_of UBERON:0002412 ! vertebra
relationship: part_of UBERON:0003252 ! rib cage
[Term]
id: UBERON:0002229
name: interparietal bone
def: "the bone of the cranium that lies above and anterior to the occipital bone in some mammals." [MP:0000077, Wikipedia:Interparietal_bone]
comment: Taxon notes: rarely present in humans[PMID:3654370]. Editor notes: consider splitting classes for inter-parietal and post-parietal. postparietals paired in reptiles, fused in mammals.
synonym: "inca bone" RELATED [Wikipedia:Interparietal_bone]
synonym: "inter-parietal bone" EXACT [EMAPA:19017]
synonym: "interparietal" EXACT [EHDAA:9530]
synonym: "os interparietale" RELATED [Wikipedia:Interparietal_bone]
synonym: "ossicle of Goethe" RELATED [Wikipedia:Interparietal_bone]
synonym: "post-parietal bone" RELATED [VHOG:0001327]
synonym: "postparietal" RELATED [VHOG:0001327]
synonym: "postparietal bone" RELATED [VHOG:0001327]
xref: EHDAA:9530
xref: EMAPA:19017
xref: FMA:75748
xref: MA:0001467
xref: SCTID:369438005
xref: VHOG:0001327
property_value: "homologous_to" UBERON:0004865
is_a: UBERON:0011164 ! neurocranium bone
relationship: anterior_to UBERON:0001676 ! occipital bone
relationship: develops_from UBERON:0006251 {evidence="definitional"} ! interparietal bone primordium
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0003113 {source="Kardong", notes="vault series"} ! dermatocranium
relationship: part_of UBERON:0004339 {source="PMID:11523816"} ! vault of skull
[Term]
id: UBERON:0002230
name: head of rib
def: "The head of the rib is the end of a rib closest to the vertebral column, with which it articulates with. It is marked by a kidney-shaped articular surface, divided by a horizontal crest into two facets for articulation with the depression formed on the bodies of two adjacent thoracic vertebrae; the upper facet is the smaller; to the crest is attached the interarticular ligament. [WP,unvetted]." [Wikipedia:Head_of_rib]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "caput costae" RELATED LATIN [Wikipedia:Head_of_rib]
synonym: "rib head" EXACT []
xref: FMA:7575
xref: http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray122.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray122.png/200px-Gray122.png
xref: MA:0001415
xref: ncithesaurus:Rib_Head
xref: SCTID:263358001
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0005175 ! chest organ
relationship: connected_to UBERON:0002412 ! vertebra
relationship: part_of UBERON:0010388 {source="PMID:15906248"} ! proximal segment of rib
[Term]
id: UBERON:0002231
name: body of rib
comment: This class was created automatically from a combination of ontologies
synonym: "rib body" EXACT []
synonym: "rib shaft" EXACT []
synonym: "shaft of rib" EXACT []
xref: FMA:7577
xref: MA:0001416
xref: ncithesaurus:Rib_Shaft
xref: SCTID:263361000
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0005175 ! chest organ
relationship: part_of UBERON:0010388 {source="PMID:15906248"} ! proximal segment of rib
[Term]
id: UBERON:0002232
name: olfactory gland
def: "Bowman's glands (aka olfactory glands, glands of Bowman) are situated in the olfactory mucosa, beneath the olfactory epithelium, in the lamina propria, a connective tissue also containing fibroblasts, blood vessels, and bundles of fine axons from the olfactory neurons. The structure of the Bowman's glands consists of an acinus in the lamina propria and a secretory duct going out through the olfactory epithelium. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles.[2] Bowman's glands might secrete proteins such as Lysozyme, amylase and IgA similarly to serous glands. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP]." [Wikipedia:Olfactory_glands]
subset: organ_slim
synonym: "Bowman's gland" RELATED []
synonym: "glandulae olfactoriae" RELATED LATIN [Wikipedia:Olfactory_glands]
synonym: "olfactory gland of Bowman" EXACT []
xref: AAO:0010162
xref: BTO:0001697
xref: FMA:75801
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray857.png
xref: MA:0000287
xref: SCTID:368891001
property_value: UBPROP:0000001 "Multicellular mucous glands of the olfactory epithelium, present only in adults.[AAO]" xsd:string
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0002530 ! gland
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001997 ! olfactory epithelium
[Term]
id: UBERON:0002233
name: tectorial membrane of cochlea
def: "The tectorial membrane (TM) is one of two acellular gels in the cochlea of the inner ear, the other being the basilar membrane (BM). The TM is located above the sulcus spiralis internus and the spiral organ of Corti and extends along the longitudinal length of the cochlea parallel to the BM. Radially the TM is divided into three zones, the limbal, middle and marginal zones. Of these the limbal zone is the thinnest (transversally) and overlies the auditory teeth of Huschke with its inside edge attached to the spiral limbus. The marginal zone is the thickest (transversally) and is divided from the middle zone by Hensen's Stripe. It overlies the sensory inner hair cells and electrically-motile outer hair cells of the organ of Corti and during acoustic stimulation stimulates the inner hair cells through fluid coupling, and the outer hair cells via direct connection to their tallest stereocilia." [Wikipedia:Tectorial_membrane_%28cochlea%29]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tectorial membrane" EXACT []
synonym: "tectorial membrane of spiral organ of cochlea" EXACT []
xref: FMA:75805
xref: GAID:876
xref: MA:0001199
xref: MESH:A.09.246.631.246.292.906
xref: ncithesaurus:Tectorial_Membrane
xref: NIF_GrossAnatomy:birnlex_2531
xref: SCTID:368960006
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005764 {source="Wikipedia"} ! acellular membrane
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: attaches_to UBERON:0002276 {notes="limbal zone"} ! lamina of spiral limbus
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002234
name: proximal phalanx of finger
def: "A proximal phalanx that is part of a finger [Obol]." [OBOL:automatic]
synonym: "hand proximal phalanx" EXACT [MA:0001395]
synonym: "proximal phalanx of fore digit" EXACT []
synonym: "proximal phalanx of hand" EXACT []
synonym: "proximal phalanx of manus" EXACT []
xref: FMA:75816
xref: MA:0001395
xref: ncithesaurus:Proximal_Phalanx_of_Hand
xref: SCTID:181986000
is_a: UBERON:0001436 ! phalanx of finger
is_a: UBERON:0004302 ! proximal phalanx
relationship: part_of UBERON:0002389
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit
relationship: proximally_connected_to UBERON:0002374 ! metacarpal bone
[Term]
id: UBERON:0002235
name: tubercle of rib
def: "The tubercle of a rib is an eminence on the posterior surface, at the junction of the neck and body of the rib, and nearer the lower than the upper border. It consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrae to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs[WP]." [Wikipedia:Tubercle_(rib)]
subset: uberon_slim
synonym: "rib tubercle" EXACT []
xref: FMA:7583
xref: MA:0001417
xref: ncithesaurus:Rib_Tubercle
xref: SCTID:361104005
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005813 ! tubercle
relationship: part_of UBERON:0002231
intersection_of: UBERON:0005813 ! tubercle
intersection_of: part_of UBERON:0002231 ! body of rib
disjoint_from: UBERON:0011652 ! dorsal head of rib
relationship: part_of UBERON:0002231 {source="FMA"} ! body of rib
relationship: part_of UBERON:0002231 ! body of rib
relationship: part_of UBERON:0010388 {source="PMID:15906248"} ! proximal segment of rib
[Term]
id: UBERON:0002236
name: costal cartilage
def: "The costal cartilages are bars of hyaline cartilage which serve to prolong the ribs forward and contribute very materially to the elasticity of the walls of the thorax. [WP,unvetted]." [Wikipedia:Costal_cartilage]
subset: uberon_slim
synonym: "cartilagines costales" RELATED LATIN [Wikipedia:Costal_cartilage]
synonym: "cartilago costalis" RELATED [BTO:0001721]
synonym: "sternal cartilage" RELATED [BTO:0001721]
xref: BTO:0001721
xref: FMA:7591
xref: http://upload.wikimedia.org/wikipedia/commons/c/cc/Gray315.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cc/Gray315.png/200px-Gray315.png
xref: MA:0000106
xref: ncithesaurus:Costal_Cartilage
xref: OpenCyc:Mx4rwP1g3pwpEbGdrcN5Y29ycA
xref: SCTID:244703004
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003572 ! chest connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002228 ! rib
[Term]
id: UBERON:0002237
name: true rib
def: "A rib that is ventrally connected to the sternum." [ISBN10:0073040584, Wikipedia:True_ribs]
synonym: "costa vera" EXACT []
synonym: "costae verae" RELATED PLURAL [Wikipedia:True_ribs]
xref: FMA:7592
xref: http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray115.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray115.png/200px-Gray115.png
xref: MA:0001419
xref: OpenCyc:Mx4rv4-iWJwpEbGdrcN5Y29ycA
xref: SCTID:368044009
is_a: UBERON:0002228 ! rib
relationship: connected_to UBERON:0000975
intersection_of: UBERON:0002228 ! rib
intersection_of: connected_to UBERON:0000975 ! sternum
disjoint_from: UBERON:0002238 ! false rib
relationship: connected_to UBERON:0000975 ! sternum
[Term]
id: UBERON:0002238
name: false rib
def: "A rib that is not directly ventrally connected to the sternum." [ISBN10:0073040584, Wikipedia:False_rib]
subset: uberon_slim
synonym: "asternal ribs" RELATED [Wikipedia:False_ribs]
synonym: "costa spuria" EXACT []
synonym: "costae spuriae" RELATED PLURAL [Wikipedia:False_ribs]
xref: FMA:7594
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray115.png/200px-Gray115.png
xref: MA:0001398
xref: OpenCyc:Mx4rwLzzTZwpEbGdrcN5Y29ycA
xref: SCTID:368045005
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0002239
name: floating rib
def: "A rib that is not connected to sternum or sternal cartilage." [ISBN10:0073040584, Wikipedia:Floating_rib]
subset: uberon_slim
synonym: "costa fluitante" EXACT []
synonym: "costae fluctuantes" RELATED LATIN [Wikipedia:Floating_rib]
synonym: "costae fluitantes" RELATED LATIN [Wikipedia:Floating_rib]
xref: FMA:7595
xref: http://upload.wikimedia.org/wikipedia/commons/f/f7/Skeleton_woman_back.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Skeleton_woman_back.png/200px-Skeleton_woman_back.png
xref: MA:0001399
xref: OpenCyc:Mx4rvaPCWZwpEbGdrcN5Y29ycA
xref: SCTID:368046006
is_a: UBERON:0002238 ! false rib
[Term]
id: UBERON:0002240
name: spinal cord
def: "Elongated, approximately cylindrical part of the central nervous system that lies in the vertebral canal and from which the spinal nerves emerge." [OMD:spinal+cord, Wikipedia:Spinal_cord]
comment: TODO: add superclass to unify with VNC?
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "medulla spinalis" RELATED [BTO:0001279]
synonym: "medulla spinalis" RELATED LATIN [Wikipedia:Spinal_cord]
synonym: "spinal cord structure" RELATED [ZFA:0000075]
synonym: "spinal medulla" RELATED [BTO:0001279]
xref: AAO:0010151
xref: BM:SpC
xref: BTO:0001279
xref: EFO:0000110
xref: EHDAA2:0001255
xref: EHDAA:2863
xref: EMAPA:17577
xref: EMAPA:17700
xref: EV:0100316
xref: FMA:7647
xref: GAID:695
xref: http://upload.wikimedia.org/wikipedia/commons/5/58/Spinal_cord_direv.svg
xref: MA:0000216
xref: MAT:0000183
xref: MESH:A.08.186.854
xref: MIAA:0000183
xref: ncithesaurus:Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_1709
xref: OpenCyc:Mx4rvVjjk5wpEbGdrcN5Y29ycA
xref: SCTID:180959008
xref: TAO:0000075
xref: VHOG:0000601
xref: XAO:0000020
xref: ZFA:0000075
property_value: "spatially_disjoint_from" UBERON:0000955
property_value: UBPROP:0000001 "Part of the central nervous system which descends from the hindbrain within the vertebral column.[AAO]" xsd:string
is_a: UBERON:0000489 ! cavitated compound organ
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005174 ! back organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003076 ! posterior neural tube
relationship: develops_from UBERON:0006241 {evidence="definitional"} ! future spinal cord
relationship: has_developmental_contribution_from UBERON:0003853 {evidence="definitional"} ! spinal cord neural crest
relationship: part_of UBERON:0001017 ! central nervous system
relationship: part_of UBERON:0001137 ! dorsum
[Term]
id: UBERON:0002241
name: chondrocranium
def: "Endoskeletal elements that encase the brain, nose, inner ear[cjm]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]." [http://medical-dictionary.thefreedictionary.com/chondrocranium, Wikipedia:Chondrocranium]
comment: Editor/AO notes: we follow the standard evolutionary classification and treat this as endoskeletal. This means what MA calls 'chondrocranium' must in fact be neurocranium, as it includes parts of the dermatocranium (e.g. frontal, parietal). Taxon notes: covers the brain dorsally in chondrichthyans
subset: vertebrate_core
synonym: "calvarium" RELATED [MA:0000317]
synonym: "neurocranium" RELATED INCONSISTENT [MA:0000317]
xref: AAO:0010169
xref: EHDAA2:0000243
xref: EMAPA:17681
xref: TAO:0001424
xref: VHOG:0000288
xref: ZFA:0001424
property_value: UBPROP:0000001 "Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones.[AAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones.[TAO]" xsd:string
is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system
relationship: overlaps UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0002242
name: nucleus pulposus
def: "a jelly-like connective tissue in the middle of the spinal disc. It is the remnant of the notochord. It functions to distribute hydraulic pressure in all directions within each disc under compressive loads. The nucleus pulposus consists of chondrocytes, collagen fibrils, and proteoglycan aggrecans that have hyaluronic long chains which attract water. Attached to each hyaluronic chain are side chains of chondroitin sulfate and keratan sulfate[WP]." [Wikipedia:Nucleus_pulposus]
comment: AO notes: we group two FMA classes together
subset: uberon_slim
synonym: "nucleus propulsus" RELATED [Wikipedia:Nucleus_pulposus]
synonym: "nucleus propulsus of intervertebral disk" RELATED [Wikipedia:Nucleus_pulposus]
synonym: "nucleus pulposus (diskus intervertebralis)" EXACT [FMA:13550]
synonym: "pulpy nucleus" EXACT []
xref: BTO:0003626
xref: FMA:13550
xref: FMA:76703
xref: http://upload.wikimedia.org/wikipedia/commons/d/d9/Cervical_vertebra_english.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d9/Cervical_vertebra_english.png/200px-Cervical_vertebra_english.png
xref: MA:0000112
xref: SCTID:316586000
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0002328 {editor="mah", source="ISBN10:0073040584", source="Wikipedia"} ! notochord
relationship: part_of UBERON:0001066 ! intervertebral disk
[Term]
id: UBERON:0002243
name: cutaneous vein
def: "one of a number of veins in the subcutaneous tissue that empty into deep veins" [http://www.thefreedictionary.com/cutaneous+vein]
comment: AO notes: GAT in FMA
xref: FMA:76720
xref: MA:0002098
xref: ncithesaurus:Cutaneous_Vein
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0002072 ! hypodermis
[Term]
id: UBERON:0002244
name: premaxilla
alt_id: UBERON:0002253
def: "One of the bones of the upper jaw situated between and in front of the maxillae[VHOG]." [VHOG:0000426, Wikipedia:Incisive_bone, Wikipedia:Premaxilla]
comment: Editors note: requires checking embryonic vs adult; isa fetal organ part in FMA; adult bone of upper jaw in AAO and ZFA; split. Note that we have loops if we add develops_from UBERON:0005620 {source="EHDAA2"}
subset: uberon_slim
subset: vertebrate_core
synonym: "incisive bone" RELATED [Wikipedia:Incisive_bone]
synonym: "os incisivum" RELATED [Wikipedia:Premaxilla]
synonym: "premaxilla bone" RELATED [Wikipedia:Premaxilla]
synonym: "premaxillae" EXACT PLURAL []
synonym: "premaxillary bone" RELATED [Wikipedia:Premaxilla]
xref: AAO:0000461
xref: EHDAA:6962
xref: EHDAA:8033
xref: EMAPA:17641
xref: EMAPA:17933
xref: EMAPA:19033
xref: FMA:76869
xref: FMA:77231
xref: http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray160.png
xref: MA:0001493
xref: SCTID:308884009
xref: TAO:0000567
xref: VHOG:0000426
xref: ZFA:0000567
property_value: UBPROP:0000001 "Dermal bone that forms the anteriormost element of the upper jaw. It articulates with the maxilla posterodorsally and its antimere medially. The premaxilla is paired.[TAO]" xsd:string
property_value: UBPROP:0000001 "Paired, intramembranous bones located at the anterior end of the skull; they form the anterior-most segment of the maxillary arch.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps inter-premaxillary joint (TAO:0001950)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps mesethmoid-premaxillary joint (TAO:0001676)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps premaxillary-maxillary joint (TAO:0002260)[TAO]" xsd:string
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0011597 ! bone of upper jaw
relationship: develops_from UBERON:0011628 ! early premaxilla
relationship: part_of UBERON:0003113 {source="Kardong"} ! dermatocranium
relationship: part_of UBERON:0003277 {source="VHOG"} ! skeleton of upper jaw
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0002245
name: hemisphere of cerebellum
def: "A paired regions of the cerebellum that lie outside and lateral to the central vermis[MP]. The cerebellum consists of three parts, a median and two lateral, which are continuous with each other, and are substantially the same in structure. The median portion is constricted, and is called the vermis, from its annulated appearance which it owes to the transverse ridges and furrows upon it; the lateral expanded portions are named the hemispheres. The lateral hemisphere is considered the portion of the cerebellum to develop most recently. [WP,unvetted]." [MP:0009959, Wikipedia:Cerebellar_hemisphere]
subset: uberon_slim
synonym: "cerebellar hemisphere" EXACT []
synonym: "cerebellum hemisphere" EXACT []
synonym: "Hemisphere of cerebellum [H II - H X]" EXACT []
synonym: "hemispherium cerebelli" RELATED LATIN [Wikipedia:Cerebellar_hemisphere]
synonym: "hemispherium cerebelli [h ii - h x]" EXACT [FMA:76925, FMA:TA]
xref: ABA:HEM
xref: FMA:76925
xref: http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png
xref: MA:0000200
xref: ncithesaurus:Hemisphere_of_the_Cerebellum
xref: NIF_GrossAnatomy:birnlex_1575
xref: SCTID:362411002
is_a: UBERON:0002749 ! regional part of cerebellar cortex
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0002246
name: dorsal thoracic nucleus
def: "." [Wikipedia:Clarke's_column]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Clarke's column" EXACT []
synonym: "Clarke's nucleus" EXACT []
synonym: "nucleus thoracicus posterior" EXACT [FMA:77023, FMA:TA]
synonym: "posterior thoracic nucleus" EXACT []
synonym: "spinal cord dorsal nucleus" EXACT []
synonym: "Stilling-Clarke's column" EXACT []
synonym: "Stilling-Clarke's nucleus" EXACT []
xref: FMA:77023
xref: MA:0001121
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord
[Term]
id: UBERON:0002247
name: uterine horn
def: "The uterine horns are the points where the uterus and the uterine tubes meet. It is one of the points of attachment for the round ligament of uterus (the other being the mons pubis). The uterine horns are far more prominent in other animals than they are in humans[WP,unvetted]." [Wikipedia:Uterine_horns]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0004235
xref: EFO:0000975
xref: EMAPA:18985
xref: FMA:77053
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Illu_female_pelvis.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Illu_female_pelvis.jpg/200px-Illu_female_pelvis.jpg
xref: MA:0000393
xref: SCTID:245480007
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0002248
name: transverse pericardial sinus
def: "The passage between the venous and arterial mesocardia —i.e., between the aorta and pulmonary artery in front and the superior vena cava behind. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside.[WP,unvetted]." [Wikipedia:Pericardial_sinus]
subset: uberon_slim
synonym: "Thiele's canal" EXACT [FMA:77132]
synonym: "transverse sinus" BROAD []
synonym: "transverse sinus of pericardial cavity" EXACT [FMA:77132]
xref: EHDAA2:0002077
xref: EHDAA:796
xref: EMAPA:16214
xref: FMA:77132
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png
xref: MA:0001880
is_a: UBERON:0010279 ! pericardial sinus
relationship: surrounded_by UBERON:0005601 {source="EHDAA2", source="MA-modified"} ! dorsal mesocardium
[Term]
id: UBERON:0002249
name: median artery
comment: This class was created automatically from a combination of ontologies
xref: FMA:77142
xref: MA:0001999
xref: ncithesaurus:Median_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002250
name: popliteal artery
def: "In human anatomy, the popliteal artery is defined as the extension of the 'superficial' femoral artery after passing through the adductor canal and adductor hiatus above the knee. The termination of the popliteal artery is its bifurcation into the anterior tibial artery and posterior tibial artery. The popliteal artery, through numerous smaller branches, supplies blood to the knee joint and muscles in the thigh and calf. It is accompanied, along its length, by the popliteal vein. [WP,unvetted]." [Wikipedia:Popliteal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria poplitea" RELATED LATIN [Wikipedia:Popliteal_artery]
xref: FMA:77155
xref: GAID:504
xref: http://upload.wikimedia.org/wikipedia/commons/a/a2/Popliteal_artery.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Popliteal_artery.png/200px-Popliteal_artery.png
xref: MA:0002021
xref: MESH:A.07.231.114.681
xref: ncithesaurus:Popliteal_Artery
xref: OpenCyc:Mx4rvduV6pwpEbGdrcN5Y29ycA
xref: SCTID:181350008
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002251
name: iliocostalis muscle
def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]." [Wikipedia:Iliocostalis]
subset: uberon_slim
synonym: "iliocostal muscle" EXACT []
synonym: "iliocostalis" EXACT []
synonym: "lateral column of erector spinae" RELATED []
synonym: "musculus iliocostalis" EXACT LATIN [Wikipedia:Iliocostalis]
xref: FMA:77177
xref: http://upload.wikimedia.org/wikipedia/commons/8/89/Iliostalis.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Iliostalis.png/200px-Iliostalis.png
xref: MA:0002319
xref: ncithesaurus:Iliocostal_Muscle
xref: SCTID:244854008
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column
relationship: has_muscle_insertion UBERON:0002228 {source="dbpedia", notes="Ribs"} ! rib
relationship: has_muscle_nerve UBERON:0006839 {source="dbpedia"} ! posterior ramus of spinal nerve
relationship: has_muscle_origin UBERON:0001076 {source="dbpedia", notes="Sacrum/Illiac Crest/Spinous Processes of lower lumbar/thoracic vertebrae"} ! spinous process of vertebra
relationship: has_muscle_origin UBERON:0003690 {source="dbpedia", notes="Sacrum/Illiac Crest/Spinous Processes of lower lumbar/thoracic vertebrae"} ! sacrum
relationship: part_of UBERON:0002462 {source="Wikipedia"} ! erector spinae muscle group
[Term]
id: UBERON:0002252
name: splenius
def: "." [Wikipedia:Splenius]
comment: Muscle of neck in NA
subset: uberon_slim
xref: FMA:77180
xref: MA:0002382
xref: ncithesaurus:Splenius
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column
[Term]
id: UBERON:0002254
name: thyroglossal duct
def: "The thyroglossal duct is an embryological anatomical structure forming an open connection between the initial area of development of the thyroid gland and its final position. The thyroid gland starts developing in the oropharynx in the fetus and descends to its final position taking a path through the tongue, hyoid bone and neck muscles. The connection between its original position and its final position is the thyroglossal duct. This duct normally atrophies and closes off before birth but can remain open in some people. [WP,unvetted]." [Wikipedia:Thyroglossal_duct]
comment: FMA treats this as vestigial
subset: uberon_slim
synonym: "ductus thyreoglossus" EXACT [Wikipedia:Thyroglossal_duct]
synonym: "ductus thyroglossalis" RELATED LATIN [Wikipedia:Thyroglossal_duct]
xref: EMAPA:17070
xref: EMAPA:18833
xref: FMA:77274
xref: http://upload.wikimedia.org/wikipedia/commons/f/fd/Illu08_thyroid.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fd/Illu08_thyroid.jpg/200px-Illu08_thyroid.jpg
xref: MA:0000130
xref: ncithesaurus:Thyroglossal_Duct
xref: SCTID:308822005
xref: VHOG:0000746
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0006590 ! vestigial embryonic structure
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0002255
name: vomeronasal organ
def: "The vomeronasal organ (VNO), or Jacobson's organ, is an auxiliary olfactory sense organ that is found in many animals. It was discovered by Ludwig Jacobson in 1813. During embryological development, it forms from the nasal (olfactory) placode, at the anterior edge of the neural plate. It is a chemoreceptor organ which is completely separated from the nasal cavity the majority of the time, being enclosed in a separate bony or cartilaginous capsule which opens into the base of the nasal cavity. It is a tubular crescent shape and split into two pairs, separated by the nasal septum. It is the first processing stage of the accessory olfactory system, after which chemical stimuli go to the accessory olfactory bulb, then to targets in the amygdala and hypothalamus. The vomeronasal organ is mainly used to detect pheromones, chemical messengers that carry information between individuals of the same species, hence is sometimes referred to as the 'sixth sense. ' The VNO has two separate types of neuronal receptors, V1R and V2R, which are seven-transmembrane receptors that are coupled to G proteins. The receptors are distinct from each other and form the large family of receptors in the main olfactory system. Evidence shows that the VNO responds to nonvolatile cues which stimulate the receptor neurons. Information is then transferred to the accessory olfactory bulb as well as other centres of the brain such as the anterior part of the hypothalamus. Its presence in many animals has been widely studied and the importance of the vomeronasal system to the role of reproduction and social behavior (through influence on anterior hypothalamus) has been shown in many studies. Its presence and functionality in humans is widely controversial, though most studies agree the organ regresses during fetal development. [WP,unvetted]." [Wikipedia:Vomeronasal_organ]
comment: Taxon notes: Generally formed only in tetrapods; lungfish have rudimentary VN organs; true VN organs are not normally found in recent fishes, birds, aquatic reptiles, aquatic mammals (Bertmar 1980). Humans: Its presence in many animals has been widely studied and the importance of the vomeronasal system to the role of reproduction and social behavior (through influence on anterior hypothalamus) has been shown in many studies. Its presence and functionality in humans was controversial, though most studies agree the organ regresses during fetal development. Many genes essential for VNO function in animals (such as TRPC2) are non-functional in humans (Liman ER. Use it or lose it: molecular evolution of sensory signaling in primates. Pflugers Arch. 2006;453(2):125-31.)
subset: organ_slim
subset: uberon_slim
synonym: "Jacobson's organ" EXACT [XAO:0000272]
synonym: "organ of Jacobsen" RELATED []
synonym: "organon vomeronasale" EXACT []
synonym: "organum vomeronasale" EXACT [BTO:0002608]
synonym: "organum vomeronasale" RELATED LATIN [Wikipedia:Vomeronasal_organ]
xref: AAO:0000997
xref: BTO:0002608
xref: EFO:0001934
xref: EHDAA2:0002211
xref: EHDAA:7865
xref: EMAPA:17612
xref: FMA:77280
xref: GAID:354
xref: http://upload.wikimedia.org/wikipedia/commons/8/84/Gray51.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Gray51.png/200px-Gray51.png
xref: MA:0000289
xref: MESH:A.04.531.591.940
xref: SCTID:361346007
xref: VHOG:0000665
xref: XAO:0000272
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0003050 {source="Wikipedia"} ! olfactory placode
relationship: has_developmental_contribution_from UBERON:0009714 {source="EHDAA2-abduced"} ! intermaxillary process
relationship: part_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0009954 ! vomeronasal system
[Term]
id: UBERON:0002256
name: dorsal horn of spinal cord
def: "the pronounced, dorsolaterally oriented ridge of grey matter in each lateral half of the spinal cord[MP]. the dorsal (more towards the back) grey matter of the spinal cord. It receives several types of sensory information from the body, including light touch, proprioception, and vibration. This information is sent from receptors of the skin, bones, and joints through sensory neurons whose cell bodies lie in the dorsal root ganglion[WP]. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input[GO]." [GO:0021516, MP:0006282, Wikipedia:Posterior_horn_of_spinal_cord]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "cornu dorsale" EXACT [ZFA:0000649]
synonym: "cornu posterius medullae spinalis" RELATED LATIN [Wikipedia:Posterior_horn_of_spinal_cord]
synonym: "dorsal gray column of spinal cord" EXACT [FMA:256530]
synonym: "dorsal gray horn" EXACT [NIF_GrossAnatomy:birnlex_2667]
synonym: "dorsal gray matter of spinal cord" EXACT [FMA:256530]
synonym: "dorsal grey column of spinal cord" EXACT []
synonym: "dorsal grey horn" BROAD [EMAPA:18574]
synonym: "dorsal horn" EXACT [ZFA:0000649]
synonym: "dorsal horn spinal cord" EXACT [ZFA:0000649]
synonym: "dorsal region of mature spinal cord" EXACT []
synonym: "dorsal region of spinal cord" EXACT []
synonym: "dorsal spinal cord" EXACT []
synonym: "posterior gray column of spinal cord" EXACT [FMA:256530]
synonym: "posterior gray horn of spinal cord" EXACT [FMA:256530]
synonym: "posterior grey column of spinal cord" EXACT []
synonym: "posterior horn of spinal cord" EXACT [Wikipedia:Posterior_horn_of_spinal_cord]
synonym: "spinal cord dorsal horn" EXACT []
synonym: "spinal cord posterior horn" EXACT [NIF_GrossAnatomy:birnlex_2667]
xref: BM:SpC-DH
xref: EMAPA:18574
xref: FMA:256530
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Medulla_spinalis_-_Section_-_English.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png
xref: MA:0001119
xref: ncithesaurus:Dorsal_Horn_of_the_Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_2667
xref: SCTID:180961004
xref: TAO:0000649
xref: VHOG:0001287
xref: ZFA:0000649
is_a: UBERON:0001948 ! regional part of spinal cord
relationship: part_of UBERON:0002315 ! gray matter of spinal cord
[Term]
id: UBERON:0002257
name: ventral horn of spinal cord
def: "the ventral grey column of the spinal cord[MP]. The neurons of the ventral region of the mature spinal cord participate in motor output[GO]." [GO:0021517, MP:0005112]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "anterior gray column of spinal cord" EXACT [FMA:256541]
synonym: "anterior gray horn of spinal cord" EXACT [FMA:256541]
synonym: "anterior grey column of spinal cord" EXACT []
synonym: "anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668]
synonym: "spinal cord anterior horn" EXACT [NIF_GrossAnatomy:birnlex_2668]
synonym: "spinal cord ventral horn" EXACT []
synonym: "ventral gray column of spinal cord" EXACT [FMA:256541]
synonym: "ventral gray matter of spinal cord" EXACT [FMA:256541]
synonym: "ventral grey column of spinal cord" EXACT []
synonym: "ventral grey horn" EXACT [NIF_GrossAnatomy:birnlex_2668]
synonym: "ventral horn spinal cord" EXACT [ZFA:0000702]
synonym: "ventral region of spinal cord" EXACT []
synonym: "ventral spinal cord" EXACT []
xref: EMAPA:18575
xref: FMA:256541
xref: MA:0001134
xref: ncithesaurus:Ventral_Horn_of_the_Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_2668
xref: SCTID:279443000
xref: TAO:0000702
xref: VHOG:0001288
xref: ZFA:0000702
is_a: UBERON:0001948 ! regional part of spinal cord
relationship: part_of UBERON:0002315 ! gray matter of spinal cord
[Term]
id: UBERON:0002258
name: dorsal funiculus
def: "The portion of the medulla spinalis which lies between the posterolateral sulcus and the posterior median sulcus is named the posterior funiculus. This area includes the dorsal columns (also called the posterior columns) which contains the fasciculus gracilis and, higher in the body, the fasciculus cuneatus, which are separated by a partition of glial cells. Histologically, these two fasciculi are on other sides of the dorsal intermediate sulcus. [WP,unvetted]." [Wikipedia:Dorsal_funiculus]
subset: uberon_slim
subset: vertebrate_core
synonym: "dorsal funiculus of spinal cord" EXACT []
synonym: "dorsal white column of spinal cord" EXACT [FMA:77461]
synonym: "funiculus dorsalis" EXACT [ZFA:0000501]
synonym: "funiculus posterior medullae spinalis" EXACT [FMA:77461, FMA:TA]
synonym: "posterior funiculus" EXACT []
synonym: "posterior funiculus of spinal cord" EXACT []
synonym: "posterior white column of spinal cord" EXACT [FMA:77461]
xref: FMA:77461
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png
xref: SCTID:362432005
xref: TAO:0000501
xref: ZFA:0000501
is_a: UBERON:0006127 ! funiculus of spinal cord
[Term]
id: UBERON:0002259
name: corpora quadrigemina
def: "In the brain, the corpora quadrigemina (Latin for 'quadruplet bodies') are the four colliculi—two inferior, two superior—located on the tectum the dorsal aspect of the midbrain. The corpora quadrigemina are reflex centers involving vision and hearing. [WP,unvetted]. Two pairs of colliculi on the dorsal surface of the midbrain composed of white matter externally and gray matter within, the superior pair containing correlation centers for optic reflexes and the inferior pair containing correlation centers for auditory reflexes[BTO]." [BTO:0001710, Wikipedia:Corpora_quadrigemina]
comment: editor note: this section needs worked on for pan-vertebrate consistency. for now we include a mammal specific definition, even though the child terms are applicable across vertebrates
subset: uberon_slim
synonym: "colliculi" EXACT [MP:0000899]
synonym: "corpora quadrigemina" EXACT []
xref: BTO:0001710
xref: EV:0100244
xref: FMA:242157
xref: GAID:574
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png
xref: MA:0002567
xref: MESH:A.08.186.211.132.659.237
xref: ncithesaurus:Corpora_Quadrigemina
xref: SCTID:361579006
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0006777 ! tectal plate
relationship: part_of UBERON:0002314 ! midbrain tectum
[Term]
id: UBERON:0002260
name: ventral root of spinal cord
def: "The efferent motor root of a spinal nerve. At its distal end, the ventral root joins with the dorsal root to form a mixed spinal nerve." [Wikipedia:Anterior_root_of_spinal_nerve]
comment: FMA:77516 xref is a 'general anatomical term'. We xref both to ensure equivalence.
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior nerve root" RELATED [Wikipedia:Anterior_root_of_spinal_nerve]
synonym: "anterior root" RELATED [Wikipedia:Anterior_root_of_spinal_nerve]
synonym: "radix anterior nervi spinalis" RELATED LATIN [Wikipedia:Anterior_root_of_spinal_nerve]
synonym: "ventral root" BROAD [NIF_GrossAnatomy:nlx_anat_20090209]
xref: FMA:5979
xref: FMA:77516
xref: http://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png
xref: ncithesaurus:Ventral_Nerve_Root
xref: NIF_GrossAnatomy:nlx_anat_20090209
xref: TAO:0000705
xref: ZFA:0000705
is_a: UBERON:0009623 {source="FMA", different_relation_from="ZFA"} ! spinal nerve root
[Term]
id: UBERON:0002261
name: dorsal root of spinal cord
def: "In anatomy and neurology, the dorsal root (or posterior root) is the afferent sensory root of a spinal nerve. At the distal end of the dorsal root is the dorsal root ganglion, which contains the neuron cell bodies of the nerve fibres conveyed by the root. If the dorsal root of a spinal nerve were severed it would lead to numbness in certain areas of the body. The lateral division of the dorsal root contains lightly myelinated and unmyelinated axons of small diameter. These transmit pain and temperature sensation from the body. These fibers cross through the anterior white commissure to form the Anterior lateral system in the lateral funiculus. The medial division of the dorsal root contains myelinated axons of larger diameter. These transmit information of discriminative touch, pressure, vibration, and conscious proprioception originating from spinal levels C2 through S5. These fibers are pushed in towards the posterior medial sulcus to form the fasciculus gracilis and the fasciculus cuneatus. [WP,unvetted]." [Wikipedia:Posterior_root_of_spinal_nerve]
comment: FMA xref is 'general anatomical term'. We xref both to ensure equivalence.
subset: uberon_slim
subset: vertebrate_core
synonym: "dorsal root" EXACT [ZFA:0000652]
synonym: "dorsal root of spinal nerve" EXACT [FMA:5980]
synonym: "dorsal spinal nerve root" EXACT [FMA:5980]
synonym: "posterior root of spinal nerve" EXACT [Wikipedia:Posterior_root_of_spinal_nerve]
synonym: "radix dorsalis" EXACT [ZFA:0000652]
synonym: "radix posterior" RELATED LATIN [Wikipedia:Posterior_root_of_spinal_nerve]
synonym: "radix posterior (nervus spinalis)" EXACT [FMA:5980]
synonym: "radix sensoria (nervus spinalis)" EXACT [FMA:5980]
synonym: "sensory root of spinal nerve" EXACT [FMA:5980]
xref: BTO:0000360
xref: FMA:5980
xref: http://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png
xref: ncithesaurus:Dorsal_Root_of_the_Spinal_Nerve
xref: NIF_GrossAnatomy:nlx_anat_20090208
xref: SCTID:362436008
xref: TAO:0000652
xref: ZFA:0000652
is_a: UBERON:0009623 {source="FMA"} ! spinal nerve root
[Term]
id: UBERON:0002262
name: celiac ganglion
def: "The celiac ganglia are two large irregularly shaped masses of nerve tissue in the upper abdomen. Part of the sympathetic subdivision of the autonomic nervous system (ANS), the two celiac ganglia are the largest ganglia in the ANS, and they innervate most of the digestive tract. They have the appearance of lymph glands and are placed on either side of the midline in front of the crura of the diaphragm, close to the suprarenal glands (also called adrenal glands). The ganglion on the right side is placed behind the inferior vena cava. They are sometimes referred to as the semilunar ganglia or the solar ganglia. [WP,unvetted]." [Wikipedia:Celiac_ganglia]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "coeliac ganglion" RELATED []
xref: EHDAA2:0000266
xref: EHDAA:8946
xref: EMAPA:19321
xref: FMA:77570
xref: http://upload.wikimedia.org/wikipedia/commons/6/63/Gray848.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray848.png/200px-Gray848.png
xref: MA:0001158
xref: ncithesaurus:Coeliac_Ganglion
xref: SCTID:362492008
is_a: UBERON:0003964 ! prevertebral ganglion
[Term]
id: UBERON:0002263
name: lentiform nucleus
def: "The lentiform nucleus or lenticular nucleus comprises the putamen and the globus pallidus within the basal ganglia. It is a large, cone-shaped mass of gray matter just lateral to the internal capsule. [WP,unvetted]. The part of the corpus striatum somewhat resembling a biconvex lens, divided into an external, larger, lateral part (putamen) and an internal, smaller, lighter colored medial part (globus pallidus), which is in turn subdivided into a smaller, medial, and a larger, lateral part by the medial medullary lamina[BTO]." [BTO:0002250, Wikipedia:Lentiform_nucleus]
comment: AO notes: the EMAPA class is unclear. Editor notes: TODO - add parts
subset: uberon_slim
synonym: "lenticular nucleus" RELATED [BTO:0002250]
synonym: "nucleus lenticularis" EXACT [BTO:0002250]
synonym: "nucleus lentiformis" EXACT [BTO:0002250]
synonym: "nucleus lentiformis" RELATED LATIN [Wikipedia:Lentiform_nucleus]
xref: BTO:0002250
xref: EMAPA:18208
xref: EMAPA:19147
xref: EV:0100186
xref: FMA:77615
xref: http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray741.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fc/Gray741.png/200px-Gray741.png
xref: MA:0000896
xref: ncithesaurus:Lenticular_Nucleus
xref: OpenCyc:Mx4rvvyH2ZwpEbGdrcN5Y29ycA
xref: SCTID:279319002
is_a: UBERON:0009663 ! telencephalic nucleus
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_part UBERON:0001874 ! putamen
relationship: has_part UBERON:0001875 ! globus pallidus
relationship: part_of UBERON:0000369 ! corpus striatum
relationship: part_of UBERON:0005403 ! ventral striatum
[Term]
id: UBERON:0002264
name: olfactory bulb
def: "A bulbous anterior projection of the olfactory lobe that is the place of termination of the olfactory nerves and is especially well developed in lower vertebrates (as fishes)[BTO]. Segment of neural tree organ which is continuous with a set of olfactory nerves and an olfactory tract. In most vertebrates, the olfactory bulb is the most rostral (forward) part of the brain. In humans, however, the olfactory bulb is on the inferior (bottom) side of the brain. The olfactory bulb is supported and protected by the cribriform plate which in mammals, separates it from the olfactory epithelium, and which is perforated by olfactory nerve axons. The bulb is divided into two distinct structures, the main olfactory bulb, and the accessory olfactory bulb[WP]." [Wikipedia:Olfactory_bulb]
comment: Note that in uberon 'main olfactory bulb' is a separate class, but some ontologies may treat this as partially synonymous. Development notes: the olfactory bulbs develop as bilateral evaginations from a region of the prosencephalic neural plate intercalated between the septal and the cortical anlagen (Cobos et al. 2001b, Rubenstein et al. 1998). Comparing the structure of the olfactory bulb among vertebrate species, such as the leopard frog and the lab mouse, reveals that they all share the same fundamental layout(WP).
subset: uberon_slim
subset: vertebrate_core
synonym: "bulbus olfactorius" EXACT [Wikipedia:Olfactory_bulb]
synonym: "bulbus olfactorius" RELATED LATIN [Wikipedia:Olfactory_bulb]
synonym: "olfactory lobe" RELATED [ZFA:0000402]
xref: AAO:0010165
xref: ABA:OLF
xref: BM:Tel-OB
xref: BTO:0000961
xref: EHDAA2:0001294
xref: EV:0100173
xref: FMA:77624
xref: GAID:633
xref: http://upload.wikimedia.org/wikipedia/commons/f/f9/1543\,Vesalius%27OlfactoryBulbs.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg/200px-1543%2CVesalius%27OlfactoryBulbs.jpg
xref: MA:0000194
xref: MESH:A.08.186.211.577.699.573
xref: ncithesaurus:Olfactory_Bulb
xref: NIF_GrossAnatomy:birnlex_1137
xref: SCTID:279394006
xref: TAO:0000402
xref: VHOG:0000033
xref: XAO:0004180
xref: ZFA:0000402
property_value: "spatially_disjoint_from" UBERON:0001950
property_value: "spatially_disjoint_from" UBERON:0002421
property_value: UBPROP:0000001 "Part of the telencephalon comprised of anterior outgrowths of either of the cerebral hemispheres in which the olfactory nerve exits.[AAO]" xsd:string
is_a: UBERON:0002791 ! regional part of telencephalon
disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0005366 ! olfactory lobe
[Term]
id: UBERON:0002265
name: olfactory tract
def: "Tract of brain which is continuous with olfactory bulb and the cerebral cortex.[FMA]" [FMA:FMA, Wikipedia:Olfactory_tract]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "olfactory peduncle" RELATED [BTO:0003647]
synonym: "tractus olfactorius" RELATED LATIN [Wikipedia:Olfactory_tract]
synonym: "tractus olfactorius" RELATED [BTO:0003647]
xref: BTO:0003647
xref: FMA:77626
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: MA:0000975
xref: ncithesaurus:Olfactory_Tract
xref: NIF_GrossAnatomy:birnlex_1663
xref: SCTID:362356008
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0001016 ! nervous system
relationship: part_of UBERON:0002894 ! olfactory cortex
[Term]
id: UBERON:0002266
name: anterior olfactory nucleus
def: "The anterior olfactory nucleus (AON; also called the anterior olfactory cortex) is a portion of the forebrain of vertebrates. [WP,unvetted]." [Wikipedia:Anterior_olfactory_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior olfactory cortex" RELATED [BTO:0003649]
synonym: "AON" RELATED [BTO:0003649]
synonym: "nucleus olfactorius anterior" RELATED LATIN [Wikipedia:Anterior_olfactory_nucleus]
synonym: "nucleus retrobulbaris [a8]" EXACT [FMA:77628, FMA:TA]
synonym: "retrobulbar nucleus [a8]" EXACT []
xref: ABA:AON
xref: BM:Tel-OAN
xref: BTO:0003649
xref: EV:0100174
xref: FMA:77628
xref: http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG
xref: MA:0000968
xref: ncithesaurus:Anterior_Olfactory_Nucleus
xref: NIF_GrossAnatomy:birnlex_1085
property_value: "spatially_disjoint_from" UBERON:0002590
property_value: "spatially_disjoint_from" UBERON:0002893
property_value: "spatially_disjoint_from" UBERON:0004069
is_a: UBERON:0009663 ! telencephalic nucleus
disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon
relationship: part_of UBERON:0002894 ! olfactory cortex
[Term]
id: UBERON:0002267
name: laterodorsal tegmental nucleus
def: "The laterodorsal tegmental nucleus (or lateroposterior tegmental nucleus) is a nucleus situated in the brainstem, spanning the midbrain tegmentum and the pontine tegmentum. [WP,unvetted]." [Wikipedia:Laterodorsal_tegmental_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateroposterior tegmental nucleus" EXACT []
synonym: "nucleus tegmentalis posterolateralis" EXACT [FMA:77654, FMA:TA]
synonym: "nucleus tegmentalis posterolateralis" RELATED LATIN [Wikipedia:Laterodorsal_tegmental_nucleus]
xref: ABA:LDT
xref: BTO:0004016
xref: FMA:77654
xref: MA:0001016
property_value: "spatially_disjoint_from" UBERON:0002047
property_value: "spatially_disjoint_from" UBERON:0002148
property_value: "spatially_disjoint_from" UBERON:0002587
property_value: "spatially_disjoint_from" UBERON:0003004
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002268
name: olfactory organ
comment: note - fma general anatomical term. xao has no subtypes (but Johnstons organ develops from this). An olfactory organ overlaps with the olfactory system, because some parts of the nose (e.g. nasal skeleton) are parts of the skeletal system, which is spatially disjoint
subset: functional_classification
synonym: "olfactory neuroepithelium" RELATED [BTO:0001772]
synonym: "organ olfactus" RELATED [BTO:0001772]
synonym: "organum olfactorium" RELATED [BTO:0001772]
xref: AAO:0010180
xref: BTO:0001772
xref: FMA:77659
xref: VHOG:0000287
xref: XAO:0000273
is_a: UBERON:0000020 ! sense organ
relationship: overlaps UBERON:0005725 ! olfactory system
[Term]
id: UBERON:0002269
name: pupillary membrane
def: "The pupillary membrane in mammals exists in the fetus as a source of blood supply for the lens. It normally atrophies from the time of birth to the age of four to eight weeks." [Wikipedia:Persistent_pupillary_membrane]
comment: This class was created automatically from a combination of ontologies
xref: FMA:77663
xref: MA:0001293
is_a: UBERON:0000158 ! membranous layer
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010312 ! immature eye
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001771 ! pupil
[Term]
id: UBERON:0002270
name: hyaloid artery
def: "The hyaloid artery is a branch of the ophthalmic artery, which is itself a branch of the internal carotid artery. It is contained within the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens. Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development in humans (time varies depending on species), the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. Cloquet's canal is named after the man who first described it, French physician Jules Germain Cloquet (1790b1883). Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as \"floaters\". An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla." [Wikipedia:Hyaloid_artery]
comment: ZFA def is: Artery that is internal to the eye; this is more general than the human-centric definition here..
subset: uberon_slim
subset: vertebrate_core
synonym: "arteria hyaloidea" RELATED LATIN [Wikipedia:Hyaloid_artery]
synonym: "central artery of retina" RELATED [EMAPA:19242]
synonym: "Cloquet's canal" RELATED [Wikipedia:Hyaloid_artery]
synonym: "Cloquets canal" RELATED [Wikipedia:Hyaloid_artery]
xref: EHDAA2:0004072
xref: EMAPA:19242
xref: FMA:77670
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: SCTID:308790003
xref: TAO:0005045
xref: VHOG:0001478
xref: XAO:0004155
xref: ZFA:0005045
property_value: UBPROP:0000001 "Artery that is internal to the eye. Isogai et al. 2001.[TAO]" xsd:string
is_a: UBERON:0001637 {source="ZFA"} ! artery
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0003499 ! brain blood vessel
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010312 ! immature eye
relationship: part_of UBERON:0003098 ! optic stalk
relationship: part_of UBERON:0005492 {source="ZFA"} ! hyaloid vessel
relationship: part_of UBERON:0006010 ! hyaloid canal
[Term]
id: UBERON:0002271
name: periventricular zone of hypothalamus
comment: This class was created automatically from a combination of ontologies
synonym: "hypothalamus periventricular zone" EXACT []
xref: ABA:PVZ
xref: FMA:77682
xref: MA:0000846
xref: VHOG:0000623
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002272
name: medial zone of hypothalamus
comment: This class was created automatically from a combination of ontologies
synonym: "hypothalamus medial zone" EXACT []
xref: ABA:MEZ
xref: FMA:77683
xref: MA:0000837
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002273
name: lateral zone of hypothalamus
comment: This class was created automatically from a combination of ontologies
synonym: "hypothalamus lateral zone" EXACT []
xref: ABA:LZ
xref: FMA:77684
xref: MA:0000833
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002274
name: perifornical nucleus
comment: This class was created automatically from a combination of ontologies
xref: FMA:77688
xref: MA:0000836
is_a: UBERON:0006568 ! hypothalamic nucleus
relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus
[Term]
id: UBERON:0002275
name: reticular formation
comment: note that this class denotes the generic structure, and not a specific one such as medullary or pontine reticular formation.
subset: uberon_slim
xref: FMA:77719
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png
xref: MESH:A.08.186.211.132.772
xref: SCTID:361552007
is_a: UBERON:0000073 ! regional part of nervous system
[Term]
id: UBERON:0002276
name: lamina of spiral limbus
def: "The osseous spiral lamina consists of two plates of bone, and between these are the canals for the transmission of the filaments of the acoustic nerve. On the upper plate of that part of the lamina which is outside the vestibular membrane, the periosteum is thickened to form the limbus spiralis (or limbus laminæ spiralis), this ends externally in a concavity, the sulcus spiralis internus, which represents, on section, the form of the letter C. [WP,unvetted]." [Wikipedia:Limbus_laminae_spiralis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "limbus lamina spiralis" EXACT [MA:0001191]
synonym: "limbus laminae spiralis" EXACT [FMA:77721]
synonym: "spiral limbus" RELATED []
synonym: "spiral limbus lamina" EXACT [FMA:77721]
synonym: "spiral limbus lamina" EXACT []
xref: FMA:77721
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray930.png/200px-Gray930.png
xref: MA:0001191
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002277
name: spiral sulcus
comment: This class was created automatically from a combination of ontologies
synonym: "sulcus spiralis" EXACT []
xref: FMA:77744
xref: MA:0001195
is_a: UBERON:0000093 ! sulcus
relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002278
name: perilymphatic space
def: "The fluid-filled space separating the membranous from the osseous labyrinth." [Dorlands_Medical_Dictionary:MerckSource]
subset: vertebrate_core
synonym: "Retzius space" RELATED []
synonym: "spatium perilymphaticum" RELATED []
xref: BTO:0002083
xref: FMA:77745
xref: SCTID:362576001
xref: ZFA:0005459
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001846 ! internal ear
relationship: surrounded_by UBERON:0001839 ! bony labyrinth
relationship: surrounds UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0002279
name: vestibular aqueduct
def: "At the hinder part of the medial wall of the vestibule is the orifice of the vestibular aqueduct, which extends to the posterior surface of the petrous portion of the temporal bone. It transmits a small vein, and contains a tubular prolongation of the membranous labyrinth, the ductus endolymphaticus, which ends in a cul-de-sac between the layers of the dura mater within the cranial cavity. [WP,unvetted]." [Wikipedia:Vestibular_aqueduct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "aqueductus vestibuli" RELATED LATIN [Wikipedia:Vestibular_aqueduct]
xref: FMA:77821
xref: GAID:885
xref: http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001186
xref: MESH:A.09.246.631.909.957
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0005236 ! osseus labyrinth vestibule
[Term]
id: UBERON:0002280
name: otolith
def: "Acellular structure composed of calcium carbonate located in the otolith organ." [Wikipedia:Otolith, ZFIN:curator]
subset: uberon_slim
subset: vertebrate_core
synonym: "immature otolith" RELATED []
synonym: "immature otoliths" RELATED []
synonym: "otoconium" EXACT []
synonym: "otoliths" EXACT PLURAL []
synonym: "statoconium" EXACT []
synonym: "statolith" RELATED []
xref: ANISEED:777311
xref: ANISEED:874485
xref: FMA:77826
xref: http://upload.wikimedia.org/wikipedia/commons/c/cb/Bigotolith.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg
xref: ncithesaurus:Otolith
xref: TAO:0001621
xref: ZFA:0001617
property_value: UBPROP:0000001 "Portion of organism substance composed of calcium carbonate located in the otolith organ.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from immature otolith (TAO:0000139)[TAO]" xsd:string
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002518 ! otolith organ
[Term]
id: UBERON:0002281
name: vestibular membrane of cochlear duct
def: "a membrane inside the cochlea of the inner ear. It separates scala media from scala vestibuli. Together with the basilar membrane it creates a compartment in the cochlea filled with endolymph, which is important for the function of the organ of Corti. It primarily functions as a diffusion barrier, allowing nutrients to travel from the perilymph to the endolymph of the membranous labyrinth. Histologically, the membrane is composed of two layers of flattened epithelium, separated by a basal lamina. Its structure suggests that its function is transport of fluid and electrolytes." [Wikipedia:Reissner's_membrane]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Reissner's membrane" EXACT [FMA:77829]
synonym: "superior wall of cochlear duct" EXACT [FMA:77829]
synonym: "vestibular membrane" EXACT [MA:0001200]
synonym: "vestibular membrane of Reissner" EXACT [FMA:77829]
xref: FMA:77829
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/0/0c/Cochlea-crosssection.png/250px-Cochlea-crosssection.png
xref: MA:0001200
xref: SCTID:362575002
is_a: UBERON:0000094 ! membrane organ
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0006585 ! vestibular organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: adjacent_to UBERON:0001863 ! scala vestibuli
relationship: adjacent_to UBERON:0002295 ! scala media
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002282
name: stria vascularis of cochlear duct
def: "The upper portion of the spiral ligament contains numerous capillary loops and small blood vessels, and is termed the stria vascularis. It produces endolymph for the scala media, one of the three fluid-filled compartments of the cochlea. [WP,unvetted]." [Wikipedia:Stria_vascularis]
comment: AO notes: represented as a wall in FMA. MESH def implies part of spiral ligament but better represented as adjacency / overlaps
subset: uberon_slim
synonym: "psalterial cord" EXACT [MP:0000048]
synonym: "stria vascularis" EXACT []
synonym: "stria vascularis ductus cochlearis" RELATED LATIN [BTO:0001819]
synonym: "stria vascularis of cochlea" EXACT [FMA:77832]
synonym: "vascular stria of cochlear duct" RELATED [BTO:0001819]
synonym: "vascular stripe of cochlear duct" EXACT [MP:0000048]
xref: BTO:0001819
xref: EFO:0001644
xref: FMA:77832
xref: GAID:875
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png
xref: MA:0001198
xref: MESH:A.09.246.631.246.292.876
xref: NIF_GrossAnatomy:birnlex_2525
xref: SCTID:279842002
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0002342 {source="NBK53175", notes="pigment cells"} ! neural crest
relationship: part_of UBERON:0001855 {source="FMA", source="MA"} ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002283
name: nail matrix
def: "Portion of tissue (or germinal matrix) upon which the nail rests, the part of the nail bed that extends beneath the nail root and contains nerves, lymph and blood vessels. The matrix is responsible for the production of the cells that become the nail plate. The width and thickness of the nail plate is determined by the size, length, and thickness of the matrix, while the shape of the fingertip itself determines if the nail plate is flat, arched, or hooked. The matrix will continue to grow as long as it receives nutrition and remains in a healthy condition. As new nail plate cells are incubated, they emerge from the matrix round and white to push older nail plate cells forward; and in this way yet older cells become compressed, flat, and translucent, making the pink colour of the capillaries in the nail bed below visible[WP]." [UBERON:cjm]
subset: uberon_slim
synonym: "keratogenous membrane" EXACT [Wikipedia:Nail_(anatomy)#Parts_of_the_nail]
synonym: "matrix unguis" EXACT [Wikipedia:Nail_(anatomy)#Parts_of_the_nail]
synonym: "onychostroma" EXACT [Wikipedia:Nail_(anatomy)#Parts_of_the_nail]
xref: FMA:77856
xref: MA:0002707
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001705 ! nail
[Term]
id: UBERON:0002284
name: hyponychium
def: "Epithelium located beneath the nail plate at the junction between the free edge and the skin of the fingertip. It forms a seal that protects the nail bed." [Wikipedia:Hyponychium]
subset: uberon_slim
xref: FMA:77860
xref: MA:0002705
xref: SCTID:300918002
is_a: UBERON:0010371 ! ecto-epithelium
relationship: adjacent_to UBERON:0001705 ! nail
relationship: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0002285
name: lateral ventricle
def: "The two lateral ventricles are a cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube. They are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle[GO]. The lateral ventricles are part of the ventricular system of the brain. Classified as part of the telencephalon, they are the largest of the ventricles. The lateral ventricles connect to the central third ventricle through the interventricular foramina of Monro[WP]." [GO:0021670, Wikipedia:Lateral_ventricle]
comment: Paired structure
subset: uberon_slim
subset: vertebrate_core
synonym: "lateral ventricle of brain" RELATED [BTO:0000879]
synonym: "telencephalic ventricle" EXACT [VHOG:0000643, ZFA:0000696]
synonym: "telencephalon lateral ventricle" EXACT [EHDAA2:0001984]
xref: BM:Tel-LV
xref: BTO:0000879
xref: EFO:0001961
xref: EHDAA2:0001984
xref: EHDAA:3502
xref: EHDAA:6576
xref: EV:0100307
xref: FMA:78448
xref: GAID:611
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png
xref: MA:0000192
xref: MESH:A.08.186.211.276.650
xref: ncithesaurus:Lateral_Ventricle
xref: NIF_GrossAnatomy:birnlex_1263
xref: OpenCyc:Mx4rvYsFdZwpEbGdrcN5Y29ycA
xref: SCTID:180930008
xref: TAO:0000696
xref: VHOG:0000643
xref: ZFA:0000696
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002286
name: third ventricle
def: "Part of the ventricular system of the brain, forming a single large cavity in the midline of the diencephalon; it is continuous with the lateral ventricles through the interventricular foramen and the fourth ventricle through the cerebral aqueduct (Maryann Martone). A narrow cleft inferior to the corpus callosum, within the diencephalon, between the paired thalami. Its floor is formed by the HYPOTHALAMUS, its anterior wall by the lamina terminalis, and its roof by EPENDYMA. It communicates with the FOURTH VENTRICLE by the CEREBRAL AQUEDUCT, and with the LATERAL VENTRICLES by the interventricular foramina[GAID]." [GAID:614, NIF_GrossAnatomy:birnlex_714, Wikipedia:Third_ventricle]
comment: Singular structure
subset: uberon_slim
subset: vertebrate_core
synonym: "3rd ventricle" EXACT []
synonym: "diencephalic ventricle" RELATED []
synonym: "diencephalic vesicle" RELATED []
synonym: "ventriculus diencephali" EXACT [ZFA:0000161]
synonym: "ventriculus tertius cerebri" RELATED LATIN [Wikipedia:Third_ventricle]
xref: BM:Die-3V
xref: EHDAA2:0000084
xref: EMAPA:16515
xref: EMAPA:16642
xref: EMAPA:16900
xref: EV:0100308
xref: FMA:78454
xref: GAID:614
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png
xref: MA:0000182
xref: MESH:A.08.186.211.276.840
xref: ncithesaurus:Third_Ventricle_of_Brain
xref: NIF_GrossAnatomy:birnlex_714
xref: OpenCyc:Mx4rvakhcJwpEbGdrcN5Y29ycA
xref: SCTID:180931007
xref: TAO:0000161
xref: VHOG:0000007
xref: ZFA:0000161
property_value: UBPROP:0000001 "Fluid-filled brain cavity. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from forebrain ventricle (TAO:0001259)[TAO]" xsd:string
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002287
name: optic recess of third ventricle
def: "At the junction of the floor and anterior wall of the third ventricle, immediately above the optic chiasma, the ventricle presents a small angular recess or diverticulum, the optic recess (or supraoptic recess). [WP,unvetted]." [Wikipedia:Optic_recess]
comment: TODO - check taxonomic grouping
subset: uberon_slim
subset: vertebrate_core
synonym: "optic recess" EXACT []
synonym: "preoptic recess" EXACT []
synonym: "recessus supraopticus" EXACT [FMA:78455, FMA:TA]
synonym: "recessus supraopticus" RELATED LATIN [Wikipedia:Optic_recess]
synonym: "supraoptic recess" EXACT []
xref: EHDAA2:0001317
xref: EHDAA:1343
xref: EHDAA:1973
xref: EHDAA:2649
xref: EHDAA:3478
xref: EMAPA:16644
xref: EMAPA:16902
xref: FMA:78455
xref: http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray721.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray721.png/200px-Gray721.png
xref: SCTID:369279008
xref: TAO:0000049
xref: VHOG:0000595
xref: ZFA:0000049
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0002286 ! third ventricle
[Term]
id: UBERON:0002288
name: choroid plexus of third ventricle
def: "A choroid plexus that is part of a third ventricle [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "3rd ventricle choroid plexus" RELATED []
synonym: "chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic]
synonym: "chorioid plexus of third ventricle" EXACT []
synonym: "choroid plexus third ventricle" EXACT [ZFA:0001444]
synonym: "diencephalic choroid plexus " EXACT [ZFA:0001444]
synonym: "third ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "third ventricle choroid plexus" EXACT []
xref: FMA:78462
xref: MA:0000879
xref: ncithesaurus:Choroid_Plexus_of_the_Third_Ventricle
xref: SCTID:61576002
xref: TAO:0001444
xref: VHOG:0001374
xref: ZFA:0001444
is_a: UBERON:0001886 ! choroid plexus
relationship: part_of UBERON:0002286
intersection_of: UBERON:0001886 ! choroid plexus
intersection_of: part_of UBERON:0002286 ! third ventricle
relationship: part_of UBERON:0002286 ! third ventricle
[Term]
id: UBERON:0002289
name: cerebral aqueduct
alt_id: UBERON:0005684
def: "The mesencephalic duct, also known as the aqueductus mesencephali, aqueduct of Sylvius or the cerebral aqueduct, contains cerebrospinal fluid (CSF), is within the mesencephalon (or midbrain) and connects the third ventricle in the diencephalon to the fourth ventricle, which is between the pons and cerebellum. [WP,unvetted]." [Wikipedia:Cerebral_aqueduct]
comment: AO notes: Two distinct classes in ncit
subset: uberon_slim
subset: vertebrate_core
synonym: "aqueduct (sylvius)" EXACT []
synonym: "aqueduct of midbrain" EXACT []
synonym: "aqueduct of sylvius" EXACT []
synonym: "aqueductus mesencephali" EXACT [FMA:78467, FMA:TA]
synonym: "aqueductus mesencephali" RELATED LATIN [Wikipedia:Cerebral_aqueduct]
synonym: "cerebral aquaduct" EXACT [ZFA:0000159]
synonym: "cerebral aqueduct of sylvius" EXACT []
synonym: "medial tectal ventricle" EXACT [ZFA:0000159]
synonym: "mesencephalic ventricle" EXACT [ZFA:0000159]
synonym: "mesencephalic vesicle" EXACT [ZFA:0000159]
synonym: "midbrain cerebral aqueduct" EXACT [EHDAA2:0001163]
synonym: "midbrain ventricle" EXACT [ZFA:0000159]
synonym: "tectal ventricle" EXACT [ZFA:0000159]
xref: BM:MB-AQ
xref: EFO:0003501
xref: EHDAA2:0001163
xref: EHDAA:3696
xref: EMAPA:17795
xref: EV:0100309
xref: FMA:78467
xref: GAID:583
xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png
xref: MA:0000208
xref: MESH:A.08.186.211.132.659.822.187
xref: ncithesaurus:Aqueduct_of_Sylvius
xref: ncithesaurus:Cerebral_Aqueduct
xref: NIF_GrossAnatomy:birnlex_1261
xref: SCTID:279249003
xref: TAO:0000159
xref: VHOG:0000832
xref: ZFA:0000159
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0002290
name: choroid plexus of fourth ventricle
def: "A choroid plexus that is part of a fourth ventricle [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "4th ventricle choroid plexus" RELATED []
synonym: "chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic]
synonym: "chorioid plexus of fourth ventricle" EXACT []
synonym: "choroid plexus fourth ventricle" EXACT [ZFA:0001446]
synonym: "fourth ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "fourth ventricle choroid plexus" EXACT []
xref: FMA:78492
xref: MA:0000983
xref: ncithesaurus:Choroid_Plexus_of_the_Fourth_Ventricle
xref: SCTID:42214001
xref: TAO:0001446
xref: VHOG:0001375
xref: ZFA:0001446
is_a: UBERON:0001886 ! choroid plexus
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002422
intersection_of: UBERON:0001886 ! choroid plexus
intersection_of: part_of UBERON:0002422 ! fourth ventricle
relationship: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0002422 ! fourth ventricle
[Term]
id: UBERON:0002291
name: central canal
alt_id: UBERON:0002220
def: "Spinal cord structure that is part of the ventricular system and is filled with cerebral-spinal fluid and runs the length of the spinal cord." [ZFIN:curator]
comment: previously mapped to FMA:75364. Note some ontologies (NIF, SNOMED) subdivide this into lumbar, thoracic, etc. Note we follow FMA in distinguishing between the canal and the lumen
subset: uberon_slim
subset: vertebrate_core
synonym: "canalis centralis" EXACT [ZFA:0000938]
synonym: "central canal of spinal cord" EXACT []
synonym: "neural lumen" RELATED []
synonym: "spinal cord central canal" EXACT []
synonym: "ventricle of spinal cord" EXACT [FMA:78497]
xref: EHDAA2:0004361
xref: FMA:78497
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png
xref: MA:0001117
xref: ncithesaurus:Central_Canal
xref: NIF_GrossAnatomy:birnlex_1409
xref: SCTID:279447004
xref: TAO:0000938
xref: ZFA:0000938
is_a: UBERON:0004111 {source="cjm"} ! anatomical conduit
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0001049 ! neural tube
relationship: has_part UBERON:0001359 ! cerebrospinal fluid
relationship: part_of UBERON:0002240 {source="MA"} ! spinal cord
relationship: part_of UBERON:0005281 {source="FMA"} ! ventricular system of central nervous system
[Term]
id: UBERON:0002292
name: costovertebral joint
def: "The costovertebral joints are the articulations that connect the heads of the ribs with the bodies of the thoracic vertebrae. Joining of ribs to the vertebrae occurs at two places, the head and the tubercle of the rib. Two convex facets from the head attach to two adjacent vertebrae. This forms a trochoid joint, which is strengthened by the ligament of the head and the intercapital ligament. Articulation of the tubercle is to the transverse process of the adjacent vertebrae. This articulation is reinforced by the dorsal costotransverse ligament. [WP,unvetted]." [Wikipedia:Costovertebral_joint]
comment: AO notes: FMA has both this and joint of head of rib
subset: uberon_slim
synonym: "costal head joint" RELATED [FMA:7951]
synonym: "costocorporeal joint" RELATED [FMA:7951]
synonym: "costovertebral synovial joint" EXACT [FMA:10382]
synonym: "joint of costal head" RELATED [FMA:7951]
synonym: "joint of head of rib" RELATED [FMA:7951]
xref: EMAPA:19020
xref: EMAPA:19208
xref: FMA:10382
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray312.png/200px-Gray312.png
xref: MA:0001510
xref: ncithesaurus:Costovertebral_Joint
xref: SCTID:263315000
is_a: UBERON:0002001 {source="MA"} ! joint of rib
is_a: UBERON:0002217 {source="FMA"} ! synovial joint
relationship: connects UBERON:0002230 ! head of rib
relationship: connects UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0002293
name: costochondral joint
def: "A bars of hyaline cartilage located between the distal part of a rib and a costal cartilage, connecting the ribs to the sternum ." [HP:0000920, Wikipedia:Costochondral_joint]
comment: Taxon notes: In humans, Joints between costal cartilages of ribs 6-9 are plane synovial joints. Articulation between costal cartilage of rib 9 and rib 10 is fibrous
subset: uberon_slim
synonym: "articulatio costochondralis" EXACT [FMA:7956, FMA:TA]
synonym: "articulationes costochondrales" RELATED LATIN [Wikipedia:Costochondral_joint]
synonym: "chondrocostal synchondrosis" EXACT [FMA:7956]
synonym: "costochondral junction" EXACT [FMA:7956, HP:0000920]
synonym: "costochondral synchondrosis" EXACT [FMA:7956]
xref: FMA:7956
xref: MA:0001509
xref: ncithesaurus:Costochondral_Joint
xref: OpenCyc:Mx4rvfy27JwpEbGdrcN5Y29ycA
xref: SCTID:282413008
is_a: UBERON:0002001 {source="MA"} ! joint of rib
is_a: UBERON:0002215 {source="FMA"} ! synchondrosis
relationship: connects UBERON:0002236 ! costal cartilage
relationship: connects UBERON:0010424 ! distal segment of rib
[Term]
id: UBERON:0002294
name: biliary system
def: "Anatomical system that consists of the organs and ducts (bile ducts, gallbladder, and associated structures) that are involved in the production and transportation of bile." [Wikipedia:Biliary_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "biliary apparatus" EXACT []
xref: FMA:79646
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: SCTID:361354009
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: part_of UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0002295
name: scala media
def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Scala media houses the organ of Corti. [WP,unvetted]." [Wikipedia:Scala_media]
comment: TODO: check cochlear duct vs cochlear aqueduct vs scala media
subset: uberon_slim
synonym: "cochlear duct" RELATED []
xref: EHDAA2:0000262
xref: FMA:79789
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Gray928.png/200px-Gray928.png
xref: MA:0002458
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001844 ! cochlea
[Term]
id: UBERON:0002296
name: dorsal mesentery
def: "The mesentery that originates from the dorsal side of the peritoneal cavity[ZFA]." [Wikipedia:Dorsal_mesentery, Wikipedia:Mesentery#Development, ZFIN:curator]
subset: uberon_slim
subset: vertebrate_core
synonym: "dorsal mesogastrium" RELATED [Wikipedia:Dorsal_mesentery]
synonym: "mesenterium dorsale commune" RELATED LATIN [Wikipedia:Dorsal_mesentery]
xref: EHDAA2:0004560
xref: EHDAA:3019
xref: EHDAA:3033
xref: EHDAA:3921
xref: EHDAA:3934
xref: EHDAA:3957
xref: EHDAA:3971
xref: FMA:79795
xref: http://upload.wikimedia.org/wikipedia/commons/8/85/Gray985.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Gray985.png/200px-Gray985.png
xref: SCTID:308823000
xref: TAO:0005130
xref: ZFA:0005130
property_value: UBPROP:0000001 "The mesentery that originates from the dorsal side of the peritoneal cavity.[TAO]" xsd:string
is_a: UBERON:0002050 {source="FMA"} ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_into UBERON:0002095 ! mesentery
relationship: part_of UBERON:0009664 {source="EHDAA2"} ! gut mesentery
[Term]
id: UBERON:0002297
name: cerumen
def: "." [Wikipedia:Cerumen]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ear wax" EXACT []
xref: ENVO:02000028
xref: FMA:79869
xref: GAID:1158
xref: MA:0002506
xref: MESH:A.12.200.147
xref: ncithesaurus:Cerumen
is_a: UBERON:0000456 ! bodily secretion
[Term]
id: UBERON:0002298
name: brainstem
def: "Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,adopted]." [ISBN10:0471888893, Wikipedia:Brainstem, ZFA:0001707]
comment: 'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN10:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions).
subset: loose_concept
subset: uberon_slim
subset: vertebrate_core
synonym: "brain stem" EXACT [ABA:BS]
synonym: "truncus encephali" EXACT LATIN [Wikipedia:Brainstem]
synonym: "truncus encephalicus" RELATED [BTO:0000146]
xref: ABA:BS
xref: BTO:0000146
xref: EFO:0001962
xref: EV:0100241
xref: FMA:79876
xref: http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png
xref: MA:0000169
xref: MESH:A.08.186.211.132
xref: ncithesaurus:Brain_Stem
xref: NIF_GrossAnatomy:birnlex_1565
xref: SCTID:180925009
xref: TAO:0002156
xref: VHOG:0001457
xref: ZFA:0001707
property_value: "spatially_disjoint_from" UBERON:0001890
property_value: "spatially_disjoint_from" UBERON:0002037
property_value: "spatially_disjoint_from" UBERON:0002314
property_value: UBPROP:0000001 "Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain.[TAO]" xsd:string
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: continuous_with UBERON:0002240 ! spinal cord
relationship: has_part UBERON:0001896 ! medulla oblongata
relationship: has_part UBERON:0001943 ! midbrain tegmentum
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002299
name: alveolus of lung
def: "Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [Wikipedia:Pulmonary_alveolus]
subset: uberon_slim
synonym: "alveoli" RELATED PLURAL [BTO:0000060]
synonym: "alveolus" BROAD []
synonym: "alveolus pulmonis" EXACT [Wikipedia:Pulmonary_alveolus]
synonym: "alveolus pulmonis" RELATED LATIN [Wikipedia:Pulmonary_alveolus]
synonym: "lung alveolus" EXACT []
synonym: "pulmonary alveolus" EXACT [FMA:7318]
xref: BTO:0000060
xref: EFO:0001985
xref: EMAPA:19182
xref: EMAPA:19184
xref: EMAPA:19186
xref: EMAPA:19188
xref: EMAPA:19190
xref: EV:0100043
xref: FMA:7318
xref: GAID:349
xref: http://upload.wikimedia.org/wikipedia/commons/4/46/Alveolus_diagram.svg
xref: MA:0000420
xref: MESH:A.04.411.715
xref: SCTID:361364000
xref: VHOG:0001445
is_a: UBERON:0003215 ! alveolus
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002048
intersection_of: UBERON:0003215 ! alveolus
intersection_of: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002169 {source="FMA"} ! alveolar sac
relationship: part_of UBERON:0006524 {source="MA"} ! alveolar system
[Term]
id: UBERON:0002300
name: ventricle
def: "A chamber of an organ with cavitated organ parts. Examples: right ventricle of heart, lateral ventricle of brain." [Wikipedia:Ventricle_of_the_larynx]
is_obsolete: true
[Term]
id: UBERON:0002301
name: layer of neocortex
comment: This class was created automatically from a combination of ontologies
synonym: "cerebral cortex layer" RELATED [MA:0000186]
synonym: "cortical layer" EXACT []
synonym: "neocortex layer" EXACT []
xref: ABA:CTX1-6b
xref: FMA:83138
xref: MA:0000186
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0002302
name: myocardium of atrium
def: "A myocardium that is part of a cardiac atrium [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "atrial myocardium" EXACT []
synonym: "atrium myocardium" EXACT []
synonym: "atrium of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "atrium of heart heart muscle" EXACT [OBOL:automatic]
synonym: "atrium of heart heart myocardium" EXACT [OBOL:automatic]
synonym: "atrium of heart muscle of heart" EXACT [OBOL:automatic]
synonym: "atrium of heart myocardium" EXACT [OBOL:automatic]
synonym: "Cardiac atria cardiac muscle" EXACT [OBOL:automatic]
synonym: "Cardiac atria heart muscle" EXACT [OBOL:automatic]
synonym: "Cardiac atria heart myocardium" EXACT [OBOL:automatic]
synonym: "Cardiac atria muscle of heart" EXACT [OBOL:automatic]
synonym: "Cardiac atria myocardium" EXACT [OBOL:automatic]
synonym: "cardiac atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac atrium heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac atrium heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac atrium muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac atrium myocardium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of Cardiac atria" EXACT [OBOL:automatic]
synonym: "cardiac muscle of cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart atrium" EXACT [OBOL:automatic]
synonym: "heart atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart atrium heart muscle" EXACT [OBOL:automatic]
synonym: "heart atrium heart myocardium" EXACT [OBOL:automatic]
synonym: "heart atrium muscle of heart" EXACT [OBOL:automatic]
synonym: "heart atrium myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle of atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle of Cardiac atria" EXACT [OBOL:automatic]
synonym: "heart muscle of cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart muscle of heart atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium of atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium of Cardiac atria" EXACT [OBOL:automatic]
synonym: "heart myocardium of cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium of heart atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart of atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart of Cardiac atria" EXACT [OBOL:automatic]
synonym: "muscle of heart of cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart of heart atrium" EXACT [OBOL:automatic]
synonym: "myocardium of atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium of Cardiac atria" EXACT [OBOL:automatic]
synonym: "myocardium of cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium of heart atrium" EXACT [OBOL:automatic]
xref: EFO:0003087
xref: FMA:83509
xref: MA:0000081
xref: SCTID:191910002
xref: TAO:0001374
xref: VHOG:0000602
xref: ZFA:0001374
is_a: UBERON:0002349 ! myocardium
relationship: part_of UBERON:0002081
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0002303
name: juxtaglomerular apparatus
def: "An anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]. a microscopic structure in the kidney, which regulates the function of each nephron. The juxtaglomerular apparatus is named for its proximity to the glomerulus: it is found between the vascular pole of the renal corpuscle and the returning distal convoluted tubule of the same nephron. This location is critical to its function in regulating renal blood flow and glomerular filtration rate. The three cellular components of the apparatus are the macula densa, extraglomerular mesangial cells, and juxtaglomerular cells (also known as granular cells)[WP]." [GO:0072206, Wikipedia:Juxtaglomerular_apparatus]
subset: uberon_slim
synonym: "juxtaglomerular complex" EXACT []
xref: EMAPA:30449
xref: FMA:83599
xref: GAID:432
xref: MA:0002546
xref: MESH:A.05.810.453.736.520.520
xref: ncithesaurus:Juxtaglomerular_Apparatus
xref: SCTID:362219002
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0002304
name: layer of dentate gyrus
comment: This class was created automatically from a combination of ontologies
synonym: "dentate gyrus layer" EXACT []
xref: FMA:83678
xref: MA:0002429
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation
[Term]
id: UBERON:0002305
name: layer of hippocampus
def: "the layers of the laminar structure of the hippocampus." [MP:0000813, Wikipedia:Hippocampus_anatomy#Hippocampal_Cells_and_Layers]
comment: TODO - check NIF xref
synonym: "cytoarchitectural fields of hippocampal formation" EXACT [NIF_GrossAnatomy:birnlex_1192]
synonym: "hippocampus layer" EXACT []
xref: FMA:83679
xref: MA:0002427
xref: NIF_GrossAnatomy:birnlex_1192
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001954 ! Ammon's horn
[Term]
id: UBERON:0002306
name: nasal mucus
def: "In the respiratory system mucus aids in the protection of the lungs by trapping foreign particles that enter it, particularly through the nose, during normal breathing. Phlegm is a specialized term for mucus that is restricted to the respiratory tract, while the term mucus more globally describes secretions of the nasal passages as well." [Wikipedia:Nasal_mucus#Respiratory_system]
comment: TODO - split nasal vs respiratory tract?
subset: uberon_slim
synonym: "respiratory mucus" EXACT [BTO:0003603]
xref: BTO:0003603
xref: FMA:83688
xref: MA:0002535
xref: ncithesaurus:Nasal_Mucus
is_a: UBERON:0000912 ! mucus
relationship: secreted_by UBERON:0004785 ! respiratory system mucosa
[Term]
id: UBERON:0002307
name: choroid plexus of lateral ventricle
def: "A choroid plexus that is part of a lateral ventricle [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic]
synonym: "chorioid plexus of lateral ventricle" EXACT []
synonym: "choroid plexus telencephalic ventricle" EXACT [ZFA:0001447]
synonym: "lateral ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "lateral ventricle choroid plexus" EXACT []
xref: EHDAA2:0004449
xref: FMA:83711
xref: MA:0000961
xref: ncithesaurus:Choroid_Plexus_of_the_Lateral_Ventricle
xref: SCTID:70064002
xref: TAO:0001447
xref: VHOG:0001376
xref: ZFA:0001447
is_a: UBERON:0001886 ! choroid plexus
relationship: part_of UBERON:0002285
intersection_of: UBERON:0001886 ! choroid plexus
intersection_of: part_of UBERON:0002285 ! lateral ventricle
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0002308
name: nucleus of brain
def: "Nucleus of neuraxis which is located within the brain. Example: pontobulbar nucleus, globose nucleus[FMA]. brain structure consisting of a relatively compact cluster of neurons. It is one of the two most common forms of nerve cell organization, the other being layered structures such as the cerebral cortex or cerebellar cortex. In anatomical sections, a nucleus shows up as a region of gray matter, often bordered by white matter. The vertebrate brain contains hundreds of distinguishable nuclei, varying widely in shape and size. A nucleus may itself have a complex internal structure, with multiple types of neurons arranged in clumps (subnuclei) or layers.[Wikipedia]" [FMA:83840, Wikipedia:Nucleus_(neuroanatomy)]
comment: We considered merging with 'neural nucleus'
synonym: "brain nucleus" EXACT []
xref: FMA:83840
xref: MA:0000811
xref: ncithesaurus:Brain_Nucleus
xref: SCTID:426465002
xref: ZFA:0005575
is_a: UBERON:0000125 ! neural nucleus
is_a: UBERON:0002616 ! regional part of brain
relationship: part_of UBERON:0000955
intersection_of: UBERON:0000125 ! neural nucleus
intersection_of: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002309
name: medial longitudinal fasciculus
def: "The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts, one on each side of the brainstem. These bundles of axons are situated near the midline of the brainstem and are composed of both ascending and descending fibers that arise from a number of sources and terminate in different areas. [WP,unvetted]." [Wikipedia:Medial_longitudinal_fasciculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "fasciculus longitudinalis medialis" RELATED LATIN [Wikipedia:Medial_longitudinal_fasciculus]
synonym: "MLF" RELATED [ZFA:0000543]
xref: BTO:0003951
xref: FMA:83846
xref: http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Gray711.png/200px-Gray711.png
xref: SCTID:362397001
xref: TAO:0000543
xref: ZFA:0000543
is_a: UBERON:0005838 ! fasciculus of brain
[Term]
id: UBERON:0002310
name: hippocampus fimbria
def: "A prominent band of white matter along the medial edge of the hippocampus[WP]." [Wikipedia:Fimbria_of_hippocampus]
comment: This class was created automatically from a combination of ontologies
synonym: "fimbria" EXACT [NIF_GrossAnatomy:birnlex_1502]
synonym: "fimbria hippocampi" RELATED LATIN [Wikipedia:Fimbria_of_hippocampus]
synonym: "fimbria hippocampus" EXACT []
synonym: "fimbria of hippocampus" EXACT [FMA:83866]
synonym: "fimbria of the fornix" EXACT [NIF_GrossAnatomy:birnlex_1502]
synonym: "fimbria-fornix" EXACT [NIF_GrossAnatomy:birnlex_1502]
synonym: "hippocampal fimbria" EXACT [MP:0009324]
synonym: "neuraxis fimbria" EXACT []
xref: BM:Tel-FI
xref: FMA:83866
xref: http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray749.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray749.png/200px-Gray749.png
xref: MA:0000949
xref: ncithesaurus:Fimbria
xref: NIF_GrossAnatomy:birnlex_1502
xref: SCTID:369096000
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001954 {source="MA"} ! Ammon's horn
[Term]
id: UBERON:0002311
name: nodulus of cerebellum
is_obsolete: true
replaced_by: UBERON:0004083
[Term]
id: UBERON:0002313
name: hippocampus pyramidal layer
alt_id: UBERON:0005369
def: "A cytoarchitectural term denoting the layer of the hippocampus in which pyramidal cells are predominant. Its location is superficial to the Stratum oriens; it is deep to the Stratum radiatum in area CA1 and area CA2 and deep to the Stratum lucidum in area CA3 (Stephan-75) (NeuroNames)." [NIF_GrossAnatomy:birnlex_1444]
synonym: "hippocampus stratum pyramidale" RELATED []
synonym: "pyramidal cell layer of the hippocampus" EXACT [NIF_GrossAnatomy:birnlex_1444]
synonym: "pyramidal layer of hippocampus" EXACT [FMA:83895]
synonym: "stratum pyramidale" EXACT [NIF_GrossAnatomy:birnlex_1444]
synonym: "stratum pyramidale hippocampi" EXACT [NIF_GrossAnatomy:birnlex_1444]
xref: BTO:0001066
xref: FMA:83895
xref: MA:0000956
xref: NIF_GrossAnatomy:birnlex_1444
is_a: UBERON:0002305 ! layer of hippocampus
[Term]
id: UBERON:0002314
name: midbrain tectum
def: "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei [MM, NIF]. The tectum is a region of the brain, specifically the dorsal part of the mesencephalon (midbrain). This is contrasted with the tegmentum, which refers to the region ventral to the ventricular system. It is derived in embryonic development from the alar plate of the neural tube. [WP,unvetted]." [NIF_GrossAnatomy:birnlex_1032, Wikipedia:Midbrain_tectum]
comment: In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi[WP].
subset: uberon_slim
synonym: "mesencephalic tectum" EXACT [ZFA:0000445]
synonym: "neuraxis tectum" EXACT []
synonym: "t. mesencephali" RELATED LATIN [Wikipedia:Midbrain_tectum]
synonym: "tectum" EXACT []
synonym: "tectum mesencephali" EXACT [BTO:0001793]
xref: BM:MB-Tec
xref: BTO:0001793
xref: EFO:0000920
xref: EHDAA2:0004474
xref: EMAPA:19051
xref: FMA:83902
xref: http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray685.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray685.png/200px-Gray685.png
xref: MA:0000211
xref: MAT:0000451
xref: ncithesaurus:Tectum_Mesencephali
xref: NIF_GrossAnatomy:birnlex_1032
xref: SCTID:362394008
xref: TAO:0001353
xref: VHOG:0001388
is_a: UBERON:0002950 ! regional part of midbrain
relationship: develops_from UBERON:0005882 ! alar plate
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0002315
name: gray matter of spinal cord
def: "the ridge-shaped grey matter of the spinal cord that extends longitudunally through the center of each half of the spinal cord, and are largely or entirely composed of nerve cell bodies and their dendrites and some supportive tissue." [MP:0008503]
synonym: "gray matter of neuraxis of spinal cord" EXACT [OBOL:automatic]
synonym: "grey matter of spinal cord" EXACT []
synonym: "grey substance of spinal cord" EXACT []
synonym: "spinal cord gray matter" EXACT [OBOL:automatic]
synonym: "spinal cord gray matter of neuraxis" EXACT [OBOL:automatic]
synonym: "spinal cord grey matter" EXACT []
synonym: "spinal cord grey substance" EXACT [OBOL:automatic]
xref: FMA:256580
xref: MA:0000002
xref: ncithesaurus:Gray_Matter_of_the_Spinal_Cord
xref: NIF_GrossAnatomy:nlx_anat_100204
xref: SCTID:279441003
is_a: UBERON:0002020 ! gray matter of neuraxis
relationship: part_of UBERON:0002240
intersection_of: UBERON:0002020 ! gray matter of neuraxis
intersection_of: part_of UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002316
name: white matter
def: "Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "substantia alba" RELATED LATIN [Wikipedia:White_matter]
synonym: "white matter of neuraxis" EXACT [FMA:83929]
synonym: "white substance" EXACT []
xref: AEO:0000139
xref: FMA:83929
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Grey_matter_and_white_matter_-_very_high_mag.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png
xref: MA:0001135
xref: ncithesaurus:White_Matter
xref: NIF_GrossAnatomy:Class_2
xref: OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA
xref: TAO:0000145
xref: TAO:0002142
xref: TAO:0002143
xref: VHOG:0001764
xref: ZFA:0001682
property_value: UBPROP:0000001 "Multi-tissue structure comprised largely of myelinated axons.[TAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0002317
name: white matter of cerebellum
comment: note that in NIF this is a composite structure; in MA and FMA it is explicitly part of cerebellum. This leads to consistency problems with strict parcellation schemes like ABA, see cerebellar peduncles. In NIF this is a composite structure, this is followed partially here in weakening the relationship to overlaps
subset: vertebrate_core
synonym: "cerebellar white matter" EXACT []
synonym: "cerebellum white matter" EXACT []
xref: FMA:83943
xref: MA:0002430
xref: ncithesaurus:Cerebellum_White_Matter
xref: NIF_GrossAnatomy:birnlex_1562
xref: SCTID:362412009
xref: TAO:0002183
xref: ZFA:0001708
property_value: UBPROP:0000001 "CNS white matter that is part of the cerebellum.[TAO]" xsd:string
is_a: UBERON:0002316 ! white matter
relationship: overlaps UBERON:0002037 {source="FMA-weakened", source="MA-weakened"} ! cerebellum
[Term]
id: UBERON:0002318
name: white matter of spinal cord
def: "the regions of the spinal cord that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008027]
comment: This class was created automatically from a combination of ontologies
synonym: "spinal cord white matter" EXACT []
synonym: "spinal cord white matter of neuraxis" EXACT [OBOL:automatic]
synonym: "spinal cord white substance" EXACT [OBOL:automatic]
synonym: "white matter of neuraxis of spinal cord" EXACT [OBOL:automatic]
synonym: "white substance of spinal cord" EXACT [OBOL:automatic]
xref: FMA:83945
xref: MA:0000910
xref: ncithesaurus:White_Matter_of_the_Spinal_Cord
xref: SCTID:279436006
is_a: UBERON:0002316 ! white matter
relationship: part_of UBERON:0002240
intersection_of: UBERON:0002316 ! white matter
intersection_of: part_of UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002319
name: mesangium
def: "inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." [http://sourceforge.net/tracker/?group_id=76834&atid=974957, Wikipedia:Mesangium]
comment: WP considers this the same as glomerular mesangium. In MA, glomerular and extraglomerular are distingsuished.
subset: uberon_slim
xref: BTO:0002494
xref: EMAPA:28248
xref: FMA:84139
xref: MA:0002617
xref: MESH:A.05.810.453.736.520.380
xref: ncithesaurus:Mesangium
is_a: UBERON:0003567 ! abdomen connective tissue
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000074 ! renal glomerulus
relationship: part_of UBERON:0005215 ! kidney interstitium
[Term]
id: UBERON:0002320
name: glomerular mesangium
def: "A thin membrane which helps to support the capillary loops in a renal glomerulus. It is connective tissue composed of mesangial cells - myofibroblasts phenotypically related to vascular smooth muscle cells (MUSCLE, SMOOTH, VASCULAR), PHAGOCYTES and the mesangial EXTRACELLULAR MATRIX." [MESH:A.05.810.453.736.520.380, Wikipedia:Glomerular_mesangium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EMAPA:27961
xref: EMAPA:28248
xref: FMA:84140
xref: GAID:430
xref: MA:0002606
xref: MESH:A.05.810.453.736.520.380
xref: SCTID:244574009
is_a: UBERON:0003567 ! abdomen connective tissue
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002319 ! mesangium
relationship: part_of UBERON:0004190 {source="GO"} ! glomerulus vasculature
[Term]
id: UBERON:0002321
name: extraglomerular mesangium
comment: editor note - check MA part_ofs - should be spatially disjoint from renal glomerulus?
xref: EMAPA:28278
xref: FMA:84141
xref: MA:0002602
is_a: UBERON:0003567 ! abdomen connective tissue
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: overlaps UBERON:0000074 ! renal glomerulus
relationship: part_of UBERON:0001229 {source="MA"} ! renal corpuscle
relationship: part_of UBERON:0002303 {source="MA"} ! juxtaglomerular apparatus
relationship: part_of UBERON:0002319 {source="MA"} ! mesangium
[Term]
id: UBERON:0002322
name: periventricular nucleus
def: "." [Wikipedia:Periventricular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "ventral zone of periventricular hypothalamus" EXACT [ZFA:0000260]
xref: FMA:84354
xref: TAO:0000260
xref: ZFA:0000260
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002323
name: body cavity
alt_id: UBERON:0000169
def: "A fluid-filled space formed within he mesoderm[WP]." [Wikipedia:Body_cavity, Wikipedia:Coelem]
comment: Taxon notes: In mammals it forms the peritoneal, pleural, and pericardial cavities. editor note: check the FMA placement here; add developmental relationships; check EHDAA2
subset: uberon_slim
subset: vertebrate_core
synonym: "celom" RELATED [BTO:0001707]
synonym: "coelom" EXACT []
synonym: "coelome" RELATED [BTO:0001707]
synonym: "coelomic cavity" EXACT []
synonym: "coelomic cavity" EXACT [EHDAA2:0000267]
synonym: "hemocoel" RELATED [FBbt:00005060]
synonym: "space of body compartment" EXACT [FMA:85006]
synonym: "ventral body cavity" NARROW []
xref: AEO:0000186
xref: BTO:0001707
xref: EHDAA2:0000267
xref: FBbt:00005060
xref: FMA:85006
xref: galen:BodyCavity
xref: MA:0002447
xref: ncithesaurus:Cavity
xref: RETIRED_EHDAA2:0003186
xref: SCTID:361348008
xref: TAO:0001438
xref: ZFA:0001438
is_a: UBERON:0002553 ! anatomical cavity
is_a: UBERON:0004458 {notes="pre-inferred via union_of"} ! body cavity or lining
relationship: develops_from UBERON:0003886 {evidence="definitional"} ! body cavity precursor
[Term]
id: UBERON:0002324
name: muscle of back
def: "A muscle organ that is part of a back [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "back muscle" EXACT []
synonym: "back muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of back" EXACT [OBOL:automatic]
xref: FMA:85216
xref: MA:0000496
is_a: UBERON:0001774 ! muscle of trunk
is_a: UBERON:0005174 ! back organ
relationship: part_of UBERON:0001137
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001137 ! dorsum
relationship: part_of UBERON:0001137 ! dorsum
[Term]
id: UBERON:0002325
name: epithelium of urethra
def: "The urethra is a renal system organ that carries urine from the bladder to outside the body. The epithelium is the tubular, planar layer of cells through which the urine passes.." [GO:0061071]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of urethra" EXACT [OBOL:automatic]
synonym: "urethra epithelial tissue" EXACT [OBOL:automatic]
synonym: "urethra epithelium" EXACT []
synonym: "urethral epithelium" RELATED []
xref: FMA:85275
xref: MA:0001686
xref: ncithesaurus:Urethra_Epithelium
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003914 {source="GO"} ! epithelial tube
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0006555 ! excretory tube
relationship: part_of UBERON:0000057
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0002326
name: lamina propria of urethra
def: "A lamina propria that is part of a urethra [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "lamina propria mucosa of urethra" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of urethra" EXACT [OBOL:automatic]
synonym: "urethra lamina propria" EXACT []
synonym: "urethra lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "urethra lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "urethral lamina propria" RELATED []
xref: FMA:85276
xref: MA:0001689
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000057
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0001008 ! excretory system
[Term]
id: UBERON:0002327
name: trunk of intercostal nerve
comment: This class was created automatically from a combination of ontologies
synonym: "intercostal nerve trunk" EXACT []
synonym: "intercostal neural trunk" EXACT []
xref: FMA:85315
xref: MA:0001176
is_a: UBERON:0001147 ! trunk of peripheral nerve
[Term]
id: UBERON:0002328
name: notochord
def: "a flexible rod-shaped body found in embryos of all chordates. It is composed of cells derived from the mesoderm and defines the primitive axis of the embryo. In some chordates, it persists throughout life as the main axial support of the body, while in most vertebrates it becomes the nucleus pulposus of the intervertebral disc. The notochord is found ventral to the neural tube.." [http://tolweb.org/Chordata/2499, https://github.com/cmungall/uberon/issues/25, ISBN:0815318960, Wikipedia:Notochord]
comment: Development notes: In between vertebra the notochord becomes the nucleus pulposus, under it degenerates, and at anterior end in some species its tissue merges with some of the cranial bones.. Some organisms retain a post-embryonic notochord. // The notochord appears early in embryogeny and plays an important role in promoting or organizing the embryonic development of nearby structures. In most adult chordates the notochord disappears or becomes highly modified. In some non-vertebrate chordates and fishes the notochord persists as a laterally flexible but incompressible skeletal rod that prevents telescopic collapse of the body during swimming[TOLWEB]
subset: uberon_slim
subset: vertebrate_core
synonym: "embryonic notocord" EXACT []
synonym: "notochorda" RELATED LATIN [Wikipedia:Notochord]
synonym: "notocord" EXACT [ZFA:0000135]
xref: AAO:0000327
xref: BTO:0001768
xref: EHDAA2:0001277
xref: EHDAA:1241
xref: EHDAA:6021
xref: EMAPA:16191
xref: EV:0100002
xref: FMA:85521
xref: GAID:1311
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: MAT:0000281
xref: MESH:A.16.254.610
xref: ncithesaurus:Notochord
xref: SCTID:308820002
xref: TAO:0000135
xref: VHOG:0000199
xref: VSAO:0000032
xref: XAO:0000055
xref: ZFA:0000135
property_value: UBPROP:0000001 "Avascular multi-tissue structure composed of large vacuolated epithelial cells (chordablasts) and perichordal fibrous tissue.[VSAO]" xsd:string
property_value: UBPROP:0000001 "Rod-like principal supportive element of the embryo and larva, present in the midline just ventral to the neural tube, and differentiating during the segmentation period to form large vacuolated epithelial cells and a surrounding a sheath of fibrous and elastic layers. Layering of the sheath may differ in structure, thickness and development among groups; in cypriniforms there are actually three very thin layers to the sheath. A functional, well developed notochord is present throughout life in certain basal fish groups but not in cypriniforms. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000001 "Slender rod of fibrous connective tissue surrounding a core of fluid-filled cells of mesodermal origin; it lies above the gut and directly beneath the spinal cord. The notochord is present during early development and in a few cases it is retained through life; however, usually the notochord is replaced by the vertebral column.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: differentiates_from mesoderm (AAO:0000304) CHANGED TO: develops_from mesoderm (UBERON:0000926)[AAO]" xsd:string
is_a: UBERON:0000481 {source="VSAO"} ! multi-tissue structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0004880 {source="ZFA"} ! chordamesoderm
relationship: develops_from UBERON:0006267 {source="EHDAA2"} ! notochordal plate
relationship: dorsal_to UBERON:0001049 ! neural tube
relationship: existence_starts_during UBERON:0000068 ! embryo stage
relationship: part_of UBERON:0000922 {gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! embryo
relationship: part_of UBERON:0011137 ! axial skeletal system
relationship: ventral_to UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0002329
name: somite
def: "A segmental mass of mesoderm in the vertebrate embryo, occurring in pairs along the notochord and developing into muscles and vertebrae[BTO]. Portion of mesoderm distributed along the two sides of the neural tube and that will eventually become dermis (dermatome), skeletal muscle (myotome), and vertebrae (sclerotome)[WP]. In Zebrafish: Any of the approximately 45 bilaterally paired blocks of mesoderm cells, lying on either side of the notochord and neural tube, and forming sequentially starting at the head during development of the embryo. Together they give rise to the axial skeleton (from the sclerotome), associated musculature (from the myotome), and dermis (from the dermatome). // Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. Kimmel et al, 1995." [BTO:0001558, OMD:somite, Wikipedia:Somite, XB:curator, ZFIN:curator]
comment: Editor notes: currently classified as an epithelial vesicle, consistent with EHDAA2 and UBERONREF:0000002. Consider making "somitic mesoderm" a separate term and correlate with regionalization processes. Consider moving ZFA term to 'trunk somite' as it is part of the trunk // When the somite becomes segmented from the segmental plate, it is composed of an epithelial sac enclosing mesenchymal somitocoel cells. Thereafter the somite differentiates into two parts, the ventro-medial mesenchymal sclerotome and the dorso-lateral epithelial dermomyotome. This change in the epithelial somite depends on surrounding tissue [PMID:15906248]
subset: uberon_slim
subset: vertebrate_core
synonym: "epithelial somite" RELATED [UBERONREF:0000002]
synonym: "mesodermal cluster" EXACT [GO:0001756]
synonym: "somites" RELATED PLURAL []
synonym: "somitic mesoderm" RELATED []
synonym: "somitus" RELATED LATIN [Wikipedia:Somite]
xref: AAO:0010569
xref: BTO:0001558
xref: EHDAA2:0003436
xref: EHDAA:366
xref: EHDAA:699
xref: FMA:85522
xref: GAID:1306
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: MAT:0000068
xref: MESH:A.16.254.425.660.750
xref: MIAA:0000068
xref: ncithesaurus:Somite
xref: TAO:0000155
xref: VHOG:0000191
xref: XAO:0000058
xref: ZFA:0000155
property_value: RO:0002161 NCBITaxon:7712
property_value: UBPROP:0000001 "Post-cranial axial segments which form sclerotome and dermomyotome.[AAO]" xsd:string
property_value: UBPROP:0000001 "Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from paraxial mesenchyme (TAO:0000942)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: OBO_REL:part_of trunk (TAO:0001115) CHANGED TO: develops_from trunk (UBERON:0002100)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: part_of paraxial mesoderm (AAO:0010568) CHANGED TO: develops_from paraxial mesoderm (UBERON:0003077)[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0007503 {source="EHDAA2"} ! epithelial vesicle
relationship: develops_from UBERON:0003059 {source="ZFA"} ! presomitic mesoderm
[Term]
id: UBERON:0002330
name: exocrine system
def: "Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]." [Wikipedia:Exocrine_gland]
subset: uberon_slim
synonym: "exocrine glandular system" EXACT [EHDAA2:0002225]
xref: EHDAA2:0002225
xref: FMA:85539
xref: MA:0002411
xref: ncithesaurus:Exocrine_System
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0002331
name: umbilical cord
def: "The connecting cord from the developing embryo or fetus to the placenta. During prenatal development, the umbilical cord comes from the same zygote as the fetus and (in humans) normally contains two arteries (the umbilical arteries) and one vein (the umbilical vein), buried within Wharton's jelly. The umbilical vein supplies the fetus with oxygenated, nutrient-rich blood from the placenta. Conversely, the umbilical arteries return the deoxygenated, nutrient-depleted blood[WP]." [Wikipedia:Umbilical_cord]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "birth cord" RELATED [Wikipedia:Umbilical_cord]
synonym: "connecting stalk" RELATED []
synonym: "funiculus umbilicalis" RELATED LATIN [Wikipedia:Umbilical_cord]
synonym: "yolk stalk" RELATED [BTO:0001415]
xref: BTO:0001415
xref: EFO:0001415
xref: EHDAA2:0000312
xref: EHDAA:158
xref: EMAPA:26115
xref: EV:0100127
xref: FMA:85541
xref: GAID:517
xref: http://upload.wikimedia.org/wikipedia/commons/f/f3/Umbilicalcord.jpg
xref: MAT:0000280
xref: MESH:A.16.254.789
xref: MIAA:0000280
xref: ncithesaurus:Umbilical_Cord
xref: OpenCyc:Mx4rvyewDJwpEbGdrcN5Y29ycA
xref: SCTID:280644003
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0007806 ! connecting stalk
[Term]
id: UBERON:0002333
name: pulmonary trunk
def: "Pulmonary arterial trunk which is continuous with the right ventricle.[FMA]" [FMA:FMA, Wikipedia:Pulmonary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pulmonary artery (trunk)" EXACT []
synonym: "trunk of pulmonary arterial tree" EXACT []
xref: EFO:0001399
xref: EHDAA2:0001576
xref: EHDAA:9831
xref: EMAPA:17015
xref: EMAPA:18240
xref: FMA:8612
xref: galen:PulmonaryTrunk
xref: http://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0002033
xref: OpenCyc:Mx4rv-6d0ZwpEbGdrcN5Y29ycA
xref: VHOG:0001134
is_a: UBERON:0000063 ! organ segment
relationship: continuous_with UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0002334
name: submandibular duct
def: "The submandibular duct (Wharton's duct, submaxillary duct) is one of the salivary ducts. It is about 5 cm. long, and its wall is much thinner than that of the parotid duct. It begins by numerous branches from the deep surface of the gland, and runs forward between the mylohyoideus, hyoglossus, and genioglossus, then between the sublingual gland and the genioglossus, and opens by a narrow orifice on the summit of a small at the side of the frenulum linguæ. On the hyoglossus it lies between the lingual and hypoglossal nerves, but at the anterior border of the muscle it is crossed laterally by the lingual nerve; the terminal branches of the lingual nerve ascend on its medial side. It drains saliva from the submandibular glands and sublingual glands to the sublingual caruncle at the base of the tongue. It was initially described by the English anatomist Thomas Wharton and sometimes referred to by his name. [WP,unvetted]." [Wikipedia:Submandibular_duct]
subset: uberon_slim
synonym: "ductus submaxillaris" RELATED LATIN [Wikipedia:Submandibular_duct]
synonym: "submandibular salivary duct" RELATED []
synonym: "submaxillary duct" RELATED []
xref: BTO:0004556
xref: FMA:86266
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray1024.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray1024.png/200px-Gray1024.png
xref: MA:0002698
xref: ncithesaurus:Submandibular_Duct
xref: SCTID:181237009
is_a: UBERON:0001837 ! duct of salivary gland
relationship: channels_from UBERON:0001736 ! submandibular gland
relationship: part_of UBERON:0001736 ! submandibular gland
[Term]
id: UBERON:0002335
name: macula densa
def: "The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus[GO].." [GO:0072024, Wikipedia:Macula_densa]
subset: uberon_slim
xref: BTO:0003940
xref: FMA:86333
xref: MA:0002603
xref: ncithesaurus:Macula_Densa
xref: SCTID:244657003
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002303 {source="MA"} ! juxtaglomerular apparatus
[Term]
id: UBERON:0002336
name: corpus callosum
def: "The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres[GO]." [Wikipedia:Corpus_callosum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BM:Tel-CC
xref: BTO:0000615
xref: EFO:0001390
xref: EV:0100305
xref: FMA:86464
xref: GAID:683
xref: http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray733.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray733.png/200px-Gray733.png
xref: MA:0000188
xref: MAT:0000286
xref: MESH:A.08.186.211.730.885.362
xref: MIAA:0000286
xref: ncithesaurus:Corpus_Callosum
xref: NIF_GrossAnatomy:birnlex_1087
xref: OpenCyc:Mx4rvbNzdZwpEbGdrcN5Y29ycA
xref: SCTID:362354006
xref: VHOG:0001608
property_value: RO:0002161 NCBITaxon:9255
is_a: UBERON:0002473 ! intercerebral commissure
is_a: UBERON:0005340 ! dorsal telencephalic commissure
[Term]
id: UBERON:0002337
name: endometrial stroma
comment: This class was created automatically from a combination of ontologies
synonym: "endometrium stroma" EXACT []
synonym: "stroma of endometrium" EXACT []
xref: FMA:86487
xref: MA:0002734
xref: ncithesaurus:Endometrial_Stroma
xref: SCTID:254115004
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001295 ! endometrium
[Term]
id: UBERON:0002338
name: lamina propria of bronchus
def: "A lamina propria that is part of a bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchi lamina propria" EXACT [OBOL:automatic]
synonym: "bronchi lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "bronchi lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "bronchial trunk lamina propria" EXACT [OBOL:automatic]
synonym: "bronchial trunk lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "bronchial trunk lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "bronchus lamina propria" EXACT []
synonym: "bronchus lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "bronchus lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of bronchi" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of bronchial trunk" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of bronchus" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of bronchi" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of bronchial trunk" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of bronchus" EXACT [OBOL:automatic]
synonym: "lamina propria of bronchi" EXACT [OBOL:automatic]
synonym: "lamina propria of bronchial trunk" EXACT [OBOL:automatic]
xref: FMA:86619
xref: MA:0001836
xref: ncithesaurus:Bronchus_Lamina_Propria
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004779 ! respiratory system lamina propria
relationship: part_of UBERON:0002185
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0002339
name: epithelium of lobar bronchus
def: "the tissue made up of epithelial cells that lines the inside of the lobar bronchus." [GO:0060481]
synonym: "epithelial tissue of lobar bronchus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of secondary bronchus" EXACT [OBOL:automatic]
synonym: "epithelium of secondary bronchus" EXACT [OBOL:automatic]
synonym: "lobar bronchial epithelium" EXACT []
synonym: "lobar bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "lobar bronchus epithelium" EXACT []
synonym: "secondary bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "secondary bronchus epithelium" EXACT [OBOL:automatic]
xref: EMAPA:17390
xref: EMAPA:17658
xref: EMAPA:17666
xref: EMAPA:17984
xref: EMAPA:17989
xref: EMAPA:17994
xref: EMAPA:18000
xref: FMA:86624
xref: MA:0001842
is_a: UBERON:0000115 ! lung epithelium
is_a: UBERON:0002031 ! epithelium of bronchus
relationship: part_of UBERON:0002183
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002183 ! lobar bronchus
relationship: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0002340
name: epithelium of main bronchus
alt_id: UBERON:0003245
def: "An epithelium that is part of a main bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchus principalis epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchus principalis epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bronchus principalis" EXACT [OBOL:automatic]
synonym: "epithelial tissue of main bronchus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of primary bronchus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of principal bronchus" EXACT [OBOL:automatic]
synonym: "epithelium of bronchus principalis" EXACT [OBOL:automatic]
synonym: "epithelium of primary bronchus" EXACT [OBOL:automatic]
synonym: "epithelium of principal bronchus" EXACT [OBOL:automatic]
synonym: "main bronchial epithelium" EXACT []
synonym: "main bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "main bronchus epithelium" EXACT []
synonym: "primary bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "primary bronchus epithelium" EXACT [OBOL:automatic]
synonym: "principal bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "principal bronchus epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0001047
xref: EHDAA:5003
xref: EMAPA:16851
xref: FMA:86625
xref: MA:0001847
xref: VHOG:0001034
is_a: UBERON:0002031 ! epithelium of bronchus
relationship: part_of UBERON:0002182
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0002341
name: epithelium of segmental bronchus
def: "An epithelium that is part of a segmental bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of segmental bronchus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "epithelium of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "segmental bronchial epithelium" EXACT []
synonym: "segmental bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "segmental bronchus epithelium" EXACT []
synonym: "tertiary bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "tertiary bronchus epithelium" EXACT [OBOL:automatic]
xref: FMA:86626
xref: MA:0001850
is_a: UBERON:0000115 ! lung epithelium
is_a: UBERON:0002031 ! epithelium of bronchus
relationship: part_of UBERON:0002184
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002184 ! segmental bronchus
relationship: part_of UBERON:0002184 ! segmental bronchus
[Term]
id: UBERON:0002342
name: neural crest
def: "The neural crest, a transient component of the ectoderm, is located in between the neural tube and the epidermis (or the free margins of the neural folds) of an embryo during neural tube formation. Neural crest cells quickly migrate during or shortly after neurulation, an embryological event marked by neural tube closure." [Wikipedia:Neural_crest]
comment: Editor note: consider including subclasses for pre- and post- migratory (e.g. sheets/paths/streams). Taxon notes: A well developed neural crest population is present in lampreys (Horigome et al. 1999 ; Tomsa & Langeland, 1999) and gnathostomes. chordate fossils from the early Cambrian (Yunnanozoan and Haikouella) with apparent neural-crest derived structures (pharyngeal denticles and pharyngeal skeletons resembling the striped mucocartilage of the branchial bars in lamprey ammocoete larvae), suggests that neural crest arose very early in vertebrate evolution (Chen et al. 1999; Holland & Chen, 2001). The invertebrate chordates apparently lack defini- tive neural crest. One marker of migrating neural crest in some vertebrates, the antibody HNK1, does not recognize any cells in amphioxus embryos (Holland, unpublished). Even so, in both amphioxus and tunicates, cells at the edges of the neural plate and adjacent nonneural ectoderm share some properties of neural crest[PMID:11523831]. Gene notes: Many factors and genes, such as Pax3 (Tremblay et al., 1995), slug (Nieto et al., 1994), AP-2 (Zhang et al., 1996; Schorle et al., 1996), and Wnt-1/3a (Ikeya et al., 1997) are expressed in the dorsal most region of the neural tube, and have been shown to be involved in the generation of neural crest cells.
subset: uberon_slim
subset: vertebrate_core
synonym: "crista neuralis" RELATED LATIN [Wikipedia:Neural_crest]
xref: AAO:0010578
xref: BTO:0001764
xref: EHDAA2:0004419
xref: FMA:86666
xref: GAID:1310
xref: http://upload.wikimedia.org/wikipedia/commons/8/8f/Neural_Crest.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray644.png/200px-Gray644.png
xref: MAT:0000066
xref: MESH:A.16.254.600
xref: MIAA:0000066
xref: ncithesaurus:Neural_Crest
xref: SCTID:361462002
xref: TAO:0000045
xref: VHOG:0000057
xref: XAO:0000048
xref: ZFA:0000045
property_value: UBPROP:0000001 "A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000001 "Migratory cell population which delaminates from neural tube, borders surface ectoderm and neural ectoderm, and gives rise to many different tissue types.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: differentiates_from ectoderm (AAO:0000137) CHANGED TO: develops_from ectoderm (UBERON:0000924)[AAO]" xsd:string
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010316 ! germ layer / neural crest
relationship: develops_from UBERON:0003075 {source="BTO"} ! neural plate
relationship: develops_from UBERON:0005062 {source="PMID:11523831"} ! neural fold
relationship: existence_starts_during UBERON:0000110 {source="PMID:11523831"} ! neurula stage
relationship: part_of UBERON:0002346 {source="UBERONREF:0000002", source="XAO"} ! neurectoderm
[Term]
id: UBERON:0002343
name: abdomen musculature
def: "Set of all muscles in abdomen." [OBOL:automatic]
comment: note distinction between abdomen muscle and abdomen musculature
subset: vertebrate_core
synonym: "abdominal musculature" EXACT []
synonym: "muscle group of abdomen" EXACT [FMA:71294]
synonym: "muscles of abdomen" EXACT [FMA:71294]
synonym: "musculature of abdomen" EXACT []
synonym: "musculature of abdominal wall" EXACT [FMA:86917]
xref: FMA:71294
xref: FMA:86917
xref: TAO:0001327
xref: ZFA:0001327
is_a: UBERON:0004479 ! musculature of trunk
relationship: part_of UBERON:0000916
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0002345
name: descending thoracic aorta
def: "the part of the aorta that extends from the arch of the aorta to the diaphragm, and from which arises numerous branches that supply oxygenated blood to the chest cage and the organs within the chest." [MP:0009868]
comment: This class was created automatically from a combination of ontologies
xref: EFO:0002527
xref: EMAPA:18605
xref: FMA:87217
xref: MA:0002572
xref: SCTID:181301002
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001514 ! descending aorta
relationship: part_of UBERON:0001515 ! thoracic aorta
[Term]
id: UBERON:0002346
name: neurectoderm
def: "Embryonic ectoderm that gives rise to nervous tissue." [Wikipedia:Neuroectoderm]
comment: Terminology notes: we prefer neurectoderm to neural ectoderm since placodal ectoderm is not classified here
subset: uberon_slim
subset: vertebrate_core
synonym: "epithelium tubi neuralis; neuroectoderma" RELATED LATIN [Wikipedia:Neuroectoderm]
synonym: "neuaral ectoderm" RELATED []
synonym: "neural ectoderm" EXACT []
synonym: "neuroectoderm" EXACT []
synonym: "presumptive central nervous system" RELATED []
xref: AAO:0011074
xref: BILA:0000039
xref: EHDAA2:0001248
xref: EHDAA:1498
xref: EHDAA:255
xref: EMAPA:16073
xref: EV:0100004
xref: FBbt:00001061
xref: FMA:87657
xref: MAT:0000176
xref: MIAA:0000176
xref: ncithesaurus:Neuroectoderm
xref: TAO:0001120
xref: VHOG:0000150
xref: XAO:0000042
xref: ZFA:0001120
is_a: UBERON:0000923 ! germ layer
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0000924 {source="UBERONREF:0000002"} ! ectoderm
[Term]
id: UBERON:0002347
name: thoracic vertebra
def: "In humans, the 12 thoracic vertebrae compose the middle segment of the vertebral column, between the cervical vertebrae and the lumbar vertebrae. They are intermediate in size between those of the cervical and lumbar regions; they increase in size as one proceeds down the spine, the upper vertebrae being much smaller than those in the lower part of the region. They are distinguished by the presence of facets on the sides of the bodies for articulation with the heads of the ribs, and facets on the transverse processes of all, except the eleventh and twelfth, for articulation with the tubercles of the ribs. [WP,unvetted]." [Wikipedia:Thoracic_vertebrae]
subset: uberon_slim
synonym: "dorsal vertebra" EXACT []
synonym: "thorax vertebra" EXACT [OBOL:automatic]
synonym: "vertebra of thorax" EXACT [OBOL:automatic]
synonym: "vertebra thoracica" EXACT []
xref: EMAPA:18011
xref: FMA:9139
xref: GAID:244
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray90.png/200px-Gray90.png
xref: MA:0000314
xref: MESH:A.02.835.232.834.892
xref: ncithesaurus:Thoracic_Vertebra
xref: OpenCyc:Mx4rvdZIBpwpEbGdrcN5Y29ycA
xref: SCTID:181821009
is_a: UBERON:0002412 ! vertebra
is_a: UBERON:0003827 ! thoracic segment bone
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004247 ! back bone
relationship: part_of UBERON:0006073
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0006073 ! thoracic region of vertebral column
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0006073 ! thoracic region of vertebral column
[Term]
id: UBERON:0002348
name: epicardium
def: "Region of visceral serous pericardium which has as its part, the mesothelium, subepicardial layer of epicardium and the fibroelastic connective tissue that is attached to the myocardium and is continuous with the parietal serous pericardium[FMA]. External layer of the heart[ZFA]." [Wikipedia:Epicardium, ZFIN:curator]
comment: TODO - check links with UBERON:0002425 visceral serous pericardium. develops from proepicardium. WP:Epicardium -- When considered as a part of the pericardium, it is the inner layer, or visceral pericardium, continuous with the serous layer.
subset: uberon_slim
subset: vertebrate_core
synonym: "heart epicardium" EXACT []
synonym: "lamina visceralis pericardii serosi" RELATED LATIN [Wikipedia:Epicardium]
synonym: "visceral serous pericardium of heart" EXACT []
synonym: "visceral serous pericardium proper" EXACT [FMA:9461]
xref: AAO:0010409
xref: EHDAA2:0002202
xref: FMA:9461
xref: galen:Epicardium
xref: http://upload.wikimedia.org/wikipedia/commons/1/16/Gray968.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: ncithesaurus:Epicardium
xref: TAO:0005057
xref: VHOG:0000119
xref: XAO:0000316
xref: ZFA:0005057
property_value: UBPROP:0000001 "External layer of the heart.[TAO]" xsd:string
property_value: UBPROP:0000001 "The inner layer of the pericardium that is in contact with the surface of the heart.[AAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0004160 ! proepicardium
relationship: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0002425 ! visceral serous pericardium
[Term]
id: UBERON:0002349
name: myocardium
def: "middle muscular layer of the heart wall[M-W]. Muscle layer of organ which has as its parts the myocardium proper and the conducting system of the heart[FMA]." [Wikipedia:Myocardium]
comment: TODO - check 'Myocardum proper' in FMA. We superclass the more generic class for now. FMA has is_a muscle layer - should we add this? ZFA and BTO both have is_a 'cardiac muscle' (tissue?). But in U we also follow FMA and have cardiac muscle tissue of myocardium (there is also Fibrocollagenous connective tissue of myocardium), which would be identical (see issue-10). Note that GO also treats left/right ventricular cardiac muscle tissue synonymous with ventricular myocardium
subset: uberon_slim
subset: vertebrate_core
synonym: "cardiac muscle" RELATED [ZFA:0001319]
synonym: "heart muscle " RELATED [ZFA:0001319]
synonym: "heart myocardium" EXACT []
synonym: "muscle of heart" EXACT [FMA:9462]
xref: AAO:0010410
xref: BTO:0000901
xref: EFO:0000819
xref: EHDAA2:0004150
xref: EV:0100022
xref: FMA:9462
xref: GAID:173
xref: galen:Myocardium
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Glanzstreifen.jpg/200px-Glanzstreifen.jpg
xref: MA:0000164
xref: MAT:0000453
xref: MESH:A.02.633.580
xref: ncithesaurus:Myocardium
xref: OpenCyc:Mx4ro36AFrCvEduAAAAOpmP6tw
xref: RETIRED_EHDAA2:0001220
xref: SCTID:362012001
xref: TAO:0001319
xref: VHOG:0000083
xref: XAO:0000065
xref: ZFA:0001319
property_value: UBPROP:0000001 "The middle layer of the heart, consisting of cardiac muscle.[AAO]" xsd:string
is_a: UBERON:0005983 ! heart layer
relationship: part_of UBERON:0000383 ! musculature of body
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002350
name: conducting system of heart
def: " The cardiac conduction system consists of specialized cardiomyocytes that regulate the frequency of heart beat[GO]" [GO:0003161]
comment: Editor notes: EHDAA2 divides the system from the tissue
subset: vertebrate_core
synonym: "cardiac conduction system" EXACT []
synonym: "cardiac impulse conducting system" EXACT [GO:0003161]
synonym: "cardionector" EXACT []
synonym: "central conduction system" RELATED []
synonym: "heart conduction system" EXACT [GO:0003161]
synonym: "impulse conducting system" EXACT [MA:0000094]
xref: EFO:0003909
xref: EHDAA2:0004185
xref: EV:0100025
xref: FMA:9476
xref: MA:0000094
xref: MESH:A.07.541.409
xref: SCTID:281489000
xref: TAO:0005063
xref: VHOG:0001271
xref: ZFA:0005063
is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium
is_a: UBERON:0010131 {source="FMA"} ! conducting tissue of heart
relationship: part_of UBERON:0002349 {source="FMA"} ! myocardium
[Term]
id: UBERON:0002351
name: sinoatrial node
def: "The part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node[GO]. Subdivision of conducting system of heart at the junction of the right atrium and the superior vena cava, around the sinoatrial nodal branch of right coronary artery and is continuous with the internodal tract[FMA]." [GO:0003163, Wikipedia:Sinoatrial_node]
comment: WP:Heart states: "The SA node is found in all amniotes but not in more primitive vertebrates. In these animals, the muscles of the heart are relatively continuous and the sinus venosus coordinates the beat which passes in a wave through the remaining chambers. Indeed, since the sinus venosus is incorporated into the right atrium in amniotes, it is likely homologous with the SA node. In teleosts, with their vestigial sinus venosus, the main centre of coordination is, instead, in the atrium.". Note however that ZFA has SA node.
subset: uberon_slim
subset: vertebrate_core
synonym: "cardiac pacemaker" EXACT [FMA:9477]
synonym: "Koch's node" EXACT [FMA:9477]
synonym: "node of Keith-Flack" EXACT [FMA:9477]
synonym: "nodus sinuatrialis" EXACT [FMA:9477, FMA:TA]
synonym: "nodus sinuatrialis" RELATED LATIN [Wikipedia:Sinoatrial_node]
synonym: "SA nodal muscle tissue" EXACT [FMA:9477]
synonym: "SA node" EXACT [FMA:9477]
synonym: "sinoatrial node" EXACT [FMA:9477]
synonym: "sinu-atrial node" EXACT [FMA:9477]
synonym: "sinuatrial nodal muscle tissue" EXACT [FMA:9477]
synonym: "sinuatrial node" EXACT [FMA:9477]
synonym: "sinus node" EXACT [FMA:9477]
synonym: "sinus node of Keith and Flack" EXACT [FMA:9477]
xref: BTO:0004358
xref: EHDAA2:0004184
xref: FMA:9477
xref: GAID:561
xref: http://upload.wikimedia.org/wikipedia/commons/d/de/Sinoatrial_node_2_low_mag.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Sinoatrial_node_low_mag.jpg/200px-Sinoatrial_node_low_mag.jpg
xref: MA:0000097
xref: MESH:A.07.541.409.819
xref: ncithesaurus:Sinoatrial_Node
xref: OpenCyc:Mx4rOhejDGMcEd2AAABQjYGu0g
xref: SCTID:277687007
xref: TAO:0005069
xref: ZFA:0005069
is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium
relationship: part_of UBERON:0002350 {source="ZFA"} ! conducting system of heart
[Term]
id: UBERON:0002352
name: atrioventricular node
def: "Subdivision of conducting system of heart which is located in the muscular part of the interatrial septum that is continuous with the atrioventricular bundle.[FMA]" [FMA:FMA, Wikipedia:Atrioventricular_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "aschoff-tawara node" EXACT []
synonym: "atrioventricular nodal muscle tissue" EXACT []
synonym: "av nodal muscle tissue" EXACT []
synonym: "av node" EXACT []
synonym: "node of tawara" EXACT []
synonym: "nodus atrioventricularis" RELATED LATIN [Wikipedia:Atrioventricular_node]
xref: EFO:0000276
xref: EHDAA2:0004183
xref: FMA:9478
xref: GAID:558
xref: http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray501.png/200px-Gray501.png
xref: MA:0000095
xref: MAT:0000498
xref: MESH:A.07.541.409.147
xref: ncithesaurus:Atrioventricular_Node
xref: OpenCyc:Mx4rMfD91mMcEd2AAABQjYGu0g
xref: SCTID:277688002
xref: TAO:0005070
xref: VHOG:0001474
xref: ZFA:0005070
is_a: UBERON:0004490 ! cardiac muscle tissue of atrium
is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium
relationship: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002350 ! conducting system of heart
[Term]
id: UBERON:0002353
name: atrioventricular bundle
def: "Subdivision of conducting system of heart which consists of the atrial part and the ventricular part of the atrioventricular bundle and is the direct continuation of the atrioventricular node.[FMA]" [FMA:FMA, Wikipedia:Bundle_of_His]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "atrioventricular bundle muscle tissue" EXACT [FMA:9484]
synonym: "atrioventricular fasciculus" EXACT [FMA:9484]
synonym: "bundle of His" EXACT [FMA:9484]
synonym: "fasciculus atrioventricularis" RELATED LATIN [Wikipedia:Bundle_of_His]
synonym: "His bundle" EXACT []
xref: FMA:9484
xref: GAID:559
xref: galen:BundleOfHis
xref: http://upload.wikimedia.org/wikipedia/commons/5/50/ConductionsystemoftheheartwithouttheHeart.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/ECG_Principle_fast.gif/200px-ECG_Principle_fast.gif
xref: MA:0002576
xref: MESH:A.07.541.409.273
xref: ncithesaurus:Atrioventricular_Bundle
xref: OpenCyc:Mx4rUv1WcGPJEd2AAABQjYGu0g
xref: SCTID:362022007
is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium
relationship: part_of UBERON:0002350 ! conducting system of heart
relationship: part_of UBERON:0004146 {source="GO"} ! His-Purkinje system
[Term]
id: UBERON:0002354
name: purkinje fiber
def: "Conducting tissue of heart which consists of Purkinje myocytes.[FMA]" [FMA:FMA, Wikipedia:Purkinje_fiber]
subset: uberon_slim
synonym: "myofibra conducens cardiacus" EXACT []
xref: FMA:9492
xref: GAID:560
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray498.png/200px-Gray498.png
xref: MA:0000096
xref: MESH:A.07.541.409.683
xref: ncithesaurus:Purkinje_Fiber
is_a: UBERON:0004493 ! cardiac muscle tissue of myocardium
is_a: UBERON:0010131 {source="FMA"} ! conducting tissue of heart
relationship: part_of UBERON:0002350 ! conducting system of heart
[Term]
id: UBERON:0002355
name: pelvis
def: "Subdivision of abdomen, which is demarcated from the abdomen proper by the plane of the superior pelvic aperture, and from the perineum by the inferior surface of the pelvic diaphragm; together with the abdomen proper, it constitutes the abdomen[FMA]." [FMA:9578, Wikipedia:Pelvis]
comment: Note that MA and FMA differ in what they consider to be parts of the pelvis. MA includes ureter, urethra, urinary bladder, reproductive organs
subset: uberon_slim
synonym: "lesser pelvis" EXACT [FMA:9578]
synonym: "pelvic region" EXACT []
synonym: "pelvis region" EXACT []
synonym: "true pelvis" EXACT [FMA:9578]
xref: BTO:0001006
xref: EFO:0002805
xref: EV:0100012
xref: FMA:9578
xref: GAID:87
xref: galen:Pelvis
xref: http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray242.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray242.png/200px-Gray242.png
xref: MA:0000030
xref: MESH:A.01.673
xref: ncithesaurus:Pelvis
xref: OpenCyc:Mx4rvVjiTJwpEbGdrcN5Y29ycA
xref: SCTID:229765004
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0002356
name: perineum
def: "Subdivision of trunk proper, which is demarcated from the pelvis by the inferior surface of the pelvic diaphragm and from the lower limbs by the perineofemoral lines; together with the thorax, abdomen, and pelvis, it constitutes the trunk[FMA]." [FMA:9579, Wikipedia:Perineum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "perineal region" EXACT []
synonym: "regio perinealis" EXACT [FMA:9579, FMA:TA]
xref: EHDAA2:0004015
xref: EV:0100013
xref: FMA:9579
xref: GAID:90
xref: galen:Perineum
xref: http://upload.wikimedia.org/wikipedia/commons/e/ef/Gray406.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ef/Gray406.png/200px-Gray406.png
xref: MA:0002466
xref: MESH:A.01.719
xref: ncithesaurus:Perineum
xref: OpenCyc:Mx4rvcHSh5wpEbGdrcN5Y29ycA
xref: SCTID:243990009
is_a: UBERON:0009569 {source="FMA-modified"} ! subdivision of trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0002357
name: serous pericardium
def: "Serous membrane which has as its parts the epicardium and parietal serous pericardium that surrounds pericardial cavity." [Wikipedia:Serous_pericardium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pericardium serosum" RELATED LATIN [Wikipedia:Serous_pericardium]
synonym: "serous portion of pericardium" EXACT []
xref: FMA:9582
xref: http://upload.wikimedia.org/wikipedia/commons/1/16/Gray968.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: MA:0002739
xref: SCTID:243954002
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0005983 ! heart layer
relationship: part_of UBERON:0002406 ! pericardial sac
[Term]
id: UBERON:0002358
name: peritoneum
def: "A serous membrane that forms the lining of the abdominal cavity or the coelom — it covers most of the intra-abdominal (or coelomic) organs — in higher vertebrates and some invertebrates (annelids, for instance). It is composed of a layer of mesothelium supported by a thin layer of connective tissue. The peritoneum both supports the abdominal organs and serves as a conduit for their blood and lymph vessels and nerves[WP]. The smooth transparent serous membrane that lines the cavity of the abdomen of a mammal and is folded inward over the abdominal and pelvic viscera[BTO]. The endothelial lining of the ABDOMINAL CAVITY. The parietal peritoneum covers the inside of the ABDOMINAL WALL and the visceral peritoneum covers the bowel, the MESENTERY, and certain of the organs. The portion that covers the bowel becomes the serosal layer of the bowel wall[GAID]." [Wikipedia:Peritoneum, ZFIN:curator]
comment: TODO - in ZFA is_a epithelium
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0010814
xref: BTO:0001472
xref: EV:0100087
xref: FMA:9584
xref: GAID:18
xref: galen:Peritoneum
xref: http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1040.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1040.png/200px-Gray1040.png
xref: MESH:A.01.047.025.600
xref: ncithesaurus:Peritoneum
xref: OpenCyc:Mx4rvjJ72ZwpEbGdrcN5Y29ycA
xref: TAO:0005120
xref: VHOG:0001257
xref: XAO:0000139
xref: ZFA:0005120
property_value: UBPROP:0000001 "An epithelium that lines the peritoneal cavity.[TAO]" xsd:string
property_value: UBPROP:0000001 "Serous membrane that forms the lining of the abdominal cavity or the coelom. It covers most of the intra-abdominal organs, supports the abdominal organs, and serves as a conduit for their blood and lymph vessels and nerves. It is composed of a layer of mesothelium.[AAO]" xsd:string
is_a: UBERON:0000042 ! serous membrane
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0003684 ! abdominal cavity
[Term]
id: UBERON:0002359
name: fibrous pericardium
def: "Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia.[FMA]" [FMA:FMA, Wikipedia:Fibrous_pericardium]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
synonym: "fibrous portion of pericardium" EXACT []
synonym: "pericardium fibrosum" RELATED LATIN [Wikipedia:Fibrous_pericardium]
xref: EMAPA:19029
xref: FMA:9586
xref: http://upload.wikimedia.org/wikipedia/commons/1/16/Gray968.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: MA:0002738
xref: SCTID:243953008
is_a: UBERON:0000094 ! membrane organ
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002407 ! pericardium
[Term]
id: UBERON:0002360
name: meninx
def: "Membrane organ that surrounds the brain and the spinal cord." [FMA:9589, http://www.shsu.edu/~bio_mlt/Chap15.html, Wikipedia:Meninx]
comment: Editor note: consider separate term for meninges aka collection of meninges. Note in EHDAA2 pia mater etc are part of the meninges. Also consider a new class for primary/primitive meninx. AO notes: Not consider part of the CNS/neuraxis in FMA. Taxon notes: Whereas cyclostomes and fishes only have a single envelope called the primitive meninx, amphibians have two layers, consisting of an outer dura mater which is extremely dense and protective, and a pia-arachnoid or secondary meninx which is more delicate and vascular. Mammals have three meninges: pia mater (which follows all the convolutions of the brain and is the most interior), the arachnoid layer (which is delicate and sends strands to the pia mater), and the dura mater (the outer, more protective meninx).
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "layer of meninges" EXACT []
synonym: "meningeal layer" EXACT []
xref: BTO:0000144
xref: EFO:0000584
xref: EFO:0000867
xref: EV:0100312
xref: FMA:9589
xref: GAID:687
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Illu_meninges.jpg/200px-Illu_meninges.jpg
xref: MA:0001113
xref: MAT:0000113
xref: MESH:A.08.186.566
xref: ncithesaurus:Meninges
xref: NIF_GrossAnatomy:nlx_anat_090204
xref: OpenCyc:Mx4rwDOl8JwpEbGdrcN5Y29ycA
xref: TAO:0001355
xref: VHOG:0001295
xref: ZFA:0001355
is_a: UBERON:0000094 {source="FMA"} ! membrane organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0002342 {notes="primitive", source="UBERONREF:0000002", gci_relation="part_of", gci_filler="NCBITaxon:7955"} ! neural crest
relationship: part_of UBERON:0010743 ! meningeal cluster
[Term]
id: UBERON:0002361
name: pia mater
def: "delicate innermost layer of the meninges—the membranes surrounding the brain and spinal cord. The thin, mesh-like pia mater closely envelops the entire surface of the brain, running down into the fissures of the cortex. It joins with the ependyma which lines the ventricles to form choroid plexuses that produce cerebrospinal fluid. In the spinal cord, the pia mater attaches to the dura mater by the denticular ligaments through the arachnoid membrane. The pia mater is a neural crest derivative." [Wikipedia:Pia_mater]
comment: Editor note: consider adding adjacency relationship to neuraxis (brain+spinal cord); however note that at this time the meninges may be considered part of the nervous system
subset: uberon_slim
synonym: "pia mater of neuraxis" EXACT []
synonym: "pial membrane" EXACT [NIF_GrossAnatomy:nlx_anat_090209]
xref: BTO:0001635
xref: EHDAA2:0004318
xref: EHDAA:1367
xref: EHDAA:1961
xref: EHDAA:2001
xref: EHDAA:2099
xref: EHDAA:2685
xref: EHDAA:2833
xref: EHDAA:2867
xref: EHDAA:3692
xref: EHDAA:3710
xref: EHDAA:6566
xref: EHDAA:6583
xref: EV:0100315
xref: FMA:9590
xref: GAID:693
xref: http://upload.wikimedia.org/wikipedia/commons/3/31/Gray770-en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray770.png/200px-Gray770.png
xref: MA:0001116
xref: MESH:A.08.186.566.731
xref: ncithesaurus:Pia_Mater
xref: NIF_GrossAnatomy:nlx_anat_090209
xref: OpenCyc:Mx4rvtesBZwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0001464
xref: SCTID:362305004
is_a: UBERON:0000391 ! leptomeninx
[Term]
id: UBERON:0002362
name: arachnoid mater
def: "One of the three meninges, the membranes that cover the brain and spinal cord. It is interposed between the two other meninges, the more superficial dura mater and the deeper pia mater, and is separated from the pia mater by the subarachnoid space." [Wikipedia:Arachnoid_mater]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arachnoid" EXACT []
synonym: "arachnoid mater of neuraxis" EXACT []
synonym: "arachnoid membrane" EXACT [NIF_GrossAnatomy:nlx_anat_090208]
synonym: "arachnoidea mater" RELATED [BTO:0001636]
xref: BTO:0001636
xref: EV:0100314
xref: FMA:9591
xref: GAID:688
xref: http://upload.wikimedia.org/wikipedia/commons/a/a0/Gray767.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a0/Gray767.png/200px-Gray767.png
xref: MA:0001114
xref: MESH:A.08.186.566.166
xref: ncithesaurus:Arachnoid_Membrane
xref: NIF_GrossAnatomy:nlx_anat_090208
xref: OpenCyc:Mx4rve5HlJwpEbGdrcN5Y29ycA
xref: SCTID:362304000
is_a: UBERON:0000391 ! leptomeninx
[Term]
id: UBERON:0002363
name: dura mater
def: "the outermost of the three layers of the meninges surrounding the brain and spinal cord. The other two meningeal layers are the pia mater and the arachnoid mater. The dura surrounds the brain and the spinal cord and is responsible for keeping in the cerebrospinal fluid." [Wikipedia:Dura_mater]
comment: Function notes: capable of inducing chondrogenesis - requires contact with an epithelium - PMID:16496288. AO notes: in ncit this is divided into periosteal layer and meningeal layer
subset: organ_slim
subset: uberon_slim
synonym: "dura" RELATED [BTO:0001637]
synonym: "dura mater of neuraxis" EXACT []
synonym: "pachymeninges" EXACT [NIF_GrossAnatomy:nlx_anat_090206]
xref: BTO:0001637
xref: EMAPA:17776
xref: EV:0100313
xref: FMA:9592
xref: GAID:691
xref: http://upload.wikimedia.org/wikipedia/commons/8/8e/Meninges-en.svg
xref: MA:0001115
xref: MESH:A.08.186.566.395
xref: ncithesaurus:Dura_Mater
xref: NIF_GrossAnatomy:nlx_anat_090206
xref: OpenCyc:Mx4rvvmzqZwpEbGdrcN5Y29ycA
xref: SCTID:362301008
property_value: RO:0002161 NCBITaxon:32443
is_a: UBERON:0002360 ! meninx
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: continuous_with UBERON:0001773 {source="PMID:16496288"} ! sclera
relationship: develops_from UBERON:0007647 ! ectomeninx
relationship: develops_from UBERON:0010115 {evidence="definitional"} ! future dura mater
[Term]
id: UBERON:0002364
name: tympanic membrane
def: "A thin membrane that separates the external ear from the middle ear, consisting of two epithelia (one part of the the external accoustic meatus epithelium, the other part of the tympanic cavity epithelium) with a fibrous layer between them. Its function is to transmit sound from the air to the ossicles inside the middle ear. The malleus bone bridges the gap between the eardrum and the other ossicles. Rupture or perforation of the eardrum can lead to conductive hearing loss. [WP,unvetted]." [PMID:11237469, Wikipedia:Tympanic_membrane]
comment: most AOs consider this part of the middle ear, so we go with this and place it in the middle ear as a border to the external, although it could be considered to overlap the external ear in that it has an EAM layer as part - for this reason we do not consider middle and external ear to be spatially disjoint. Development notes: The tympanic membrane (TM) has three layers, two epithelia provided by the external acoustic meatus (EAM) and the MEC, derived respectively from the first pharyngeal cleft and pouch, and a mesenchymally derived fibrous stratum[PMID:11237469]
subset: organ_slim
subset: uberon_slim
synonym: "ear drum" EXACT []
synonym: "eardrum" EXACT []
synonym: "lateral wall of tympanic cavity" EXACT []
synonym: "membranous wall of tympanic cavity" EXACT []
synonym: "myrinx" EXACT []
synonym: "paries membranaceus cavi tympani" EXACT [FMA:9595, FMA:TA]
synonym: "Rivinus' membrane" EXACT []
synonym: "tympanum" RELATED [Wikipedia:Tympanic_membrane]
xref: EV:0100358
xref: FMA:9595
xref: GAID:870
xref: MA:0000257
xref: MESH:A.09.246.397.873
xref: ncithesaurus:Tympanic_Membrane
xref: SCTID:181180005
xref: VHOG:0001146
xref: XAO:0000212
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0000094 {source="FMA"} ! membrane organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: adjacent_to UBERON:0004114 {source="cjm"} ! tympanic cavity
relationship: develops_from UBERON:0009213 {source="Wikipedia"} ! pharyngeal membrane of 1st arch
relationship: has_part UBERON:0005042 ! inner epithelial layer of tympanic membrane
relationship: has_part UBERON:0010069 ! outer epithelial layer of tympanic membrane
relationship: has_part UBERON:0010070 ! intermediate layer of tympanic membrane
relationship: overlaps UBERON:0001352 ! external acoustic meatus
relationship: overlaps UBERON:0001691 {source="cjm"} ! external ear
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear
[Term]
id: UBERON:0002365
name: exocrine gland
def: "A gland that secretes products (excluding hormones and other chemical messengers) into ducts (duct glands) which lead directly into the external environment[WP]. Typical exocrine glands include sweat glands, salivary glands, mammary glands, stomach, liver, pancreas" [Wikipedia:Exocrine_gland]
comment: Editor's note: Currently this is logically defined by the system it belongs to, but a better system may be base this on presence/absence of ducts. However, the dual nature of the liver should be taken into consideration here. Consider adding subclasses
subset: organ_slim
subset: uberon_slim
synonym: "ducted gland" EXACT [AEO:0000097]
synonym: "glandula exocrina" EXACT LATIN [Wikipedia:Exocrine_gland]
xref: AEO:0000097
xref: BTO:0000765
xref: EHDAA2:0003097
xref: FMA:9596
xref: GAID:34
xref: MA:0002564
xref: MESH:A.10.336
xref: ncithesaurus:Exocrine_Gland
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0002330
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0002330 ! exocrine system
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0002366
name: bulbo-urethral gland
def: "Lobular organ the parenchyma of which consists of glandular acini which communicate the bulbar part of the urethra. Examples: There only two instances, right and left bulbo-urethral glands.[FMA]" [FMA:FMA, Wikipedia:Bulbourethral_gland]
comment: Structure notes: The bulbourethral glands are compound tubulo-alveolar glands.
subset: organ_slim
subset: uberon_slim
synonym: "bulbourethral gland" EXACT []
synonym: "Cowper's gland" EXACT []
synonym: "Cowper's glands" EXACT []
xref: BTO:0001698
xref: EMAPA:19286
xref: FMA:9599
xref: GAID:387
xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png
xref: MA:0000401
xref: MESH:A.05.360.444.123
xref: ncithesaurus:Cowper_s_Gland
xref: SCTID:278918009
property_value: "homologous_to" UBERON:0000460
is_a: UBERON:0010145 {source="ncithesaurus"} ! paraurethral gland
is_a: UBERON:0010147 ! male accessory sex gland
is_a: UBERON:0010186 ! male urethral gland
relationship: part_of UBERON:0001333 ! male urethra
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0002367
name: prostate gland
def: "The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid." [GO:0030850, Wikipedia:Prostate]
comment: TODO - FMA treats the gland as part of the prostate - see also FMA:74119.
subset: major_organ
subset: organ_slim
subset: uberon_slim
synonym: "male prostate" EXACT [PMID:10668204]
synonym: "prostata" RELATED LATIN [Wikipedia:Prostate]
synonym: "prostate" EXACT []
xref: BTO:0001129
xref: EFO:0000858
xref: EMAPA:19287
xref: EV:0100104
xref: FMA:9600
xref: GAID:392
xref: galen:ProstateGland
xref: http://upload.wikimedia.org/wikipedia/commons/a/a1/Prostatelead.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Prostatelead.jpg/200px-Prostatelead.jpg
xref: MA:0000404
xref: MAT:0000078
xref: MESH:A.05.360.444.575
xref: MIAA:0000078
xref: ncithesaurus:Prostate_Gland
xref: OpenCyc:Mx4rv6trqZwpEbGdrcN5Y29ycA
xref: SCTID:181422007
xref: VHOG:0001261
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0010147 ! male accessory sex gland
relationship: develops_from UBERON:0003820 ! prostate bud
[Term]
id: UBERON:0002368
name: endocrine gland
def: "Endocrine glands are glands of the endocrine system that secrete their products, hormones, directly into the blood rather than through a duct. The main endocrine glands include the pituitary gland, pancreas, ovaries, testes, thyroid gland, and adrenal glands. The hypothalamus is a neuroendocrine organ. Other organs which are not so well known for their endocrine activity include the stomach, which produces such hormones as ghrelin[WP]." [Wikipedia:Endocrine_gland]
subset: organ_slim
subset: uberon_slim
synonym: "ductless gland" EXACT []
synonym: "glandula endocrina" EXACT []
synonym: "glandulae endocrinae" RELATED LATIN [Wikipedia:Endocrine_gland]
xref: AEO:0000098
xref: BTO:0001488
xref: EHDAA2:0003098
xref: FMA:9602
xref: GAID:335
xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Illu_endocrine_system.png
xref: MA:0002563
xref: MESH:A.06.407
xref: ncithesaurus:Endocrine_Gland
xref: OpenCyc:Mx4rvbkiRZwpEbGdrcN5Y29ycA
xref: SCTID:40818001
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0000949
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000949 ! endocrine system
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0002369
name: adrenal gland
def: "Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine[BTO]." [BTO:0000047, Wikipedia:Adrenal_gland]
comment: Taxon notes: The origin of the adrenal gland is still controversial. It is thought to share the same origin as the kidney and gonads, derived from coelomic epithelium of the urogenital ridge and/or the underlying mesenchyme (Keegan and Hammer, 2002; Morohashi, 1997). We follow Kardong and state homology at the level of the cortex and medulla rather than gland as a whole
subset: organ_slim
subset: uberon_slim
synonym: "adrenal" RELATED [BTO:0000047]
synonym: "adrenal capsule" RELATED [BTO:0000047]
synonym: "adrenal medulla cell" RELATED []
synonym: "atrabiliary capsule" RELATED [BTO:0000047]
synonym: "epinephros" RELATED [BTO:0000047]
synonym: "glandula suprarenalis" RELATED LATIN [Wikipedia:Adrenal_gland]
synonym: "glandula suprarenalis" RELATED [BTO:0000047]
synonym: "interrenal gland" RELATED HOMOLOGY [GO:0030325]
synonym: "suprarenal capsule" RELATED [BTO:0000047]
synonym: "suprarenal gland" RELATED []
xref: AAO:0010551
xref: BTO:0000047
xref: EFO:0000238
xref: EMAPA:18426
xref: EV:0100135
xref: FMA:9604
xref: GAID:446
xref: galen:AdrenalGland
xref: http://upload.wikimedia.org/wikipedia/commons/9/9d/Illu_endocrine_system_New.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Illu_endocrine_system.jpg/200px-Illu_endocrine_system.jpg
xref: MA:0000116
xref: MAT:0000071
xref: MESH:A.06.407.071
xref: MIAA:0000071
xref: ncithesaurus:Adrenal_Gland
xref: OpenCyc:Mx4rvXYiz5wpEbGdrcN5Y29ycA
xref: SCTID:181127006
xref: VHOG:0001141
xref: XAO:0000164
property_value: UBPROP:0000001 "Anatomical structure which is found on the surface of the kidney and secretes various hormones including epinephrine, norephinephrine, aldosterone, corticosterone, and cortisol.[AAO]" xsd:string
is_a: UBERON:0006858 ! adrenal/interrenal gland
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0000926 {source="Wikipedia"} ! mesoderm
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0002370
name: thymus
def: "Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus]
comment: check - a subtype of gland? not in GO. NCIT has thymus and thymus gland. EHDAA2 has ductless gland
subset: major_organ
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "thymus gland" EXACT []
xref: AAO:0010548
xref: BTO:0001374
xref: EFO:0000860
xref: EHDAA2:0002017
xref: EHDAA:9119
xref: EMAPA:18768
xref: EV:0100138
xref: FMA:9607
xref: GAID:464
xref: http://upload.wikimedia.org/wikipedia/commons/c/cf/Illu_thymus.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Illu_thymus.jpg/200px-Illu_thymus.jpg
xref: MA:0000142
xref: MAT:0000080
xref: MESH:A.06.407.850
xref: MIAA:0000080
xref: ncithesaurus:Thymus_Gland
xref: OpenCyc:Mx4rvpIympwpEbGdrcN5Y29ycA
xref: SCTID:118507000
xref: TAO:0001078
xref: VHOG:0000253
xref: XAO:0000163
xref: ZFA:0001078
property_value: UBPROP:0000001 "Anatomical structure which originates as several paired thickenings on the dorsal side of the pharyngeal pouches and secretes thymosin.[AAO]" xsd:string
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002368 {source="EHDAA2"} ! endocrine gland
is_a: UBERON:0004177 ! hemopoietic organ
is_a: UBERON:0005057 ! immune organ
is_a: UBERON:0005058 ! hemolymphoid system gland
relationship: develops_from UBERON:0005562 {source="ZFA"} ! thymus primordium
relationship: part_of UBERON:0000949 {source="XAO"} ! endocrine system
relationship: part_of UBERON:0002390 {source="FMA"} ! hematopoietic system
relationship: part_of UBERON:0002405 {source="XAO"} ! immune system
relationship: part_of UBERON:0009113 ! thymic region
[Term]
id: UBERON:0002371
name: bone marrow
def: "flexible tissue found in the hollow interior of bones. In adults, marrow in large bones produces new blood cells[WP]." [Wikipedia:Bone_marrow]
comment: TODO - create superclass for bone marrow / head kidney. both are portions of tissue in the hematopoetic system. also consider adding as subclass of zone of bone organ for consistency with FMA. See also: Leydig and epigonal organs
subset: uberon_slim
synonym: "anterior kidney" RELATED []
synonym: "head kidney" BROAD []
synonym: "kidney marrow" RELATED []
synonym: "medulla of bone" RELATED [BTO:0000141]
synonym: "medulla ossea" EXACT []
synonym: "medulla ossium" RELATED LATIN [Wikipedia:Bone_marrow]
synonym: "medulla ossium" RELATED [BTO:0000141]
xref: AAO:0011007
xref: BTO:0000141
xref: BTO:0000829
xref: EFO:0000868
xref: EV:0100046
xref: FMA:9608
xref: GAID:1287
xref: galen:BoneMarrow
xref: http://upload.wikimedia.org/wikipedia/commons/7/74/Gray72-en.svg
xref: MA:0000134
xref: MAT:0000084
xref: MESH:A.15.382.216
xref: MIAA:0000084
xref: ncithesaurus:Bone_Marrow
xref: OpenCyc:Mx4rvVm-FpwpEbGdrcN5Y29ycA
xref: SCTID:421320006
xref: VHOG:0001218
xref: XAO:0000123
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001474 ! bone
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0002372
name: tonsil
def: "Portion of lymphoid tissue on either side of the throat." [Wikipedia:Tonsil]
comment: Most commonly, the term "tonsils" refers to the palatine tonsils that can be seen in the back of the throat.
subset: uberon_slim
synonym: "Mandel" RELATED [BTO:0001387]
xref: BTO:0001387
xref: EFO:0001401
xref: EV:0100052
xref: FMA:9609
xref: GAID:341
xref: MA:0000143
xref: MESH:A.03.867.603.925
xref: ncithesaurus:Tonsil
xref: ncithesaurus:Tonsilar_Tissue
xref: ncithesaurus:Tonsillar_Lymphoid_Tissue
xref: OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA
xref: VHOG:0001139
is_a: UBERON:0001744 ! lymphoid tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
disjoint_from: UBERON:0005351 ! paraflocculus
relationship: part_of UBERON:0000166 ! oral opening
relationship: part_of UBERON:0001735 ! tonsillar ring
[Term]
id: UBERON:0002373
name: palatine tonsil
def: "tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]." [Wikipedia:Palatine_tonsil]
comment: Development notes: tonsillar fossa develops from dorsal portion of pouch 2. Note that pharyngeal and lingual tonsils do not develop from pharyngeal pouches[ISBN10:1607950324]
subset: uberon_slim
synonym: "faucial tonsil" EXACT []
synonym: "tonsil" BROAD []
synonym: "tonsilla palatina" RELATED LATIN [Wikipedia:Palatine_tonsil]
xref: BTO:0004714
xref: EFO:0001977
xref: EV:0100393
xref: FMA:9610
xref: http://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Illu_mouth.jpg/200px-Illu_mouth.jpg
xref: MA:0000775
xref: MAT:0000291
xref: MIAA:0000291
xref: ncithesaurus:Palatine_Tonsil
xref: SCTID:265787001
xref: VHOG:0001140
is_a: UBERON:0002372 ! tonsil
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0002539 {source="Wikipedia"} ! pharyngeal arch
relationship: develops_from UBERON:0010023 {source="ISBN10:1607950324"} ! dorsal part of pharyngeal pouch 2
[Term]
id: UBERON:0002374
name: metacarpal bone
def: "The metacarpus is the intermediate part of the hand skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]." [Wikipedia:Metacarpal_bone]
subset: uberon_slim
synonym: "metacarpal" EXACT []
xref: EFO:0003886
xref: FMA:9612
xref: galen:Metacarpal
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Metacarpals_numbered-en.svg/200px-Metacarpals_numbered-en.svg.png
xref: MA:0000302
xref: ncithesaurus:Metacarpal_Bone
xref: OpenCyc:Mx4rv1Bk45wpEbGdrcN5Y29ycA
xref: SCTID:181977005
is_a: UBERON:0003607 ! forelimb long bone
is_a: UBERON:0003821 ! metacarpal/metatarsal bone
is_a: UBERON:0005897 ! hand bone
relationship: part_of UBERON:0004453
intersection_of: UBERON:0003821 ! metacarpal/metatarsal bone
intersection_of: part_of UBERON:0004453 ! metacarpus region
relationship: part_of UBERON:0004453 ! metacarpus region
relationship: part_of UBERON:0010544 ! metacarpus skeleton
[Term]
id: UBERON:0002375
name: cricoid cartilage
def: "The cricoid cartilage, or simply cricoid (from the Greek krikoeides meaning 'ring-shaped'), is the only complete ring of cartilage around the trachea. [WP,unvetted]." [Wikipedia:Cricoid_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cartilaginis cricoideae" RELATED PLURAL [Wikipedia:Cricoid_cartilage]
synonym: "cartilago cricoidea" RELATED LATIN [Wikipedia:Cricoid_cartilage]
synonym: "cartilago cricoidea" RELATED PLURAL []
synonym: "cartilago cricoidea" RELATED [AAO:0000675]
synonym: "cartilago cricotrachealis" RELATED [AAO:0000675]
synonym: "cricoid" RELATED [Wikipedia:Cricoid_cartilage]
synonym: "cricoidea" RELATED [Wikipedia:Cricoid_cartilage]
synonym: "innominate cartilage" RELATED [VHOG:0001308]
synonym: "krykoid cartilage" RELATED [Wikipedia:Cricoid_cartilage]
xref: AAO:0000675
xref: EHDAA2:0000326
xref: EHDAA:9393
xref: EMAPA:18696
xref: FMA:9615
xref: GAID:110
xref: http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1194.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/Gray1194.png/200px-Gray1194.png
xref: MA:0001762
xref: MESH:A.02.165.507.211
xref: ncithesaurus:Cricoid_Cartilage
xref: SCTID:263484006
xref: VHOG:0001308
property_value: UBPROP:0000001 "Cartilaginous ring that provides support for the arytenoid cartilages. Its ventral part is bent posteriorly to form a V.[AAO]" xsd:string
is_a: UBERON:0001739 {source="MA"} ! laryngeal cartilage
is_a: UBERON:0001994 {source="Wikipedia"} ! hyaline cartilage
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003583 ! larynx connective tissue
relationship: develops_from UBERON:0010214 {source="EHDAA2"} ! cricoid pre-cartilage condensation
[Term]
id: UBERON:0002376
name: muscle of head
def: "Muscle organ which is a part of the head. Examples: masseter, orbicularis oculi.[FMA]" [FMA:9616]
comment: TODO - check ZFA
subset: uberon_slim
subset: vertebrate_core
synonym: "adult head muscle organ" EXACT [OBOL:automatic]
synonym: "cephalic muscle" EXACT [ZFA:0001652]
synonym: "cephalic musculature" EXACT []
synonym: "cranial muscle " RELATED [ZFA:0001652]
synonym: "head muscle" EXACT []
synonym: "head muscle organ" EXACT [OBOL:automatic]
synonym: "head muscles" RELATED []
synonym: "muscle organ of adult head" EXACT [OBOL:automatic]
synonym: "muscle organ of head" EXACT [OBOL:automatic]
synonym: "musculus caput" EXACT []
xref: AAO:0000107
xref: BTO:0000021
xref: EFO:0003524
xref: EHDAA2:0000322
xref: EMAPA:18171
xref: FMA:9616
xref: MA:0000578
xref: TAO:0000328
xref: ZFA:0000328
xref: ZFA:0001652
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010959 ! craniocervical muscle
relationship: part_of UBERON:0000033
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000033 ! head
relationship: develops_from UBERON:0006904 {source="EHDAA2-abduced"} ! head mesenchyme from mesoderm
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0004461 ! musculature of head
[Term]
id: UBERON:0002377
name: muscle of neck
def: "Muscle organ which is a part of the neck. Examples: platysma, sternocleidomastoid, cricothyroid muscle.[FMA]" [FMA:9617]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "muscle organ of neck" EXACT [OBOL:automatic]
synonym: "muscle organ of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) muscle organ" EXACT [OBOL:automatic]
synonym: "neck muscle" EXACT []
synonym: "neck muscle organ" EXACT [OBOL:automatic]
xref: FMA:9617
xref: GAID:149
xref: MA:0000587
xref: MESH:A.02.633.567.650
xref: ncithesaurus:Neck_Muscle
is_a: UBERON:0010959 ! craniocervical muscle
relationship: part_of UBERON:0000974
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0002378
name: muscle of abdomen
def: "Muscle (organ) which is a part of the abdomen. Examples: external oblique, rectus abdominis." [Wikipedia:Abdominal_muscle]
subset: uberon_slim
synonym: "abdomen muscle" EXACT []
synonym: "abdomen muscle organ" EXACT [OBOL:automatic]
synonym: "abdominal muscle" EXACT []
synonym: "abdominal wall muscle" EXACT []
synonym: "muscle organ of abdomen" EXACT [OBOL:automatic]
xref: BTO:0001261
xref: FMA:9620
xref: GAID:89
xref: MA:0000520
xref: MESH:A.02.633.567.050
xref: ncithesaurus:Abdominal_Muscle
xref: OpenCyc:Mx4rvlygNJwpEbGdrcN5Y29ycA
xref: SCTID:361352008
is_a: UBERON:0003833 ! abdominal segment muscle
is_a: UBERON:0005172 ! abdomen organ
relationship: part_of UBERON:0000916
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0003697 ! abdominal wall
[Term]
id: UBERON:0002379
name: perineal muscle
def: "A muscle organ that is part of a perineum [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "muscle of perineum" EXACT []
synonym: "muscle organ of perineal region" EXACT [OBOL:automatic]
synonym: "muscle organ of perineum" EXACT [OBOL:automatic]
synonym: "perineal region muscle organ" EXACT [OBOL:automatic]
synonym: "perineum muscle organ" EXACT [OBOL:automatic]
xref: EMAPA:18923
xref: FMA:9623
xref: MA:0000538
xref: ncithesaurus:Perineal_Muscle
is_a: UBERON:0001325 ! muscle of pelvis
relationship: part_of UBERON:0002356
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002356 ! perineum
relationship: part_of UBERON:0002356 ! perineum
[Term]
id: UBERON:0002380
name: trapezius
def: "In human anatomy, the trapezius is a large superficial muscle that extends longitudinally from the occipital bone to the lower thoracic vertebrae and laterally to the spine of the scapula (shoulder blade). Its functions are to move the scapulae and support the arm. The trapezius has three functional regions: the superior region (descending part), which supports the weight of the arm; the intermediate region (transverse part), which retracts the scapulae; and the inferior region (ascending part), which medially rotates and depresses the scapulae. [WP,unvetted]." [Wikipedia:Trapezius_muscle]
subset: uberon_slim
synonym: "musculus trapezius" RELATED LATIN [Wikipedia:Trapezius_muscle]
synonym: "trapezius muscle" EXACT []
xref: EMAPA:18183
xref: FMA:9626
xref: http://upload.wikimedia.org/wikipedia/commons/6/60/Trapezius.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/60/Trapezius.png/200px-Trapezius.png
xref: MA:0002398
xref: ncithesaurus:Trapezius_Muscle
xref: SCTID:181740005
xref: VHOG:0000834
is_a: UBERON:0001482 ! muscle of shoulder
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0010955 ! trapezius pre-muscle mass
relationship: has_muscle_antagonist UBERON:0001112 {source="dbpedia"} ! latissimus dorsi muscle
relationship: has_muscle_antagonist UBERON:0001125 {source="dbpedia"} ! serratus anterior
relationship: has_muscle_insertion UBERON:0002497 {notes="posterior border of the lateral third of the clavicle acromion process and spine of scapula", source="dbpedia"} ! acromion
relationship: has_muscle_insertion UBERON:0007173 {notes="posterior border of the lateral third of the clavicle acromion process and spine of scapula", source="dbpedia"} ! lateral border of scapula
relationship: has_muscle_origin UBERON:0000351 {source="dbpedia", notes="external occipital protuberance nuchal ligament medial superior nuchal line spinous processes of vertebrae C7-T12"} ! nuchal ligament
relationship: has_muscle_origin UBERON:0001076 {source="dbpedia", notes="external occipital protuberance nuchal ligament medial superior nuchal line spinous processes of vertebrae C7-T12"} ! spinous process of vertebra
[Term]
id: UBERON:0002381
name: pectoralis major
def: "The pectoralis major is a thick, fan-shaped muscle, situated at the upper front of the chest wall. It makes up the bulk of the chest muscles in the male and lies under the breast in the female. Underneath the pectoralis major is the pectoralis minor, a thin, triangular muscle. [WP,unvetted]." [Wikipedia:Pectoralis_major_muscle]
subset: organ_slim
subset: uberon_slim
synonym: "Musculus pectoralis major" RELATED LATIN [Wikipedia:Pectoralis_major_muscle]
synonym: "pectoralis major muscle" EXACT []
synonym: "pectoralis major muscle structure" EXACT [SCTID:60005003]
xref: EHDAA2:0001424
xref: EHDAA:8311
xref: EMAPA:18179
xref: FMA:9627
xref: http://upload.wikimedia.org/wikipedia/commons/6/6c/Pectoralis_major.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Pectoralis_major.png/200px-Pectoralis_major.png
xref: MA:0002354
xref: ncithesaurus:Pectoralis_Major
xref: SCTID:181624003
xref: SCTID:60005003
xref: VHOG:0000895
is_a: UBERON:0001495 {source="FMA"} ! pectoral muscle
relationship: has_muscle_insertion UBERON:0000976 {source="dbpedia", notes="Lateral lip of intertubercular groove of the humerus"} ! humerus
relationship: has_muscle_nerve UBERON:0003726 {source="dbpedia", notes="lateral pectoral nerve and medial pectoral nerveClavicular head: C5 and C6Sternocostal head: C7 C8 and T1"} ! thoracic nerve
relationship: has_muscle_origin UBERON:0000975 {notes="anterior surface of the sternum and the superior six costal cartilages and the aponeurosis of the external oblique muscle", source="dbpedia"} ! sternum
relationship: has_muscle_origin UBERON:0001105 {source="dbpedia", notes="anterior surface of the medial half of the clavicle"} ! clavicle
[Term]
id: UBERON:0002382
name: rectus abdominis muscle
def: "The rectus abdominis muscle is a paired muscle running vertically on each side of the anterior wall of the human abdomen (and in some other animals). There are two parallel muscles, separated by a midline band of connective tissue called the linea alba (white line). It extends from the pubic symphysis/pubic crest inferiorly to the xiphisternum/xiphoid process and lower costal cartilages (5–7) superiorly. It is contained in the Rectus sheath. The rectus is usually crossed by three fibrous bands licked by the tendinous inscriptions. While the 'sixpack' is by far the most common configuration of the muscle bellies of the rectus, there exist rare anatomic variations which result in the appearance of eight ('eightpack'), ten, or—even rarer—asymmetrically arranged segments. All these variations are functionally equivalent. [WP,unvetted]." [Wikipedia:Rectus_abdominis_muscle]
subset: organ_slim
subset: uberon_slim
synonym: "m. rectus abdominis" EXACT [AAO:0010789]
synonym: "musculus rectus abdominis" EXACT [AAO:0010789]
synonym: "rectus abdominis" EXACT [MA:0002364]
synonym: "six pack" RELATED []
xref: AAO:0010789
xref: EHDAA2:0001595
xref: EHDAA:8252
xref: EMAPA:18164
xref: FMA:9628
xref: GAID:142
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/95/Rectus_abdominis.png/200px-Rectus_abdominis.png
xref: MA:0002364
xref: MESH:A.02.633.567.050.800
xref: ncithesaurus:Rectus_Abdominis
xref: VHOG:0000863
xref: XAO:0004128
is_a: UBERON:0002461 ! anterior abdominal wall muscle
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: has_muscle_insertion UBERON:0000975 ! sternum
relationship: has_muscle_origin UBERON:0007832 ! skeleton of pelvic girdle
relationship: part_of UBERON:0006635 {source="VHOG"} ! anterior abdominal wall
relationship: part_of UBERON:0008777 {source="XAO"} ! hypaxial musclulature
[Term]
id: UBERON:0002383
name: supraspinatus muscle
def: "The supraspinatus is a relatively small muscle of the upper limb that takes its name from its origin from the supraspinous fossa superior to the spine of the scapula. It is one of the four rotator cuff muscles and also abducts the arm at the shoulder. The spine of the scapula separates the supraspinatus muscle from the infraspinatus muscle, which originates below the spine. [WP,unvetted]." [Wikipedia:Supraspinatus_muscle]
subset: uberon_slim
synonym: "musculus supraspinatus" EXACT LATIN [Wikipedia:Supraspinatus_muscle]
synonym: "supraspinatus" EXACT [MA:0002389]
xref: EHDAA2:0001967
xref: EHDAA:8319
xref: EMAPA:18182
xref: FMA:9629
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png
xref: MA:0002389
xref: ncithesaurus:Supraspinatus
xref: SCTID:181626001
xref: VHOG:0000848
is_a: UBERON:0001482 ! muscle of shoulder
relationship: has_muscle_insertion UBERON:0011187 {source="dbpedia", notes="middle facet of greater tubercle of the humerus"} ! greater tubercle of humerus
relationship: has_muscle_origin UBERON:0006849 {notes="supraspinous fossa of the scapula", source="dbpedia"} ! scapula
relationship: part_of UBERON:0003683 {source="Wikipedia"} ! rotator cuff
[Term]
id: UBERON:0002384
name: connective tissue
def: "Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibres and ground substance." [VSAO:0000017]
subset: uberon_slim
subset: vertebrate_core
synonym: "Bindegewebe" RELATED [BTO:0000421]
synonym: "portion of connective tissue" EXACT [FMA:9640]
synonym: "textus connectivus" EXACT []
xref: AAO:0000098
xref: BTO:0000421
xref: EFO:0000952
xref: FMA:9640
xref: GAID:100
xref: galen:ConnectiveTissue
xref: MA:0000011
xref: MAT:0000301
xref: MESH:A.10.165
xref: MIAA:0000301
xref: ncithesaurus:Connective_Tissue
xref: OpenCyc:Mx4rv-aBgZwpEbGdrcN5Y29ycA
xref: SCTID:361919005
xref: TAO:0001641
xref: VSAO:0000017
xref: XAO:0001017
xref: ZFA:0001632
property_value: UBPROP:0000001 "One of the four types of tissue in traditional classifications. It is largely a category of exclusion rather than one with a precise definition, but there are certain characteristics shared by all or most tissues in this category, such as involvement in structure and support, derived from mesoderm, and characterized largely by the traits of non-living tissue.[AAO]" xsd:string
property_value: UBPROP:0000001 "Portion of tissue that consists of mesodermally derived cells and intercellular matrix comprised of protein fibers and carbohydrates, which supports, ensheathes and binds together other tissues.[TAO]" xsd:string
property_value: UBPROP:0000001 "Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibers and ground substance.[VSAO]" xsd:string
is_a: UBERON:0000479 ! tissue
[Term]
id: UBERON:0002385
name: muscle tissue
def: "Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourceforge.net/tracker/index.php?func=detail&aid=2801266&group_id=36855&atid=440764, Wikipedia:Muscle_tissue]
comment: Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach.
subset: uberon_slim
synonym: "muscle tissue" EXACT SENSU []
synonym: "portion of muscle tissue" EXACT [FMA:9641]
synonym: "textus muscularis" EXACT []
xref: AAO:0000306
xref: AEO:0000122
xref: EHDAA2:0003122
xref: FMA:9641
xref: galen:MuscleTissue
xref: MA:0002437
xref: MESH:A.02.633
xref: ncithesaurus:Muscle_Tissue
xref: SCTID:91727004
property_value: "spatially_disjoint_from" UBERON:0003714
property_value: UBPROP:0000001 "One of the four types of tissue in traditional classifications. Tissue that contains cells with contractile filaments that move past each other and change the size of the cell. Muscle tissue also is separated into three distinct categories.[AAO]" xsd:string
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
disjoint_from: UBERON:0003714 ! neural tissue
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0000383 ! musculature of body
relationship: part_of UBERON:0001015 ! musculature
[Term]
id: UBERON:0002386
name: forelimb zeugopod
def: "distal region of the upper limb, between the elbow and the wrist." [Wikipedia:Forearm]
comment: Naming conventions for pod terms under discussion within phenoscape group. TODO - add distinct term for skeleton and place AAO class here
subset: uberon_slim
synonym: "antebrachial region" EXACT []
synonym: "antebrachium" EXACT [Wikipedia:Forearm]
synonym: "antebrachium" EXACT [VSAO:0005058]
synonym: "antebrachium" RELATED LATIN [Wikipedia:Forearm]
synonym: "antibrachium" EXACT []
synonym: "arm middle limb segment" EXACT [OBOL:automatic]
synonym: "arm zeugopod" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "fore epipodium" RELATED []
synonym: "forearm" EXACT []
synonym: "forelimb epipodium" EXACT []
synonym: "forelimb zeugopodium" EXACT []
synonym: "intermediate segment of free upper limb" EXACT []
synonym: "lower arm" EXACT []
synonym: "lower segment of arm" EXACT []
synonym: "middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "regio antebrachialis" EXACT [FMA:9663, FMA:TA]
synonym: "zeugopod of arm" EXACT []
synonym: "zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "zeugopod of forelimb" EXACT []
synonym: "zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
xref: BTO:0001447
xref: EFO:0003053
xref: EHDAA2:0000553
xref: EHDAA:4172
xref: EHDAA:6218
xref: EMAPA:17417
xref: FMA:9663
xref: GAID:55
xref: galen:Forearm
xref: http://upload.wikimedia.org/wikipedia/commons/3/3b/Veins.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Forearm_labeled.png/200px-Forearm_labeled.png
xref: MA:0000034
xref: MESH:A.01.378.800.585
xref: ncithesaurus:Forearm
xref: OpenCyc:Mx4rvVjnmpwpEbGdrcN5Y29ycA
xref: SCTID:362741001
xref: VHOG:0000341
xref: VSAO:0005058
is_a: UBERON:0002471 ! zeugopod
is_a: UBERON:0008785 ! upper limb segment
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002471 ! zeugopod
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0001460 {source="MA"} ! arm
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0002387
name: foot
def: "distal portion of the hind limb, including tarsal region, metatarsal region and digits." [Wikipedia:Foot, Wikipedia:Pes_(anatomy)]
comment: Editors note: consider renaming using less human-centric terminology
subset: uberon_slim
synonym: "autopod of hind limb" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "autopod of inferior member" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb autopod" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "hind paw" NARROW SENSU [EMAPA:17428, OBOL:automatic]
synonym: "hind-paw" NARROW SENSU [EMAPA:17428]
synonym: "hindlimb autopod" EXACT [OBOL:automatic]
synonym: "hindlimb autopodium" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "inferior member autopod" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "lower extremity autopod" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "pes" EXACT [UBERON:cjm]
synonym: "pes" RELATED LATIN [Wikipedia:Foot]
synonym: "terminal segment of free lower limb" EXACT []
xref: BTO:0000476
xref: EFO:0003065
xref: EHDAA2:0000546
xref: EMAPA:17459
xref: FMA:9664
xref: GAID:40
xref: galen:Foot
xref: http://upload.wikimedia.org/wikipedia/commons/a/ae/Male_Right_Foot_1.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Male_Right_Foot_1.jpg/200px-Male_Right_Foot_1.jpg
xref: MA:0000044
xref: MESH:A.01.378.610.250
xref: ncithesaurus:Foot
xref: OpenCyc:Mx4rvVi-k5wpEbGdrcN5Y29ycA
xref: SCTID:302545001
xref: VHOG:0000350
is_a: UBERON:0002470 ! autopod region
is_a: UBERON:0008784 ! lower limb segment
relationship: part_of UBERON:0002103
intersection_of: UBERON:0002470 ! autopod region
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: develops_from UBERON:0006871 ! footplate
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0002389
name: hand digit
alt_id: UBERON:0000028
def: "Subdivision of the hand demarcated from the hand proper by the skin crease in line with the distal edge of finger webs. Examples: thumb, right middle finger, left little finger [FMA]. A digit found on the hands of humans and other primates used for manipulation and sensation [Wikipedia]." [Wikipedia:Finger]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "digit of hand" EXACT []
synonym: "digitus manus" EXACT []
synonym: "finger" EXACT [FMA:9666]
synonym: "fore digit" EXACT [AAO:0000857, XAO:0003036]
synonym: "forelimb digit" EXACT []
xref: AAO:0000857
xref: BTO:0004669
xref: EHDAA2:0000404
xref: FMA:9666
xref: GAID:57
xref: galen:Finger
xref: MA:0000041
xref: MESH:A.01.378.800.667.430
xref: ncithesaurus:Finger
xref: NIF_GrossAnatomy:nlx_anat_20090602
xref: OpenCyc:Mx4rvVi_f5wpEbGdrcN5Y29ycA
xref: SCTID:283992002
xref: XAO:0003036
property_value: UBPROP:0000001 "One of the fingers of the manus.[AAO]" xsd:string
is_a: UBERON:0002544 ! digit
is_a: UBERON:0008785 ! upper limb segment
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002544 ! digit
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0002390
name: hematopoietic system
def: "The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]." [BTO:0000570, http://www.thefreedictionary.com/hematopoietic+system, OMD:haematological, Wikipedia:Hematopoietic_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "Blutbildungssystem" RELATED [BTO:0000570]
synonym: "haematological system" EXACT []
synonym: "haematopoietic system" RELATED []
synonym: "haemopoietic system" EXACT []
synonym: "hematological system" RELATED []
synonym: "hematolymphoid system" RELATED []
synonym: "hemopoietic system" RELATED []
synonym: "organa haemopoietica" EXACT []
xref: AAO:0011002
xref: BTO:0000570
xref: EFO:0000798
xref: EV:0100045
xref: FMA:9667
xref: GAID:1008
xref: MA:0002434
xref: MAT:0000022
xref: MESH:A.15.378
xref: MIAA:0000022
xref: ncithesaurus:Hematopoietic_System
xref: SCTID:362587009
xref: TAO:0005023
xref: VHOG:0001624
xref: XAO:0000122
xref: ZFA:0005023
property_value: UBPROP:0000001 "Anatomical system that consists of the blood and blood forming tissues.[AAO]" xsd:string
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004120 ! mesoderm-derived structure
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: develops_from UBERON:0003061 {evidence="definitional"} ! blood island
relationship: part_of UBERON:0002193 ! hemolymphoid system
[Term]
id: UBERON:0002391
name: lymph
def: "Transudate contained in the lumen of lymphatic vessel[FMA]. Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system[WP]." [FMA:9671, Wikipedia:Lymph]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lympha" RELATED LATIN [Wikipedia:Lymph]
xref: BTO:0000855
xref: EFO:0000871
xref: ENVO:02000041
xref: EV:0100049
xref: FMA:9671
xref: GAID:1186
xref: galen:Lymph
xref: http://upload.wikimedia.org/wikipedia/commons/1/19/Illu_lymph_capillary.png
xref: MA:0002520
xref: MAT:0000055
xref: MESH:A.12.207.630
xref: MIAA:0000055
xref: ncithesaurus:Lymph
xref: OpenCyc:Mx4rvpDOU5wpEbGdrcN5Y29ycA
xref: VHOG:0001590
is_a: UBERON:0000179 ! haemolymphatic fluid
relationship: develops_from UBERON:0000913 ! interstitial fluid
[Term]
id: UBERON:0002392
name: nasolacrimal duct
def: "The nasolacrimal duct (sometimes called tear duct) carries tears from the lacrimal sac into the nasal cavity. Excess tears flow through nasolacrimal duct which opens in the nose. This is the reason the nose starts to run when a person is crying or has watery eyes from an allergy, and why one can sometimes taste eye drops. Like the lacrimal sac, the duct is lined by stratified columnar epithelium containing mucus-secreting goblet cells, and is surrounded by connective tissue. Obstruction of the nasolacrimal duct leads to the excess overflow of tears called epiphora. A congenital obstruction can cause cystic expansion of the duct and is called a dacrocystocele or Timo cyst. Persons with dry eye conditions can be fitted with punctal plugs that seal the ducts to limit the amount of fluid drainage and retain moisture. The canal containing the nasolacrimal duct is called the nasolacrimal canal. [WP,unvetted]." [Wikipedia:Nasolacrimal_duct]
comment: todo - resolve canaliculus vs tear duct vs lacrimal vs nasolacrimal
subset: uberon_slim
synonym: "d. nasolacrimalis" RELATED LATIN [Wikipedia:Nasolacrimal_duct]
synonym: "nasolacrimal duct - posterior naris" BROAD [VHOG:0000664]
xref: AAO:0000643
xref: EHDAA2:0001237
xref: EHDAA:7849
xref: EHDAA:9094
xref: EMAPA:17853
xref: FMA:9703
xref: GAID:902
xref: http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray896.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray896.png/200px-Gray896.png
xref: MA:0001299
xref: MESH:A.09.371.463.640
xref: ncithesaurus:Nasolacrimal_Duct
xref: OpenCyc:Mx4rv6PJy5wpEbGdrcN5Y29ycA
xref: SCTID:280643009
xref: VHOG:0000664
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal duct
[Term]
id: UBERON:0002393
name: pharyngotympanic tube
def: "Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes.[FMA]" [FMA:FMA, Wikipedia:Eustachian_tube]
comment: Editor notes: we follow FMA in making this an organ, but include a separate class for the part that is epithelium, which is equivalent to the EHDAA2 structure. From this we infer the developmental relationship
subset: organ_slim
subset: uberon_slim
synonym: "auditory tube" EXACT [MA:0000255]
synonym: "eustachian tube" RELATED []
synonym: "internal auditory tube" EXACT []
synonym: "tuba auditiva" EXACT [FMA:9705, FMA:TA]
synonym: "tuba auditiva; tuba auditoria; tuba auditivea" RELATED LATIN [Wikipedia:Eustachian_tube]
synonym: "tuba auditoria" EXACT [FMA:9705, FMA:TA]
xref: AAO:0000146
xref: AAO:0011016
xref: EMAPA:17601
xref: EV:0100359
xref: FMA:9705
xref: GAID:869
xref: http://upload.wikimedia.org/wikipedia/commons/4/40/Ear-anatomy-text-small-en.svg
xref: MA:0000255
xref: ncithesaurus:Eustachian_Tube
xref: VHOG:0001145
xref: XAO:0000213
property_value: UBPROP:0000001 "Furrow on the ventral surface of the otic capsule, and occasionally also the parasphenoid, that houses the Eustachian tube.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO]" xsd:string
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0010020 {source="UBERON:0010062"} ! tubotympanic recess epithelium
relationship: has_part UBERON:0010062 ! pharyngotympanic tube epithelium
relationship: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0002394
name: bile duct
def: "Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
comment: The path is as follows: Bile canaliculi → Canals of Hering → interlobular bile ducts → intrahepatic bile ducts → left and right hepatic ducts merge to form → common hepatic duct exits liver and joins → cystic duct (from gall bladder) forming → common bile duct → joins with pancreatic duct → forming ampulla of Vater → enters duodenum [WP]
subset: uberon_slim
synonym: "gall duct" RELATED [BTO:0000122]
synonym: "hepatic duct" RELATED []
xref: AAO:0011019
xref: BTO:0000122
xref: EHDAA2:0000741
xref: EV:0100091
xref: FMA:9706
xref: GAID:280
xref: http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: MA:0000354
xref: MESH:A.03.159.183
xref: ncithesaurus:Bile_Duct
xref: OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA
xref: SCTID:276157007
xref: VHOG:0000212
xref: XAO:0000134
is_a: UBERON:0003928 ! digestive system duct
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: channel_for UBERON:0001970
intersection_of: UBERON:0000058 ! duct
intersection_of: channel_for UBERON:0001970 ! bile
relationship: channel_for UBERON:0001970 ! bile
relationship: develops_from UBERON:0008835 {source="XAO"} ! hepatic diverticulum
relationship: part_of UBERON:0001173 {source="MA"} ! biliary tree
relationship: part_of UBERON:0002294 ! biliary system
[Term]
id: UBERON:0002395
name: talus
def: "proximal tarsal bone resulting from fusion of intermedium and fibulare." [Wikipedia:Talus_bone]
comment: Taxon notes: The talus is apparently derived from the fusion of three separate bones in the feet of primitive amphibians; the tibiale, articulating with tibia, the intermedium, between the bases of the tibia and fibula, and the fourth centrale, lying in the mid-part of the tarsus. These bones are still partially separate in modern amphibians, which therefore do not have a true talus. The talus forms a considerably more flexible joint in mammals than it does in reptiles. This reaches its greatest extent in artiodactyls, where the distal surface of the bone has a smooth keel to allow greater freedom of movement of the foot, and thus increase running speed[WP]
subset: uberon_slim
synonym: "astragaloid bone" RELATED [BTO:0002354]
synonym: "astragalus" RELATED [ISBN10:0073040584, MA:000135, Wikipedia:Talus_bone]
synonym: "astragalus bone" RELATED [ISBN10:0073040584, Wikipedia:Talus_bone]
synonym: "os tarsi tibiale" RELATED [BTO:0002354]
synonym: "os trigonum" RELATED [Wikipedia:Talus_bone]
synonym: "Os trigonum, Astralagus" RELATED LATIN [Wikipedia:Talus_bone]
xref: BTO:0002354
xref: EMAPA:18503
xref: EMAPA:19135
xref: FMA:9708
xref: GAID:196
xref: galen:Talus
xref: http://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Subtalar_Joint.PNG/250px-Subtalar_Joint.PNG
xref: MA:0001351
xref: MESH:A.02.835.232.300.710.780
xref: ncithesaurus:Talus
xref: SCTID:182098005
property_value: "has_fused_element" UBERON:0011678
is_a: UBERON:0011679 ! proximal tarsal bone
relationship: connected_to UBERON:0000979 ! tibia
[Term]
id: UBERON:0002396
name: vomer
def: "The vomer is one of the unpaired facial bones of the skull. It is located in the midsagittal line, and articulates with the sphenoid, the ethmoid, the left and right palatine bones, and the left and right maxillary bones. [WP,unvetted]." [Wikipedia:Vomer]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "vomer bone" EXACT []
xref: AAO:0000633
xref: FMA:9710
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg
xref: MA:0001496
xref: ncithesaurus:Vomer
xref: OpenCyc:Mx4rv6jKWZwpEbGdrcN5Y29ycA
xref: SCTID:272678009
xref: TAO:0000308
xref: ZFA:0000308
property_value: UBPROP:0000001 "Dermal bone that underlies the mesethmoid and inserts in a fossa on the anteroventral surface of the parasphenoid.[TAO]" xsd:string
property_value: UBPROP:0000001 "Paired, palatal bones of intramembranous origin that lie ventral to the olfactory region and help to floor the nasal capsules.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps autopalatine-vomer joint (TAO:0001784)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps mesethmoid-vomer joint (TAO:0001680)[TAO]" xsd:string
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: connected_to UBERON:0001677 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! sphenoid bone
relationship: connected_to UBERON:0001679 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! ethmoid bone
relationship: part_of UBERON:0003113 {source="Kardong", notes="palatal series"} ! dermatocranium
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0002397
name: maxilla
def: "The bone which normally forms the lateral upper jaw in osteichthyans, including tetrapods." [http://palaeos.com/vertebrates/glossary/glossaryM.html, Wikipedia:Maxilla]
comment: Fusion of maxilla + premaxilla
subset: uberon_slim
subset: vertebrate_core
synonym: "maxillae" RELATED PLURAL []
synonym: "upper jaw bone" BROAD []
xref: AAO:0000285
xref: EHDAA2:0001068
xref: EHDAA:8043
xref: EMAPA:17639
xref: EMAPA:17928
xref: FMA:9711
xref: GAID:220
xref: galen:Maxilla
xref: http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray189.png/200px-Gray189.png
xref: MA:0001491
xref: MESH:A.02.835.232.781.324.502.645
xref: ncithesaurus:Maxilla
xref: SCTID:181813003
xref: TAO:0000270
xref: VHOG:0001021
xref: VSAO:0000207
xref: ZFA:0000270
property_value: UBPROP:0000001 "Dermal bone that forms part of the upper jaw, located antero-ventral to the premaxilla. The maxilla is a paired bone.[TAO]" xsd:string
property_value: UBPROP:0000001 "Paired, intramembranous bone located on the lateral sides of the skull, posterior to the premaxillae.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps autopalatine-maxillary joint (TAO:0001942)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps premaxillary-maxillary joint (TAO:0002260)[TAO]" xsd:string
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone
is_a: UBERON:0008907 {source="VSAO"} ! dermal bone
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0011597 ! bone of upper jaw
relationship: adjacent_to UBERON:0002244 ! premaxilla
relationship: develops_from UBERON:0010334 {source="EHDAA2"} ! maxillary process mesenchyme from neural crest
relationship: part_of UBERON:0003113 {source="Kardong", notes="facial series"} ! dermatocranium
relationship: part_of UBERON:0003277 {source="VHOG"} ! skeleton of upper jaw
[Term]
id: UBERON:0002398
name: hand
def: "distal segment of the fore limb, including carpal region, metacarpal region and digits." [Wikipedia:Hand, Wikipedia:Manus_(anatomy)]
comment: Usage notes: like all limb segments, this class encompasses both the unformed hand region of the embryo to the fully formed structure complete with skeleton
subset: uberon_slim
synonym: "arm autopod" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "autopod of arm" EXACT [OBOL:automatic]
synonym: "autopod of brachial region" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region autopod" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "fore paw" NARROW SENSU [EMAPA:17428, OBOL:automatic]
synonym: "fore-paw" NARROW SENSU [EMAPA:17428]
synonym: "forelimb autopod" EXACT [OBOL:automatic]
synonym: "forelimb autopodium" EXACT [OBOL:automatic]
synonym: "hand region" EXACT [EHDAA2:0000728]
synonym: "manus" RELATED LATIN [Wikipedia:Hand]
synonym: "manus" RELATED [UBERON:cjm]
synonym: "proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb" EXACT []
xref: AAO:0010803
xref: BTO:0004668
xref: EHDAA2:0000728
xref: EMAPA:17428
xref: FMA:9712
xref: GAID:56
xref: galen:Hand
xref: http://upload.wikimedia.org/wikipedia/commons/7/76/LeftHand0.jpg
xref: MA:0000037
xref: MESH:A.01.378.800.667
xref: ncithesaurus:Hand
xref: NIF_GrossAnatomy:nlx_anat_20090603
xref: OpenCyc:Mx4rvViGVZwpEbGdrcN5Y29ycA
xref: SCTID:302539009
xref: VHOG:0000344
is_a: UBERON:0002470 ! autopod region
is_a: UBERON:0008785 ! upper limb segment
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002470 ! autopod region
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: develops_from UBERON:0006875 ! handplate
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0002399
name: lesser omentum
def: "The lesser omentum (small omentum; gastrohepatic omentum) is the double layer of peritoneum that extends from the liver to the lesser curvature of the stomach and the start of the duodenum. [WP,unvetted]." [Wikipedia:Lesser_omentum]
comment: editor note: exact part of and develops from relationships need to be established
subset: uberon_slim
synonym: "omentum minus" RELATED LATIN [Wikipedia:Lesser_omentum]
xref: EHDAA2:0000991
xref: EHDAA:4858
xref: EMAPA:17890
xref: EMAPA:18909
xref: EV:0100086
xref: FMA:9715
xref: http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray984.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray984.png/200px-Gray984.png
xref: MA:0001623
xref: ncithesaurus:Lesser_Omentum
xref: SCTID:362712005
xref: VHOG:0000357
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003688 ! omentum
is_a: UBERON:0009034 ! stomach region
relationship: develops_from UBERON:0005626 {source="Wikipedia"} ! ventral mesogastrium
relationship: part_of UBERON:0001178 {source="FMA"} ! visceral peritoneum
relationship: part_of UBERON:0005626 {source="MA"} ! ventral mesogastrium
[Term]
id: UBERON:0002400
name: parietal pleura
def: "Parietal serous membrane which is continuous with the visceral pleura and is attached to the dome of the diaphragm.[FMA]" [FMA:FMA, Wikipedia:Parietal_pleura]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pleura parietalis" RELATED LATIN [Wikipedia:Parietal_pleura]
xref: FMA:9733
xref: http://upload.wikimedia.org/wikipedia/commons/1/16/Gray968.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: MA:0002488
xref: ncithesaurus:Parietal_Pleura
xref: OpenCyc:Mx4rvv2Uq5wpEbGdrcN5Y29ycA
xref: SCTID:361998003
xref: VHOG:0001495
is_a: UBERON:0000977 ! pleura
relationship: part_of UBERON:0000977 ! pleura
[Term]
id: UBERON:0002401
name: visceral pleura
def: "Visceral serous membrane which is continuous with the parietal pleura and is attached to the parenchyma of lobe of lung.[FMA]" [FMA:FMA, Wikipedia:Visceral_pleura]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pleura pulmonalis" EXACT LATIN [FMA:9734, FMA:TA]
synonym: "pleura visceralis" EXACT LATIN [Wikipedia:Visceral_pleura]
synonym: "pleura visceralis (pulmonalis)" EXACT []
synonym: "pulmonary pleura" EXACT []
xref: FMA:9734
xref: http://upload.wikimedia.org/wikipedia/commons/1/16/Gray968.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: MA:0002489
xref: ncithesaurus:Visceral_Pleura
xref: OpenCyc:Mx4rwNFqppwpEbGdrcN5Y29ycA
xref: SCTID:361997008
xref: VHOG:0001496
is_a: UBERON:0000977 ! pleura
relationship: part_of UBERON:0000977 ! pleura
[Term]
id: UBERON:0002402
name: pleural cavity
def: "Cavity of serous sac surropunded by the pleura.[FMA]" [FMA:FMA, Wikipedia:Pleural_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cavitas pleurallis" RELATED LATIN [Wikipedia:Pleural_cavity]
xref: BTO:0004422
xref: EHDAA2:0001475
xref: EMAPA:18462
xref: FMA:9740
xref: GAID:95
xref: http://upload.wikimedia.org/wikipedia/commons/a/ab/Gray965.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Gray965.png/200px-Gray965.png
xref: MA:0000055
xref: MESH:A.01.911.800.650
xref: ncithesaurus:Pleural_Cavity
xref: OpenCyc:Mx4rwCKAppwpEbGdrcN5Y29ycA
xref: SCTID:361999006
xref: VHOG:0000581
is_a: UBERON:0002323 ! body cavity
relationship: part_of UBERON:0009778
intersection_of: UBERON:0002323 ! body cavity
intersection_of: part_of UBERON:0009778 ! pleural sac
relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom
relationship: part_of UBERON:0009778 {source="FMA"} ! pleural sac
relationship: part_of UBERON:0009778 ! pleural sac
[Term]
id: UBERON:0002403
name: internal intercostal muscle
def: "Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]." [Wikipedia:Intercostal_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intercostal muscle internal layer" RELATED []
synonym: "intercostales internus" EXACT []
xref: EHDAA2:0000875
xref: FMA:9757
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png
xref: MA:0002326
xref: ncithesaurus:Internal_Intercostal_Muscle
xref: OpenCyc:Mx4rvlj6HZwpEbGdrcN5Y29ycA
xref: SCTID:244890001
xref: VHOG:0000905
is_a: UBERON:0001111 ! intercostal muscle
relationship: develops_from UBERON:0010981 {source="EHDAA2"} ! internal intercostal pre-muscle mass
[Term]
id: UBERON:0002404
name: transversus thoracis
def: "The tranversus thoracis lies internal to the thoracic cage, anteriorly. It is a thin plane of muscular and tendinous fibers, situated upon the inner surface of the front wall of the chest. It is in the same layer as the subcostal muscles. It arises on either side from the lower third of the posterior surface of the body of the sternum, from the posterior surface of the xiphoid process, and from the sternal ends of the costal cartilages of the lower three or four true ribs. Its fibers diverge upward and lateralward, to be inserted by slips into the lower borders and inner surfaces of the costal cartilages of the second, third, fourth, fifth, and sixth ribs. The lowest fibers of this muscle are horizontal in their direction, and are continuous with those of the Transversus abdominis; the intermediate fibers are oblique, while the highest are almost vertical. This muscle varies in its attachments, not only in different subjects, but on opposite sides of the same subject. [WP,unvetted]." [Wikipedia:Transversus_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: organ_slim
subset: uberon_slim
xref: EMAPA:19267
xref: FMA:9760
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ef/Transversus_thoracis.png/200px-Transversus_thoracis.png
xref: MA:0002397
xref: ncithesaurus:Transversus_Thoracis
xref: SCTID:244933000
is_a: UBERON:0002426 ! chest muscle
[Term]
id: UBERON:0002405
name: immune system
def: "Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." [NLM:immune+system, Wikipedia:Immune_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0011003
xref: BILA:0000104
xref: FMA:9825
xref: GAID:328
xref: MA:0002711
xref: MESH:A.15.382
xref: ncithesaurus:Immune_System
xref: OpenCyc:Mx4rvWNkm5wpEbGdrcN5Y29ycA
xref: SCTID:362590003
xref: TAO:0001159
xref: VHOG:0001247
xref: XAO:0003152
xref: ZFA:0001159
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0002406
name: pericardial sac
def: "Serous sac, which has as parts the serous pericardium and the pericardial cavity [FMA]." [FMA:9868]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "pericardium" RELATED []
xref: FMA:9868
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png
xref: RETIRED_EHDAA2:0001443
xref: SCTID:361326002
xref: TAO:0000054
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005906 ! serous sac
relationship: part_of UBERON:0001009 ! circulatory system
relationship: part_of UBERON:0002407 ! pericardium
relationship: surrounded_by UBERON:0002359 {source="FMA"} ! fibrous pericardium
[Term]
id: UBERON:0002407
name: pericardium
def: "The outer membrane/wall of the developing heart, surrounding the myocardium. Peritoneum that surrounds the heart.[AAO]" [AAO:0010817, Wikipedia:Pericardium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
xref: AAO:0010817
xref: BTO:0000717
xref: EFO:0000820
xref: EHDAA:5376
xref: EMAPA:17174
xref: EV:0100023
xref: FMA:9869
xref: GAID:569
xref: galen:Pericardium
xref: http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png
xref: MA:0000099
xref: MAT:0000454
xref: MESH:A.07.541.795
xref: ncithesaurus:Pericardium
xref: OpenCyc:Mx4rvoCLgJwpEbGdrcN5Y29ycA
xref: RETIRED_EHDAA2:0001443
xref: SCTID:181295003
xref: TAO:0000054
xref: VHOG:0001280
xref: XAO:0004182
xref: ZFA:0000054
property_value: UBPROP:0000001 "Peritoneum that surrounds the heart.[AAO]" xsd:string
is_a: UBERON:0000483 {source="GO"} ! epithelium
is_a: UBERON:0004457 ! cavity lining
is_a: UBERON:0005983 ! heart layer
relationship: adjacent_to UBERON:0002349 ! myocardium
relationship: part_of UBERON:0000948 {source="XAO"} ! heart
[Term]
id: UBERON:0002408
name: parietal serous pericardium
def: "Parietal serous membrane which is continuous with the visceral serous pericardium and is attached to the central tendon of diaphragm.[FMA]" [FMA:FMA, Wikipedia:Parietal_pericardium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lamina parietalis (pericardii serosum)" EXACT []
synonym: "lamina parietalis pericardii" EXACT [FMA:9870, FMA:TA]
synonym: "parietal layer of serous pericardium" EXACT []
synonym: "parietal pericardium" EXACT []
xref: EHDAA:3422
xref: EHDAA:5378
xref: EMAPA:17175
xref: EMAPA:19031
xref: FMA:9870
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png
xref: MA:0000483
xref: ncithesaurus:Parietal_Pericardium
xref: SCTID:243956000
xref: VHOG:0000537
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0005983 ! heart layer
relationship: part_of UBERON:0002357 ! serous pericardium
[Term]
id: UBERON:0002409
name: pericardial fluid
def: "Transudate contained in the pericardial cavity.[FMA]" [FMA:9887, Wikipedia:Pericardial_fluid]
subset: uberon_slim
xref: BTO:0001016
xref: FMA:9887
xref: MA:0002530
is_a: UBERON:0000463 ! portion of organism substance
relationship: secreted_by UBERON:0002425
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: secreted_by UBERON:0002425 ! visceral serous pericardium
relationship: secreted_by UBERON:0002425 ! visceral serous pericardium
[Term]
id: UBERON:0002410
name: autonomic nervous system
def: "The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands[GO]." [Wikipedia:Autonomic_nervous_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "ANS" RELATED []
synonym: "divisio autonomica systematis nervosi peripherici" RELATED LATIN [Wikipedia:Autonomic_nervous_system]
synonym: "visceral nervous system" EXACT []
xref: AAO:0000033
xref: BTO:0002507
xref: EHDA:10095
xref: EHDAA:3767
xref: EMAPA:16984
xref: FMA:9905
xref: GAID:706
xref: http://upload.wikimedia.org/wikipedia/commons/f/f7/Gray839.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png
xref: MA:0000219
xref: MESH:A.08.800.050
xref: ncithesaurus:Autonomic_Nervous_System
xref: NIF_GrossAnatomy:birnlex_1123
xref: SCTID:362481007
xref: TAO:0001574
xref: VHOG:0000396
xref: ZFA:0001574
property_value: UBPROP:0000001 "Part of the peripheral nervous system which regulates involuntary functions of the body and consists of the sympathetic and parasympathetic system.[AAO]" xsd:string
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0002411
name: clitoris
def: "The clitoris is a sexual organ that is present only in female mammals. In humans, the visible button-like portion is located near the anterior junction of the labia minora, above the opening of the urethra and vagina. Unlike the penis, which is homologous to the clitoris, the clitoris does not contain the distal portion of the urethra. The only known exception to this is in the Spotted Hyena. In this species, the urogenital system is unique in that the female urinates, mates and gives birth via an enlarged, erectile clitoris, known as a pseudo-penis. In humans, the clitoris is the most sensitive erogenous zone of a woman, the stimulation of which may produce sexual excitement and clitoral erection; its continuing stimulation may produce sexual pleasure in the woman and orgasm. [WP,unvetted]." [Wikipedia:Clitoris]
subset: organ_slim
subset: uberon_slim
xref: BTO:0002020
xref: EHDAA2:0000255
xref: EHDAA:9360
xref: EMAPA:30819
xref: FMA:9909
xref: GAID:385
xref: galen:Clitoris
xref: http://upload.wikimedia.org/wikipedia/commons/c/cf/Clitoris_anatomy_labeled-en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Clitoris_anatomy_labeled-en.svg/200px-Clitoris_anatomy_labeled-en.svg.png
xref: MA:0000382
xref: MESH:A.05.360.319.887.436
xref: ncithesaurus:Clitoris
xref: OpenCyc:Mx4rvVjr6ZwpEbGdrcN5Y29ycA
xref: SCTID:181442003
xref: VHOG:0000700
is_a: UBERON:0000062 {source="Wikipedia"} ! organ
is_a: UBERON:0005156 ! reproductive structure
relationship: develops_from UBERON:0005876 {source="EHDAA2", source="Wikipedia"} ! undifferentiated genital tubercle
relationship: part_of UBERON:0000997 {source="MA"} ! mammalian vulva
[Term]
id: UBERON:0002412
name: vertebra
def: "Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum[FMA]. All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)[ZFA]." [FMA:9914, Wikipedia:Vertebra, ZFIN:curator]
comment: Editor notes: Consider changing name to make distinction from inferred superclass 'vertebral element' clear
subset: uberon_slim
subset: vertebrate_core
synonym: "vertebra bone" EXACT []
xref: AAO:0000691
xref: EFO:0001371
xref: FMA:9914
xref: galen:Vertebra
xref: MA:0000309
xref: ncithesaurus:Vertebra
xref: OpenCyc:Mx4rvt2Dh5wpEbGdrcN5Y29ycA
xref: SCTID:181817002
xref: TAO:0001189
xref: VHOG:0001143
xref: XAO:0004019
xref: ZFA:0001189
property_value: UBPROP:0000001 "Endochondral bone that forms around the notochord and is part of the vertebral column.[TAO]" xsd:string
property_value: UBPROP:0000001 "Main component of the vertebral column. It consists of two essential parts, a dorsal neural arch and a ventral centrum.[AAO]" xsd:string
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
is_a: UBERON:0010913 ! vertebral element
relationship: develops_from UBERON:0011094 ! vertebra cartilaginous condensation
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0002413
name: cervical vertebra
def: "A vertebra immediately inferior to the skull[WP]." [Wikipedia:Cervical_vertebrae]
comment: In some species, some parts of the skull may be composed of vertebra-like elements, e.g. the occipital bone in humans is composed of four vertebra-like segments. In many vertebrate species, cervical vertebrae are variable in number; however, almost all mammals have seven (including those with very short necks relative to body size, such as elephants or whales, and those with very long necks, such as giraffes). The few exceptions include the manatee and the sloths, of which the two-toed sloth has six cervical vertebrae and the three-toed sloth has up to nine cervical vertebrae. In many species, though not in mammals, the cervical vertebrae bear ribs. In many other groups, such as lizards and saurischian dinosaurs, the cervical ribs are large; in birds they are small and completely fused to the vertebrae. The transverse processes of mammals are homologous to the cervical ribs of other amniotes. Thoracic vertebrae in all species are defined as those vertebrae which also carry a pair of ribs, and lie caudal to the cervical vertebrae. n humans, cervical vertebrae are the smallest of the true vertebrae, and can be readily distinguished from those of the thoracic or lumbar regions by the presence of a foramen (hole) in each transverse process, through which passes the vertebral artery.
subset: uberon_slim
synonym: "cervical vertebrae" EXACT PLURAL []
synonym: "vertebrae cervicales" RELATED LATIN [Wikipedia:Cervical_vertebrae]
xref: EMAPA:17674
xref: FMA:9915
xref: GAID:235
xref: galen:CervicalVertebra
xref: http://upload.wikimedia.org/wikipedia/commons/f/f8/Illu_vertebral_column.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Illu_vertebral_column.jpg/200px-Illu_vertebral_column.jpg
xref: MA:0000311
xref: MESH:A.02.835.232.834.151
xref: ncithesaurus:Cervical_Vertebra
xref: SCTID:181820005
xref: XAO:0003076
is_a: UBERON:0003458 ! neck bone
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0004451 ! trunk or cervical vertebra
relationship: part_of UBERON:0006072
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0006072 ! cervical region of vertebral column
relationship: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0006072 ! cervical region of vertebral column
[Term]
id: UBERON:0002414
name: lumbar vertebra
def: "Large vertebra of the movable part of the vertebral column, characterized by the absence of the foramen transversarium within the transverse process, and by the absence of facets on the sides of the body." [Wikipedia:Lumbar_vertebrae]
comment: Whereas all rats had six lumbar vertebrae, variable patterns in mice included mostly five vertebrae in DBA/2J, mostly six vertebrae in C57BL/6J, and a mix in B6129PF2/J - http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700063/
subset: uberon_slim
xref: EMAPA:18007
xref: FMA:9921
xref: GAID:240
xref: galen:LumbarVertebra
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c8/Gray93.png/200px-Gray93.png
xref: MA:0000312
xref: MESH:A.02.835.232.834.519
xref: ncithesaurus:Lumbar_Vertebra
xref: OpenCyc:Mx4rvaOek5wpEbGdrcN5Y29ycA
xref: SCTID:181822002
is_a: UBERON:0002412 ! vertebra
is_a: UBERON:0003828 ! abdominal segment bone
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004247 ! back bone
relationship: part_of UBERON:0006074
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0006074 ! lumbar region of vertebral column
relationship: part_of UBERON:0006074 ! lumbar region of vertebral column
[Term]
id: UBERON:0002415
name: tail
def: "section at the rear end of an animal's body; in general, the term refers to a distinct, flexible appendage to the torso[WP]." [ISBN:0471209627, OMD:tail, Wikipedia:Tail, ZFIN:curator]
comment: Editor notes: Note we also have a subclass post-anal tail, for the chordate specific structure. currently defined very generally, inclusive of caudal fin
subset: grouping_class
subset: uberon_slim
synonym: "caudal subdivision" EXACT [UBERON:cjm]
xref: AEO:0000109
xref: BILA:0000117
xref: BTO:0001348
xref: EFO:0000963
xref: EHDAA:9198
xref: GAID:1245
xref: MAT:0000094
xref: MESH:A.13.895
xref: MIAA:0000094
xref: OpenCyc:Mx4rvVjiC5wpEbGdrcN5Y29ycA
xref: WBbt:0005741
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000154 ! posterior region of body
[Term]
id: UBERON:0002416
name: integumental system
def: "organ system that protects the body from damage, comprising the skin and its adnexa (including hair, scales, and nails). The integumentary system has a variety of functions; it may serve to waterproof, cushion and protect the deeper tissues, excrete wastes, regulate temperature and is the location of receptors for pain, sensation, pressure and temperature. In humans the integumentary system additionally provides vitamin D synthesis[WP]." [Wikipedia:Integumentary_system]
comment: in FMA, integumentary system = integument + certain glands. Note that here we use integumental system in a general sense, covering a variety of metazoans
subset: grouping_class
synonym: "integumentary system" EXACT [FMA:72979]
synonym: "integumentum commune" RELATED LATIN [Wikipedia:Integumentary_system]
xref: EFO:0000807
xref: EHDAA2:0000836
xref: EHDAA:6520
xref: EMAPA:17524
xref: EV:0100151
xref: FBbt:00004969
xref: FMA:72979
xref: HAO:0000421
xref: MA:0000014
xref: MAT:0000033
xref: MESH:A.17
xref: ncithesaurus:Integumentary_System
xref: SCTID:361692004
xref: TADS:0000108
xref: VHOG:0000403
xref: XAO:0000176
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0002417
name: abdominal segment of trunk
def: "the abdominal segment of the torso." [Wikipedia:Lumbar]
synonym: "abdomen/pelvis/perineum" RELATED [MA:0000021]
synonym: "lower body" RELATED [MA:0000021]
synonym: "lumbar region" RELATED [UBERON:cjm]
xref: FMA:259211
xref: MA:0000021
xref: SCTID:362875007
is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk
is_a: UBERON:0011676 ! axial subdivision of organism
[Term]
id: UBERON:0002418
name: cartilage tissue
def: "Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts[VSAO]." [http://sourceforge.net/tracker/?func=detail&atid=2257941&aid=3396584&group_id=76834, VSAO:0000040, Wikipedia:Cartilage]
comment: Previous: "A portion of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate[GO]. Regular connective tissue, which consists of chondrocytes and related cells, the intercellular matrix of which is chondrified. Examples: hyaline cartilage, fibrocartilage, elastic cartilage[FMA]. an avascular supporting and articular skeletal tissue. It also functions as the primary endoskeletal support in vertebrate embryos. Cartilage is deposited by and is composed of chondroblasts and chondrocytes separated by an extracellular matrix, which may or may not mineralize depending on cartilage type, age, or taxon[Hall and Witten]." See also FMA:71500 Set of cartilages, FMA:55107 Cartilage organ, FMA:12264 Articular cartilage. // elements made from cartilage, cartilage-like, or chondroid tissues evolved in invertebrates[H&W]
subset: uberon_slim
subset: vertebrate_core
synonym: "cartilage tissue" EXACT [FMA:37377]
synonym: "cartilaginous tissue" EXACT []
xref: AAO:0000060
xref: AEO:0000087
xref: BTO:0000206
xref: EFO:0000949
xref: EHDAA2:0003087
xref: EV:0100141
xref: FMA:37377
xref: GAID:99
xref: galen:Cartilage
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg
xref: MA:0000104
xref: MAT:0000189
xref: MESH:A.02.165
xref: MIAA:0000189
xref: ncithesaurus:Cartilage
xref: ncithesaurus:Cartilagenous_Tissue
xref: OpenCyc:Mx4rvVjeOZwpEbGdrcN5Y29ycA
xref: SCTID:309312004
xref: TAO:0001501
xref: VHOG:0001207
xref: VSAO:0000040
xref: XAO:0000170
xref: ZFA:0005622
property_value: UBPROP:0000001 "A type of dense connective tissue. It is composed of cells called chondrocytes which are dispersed in a firm gel-like ground substance, called the matrix. Cartilage is avascular (contains no blood vessels) and nutrients are diffused through the matrix. Cartilage is found in the joints, the rib cage, the ear, the nose, in the throat and between intervertebral disks. It makes up virtually the entire skeleton in chondrichthyes.[AAO]" xsd:string
property_value: UBPROP:0000001 "Portion of tissue which is connective tissue composed of collagen and/or elastin fibers and chondrocytes. Cartilage is avascular and provides both skeletal functions and a framework upon which bone is deposited.[TAO]" xsd:string
property_value: UBPROP:0000001 "Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts.[VSAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO]" xsd:string
is_a: UBERON:0004755 ! skeletal tissue
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0002419
name: skin gland
def: "A gland that is part of a skin of body [Obol]." [OBOL:automatic]
comment: check FMA, use plural for now as general class not there
subset: organ_slim
synonym: "glandulae cutis" EXACT [FMA:71878, FMA:TA]
synonym: "skin glands" RELATED PLURAL []
synonym: "skin glands set" RELATED PLURAL []
xref: FMA:71878
xref: MA:0000146
is_a: UBERON:0003297 ! gland of integumental system
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002097
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0002097 ! skin of body
relationship: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0002420
name: basal ganglion
def: "one of a group of nuclei in the brains of vertebrates, situated at the base of the forebrain and strongly connected with the cerebral cortex, thalamus and other areas.ganglion in the head. The main components of the basal ganglia are the striatum, pallidum, substantia nigra, and subthalamic nucleus[WP]. Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF]." [Wikipedia:Basal_ganglia]
comment: Editor note: it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the set of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done.
subset: uberon_slim
synonym: "basal ganglia" RELATED PLURAL []
synonym: "basal ganglion of telencephalon" EXACT []
synonym: "basal nucleus" RELATED [MA:0000184]
synonym: "nuclei basales" RELATED LATIN [Wikipedia:Basal_ganglia]
xref: BTO:0000235
xref: EFO:0000904
xref: FMA:62514
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/Basal_Ganglia_and_Related_Structures.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Basal_Ganglia_and_Related_Structures.svg/200px-Basal_Ganglia_and_Related_Structures.svg.png
xref: SCTID:244434001
is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0010011 ! collection of basal ganglia
[Term]
id: UBERON:0002421
name: hippocampal formation
def: "Hippocampus (proper) plus dentate gyrus and subiculum[definition derived from NIF comments and ontology alignment]." [UBERON:cjm]
comment: Usage notes: The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum[NIF]. BTO:0000601 is placed here since it includes the DG. GO also includes dentate gyrus development as part of hippocampus development, so we assume when GO says "hippocampus" it means "hippocampal formation". In ABA HPF = (.. subiculum) + HIP, HIP = DG + AH.
subset: uberon_slim
synonym: "archipallium" RELATED [MA:0000189]
synonym: "hippocampus" NARROW [BTO:0000601, GO:0021766]
synonym: "hippocampus (crosby)" EXACT []
synonym: "major hippocampus" RELATED [BTO:0000601]
synonym: "primal cortex" RELATED [MA:0000189]
xref: ABA:HPF
xref: BM:Tel-HF
xref: BTO:0000601
xref: FMA:74038
xref: MA:0000189
xref: NIF_GrossAnatomy:birnlex_715
xref: SCTID:422867004
property_value: "spatially_disjoint_from" UBERON:0001950
property_value: "spatially_disjoint_from" UBERON:0002264
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0000203 {source="ISBN10:0471888893", source="GO"} ! pallium
[Term]
id: UBERON:0002422
name: fourth ventricle
def: "The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space[GO]." [Wikipedia:Fourth_ventricle]
subset: uberon_slim
subset: vertebrate_core
synonym: "4th ventricle" RELATED [MA:0000196]
synonym: "rhombencephalic vesicle" EXACT [ZFA:0000110]
synonym: "ventricle IV" EXACT [ZFA:0000110]
synonym: "ventricle of hindbrain" RELATED [BTO:0003426]
synonym: "ventricle of rhombencephalon" RELATED [BTO:0003426]
synonym: "ventriculus quartus" RELATED [BTO:0003426]
synonym: "ventriculus quartus" RELATED LATIN [Wikipedia:Fourth_ventricle]
xref: AAO:0011043
xref: BM:Pons-4V
xref: BTO:0003426
xref: EHDAA2:0000100
xref: EHDAA:896
xref: EMAPA:16479
xref: EMAPA:16917
xref: EV:0100310
xref: FMA:78469
xref: GAID:610
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png
xref: MA:0000196
xref: MESH:A.08.186.211.276.500
xref: ncithesaurus:Fourth_Ventricle_of_the_Brain
xref: NIF_GrossAnatomy:birnlex_1256
xref: OpenCyc:Mx4rv-7Q6pwpEbGdrcN5Y29ycA
xref: SCTID:180932000
xref: TAO:0000110
xref: VHOG:0000006
xref: XAO:0003099
xref: ZFA:0000110
property_value: UBPROP:0000001 "Fluid-filled brain cavity. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000001 "Irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space.[AAO]" xsd:string
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0002423
name: hepatobiliary system
def: "The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins. The parts are: liver, bile duct, gall bladder and hepatic duct" [GO:0061008, Wikipedia:Hepatobiliary_system]
subset: uberon_slim
subset: vertebrate_core
synonym: "hepaticobiliary system" EXACT [GO:0061008]
synonym: "liver and biliary system" EXACT []
synonym: "liver/biliary system" RELATED []
xref: AAO:0011056
xref: EFO:0000800
xref: EHDAA2:0000998
xref: EHDAA:2189
xref: EMAPA:16840
xref: EV:0100088
xref: MA:0000324
xref: MAT:0000024
xref: MIAA:0000024
xref: ncithesaurus:Hepatobiliary_System
xref: TAO:0000036
xref: VHOG:0000294
xref: XAO:0000132
xref: ZFA:0000036
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0002424
name: oral epithelium
def: "The epithelium that lines the oral cavity. The oral epithelium epithelial cells with many short microvilli as well as mucous cells, rodlet cells and taste buds." [ZFIN:ZDB-PUB-060921-12, ZFIN:ZDB-PUB-091204-24]
comment: Editor note: consider including separate class for developmental structure. Development notes: the avian oral epithelium has the developmental capacity to initiate tooth developmental programs with underlying grafts of non-avian oral ectomesenchyme [PMID:16488870]
subset: vertebrate_core
xref: AAO:0010357
xref: BTO:0001775
xref: EHDAA2:0001325
xref: EHDAA:2187
xref: EMAPA:16839
xref: EMAPA:26942
xref: MA:0000344
xref: ncithesaurus:Oral_Cavity_Epithelium
xref: TAO:0000816
xref: VHOG:0000187
xref: XAO:0003201
xref: ZFA:0000816
is_a: UBERON:0003350 ! epithelium of mucosa
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: adjacent_to UBERON:0000167 {source="AAO-modified"} ! oral cavity
relationship: part_of UBERON:0000166 ! oral opening
relationship: part_of UBERON:0003729 ! mouth mucosa
[Term]
id: UBERON:0002425
name: visceral serous pericardium
def: "Visceral serous membrane which is continuous with the parietal serous pericardium and is attached to the myocardium[FMA]." [Wikipedia:Visceral_pericardium]
subset: uberon_slim
synonym: "epicardium" RELATED [MA:0000484]
synonym: "lamina visceralis pericardii serosi" RELATED LATIN [Wikipedia:Epicardium]
synonym: "serous visceral pericardium" EXACT []
synonym: "visceral lamina of serous pericardium" EXACT []
synonym: "visceral layer of serous pericardium" EXACT []
synonym: "visceral pericardium" EXACT []
xref: EMAPA:17176
xref: EMAPA:19032
xref: FMA:84882
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: MA:0000484
xref: SCTID:243955001
xref: VHOG:0000538
is_a: UBERON:0002357 ! serous pericardium
relationship: attaches_to UBERON:0002349 ! myocardium
[Term]
id: UBERON:0002426
name: chest muscle
def: "A muscle organ that is part of a chest [Obol]." [OBOL:automatic]
synonym: "anterior thoracic region muscle organ" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax muscle organ" EXACT [OBOL:automatic]
synonym: "chest muscle organ" EXACT [OBOL:automatic]
synonym: "front of thorax muscle organ" EXACT [OBOL:automatic]
synonym: "muscle of thorax" EXACT [FMA:9619]
synonym: "muscle organ of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "muscle organ of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "muscle organ of chest" EXACT [OBOL:automatic]
synonym: "muscle organ of front of thorax" EXACT [OBOL:automatic]
synonym: "musculus thoracicus" EXACT []
synonym: "thoracic muscle" EXACT []
xref: BTO:0000508
xref: FMA:9619
xref: MA:0000548
is_a: UBERON:0003830 ! thoracic segment muscle
is_a: UBERON:0005175 ! chest organ
relationship: part_of UBERON:0001443
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0002427
name: arm skin
def: "A zone of skin that is part of an arm [Obol]." [OBOL:automatic]
synonym: "brachial region skin" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb skin" EXACT [OBOL:automatic]
synonym: "skin of arm" EXACT [OBOL:automatic]
synonym: "skin of brachial region" EXACT [OBOL:automatic]
synonym: "skin of proximal segment of free upper limb" EXACT [OBOL:automatic]
xref: EMAPA:18062
xref: FMA:37721
xref: MA:0000596
xref: ncithesaurus:Arm_Skin
is_a: UBERON:0003531 ! forelimb skin
relationship: part_of UBERON:0001460
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0002428
name: limb bone
def: "A bone that is part of a limb [Obol]." [OBOL:automatic]
comment: AO notes: NCITA includes clavicle. MA:'limb bone' is actually a bone of limb or girdle // Note that the formal definition is very inclusive, and includes sesamoids
synonym: "bone of limb" EXACT [OBOL:automatic]
synonym: "free limb bone" EXACT [UBERON:cjm, UBERONREF:0000003]
xref: EFO:0000880
xref: EFO:0000945
xref: MAT:0000151
xref: MIAA:0000151
xref: ncithesaurus:Bone_of_the_Extremity
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004375 ! bone of appendage
is_a: UBERON:0010740 ! bone of appendage girdle complex
relationship: part_of UBERON:0002101
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002101 ! limb
relationship: develops_from UBERON:0010881 ! limb bone cartilaginous condensation
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0002429
name: cervical lymph node
def: "Cervical lymph nodes are lymph nodes found in the neck. [WP,unvetted]." [Wikipedia:Cervical_lymph_node]
subset: uberon_slim
synonym: "lymph node of neck" EXACT []
xref: FMA:61213
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Lymph_node_regions.jpg/200px-Lymph_node_regions.jpg
xref: MA:0000736
xref: ncithesaurus:Cervical_Lymph_Node
xref: SCTID:181757009
is_a: UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000974
intersection_of: UBERON:0000029 ! lymph node
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0002430
name: lateral hypothalamic area
def: "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating. [WP,unvetted]." [Wikipedia:Lateral_hypothalamic_area]
subset: uberon_slim
synonym: "area hypothalamica lateralis" EXACT [FMA:62030, FMA:TA]
synonym: "lateral division of hypothalamus" EXACT []
synonym: "lateral group of hypothalamic nuclei" EXACT []
synonym: "lateral hypothalamic group" EXACT []
synonym: "lateral hypothalamic nucleus" RELATED [MA:0000834]
synonym: "lateral hypothalamic region" EXACT [FMA:62030]
synonym: "lateral hypothalamic zone (crosby)" EXACT []
xref: ABA:LHA
xref: BM:Die-Hy-HLA
xref: FMA:62030
xref: GAID:640
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000834
xref: MESH:A.08.186.211.730.385.357.300
xref: NIF_GrossAnatomy:birnlex_4037
property_value: "spatially_disjoint_from" UBERON:0001906
property_value: "spatially_disjoint_from" UBERON:0001907
property_value: "spatially_disjoint_from" UBERON:0001931
property_value: "spatially_disjoint_from" UBERON:0001933
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus
[Term]
id: UBERON:0002431
name: pars anterior
is_obsolete: true
consider: UBERON:0006965
[Term]
id: UBERON:0002432
name: pars intermedia of adenohypophysis
def: "boundary between the anterior and posterior lobes of the pituitary. It contains three types of cells: basophils, chromophobes, and colloid-filled cysts. The cysts are the remainder of Rathke's pouch. In human fetal life, this area produces melanocyte stimulating hormone or MSH which causes the release of melanin pigment in skin melanocytes (pigment cells). However, the pars intermedia is normally either very small or entirely absent in adulthood. In lower vertebrates (fish, amphibians) MSH from the pars intermedia is responsible for darkening of the skin, often in response to changes in background color. This color change is due to MSH stimulating the dispersion of melanin pigment in dermal (skin) melanophore cells." [Wikipedia:Pars_intermedia]
comment: The intermediate part of adenohypophysis: an ill-defined region between the two lobes of the hypophysis; some systems of nomenclature consider it part of the neurohypophysis. In humans a defined structure develops during embryogenesis, but only scattered cells are retained when the gland matures[BTO].
subset: uberon_slim
subset: vertebrate_core
synonym: "intermediate lobe" RELATED [BTO:0001788]
synonym: "intermediate lobe of adenohypophysis" EXACT []
synonym: "intermediate lobe of pituitary" EXACT []
synonym: "pars intermedia" EXACT [MA:0000855]
synonym: "pars intermedia (glandula pituitaria)" EXACT [FMA:74632, FMA:TA]
synonym: "pars intermedia adenohypophyseos" RELATED [BTO:0001788]
synonym: "pars intermedia adenohypophyseos" RELATED LATIN [Wikipedia:Pars_intermedia]
synonym: "pars intermedia adenohypophysis" EXACT [FMA:74632, FMA:TA]
synonym: "pars intermedia lobi anterior hypophyseos" RELATED [BTO:0001788]
xref: BTO:0001788
xref: EHDAA2:0001417
xref: EHDAA:8765
xref: EMAPA:17516
xref: FMA:74632
xref: http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray1181.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray1181.png/200px-Gray1181.png
xref: MA:0000855
xref: SCTID:245534008
xref: TAO:0001197
xref: VHOG:0001178
xref: ZFA:0001197
property_value: RO:0002161 NCBITaxon:8782
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: adjacent_to UBERON:0002198 ! neurohypophysis
relationship: adjacent_to UBERON:0006377 ! remnant of Rathke's pouch
relationship: part_of UBERON:0002196 {source="FMA", source="ZFA"} ! adenohypophysis
[Term]
id: UBERON:0002433
name: pars tuberalis of adenohypophysis
def: "The pars tuberalis is part of the anterior lobe of the pituitary gland, and wraps the pituitary stalk in a highly vascularized sheath. [WP,unvetted]." [Wikipedia:Pars_tuberalis]
subset: uberon_slim
subset: vertebrate_core
synonym: "pars tuberalis" EXACT [MA:0000856]
synonym: "pars tuberalis (glandula pituitaria)" EXACT [FMA:74631, FMA:TA]
synonym: "pars tuberalis adenohypophyseos" RELATED LATIN [Wikipedia:Pars_tuberalis]
synonym: "pars tuberalis adenohypophysis" EXACT [FMA:74631, FMA:TA]
xref: BTO:0001739
xref: EHDAA2:0001419
xref: EHDAA:8767
xref: EMAPA:17517
xref: FMA:74631
xref: http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Pituitary_gland_representation.PNG/200px-Pituitary_gland_representation.PNG
xref: MA:0000856
xref: TAO:0001196
xref: VHOG:0001114
property_value: "homologous_to" ZFA:0005581
property_value: RO:0002161 NCBITaxon:7955
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002196 ! adenohypophysis
[Term]
id: UBERON:0002434
name: pituitary stalk
alt_id: UBERON:0003014
def: "The pituitary stalk (also known as the infundibular stalk or simply the infundibulum) is the connection between the hypothalamus and the posterior pituitary. It carries axons from the magnocellular neurosecretory cells of the hypothalamus down to the posterior pituitary where they release their hormones into the blood. This connection is called the hypothalamohypophyseal tract, and is responsible for the release of oxytocin and antidiuretic hormone[WP]." [Wikipedia:Pituitary_stalk]
subset: uberon_slim
subset: vertebrate_core
synonym: "hypophyseal stalk" EXACT [MP:0009463]
synonym: "hypophysial stalk" RELATED [ZFA:0001199]
synonym: "infundibular stem" BROAD [MP:0009463]
synonym: "infundibular stem of neurohypophysis" EXACT [FMA:74635]
synonym: "infundibulum" EXACT [ZFA:0001199]
synonym: "infundibulum" EXACT [MA:0000858, ZFA:0001199]
synonym: "infundibulum (lobus posterior) (glandula pituitaria)" EXACT [FMA:74635, FMA:TA]
synonym: "infundibulum hypophysis" EXACT [FMA:74635, FMA:TA]
synonym: "infundibulum neurohypophyseos" RELATED LATIN [Wikipedia:Pituitary_stalk]
synonym: "infundibulum of hypothalamus" RELATED [ZFA:0001199]
synonym: "infundibulum of neurohypophysis" EXACT [FMA:74635]
synonym: "infundibulum of pituitary gland" EXACT [FMA:74635]
synonym: "infundibulum of posterior lobe of pituitary gland" EXACT [FMA:74635]
synonym: "neurohypophysis infundibulum" EXACT [FMA:74635]
synonym: "tuberal part of hypophysis" EXACT [FMA:74635]
xref: BTO:0000768
xref: EHDAA2:0000828
xref: EHDAA:7538
xref: EMAPA:17520
xref: FMA:74635
xref: http://upload.wikimedia.org/wikipedia/commons/b/b9/Pituitary_gland_representation.PNG
xref: MA:0000858
xref: ncithesaurus:Pituitary_Stalk
xref: NIF_GrossAnatomy:birnlex_912
xref: SCTID:245529009
xref: TAO:0001199
xref: VHOG:0000245
xref: XAO:0004210
xref: ZFA:0001199
property_value: UBPROP:0000001 "A short stalk connecting the pituitary with the brain. Axons of secretory cells in the floor of the diencephalon traverse the infundibulum and terminate in the neurohypophysis.[TAO]" xsd:string
is_a: UBERON:0002784 ! regional part of diencephalon
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
disjoint_from: UBERON:0005968 ! infundibulum of hair follicle
relationship: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0002198 ! neurohypophysis
[Term]
id: UBERON:0002435
name: striatum
def: "A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]." [GOC:jl, Wikipedia:Striatum]
comment: AO notes: FMA divides striatum of neuraxis into 4, neostriatum is seperate class. In NIF these are synonyms. TODO - check striatum vs corpus striatum see http://en.wikipedia.org/wiki/Striatum#History. Check caudoputamen
subset: uberon_slim
synonym: "corpus striatum" RELATED [MA:0000891]
synonym: "neostriatum" EXACT [GO:0021756, Wikipedia:Striatum]
synonym: "striate nucleus" EXACT [GO:0021756, Wikipedia:Striatum]
xref: ABA:STR
xref: BM:N
xref: BTO:0000418
xref: EFO:0000109
xref: EMAPA:17549
xref: FMA:77618
xref: FMA:83683
xref: http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/BrainCaudatePutamen.svg/200px-BrainCaudatePutamen.svg.png
xref: MA:0000891
xref: MESH:A.08.186.211.730.885.105.487.550
xref: ncithesaurus:Striatum
xref: NIF_GrossAnatomy:birnlex_1672
property_value: "spatially_disjoint_from" UBERON:0006514
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0000204 {source="GO"} ! ventral part of telencephalon
relationship: part_of UBERON:0000369 {source="BTO"} ! corpus striatum
relationship: part_of UBERON:0002420 {source="NIF"} ! basal ganglion
[Term]
id: UBERON:0002436
name: primary visual cortex
def: "The term area 17 of Brodmann (human) refers to a subdivision of the cytoarchitecturally defined occipital region of cerebral cortex in the human. Defined by the band of Gennari, which gives it the name striate (furrowed) area, it occupies the banks of the calcarine sulcus which are located in the cuneus and the lingual gyrus of the occipital lobe. Cytoarchitecturally it is bounded by the area 18 of Brodmann (human) which surrounds it ( Brodmann-1909 ). In the mouse ( Paxinos-2001 ) and the rat ( Swanson-1998 ) it is located on the dorsolateral surface of the cerebral hemisphere[BrainInfo]." [BrainInfo:2102, Wikipedia:Visual_cortex]
subset: uberon_slim
synonym: "area 17 of brodmann" RELATED [Wikipedia:Visual_cortex]
synonym: "area 17 of brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1748]
synonym: "area striata" RELATED []
synonym: "b09-17" EXACT [NIF_GrossAnatomy:birnlex_1748]
synonym: "BA17" RELATED [Wikipedia:Visual_cortex]
synonym: "brodmann (1909) area 17" EXACT [NIF_GrossAnatomy:birnlex_1748]
synonym: "Brodmann area 17" EXACT [Wikipedia:Visual_cortex]
synonym: "brodmann area 17" RELATED [Wikipedia:Visual_cortex]
synonym: "brodmann area 17, striate" EXACT [NIF_GrossAnatomy:birnlex_1748]
synonym: "calcarine cortex" RELATED [BrainInfo:2102]
synonym: "occipital visual neocortex" RELATED [GEO:GSM336648]
synonym: "striate cortex" EXACT [FMA:236871]
synonym: "V1" RELATED []
synonym: "visual association area" RELATED [Wikipedia:Visual_cortex]
synonym: "visual association cortex" RELATED [Wikipedia:Visual_cortex]
xref: BM:Tel-Cx-V1
xref: BTO:0004703
xref: FMA:236871
xref: http://upload.wikimedia.org/wikipedia/commons/7/70/Brodmann_areas_17_18_19.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Brodmann_areas_17_18_19.png/200px-Brodmann_areas_17_18_19.png
xref: MA:0000914
xref: ncithesaurus:Primary_Visual_Cortex
xref: NIF_GrossAnatomy:birnlex_1748
xref: SCTID:384772005
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0002021 ! occipital lobe
[Term]
id: UBERON:0002437
name: cerebral white matter
def: "White matter is one of the two main solid components of the central nervous system. It is composed of myelinated nerve cell processes, or axons, which connect various grey matter areas (the locations of nerve cell bodies) of the brain to each other and carry nerve impulses between neurons. Cerebral and spinal white matter do not contain dendrites, which can only be found in grey matter along with neural cell bodies and shorter axons (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_711]
xref: BTO:0000236
xref: FMA:241998
xref: MA:0000945
xref: ncithesaurus:Cerebral_White_Matter
xref: NIF_GrossAnatomy:birnlex_711
xref: SCTID:361691006
is_a: UBERON:0011299 ! white matter of telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002438
name: ventral tegmental nucleus
comment: AO notes: ventral and anterior tegmental nucleus are synonyms in FMA, but we split these into seperate classes. This is consistent with MA, ABA and neuronames, which treat these as distinct (NN suggest the anterior is a rodent specific structure). Location notes: this is part of pons and brainstem in MA, but this leads to an inconsistency with ABA. We err on the side of safety, and exclude the relationship to the pons here.
subset: vertebrate_core
synonym: "anterior tegmental nuclei" RELATED INCONSISTENT [FMA:72435]
synonym: "anterior tegmental nucleus" RELATED INCONSISTENT [FMA:72435, http://www.medilexicon.com/medicaldictionary.php?t=61761]
synonym: "deep tegmental nucleus of Gudden" EXACT [FMA:72435]
synonym: "nucleus of Gudden" RELATED [MA:0001031]
synonym: "nucleus tegmentales anteriores" RELATED [FMA:TA]
synonym: "nucleus tegmentalis anterior" RELATED [FMA:TA]
synonym: "ventral raphe tegmental nucleus" EXACT [FMA:72435]
synonym: "ventral tegmental nuclei" EXACT [FMA:72435]
synonym: "ventral tegmental nucleus (gudden)" EXACT [FMA:72435]
synonym: "ventral tegmental nucleus of gudden" EXACT [FMA:72435]
xref: ABA:VTN
xref: FMA:72435
xref: MA:0001031
xref: NIF_GrossAnatomy:birnlex_1421
xref: SCTID:369244006
xref: TAO:0000275
xref: ZFA:0000275
property_value: "spatially_disjoint_from" UBERON:0001715
property_value: "spatially_disjoint_from" UBERON:0001944
property_value: "spatially_disjoint_from" UBERON:0001947
property_value: "spatially_disjoint_from" UBERON:0001966
property_value: "spatially_disjoint_from" UBERON:0002141
property_value: "spatially_disjoint_from" UBERON:0002691
property_value: "spatially_disjoint_from" UBERON:0002696
property_value: "spatially_disjoint_from" UBERON:0002722
property_value: "spatially_disjoint_from" UBERON:0002995
property_value: "spatially_disjoint_from" UBERON:0003040
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
disjoint_from: UBERON:0010036 ! anterior tegmental nucleus
relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum
[Term]
id: UBERON:0002439
name: myenteric nerve plexus
def: "plexus of unmyelinated nerve fibers and postganglionic autonomic cell bodies lying in the muscular coat of the esophagus, stomach and intestines that communicate with the submucosal, subserosal and enteric plexuses[MP]. Part of the enteric nervous system, Auerbach's plexus (or myenteric plexus) exists between the longitudinal and circular layers of muscularis externa in the gastrointestinal tract and provides motor innervation to both layers and secretomotor innervation to the mucosa, having both parasympathetic and sympathetic input, whereas Meissner's plexus has only parasympathetic fibers. It arises from cells in the Nucleus ala cinerea, the parasympathetic nucleus of origin for the tenth cranial nerve, located in the medulla oblongata. The fibers are carried by both the anterior and posterior vagal nerves. It is found in the muscles of the esophagus, stomach, and intestine. The myenteric plexus is the major nerve supply to the gastrointestinal tract and control GI tract motility[WP]." [MP:0010801, Wikipedia:Auerbach's_plexus]
comment: AO notes: note that FMA uses Meissner's plexus as a synonym, rather than separate class
subset: uberon_slim
synonym: "Auberbach plexus" EXACT [NIF_GrossAnatomy:nlx_anat_100306]
synonym: "Auberbach's plexus" EXACT [NIF_GrossAnatomy:nlx_anat_100306]
synonym: "Auberbachs plexus" EXACT [NIF_GrossAnatomy:nlx_anat_100306]
synonym: "Auerbach's plexus" EXACT [FMA:63252, HP:0002251]
synonym: "Meissner's plexus" RELATED INCONSISTENT [FMA:63252]
synonym: "myenteric plexus" EXACT []
synonym: "plexus myentericus" RELATED [BTO:0002436]
synonym: "plexus nervosus submucosus" EXACT [FMA:63252, FMA:TA]
synonym: "plexus submucosus" EXACT [FMA:63252, FMA:TA]
synonym: "Remak's plexus" EXACT [FMA:63252]
synonym: "submucous plexus" RELATED []
xref: BTO:0002436
xref: FMA:63252
xref: GAID:798
xref: MA:0001148
xref: MESH:A.08.800.050.050.500
xref: ncithesaurus:Myenteric_Nerve_Plexus
xref: NIF_GrossAnatomy:nlx_anat_100306
xref: SCTID:267716001
is_a: UBERON:0001816 ! autonomic nerve plexus
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000429 ! enteric plexus
[Term]
id: UBERON:0002440
name: inferior cervical ganglion
def: "The inferior cervical ganglion is situated between the base of the transverse process of the last cervical vertebra and the neck of the first rib, on the medial side of the costocervical artery. Its form is irregular; it is larger in size than the middle cervical ganglion, and is frequently fused with the first thoracic ganglion. [WP,unvetted]." [Wikipedia:Inferior_cervical_ganglion]
subset: uberon_slim
synonym: "ganglion cervicale inferioris" RELATED [BTO:0000240]
synonym: "ganglion cervicale inferius" RELATED LATIN [Wikipedia:Inferior_cervical_ganglion]
synonym: "stellate ganglion" RELATED [MA:0001154]
synonym: "variant cervical ganglion" EXACT []
xref: BTO:0000240
xref: EHDAA:8939
xref: EMAPA:18439
xref: FMA:6961
xref: http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray844.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png
xref: MA:0001154
xref: ncithesaurus:Inferior_Cervical_Ganglion
xref: RETIRED_EHDAA2:0000815
xref: SCTID:279280008
is_a: UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0002441
name: cervicothoracic ganglion
def: "The stellate ganglion (or cervicothoracic ganglion) is a sympathetic ganglion formed by the fusion of the inferior cervical ganglion and the first thoracic ganglion. Stellate ganglion is located at the level of C7, anterior to the transverse process of C7, posterior to the neck of the first rib, and just below the subclavian artery. [WP,unvetted]." [Wikipedia:Cervicothoracic_ganglion]
subset: uberon_slim
synonym: "cervicothoracic sympathetic ganglion" EXACT []
synonym: "ganglion stellatum" EXACT [FMA:6469, FMA:TA]
synonym: "stellate ganglion" EXACT []
xref: BTO:0001815
xref: EMAPA:18226
xref: FMA:6469
xref: GAID:711
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7a/Gray845.png/200px-Gray845.png
xref: MA:0001157
xref: MESH:A.08.340.315.350.800
xref: SCTID:181101006
is_a: UBERON:0001991 ! cervical ganglion
relationship: part_of UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0002442
name: axillary nerve trunk
synonym: "circumflex nerve trunk" RELATED [MA:0001175]
synonym: "right axillary neural trunk" EXACT []
synonym: "trunk of right axillary nerve" EXACT [FMA:65265]
xref: FMA:65265
xref: MA:0001175
is_a: UBERON:0001147 ! trunk of peripheral nerve
[Term]
id: UBERON:0002443
name: choroidal blood vessel
def: "A blood vessel that is part of a choroid [Obol]." [OBOL:automatic]
comment: cannot find singular in FMA, using Set class
synonym: "blood vessel of choroid" EXACT [OBOL:automatic]
synonym: "blood vessel of choroid coat" EXACT [OBOL:automatic]
synonym: "blood vessel of choroidea" EXACT [OBOL:automatic]
synonym: "blood vessel of posterior uvea" EXACT [OBOL:automatic]
synonym: "choroid blood vessel" EXACT [OBOL:automatic]
synonym: "choroid blood vessels" EXACT []
synonym: "choroid blood vessels set" EXACT []
synonym: "choroid coat blood vessel" EXACT [OBOL:automatic]
synonym: "choroidea blood vessel" EXACT [OBOL:automatic]
synonym: "posterior uvea blood vessel" EXACT [OBOL:automatic]
synonym: "vasa sanguinea choroideae" EXACT [FMA:76550, FMA:TA]
xref: EMAPA:17828
xref: FMA:76550
xref: MA:0001237
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001776
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001776 ! choroid
relationship: part_of UBERON:0001776 ! choroid
[Term]
id: UBERON:0002444
name: lens fiber
def: "The lens fibers form the bulk of the lens. They are long, thin, transparent cells, with diameters typically between 4-7 micrometres and lengths of up to 12 mm long." [Wikipedia:Lens_(anatomy)#Lens_fibers]
comment: TODO - check plural vs singular. in FMA lens fiber is a cell - FMA:70950 Lens cell. Other ontologies don't appear to commit one way or another.
synonym: "fibrae lentis" EXACT [FMA:76827, FMA:TA]
synonym: "lens fibers" EXACT []
synonym: "lens fibers set" EXACT []
synonym: "lens fibres" EXACT []
xref: BTO:0000724
xref: EHDAA:4745
xref: EHDAA:9065
xref: EMAPA:17841
xref: FMA:76827
xref: MA:0001304
xref: ncithesaurus:Lens_Fiber
xref: RETIRED_EHDAA2:0000979
xref: VHOG:0000444
xref: XAO:0004096
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000965 ! lens of camera-type eye
[Term]
id: UBERON:0002445
name: triquetral
def: "The triquetral bone (also called triquetrum bone, pyramidal bone, three-cornered bone, and triangular bone) is located in the wrist on the medial side of the proximal row of the carpus between the lunate and pisiform bones. It is on the ulnar side of the hand, but does not articulate with the ulna. It connects with the pisiform, hamate, and lunate bones. It is the 3rd most commonly fractured carpal bone. The triangular bone may be distinguished by its pyramidal shape, and by an oval isolated facet for articulation with the pisiform bone. It is situated at the upper and ulnar side of the carpus. To facilitate its palpation in an exam, the hand must be radially deviated so that the triquetrium moves out from under the ulnar styloid process. The triquetrum may be difficult to find, since it also lies under the pisiform. The etymology derives from the Latin triquetrus which means 'three-cornered'. In reptiles and amphibians, the bone is instead referred to as the ulnare, since (at least in the most primitive fossils) it articulates with the ulna. [WP,unvetted]." [Wikipedia:Triquetral]
comment: AAO: ulnare: One of two element that constitute the basal row of carpals. It articulates with the ulna, radius, radiale, centrale (element Y), and carpal 5(4). This element originates from one condensation center or the fusion of two elements (ulnare and intermedium). Occasionally it may fuse to carpal 5(4), the radiale, or other elements.
subset: uberon_slim
synonym: "cuneiform bone of hand" EXACT []
synonym: "cuneiform of hand" RELATED [MA:0001347]
synonym: "os triquetrum" EXACT [FMA:23715, FMA:TA]
synonym: "os ulnare" EXACT [UBERON:cjm]
synonym: "triangular" RELATED [MA:0001347]
synonym: "triangular bone" EXACT []
synonym: "triquetral bone" EXACT []
synonym: "triquetrum" RELATED [MA:0001347]
synonym: "ulnar carpal bone" RELATED [MA:0001347]
synonym: "ulnare" EXACT HOMOLOGY [AAO:0000845]
xref: AAO:0000845
xref: FMA:23715
xref: galen:Triquetral
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0001347
xref: ncithesaurus:Triangular_Bone
xref: SCTID:181965000
property_value: UBPROP:0000001 "One of two element that constitute the basal row of carpals. It articulates with the ulna, radius, radiale, centrale (element Y), and carpal 5(4). This element originates from one condensation center or the fusion of two elements (ulnare and intermedium). Occasionally it may fuse to carpal 5(4), the radiale, or other elements.[AAO]" xsd:string
is_a: UBERON:0001480 ! proximal carpal bone
[Term]
id: UBERON:0002446
name: patella
def: "The patella, also known as the knee cap or kneepan, is a thick, circular-triangular bone which articulates with the femur and covers and protects the knee joint. It is the largest sesamoid bone in the human body. It is attached to the tendon of the quadriceps femoris muscle, which contracts to extend/straighten the knee. The vastus intermedialis muscle is attached to the base of patella. The vastus lateralis and vastus medialis are attached to lateral and medial borders of patella respectively. The patella is stabilized by the insertion of vastus medialis and the prominence of the anterior femoral condyles, which prevent lateral dislocation during flexion. The retinacular fibres of the patella also stabilize it during exercise. The primary functional role of the patella is knee extension. The patella increases the leverage that the tendon can exert on the femur by increasing the angle at which it acts. The patella ossifies between the ages 2-6 years. In some people it may be absent congenitally or hypoplastic. In 2% of the population there is a bipartite patella, which is usually asymptomatic. Direct trauma, however, may produce symptoms that mimic those of a fracture. The patella has convergently evolved in placental mammals and birds; marsupials have only rudimentary, non-ossified patellae. In more primitive tetrapods, including living amphibians and reptiles, the muscle tendons from the upper leg are attached directly to the tibia, and the patella is not present. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834, Wikipedia:Patella]
comment: See also: fabella
subset: uberon_slim
synonym: "knee bone" RELATED [FMA:24485]
synonym: "knee cap" RELATED [Wikipedia:Patella]
synonym: "patella" RELATED LATIN [Wikipedia:Patella]
xref: FMA:24485
xref: GAID:203
xref: galen:Patella
xref: http://upload.wikimedia.org/wikipedia/commons/9/9a/Knee_diagram.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Knee_diagram.svg/200px-Knee_diagram.svg.png
xref: MA:0001374
xref: MESH:A.02.835.232.500.624
xref: ncithesaurus:Patella
xref: SCTID:182083008
is_a: UBERON:0001479 {source="FMA"} ! sesamoid bone
is_a: UBERON:0005893 ! leg bone
is_a: UBERON:0011141 ! appendicular ossicle
relationship: connected_to UBERON:0000981
relationship: part_of UBERON:0001465
intersection_of: UBERON:0001474 ! bone
intersection_of: connected_to UBERON:0000981 ! femur
intersection_of: part_of UBERON:0001465 ! knee
relationship: connected_to UBERON:0000981 ! femur
relationship: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0002447
name: palatine gland
def: "The palatine glands form a continuous layer on its posterior surface and around the uvula. They are primarily mucous secreting glands, as opposed to serous or mixed secreting glands. [WP,unvetted]." [Wikipedia:Palatine_gland]
subset: uberon_slim
synonym: "palatine glands set" EXACT []
synonym: "palatine salivary gland" EXACT []
synonym: "salivary palatine gland" EXACT []
xref: FMA:59795
xref: MA:0001584
xref: ncithesaurus:Palatine_Salivary_Gland
xref: SCTID:13604002
is_a: UBERON:0001830 ! minor salivary gland
[Term]
id: UBERON:0002448
name: fungiform papilla
def: "The fungiform papillae are mushroom shaped e (projections) on the tongue. They are located on the top (dorsal) surface of the tongue, scattered throughout the filiform papilla but mainly at the tip and lateral margins of the tongue. They have taste buds on their superior (upper) surface which can distinguish the five tastes: sweet, sour, bitter, salty, and umami. They have a core of connective tissue. They are innervated by the seventh cranial nerve, more specifically via the submandibular ganglion, chorda tympani, and geniculate ganglion ascending to the solitary nucleus (the sensory component of the Vagus nerve in the brainstem). [WP,unvetted]." [Wikipedia:Fungiform_papilla]
subset: uberon_slim
synonym: "fungiform papilla of tongue" EXACT [FMA:54821]
synonym: "fungiform papillae" EXACT PLURAL []
synonym: "fungiform papillae set" EXACT PLURAL []
synonym: "papillae fungiformes" RELATED LATIN [Wikipedia:Fungiform_papilla]
xref: EMAPA:18657
xref: FMA:54821
xref: http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Gray1014.png/200px-Gray1014.png
xref: MA:0001595
xref: ncithesaurus:Fungiform_Papilla
xref: NIF_GrossAnatomy:birnlex_4106
xref: SCTID:80673002
is_a: UBERON:0001726 {source="MA"} ! papilla of tongue
[Term]
id: UBERON:0002450
name: decidua
def: "Uterine lining (endometrium) during a pregnancy, which forms the maternal part of the placenta. It is formed under the influence of progesterone and forms highly-characteristic cells." [Wikipedia:Decidua]
comment: todo - check mp syn
subset: uberon_slim
synonym: "decidous membrane" EXACT [FMA:85538]
synonym: "decidua basalis" RELATED []
synonym: "endometrium" RELATED []
synonym: "maternal decidual layer" RELATED [MP:0004256]
synonym: "placenta maternal decidual layer" RELATED []
synonym: "uterine decidua" RELATED [BTO:0001360]
xref: BTO:0001360
xref: EMAPA:29917
xref: FMA:85538
xref: GAID:378
xref: http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray33.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray33.png/200px-Gray33.png
xref: MA:0001722
xref: MAT:0000290
xref: MESH:A.05.360.319.679.490.373
xref: MIAA:0000290
xref: ncithesaurus:Decidua
xref: SCTID:362842004
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000478 {source="FMA"} ! extraembryonic structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001987 {source="MA"} ! placenta
[Term]
id: UBERON:0002451
name: uterine gland
def: "tube like gland lined by ciliated columnar epithelium[WP]. The mucous secreting gland associated with the epithelium lining the uterus. These glands develop and secrete each menstrual cycle and are thought to provide initial blastocyst nutrition prior to implantation[BTO]" [Wikipedia:Uterine_glands]
comment: todo - check FMA
subset: organ_slim
subset: uberon_slim
synonym: "glandulae uterinae" EXACT [FMA:71647, FMA:TA]
synonym: "glandulae uterinae" RELATED LATIN [Wikipedia:Uterine_glands]
synonym: "uterine glands" EXACT []
synonym: "uterine glands set" EXACT []
xref: BTO:0003433
xref: BTO:0004518
xref: EMAPA:29919
xref: FMA:71647
xref: FMA:86488
xref: http://upload.wikimedia.org/wikipedia/commons/2/28/Gray1169.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray1169.png/200px-Gray1169.png
xref: MA:0001726
xref: ncithesaurus:Uterine_Gland
xref: SCTID:361377009
is_a: UBERON:0005398 ! female reproductive gland
relationship: has_part UBERON:0007592 {source="Wikipedia"} ! ciliated columnar epithelium
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0002453
name: ethmoid sinus
def: "The ethmoid sinus, one of the paranasal sinuses, is the collective name for the ethmoidal air cells. Each ethmoid sinus is an air-space enclosed within the ethmoid bone. The ethmoidal air cells consist of numerous thin-walled cavities situated in the ethmoidal labyrinth and completed by the frontal, maxilla, lacrimal, sphenoidal, and palatine bones. They lie between the upper parts of the nasal cavities and the orbits, and are separated from these cavities by thin bony laminæ. [WP,unvetted]." [Wikipedia:Ethmoid_bone_sinus]
subset: uberon_slim
synonym: "cellulae ethmoidales" RELATED LATIN [Wikipedia:Ethmoid_sinus]
synonym: "ethmoidal sinus" EXACT [FMA:84115]
xref: FMA:84115
xref: GAID:356
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png
xref: MA:0001792
xref: MESH:A.04.531.621.267
xref: ncithesaurus:Ethmoid_Sinus
xref: SCTID:181206009
is_a: UBERON:0001825 ! paranasal sinus
[Term]
id: UBERON:0002454
name: dorsal metacarpal artery
def: "Aanastomosis of dorsal carpal branch of the radial artery and the dorsal carpal branch of the ulnar artery near the back of the wrist. It is made up of the dorsal carpal branches of both the ulnar and radial arteries. It also anastomoses with the anterior interosseous artery and the posterior interosseous artery. The arch gives off three dorsal metacarpal arteries." [Wikipedia:Dorsal_metacarpal_artery]
comment: check FMA, singular. specific subtypes e.g. FMA:22761 first dorsal metacarpal artery
subset: uberon_slim
synonym: "arteriae metacarpales dorsales" EXACT [FMA:70800, FMA:TA]
synonym: "dorsal metacarpal arteries" EXACT []
synonym: "dorsal metacarpal arteries set" EXACT []
xref: FMA:70800
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray529.png/200px-Gray529.png
xref: MA:0001944
xref: ncithesaurus:Dorsal_Metacarpal_Artery
xref: SCTID:244320002
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002455
name: common plantar digital arteries
def: "." [Wikipedia:Common_plantar_digital_arteries]
synonym: "arteriae digitales plantares communes" EXACT [FMA:70821, FMA:TA]
synonym: "arteriae digitales plantares communes" RELATED LATIN [Wikipedia:Common_plantar_digital_arteries]
synonym: "common plantar digital arteries" EXACT []
synonym: "common plantar digital arteries set" EXACT [FMA:70821]
xref: FMA:70821
xref: http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray555.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray555.png/200px-Gray555.png
xref: MA:0001966
is_a: UBERON:0006138 ! plantar digital artery
relationship: has_part UBERON:0001410 ! common palmar digital artery
[Term]
id: UBERON:0002456
name: internal thoracic artery
def: "In human anatomy, the internal thoracic artery (ITA), previously known as the internal mammary artery (a name still common among surgeons), is an artery that supplies the anterior chest wall and the breasts. It is a paired artery, with one running along each side of the sternum, to continue after its bifurcation as the superior epigastric and musculophrenic arteries. [WP,unvetted]." [Wikipedia:Internal_thoracic_artery]
comment: note MA has both mammary and thoracic
subset: uberon_slim
synonym: "arteria thoracica interna, arteria mammaria interna" RELATED LATIN [Wikipedia:Internal_thoracic_artery]
synonym: "internal mammary artery" EXACT ATTRIBUTION_REQUIRED [MA:0001982]
synonym: "internal thoracic mammary artery" EXACT []
xref: EHDAA2:0000880
xref: EHDAA:8585
xref: EMAPA:18617
xref: FMA:3960
xref: http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray522.png
xref: MA:0001982
xref: MA:0001984
xref: ncithesaurus:Internal_Mammary_Artery
xref: OpenCyc:Mx4rMe0MIao8EduQrwACs5b6Bw
xref: SCTID:244239009
is_a: UBERON:0004573 ! systemic artery
relationship: branch_of UBERON:0001533 ! subclavian artery
relationship: part_of UBERON:0001533 ! subclavian artery
[Term]
id: UBERON:0002457
name: intersegmental artery
subset: vertebrate_core
synonym: "7th intersegmental artery" EXACT []
synonym: "seventh intersegmental artery" EXACT []
xref: EHDAA2:0000882
xref: EHDAA:4340
xref: EMAPA:17616
xref: MA:0001985
xref: SCTID:338130007
xref: TAO:0001061
xref: VHOG:0000225
xref: ZFA:0001061
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002458
name: spinal artery
def: "." [Wikipedia:Spinal_artery]
subset: uberon_slim
subset: vertebrate_core
synonym: "spinal arteries" RELATED [ZFA:0000682]
xref: EHDAA2:0001890
xref: EHDAA:4355
xref: EMAPA:18241
xref: MA:0002043
xref: ncithesaurus:Spinal_Artery
xref: SCTID:244228006
xref: TAO:0000682
xref: ZFA:0000682
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001130
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0002459
name: inferior palpebral vein
comment: check FMA, singular.
synonym: "inferior palpebral veins" EXACT []
synonym: "inferior palpebral veins set" EXACT []
synonym: "lower palpebral vein" RELATED [MA:0002147]
synonym: "venae palpebrales inferiores" EXACT [FMA:70847, FMA:TA]
xref: FMA:70847
xref: MA:0002147
xref: ncithesaurus:Inferior_Palpebral_Vein
xref: SCTID:422559003
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002460
name: vesical vein
def: "The vesical veins are tributaries of the internal iliac veins. [WP,unvetted]." [Wikipedia:Vesical_veins]
comment: check FMA, singular.
subset: uberon_slim
synonym: "venae vesicales" EXACT [FMA:70911, FMA:TA]
synonym: "vesical veins" EXACT []
synonym: "vesical veins set" EXACT []
xref: FMA:70911
xref: http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png
xref: MA:0002263
xref: SCTID:12683000
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002461
name: anterior abdominal wall muscle
synonym: "muscle of anterior abdominal wall" EXACT [FMA:20278]
xref: EHDAA2:0000125
xref: FMA:20278
xref: MA:0002268
xref: ncithesaurus:Anterior_Abdominal_Wall_Muscle
is_a: UBERON:0002378 {source="FMA"} ! muscle of abdomen
relationship: part_of UBERON:0006635
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0006635 ! anterior abdominal wall
relationship: part_of UBERON:0006635 ! anterior abdominal wall
[Term]
id: UBERON:0002462
name: erector spinae muscle group
def: "A bundle of muscles and tendons that is paired and runs more or less vertically. It extends throughout the lumbar, thoracic and cervical regions, and lies in the groove to the side of the vertebral column." [Wikipedia:Erector_spinae_muscles]
comment: AO notes: isa muscle organ in MA.
subset: uberon_slim
synonym: "erector spinae" EXACT [MA:0002289]
synonym: "extensor spinae" EXACT [Wikipedia:Erector_spinae]
synonym: "extensor spinae muscle" RELATED [Wikipedia:Erector_spinae]
synonym: "extensor spinae muscles" EXACT [Wikipedia:Erector_spinae]
synonym: "m. erector spinae" RELATED LATIN [Wikipedia:Erector_spinae_muscles]
synonym: "sacrospinalis" EXACT DEPRECATED [BTO:0001652]
xref: BTO:0001652
xref: EHDAA2:0000454
xref: EHDAA:9456
xref: EMAPA:18168
xref: FMA:71302
xref: http://upload.wikimedia.org/wikipedia/commons/d/de/Gray1124.png
xref: MA:0002289
xref: ncithesaurus:Erector_Spinae
xref: OpenCyc:Mx4rwC7lnJwpEbGdrcN5Y29ycA
xref: SCTID:244852007
xref: VHOG:0000984
is_a: UBERON:0001015 {source="FMA"} ! musculature
is_a: UBERON:0003897 {source="EHDAA2"} ! axial muscle
relationship: adjacent_to UBERON:0001130 ! vertebral column
relationship: develops_from UBERON:0010961 {source="EHDAA2"} ! erector spinae pre-muscle mass
relationship: has_muscle_insertion UBERON:0001076 {notes="Spinous processes of T1 and T2 thoracic vertebrae and the cervical vertebrae", source="dbpedia"} ! spinous process of vertebra
relationship: has_muscle_insertion UBERON:0002413 {notes="Spinous processes of T1 and T2 thoracic vertebrae and the cervical vertebrae", source="dbpedia"} ! cervical vertebra
relationship: has_muscle_nerve UBERON:0006839 {source="dbpedia"} ! posterior ramus of spinal nerve
[Term]
id: UBERON:0002463
name: hamstring muscle
def: "In human anatomy, the hamstring refers to one of the three posterior thigh muscles, or to the tendons that make up the borders of the space behind the knee. In modern anatomical contexts, however, they usually refer to the posterior thigh muscles, or the tendons of the semitendinosus, the semimembranosus and the biceps femoris. In quadrupeds, it refers to the single large tendon found behind the knee or comparable area. [WP,unvetted]." [Wikipedia:Hamstring]
comment: check FMA, singular.
subset: uberon_slim
synonym: "hamstring muscles" EXACT []
synonym: "hamstring muscles set" EXACT []
synonym: "hamstrings" EXACT []
xref: BTO:0003179
xref: EHDAA2:0000727
xref: EHDAA:8295
xref: EMAPA:19072
xref: EMAPA:19145
xref: FMA:81022
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray1239.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Biceps_femoris_muscle_long_head.PNG/200px-Biceps_femoris_muscle_long_head.PNG
xref: MA:0002312
xref: ncithesaurus:Hamstring
xref: OpenCyc:Mx4rvVjdtJwpEbGdrcN5Y29ycA
xref: VHOG:0000844
is_a: UBERON:0001630 ! muscle organ
relationship: has_muscle_antagonist UBERON:0001378 {source="dbpedia"} ! rectus femoris
relationship: has_muscle_insertion UBERON:0000979 {source="dbpedia"} ! tibia
relationship: has_muscle_insertion UBERON:0001446 {source="dbpedia"} ! fibula
relationship: has_muscle_nerve UBERON:0001322 {source="dbpedia", notes="sciatic nerve"} ! sciatic nerve
[Term]
id: UBERON:0002464
name: nerve trunk
synonym: "trunk of nerve" EXACT []
xref: BTO:0000927
xref: EHDAA:4675
xref: EMAPA:16986
xref: FMA:5913
xref: MA:0002408
xref: SCTID:281248001
is_a: UBERON:0004732 ! segmental subdivision of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002465
name: lymphoid system
alt_id: UBERON:0002096
def: "The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system (Wikipedia)." [https://sourceforge.net/tracker/?func=detail&aid=3153468&group_id=76834&atid=1205376, Wikipedia:Lymphoid_system]
comment: We follow FMA and MA in distinguishing between lymphatic system and lymphoid system, with lymhoid tissue part of the non-lymphatic component, although these terms are often used interchangeably. We assume the ZFA term lymphatic tissue actually corresponds to the broader class (e.g. ZFA lymph node in the ZFA lymphatic system). See tracker for more comments.
subset: uberon_slim
subset: vertebrate_core
synonym: "lymphatic circulatory system" RELATED [UBERON:cjm]
synonym: "lymphatic system" NARROW [ZFA:0000385]
synonym: "systema lymphoideum" RELATED LATIN [Wikipedia:Lymphoid_system]
xref: AAO:0010522
xref: EFO:0000870
xref: EHDAA2:0001043
xref: EHDAA:8677
xref: EMAPA:18248
xref: FMA:74594
xref: GAID:931
xref: http://upload.wikimedia.org/wikipedia/commons/b/b3/TE-Lymphatic_system_diagram.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Illu_capillary_microcirculation.jpg/200px-Illu_capillary_microcirculation.jpg
xref: MA:0002435
xref: MAT:0000197
xref: MIAA:0000197
xref: ncithesaurus:Lymphatic_System
xref: OpenCyc:Mx4rwQAKT5wpEbGdrcN5Y29ycA
xref: SCTID:362589007
xref: TAO:0000385
xref: VHOG:0000842
xref: XAO:0003199
xref: ZFA:0000385
property_value: UBPROP:0000001 "Part of the circulatory system which consists of a series of vessels which collect blood (exclusive of erythrocytes) which seep through capillary walls and return it to the veins.[AAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0002193 ! hemolymphoid system
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0002466
name: intestine secretion
def: "Clear to pale yellow watery secretions from the glands lining the small intestine walls. Secretion is stimulated by the mechanical pressure of partly digested food in the intestine." [Wikipedia:Succus_entericus]
subset: uberon_slim
synonym: "intestinal secretion" EXACT [FMA:62974]
synonym: "succus entericus" EXACT []
xref: BTO:0000644
xref: FMA:62974
xref: GAID:1162
xref: MA:0002515
xref: MESH:A.12.200.390
xref: ncithesaurus:Intestinal_Secretion
is_a: UBERON:0000456 ! bodily secretion
relationship: secreted_by UBERON:0000160
intersection_of: UBERON:0000456 ! bodily secretion
intersection_of: secreted_by UBERON:0000160 ! intestine
relationship: secreted_by UBERON:0000160 ! intestine
[Term]
id: UBERON:0002467
name: filiform papilla
def: "The filiform papillae are thin, long 'V'-shaped cones that don't contain taste buds but are the most numerous. These papillae are mechanical and not involved in gustation covering most of the dorsum (upper surface). They are small and arranged in lines parallel to the V-shaped row of circumvallate papillae, except at the tip of the tongue where they are aligned transversely. Projecting from their apices are numerous filamentous processes, or secondary papillae. These are of a whitish tint, owing to the thickness and density of the epithelium of which they are composed. This epithelium has undergone a peculiar modification as the cells have become cornified and elongated into dense, imbricated, brush-like processes. They contain also a number of elastic fibers, which render them firmer and more elastic than the papillae of mucous membrane generally. The larger and longer papillae of this group are sometimes termed papillae conicae. Fungiform papillae are found dispersed throughout the filiform papillae. [WP,unvetted]." [Wikipedia:Filiform_papilla]
subset: uberon_slim
synonym: "filiform papilla of tongue" EXACT [FMA:54820]
synonym: "filiform papillae" EXACT []
synonym: "filiform papillae set" EXACT []
synonym: "papillae filiformes" RELATED LATIN [Wikipedia:Filiform_papilla]
xref: EMAPA:18655
xref: EMAPA:18873
xref: FMA:54820
xref: http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1016.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1016.png/200px-Gray1016.png
xref: MA:0002678
xref: ncithesaurus:Filiform_Papilla
xref: NIF_GrossAnatomy:birnlex_4104
xref: SCTID:58743008
is_a: UBERON:0001726 ! papilla of tongue
[Term]
id: UBERON:0002468
name: foliate papilla
def: "Taste-buds, the end-organs of the gustatory sense, are scattered over the mucous membrane of the mouth and tongue at irregular intervals. They occur especially in the sides of the vallate papillae. There is a localized area at the side of the base of the tongue, the foliate papillae, in which they are especially abundant. [WP,unvetted]." [Wikipedia:Foliate_papilla]
subset: uberon_slim
synonym: "foliate papilla of tongue" EXACT [FMA:54823]
synonym: "foliate papillae" EXACT []
synonym: "foliate papillae set" EXACT []
synonym: "papillae foliatae" RELATED LATIN [Wikipedia:Foliate_papilla]
xref: FMA:54823
xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray1021.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray1021.png/200px-Gray1021.png
xref: MA:0002679
xref: ncithesaurus:Foliate_Papilla
xref: NIF_GrossAnatomy:birnlex_4105
xref: SCTID:362098003
is_a: UBERON:0001726 ! papilla of tongue
[Term]
id: UBERON:0002469
name: esophagus mucosa
alt_id: UBERON:0003345
def: "A mucosa that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophageal mucosa" EXACT []
synonym: "esophagus mucosa" EXACT [FMA:62996]
synonym: "esophagus mucosa of organ" EXACT [OBOL:automatic]
synonym: "esophagus mucous membrane" EXACT [OBOL:automatic]
synonym: "esophagus organ mucosa" EXACT [OBOL:automatic]
synonym: "gullet mucosa" EXACT [OBOL:automatic]
synonym: "gullet mucosa of organ" EXACT [OBOL:automatic]
synonym: "gullet mucous membrane" EXACT [OBOL:automatic]
synonym: "gullet organ mucosa" EXACT [OBOL:automatic]
synonym: "lamina muscularis mucosae oesophageae" EXACT [FMA:62996, FMA:TA]
synonym: "mucosa of esophagus" EXACT [OBOL:automatic]
synonym: "mucosa of gullet" EXACT [OBOL:automatic]
synonym: "mucosa of oesophagus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of esophagus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gullet" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oesophagus" EXACT [OBOL:automatic]
synonym: "mucous membrane of esophagus" EXACT []
synonym: "mucous membrane of gullet" EXACT [OBOL:automatic]
synonym: "mucous membrane of oesophagus" EXACT [FMA:62996]
synonym: "muscularis mucosae of oesophagus" RELATED INCONSISTENT [FMA:62996]
synonym: "oesophageal mucosa" EXACT [FMA:62996]
synonym: "oesophagus mucosa" EXACT []
synonym: "oesophagus mucosa of organ" EXACT [OBOL:automatic]
synonym: "oesophagus mucous membrane" EXACT [OBOL:automatic]
synonym: "oesophagus organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of esophagus" EXACT [OBOL:automatic]
synonym: "organ mucosa of gullet" EXACT [OBOL:automatic]
synonym: "organ mucosa of oesophagus" EXACT [OBOL:automatic]
synonym: "tunica mucosa esophagi" EXACT []
synonym: "tunica mucosa oesophageae" EXACT [FMA:62996, FMA:TA]
synonym: "tunica mucosa oesophagi" EXACT []
synonym: "tunica mucosa oesophagi" RELATED [BTO:0002859]
xref: BTO:0002859
xref: EMAPA:26981
xref: EMAPA:26991
xref: FMA:62996
xref: MA:0002680
xref: ncithesaurus:Esophageal_Mucosa
xref: SCTID:362127004
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 ! wall of esophagus
[Term]
id: UBERON:0002470
name: autopod region
def: "Terminal segment of free upper limb, immediately distal to the zeugopod region. The fully developed autopod consists of the autopod skeleton plus associated structures such as integument, muscle tissue, vasculature etc. The autopod is divided into mesopodial, metapodiual, and acropodial segments. Examples: human hand, mouse paw, human foot" [UBERON:cjm]
comment: Naming conventions for pod terms under discussion within phenoscape group; note that this refers to the limb segment, not just the skeleton.
subset: uberon_slim
synonym: "autopod" BROAD [MA:0002714]
synonym: "autopodial limb segment" EXACT [MA:th]
synonym: "autopodial segment" EXACT []
synonym: "autopodium" EXACT []
synonym: "autopodium region" EXACT []
synonym: "distal free limb segment" EXACT [FMA:83015]
synonym: "distal segment of free limb" EXACT [FMA:83015]
synonym: "paw" RELATED []
synonym: "pod" RELATED []
xref: BTO:0004359
xref: EFO:0000877
xref: FMA:83015
xref: MA:0002714
xref: MAT:0000091
xref: MIAA:0000091
xref: ncithesaurus:Paw
xref: SCTID:95936004
is_a: UBERON:0002529 ! limb segment
relationship: develops_from UBERON:0010130 {evidence="definitional"} ! autopod plate
relationship: distally_connected_to UBERON:0002471 ! zeugopod
[Term]
id: UBERON:0002471
name: zeugopod
def: "The middle part of the limb (e.g. between the elbow and wrist)" []
comment: Naming conventions for pod terms under discussion within phenoscape group
subset: uberon_slim
synonym: "epipodium" EXACT [MA:th]
synonym: "middle free limb segment" EXACT [FMA:83016]
synonym: "middle limb segment" EXACT []
synonym: "middle part of limb" BROAD []
synonym: "zeugopod limb segment" EXACT [MA:th]
synonym: "zeugopodial limb segment" EXACT [MA:th]
synonym: "zeugopodium" EXACT []
xref: EFO:0000878
xref: FMA:83016
xref: MA:0002716
xref: MAT:0000092
xref: MIAA:0000092
is_a: UBERON:0002529 ! limb segment
relationship: distal_to UBERON:0002472 ! stylopod
[Term]
id: UBERON:0002472
name: stylopod
def: "Limb segment that is the proximal part of the limb (e.g. between shoulder and elbow)." []
comment: Naming conventions for pod terms under discussion within phenoscape group
subset: uberon_slim
synonym: "propodium" EXACT [MA:th]
synonym: "proximal free limb segment" EXACT [FMA:83014]
synonym: "proximal part of limb" BROAD []
synonym: "stylopodial limb segment" EXACT [MA:th]
synonym: "stylopodium" EXACT []
xref: EFO:0000879
xref: FMA:83014
xref: MA:0002717
xref: MAT:0000093
xref: MIAA:0000093
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0002473
name: intercerebral commissure
def: "Class of unpaired telencephalic white matter structures consisting of fiber pathways which project across the midsagittal plane and which serve to interconnect telencephalic structures lying within the contralateral cerebral hemisphere[FMA]." [FMA:67930]
synonym: "brain commissure" NARROW []
synonym: "interhemispheric commissure" RELATED [MA:0002721]
xref: FMA:67930
xref: MA:0002721
is_a: UBERON:0005970 ! brain commissure
relationship: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0002437 ! cerebral white matter
[Term]
id: UBERON:0002474
name: cerebellar peduncular complex
def: "A composite structure of the brain stem, which in NeuroNames is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM)[NIF]." [NIF_GrossAnatomy:birnlex_970, Wikipedia:Cerebellar_peduncle]
comment: todo - this requires work for making consistent with ABA, which strictly separates cerebellum from brainstem. in MA, cerebellar peduncle is part of both brainstem and cerebellar white matter.
subset: uberon_slim
synonym: "cerebellar peduncles" EXACT []
synonym: "cerebellar peduncles and decussations" EXACT [NIF_GrossAnatomy:birnlex_970]
synonym: "cerebellar peduncles set" EXACT []
synonym: "cerebellum peduncles" EXACT []
synonym: "pedunculi cerebellares" EXACT [FMA:77791, FMA:TA]
xref: FMA:77791
xref: ncithesaurus:Cerebellar_Peduncle
xref: NIF_GrossAnatomy:birnlex_970
is_a: UBERON:0002317 {source="NIF"} ! white matter of cerebellum
[Term]
id: UBERON:0002475
name: saphenous nerve
def: "The saphenous nerve (long or internal saphenous nerve) is the largest cutaneous branch of the femoral nerve. [WP,unvetted]." [Wikipedia:Saphenous_nerve]
subset: uberon_slim
synonym: "nervus saphenus" RELATED LATIN [Wikipedia:Saphenous_nerve]
xref: FMA:45262
xref: http://upload.wikimedia.org/wikipedia/commons/d/de/Gray827.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/de/Gray827.png/200px-Gray827.png
xref: MA:0002761
xref: OpenCyc:Mx4rvY0kgpwpEbGdrcN5Y29ycA
xref: SCTID:181079005
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003431 ! leg nerve
relationship: branch_of UBERON:0001267 ! femoral nerve
[Term]
id: UBERON:0002476
name: lateral globus pallidus
def: "The lateral globus pallidus (or external, GPe) receives a strong glutamatergic projection from the subthalamic nucleus. The two form a particular system: a coupled pacemaker. The axons of the external globus pallidum go essentially to the subthalamic nucleus. They go also to other elements of the basal ganglia system, the striatum, the substantia nigra pars reticulata, and the internal globus pallidus, where they release the neurotransmitter GABA. GPe is particular in comparison to the other elements of the set by the fact that it does not work as an output base of the basal ganglia (not sending axons to the thalamus) but as the main regulator of the basal ganglia system. It is sometimes used as a target for deep brain stimulation as a treatment for Parkinson's disease. [WP,unvetted]." [Wikipedia:Lateral_globus_pallidus]
subset: uberon_slim
synonym: "external globus pallidus" EXACT []
synonym: "external pallidum" EXACT [NIF_GrossAnatomy:birnlex_1610]
synonym: "external part of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1610]
synonym: "globus pallidus external segment" EXACT [FMA:61839, MA:0002767, NIF_GrossAnatomy:birnlex_1610]
synonym: "globus pallidus externus" EXACT []
synonym: "globus pallidus lateral segment" RELATED [MA:0002767]
synonym: "globus pallidus lateralis" EXACT [BTO:0002247]
synonym: "globus pallidus, lateral segment" EXACT []
synonym: "lateral pallidal segment" EXACT []
synonym: "lateral pallidum" EXACT [NIF_GrossAnatomy:birnlex_1610]
synonym: "lateral part of globus pallidus" EXACT []
synonym: "lateral segment of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1610]
synonym: "pallidum I" RELATED [BTO:0002247]
synonym: "pallidus II" EXACT [FMA:61839]
synonym: "pars lateralis globi pallidi medialis" EXACT [FMA:61839, FMA:TA]
xref: ABA:GPe
xref: BTO:0002247
xref: EHDAA2:0004462
xref: FMA:61839
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif
xref: MA:0002767
xref: NIF_GrossAnatomy:birnlex_1610
xref: SCTID:361560008
property_value: "spatially_disjoint_from" UBERON:0002477
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002477
name: medial globus pallidus
def: "The medial globus pallidus (or internal, GPi) is one of the output nuclei of the basal ganglia. The GABA-containing neurons send their axons to specific nuclei of the dorsal thalamus (VA and VL), to the centromedian complex and to the pedunculopontine complex. The efferent bundle is constituted first of the ansa and fasciculus lenticularis, then crosses the internal capsule as the Edinger's comb system then arrives at the laterosuperior corner of the subthalamic nucleus and constitutes the Forel's field H2, then H, and suddenly changes its direction to form H1 that goes to the inferior part of the thalamus. The distribution of axonal islands is widespread in the lateral region of the thalamus. The innervation of the central region is done by collaterals. [WP,unvetted]." [Wikipedia:Medial_globus_pallidus]
comment: See also: endopeduncular nucleus
subset: uberon_slim
synonym: "entopeduncular nucleus" RELATED [MA:0002768]
synonym: "entopeduncular nucleus (monakow)" EXACT []
synonym: "globus pallidus inernal segment" RELATED [MA:0002768]
synonym: "globus pallidus internal segment" EXACT []
synonym: "globus pallidus internus" EXACT []
synonym: "globus pallidus medial segment" RELATED [MA:0002768]
synonym: "globus pallidus medialis" EXACT [BTO:0002248]
synonym: "globus pallidus, medial segment" EXACT []
synonym: "internal globus pallidus" EXACT []
synonym: "internal pallidum" EXACT [NIF_GrossAnatomy:birnlex_1555]
synonym: "internal part of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1555]
synonym: "medial pallidal segment" EXACT []
synonym: "medial part of globus pallidus" EXACT []
synonym: "medial segment of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1555]
synonym: "mesial pallidum" EXACT []
synonym: "pallidum I" RELATED []
synonym: "pallidus I" RELATED []
synonym: "pars medialis globi pallidi" EXACT [FMA:61840, FMA:TA]
xref: ABA:GPi
xref: BTO:0002248
xref: FMA:61840
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Brain_structure.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif
xref: MA:0002768
xref: NIF_GrossAnatomy:birnlex_1555
xref: SCTID:361562000
property_value: "spatially_disjoint_from" UBERON:0002476
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0001875 {source="MA"} ! globus pallidus
[Term]
id: UBERON:0002478
name: orbitosphenoid
def: "One of two thin triangular plates, which arise from the upper and anterior parts of the body, and, projecting lateralward, end in sharp points." [Wikipedia:Lesser_wing_of_sphenoid_bone]
subset: vertebrate_core
synonym: "ala minor (os sphenoidale)" EXACT [FMA:52869]
synonym: "alæ parvæ" RELATED LATIN [Wikipedia:Lesser_wing_of_sphenoid_bone]
synonym: "ingrassia's process" EXACT [FMA:52869]
synonym: "lesser wing of sphenoid" EXACT [FMA:52869]
synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773]
synonym: "lesser wing of sphenoidal bone" EXACT [FMA:52869]
xref: AAO:0000345
xref: EMAPA:18719
xref: FMA:52869
xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png
xref: MA:0002773
xref: SCTID:361737003
xref: TAO:0000253
xref: VHOG:0001153
xref: ZFA:0000253
property_value: UBPROP:0000001 "Endochondral ossification of the lateral sides of the braincase.[AAO]" xsd:string
property_value: UBPROP:0000001 "Large median unpaired cartilage bone consisting of two diverging plates. Positioned medial to the eye. The orbitosphenoid develops from the Trabeculae communis and forms the anterior and anterolateral boundary of the orbital foramen and constitutes a significant part of the sidewalls and floor of the cranial cavity. Bordered by the lateral ethmoid anteriorly, and the pterosphenoid posteriorly, The orbitosphenoid may extend ventrally to meet the parasphenoid. In the adult, the orbitosphenoid is fused ventrally to the parasphenoid via a thin sheet of bone.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from taenia marginalis anterior (TAO:0001505)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps orbitosphenoid-lateral ethmoid joint (TAO:0001941)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps orbitosphenoid-prootic joint (TAO:0001794)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps pterosphenoid-orbitosphenoid joint (TAO:0001831)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0011164 ! neurocranium bone
relationship: develops_from UBERON:0005687 ! orbitosphenoid cartilage condensation
relationship: develops_from UBERON:0009638 ! orbitosphenoid ossification center
relationship: part_of UBERON:0001677 ! sphenoid bone
relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium
relationship: part_of UBERON:0003111 {source="Kardong"} ! sphenoid region
[Term]
id: UBERON:0002479
name: dorsal lateral geniculate nucleus
synonym: "dorsal nucleus of lateral geniculate body" RELATED [MA:0002775]
synonym: "lateral geniculate complex, dorsal part" EXACT []
synonym: "nucleus dorsalis corporis geniculati lateralis" EXACT [FMA:62214, FMA:TA]
synonym: "nucleus geniculatus lateralis pars dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1595]
xref: ABA:LGd
xref: BM:GLd
xref: FMA:62214
xref: MA:0002775
xref: NIF_GrossAnatomy:birnlex_1595
property_value: "spatially_disjoint_from" UBERON:0001927
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001926 ! lateral geniculate body
[Term]
id: UBERON:0002480
name: ventral lateral geniculate nucleus
synonym: "corpus geniculatum externum, nucleus accessorius" EXACT [NIF_GrossAnatomy:birnlex_1597]
synonym: "corpus geniculatum laterale, pars oralis" EXACT [NIF_GrossAnatomy:birnlex_1597]
synonym: "dorsal_nucleus_of_lateral_geniculate_body" EXACT [NIF_GrossAnatomy:birnlex_1597]
synonym: "griseum praegeniculatum" EXACT [NIF_GrossAnatomy:birnlex_1597]
synonym: "lateral geniculate complex, ventral part" EXACT []
synonym: "lateral geniculate complex, ventral part (kolliker)" EXACT [NIF_GrossAnatomy:birnlex_1597]
synonym: "lateral geniculate nucleus, ventral part" EXACT [NIF_GrossAnatomy:birnlex_1597]
synonym: "nucleus corporis geniculati lateralis, pars ventralis" EXACT [NIF_GrossAnatomy:birnlex_1597]
synonym: "nucleus praegeniculatus" EXACT [NIF_GrossAnatomy:birnlex_1597]
synonym: "nucleus pregeniculatum" EXACT [NIF_GrossAnatomy:birnlex_1597]
synonym: "nucleus pregeniculatus" EXACT [FMA:62215, FMA:TA]
synonym: "nucleus ventralis corporis geniculati lateralis" EXACT [FMA:62215, FMA:TA]
synonym: "praegeniculatum" EXACT [NIF_GrossAnatomy:birnlex_1597]
synonym: "pregeniculate nucleus" EXACT []
synonym: "ventral nucleus of lateral geniculate body" RELATED [MA:0002776]
synonym: "ventral part of the lateral geniculate complex" EXACT [NIF_GrossAnatomy:birnlex_1597]
xref: ABA:LGv
xref: BM:LGv
xref: FMA:62215
xref: MA:0002776
xref: NIF_GrossAnatomy:birnlex_1597
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001926 ! lateral geniculate body
[Term]
id: UBERON:0002481
name: bone tissue
def: "Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts[VSAO]." [VSAO:0000047, Wikipedia:Bone_tissue]
subset: uberon_slim
synonym: "calcium tissue" EXACT []
synonym: "osseous tissue" EXACT []
synonym: "osteogenic tissue" EXACT [VSAO:curator]
xref: FMA:224804
xref: galen:BoneTissue
xref: MA:0002780
xref: MESH:A.02.835.232
xref: ncithesaurus:Bone_Tissue
xref: VSAO:0000047
xref: ZFA:0005621
property_value: UBPROP:0000001 "Skeletal tissue with a collagen-rich extracellular matrix vascularized, mineralized with hydroxyapatite and typically including osteocytes located in lacunae that communicate with one another by cell processes (in canaliculi). Bone is deposited by osteoblasts.[VSAO]" xsd:string
is_a: UBERON:0004755 {source="VSAO"} ! skeletal tissue
disjoint_from: UBERON:0005090 ! muscle structure
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0002482
name: lamellar bone
def: "Bone tissue that has a regular parallel alignment of collagen into sheets (lamellae) and is mechanically strong." [Wikipedia:Bone#Woven_or_lamellar]
comment: histological classification, lamellar vs woven. Note that only FMA has woven
xref: FMA:224806
xref: galen:LamellarBone
xref: MA:0002781
is_a: UBERON:0002481 ! bone tissue
[Term]
id: UBERON:0002483
name: trabecular bone tissue
def: "Cancellous bone, synonymous with trabecular bone or spongy bone, is one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occupies the interior region of bones. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula. Its Latin name is substantia spongiosa or substantia spongiosa ossium. The words cancellous and trabecular refer to the tiny, lattice-shaped that form the tissue. [WP,unvetted]." [Wikipedia:Trabecular_bone]
comment: one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occurs at the ends of long bones, proximal to joints and within the interior of vertebrae. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula.
subset: uberon_slim
synonym: "cancellated bone" RELATED [BTO:0001700]
synonym: "cancellous bone" EXACT [FMA:24019, MA:0002782]
synonym: "cancellous bone tissue" EXACT []
synonym: "spongy bone" EXACT []
synonym: "spongy bone tissue" EXACT []
synonym: "substantia spongiosa" EXACT [Wikipedia:Trabecular_bone]
synonym: "substantia spongiosa ossium" EXACT [Wikipedia:Trabecular_bone]
synonym: "substantia trabecularis ossium" RELATED [BTO:0001700]
synonym: "trabecular bone" EXACT []
synonym: "trabecular substance" RELATED [BTO:0001700]
xref: BTO:0001700
xref: FMA:24019
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Illu_compact_spongy_bone.jpg/200px-Illu_compact_spongy_bone.jpg
xref: MA:0002782
is_a: UBERON:0002481 ! bone tissue
relationship: part_of UBERON:0002482 ! lamellar bone
[Term]
id: UBERON:0002484
name: bone marrow cavity
def: "the central cavity of bone shafts where red bone marrow and/or yellow bone marrow (adipose tissue) is stored; hence, the medullary cavity is also known as the marrow cavity. Located in the main shaft (cortical bone) of a long bone (diaphysis) (consisting mostly of compact bone), the medullary cavity has walls composed of spongy bone (cancellous bone) and is lined with a thin, vascular membrane (endosteum)" [Wikipedia:Bone_marrow_of_ovaryry_cavity]
comment: AO notes: not clear if the FMA intends to have two classes. MP:0000065: "the medullary cavities of the bones."
synonym: "cavity of cancellous bone" EXACT []
synonym: "marrow cavity" EXACT [FMA:83698]
synonym: "medullary cavity" EXACT [FMA:83698]
xref: FMA:75147
xref: FMA:83698
xref: MA:0002783
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001439 ! compact bone
[Term]
id: UBERON:0002485
name: prostate duct
def: "the minute canals that pass the prostatic secretions to the urethra." [MP:0009734]
synonym: "duct of prostate" EXACT []
synonym: "duct of prostate gland" EXACT []
synonym: "prostate duct" EXACT []
synonym: "prostate gland duct" EXACT []
synonym: "prostatic duct" EXACT []
xref: FMA:19580
xref: MA:0002785
xref: ncithesaurus:Prostatic_Duct
xref: SCTID:362276000
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: part_of UBERON:0002367
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0002367 ! prostate gland
relationship: develops_from UBERON:0003820 {source="PMID:18977204"} ! prostate bud
relationship: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0002486
name: glottis
def: "The glottis is defined as the combination of the vocal folds and the space in between the folds. [WP,unvetted]." [Wikipedia:Glottis]
subset: uberon_slim
xref: AAO:0010610
xref: BTO:0001627
xref: FMA:55414
xref: GAID:343
xref: http://upload.wikimedia.org/wikipedia/commons/3/32/Arytenoid_cartilage.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Arytenoid_cartilage.png/200px-Arytenoid_cartilage.png
xref: MA:0002788
xref: MESH:A.04.329.364
xref: ncithesaurus:Glottis
xref: SCTID:264482000
property_value: UBPROP:0000001 "A small, slit-like aperture lying longitudinally on the floor of the pharynx.[AAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0002487
name: tooth cavity
def: "." [Wikipedia:Tooth_cavity]
subset: uberon_slim
synonym: "cavitas dentis" EXACT []
synonym: "cavitas pulparis" EXACT [FMA:55660, FMA:TA]
synonym: "cavity of tooth" RELATED [MA:0002792]
synonym: "pulp cavity" EXACT []
synonym: "pulp cavity of tooth" EXACT []
synonym: "tooth pulp cavity" RELATED [MA:0002792]
xref: FMA:55660
xref: MA:0002792
xref: MESH:A.14.254.900.265
xref: SCTID:362105008
is_a: UBERON:0002558 ! organ cavity
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0002488
name: helix
def: "." [Wikipedia:Helix]
subset: uberon_slim
synonym: "helical part of pinna" EXACT []
synonym: "helix (auricula)" EXACT []
synonym: "helix of auricle of ear" EXACT []
synonym: "helix of ear" EXACT []
synonym: "helix of pinna" EXACT []
xref: FMA:60992
xref: MA:0002793
xref: ncithesaurus:Helix
xref: OpenCyc:Mx4rwRDEk5wpEbGdrcN5Y29ycA
xref: SCTID:279607004
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0002489
name: coronal suture
def: "The coronal suture is a dense, fibrous connective tissue joint that separates the frontal and parietal bones of the skull. At birth, the bones of the skull do not meet. [WP,unvetted]." [Wikipedia:Coronal_suture]
subset: uberon_slim
synonym: "coronal suture of skull" EXACT []
synonym: "fronto-parietal suture" EXACT [PMID:11784098]
synonym: "frontoparietal suture" EXACT [PMID:11784098]
synonym: "sutura coronalis" RELATED LATIN [Wikipedia:Coronal_suture]
xref: EMAPA:19225
xref: FMA:52928
xref: http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray188-Coronal_suture.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray188-Coronal_suture.png/200px-Gray188-Coronal_suture.png
xref: MA:0002795
xref: OpenCyc:Mx4rv2eGHZwpEbGdrcN5Y29ycA
xref: SCTID:244510008
is_a: UBERON:0003685 ! cranial suture
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: connects UBERON:0000209
relationship: connects UBERON:0000210
intersection_of: UBERON:0003685 ! cranial suture
intersection_of: connects UBERON:0000209 ! tetrapod frontal bone
intersection_of: connects UBERON:0000210 ! tetrapod parietal bone
relationship: connects UBERON:0000209 ! tetrapod frontal bone
relationship: connects UBERON:0000210 ! tetrapod parietal bone
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0002490
name: frontal suture
def: "The frontal suture is a dense connective tissue structure that divides the two halves of the frontal bone of the skull in infants and children. It usually disappears by the age of six, with the two halves of the frontal bone being fused together. If it does not disappear it may be called a 'metopic suture' or 'sutura frontalis persistens. ' If the suture is not present at birth (craniosynostosis) it will cause a keel-shaped deformity of the skull called 'trigonocephaly. ' It is present in a fetal skull so that the skull can bend and is very elastic at the time of birth. The baby's head literally bends when coming out of the mother's womb. The space is filled as the child grows older. [WP,unvetted]." [Wikipedia:Frontal_suture]
subset: uberon_slim
synonym: "frontal suture of skull" EXACT []
synonym: "metopic suture" RELATED [MA:0002796]
synonym: "sutura frontalis" EXACT [Wikipedia:Frontal_suture]
synonym: "sutura frontalis" RELATED LATIN [Wikipedia:Frontal_suture]
synonym: "sutura metopica" EXACT [FMA:52989, FMA:TA]
xref: EMAPA:19226
xref: FMA:52989
xref: http://upload.wikimedia.org/wikipedia/commons/d/d1/Frontal_suture.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray134.png/200px-Gray134.png
xref: MA:0002796
xref: SCTID:136854008
is_a: UBERON:0003685 ! cranial suture
relationship: connects UBERON:0000209 {notes="two halves of the frontal bone"} ! tetrapod frontal bone
relationship: connects UBERON:0000209 {cardinality="2"} ! tetrapod frontal bone
[Term]
id: UBERON:0002491
name: lambdoid suture
def: "The lambdoid suture (or lambdoidal suture) is a dense, fibrous connective tissue joint on the posterior aspect of the skull that connects the parietal and temporal bones with the occipital bone. Its name comes from its lambda-like shape. [WP,unvetted]." [Wikipedia:Lambdoid_suture]
subset: uberon_slim
synonym: "lambdoid suture of skull" EXACT []
synonym: "lambdoidal suture" RELATED [MA:0002797]
synonym: "sutura lambdoidea" RELATED LATIN [Wikipedia:Lambdoid_suture]
synonym: "sutura lambdoidea" RELATED [Wikipedia:Lambdoid_suture]
xref: EMAPA:19227
xref: FMA:52933
xref: http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray188-Lambdoid_suture.png
xref: MA:0002797
xref: SCTID:361830007
is_a: UBERON:0003685 ! cranial suture
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: connects UBERON:0000210
relationship: connects UBERON:0001676
relationship: connects UBERON:0001678
intersection_of: UBERON:0003685 ! cranial suture
intersection_of: connects UBERON:0000210 ! tetrapod parietal bone
intersection_of: connects UBERON:0001676 ! occipital bone
intersection_of: connects UBERON:0001678 ! temporal bone
relationship: connects UBERON:0000210 ! tetrapod parietal bone
relationship: connects UBERON:0001676 ! occipital bone
relationship: connects UBERON:0001678 ! temporal bone
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0002492
name: sagittal suture
def: "The sagittal suture is a dense, fibrous connective tissue joint between the two parietal bones of the skull. At birth, the bones of the skull do not meet. If certain bones of the skull grow too fast then 'premature closure' of the sutures may occur. This can result in skull deformities. If the sagittal suture closes early the skull becomes long, narrow, and wedge-shaped, a condition called 'scaphocephaly. ' Two anatomical landmarks are found on the sagittal suture: the bregma and the vertex of the skull. The bregma is formed by the intersection of the sagittal and coronal sutures, and the vertex is the highest point on the skull and is many times near the midpoint of the sagittal suture. The sagittal suture is also known as the 'interparietal suture' and the 'sutura interparietalis. ' The term is derived from the Latin word Sagitta, meaning 'arrow'. The derivation of this term may be demonstrated by observing how the sagittal suture is notched posteriorly, like an arrow, by the lambdoid suture. [WP,unvetted]." [Wikipedia:Sagittal_suture]
subset: uberon_slim
synonym: "sagittal suture of skull" EXACT []
synonym: "sutura sagittalis" RELATED LATIN [Wikipedia:Sagittal_suture]
xref: EMAPA:19224
xref: FMA:52929
xref: http://upload.wikimedia.org/wikipedia/commons/2/24/Kort-lang-skalle.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/24/Kort-lang-skalle.gif/200px-Kort-lang-skalle.gif
xref: MA:0002798
xref: SCTID:244511007
is_a: UBERON:0003685 ! cranial suture
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: connects UBERON:0000210 {notes="both parietals"} ! tetrapod parietal bone
relationship: connects UBERON:0000210 {cardinality="2"} ! tetrapod parietal bone
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0002493
name: uterine artery
def: "The uterine artery is an artery in females that supplies blood to the uterus. [WP,unvetted]." [Wikipedia:Uterine_artery]
subset: uberon_slim
synonym: "arteria uterina" RELATED LATIN [Wikipedia:Uterine_artery]
xref: FMA:18829
xref: http://upload.wikimedia.org/wikipedia/commons/a/ae/Gray1170.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray1170.png/200px-Gray1170.png
xref: MA:0002799
xref: SCTID:244300003
is_a: UBERON:0001637 ! artery
is_a: UBERON:0006955 ! uterine epithelium
relationship: part_of UBERON:0000995
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0000995 ! uterus
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0002494
name: papillary muscle
def: "In anatomy, the papillary muscles of the heart serve to limit the movements of the mitral and tricuspid valves. These muscles contract to tighten the chordae tendineae, which in turn prevent inversion. This occurs in response to pressure gradients. Instead they brace the valves against the high pressure, preventing regurgitation of ventricular blood back into the atrial cavities. [WP,unvetted]." [Wikipedia:Papillary_muscle]
subset: uberon_slim
synonym: "musculus papillaris" RELATED LATIN [Wikipedia:Papillary_muscle]
synonym: "papillary muscle of ventricle" EXACT [MA:0002800]
synonym: "ventricular papillary muscle" EXACT [MA:0002800]
synonym: "ventricule papillary muscle" EXACT []
xref: EHDAA:8655
xref: FMA:12154
xref: GAID:175
xref: galen:PapillaryMuscle
xref: http://upload.wikimedia.org/wikipedia/commons/8/87/Papillary_muscles.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Papillary_muscles.png/200px-Papillary_muscles.png
xref: MA:0002800
xref: MESH:A.02.633.580.680
xref: ncithesaurus:Papillary_Muscle
xref: OpenCyc:Mx4rDid0jLYYEduAAAACs2IKfQ
xref: SCTID:279329009
xref: VHOG:0001392
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0002495
name: long bone
def: "Long bone is a limb bone that is subcylindrical and has a shaft with periosteum separating the ends of the bones. Long bones are present only in the limbs[VSAO]." [VSAO:wd, Wikipedia:Long_bone]
comment: Endochondral_ossification is an essential process during the rudimentary formation of long bones, with the exception of the clavicle[Wikipedia:Endochondral_ossification]. The medial and and lateral ends undergo EO, the mid-portion is formed by a process with features of EO & IO (the process is shared by the mandible)[ISBN:9780397517251]
subset: uberon_slim
xref: BTO:0004256
xref: FMA:7474
xref: galen:LongBone
xref: MA:0002802
xref: ncithesaurus:Long_Bone
xref: OpenCyc:Mx4rv6axr5wpEbGdrcN5Y29ycA
xref: SCTID:332709000
is_a: UBERON:0001474 ! bone
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
[Term]
id: UBERON:0002496
name: stapes base
subset: uberon_slim
synonym: "base of stapes" RELATED [MA:0002804]
synonym: "footplate" RELATED []
synonym: "stapes footplate" RELATED [MA:0002804]
xref: EHDAA:5143
xref: EHDAA:6096
xref: FMA:52769
xref: MA:0002804
xref: SCTID:279685009
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001687 ! stapes
[Term]
id: UBERON:0002497
name: acromion
def: "Region of the scapula where the latter meets with the clavicle: attachment point of the clavicle to the scapula in some taxa." [VSAO:0005067, Wikipedia:Acromion]
subset: uberon_slim
synonym: "acromion of the scapula" RELATED [Wikipedia:Acromion]
synonym: "acromion process" EXACT [VSAO:0005067]
synonym: "scapular acromion" EXACT [VSAO:0005067]
xref: AAO:0000826
xref: EMAPA:25119
xref: FMA:23260
xref: GAID:187
xref: http://upload.wikimedia.org/wikipedia/commons/7/79/Gray206.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/79/Gray206.png/200px-Gray206.png
xref: MA:0002805
xref: MESH:A.02.835.232.087.783.261
xref: ncithesaurus:Acromion
xref: OpenCyc:Mx4rvmrF8pwpEbGdrcN5Y29ycA
xref: SCTID:181911000
xref: VSAO:0005067
property_value: UBPROP:0000001 "Anterior rounded projection of the pars acromialis of the scapula.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of pars acromialis (AAO:0000752)[AAO]" xsd:string
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001124 {source="FMA"} ! pectoral limb scapula
[Term]
id: UBERON:0002498
name: deltoid tuberosity of humerus
def: "The deltoid tuberosity is the region on the shaft of the humerus to which the deltoid muscle attaches. [WP,unvetted]." [Wikipedia:Deltoid_tuberosity]
subset: uberon_slim
synonym: "deltoid crest" EXACT [MP:0004353]
synonym: "deltoid eminence" EXACT [MP:0004353]
synonym: "deltoid impression" EXACT [MP:0004353]
synonym: "deltoid process" EXACT [MP:0004353]
synonym: "deltoid tuberosity" EXACT [FMA:23418]
synonym: "tuberositas deltoidea" EXACT [FMA:23418, FMA:TA]
synonym: "tuberositas deltoidea (corpus humeri)" EXACT []
synonym: "tuberositas deltoidea humeri" RELATED LATIN [Wikipedia:Deltoid_tuberosity]
xref: EMAPA:25052
xref: FMA:23418
xref: http://upload.wikimedia.org/wikipedia/commons/a/a7/HumerusFront.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/HumerusFront.png/200px-HumerusFront.png
xref: MA:0002808
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005813 ! tubercle
relationship: part_of UBERON:0004652 ! humerus diaphysis
[Term]
id: UBERON:0002499
name: cochlear labyrinth
def: "For more uses of the word labyrinth, see Labyrinth (disambiguation) The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Cochlear_labyrinth]
comment: WP - The labyrinth can be divided by layer or by region. Bony vs. membranous / Vestibular vs. cochlear
subset: uberon_slim
xref: BTO:0004686
xref: FMA:61259
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png
xref: MA:0002809
xref: ncithesaurus:Cochlear_Labyrinth
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0002500
name: zygomatic arch
def: "The zygomatic arch or cheek bone is formed by the zygomatic process of temporal bone (a bone extending forward from the side of the skull, over the opening of the ear) and the temporal process of the zygomatic bone (the side of the cheekbone), the two being united by an oblique suture; the tendon of the Temporalis passes medial to the arch to gain insertion into the coronoid process of the mandible. The term zygomatic derives from the Latin zyosislymore meaning malar bone or cheekbone. The zygomatic arch is occasionally referred to as the zygoma, but this term usually refers to the zygomatic bone or occasionally the zygomatic process. The zygomatic process of the temporal arises by two roots: an anterior, directed inward in front of the mandibular fossa, where it expands to form the articular tubercle. a posterior, which runs backward above the external acoustic meatus and is continuous with the supramastoid crest. The upper border of the arch gives attachment to the temporal fascia; the lower border and medial surface give origin to the Masseter. The zygomatic arch is significant in evolutionary biology, as it is part of the structures derived from the ancestral single temporal fenestra of the synapsid ancestor of mammals. [WP,unvetted]." [Wikipedia:Zygomatic_arch]
comment: Editors note: compare with zygomatic bone
subset: uberon_slim
synonym: "arcus zygomaticus" RELATED LATIN [Wikipedia:Zygomatic_arch]
synonym: "zygoma" EXACT []
xref: FMA:53120
xref: galen:Zygoma
xref: http://upload.wikimedia.org/wikipedia/commons/f/f4/Gray188-Sphenozygomatic_suture.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Gray188-Sphenozygomatic_suture.png/200px-Gray188-Sphenozygomatic_suture.png
xref: MA:0002810
xref: MESH:A.02.835.232.781.324.995
xref: ncithesaurus:Zygomatic_Arch
xref: OpenCyc:Mx4rvih1YZwpEbGdrcN5Y29ycA
xref: SCTID:272682006
is_a: UBERON:0011164 {source="MA"} ! neurocranium bone
[Term]
id: UBERON:0002501
name: oval window
def: "The oval window (or vestibular window) is a membrane-covered opening which leads from the middle ear to the vestibule of the inner ear. Vibrations that come into contact with the tympanic membrane travel through the three ossicles and into the inner ear. The oval window is the intersection of the middle ear with the inner ear, and is directly contacted by the stapes; by the time vibrations reach the oval window, they have been amplified over twenty times from what they were when they contacted the tympanic membrane, a testament to the amplifying power of the middle ear. It is a reniform (kidney-shaped) opening leading from the tympanic cavity into the vestibule of the internal ear; its long diameter is horizontal, and its convex border is upward. In the recent state it is occupied by the base of the stapes, the circumference of which is fixed by the annular ligament to the margin of the foramen. [WP,unvetted]." [Wikipedia:Oval_window]
subset: uberon_slim
synonym: "fenestra ovalis" RELATED LATIN [Wikipedia:Oval_window]
synonym: "fenestra vestibuli" RELATED LATIN [Wikipedia:Oval_window]
synonym: "oval window of petrous part of temporal bone" EXACT []
synonym: "vestibular window" RELATED [MA:0002813]
xref: FMA:56913
xref: GAID:882
xref: http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray911.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9d/Gray911.png/200px-Gray911.png
xref: MA:0002813
xref: MESH:A.09.246.631.909.551
xref: SCTID:362561009
is_a: UBERON:0000161 ! orifice
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
relationship: part_of UBERON:0001694 ! petrous part of temporal bone
[Term]
id: UBERON:0002502
name: round window
def: "The round window is one of the two openings into the cochlea of the inner ear. It is closed off from the middle ear by the round window membrane, which vibrates with opposite phase to vibrations entering the cochlea through the oval window. It allows fluid in the cochlea to move, which in turn ensures that hair cells of the basilar membrane will be stimulated and that audition will occur. [WP,unvetted]." [Wikipedia:Round_window]
subset: uberon_slim
synonym: "cochlear window" RELATED [MA:0002814]
synonym: "fenestra cochleae" RELATED LATIN [Wikipedia:Round_window]
synonym: "fenestra rotunda" RELATED LATIN [Wikipedia:Round_window]
synonym: "round window of petrous part of temporal bone" EXACT []
xref: FMA:56932
xref: GAID:878
xref: http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray911.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9d/Gray911.png/200px-Gray911.png
xref: MA:0002814
xref: MESH:A.09.246.631.246.814
xref: SCTID:279785002
is_a: UBERON:0000161 ! orifice
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
relationship: part_of UBERON:0001694 ! petrous part of temporal bone
[Term]
id: UBERON:0002503
name: greater trochanter
def: "The greater trochanter (great trochanter) of the femur is a large, irregular, quadrilateral eminence and a part of the skeletal system. It is directed a little lateralward and backward, and, in the adult, is about 1 cm lower than the head. Because the pelvic outlet in the female is larger than in the male, there is a greater distance between the greater trochanters in the female. It has two surfaces and four borders. [WP,unvetted]." [Wikipedia:Greater_trochanter]
subset: uberon_slim
synonym: "great trochanter" EXACT []
synonym: "greater trochanter of femur" EXACT []
synonym: "trochanter major" RELATED LATIN [Wikipedia:Greater_trochanter]
xref: FMA:32852
xref: galen:GreaterTrochanter
xref: http://upload.wikimedia.org/wikipedia/commons/9/97/Gray243.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray243.png/200px-Gray243.png
xref: MA:0002822
xref: ncithesaurus:Great_Trochanter
xref: SCTID:182050001
is_a: UBERON:0000980 ! trochanter
relationship: part_of UBERON:0004412 {source="FMA"} ! proximal epiphysis of femur
[Term]
id: UBERON:0002504
name: lesser trochanter
def: "The lesser trochanter (small trochanter) of the femur is a conical eminence, which varies in size in different subjects [WP,unvetted]." [Wikipedia:Lesser_trochanter]
subset: uberon_slim
synonym: "lesser trochanter of femur" EXACT []
synonym: "trochanter minor" RELATED LATIN [Wikipedia:Lesser_trochanter]
xref: FMA:32853
xref: galen:LesserTrochanter
xref: http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray341.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray341.png/200px-Gray341.png
xref: MA:0002823
xref: ncithesaurus:Lesser_Trochanter
xref: SCTID:182051002
is_a: UBERON:0000980 ! trochanter
relationship: part_of UBERON:0004412 {source="FMA"} ! proximal epiphysis of femur
[Term]
id: UBERON:0002505
name: spiral modiolar artery
def: "the artery which parallels the spiral ganglion in the root of the spiral lamina of the modiolus, serving the ganglion and the cochlear duct and its contents." [MP:0004629]
xref: FMA:52312
xref: MA:0002824
xref: SCTID:149380004
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002506
name: iris epithelium
def: "An epithelium that is part of a iris [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of iris" EXACT [OBOL:automatic]
synonym: "epithelium of iris" EXACT [OBOL:automatic]
synonym: "epithelium pigmentosum (iris)" EXACT []
synonym: "epithelium pigmentosum (iris)" EXACT [FMA:58517]
synonym: "epithelium pigmentosum iridis" EXACT [FMA:58517, FMA:TA]
synonym: "iris epithelial tissue" EXACT [OBOL:automatic]
synonym: "iris epithelium" EXACT [FMA:58517]
synonym: "iris pigmented epithelium" RELATED [MA:0002826]
synonym: "pigmented epithelium of iris" EXACT [FMA:58517]
synonym: "pigmented epithelium of iris" EXACT []
xref: FMA:58517
xref: MA:0002826
is_a: UBERON:0000488 {source="FMA"} ! atypical epithelium
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001769
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0001769 {source="MA"} ! iris
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0002507
name: abdominal lymph node
def: "A lymph node that is part of an abdomen [Obol]." [OBOL:automatic]
synonym: "abdomen lymph node" EXACT [OBOL:automatic]
synonym: "lymph node of abdomen" EXACT []
xref: FMA:12787
xref: MA:0002827
xref: SCTID:245342005
is_a: UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000916
intersection_of: UBERON:0000029 ! lymph node
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0002508
name: celiac lymph node
def: "The visceral glands are associated with the branches of the celiac, superior and inferior mesenteric arteries. Those related to the branches of the celiac artery (the celiac lymph nodes) form three sets, gastric, hepatic, and pancreaticolienal. gastric lymph nodes hepatic lymph nodes splenic lymph nodes [WP,unvetted]." [Wikipedia:Celiac_lymph_node]
subset: uberon_slim
synonym: "celiac node" EXACT []
synonym: "coeliac node" EXACT []
synonym: "nodus lymphaticus coeliacus" EXACT []
synonym: "terminal ventral aortic node" EXACT []
xref: FMA:12792
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Gray613.png/200px-Gray613.png
xref: MA:0002828
xref: ncithesaurus:Celiac_Lymph_Node
xref: SCTID:245343000
is_a: UBERON:0002507 ! abdominal lymph node
[Term]
id: UBERON:0002509
name: mesenteric lymph node
def: "the lymph nodes located in the mesentery, of which there are 3 classes: ileocolic, juxtaintestinal mesenteric, and central superior group." [MP:0005232]
synonym: "mesenteric node" EXACT []
synonym: "nodi lymphoidei mesenterici" RELATED [BTO:0000767]
xref: BTO:0000767
xref: FMA:12795
xref: MA:0002829
xref: ncithesaurus:Mesenteric_Lymph_Node
is_a: UBERON:0002507 ! abdominal lymph node
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002095
intersection_of: UBERON:0002507 ! abdominal lymph node
intersection_of: part_of UBERON:0002095 ! mesentery
relationship: part_of UBERON:0002095 ! mesentery
[Term]
id: UBERON:0002510
name: anterior fontanel
def: "In humans, the anterior fontanelle (bregmatic fontanelle, frontal fontanelle) is the largest, and is placed at the junction of the sagittal suture, coronal suture, and frontal suture; it is lozenge-shaped, and measures about 4 cm in its antero-posterior and 2.5 cm in its transverse diameter. The fontanelle allows the skull to deform during birth to ease its passage through the birth canal and for expansion of the brain after birth. While the posterior and lateral fontanelles are obliterated by about six months after birth, the anterior is not completely closed until about the middle of the second year. Full ossification starts in the late twenties and finishes before the age of 50 . [WP,unvetted]." [Wikipedia:Anterior_fontanelle]
comment: AO notes TAO:0001739 anterior cranial fontanel is 'Fontanel that is located between the contralateral frontals and anterior to the epiphyseal bar'
synonym: "anterior fontanelle" EXACT [FMA:75439]
synonym: "fonticulus anterior" RELATED LATIN [Wikipedia:Anterior_fontanelle]
xref: EMAPA:19199
xref: FMA:75439
xref: http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray197.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray197.png/200px-Gray197.png
xref: MA:0002830
xref: SCTID:244680006
is_a: UBERON:0002221 ! fontanelle
relationship: connects UBERON:0002489
relationship: connects UBERON:0002490
relationship: connects UBERON:0002492
intersection_of: UBERON:0002221 ! fontanelle
intersection_of: connects UBERON:0002489 ! coronal suture
intersection_of: connects UBERON:0002490 ! frontal suture
intersection_of: connects UBERON:0002492 ! sagittal suture
relationship: connects UBERON:0002489 ! coronal suture
relationship: connects UBERON:0002490 ! frontal suture
relationship: connects UBERON:0002492 ! sagittal suture
[Term]
id: UBERON:0002511
name: trabecula carnea
def: "The trabeculae carneae (columnae carneae, or fleshy beams), are rounded or irregular muscular columns which project from the inner surface of the right and left ventricles of the heart.[1] They should not be confused with the pectinate muscles, which are present in the right[1] and left atria only. They are of three kinds: * some are attached along their entire length on one side and merely form prominent ridges,* others are fixed at their extremities but free in the middle, * while a third set, the papillary muscles are continuous by their bases with the wall of the ventricle, while their apices give origin to the chordæ tendineæ which pass to be attached to the segments of both the mitral valve and the tricuspid valve. The purpose of the trabeculae carneae is most likely to prevent suction that would occur with a flat surfaced membrane and thus impair the heart's ability to pump efficiently. The trabeculae carneae also serve a similar function to papillary muscles in that their contraction pulls on the chordae tendineae, preventing inversion of the mitral (bicuspid) and tricuspid valves, that is, their bulging towards the atrial chambers, which would lead to subsequent leakage of the blood into the atria. So by the action of papillary muscles on the atrioventricular valves, backflow of the blood from the ventricles into the atria is prevented[WP]." [Wikipedia:Trabeculae_carneae]
comment: Note that WP states they are ventricular, but MP has classes for atrial ventricular carnea.
synonym: "cardiac trabecula" RELATED [GO:0060347]
synonym: "heart trabecula" RELATED [GO:0060347]
synonym: "trabecula of heart" RELATED []
synonym: "trabeculae carneae cordis" RELATED LATIN [Wikipedia:Trabeculae_carneae]
synonym: "ventricle trabecula carnea" EXACT [MA:0002831]
synonym: "ventricular trabecula" RELATED [MA:0002831]
xref: EMAPA:18626
xref: FMA:7269
xref: MA:0002831
xref: SCTID:118755002
is_a: UBERON:0000440 ! trabecula
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002512
name: corpus luteum
def: "a transient endocrine gland that develops from the postovulatory or atretic follicles and secretes progesterone; it is thought to be related to egg retention[PMID]." [PMID:20959416, Wikipedia:Corpus_luteum]
comment: Taxon notes: maintains the endometrium in mammals[WP]. A corpus luteum is known in hagfish (100), Squalus (101), and salamander (100) but not lamprey (102). There are no data for Branchiostoma and Ciona, and given that they are multiple spawners, there is no a priori reason to conclude that they lack a corpus luteum[PMID:20959416]
subset: uberon_slim
synonym: "corpora lutea" EXACT PLURAL []
synonym: "corpus luteum of ovary" EXACT []
synonym: "luteal gland" RELATED [BTO:0000292]
xref: BTO:0000292
xref: EMAPA:29886
xref: FMA:18619
xref: GAID:369
xref: http://upload.wikimedia.org/wikipedia/commons/5/57/Folliclesinovary.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Folliclesinovary.jpg/200px-Folliclesinovary.jpg
xref: MA:0002834
xref: MESH:A.05.360.319.114.630.278
xref: ncithesaurus:Corpus_Luteum
xref: SCTID:257943001
property_value: "present_in_taxon" NCBITaxon:71164
is_a: UBERON:0002368 {source="PMID:20959416"} ! endocrine gland
is_a: UBERON:0005398 ! female reproductive gland
relationship: develops_from UBERON:0001305 ! ovarian follicle
relationship: part_of UBERON:0000949 {source="MA"} ! endocrine system
relationship: part_of UBERON:0000992 {source="MA"} ! female gonad
[Term]
id: UBERON:0002513
name: endochondral bone
def: "Replacement bone that forms within cartilage[TAO]. Endochondral ossification is the formation of bone by the replacement of cartilage tissue with mineralized bone[GO]. cartilage is present during endochondral ossification. It is also an essential process during the rudimentary formation of long bones, the growth of the length of long bones, and the natural healing of bone fractures[WP]." [GO:0001958, Wikipedia:Endochondral_ossification]
comment: note that some structures, e.g. in ZFA are both intramembrane and endochondral. Editor notes: placement in this class to be inferred
subset: uberon_slim
subset: vertebrate_core
synonym: "cartilaginous bone" RELATED [BTO:0002157]
xref: AAO:0010776
xref: AEO:0000083
xref: BTO:0002157
xref: EHDAA2:0003083
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg
xref: TAO:0001591
xref: VSAO:0000145
xref: XAO:0004018
xref: ZFA:0001591
property_value: UBPROP:0000001 "Replacement bone that forms within cartilage.[AAO]" xsd:string
property_value: UBPROP:0000001 "Replacement bone that forms within cartilage.[TAO]" xsd:string
property_value: UBPROP:0000001 "Replacement bone that forms within cartilage.[VSAO]" xsd:string
is_a: UBERON:0001474 ! bone
is_a: UBERON:0010363 {source="VSAO"} ! endochondral element
relationship: develops_from UBERON:0005863
intersection_of: UBERON:0001474 ! bone
intersection_of: develops_from UBERON:0005863 ! cartilaginous condensation
relationship: developmentally_replaces UBERON:0002418 ! cartilage tissue
relationship: develops_from UBERON:0005863 ! cartilaginous condensation
relationship: develops_from UBERON:0007844 {source="VSAO"} ! cartilaginous element
[Term]
id: UBERON:0002514
name: intramembranous bone
def: "Bone tissue forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, Wikipedia:Intramembranous_ossification]
synonym: "membrane bone" RELATED [AEO:0000085]
xref: TAO:0001644
xref: ZFA:0001635
property_value: UBPROP:0000001 "Bone that forms directly within mesenchyme, and does not replace other tissues.[TAO]" xsd:string
is_a: UBERON:0001474 ! bone
relationship: develops_from UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0002515
name: periosteum
def: "Periosteum is a membrane that lines the outer surface of all bones, except at the joints of long bones. Endosteum lines the inner surface of all bones. Periosteum consists of dense irregular connective tissue. Periosteum is divided into an outer 'fibrous layer' and inner 'cambium layer' (or 'osteogenic layer'). The fibrous layer contains fibroblasts, while the cambium layer contains progenitor cells that develop into osteoblasts. These osteoblasts are responsible for increasing the width of a long bone and the overall size of the other bone types. After a bone fracture the progenitor cells develop into osteoblasts and chondroblasts, which are essential to the healing process. As opposed to osseous tissue, periosteum has nociceptors nerve endings, making it very sensitive to manipulation. It also provides nourishment by providing the blood supply. Periosteum is attached to bone by strong collagenous fibers called Sharpey's fibres, which extend to the outer circumferential and interstitial lamellae. It also provides an attachment for muscles and tendons. Periosteum that covers the outer surface of the bones of the skull is known as 'pericranium'. [WP,unvetted]." [Wikipedia:Periosteum]
subset: uberon_slim
xref: BTO:0001022
xref: FMA:24041
xref: GAID:925
xref: galen:PeriOsteum
xref: http://upload.wikimedia.org/wikipedia/commons/c/cf/Bone_growth.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Bone_growth.png/200px-Bone_growth.png
xref: MA:0002838
xref: MESH:A.10.165.265.746
xref: ncithesaurus:Periosteum
xref: SCTID:33840008
is_a: UBERON:0000158 ! membranous layer
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0002516
name: epiphyseal plate
def: "a hyaline cartilage plate in the metaphysis at each end of a long bone. The plate is found in children and adolescents; in adults, who have stopped growing, the plate is replaced by an epiphyseal line." [Wikipedia:Epiphyseal_plate]
comment: editor note: consider splitting this class into the epiphyseal plates of long bones and vertebrae
subset: uberon_slim
synonym: "cartilago epiphysialis" RELATED [BTO:0000412]
synonym: "epiphyseal cartilage" RELATED []
synonym: "epiphyseal disk" RELATED [BTO:0000412]
synonym: "epiphyseal growth disk" RELATED [BTO:0000412]
synonym: "epiphyseal growth plate" EXACT []
synonym: "epiphyseal growth plate cartilage" EXACT []
synonym: "epiphysial plate" EXACT [FMA:75427]
synonym: "growth plate" RELATED [MA:0002839]
synonym: "lamina epiphysialis" RELATED LATIN [Wikipedia:Epiphyseal_plate]
synonym: "long bone epiphyseal plate" EXACT [MA:0002839]
synonym: "physis" RELATED [BTO:0000412]
xref: BTO:0000412
xref: EMAPA:25059
xref: EMAPA:25062
xref: EMAPA:25065
xref: EMAPA:25068
xref: EMAPA:25071
xref: FMA:75427
xref: GAID:191
xref: http://upload.wikimedia.org/wikipedia/commons/7/7a/Tib_fib_growth_plates.jpg
xref: MA:0002839
xref: MESH:A.02.835.232.251.352
xref: SCTID:84349008
is_a: UBERON:0001994 ! hyaline cartilage
relationship: part_of UBERON:0001438 ! metaphysis
[Term]
id: UBERON:0002517
name: basicranium
def: "The base of skull is the most inferior area of the skull, composed of the endocranium and lower parts of the skull roof." [Wikipedia:Base_of_skull]
comment: The skull base is formed from a series of cartilages either side of, and rostral to, the notochord, whose tip lies just caudal to the pituitary gland. It is closely associated with the sensory capsules, which partially or completely sur- round the olfactory epithelium, the eye, and the inner ear[PMID:11523816]
subset: uberon_slim
synonym: "base of skull" EXACT []
synonym: "basis cranii" EXACT [FMA:52801, FMA:TA]
synonym: "basis cranii" RELATED LATIN [Wikipedia:Base_of_skull]
synonym: "cranial base" RELATED [MA:0002840]
synonym: "skull base" EXACT []
xref: FMA:52801
xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray193.png/200px-Gray193.png
xref: MA:0002840
xref: MESH:A.01.456.830
xref: ncithesaurus:Base_of_the_Skull
xref: SCTID:181890004
is_a: UBERON:0000075 ! subdivision of skeletal system
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0002518
name: otolith organ
def: "saccule or utricle." [Wikipedia:Otolith_organ]
subset: organ_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "otolith organs" RELATED [ZFA:0000559]
xref: EFO:0003539
xref: GAID:883
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg
xref: MA:0002841
xref: TAO:0000559
xref: VHOG:0001676
xref: ZFA:0000559
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003051 ! ear vesicle
relationship: part_of UBERON:0001862 ! vestibular labyrinth
[Term]
id: UBERON:0002519
name: otolithic membrane
def: "a gelatinous membrane located in the vestibular apparatus of the inner ear, and plays an essential role in the brain's interpretation of equilibrium. Both the saccular macula and utricular macula are covered by an otolithic membrane. The membrane is composed of crystalline particles of calcium carbonate called otoliths. When the head is moved the otoliths shift, causing cilia in the nearby saccule and utricle to distort. This produces nerve signals which are sent to the brain, which then uses them to establish its sense of balance. The embedded crystals are very and dense and make the density of the otolithic membrane higher than that of the endolymph surrounding it. When the head accelerates along a line or tilts to change its orientation to gravity, the otolithic membrane shifts relative to the bone supporting the maculae. This shift bends the hair cells whose processes are embedded in the otolithic membrane.[WP]." [Wikipedia:Otolithic_membrane]
subset: uberon_slim
synonym: "membrana statoconiorum" EXACT [FMA:75573, FMA:TA]
synonym: "otolith layer of statoconial membrane" EXACT [FMA:75573]
xref: FMA:75573
xref: GAID:884
xref: MA:0002842
xref: MESH:A.09.246.631.909.625.125.680
xref: SCTID:362571006
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001862 ! vestibular labyrinth
relationship: surrounds UBERON:0000054 ! macula
[Term]
id: UBERON:0002520
name: submandibular lymph node
def: "The submandibular lymph nodes (submaxillary glands in older texts), three to six in number, are placed beneath the body of the mandible in the submaxillary triangle, and rest on the superficial surface of the submaxillary salivary gland. One gland, the middle gland of Stahr, which lies on the external maxillary artery as it turns over the mandible, is the most constant of the series; small lymph glands are sometimes found on the deep surface of the submaxillary salivary glands. The afferents of the submaxillary glands drain the medial palpebral commissure, the cheek, the side of the nose, the upper lip, the lateral part of the lower lip, the gums, and the anterior part of the margin of the tongue. Efferent vessels from the facial and submental glands also enter the submaxillary glands. Their efferent vessels pass to the superior deep cervical glands. [WP,unvetted]." [Wikipedia:Submandibular_lymph_node]
subset: uberon_slim
synonym: "level ib neck node" EXACT []
synonym: "nodi lymphoidei submandibulares" RELATED [BTO:0000769]
synonym: "submandibular node" EXACT []
xref: BTO:0000769
xref: FMA:61224
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4e/Illu_quiz_hn_03.jpg/200px-Illu_quiz_hn_03.jpg
xref: MA:0002843
xref: ncithesaurus:Submandibular_Lymph_Node
xref: SCTID:245319003
is_a: UBERON:0003968 ! peripheral lymph node
[Term]
id: UBERON:0002521
name: elastic tissue
def: "Elastic fibers (or yellow fibers) are bundles of proteins found in extracellular matrix of connective tissue and produced by fibroblasts and smooth muscle cells in arteries. These fibers can stretch up to 1.5 times their length, and snap back to their original length when relaxed. Elastic fibers include elastin, elaunin and oxytalan. Elastic tissue is classified as 'connective tissue proper'. The elastic fiber is formed from the elastic microfibril and amorphous elastin. The microfibril scaffolds and organizes the deposition of amorphous elastin. Amorphous elastin forms from monomers of soluble tropoelastin which is insolubilized and crosslinked into amorphous elastin by lysyl oxidase. Lysyl oxidase reacts with specific lysine residues and by oxidative deamination generates reactive aldehydes and allysine. These reactive aldehydes and allysines can react with lysine and other allysine residues to crosslink and form desmosine, isodesmosine, and a number of other polyfunctional crosslinks that join surrounding elastin molecules to build an elastin matrix and elastic fiber. These unique crosslinks are responsible for elastin's elasticity. [WP,unvetted]." [Wikipedia:Elastic_fiber]
subset: uberon_slim
synonym: "elastic connective tissue" EXACT []
synonym: "textus connectivus elasticus" EXACT []
xref: FMA:20113
xref: GAID:926
xref: http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray377.png
xref: MA:0002853
xref: MESH:A.10.165.400
xref: SCTID:27197004
is_a: UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0002522
name: tunica media
def: "The tunica media (or just media) (middle coat) is the middle layer of an artery or vein. [WP,unvetted]." [Wikipedia:Tunica_media]
comment: todo - check BTO
subset: uberon_slim
synonym: "tunica media vasorum" RELATED LATIN [Wikipedia:Tunica_media]
synonym: "tunica media vasorum" RELATED [BTO:0002011]
xref: BTO:0002011
xref: FMA:55590
xref: GAID:170
xref: http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_artery.jpg/200px-Illu_artery.jpg
xref: MA:0002855
xref: MESH:A.02.633.570.491.800
xref: ncithesaurus:Tunica_Media
xref: SCTID:61695000
is_a: UBERON:0004237 {source="ncithesaurus"} ! blood vessel smooth muscle
is_a: UBERON:0004797 {source="MA"} ! blood vessel layer
relationship: surrounded_by UBERON:0005734 ! tunica adventitia
[Term]
id: UBERON:0002523
name: tunica intima
def: "The tunica intima (or just intima) is the innermost layer of an artery or vein. It is made up of one layer of endothelial cells and is supported by an internal elastic lamina. The endothelial cells are in direct contact with the blood flow. The inner coat (tunica intima) can be separated from the middle by a little maceration, or it may be stripped off in small pieces; but, on account of its friability, it cannot be separated as a complete membrane. It is a fine, transparent, colorless structure which is highly elastic, and, after death, is commonly corrugated into longitudinal wrinkles. The inner coat consists of: A layer of pavement endothelium, the cells of which are polygonal, oval, or fusiform, and have very distinct round or oval nuclei. This endothelium is brought into view most distinctly by staining with silver nitrate. A subendothelial layer, consisting of delicate connective tissue with branched cells lying in the interspaces of the tissue; in arteries of less than 2 mm. in diameter the subendothelial layer consists of a single stratum of stellate cells, and the connective tissue is only largely developed in vessels of a considerable size. An elastic or fenestrated layer, which consists of a membrane containing a net-work of elastic fibers, having principally a longitudinal direction, and in which, under the microscope, small elongated apertures or perforations may be seen, giving it a fenestrated appearance. It was therefore called by Henle the fenestrated membrane. This membrane forms the chief thickness of the inner coat, and can be separated into several layers, some of which present the appearance of a network of longitudinal elastic fibers, and others a more membranous character, marked by pale lines having a longitudinal direction. In minute arteries the fenestrated membrane is a very thin layer; but in the larger arteries, and especially in the aorta, it has a very considerable thickness. [WP,unvetted]." [Wikipedia:Tunica_intima]
comment: todo - check BTO
subset: uberon_slim
synonym: "tunica intima vasorum" RELATED [BTO:0002012]
xref: BTO:0002012
xref: FMA:55589
xref: GAID:523
xref: http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_artery.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_artery.jpg/200px-Illu_artery.jpg
xref: MA:0002861
xref: MESH:A.07.231.330.800
xref: ncithesaurus:Tunica_Intima
xref: SCTID:8361002
is_a: UBERON:0004797 {source="MA"} ! blood vessel layer
disjoint_from: UBERON:0005738 ! swim bladder tunica interna
relationship: surrounded_by UBERON:0002522 ! tunica media
[Term]
id: UBERON:0002524
name: mediastinal lymph node
def: "A lymph node that is part of a mediastinum. Each consists of several lymph node groups, especially along the trachea (5 groups), along the esophagus and between the lung and the diaphragm. In the mediastinal lymph nodes arises lymphatic ducts, which draines the lymph to the left subclavian vein (to the venous angle in the confluence of the subclavian and deep jugular veins). The mediastinal lymph nodes along the esophagus are in tight connection with the abdominal lymph nodes along the esophagus and the stomach. That fact facilitates spreading of tumors cells through these lymphatics in cases of cancers of the stomach and particularly of the esophagus. Through the mediastinum, the main lymphatic drainage from the abdominal organs goes via the thoracic duct (ductus thoracicus), which drains majority of the lymph from the abdomen to the above mentioned left venous angle." [Obol:automatic, Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax]
synonym: "mediastinal node" EXACT []
xref: EFO:0001670
xref: FMA:12774
xref: MA:0002877
xref: ncithesaurus:Mediastinal_Lymph_Node
xref: SCTID:181760002
is_a: UBERON:0007644 {source="FMA"} ! thoracic lymph node
relationship: part_of UBERON:0003728 ! mediastinum
[Term]
id: UBERON:0002525
name: brachial lymph node
def: "the lymph nodes located along the brachial vein that receive drainage from most of the free upper limb and send efferent vessels to the central axillary lymph nodes." [MP:0005231, Wikipedia:Brachial_lymph_nodes]
synonym: "nodi lymphoidei brachiales" RELATED LATIN [Wikipedia:Brachial_lymph_nodes]
xref: FMA:44314
xref: http://upload.wikimedia.org/wikipedia/commons/7/73/Gray607.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray607.png/200px-Gray607.png
xref: MA:0002878
xref: ncithesaurus:Brachial_Lymph_Node
is_a: UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002526
name: lumbar lymph node
xref: FMA:84599
xref: MA:0002879
xref: SCTID:281412000
is_a: UBERON:0002507 ! abdominal lymph node
[Term]
id: UBERON:0002527
name: pancreatic lymph node
def: "A lymph node that is part of a pancreas [Obol]." [OBOL:automatic]
synonym: "lymph node of pancreas" EXACT [OBOL:automatic]
synonym: "pancreas lymph node" EXACT [OBOL:automatic]
synonym: "pancreatic node" EXACT []
synonym: "pyloric lymph node" RELATED [MA:0002881]
xref: FMA:16626
xref: MA:0002881
xref: ncithesaurus:Pancreatic_Lymph_Node
xref: SCTID:276170003
is_a: UBERON:0002507 ! abdominal lymph node
relationship: part_of UBERON:0001264
intersection_of: UBERON:0000029 ! lymph node
intersection_of: part_of UBERON:0001264 ! pancreas
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0002528
name: sacral lymph node
synonym: "sacral node" EXACT []
xref: FMA:16655
xref: MA:0002883
xref: ncithesaurus:Sacral_Lymph_Node
xref: SCTID:279797001
is_a: UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002529
name: limb segment
def: "A major subdivision of a mature or developing limb, including both skeletal elements (or the mesenchyme that gives rise to the skeletal elements) and associated tissues, such as muscle, connective tissue, integument. Examples: autopod region, zeugopod region, stylopod region, metapodial region, arm region. Excludes the limb girdles." [UBERON:cjm]
comment: note FMA has both limb segment and free limb segment, the former includes the girdles. Note that MA uses the term more generally and includes A,S,Z,S+Z(arm/leg), whereas FMA is just A,S,Z
synonym: "free limb segment" EXACT [FMA:241863]
synonym: "limb region" EXACT []
synonym: "region of limb" EXACT []
synonym: "segment of limb" EXACT []
synonym: "subdivision of limb" EXACT []
xref: FMA:241863
xref: MA:0002889
is_a: UBERON:0010538 ! limb/fin segment
relationship: part_of UBERON:0002101
intersection_of: UBERON:0010758 ! appendage segment
intersection_of: part_of UBERON:0002101 ! limb
disjoint_from: UBERON:0010912 ! subdivision of skeleton
relationship: existence_ends_during UBERON:0000066 ! fully formed stage
relationship: existence_starts_during UBERON:0000068 ! embryo stage
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0002530
name: gland
alt_id: UBERON:MIAA_0000021
def: "A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]." [Wikipedia:Gland]
subset: uberon_slim
synonym: "Druese" RELATED [BTO:0000522]
synonym: "glandula" RELATED LATIN [Wikipedia:Gland]
synonym: "glandula" RELATED [BTO:0000522]
xref: AAO:0000212
xref: AEO:0000096
xref: BTO:0000522
xref: EFO:0000797
xref: EHDAA2:0003096
xref: EHDAA:2161
xref: EHDAA:2181
xref: EHDAA:2967
xref: EHDAA:4475
xref: EHDAA:6522
xref: EMAPA:18425
xref: FMA:86294
xref: galen:Gland
xref: HAO:0000375
xref: http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray1026.png
xref: MAT:0000021
xref: MIAA:0000021
xref: ncithesaurus:Gland
xref: OpenCyc:Mx4rwP3vyJwpEbGdrcN5Y29ycA
xref: SCTID:134358001
is_a: UBERON:0000062 ! organ
relationship: secretes UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0002531
name: fin bud
def: "the mesenchymal outgrowth on the lateral trunk of the embryo that develops into a paired fin[MP, modified]." [UBERON:cjm]
xref: EFO:0003468
xref: MAT:0000062
xref: MIAA:0000062
xref: TAO:0001383
xref: VSAO:0000179
xref: ZFA:0001383
property_value: RO:0002161 NCBITaxon:8782
is_a: UBERON:0004357 ! limb/fin bud
relationship: develops_from UBERON:0005731 {evidence="definitional"} ! fin field
[Term]
id: UBERON:0002532
name: epiblast
def: "In amniote animal embryology, the epiblast is a tissue type derived either from the inner cell mass in mammals or the blastodisc in birds and reptiles. It lies above the hypoblast. In mammalian embryogenesis, the columnar cells of the epiblast are adjacent to the trophoblast, while the cuboidal cells of the hypoblast are closer to the blastocoele. The epiblast, whilst referred to as the primary ectoderm, differentiates to form all three layers of the trilaminar germ disc in a process called gastrulation[WP]. The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation[ZFA]" [Wikipedia:Epiblast, ZFIN:curator]
comment: MP says - tissue that gives rise to the ectoderm, endoderm and mesoderm of the embryo proper. In HOG, epiblast is part of primitive streak/blastpore, which is inconsistent with the MP definition of primitive streak as a ridge of the epiblast. Note that these terms, epiblast and hypoblast, are also used to describe layers of the avian embryonic blastoderm, but the layers so-named seem to be altogether different in these two kinds of vertebrate embryos(CVS). Consider obsoleting this as a grouping class
subset: early_development
subset: grouping_class
subset: uberon_slim
subset: vertebrate_core
synonym: "blastocyst" RELATED []
synonym: "ectoblast" RELATED [MP:0003886]
synonym: "epiblastus" RELATED LATIN [Wikipedia:Epiblast]
synonym: "primitive ectoderm" RELATED [VHOG:0000243]
xref: BTO:0004593
xref: http://upload.wikimedia.org/wikipedia/commons/e/e3/Gray21.png
xref: MAT:0000067
xref: MIAA:0000067
xref: VHOG:0000243
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0002533
name: tail bud
def: "The rapidly proliferating mass of cells at the caudal extremity of the embryo; remnant of the primitive node." [BTO:0001445]
comment: Editor notes: See notes from UBERONREF:0000002
subset: uberon_slim
subset: vertebrate_core
synonym: "end bud" RELATED [BTO:0001445]
synonym: "tail bud mesenchyme " RELATED [ZFA:0000077]
synonym: "tailbud" EXACT []
xref: AAO:0011104
xref: BTO:0001445
xref: EFO:0002748
xref: EHDAA2:0001976
xref: EHDAA:1595
xref: EMAPA:16580
xref: MAT:0000070
xref: MIAA:0000070
xref: TAO:0000077
xref: VHOG:0000201
xref: XAO:0000107
xref: ZFA:0000077
property_value: UBPROP:0000001 "Rapidly proliferating mass of cells at the caudal extremity of the embryo. Its formation is reflected in a caudal carving of the posterior portion of the archenteric canal at NF stage 22. With its further outgrowth, the postanal gut primordium becomes stretched. Its lumen is in broad communication with the hindgut at NF stage 25.[AAO]" xsd:string
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0002534
name: paired fin
def: "Fin that is one of a pair located ventrally on the organism." [TAO:wd]
subset: uberon_slim
synonym: "pelvic/pectoral fin" EXACT [UBERON:cjm]
xref: TAO:0002278
xref: VSAO:0000111
xref: ZFA:0005596
property_value: RO:0002161 NCBITaxon:32523
is_a: UBERON:0004708 ! limb/fin
is_a: UBERON:0008897 {source="ZFA"} ! fin
relationship: develops_from UBERON:0002531 {source="ZFA"} ! fin bud
[Term]
id: UBERON:0002535
name: gill
def: "Anatomical surface structure found in many aquatic organisms. It is a respiration organ whose function is the extraction of oxygen from water and the excretion of carbon dioxide. The microscopic structure of a gill is such that it presents a very large surface area to the external environment. Gills usually consist of thin filaments of tissue, branches, or slender tufted processes which have a highly folded surface to increase surface area. A high surface area is crucial to the gas exchange of aquatic organisms as water contains only 1/20 parts dissolved Oxygen compared to air. With the exception of some aquatic insects, the filaments and lamellae (folds) contain blood or coelomic fluid, from which gases are exchanged through the thin walls. Oxygen is carried by the blood to other parts of the body. Carbon dioxide passes from the blood through the thin gill tissue into the water. Gills or gill-like organs, located in different parts of the body, are found in various groups of aquatic animals, including mollusks, crustaceans, insects, fish, and amphibians." [Wikipedia:Gill]
comment: this term potentially applicable across multiple metazoa - see also the subclass 'pharyngeal arch derived gill'
subset: functional_classification
xref: MESH:A.13.421
is_a: UBERON:0003102 ! surface structure
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0002536
name: arthropod sensillum
def: "Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt]" [FBbt:00007152, Wikipedia:Sensillum]
subset: uberon_slim
synonym: "sensillum" EXACT [FBbt:00007152, HAO:0000933]
xref: BTO:0001237
xref: EFO:0000939
xref: FBbt:00007152
xref: HAO:0000933
xref: MAT:0000163
xref: MIAA:0000163
xref: TGMA:0000540
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002537
name: hermaphrodite gonad
def: "a gonad with both testicular and ovarian aspects[WP]." [Wikipedia:Ovotestis]
synonym: "glandula hermaphroditica" NARROW SENSU [Wikipedia:Ovotestis#In_gastropods]
synonym: "hermaphrodite genitalia" EXACT [GO:0040035]
synonym: "hermaphrodite gland" NARROW SENSU [Wikipedia:Ovotestis#In_gastropods]
synonym: "ovotestis" RELATED [BTO:0000981]
xref: BTO:0000981
xref: EFO:0000971
xref: MAT:0000165
xref: MIAA:0000165
xref: WBbt:0005178
is_a: UBERON:0000991 ! gonad
is_a: UBERON:0007198 ! hermaphrodite anatomical structure
relationship: part_of UBERON:0007197 ! hermaphroditic organism
[Term]
id: UBERON:0002538
name: hatching gland
def: "The cells of the hatching gland contain enzymes responsible for solubilization of the egg chorion, facilitating the hatching process[GO]. A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. Kimmel et al, 1995." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "frontal gland" RELATED []
synonym: "hgg" RELATED []
xref: AAO:0011050
xref: BTO:0000558
xref: EFO:0000863
xref: MAT:0000180
xref: MIAA:0000180
xref: TAO:0000026
xref: VHOG:0000078
xref: XAO:0000034
xref: ZFA:0000026
property_value: UBPROP:0000001 "A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002530 {source="GO"} ! gland
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0002539
name: pharyngeal arch
def: "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches" [NLM:branchial+arch, PMID:16313389, Wikipedia:Pharyngeal_arch]
comment: Numbered cranial to caudal. different in mammals. branchial arch = ZFA:0001613 pharyngeal arch 3-7. generally gill arch 1 = pharyngeal arch 3. terminology varies as to whether branchial arch follows gill or pharyngeal numbering
subset: uberon_slim
subset: vertebrate_core
synonym: "arcus pharyngei" RELATED LATIN [Wikipedia:Pharyngeal_arch]
synonym: "branchial arch" NARROW [BTO:0001785, MP:0002884]
synonym: "pharyngeal arches" EXACT PLURAL []
synonym: "visceral arch" RELATED []
xref: AAO:0010359
xref: BTO:0001785
xref: EFO:0000959
xref: EHDAA:571
xref: EMAPA:16117
xref: GAID:1292
xref: http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray41.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray41.png/200px-Gray41.png
xref: MAT:0000242
xref: MESH:A.16.254.160
xref: MIAA:0000242
xref: ncithesaurus:Pharyngeal_Arch
xref: SCTID:308766004
xref: TAO:0001306
xref: VHOG:0000155
xref: XAO:0000096
xref: ZFA:0001306
property_value: UBPROP:0000001 "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO]" xsd:string
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: induced_by UBERON:0007690 {source="PMID:16313389"} ! early pharyngeal endoderm
relationship: part_of UBERON:0008814 ! pharyngeal system
relationship: part_of UBERON:0008816 {source="PMID:16313389"} ! embryonic head
[Term]
id: UBERON:0002540
name: lateral line system
def: "a line of neuroblasts along the sides of fish and amphibia that detect vibrations and pressure changes." [ISBN:0471209627, ISBN:0815318960, Wikipedia:Lateral_line_system]
subset: uberon_slim
synonym: "lateral line stitches" RELATED []
synonym: "lateral-line organs" RELATED []
synonym: "ll" RELATED []
xref: AAO:0000269
xref: AAO:0000975
xref: EFO:0000941
xref: MAT:0000249
xref: MIAA:0000249
xref: TAO:0000034
xref: VHOG:0001243
xref: XAO:0000095
xref: ZFA:0000034
property_value: RO:0002161 NCBITaxon:32524
property_value: UBPROP:0000001 "A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string
property_value: UBPROP:0000001 "Sensory system which develops from a specialized series of dorsolateral ectodermal placodes named lateral line placodes.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: is_formed_by lateral line receptor organ (AAO:0001001)[AAO]" xsd:string
is_a: UBERON:0001032 ! sensory system
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0002541
name: germ ring
def: "The thickend rim of the blastoderm evident during late blastula and gastrula stages[FishBase]. Embryonic structure which is a uniform thickened annulus at the blastoderm margin, consisting of two layers in addition to the EVL, the epiblast and the hypoblast. The germ ring is formed by the involution of the blastoderm back upon itself[ZFA]" [http://www.fishbase.org/glossary/Glossary.php?q=germ%20ring]
comment: todo - check timing of appearance and disappearance - check relationship with primitive streak. he blastopore lips in amphibians appear to have the equivalent function of the germ ring in zebrafish (ES)
subset: early_development
xref: AAO:0000211
xref: EFO:0003427
xref: MAT:0000255
xref: MIAA:0000255
xref: TAO:0000111
xref: ZFA:0000111
property_value: "dubious_for_taxon" NCBITaxon:40674
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0004734 ! gastrula
[Term]
id: UBERON:0002542
name: scale
def: "A small rigid plate that grows out of an animal's skin to provide protection. In lepidopteran (butterfly and moth) species, scales are plates on the surface of the insect wing, and provide coloration. Scales are quite common and have evolved multiple times with varying structure and function." [Wikipedia:Scale_(zoology)]
comment: Usage notes: currently defined in a very inclusive fashion - may be obsoleted and replaced by more specific classes in future versions. The TAO, VSAO amd ZFA classes by this name are classified as 'dermal scales'
subset: grouping_class
synonym: "scales" RELATED []
xref: BTO:0005055
xref: EFO:0000960
xref: HAO:0000907
xref: MAT:0000257
xref: MIAA:0000257
xref: OpenCyc:Mx4rvVi9M5wpEbGdrcN5Y29ycA
is_a: UBERON:0003102 ! surface structure
[Term]
id: UBERON:0002543
name: median fin skeleton
def: "Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism." [TAO:wd]
comment: Mistakenly placed in uberon, should remain domain of TAO for now
synonym: "axial fin skeleton" EXACT [TAO:0001123]
synonym: "unpaired fin skeleton" EXACT [ZFA:0001123]
is_obsolete: true
[Term]
id: UBERON:0002544
name: digit
def: "one of several most distal parts of a limb, such as fingers or toes, present in many vertebrates[WP]." [Wikipedia:Digit_(anatomy)]
comment: todo homology ZFA:0001588-pectoral fin distal radial. Note: This term is a GAT in FMA. Note: we elect to place a strict taxon constraint on this class - this is controversial, and may be weakened later on - see [Wikipedia:Digit_(anatomy)#Evolution].
subset: uberon_slim
synonym: "limb digit" EXACT [MA:0000690]
xref: AAO:0011126
xref: EFO:0000881
xref: FMA:85518
xref: galen:Digit
xref: MA:0000690
xref: MAT:0000285
xref: MIAA:0000285
xref: ncithesaurus:Digit
xref: OpenCyc:Mx4rvzLD_ZwpEbGdrcN5Y29ycA
xref: SCTID:361367007
xref: VHOG:0000944
xref: XAO:0003032
is_a: UBERON:0005881 ! limb outgrowth
relationship: part_of UBERON:0002470 ! autopod region
[Term]
id: UBERON:0002545
name: body ganglion
synonym: "trunk ganglion" RELATED []
xref: EFO:0000901
xref: MAT:0000344
xref: MIAA:0000344
is_obsolete: true
[Term]
id: UBERON:0002546
name: cranial placode
def: "Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" [http://www.ncbi.nlm.nih.gov/books/NBK53175/, https://github.com/seger/aao/issues/4, UBERON:cjm]
comment: Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
synonym: "placode" BROAD [Wikipedia:Placode]
xref: AAO:0010466
xref: MAT:0000369
xref: MIAA:0000369
xref: XAO:0000305
is_a: UBERON:0005085 {source="cjm"} ! ectodermal placode
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0002547
name: tadpole
def: "A an organism at the larval stage" [UBERON:cjm]
subset: uberon_slim
synonym: "tadpole stage" RELATED []
xref: BTO:0001347
xref: MAT:0000370
xref: MIAA:0000370
is_a: UBERON:0002548 ! larva
relationship: existence_starts_and_ends_during UBERON:0009849
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_starts_and_ends_during UBERON:0009849 ! tadpole stage
relationship: existence_starts_and_ends_during UBERON:0009849 ! tadpole stage
[Term]
id: UBERON:0002548
name: larva
def: "a distinct juvenile form many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [Wikipedia:Larva]
comment: This class was created automatically from a combination of ontologies. TODO: discriminate between stages and organisms
subset: uberon_slim
synonym: "ammocoete" NARROW [Wikipedia:Larva]
synonym: "bipinnaria" NARROW [Wikipedia:Larva]
synonym: "caterpillar" NARROW [Wikipedia:Larva]
synonym: "glochidium" NARROW [Wikipedia:Larva]
synonym: "grub" NARROW [Wikipedia:Larva]
synonym: "leptocephalus" NARROW [Wikipedia:Larva]
synonym: "maggot" NARROW [Wikipedia:Larva]
synonym: "naiad" NARROW [Wikipedia:Larva]
synonym: "naupilus" NARROW [Wikipedia:Larva]
synonym: "nymph" NARROW [Wikipedia:Larva]
synonym: "planula" NARROW [Wikipedia:Larva]
synonym: "tadpole" NARROW [Wikipedia:Larva]
synonym: "trochophore" NARROW [Wikipedia:Larva]
synonym: "veliger" NARROW [Wikipedia:Larva]
synonym: "wriggler" NARROW [Wikipedia:Larva]
synonym: "zoea" NARROW [Wikipedia:Larva]
xref: AEO:0000126
xref: BTO:0000707
xref: FBbt:00001727
xref: HAO:0000459
xref: MIAA:0000400
xref: OpenCyc:Mx4rwQCBvZwpEbGdrcN5Y29ycA
xref: TAO:0002048
property_value: UBPROP:0000001 "Whole organism that is premetamorphic or a very immature individual.[TAO]" xsd:string
is_a: UBERON:0000468 ! multi-cellular organism
relationship: existence_starts_and_ends_during UBERON:0000069
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_starts_and_ends_during UBERON:0000069 ! larval stage
relationship: existence_starts_and_ends_during UBERON:0000069 ! larval stage
[Term]
id: UBERON:0002549
name: ventral trigeminal tract
def: "The ventral trigeminothalamic tract serves as pain, temperature, and light touch pathway from the face, head and neck. It receives input from trigeminal nerve, facial nerve, glossopharyngeal nerve and vagus nerve. It receives discriminative tactile and pressure input from the contralateral principal sensory nucleus of CN V, which terminates in the ventral posteromedial nucleus of the thalamus. It then ascends to the contralateral sensory cortex via three neurons . [WP,unvetted]." [Wikipedia:Ventral_trigeminal_tract]
subset: uberon_slim
synonym: "anterior trigeminothalamic tract" EXACT [FMA:72506]
synonym: "tractus trigeminothalamicus anterior" EXACT [FMA:72506, FMA:TA]
synonym: "trigeminal lemniscus-2" EXACT [FMA:72506]
synonym: "ventral crossed tract" EXACT [FMA:72506]
synonym: "ventral secondary ascending tract of v" EXACT []
synonym: "ventral trigeminal pathway" EXACT [FMA:72506]
synonym: "ventral trigeminothalamic tract" EXACT [FMA:72506]
xref: FMA:72506
xref: NIF_GrossAnatomy:birnlex_1001
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002550
name: anterior hypothalamic region
synonym: "chiasmal zone" EXACT [FMA:62027]
xref: FMA:62027
xref: NIF_GrossAnatomy:birnlex_1005
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002551
name: interstitial nucleus of cajal
synonym: "interstitial nucleus" EXACT [FMA:72432]
synonym: "interstitial nucleus of medial longitudinal fasciculus" EXACT [FMA:72432]
synonym: "interstitial nucleus of medial longitudinal fasciculus (crosby)" EXACT []
synonym: "nucleus interstitialis" EXACT [FMA:72432, FMA:TA]
xref: ABA:INC
xref: BM:MB-ICA
xref: FMA:72432
xref: NIF_GrossAnatomy:birnlex_1008
xref: SCTID:369251002
property_value: "spatially_disjoint_from" UBERON:0002044
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002552
name: vestibulocerebellar tract
def: "The vestibulocerebellar tract is a tract in the pontine tegmentum which connects the vestibular nerve and the cerebellar cortex. [WP,unvetted]." [Wikipedia:Vestibulocerebellar_tract]
subset: uberon_slim
synonym: "vestibulocerebellar fibers" EXACT [FMA:72508]
xref: FMA:72508
xref: NIF_GrossAnatomy:birnlex_1009
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0003023 ! pontine tegmentum
[Term]
id: UBERON:0002553
name: anatomical cavity
def: "Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552]
synonym: "cavity" EXACT []
xref: EHDAA:2329
xref: EHDAA:2337
xref: EHDAA:2347
xref: EHDAA:293
xref: EHDAA:4741
xref: EHDAA:48
xref: EHDAA:638
xref: EHDAA:644
xref: EMAPA:16054
xref: FMA:67552
xref: galen:Cavity
xref: ncithesaurus:Lumen_Space
xref: NIF_GrossAnatomy:birnlex_1011
is_a: UBERON:0000464 ! anatomical space
relationship: location_of UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0002554
name: regional part of superior colliculus
subset: inherited_grouping_class
xref: FMA:85592
xref: NIF_GrossAnatomy:birnlex_1014
is_a: UBERON:0002966 ! regional part of midbrain tectum
relationship: part_of UBERON:0001945
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001945 ! superior colliculus
relationship: part_of UBERON:0001945 ! superior colliculus
[Term]
id: UBERON:0002555
name: intermediate hypothalamic region
def: "." [Wikipedia:Pituitary_gland#Intermediate_lobe]
comment: See notes for pars intermedia of adenohypophysis
synonym: "area hypothalamica intermedia" EXACT [FMA:62028, FMA:TA]
synonym: "intermediate hypothalamic area" EXACT [FMA:62028]
xref: FMA:62028
xref: NIF_GrossAnatomy:birnlex_1015
xref: TAO:0006000
property_value: UBPROP:0000001 "Brain structure that lies perpendicular to the longitudinal axis of the embryonic neural tube, is continuous with the rostral hypothalamic proliferation and whose most lateral extent is deflected dorsally within the inferior lobe.[TAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002556
name: corticotectal tract
synonym: "corticotectal fibers" EXACT [FMA:72419]
synonym: "corticotectal fibres" EXACT [FMA:72419]
synonym: "fibrae corticotectales" EXACT [FMA:72419, FMA:TA]
xref: BM:CTT
xref: FMA:72419
xref: NIF_GrossAnatomy:birnlex_1016
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002557
name: linear nucleus
xref: FMA:72436
xref: NIF_GrossAnatomy:birnlex_1018
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002558
name: organ cavity
synonym: "cavity of organ" EXACT [FMA:12237]
xref: FMA:12237
xref: NIF_GrossAnatomy:birnlex_1019
xref: SCTID:362606005
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0002559
name: medullary reticular formation
def: "The reticular formation is a series of brain nuclei located in the medulla oblongata" [GO:0021723]
comment: note that ZFA:0000421 is part of the the medulla oblongata, so it is placed here, rather than with the generic term
subset: vertebrate_core
synonym: "bulb reticular formation" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation" EXACT [FMA:72241]
synonym: "medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus" EXACT [MA:0001049]
synonym: "metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "reticular formation" BROAD [ZFA:0000421]
synonym: "reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla" EXACT [FMA:72241]
synonym: "reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation" EXACT [GO:0021723]
xref: ABA:MDRN
xref: BM:Me-MeRF
xref: FMA:72241
xref: GAID:588
xref: MA:0001049
xref: NIF_GrossAnatomy:birnlex_1020
xref: SCTID:369059009
xref: TAO:0000421
xref: ZFA:0000421
property_value: "spatially_disjoint_from" UBERON:0001719
property_value: "spatially_disjoint_from" UBERON:0002127
property_value: "spatially_disjoint_from" UBERON:0002155
property_value: "spatially_disjoint_from" UBERON:0002673
property_value: "spatially_disjoint_from" UBERON:0002870
property_value: "spatially_disjoint_from" UBERON:0002871
property_value: "spatially_disjoint_from" UBERON:0002872
property_value: "spatially_disjoint_from" UBERON:0002877
is_a: UBERON:0002275 {source="FMA"} ! reticular formation
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0001896
intersection_of: UBERON:0002275 ! reticular formation
intersection_of: part_of UBERON:0001896 ! medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata
[Term]
id: UBERON:0002560
name: temporal operculum
synonym: "facies supratemporalis" EXACT [FMA:74891]
xref: FMA:74891
xref: NIF_GrossAnatomy:birnlex_1025
xref: SCTID:369222001
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0010262 ! operculum of brain
[Term]
id: UBERON:0002561
name: neuraxis cavity
synonym: "cavity of neuraxis" EXACT [FMA:75007]
synonym: "cavity of ventricular system of neuraxis" EXACT [FMA:75007]
synonym: "neuraxis cavity" EXACT [FMA:75007]
xref: FMA:75007
xref: NIF_GrossAnatomy:birnlex_1029
is_a: UBERON:0002558 ! organ cavity
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0002562
name: superior frontal sulcus
def: "The superior frontal sulcus is a sulcus between the superior frontal gyrus and the middle frontal gyrus. [WP,unvetted]." [Wikipedia:Superior_frontal_sulcus]
subset: uberon_slim
synonym: "sulcus f1" EXACT [FMA:83755]
synonym: "sulcus frontalis primus" EXACT [NIF_GrossAnatomy:birnlex_1030]
synonym: "sulcus frontalis superior" EXACT [NIF_GrossAnatomy:birnlex_1030]
synonym: "sulcus frontalis superior" RELATED LATIN [Wikipedia:Superior_frontal_sulcus]
synonym: "superior frontal fissure" EXACT [FMA:83755]
xref: FMA:83755
xref: http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray726_Superior_frontal_sulcus.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray726_Superior_frontal_sulcus.svg/200px-Gray726_Superior_frontal_sulcus.svg.png
xref: ncithesaurus:Superior_Frontal_Sulcus
xref: NIF_GrossAnatomy:birnlex_1030
xref: SCTID:279342009
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002563
name: central nucleus of inferior colliculus
synonym: "chief nucleus of inferior colliculus" EXACT [FMA:72413]
synonym: "inferior colliculus, central nucleus" EXACT [FMA:72413]
synonym: "nucleus of inferior colliculus (crosby)" EXACT []
xref: ABA:ICc
xref: BM:MB-Tec-ICC
xref: FMA:72413
xref: NIF_GrossAnatomy:birnlex_1035
property_value: "spatially_disjoint_from" UBERON:0002571
is_a: UBERON:0002917 ! regional part of inferior colliculus
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0002564
name: lateral orbital gyrus
xref: FMA:62418
xref: NIF_GrossAnatomy:birnlex_1036
xref: SCTID:279195001
is_a: UBERON:0007193 ! orbital gyrus
[Term]
id: UBERON:0002565
name: olivary pretectal nucleus
def: "The pretectum, also known as the pretectal area, is a region of neurons found between the thalamus and midbrain. It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex. [WP,unvetted]." [Wikipedia:Olivary_pretectal_nucleus]
subset: uberon_slim
synonym: "anterior pretectal nucleus" EXACT [FMA:72405]
synonym: "nucleus pretectalis anterior" EXACT [FMA:72405, FMA:TA]
synonym: "olivary nucleus of superior colliculus" EXACT [FMA:72405]
synonym: "pretectal olivary nucleus" EXACT [FMA:72405]
xref: ABA:OP
xref: BM:MB-Tec-OPT
xref: FMA:72405
xref: NIF_GrossAnatomy:birnlex_1037
property_value: "spatially_disjoint_from" UBERON:0002711
property_value: "spatially_disjoint_from" UBERON:0002996
property_value: "spatially_disjoint_from" UBERON:0006848
is_a: UBERON:0003047 ! regional part of pretectal region
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002566
name: superior precentral sulcus
synonym: "precentral dimple" EXACT [FMA:83763]
synonym: "sulcus praecentralis superior" EXACT [NIF_GrossAnatomy:birnlex_1038]
synonym: "sulcus precentralis superior" EXACT [NIF_GrossAnatomy:birnlex_1038]
synonym: "superior part of precentral fissure" EXACT [FMA:83763]
xref: FMA:83763
xref: NIF_GrossAnatomy:birnlex_1038
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002567
name: basal part of pons
synonym: "basal portion of pons" EXACT [FMA:72244]
synonym: "base of pons" EXACT [FMA:72244]
synonym: "basilar part of pons" EXACT [FMA:72244]
synonym: "pars basilaris pontis" EXACT [FMA:72244, FMA:TA]
synonym: "pons proper" EXACT [FMA:72244]
synonym: "ventral portion of pons" EXACT [FMA:72244]
xref: FMA:72244
xref: NIF_GrossAnatomy:birnlex_1043
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_part UBERON:0002152 ! middle cerebellar peduncle
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002568
name: amiculum of dentate nucleus
synonym: "dentate nuclear amiculum" EXACT [FMA:72546]
xref: FMA:72546
xref: NIF_GrossAnatomy:birnlex_1044
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002132 ! dentate nucleus
[Term]
id: UBERON:0002569
name: transverse temporal sulcus
xref: FMA:83782
xref: NIF_GrossAnatomy:birnlex_1045
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002570
name: medial orbital gyrus
xref: FMA:62419
xref: NIF_GrossAnatomy:birnlex_1046
xref: SCTID:279194002
is_a: UBERON:0007193 ! orbital gyrus
[Term]
id: UBERON:0002571
name: external nucleus of inferior colliculus
xref: ABA:ICe
xref: BM:MB-Tec-ICX
xref: FMA:72412
xref: NIF_GrossAnatomy:birnlex_1047
property_value: "spatially_disjoint_from" UBERON:0002563
is_a: UBERON:0002917 ! regional part of inferior colliculus
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0002572
name: principal pretectal nucleus
xref: FMA:72402
xref: NIF_GrossAnatomy:birnlex_1048
is_a: UBERON:0003047 ! regional part of pretectal region
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002573
name: pontine reticular formation
def: "The reticular formation is a part of the brain that is involved in actions such as awaking/sleeping cycle, and filtering incoming stimuli to discriminate irrelevant background stimuli. It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain. [WP,unvetted]." [Wikipedia:Pontine_reticular_formation]
subset: uberon_slim
synonym: "pons of varolius reticular formation" EXACT [OBOL:automatic]
synonym: "pons reticular formation" EXACT [OBOL:automatic]
synonym: "pontine reticular nucleus" EXACT [ABA:PRNr]
synonym: "reticular formation of pons" EXACT [FMA:68876]
synonym: "reticular formation of pons of varolius" EXACT [OBOL:automatic]
xref: ABA:PRNr
xref: BM:Pons-PRF
xref: FMA:68876
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png
xref: NIF_GrossAnatomy:birnlex_1050
xref: SCTID:362403007
is_a: UBERON:0002275 {source="FMA"} ! reticular formation
is_a: UBERON:0002680 ! regional part of metencephalon
relationship: part_of UBERON:0000988
intersection_of: UBERON:0002275 ! reticular formation
intersection_of: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum
[Term]
id: UBERON:0002574
name: regional part of inferior olivary complex
def: "A regional part of brain that is part of a inferior olivary complex [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of inferior olive" EXACT [OBOL:automatic]
synonym: "biological structure of brain of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "biological structure of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "biological structure of brain of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of inferior olive" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of inferior olive" EXACT [OBOL:automatic]
synonym: "brain biological structure of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "brain biological structure of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "brain biological structure of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "brain biological structure of inferior olive" EXACT [OBOL:automatic]
synonym: "inferior olivary complex anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary complex biological structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary complex brain anatomical structure" EXACT [OBOL:automatic]
synonym: "inferior olivary complex brain biological structure" EXACT [OBOL:automatic]
synonym: "inferior olivary complex neuraxis segment" EXACT [OBOL:automatic]
synonym: "inferior olivary complex regional part of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary complex segment" EXACT [FMA:71259]
synonym: "inferior olivary complex segment of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex biological structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex brain anatomical structure" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex brain biological structure" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex neuraxis segment" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex regional part of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex segment of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus biological structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus brain biological structure" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus neuraxis segment" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus regional part of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus segment of brain" EXACT [OBOL:automatic]
synonym: "inferior olive anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olive biological structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olive brain anatomical structure" EXACT [OBOL:automatic]
synonym: "inferior olive brain biological structure" EXACT [OBOL:automatic]
synonym: "inferior olive neuraxis segment" EXACT [OBOL:automatic]
synonym: "inferior olive regional part of brain" EXACT [OBOL:automatic]
synonym: "inferior olive segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "neuraxis segment of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "neuraxis segment of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of inferior olive" EXACT [OBOL:automatic]
synonym: "regional part of brain of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "regional part of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "regional part of brain of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "regional part of brain of inferior olive" EXACT [OBOL:automatic]
synonym: "segment of brain of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "segment of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "segment of brain of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "segment of brain of inferior olive" EXACT [OBOL:automatic]
synonym: "segment of inferior olivary complex" EXACT [NIF_GrossAnatomy:birnlex_1052]
xref: FMA:71259
xref: NIF_GrossAnatomy:birnlex_1052
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0002127
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0002127 ! inferior olivary complex
relationship: part_of UBERON:0002127 ! inferior olivary complex
[Term]
id: UBERON:0002575
name: posterior orbital gyrus
xref: FMA:80184
xref: NIF_GrossAnatomy:birnlex_1054
xref: SCTID:279197009
is_a: UBERON:0007193 ! orbital gyrus
[Term]
id: UBERON:0002576
name: temporal pole
def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]." [Wikipedia:Temporal_pole]
subset: uberon_slim
synonym: "polus temporalis" EXACT [NeuroNames:126]
xref: FMA:74890
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG
xref: NIF_GrossAnatomy:birnlex_1055
xref: SCTID:314155002
is_a: UBERON:0009899 ! pole of cerebral hemisphere
relationship: part_of UBERON:0001871
intersection_of: UBERON:0009899 ! pole of cerebral hemisphere
intersection_of: part_of UBERON:0001871 ! temporal lobe
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002577
name: pericentral nucleus of inferior colliculus
synonym: "cortex of inferior colliculus" EXACT [FMA:72411]
xref: BM:MB-Tec-ICP
xref: FMA:72411
xref: NIF_GrossAnatomy:birnlex_1056
is_a: UBERON:0002917 ! regional part of inferior colliculus
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0002578
name: sublentiform nucleus
xref: FMA:72404
xref: NIF_GrossAnatomy:birnlex_1057
is_a: UBERON:0003047 ! regional part of pretectal region
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002579
name: regional part of medullary reticular formation
def: "A regional part of brain that is part of a medullary reticular formation [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "biological structure of brain of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "biological structure of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "biological structure of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "biological structure of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "biological structure of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "brain biological structure of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "brain biological structure of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "brain biological structure of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain biological structure of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "brain biological structure of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "brain biological structure of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "bulb reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "bulb reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "bulb reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "bulb reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "bulb reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "bulb reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "bulb reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medullary reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "medullary reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "medullary reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular formation segment" EXACT [FMA:73730]
synonym: "medullary reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus biological structure of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus brain biological structure" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus neuraxis segment" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus regional part of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus segment of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "neuraxis segment of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "neuraxis segment of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "neuraxis segment of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "neuraxis segment of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "neuraxis segment of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "neuraxis segment of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "neuraxis segment of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "regional part of brain of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "regional part of brain of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "regional part of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "regional part of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "regional part of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "regional part of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb biological structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb brain anatomical structure" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb brain biological structure" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb neuraxis segment" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb regional part of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb segment of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla biological structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla brain anatomical structure" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla brain biological structure" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla neuraxis segment" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata biological structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata brain anatomical structure" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata brain biological structure" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata neuraxis segment" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata regional part of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata segment of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata biological structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata brain anatomical structure" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata brain biological structure" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata neuraxis segment" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata regional part of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata segment of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla regional part of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla segment of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon biological structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon brain anatomical structure" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon brain biological structure" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon neuraxis segment" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon segment of brain" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "segment of brain of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "segment of brain of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "segment of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "segment of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "segment of brain of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "segment of brain of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "segment of brain of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "segment of brain of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "segment of brain of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "segment of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "segment of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "segment of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "segment of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "segment of medullary reticular formation" EXACT [NIF_GrossAnatomy:birnlex_1060]
xref: FMA:73730
xref: NIF_GrossAnatomy:birnlex_1060
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0002559
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0002559 ! medullary reticular formation
relationship: part_of UBERON:0002559 ! medullary reticular formation
[Term]
id: UBERON:0002580
name: brachium of superior colliculus
def: "The brachium of superior colliculus (or superior brachium) extends lateralward from the superior colliculus, and, passing between the pulvinar and medial geniculate body, is partly continued into an eminence called the lateral geniculate body, and partly into the optic tract. [WP,unvetted]." [Wikipedia:Brachium_of_superior_colliculus]
subset: uberon_slim
synonym: "brachium colliculi superioris" RELATED LATIN [Wikipedia:Brachium_of_superior_colliculus]
synonym: "superior brachium" EXACT [FMA:72417]
synonym: "superior collicular brachium" EXACT [FMA:72417]
synonym: "superior colliculus brachium" EXACT [FMA:72417]
synonym: "superior quadrigeminal brachium" EXACT [FMA:72417]
xref: BM:MB-BSC
xref: FMA:72417
xref: http://upload.wikimedia.org/wikipedia/commons/2/29/Human_brainstem-thalamus_posterior_view_description.JPG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Human_brainstem-thalamus_posterior_view_description.JPG/200px-Human_brainstem-thalamus_posterior_view_description.JPG
xref: NIF_GrossAnatomy:birnlex_1065
is_a: UBERON:0003544 ! brain white matter
relationship: part_of UBERON:0001945 ! superior colliculus
[Term]
id: UBERON:0002581
name: postcentral gyrus
def: "The lateral postcentral gyrus is a prominent structure in the parietal lobe of the human brain and an important landmark. It was initially defined from surface stimulation studies of Penfield, and parallel surface potential studies of Bard, Woolsey, and Marshall. Although initially defined to be roughly the same as Brodmann areas 3, 1 and 2, more recent work by Kaas has suggested that for homogeny with other sensory fields only area 3 should be referred to as 'primary somatosensory cortex', as it received the bulk of the thalamocortical projection from the sensory input fields. [WP,unvetted]." [Wikipedia:Postcentral_gyrus]
subset: uberon_slim
synonym: "postcentral convolution" EXACT [FMA:61896]
synonym: "posterior central gyrus" EXACT [FMA:61896]
synonym: "postrolandic gyrus" EXACT [FMA:61896]
xref: BTO:0004354
xref: EFO:0001383
xref: FMA:61896
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Postcentral_gyrus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Postcentral_gyrus.png/200px-Postcentral_gyrus.png
xref: ncithesaurus:Postcentral_Gyrus
xref: NIF_GrossAnatomy:birnlex_1070
xref: SCTID:279167001
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0001872 ! parietal lobe
[Term]
id: UBERON:0002582
name: anterior calcarine sulcus
synonym: "anterior calcarine fissure" EXACT [FMA:83750]
synonym: "sulcus calcarinus anterior" EXACT [NIF_GrossAnatomy:birnlex_1072]
xref: FMA:83750
xref: NIF_GrossAnatomy:birnlex_1072
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002583
name: commissure of superior colliculus
def: "A commissure that is part of a superior colliculus [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "anterior colliculus commissure" EXACT [OBOL:automatic]
synonym: "anterior corpus quadrigeminum commissure" EXACT [OBOL:automatic]
synonym: "commissure of anterior colliculus" EXACT [OBOL:automatic]
synonym: "commissure of anterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "commissure of cranial colliculus" EXACT [OBOL:automatic]
synonym: "commissure of optic tectum" EXACT [OBOL:automatic]
synonym: "commissure of superior colliculi" EXACT [FMA:72418]
synonym: "cranial colliculus commissure" EXACT [OBOL:automatic]
synonym: "intertectal commissure" EXACT SENSU [ZFA:0000684]
synonym: "optic tectum commissure" EXACT [OBOL:automatic]
synonym: "superior colliculus commissure" EXACT [FMA:72418]
xref: BM:MB-Tec-SC-SCX
xref: FMA:72418
xref: NIF_GrossAnatomy:birnlex_1073
xref: SCTID:369258008
xref: TAO:0000684
xref: ZFA:0000684
is_a: UBERON:0005970 ! brain commissure
relationship: part_of UBERON:0001945
intersection_of: UBERON:0001020 ! commissure
intersection_of: part_of UBERON:0001945 ! superior colliculus
relationship: part_of UBERON:0001945 ! superior colliculus
[Term]
id: UBERON:0002584
name: regional part of vestibular nuclear complex
def: "A regional part of brain that is part of a vestibular nuclear complex [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "biological structure of brain of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "biological structure of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "biological structure of brain of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "brain biological structure of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "brain biological structure of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "brain biological structure of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain biological structure of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "neuraxis segment of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "neuraxis segment of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "neuraxis segment of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "regional part of brain of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "regional part of brain of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "regional part of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "regional part of brain of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "segment of brain of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "segment of brain of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "segment of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "segment of brain of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "segment of vestibular nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1080]
synonym: "vestibular nuclear complex anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclear complex biological structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclear complex brain anatomical structure" EXACT [OBOL:automatic]
synonym: "vestibular nuclear complex brain biological structure" EXACT [OBOL:automatic]
synonym: "vestibular nuclear complex neuraxis segment" EXACT [OBOL:automatic]
synonym: "vestibular nuclear complex regional part of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclear complex segment" EXACT [FMA:71267]
synonym: "vestibular nuclear complex segment of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei biological structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei brain anatomical structure" EXACT [OBOL:automatic]
synonym: "vestibular nuclei brain biological structure" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata biological structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata brain anatomical structure" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata brain biological structure" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata neuraxis segment" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata regional part of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata segment of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei neuraxis segment" EXACT [OBOL:automatic]
synonym: "vestibular nuclei regional part of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei segment of brain" EXACT [OBOL:automatic]
synonym: "vestibular nucleus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nucleus biological structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nucleus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "vestibular nucleus brain biological structure" EXACT [OBOL:automatic]
synonym: "vestibular nucleus neuraxis segment" EXACT [OBOL:automatic]
synonym: "vestibular nucleus regional part of brain" EXACT [OBOL:automatic]
synonym: "vestibular nucleus segment of brain" EXACT [OBOL:automatic]
xref: FMA:71267
xref: NIF_GrossAnatomy:birnlex_1080
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0002673
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0002673 ! vestibular nuclear complex
relationship: part_of UBERON:0002673 ! vestibular nuclear complex
[Term]
id: UBERON:0002585
name: central tegmental tract of midbrain
xref: FMA:72456
xref: NIF_GrossAnatomy:birnlex_1081
xref: SCTID:369243000
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002586
name: calcarine sulcus
def: "The calcarine fissure is an anatomical landmark located at the caudal end of the medial surface of the brain. [WP,unvetted]." [Wikipedia:Calcarine_sulcus]
subset: uberon_slim
synonym: "calcarine fissure" EXACT [FMA:83749]
synonym: "sulcus calcarinus" EXACT [NIF_GrossAnatomy:birnlex_1086]
xref: BM:Tel-Cx-CAS
xref: FMA:83749
xref: ncithesaurus:Calcarine_Sulcus
xref: NIF_GrossAnatomy:birnlex_1086
xref: SCTID:279355005
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002587
name: nucleus subceruleus
synonym: "nucleus subcaeruleus" EXACT [FMA:72479, FMA:TA]
synonym: "subcaerulean nucleus" EXACT [FMA:72479]
synonym: "subceruleus nucleus" EXACT []
synonym: "subcoeruleus nucleus" EXACT []
xref: ABA:SLC
xref: FMA:72479
xref: NIF_GrossAnatomy:birnlex_1088
property_value: "spatially_disjoint_from" UBERON:0002047
property_value: "spatially_disjoint_from" UBERON:0002148
property_value: "spatially_disjoint_from" UBERON:0002267
property_value: "spatially_disjoint_from" UBERON:0003004
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002588
name: decussation of superior cerebellar peduncle
alt_id: UBERON:0003032
def: "Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). The decussation of superior cerebellar peduncle is the portion of the superior cerebellar peduncle which crosses into the midbrain. [WP,unvetted]." [NIF_GrossAnatomy:birnlex_1089, Wikipedia:Decussation_of_superior_cerebellar_peduncle]
subset: uberon_slim
synonym: "decussatio pedunculorum cerebellarium superiorum" EXACT [FMA:72455, FMA:TA]
synonym: "decussation of brachium conjunctivum" EXACT [FMA:72455]
synonym: "decussation of superior cerebellar peduncles" EXACT [FMA:72455]
synonym: "superior cerebellar peduncle decussation" EXACT [FMA:72455]
synonym: "Wernekink's decussation" EXACT [FMA:72455]
xref: BM:BCX
xref: FMA:72455
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Gray711.png/200px-Gray711.png
xref: NIF_GrossAnatomy:birnlex_1089
xref: SCTID:369252009
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0007418 ! decussation of neuraxis
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum
relationship: part_of UBERON:0002150 ! superior cerebellar peduncle
[Term]
id: UBERON:0002589
name: lateral corticospinal tract
def: "The lateral corticospinal tract (also called the crossed pyramidal tract or lateral cerebrospinal fasciculus) is the largest part of the corticospinal tract. It extends throughout the entire length of the medulla spinalis, and on transverse section appears as an oval area in front of the posterior column and medial to the posterior spinocerebellar tract. Its fibres arise from cells in the motor area of the cerebral hemisphere of the opposite side. They pass downward in company with those of the anterior corticospinal tract through the same side of the brain as that from which they originate, but they cross to the opposite side in the medulla oblongata and descend in the lateral funiculus of the medulla spinalis. The lateral corticospinal tract controls movement of contralateral limbs. Control of more central axial and girdle muscles comes from the anterior corticospinal tract. [WP,unvetted]." [Wikipedia:Lateral_corticospinal_tract]
subset: uberon_slim
synonym: "lateral pyramidal tract" EXACT [FMA:72635]
synonym: "tractus corticospinalis lateralis, fasciculus cerebrospinalis lateralis" RELATED LATIN [Wikipedia:Lateral_corticospinal_tract]
xref: FMA:72635
xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg
xref: NIF_GrossAnatomy:birnlex_1095
xref: SCTID:369091005
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002590
name: prepyriform area
synonym: "(pre-)piriform cortex" EXACT [NIF_GrossAnatomy:birnlex_1097]
synonym: "gyrus olfactorius lateralis" EXACT [FMA:62484, FMA:TA]
synonym: "lateral olfactory gyrus" EXACT [FMA:62484]
synonym: "piriform cortex (price)" EXACT []
synonym: "piriform olfactory cortex" EXACT [NIF_GrossAnatomy:birnlex_1097]
synonym: "prepiriform cortex" EXACT [FMA:62484]
synonym: "prepyriform cortex" EXACT [FMA:62484]
synonym: "pyriform area" EXACT [NIF_GrossAnatomy:birnlex_1097]
xref: ABA:PIR
xref: BM:Tel-PRP
xref: FMA:62484
xref: NIF_GrossAnatomy:birnlex_1097
xref: SCTID:369104008
property_value: "spatially_disjoint_from" UBERON:0002266
property_value: "spatially_disjoint_from" UBERON:0002893
property_value: "spatially_disjoint_from" UBERON:0004069
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002591
name: oral part of spinal trigeminal nucleus
xref: ABA:SPVO
xref: FMA:235322
xref: NIF_GrossAnatomy:birnlex_1100
property_value: "spatially_disjoint_from" UBERON:0002126
property_value: "spatially_disjoint_from" UBERON:0002162
property_value: "spatially_disjoint_from" UBERON:0002610
property_value: "spatially_disjoint_from" UBERON:0002864
property_value: "spatially_disjoint_from" UBERON:0002866
property_value: "spatially_disjoint_from" UBERON:0002873
property_value: "spatially_disjoint_from" UBERON:0007633
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve
[Term]
id: UBERON:0002592
name: juxtarestiform body
def: "The juxtarestiform body is a subdivision of the inferior cerebellar peduncle, which comprises both the juxtarestiform and restiform bodies. [WP,unvetted]." [Wikipedia:Juxtarestiform_body]
subset: uberon_slim
xref: FMA:72613
xref: http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray677.png
xref: NIF_GrossAnatomy:birnlex_1101
xref: SCTID:110687007
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002593
name: orbital operculum
xref: FMA:74887
xref: NIF_GrossAnatomy:birnlex_1102
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0010262 ! operculum of brain
[Term]
id: UBERON:0002594
name: dentatothalamic tract
def: "The dentatothalamic tract (or dentatorubrothalamic tract) is a tract which connects the dentate nucleus and the thalamus. [WP,unvetted]." [Wikipedia:Dentatothalamic_tract]
subset: uberon_slim
synonym: "dentatothalamic fibers" EXACT [FMA:72462]
synonym: "tractus dentatothalamicus" RELATED LATIN [Wikipedia:Dentatothalamic_tract]
xref: FMA:72462
xref: NIF_GrossAnatomy:birnlex_1104
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002595
name: orbital sulcus
synonym: "cruciate sulcus of campbell" EXACT [NIF_GrossAnatomy:birnlex_1112]
synonym: "orbital sulci" EXACT [FMA:83770]
synonym: "sulcus orbitalis" EXACT [NIF_GrossAnatomy:birnlex_1112]
xref: BM:Tel-Cx-ORS
xref: FMA:83770
xref: ncithesaurus:Orbital_Sulcus
xref: NIF_GrossAnatomy:birnlex_1112
xref: SCTID:314143008
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002596
name: ventral posterior nucleus
def: "The ventral posterior nucleus is the somato-sensory relay nucleus in thalamus of the brain. [WP,unvetted]." [Wikipedia:Ventral_posterior_nucleus]
subset: uberon_slim
synonym: "nucleus ventrales posteriores" EXACT [NIF_GrossAnatomy:birnlex_1116]
synonym: "nucleus ventralis posterior" EXACT [NIF_GrossAnatomy:birnlex_1116]
synonym: "ventral posterior thalamic nucleus" EXACT [FMA:62187]
synonym: "ventrobasal complex" EXACT [FMA:62187]
synonym: "ventrobasal nucleus" EXACT [FMA:62187]
xref: BM:Die-Th-VPI
xref: BTO:0004373
xref: BTO:0004374
xref: EV:0100209
xref: FMA:62187
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_1116
xref: SCTID:279147005
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0002776 {source="FMA"} ! ventral nuclear group
[Term]
id: UBERON:0002597
name: principal sensory nucleus of trigeminal nerve
def: "The principal sensory nucleus (or chief sensory nucleus of V) is a group of second order neurons which have cell bodies in the dorsal Pons. It receives information about discriminative sensation and light touch of the face as well as conscious proprioception of the jaw via first order neurons of CN V. Most of the sensory information crosses the midline and travels to the contralateral ventral posteriomedial (VPM) of the thalamus via the Ventral Trigeminothalamic Tract, but information of the oral cavity travels to the ipsilateral Ventral Posteriomedial (VPM) of the thalamus via the Dorsal Trigeminothalamic Tract. [WP,unvetted]." [GO:0021730, Wikipedia:Chief_sensory_nucleus]
comment: GO has pontine nucleus as a child of trigeminal sensory nucleus, WP says this is a synonym, but we have a separate class for this - UBERON:0002151
subset: uberon_slim
synonym: "chief sensory nucleus" EXACT [FMA:54533]
synonym: "main sensory nucleus" EXACT [FMA:54533]
synonym: "main sensory nucleus of cranial nerve v" EXACT []
synonym: "pontine nucleus" RELATED INCONSISTENT [GO:0021740, Wikipedia:Trigeminal_nuclei]
synonym: "principal sensory nucleus" EXACT []
synonym: "principal sensory nucleus of trigeminal nerve" EXACT [FMA:54533]
synonym: "principal sensory trigeminal nucleus" EXACT [FMA:54533]
synonym: "principal trigeminal nucleus" EXACT [FMA:54533]
synonym: "superior trigeminal nucleus" EXACT [FMA:54533]
synonym: "superior trigeminal sensory nucleus" EXACT [FMA:54533]
synonym: "trigeminal nerve superior sensory nucleus" EXACT [FMA:54533]
synonym: "trigeminal V chief sensory nucleus" EXACT [MA:0002740]
synonym: "trigeminal V principal sensory nucleus" EXACT [MA:0002740]
xref: ABA:PSV
xref: BM:VP
xref: EHDAA2:0004628
xref: EV:0100274
xref: FMA:54533
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0002740
xref: ncithesaurus:Principal_Sensory_Nucleus_of_the_Trigeminal_Nerve
xref: NIF_GrossAnatomy:birnlex_1120
xref: SCTID:369031008
property_value: "spatially_disjoint_from" UBERON:0002128
property_value: "spatially_disjoint_from" UBERON:0006840
property_value: "spatially_disjoint_from" UBERON:0007634
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0004132 {source="MA"} ! trigeminal sensory nucleus
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0003023 {source="NIF"} ! pontine tegmentum
[Term]
id: UBERON:0002598
name: paracentral sulcus
synonym: "sulcus subcentralis medialis" EXACT [NIF_GrossAnatomy:birnlex_1121]
xref: FMA:83762
xref: NIF_GrossAnatomy:birnlex_1121
xref: SCTID:369228002
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002599
name: medial olfactory gyrus
xref: FMA:74509
xref: NIF_GrossAnatomy:birnlex_1127
xref: SCTID:369103002
is_a: UBERON:0000200 ! gyrus
disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon
[Term]
id: UBERON:0002600
name: limbic lobe
def: "The limbic lobe (also known as the Cingulate) is a portion of the brain associated with functions such as olfaction and emotion. It contains parts of other lobes, including the frontal, parietal, and temporal. Its main components are the fornicate gyrus, the hippocampus, and the amygdala It is related to the term limbic system, but unlike that term, 'limbic lobe' is a part of the Terminologia Anatomica, and there is less disagreement over what is included in the 'limbic lobe' than there is over what is included in the 'limbic system'. [WP,unvetted]." [Wikipedia:Limbic_lobe]
subset: uberon_slim
synonym: "fornicate gyrus" EXACT [FMA:72719]
synonym: "grande lobe limbique of broca" EXACT []
synonym: "limbic lobe (carpenter)" EXACT []
synonym: "lobus limbicus" RELATED LATIN [Wikipedia:Limbic_lobe]
xref: FMA:72719
xref: http://upload.wikimedia.org/wikipedia/commons/7/7e/Human_brain_inferior-medial_view_description.JPG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Human_brain_inferior-medial_view_description.JPG/200px-Human_brain_inferior-medial_view_description.JPG
xref: NIF_GrossAnatomy:birnlex_1128
xref: SCTID:279215006
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
[Term]
id: UBERON:0002601
name: fasciolar gyrus
def: "a small paired band that passes around the splenium of the corpus callosum from the lateral longitudinal stria to the dentate gyrus[Biology-Online]. A posterior and upward extension of the dentate gyrus, forming a transitional area between the dentate gyrus and the indusium griseum[BTO]." [BTO:0002497, http://www.biology-online.org/dictionary/Fasciolar_gyrus]
comment: TODO - existing definitions, synonyms and relationships in existing AOs seem contradictory; to be resolved. We take the dentate gyrus relationship from BTO, and it is also implied by the FMA synonym. However, FMA says archiortex (embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus) and NIF says limbic lobe (which is more general than hippocampus). ABA xref made on basis of BTO related synonym
synonym: "fasciola cinerea" RELATED [BTO:0002497]
synonym: "gyrus fasciolaris" RELATED [BTO:0002497]
synonym: "retrosplenial gyrus of hippocampus" EXACT [FMA:61921]
xref: ABA:FC
xref: BTO:0002497
xref: FMA:61921
xref: NIF_GrossAnatomy:birnlex_1129
xref: SCTID:279210001
property_value: "spatially_disjoint_from" UBERON:0001885
property_value: "spatially_disjoint_from" UBERON:0001954
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002602
name: emboliform nucleus
def: "The emboliform nucleus lies immediately to the medial side of the nucleus dentatus, and partly covering its hilus. It is one among the four pairs of cerebellar nuclei, which are from lateral to medial: the dentate, interposed (emboliform and globose), and fastigial nuclei. These nuclei can be seen using the Weigert method staining. [WP,unvetted]." [Wikipedia:Emboliform_nucleus]
subset: uberon_slim
synonym: "anterior interposed nucleus" EXACT [FMA:72538]
synonym: "anterior interpositus nucleus" EXACT [FMA:72538]
synonym: "nucleus emboliformis" RELATED LATIN [Wikipedia:Emboliform_nucleus]
synonym: "nucleus interpositus anterior" EXACT [FMA:72538, FMA:TA]
xref: FMA:72538
xref: http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png
xref: NIF_GrossAnatomy:birnlex_1135
is_a: UBERON:0002946 ! regional part of cerebellum
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002603
name: paraterminal gyrus
def: "The paraterminal gyrus (subcallosal gyrus, peduncle of the corpus callosum) is a narrow lamina on the medial surface of the hemisphere in front of the lamina terminalis, behind the parolfactory area, and below the rostrum of the corpus callosum. It is continuous around the genu of the corpus callosum with the supracallosal gyrus. [WP,unvetted]." [Wikipedia:Paraterminal_gyrus]
subset: uberon_slim
synonym: "gyrus paraterminalis, gyrus subcallosus" RELATED LATIN [Wikipedia:Paraterminal_gyrus]
synonym: "precommissural hippocampus" EXACT [FMA:61919]
synonym: "subcallosal gyrus" EXACT [FMA:61919]
xref: FMA:61919
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: NIF_GrossAnatomy:birnlex_1138
is_a: UBERON:0002665 ! supracallosal gyrus
[Term]
id: UBERON:0002604
name: ventral nucleus of lateral lemniscus
def: "The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]." [Wikipedia:Ventral_nucleus_of_the_lateral_lemniscus]
subset: uberon_slim
synonym: "anterior nucleus of lateral lemniscus" EXACT [FMA:72484]
synonym: "nucleus anterior lemnisci lateralis" EXACT [FMA:72484, FMA:TA]
synonym: "nucleus of the lateral lemniscus, ventral part" EXACT [ABA:NLLv]
synonym: "ventral nucleus of the lateral lemniscus" EXACT [FMA:72484]
xref: ABA:NLLv
xref: BM:LLV
xref: FMA:72484
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Lateral_lemniscus.PNG/200px-Lateral_lemniscus.PNG
xref: NIF_GrossAnatomy:birnlex_1140
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0006840 ! nucleus of lateral lemniscus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0003023 {source="FMA", source="NIF"} ! pontine tegmentum
[Term]
id: UBERON:0002605
name: precentral operculum
xref: FMA:74888
xref: NIF_GrossAnatomy:birnlex_1141
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0010262 ! operculum of brain
[Term]
id: UBERON:0002606
name: neuropil
def: "A dense intricate feltwork of interwoven fine glial processes, fibrils, synaptic terminals, axons, and dendrites interspersed among the nerve cells of the central nervous system[MESH]" [MESH:A.08.637.500, Wikipedia:Neuropil]
subset: uberon_slim
synonym: "neuropilus" RELATED LATIN [Wikipedia:Neuropil]
xref: FBbt:00005139
xref: FMA:261269
xref: GAID:740
xref: MESH:A.08.637.500
xref: ncithesaurus:Neuropil
xref: NIF_GrossAnatomy:birnlex_1142
xref: NIF_Subcellular:sao205380252
xref: SCTID:67146008
is_a: UBERON:0011215 ! cell part cluster of neuraxis
relationship: part_of UBERON:0001017 {source="FBbt"} ! central nervous system
[Term]
id: UBERON:0002607
name: superior rostral sulcus
synonym: "sulcus rostralis superior" EXACT [NIF_GrossAnatomy:birnlex_1143]
xref: FMA:83766
xref: NIF_GrossAnatomy:birnlex_1143
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002608
name: caudal part of ventral lateral nucleus
synonym: "dorsal part of ventral lateral posterior nucleus (jones)" EXACT []
synonym: "nucleus dorsooralis (van buren)" EXACT [NIF_GrossAnatomy:birnlex_1144]
synonym: "nucleus lateralis intermedius mediodorsalis situs dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1144]
synonym: "nucleus ventralis lateralis, pars caudalis" EXACT [NIF_GrossAnatomy:birnlex_1144]
synonym: "ventral lateral nucleus, caudal part" EXACT [FMA:62194]
synonym: "ventral lateral thalamic nucleus, caudal part" EXACT [FMA:62194]
xref: FMA:62194
xref: NIF_GrossAnatomy:birnlex_1144
is_a: UBERON:0003528 ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002609
name: spinothalamic tract of midbrain
xref: FMA:72463
xref: NIF_GrossAnatomy:birnlex_1150
xref: SCTID:369090006
is_a: UBERON:0007702 {source="FMA"} ! tract of brain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001943 ! midbrain tegmentum
relationship: part_of UBERON:0007703 ! spinothalamic tract
[Term]
id: UBERON:0002610
name: cochlear nuclear complex
def: "The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]." [Wikipedia:Cochlear_nuclei]
subset: uberon_slim
synonym: "cochlear nuclei" EXACT [FMA:72240]
synonym: "nuclei cochleares" RELATED LATIN [Wikipedia:Cochlear_nuclei]
xref: ABA:CN
xref: BM:Me-Co
xref: EV:0100260
xref: FMA:72240
xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png
xref: ncithesaurus:Cochlear_Nuclei
xref: NIF_GrossAnatomy:birnlex_1151
property_value: "spatially_disjoint_from" UBERON:0002126
property_value: "spatially_disjoint_from" UBERON:0002162
property_value: "spatially_disjoint_from" UBERON:0002591
property_value: "spatially_disjoint_from" UBERON:0002864
property_value: "spatially_disjoint_from" UBERON:0002866
property_value: "spatially_disjoint_from" UBERON:0002873
property_value: "spatially_disjoint_from" UBERON:0007633
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002611
name: node of ranvier
def: "." [Wikipedia:Node_of_ranvier]
comment: in GO
subset: uberon_slim
synonym: "ranvier node" EXACT [FMA:67368]
synonym: "ranvier's node" EXACT [FMA:67368]
is_obsolete: true
[Term]
id: UBERON:0002612
name: transverse orbital sulcus
synonym: "sulcus orbitalis transversus" EXACT [NIF_GrossAnatomy:birnlex_1155]
xref: FMA:83771
xref: NIF_GrossAnatomy:birnlex_1155
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002613
name: globose nucleus
def: "The globose nucleus is one of the deep cerebellar nuclei. It is located medial to the emboliform nucleus and lateral to the fastigial nucleus. This nucleus contains primarily large and small multipolar neurons. The globose nucleus and emboliform nucleus are occasionally referred to collectively as the interposed nucleus. [WP,unvetted]." [Wikipedia:Globose_nucleus]
subset: uberon_slim
synonym: "nucleus globosus" RELATED LATIN [Wikipedia:Globose_nucleus]
synonym: "nucleus interpositus posterior" EXACT [FMA:72536, FMA:TA]
synonym: "posterior interposed nucleus" EXACT [FMA:72536]
synonym: "posterior interpositus nucleus" EXACT [FMA:72536]
xref: FMA:72536
xref: http://upload.wikimedia.org/wikipedia/commons/2/23/Gray707.png
xref: NIF_GrossAnatomy:birnlex_1158
is_a: UBERON:0002946 ! regional part of cerebellum
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002614
name: medial part of ventral lateral nucleus
synonym: "nucleus ventralis lateralis thalami, pars medialis" EXACT [NIF_GrossAnatomy:birnlex_1159]
synonym: "nucleus ventrooralis medialis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1159]
synonym: "ventral lateral nucleus, medial part" EXACT [FMA:62195]
synonym: "ventral medial nucleus" EXACT [FMA:62195]
synonym: "ventral medial nucleus of thalamus" EXACT [NIF_GrossAnatomy:birnlex_1159]
xref: ABA:VM
xref: BM:Die-Th-VM
xref: FMA:62195
xref: NIF_GrossAnatomy:birnlex_1159
is_a: UBERON:0003528 ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002615
name: ventral tegmental decussation
synonym: "anterior tegmental decussation" EXACT [FMA:72452]
synonym: "decussatio tegmentalis anterior" EXACT [FMA:72452, FMA:TA]
synonym: "decussation of forel" EXACT []
synonym: "ventral tegmental decussation of forel" EXACT []
xref: FMA:72452
xref: NIF_GrossAnatomy:birnlex_1163
xref: SCTID:369249001
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0007418 ! decussation of neuraxis
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002616
name: regional part of brain
def: "A multi-tissue structure that is part of a brain [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "biological structure of brain" EXACT [OBOL:automatic]
synonym: "brain anatomical structure" EXACT [OBOL:automatic]
synonym: "brain biological structure" EXACT [OBOL:automatic]
synonym: "brain part" EXACT []
synonym: "neuraxis segment" EXACT [FMA:55676]
synonym: "segment of brain" EXACT [NIF_GrossAnatomy:birnlex_1167]
xref: FMA:55676
xref: ncithesaurus:Brain_Part
xref: NIF_GrossAnatomy:birnlex_1167
xref: SCTID:384763002
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0000955
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002617
name: pars postrema of ventral lateral nucleus
synonym: "nucleus dorsointermedius externus magnocellularis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1170]
synonym: "nucleus lateralis intermedius mediodorsalis situs postremus" EXACT [NIF_GrossAnatomy:birnlex_1170]
synonym: "nucleus ventralis lateralis thalami, pars postrema" EXACT [NIF_GrossAnatomy:birnlex_1170]
synonym: "posterodorsal part of ventral lateral posterior nucleus (jones)" EXACT []
synonym: "ventral lateral nucleus (pars postrema)" EXACT [FMA:62196]
xref: FMA:62196
xref: NIF_GrossAnatomy:birnlex_1170
is_a: UBERON:0003528 ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002618
name: trochlear nerve fibers
alt_id: UBERON:0002674
synonym: "central part of trochlear nerve" EXACT [FMA:71116]
synonym: "trochlear nerve fibers" EXACT [FMA:71116]
synonym: "trochlear nerve root" EXACT [FMA:71116]
synonym: "trochlear nerve tract" EXACT [FMA:71116]
xref: FMA:71116
xref: NIF_GrossAnatomy:birnlex_1172
is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve
[Term]
id: UBERON:0002619
name: regional part of cerebral cortex
alt_id: UBERON:0003208
def: "A regional part of brain that is part of a cerebral cortex [Obol]." [OBOL:automatic]
comment: todo - check MA term
synonym: "cerebral cortex part" EXACT []
synonym: "region of cerebral cortex" EXACT [FMA:242193]
synonym: "segment of cerebral cortex" NARROW [NIF_GrossAnatomy:birnlex_1173]
xref: FMA:242193
xref: MA:0000187
xref: NIF_GrossAnatomy:birnlex_1173
xref: SCTID:119408004
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0000956
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0000956 ! cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0002620
name: tuber cinereum
def: "The tuber cinereum is a hollow eminence of gray matter situated between the mammilary bodies and the optic chiasm. The tuber cinereum is part of the hypothalamus. [WP,unvetted]." [Wikipedia:Tuber_cinereum]
subset: uberon_slim
xref: FMA:62327
xref: GAID:649
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray724.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray724.png/200px-Gray724.png
xref: MESH:A.08.186.211.730.385.357.352.870
xref: ncithesaurus:Tuber_Cinereum
xref: NIF_GrossAnatomy:birnlex_1189
xref: SCTID:362381006
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002621
name: regional part of cochlear nuclear complex
def: "A regional part of brain that is part of a cochlear nuclear complex [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "biological structure of brain of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "biological structure of brain of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "brain biological structure of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "brain biological structure of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex biological structure of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex brain anatomical structure" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex brain biological structure" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex neuraxis segment" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex regional part of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex segment" EXACT [FMA:83952]
synonym: "cochlear nuclear complex segment of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclei anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclei biological structure of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclei brain anatomical structure" EXACT [OBOL:automatic]
synonym: "cochlear nuclei brain biological structure" EXACT [OBOL:automatic]
synonym: "cochlear nuclei neuraxis segment" EXACT [OBOL:automatic]
synonym: "cochlear nuclei regional part of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclei segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "neuraxis segment of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "regional part of brain of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "regional part of brain of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "segment of brain of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "segment of brain of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "segment of cochlear nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1195]
xref: FMA:83952
xref: NIF_GrossAnatomy:birnlex_1195
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0002610
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0002610 ! cochlear nuclear complex
relationship: part_of UBERON:0002610 ! cochlear nuclear complex
[Term]
id: UBERON:0002622
name: preoptic periventricular nucleus
def: "The preoptic periventricular nucleus is located along the midline and is medial to the medial preoptic nucleus.[WP,unvetted]." [Wikipedia:Preoptic_area#Preoptic_periventricular_nucleus]
synonym: "nucleus preopticus periventricularis" EXACT [FMA:62324, FMA:TA]
synonym: "periventricular preoptic nucleus" EXACT [FMA:62324]
synonym: "preoptic periventricular hypothalamic nucleus" EXACT [FMA:62324]
xref: FMA:62324
xref: NIF_GrossAnatomy:birnlex_1201
xref: SCTID:369127000
is_a: UBERON:0007251 ! preoptic nucleus
relationship: part_of UBERON:0001928 ! preoptic area
[Term]
id: UBERON:0002623
name: cerebral peduncle
def: "The cerebral peduncle, by most classifications, is everything in the mesencephalon except the tectum. The region includes the midbrain tegmentum, crus cerebri, substantia nigra and pretectum. By this definition, the cerebral peduncles are also known as the basis pedunculi, while the large ventral bundle of efferent fibers is referred to as the crus cerebri or the pes pedunculi There are numerous nerve tracts located within this section of the brainstem. Of note, in the cerebral peduncular loop fibers from motor areas of the brain project to the cerebral peduncle and then project to various thalamic nuclei. In as much as the peduncles are an anatomic landmark, for details regarding the function of this area interested readers are referred to the individual referenced articles. On a broad scale, though, this area contains many nerve tracts conveying motor information to and from the brain to the rest of the body. Important fibers running through the cerebral peduncles include the corticospinal tract and the corticobulbar tract, among others. [WP,unvetted]." [Wikipedia:Cerebral_peduncle]
subset: uberon_slim
synonym: "cerebral peduncle" EXACT [FMA:62394]
synonym: "peduncle of midbrain" EXACT [FMA:62394]
synonym: "pedunculus cerebri" EXACT [FMA:62394, FMA:TA]
synonym: "pedunculus cerebri" RELATED LATIN [Wikipedia:Cerebral_peduncle]
xref: BM:CP
xref: BTO:0004676
xref: EFO:0001987
xref: FMA:62394
xref: http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray689.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray689.png/200px-Gray689.png
xref: ncithesaurus:Cerebral_Peduncle
xref: NIF_GrossAnatomy:birnlex_1202
xref: SCTID:362391000
is_a: UBERON:0007417 {source="FMA"} ! peduncle of neuraxis
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_part UBERON:0001943 ! midbrain tegmentum
relationship: has_part UBERON:0002038 ! substantia nigra
[Term]
id: UBERON:0002624
name: orbital part of inferior frontal gyrus
synonym: "inferior frontal gyrus, orbital part" EXACT [FMA:61982]
synonym: "pars orbitalis gyri frontalis inferioris" EXACT [NIF_GrossAnatomy:birnlex_1207]
xref: FMA:61982
xref: ncithesaurus:Orbital_Part_of_the_Inferior_Frontal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1207
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002625
name: median preoptic nucleus
def: "The median preoptic nucleus is located along the midline in a position significantly dorsal to the other 3 preoptic nuclei, at least in the macaca fascicularis brain. It wraps around the top (dorsal), front, and bottom (ventral) surfaces of the anterior commissure. The median preoptic nucleus generates thirst. Drinking decreases noradrenaline release in the median preoptic nucleus." [Wikipedia:Preoptic_area#Median_preoptic_nucleus]
subset: uberon_slim
xref: ABA:MEPO
xref: BM:MPO
xref: FMA:62323
xref: NIF_GrossAnatomy:birnlex_1208
property_value: "spatially_disjoint_from" UBERON:0001934
property_value: "spatially_disjoint_from" UBERON:0002034
property_value: "spatially_disjoint_from" UBERON:0002219
property_value: "spatially_disjoint_from" UBERON:0002689
property_value: "spatially_disjoint_from" UBERON:0002690
property_value: "spatially_disjoint_from" UBERON:0007626
is_a: UBERON:0007251 ! preoptic nucleus
relationship: part_of UBERON:0001928 ! preoptic area
[Term]
id: UBERON:0002626
name: head of caudate nucleus
synonym: "caput (caudatus)" EXACT [FMA:61852]
synonym: "caudate nuclear head" EXACT [FMA:61852]
xref: EMAPA:18547
xref: FMA:61852
xref: NIF_GrossAnatomy:birnlex_1212
xref: SCTID:279298007
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0001873 ! caudate nucleus
[Term]
id: UBERON:0002627
name: capsule of medial geniculate body
synonym: "capsula corporis geniculati medialis" EXACT [NIF_GrossAnatomy:birnlex_1214]
synonym: "medial geniculate body capsule" EXACT [FMA:62049]
xref: FMA:62049
xref: NIF_GrossAnatomy:birnlex_1214
is_a: UBERON:0003931 ! diencephalic white matter
relationship: part_of UBERON:0001927 ! medial geniculate body
[Term]
id: UBERON:0002628
name: tail of caudate nucleus
synonym: "caudate nuclear tail" EXACT [FMA:61854]
xref: EMAPA:18548
xref: FMA:61854
xref: NIF_GrossAnatomy:birnlex_1215
xref: SCTID:279299004
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0001873 ! caudate nucleus
[Term]
id: UBERON:0002629
name: triangular part of inferior frontal gyrus
synonym: "pars triangularis gyri frontalis inferioris" EXACT [NIF_GrossAnatomy:birnlex_1216]
xref: FMA:61980
xref: ncithesaurus:Triangular_Part_of_the_Inferior_Frontal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1216
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002630
name: body of caudate nucleus
synonym: "caudate nuclear body" EXACT [FMA:61853]
synonym: "corpus (caudatus)" EXACT [FMA:61853]
xref: FMA:61853
xref: NIF_GrossAnatomy:birnlex_1217
xref: SCTID:314175006
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0001873 ! caudate nucleus
[Term]
id: UBERON:0002631
name: cerebral crus
def: "The cerebral crus is the anterior portion of the cerebral peduncle which contains the motor tracts, the plural of which is cerebral crura. In some older texts, it is used as a synonym for the entire cerebral peduncle, not just the anterior portion of it. [WP,unvetted]." [Wikipedia:Cerebral_crus]
subset: uberon_slim
synonym: "base of cerebral peduncle" RELATED [BTO:0004677]
synonym: "cerebral peduncle (clinical definition)" EXACT [FMA:72464]
synonym: "crus cerebri" EXACT [EV:0100243]
synonym: "crus cerebri" RELATED LATIN [Wikipedia:Cerebral_crus]
synonym: "crus cerebri" RELATED [BTO:0004677]
xref: BTO:0004677
xref: EV:0100243
xref: FMA:72464
xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png
xref: ncithesaurus:Crus_Cerebri
xref: NIF_GrossAnatomy:birnlex_1218
is_a: UBERON:0002316 ! white matter
relationship: part_of UBERON:0002623 {source="BTO"} ! cerebral peduncle
[Term]
id: UBERON:0002632
name: medial part of medial mammillary nucleus
synonym: "medial mammillary nucleus (carpenter)" EXACT []
synonym: "medial mammillary nucleus, medial part" EXACT [FMA:62345]
synonym: "medial mammillary nucleus, median part" EXACT [FMA:62345]
synonym: "medial subdivision of medial mammillary nucleus" EXACT [FMA:62345]
xref: ABA:Mmme
xref: FMA:62345
xref: NIF_GrossAnatomy:birnlex_1220
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002633
name: motor nucleus of trigeminal nerve
def: "The trigeminal motor nucleus contains motor neurons that innervate muscles of the first branchial arch, namely the muscles of mastication, the tensor tympani, tensor veli palatini, mylohyoid, and anterior belly of the digastric." [Wikipedia:Trigeminal_motor_nucleus]
comment: note this in ZFA this is part of the medulla; pons is a dubious structure for zebrafish
subset: vertebrate_core
synonym: "motor nucleus of cranial nerve v" EXACT []
synonym: "motor nucleus of trigeminal nerve" EXACT [FMA:54562]
synonym: "motor nucleus V" EXACT [ZFA:0001365]
synonym: "motor trigeminal nucleus" EXACT [BTO:0001075]
synonym: "nucleus motorius nervi trigemini" EXACT [FMA:54562, FMA:TA]
synonym: "nucleus motorius nervi trigemini" RELATED LATIN [Wikipedia:Trigeminal_motor_nucleus]
synonym: "nV" EXACT [ZFA:0001365]
synonym: "trigeminal motor nucleus" EXACT [ZFA:0001365]
synonym: "trigeminal V motor nucleus" EXACT [MA:0001029]
xref: ABA:V
xref: BM:Vm
xref: BTO:0001075
xref: EV:0100273
xref: FMA:54562
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0001029
xref: ncithesaurus:Motor_Nucleus_of_the_Trigeminal_Nerve
xref: NIF_GrossAnatomy:birnlex_1222
xref: SCTID:38390003
xref: TAO:0001365
xref: VHOG:0001355
xref: ZFA:0001365
property_value: "spatially_disjoint_from" UBERON:0002143
property_value: "spatially_disjoint_from" UBERON:0002147
property_value: "spatially_disjoint_from" UBERON:0002149
property_value: "spatially_disjoint_from" UBERON:0002151
property_value: "spatially_disjoint_from" UBERON:0002682
property_value: "spatially_disjoint_from" UBERON:0002963
property_value: "spatially_disjoint_from" UBERON:0002968
property_value: "spatially_disjoint_from" UBERON:0003011
property_value: "spatially_disjoint_from" UBERON:0007632
is_a: UBERON:0000126 {source="FMA"} ! cranial nerve nucleus
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0002925 ! trigeminal nucleus
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0000988 {source="ABA"} ! pons
relationship: part_of UBERON:0002925 {source="MA"} ! trigeminal nucleus
relationship: part_of UBERON:0003023 {source="NIF"} ! pontine tegmentum
[Term]
id: UBERON:0002634
name: anterior nucleus of hypothalamus
def: "The Anterior hypothalamic nucleus is a nucleus of the hypothalamus. Its function is thermoregulation (the maintenance of body temperature between certain parameters) of the body. [WP,unvetted]." [Wikipedia:Anterior_hypothalamic_nucleus]
subset: uberon_slim
synonym: "anterior hypothalamic area" EXACT [FMA:62319]
synonym: "anterior hypothalamic nucleus" EXACT [FMA:62319]
synonym: "area hypothalamica rostralis" EXACT [FMA:62319, FMA:TA]
synonym: "fundamental gray substance" EXACT [FMA:62319]
synonym: "nucleus anterior hypothalami" RELATED LATIN [Wikipedia:Anterior_hypothalamic_nucleus]
synonym: "nucleus anterior hypothalami" RELATED [BTO:0002450]
synonym: "parvocellular nucleus of hypothalamus" EXACT [FMA:62319]
xref: ABA:AHN
xref: BM:Die-Hy-HAA
xref: BTO:0002450
xref: EV:0100231
xref: FMA:62319
xref: GAID:642
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/HypothalamicNuclei.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MESH:A.08.186.211.730.385.357.342.063
xref: NIF_GrossAnatomy:birnlex_1226
xref: SCTID:369133009
property_value: "spatially_disjoint_from" UBERON:0001935
property_value: "spatially_disjoint_from" UBERON:0002035
property_value: "spatially_disjoint_from" UBERON:0002206
property_value: "spatially_disjoint_from" UBERON:0002706
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007251 ! preoptic nucleus
relationship: part_of UBERON:0001928 ! preoptic area
[Term]
id: UBERON:0002635
name: regional part of midbrain tegmentum
synonym: "midbrain tegmentum segment" EXACT [FMA:62399]
synonym: "segment of midbrain tegmentum" EXACT [NIF_GrossAnatomy:birnlex_1227]
xref: FMA:62399
xref: NIF_GrossAnatomy:birnlex_1227
is_a: UBERON:0002950 ! regional part of midbrain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001943
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001943 ! midbrain tegmentum
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002636
name: lateral pulvinar nucleus
synonym: "lateral pulvinar nucleus of thalamus" EXACT [FMA:62181]
synonym: "nucleus pulvinaris lateralis" EXACT [NIF_GrossAnatomy:birnlex_1228]
synonym: "nucleus pulvinaris lateralis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1228]
synonym: "nucleus pulvinaris lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1228]
synonym: "nucleus pulvinaris thalami, pars lateralis" EXACT [NIF_GrossAnatomy:birnlex_1228]
xref: BM:Die-Th-Pl-Pll
xref: FMA:62181
xref: NIF_GrossAnatomy:birnlex_1228
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002637
name: ventral anterior nucleus
def: "The ventral anterior nucleus is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_anterior_nucleus]
subset: uberon_slim
synonym: "nucleus lateropolaris" EXACT [NIF_GrossAnatomy:birnlex_1232]
synonym: "nucleus ventralis anterior" EXACT [NIF_GrossAnatomy:birnlex_1232]
synonym: "nucleus ventralis anterior thalami" EXACT [NIF_GrossAnatomy:birnlex_1232]
synonym: "nucleus ventralis anterior thalami" RELATED LATIN [Wikipedia:Ventral_anterior_nucleus]
synonym: "nucleus ventralis thalami anterior" EXACT [NIF_GrossAnatomy:birnlex_1232]
synonym: "ventral anterior nucleus of thalamus" EXACT [FMA:62184]
synonym: "ventral anterior thalamic nucleus" EXACT [FMA:62184]
synonym: "ventroanterior nucleus of the thalamus" EXACT []
synonym: "ventroanterior thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1232]
xref: BM:Die-Th-VA
xref: BTO:0002468
xref: EV:0100199
xref: FMA:62184
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: ncithesaurus:Ventroanterior_Nucleus_of_the_Thalamus
xref: NIF_GrossAnatomy:birnlex_1232
xref: SCTID:279131008
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002638
name: medial pulvinar nucleus
synonym: "nucleus pulvinaris medialis" EXACT [NIF_GrossAnatomy:birnlex_1233]
synonym: "nucleus pulvinaris medialis thalami" EXACT [NIF_GrossAnatomy:birnlex_1233]
synonym: "nucleus pulvinaris thalami, pars medialis" EXACT [NIF_GrossAnatomy:birnlex_1233]
xref: BM:Die-Th-Pl-Plm
xref: FMA:62182
xref: NIF_GrossAnatomy:birnlex_1233
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002639
name: midbrain reticular formation
synonym: "reticular formation of midbrain" EXACT [FMA:62406]
synonym: "tegmental reticular formation" EXACT [FMA:62406]
xref: BM:MB-MBRF
xref: FMA:62406
xref: NIF_GrossAnatomy:birnlex_1235
xref: SCTID:369234009
is_a: UBERON:0002275 ! reticular formation
is_a: UBERON:0002635 ! regional part of midbrain tegmentum
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002275 ! reticular formation
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: has_part UBERON:0002142 ! pedunculopontine tegmental nucleus
relationship: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002640
name: cuneocerebellar tract
def: "The posterior external arcuate fibers (dorsal external arcuate fibers) take origin in the gracile and cuneate nuclei; they pass to the inferior peduncle of the same side. It is uncertain whether fibers are continued directly from the gracile and cuneate fasciculi into the inferior peduncle. The term 'cuneocerebellar tract' is sometimes used to collectively refer to the posterior external arcuate fibers. [WP,unvetted]." [Wikipedia:Cuneocerebellar_tract]
subset: uberon_slim
synonym: "cuneocerebellar fibers" EXACT [NIF_GrossAnatomy:birnlex_1238]
xref: FMA:72637
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/98/Gray699.png/200px-Gray699.png
xref: NIF_GrossAnatomy:birnlex_1238
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002641
name: oral pulvinar nucleus
synonym: "anterior pulvinar nucleus" EXACT [FMA:62180]
synonym: "nucleus pulvinaris anterior" EXACT [FMA:62180, FMA:TA]
synonym: "nucleus pulvinaris oralis" EXACT [NIF_GrossAnatomy:birnlex_1239]
synonym: "nucleus pulvinaris oralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1239]
synonym: "oral nuclear group of pulvinar" EXACT [FMA:62180]
synonym: "oral part of pulvinar" EXACT [FMA:62180]
synonym: "oral portion of pulvinar" EXACT [FMA:62180]
xref: BM:Die-Th-Pl-Pla
xref: FMA:62180
xref: NIF_GrossAnatomy:birnlex_1239
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002642
name: cuneate fasciculus of medulla
comment: TODO - change definition to be the *whole* of the CF in the MO. isa parentage to fasciculus of brain should be inferred
xref: FMA:72623
xref: NIF_GrossAnatomy:birnlex_1242
is_a: UBERON:0005832 ! cuneate fasciculus
is_a: UBERON:0005838 ! fasciculus of brain
is_a: UBERON:0007702 ! tract of brain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896
intersection_of: UBERON:0005832 ! cuneate fasciculus
intersection_of: part_of UBERON:0001896 ! medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002643
name: decussation of medial lemniscus
def: "The sensory decussation or decussation of the lemniscus is a decussation or cross over of axons from the gracile nucleus and cuneate nucleus. The fibres of this decussation are called the internal arcuate fibres and are found at the superior aspect of the closed medulla superior to the motor decussation. It is part of the second neuron in the Posterior column-medial lemniscus pathway. [WP,unvetted]." [Wikipedia:Sensory_decussation]
subset: uberon_slim
synonym: "decussatio lemnisci medialis" RELATED LATIN [Wikipedia:Sensory_decussation]
synonym: "decussation of lemnisci" EXACT [FMA:72622]
synonym: "decussation of lemniscus" EXACT [FMA:72622]
synonym: "decussation of medial lemnisci" EXACT [FMA:72622]
synonym: "medial lemniscus decussation" EXACT [FMA:72622]
synonym: "medullary sensory decussation" EXACT [FMA:72622]
synonym: "sensory decussation" EXACT [FMA:72622]
xref: BM:Me-LMX
xref: FMA:72622
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Gray759.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray759.png/200px-Gray759.png
xref: NIF_GrossAnatomy:birnlex_1245
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0007418 ! decussation of neuraxis
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002644
name: intermediate orbital gyrus
xref: FMA:80183
xref: NIF_GrossAnatomy:birnlex_1247
is_a: UBERON:0007193 ! orbital gyrus
[Term]
id: UBERON:0002645
name: densocellular part of medial dorsal nucleus
synonym: "nucleus medialis dorsalis paralamellaris (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1255]
synonym: "nucleus medialis dorsalis, pars densocellularis" EXACT [NIF_GrossAnatomy:birnlex_1255]
xref: FMA:62163
xref: NIF_GrossAnatomy:birnlex_1255
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002646
name: dorsal longitudinal fasciculus of medulla
def: "A dorsal longitudinal fasciculus that is part of a medulla [Obol]." [OBOL:automatic]
synonym: "bundle of Schutz of medulla" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of medulla" EXACT [OBOL:automatic]
synonym: "medulla bundle of Schutz" EXACT [OBOL:automatic]
synonym: "medulla dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "medulla fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "medulla posterior longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of medulla" EXACT [OBOL:automatic]
xref: FMA:72617
xref: NIF_GrossAnatomy:birnlex_1257
is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0000958
intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: part_of UBERON:0000958 ! medulla
relationship: part_of UBERON:0000958 ! medulla
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002647
name: magnocellular part of medial dorsal nucleus
synonym: "dorsomedial thalamic nucleus, magnocellular part" EXACT [FMA:62161]
synonym: "magnocellular mediodorsal nucleus" EXACT [FMA:62161]
synonym: "magnocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62161]
synonym: "magnocellular part of dorsomedial nucleus" EXACT [FMA:62161]
synonym: "magnocellular part of mediodorsal nucleus" EXACT [NIF_GrossAnatomy:birnlex_1262]
synonym: "nucleus medialis dorsalis, pars magnocellularis" EXACT [NIF_GrossAnatomy:birnlex_1262]
synonym: "nucleus medialis fibrosus" EXACT [NIF_GrossAnatomy:birnlex_1262]
synonym: "nucleus medialis fibrosus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1262]
synonym: "pars magnocellularis nuclei mediodorsalis thalami" EXACT [FMA:62161, FMA:TA]
xref: FMA:62161
xref: NIF_GrossAnatomy:birnlex_1262
is_a: UBERON:0003528 ! brain grey matter
relationship: part_of UBERON:0002739 {source="FMA"} ! medial dorsal nucleus
[Term]
id: UBERON:0002648
name: anterior median eminence
xref: FMA:74870
xref: NIF_GrossAnatomy:birnlex_1264
is_a: UBERON:0002784 ! regional part of diencephalon
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002197 ! median eminence of neurohypophysis
[Term]
id: UBERON:0002649
name: dorsolateral fasciculus of medulla
def: "." [Wikipedia:Lissauer's_tract]
subset: uberon_slim
synonym: "dorsolateral tract" EXACT [FMA:72616]
synonym: "lissauer's tract" EXACT [FMA:72616]
synonym: "posterolateral fasciculus" EXACT [FMA:72616]
synonym: "posterolateral tract" EXACT [FMA:72616]
synonym: "tract of lissauer" EXACT []
synonym: "tractus posterolateralis" EXACT [FMA:72616, FMA:TA]
synonym: "zone of lissauer" EXACT []
xref: FMA:72616
xref: ncithesaurus:Tract_of_Lissauer
xref: NIF_GrossAnatomy:birnlex_1267
xref: SCTID:369287009
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002650
name: paralaminar part of medial dorsal nucleus
synonym: "dorsomedial thalamic nucleus, paralaminar part" EXACT [FMA:62160]
synonym: "mediodorsal thalamic nucleus, paralaminar part" EXACT [NIF_GrossAnatomy:birnlex_1276]
synonym: "nucleus medialis dorsalis caudalis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1276]
synonym: "nucleus medialis dorsalis thalami, pars multiformis" EXACT [NIF_GrossAnatomy:birnlex_1276]
synonym: "nucleus medialis dorsalis, pars multiformis" EXACT [NIF_GrossAnatomy:birnlex_1276]
synonym: "nucleus medialis dorsalis, pars paralaminaris" EXACT [NIF_GrossAnatomy:birnlex_1276]
synonym: "paralaminar part of dorsomedial nucleus" EXACT [FMA:62160]
synonym: "paralaminar part of medial dorsal nucleus of thalamus" EXACT [FMA:62160]
synonym: "pars paralaminaris nuclei mediodorsalis thalami" EXACT [FMA:62160, FMA:TA]
synonym: "pars paralaminaris of medial dorsal nucleus of thalamus" EXACT [FMA:62160]
synonym: "ventral mediodorsal nucleus" EXACT [FMA:62160]
xref: FMA:62160
xref: NIF_GrossAnatomy:birnlex_1276
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002651
name: anterior horn of lateral ventricle
def: "The anterior cornu (frontal horn, anterior horn; precornu) of the lateral ventricle passes forward and lateralward, with a slight inclination downward, from the interventricular foramen into the frontal lobe, curving around the anterior end of the caudate nucleus. Its floor is formed by the upper surface of the reflected portion of the corpus callosum, the rostrum. It is bounded medially by the anterior portion of the septum pellucidum, and laterally by the head of the caudate nucleus. Its apex reaches the posterior surface of the genu of the corpus callosum. [WP,unvetted]." [Wikipedia:Anterior_horn_of_lateral_ventricle]
subset: uberon_slim
synonym: "anterior horn of lateral ventricle" EXACT [FMA:74520]
synonym: "cornu anterius" RELATED LATIN [Wikipedia:Anterior_horn_of_lateral_ventricle]
synonym: "cornu anterius ventriculi lateralis" EXACT [FMA:74520, FMA:TA]
synonym: "frontal horn of lateral ventricle" EXACT [FMA:74520]
xref: FMA:74520
xref: http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray735.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray735.png/200px-Gray735.png
xref: ncithesaurus:Frontal_Horn_of_the_Lateral_Ventricle
xref: NIF_GrossAnatomy:birnlex_1279
xref: SCTID:279247001
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0002652
name: posterior median eminence
xref: FMA:74875
xref: NIF_GrossAnatomy:birnlex_1280
is_a: UBERON:0002784 ! regional part of diencephalon
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002197 ! median eminence of neurohypophysis
[Term]
id: UBERON:0002653
name: gracile fasciculus of medulla
synonym: "column of goll" EXACT []
synonym: "fasciculus of goll" EXACT []
synonym: "goll's tract" EXACT [FMA:72624]
synonym: "gracile fascicle (gall)" EXACT [NIF_GrossAnatomy:birnlex_1282]
synonym: "gracile fascicle of medulla" EXACT [FMA:72624]
synonym: "medulla segment of fasciculus gracilis" EXACT [FMA:72624]
synonym: "medulla segment of gracile fasciculus" EXACT [FMA:72624]
synonym: "tract of gall" EXACT []
xref: FMA:72624
xref: NIF_GrossAnatomy:birnlex_1282
is_a: UBERON:0005821 ! gracile fasciculus
is_a: UBERON:0005838 ! fasciculus of brain
is_a: UBERON:0007702 ! tract of brain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896
intersection_of: UBERON:0005821 ! gracile fasciculus
intersection_of: part_of UBERON:0001896 ! medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002654
name: parvicellular part of medial dorsal nucleus
synonym: "dorsomedial thalamic nucleus, parvicellular part" EXACT [FMA:62162]
synonym: "lateral mediodorsal nucleus" EXACT [FMA:62162]
synonym: "lateral nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162]
synonym: "mediodorsal thalamic nucleus, pars fasciculosa" EXACT [NIF_GrossAnatomy:birnlex_1283]
synonym: "nucleus medialis dorsalis fasciculosis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1283]
synonym: "nucleus medialis dorsalis nucleus fasciculosis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1283]
synonym: "nucleus medialis dorsalis, pars parvicellularis" EXACT [NIF_GrossAnatomy:birnlex_1283]
synonym: "pars parvocellularis lateralis nuclei mediodorsalis thalami" EXACT [FMA:62162, FMA:TA]
synonym: "pars principalis nuclei ventralis anterior thalami" EXACT [FMA:62162, FMA:TA]
synonym: "parvicellular part of dorsomedial nucleus" EXACT [FMA:62162]
synonym: "parvocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162]
synonym: "principal division of ventral anterior nucleus of thalamus" EXACT [FMA:62162]
xref: FMA:62162
xref: NIF_GrossAnatomy:birnlex_1283
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002655
name: body of lateral ventricle
def: "The body of lateral ventricle (cella) extends from the interventricular foramen to the splenium of the corpus callosum. It is an irregularly curved cavity, triangular on transverse section, with a roof, a floor, and a medial wall. The roof is formed by the under surface of the corpus callosum; the floor by the following parts, enumerated in their order of position, from before backward: the caudate nucleus of the corpus striatum, the stria terminalis and the terminal vein, the lateral portion of the upper surface of the thalamus, the choroid plexus, and the lateral part of the fornix; the medial wall is the posterior part of the septum pellucidum, which separates it from the opposite ventricle. [WP,unvetted]." [Wikipedia:Body_of_lateral_ventricle]
subset: uberon_slim
synonym: "central part of lateral ventricle" EXACT [FMA:83703]
synonym: "lateral ventricular body" EXACT [FMA:83703]
synonym: "pars centralis ventriculi lateralis" EXACT [FMA:83703, FMA:TA]
synonym: "pars centralis ventriculi lateralis" RELATED LATIN [Wikipedia:Body_of_lateral_ventricle]
xref: FMA:83703
xref: http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray735.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray735.png/200px-Gray735.png
xref: ncithesaurus:Body_of_the_Lateral_Ventricle
xref: NIF_GrossAnatomy:birnlex_1287
xref: SCTID:279246005
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0002656
name: periamygdaloid area
synonym: "para-amygdaloid cortex" EXACT [FMA:62485]
synonym: "periamygdaloid cortex" EXACT [FMA:62485]
synonym: "periamygdaloid region" EXACT [FMA:62485]
synonym: "semilunar gyrus" EXACT [FMA:62485]
synonym: "ventral cortical nucleus of amygdala" EXACT [FMA:62485]
xref: BM:Tel-Cx-PAM
xref: FMA:62485
xref: NIF_GrossAnatomy:birnlex_1291
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002657
name: posterior parahippocampal gyrus
synonym: "parahippocampal gyrus (amaral)" EXACT []
synonym: "parahippocampal gyrus (insausti)" EXACT [NIF_GrossAnatomy:birnlex_1295]
xref: FMA:67966
xref: NIF_GrossAnatomy:birnlex_1295
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002658
name: medial lemniscus of midbrain
def: "A medial lemniscus that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "midbrain medial lemniscus" EXACT [OBOL:automatic]
xref: FMA:72461
xref: NIF_GrossAnatomy:birnlex_1296
is_a: UBERON:0002635 ! regional part of midbrain tegmentum
is_a: UBERON:0003002 ! medial lemniscus
relationship: part_of UBERON:0001891
intersection_of: UBERON:0003002 ! medial lemniscus
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002659
name: superior medullary velum
def: "The superior medullary velum (anterior medullary velum, valve of Vieussens) is a thin, transparent of white substance, which stretches between the superior cerebellar peduncles; on the dorsal surface of its lower half the folia and lingula are prolonged. It forms, together with the superior cerebellar peduncle, the roof of the upper part of the fourth ventricle; it is narrow above, where it passes beneath the inferior colliculi, and broader below, where it is continuous with the white substance of the superior vermis. A slightly elevated ridge, the fraenulum veli, descends upon its upper part from between the inferior colliculi, and on either side of this the trochlear nerve emerges. Blood is supplied by branches from the superior cerebellar artery. [WP,unvetted]." [Wikipedia:Superior_medullary_velum]
subset: uberon_slim
synonym: "anterior medullary velum" EXACT [FMA:74508]
synonym: "velum medullare superius" RELATED LATIN [Wikipedia:Superior_medullary_velum]
xref: FMA:74508
xref: http://upload.wikimedia.org/wikipedia/commons/9/9b/Gray701.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png
xref: NIF_GrossAnatomy:birnlex_1300
xref: SCTID:369269006
is_a: UBERON:0003035 ! regional part of cerebellar white matter
[Term]
id: UBERON:0002660
name: medial longitudinal fasciculus of midbrain
def: "A medial longitudinal fasciculus that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "midbrain medial longitudinal fasciculus" EXACT [OBOL:automatic]
xref: FMA:72454
xref: NIF_GrossAnatomy:birnlex_1302
is_a: UBERON:0002309 ! medial longitudinal fasciculus
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002309 ! medial longitudinal fasciculus
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002661
name: superior frontal gyrus
def: "The superior frontal gyrus makes up about one-third of the frontal lobe of the human brain. It is bounded laterally by the superior frontal sulcus. The superior frontal gyrus, like the inferior frontal gyrus and the middle frontal gyrus, is more of a region than a true gyrus. [WP,unvetted]." [Wikipedia:Superior_frontal_gyrus]
subset: uberon_slim
synonym: "gyrus frontalis superior" RELATED LATIN [Wikipedia:Superior_frontal_gyrus]
synonym: "marginal gyrus" EXACT [FMA:61857]
synonym: "superior frontal convolution" EXACT [FMA:61857]
xref: BTO:0004836
xref: EFO:0001991
xref: FMA:61857
xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Superior_frontal_gyrus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Superior_frontal_gyrus.png/200px-Superior_frontal_gyrus.png
xref: ncithesaurus:Superior_Frontal_Convolution
xref: NIF_GrossAnatomy:birnlex_1303
xref: SCTID:279166005
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0001870 ! frontal cortex
[Term]
id: UBERON:0002662
name: medial pes lemniscus
synonym: "superficial pes lemniscus" EXACT [FMA:72460]
xref: FMA:72460
xref: NIF_GrossAnatomy:birnlex_1310
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002663
name: septal nuclear complex
def: "The septal nuclei are structures in the middle anteroventral cerebrum that are composed of medium-size neurons grouped into medial, lateral, and posterior groups. The septal nuclei receive reciprocal connections from the olfactory bulb, hippocampus, amygdala, hypothalamus, midbrain, habenula, cingulate gyrus, and thalamus. The septal nuclei play a role in reward and reinforcement along with the nucleus accumbens. In the 1950s, Olds & Milner showed that rats with electrodes implanted in this area will self-stimulate repeatedly in order to experience a euphoric feeling (i.e. press a bar to receive electrical current that will stimulate the neurons). [WP,unvetted]." [Wikipedia:Septal_nuclei]
comment: TODO - nucleus vs nuclear complex
subset: uberon_slim
synonym: "nuclei septales" RELATED LATIN [Wikipedia:Septal_nuclei]
synonym: "parolfactory nuclei" EXACT [FMA:61845]
synonym: "septal nuclei" EXACT [FMA:61845]
synonym: "septal nucleus" EXACT [MA:0002978]
xref: EHDAA2:0004709
xref: FMA:61845
xref: GAID:637
xref: MA:0002978
xref: MESH:A.08.186.211.577.750.800
xref: NIF_GrossAnatomy:birnlex_1313
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0000446 ! septum of telencephalon
[Term]
id: UBERON:0002664
name: lateral part of medial mammillary nucleus
synonym: "intercalated mammillary nucleus" EXACT [FMA:62346]
synonym: "intermediate mammillary nucleus" EXACT [FMA:62346]
synonym: "lateral mammillary nucleus (gagel)" EXACT []
synonym: "lateral subdivision of medial mammillary nucleus" EXACT [FMA:62346]
synonym: "medial mammillary nucleus, lateral part" EXACT [FMA:62346]
xref: FMA:62346
xref: NIF_GrossAnatomy:birnlex_1314
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002665
name: supracallosal gyrus
def: "The supracallosal gyrus (indusium griseum; gyrus epicallosus) consists of a thin layer of grey matter in contact with the dorsal surface of the corpus callosum and continuous laterally with the grey matter of the cingulate gyrus. It contains two longitudinally directed strands of fibers termed respectively the medial and lateral longitudinal striae. The supracallosal gyrus is prolonged around the splenium of the corpus callosum as a delicate lamina, the fasciola cinerea, which is continuous below with the fascia dentata hippocampi. [WP,unvetted]." [Wikipedia:Supracallosal_gyrus]
subset: uberon_slim
synonym: "supracommissural hippocampal rudiment" EXACT [FMA:61920]
synonym: "supracommissural hippocampus" EXACT [FMA:61920]
xref: BTO:0003738
xref: FMA:61920
xref: NIF_GrossAnatomy:birnlex_1316
xref: SCTID:369231001
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002666
name: mesencephalic tract of trigeminal nerve
synonym: "mesencephalic root of v" EXACT []
synonym: "mesencephalic trigeminal tract" EXACT [FMA:72489]
xref: FMA:72489
xref: NIF_GrossAnatomy:birnlex_1318
xref: SCTID:369263007
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002667
name: lateral septal nucleus
synonym: "lateral parolfactory nucleus" EXACT [FMA:61878]
synonym: "lateral septal nucleus (cajal)" EXACT [NIF_GrossAnatomy:birnlex_1321]
synonym: "lateral septum" EXACT [NIF_GrossAnatomy:birnlex_1321]
synonym: "lateral septum nucleus" EXACT [NIF_GrossAnatomy:birnlex_1321]
xref: ABA:LS
xref: BM:Tel-Spt-SLN
xref: FMA:61878
xref: NIF_GrossAnatomy:birnlex_1321
property_value: "spatially_disjoint_from" UBERON:0001878
property_value: "spatially_disjoint_from" UBERON:0007630
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002668
name: oculomotor nerve fibers
comment: todo - make subclass of root of cranial nerve
synonym: "central part of oculomotor nerve" EXACT [FMA:72457]
synonym: "oculomotor nerve fibers" EXACT [FMA:72457]
synonym: "root of oculomotor nerve" EXACT [FMA:72457]
xref: FMA:72457
xref: NIF_GrossAnatomy:birnlex_1323
is_a: UBERON:0002211 ! nerve root
is_a: UBERON:0004732 ! segmental subdivision of nervous system
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002669
name: anterior horizontal limb of lateral sulcus
synonym: "anterior branch of lateral sulcus" EXACT [FMA:83760]
synonym: "anterior horizontal limb of lateral fissure" EXACT [FMA:83760]
synonym: "anterior horizontal ramus of lateral fissure" EXACT [FMA:83760]
synonym: "anterior ramus of lateral cerebral sulcus" EXACT [FMA:83760]
synonym: "horizontal limb of lateral fissure" EXACT [FMA:83760]
synonym: "horizontal ramus of sylvian fissure" EXACT []
synonym: "ramus anterior sulci lateralis cerebri" EXACT [FMA:83760, FMA:TA]
xref: FMA:83760
xref: NIF_GrossAnatomy:birnlex_1327
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002670
name: anterior ascending limb of lateral sulcus
synonym: "anterior ascending limb of lateral fissure" EXACT [FMA:83759]
synonym: "anterior ascending ramus of lateral sulcus" EXACT [FMA:83759]
synonym: "ascending branch of lateral sulcus" EXACT [FMA:83759]
synonym: "ascending ramus of lateral cerebral sulcus" EXACT [FMA:83759]
synonym: "ascending ramus of sylvian fissure" EXACT []
synonym: "middle ramus of lateral fissure" EXACT [FMA:83759]
synonym: "ramus ascendens sulci lateralis cerebri" EXACT [FMA:83759, FMA:TA]
synonym: "superior branch of lateral fissure" EXACT [FMA:83759]
xref: FMA:83759
xref: NIF_GrossAnatomy:birnlex_1330
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002671
name: pallidotegmental fasciculus
synonym: "pallidotegmental tract" EXACT [FMA:72458]
xref: FMA:72458
xref: NIF_GrossAnatomy:birnlex_1331
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002672
name: anterior subcentral sulcus
xref: FMA:83765
xref: NIF_GrossAnatomy:birnlex_1332
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002673
name: vestibular nuclear complex
def: "The vestibular nuclei are the cranial nuclei for the vestibular nerve. [WP,unvetted]." [http://www.sciencedirect.com/science/article/pii/S0079612305510069, https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413105&group_id=36855, Wikipedia:Vestibular_nuclei]
comment: Editor notes: In TA they are grouped in both the pons and medulla; WP says the SVN is in the pons, and GO includes VNC development under pons development, but this is not supported by ABA. Todo - check with NIF
subset: uberon_slim
synonym: "nuclei vestibulares" RELATED LATIN [Wikipedia:Vestibular_nuclei]
synonym: "nuclei vestibulares in medulla oblongata" EXACT [FMA:72239, FMA:TA]
synonym: "vestibular nuclei" EXACT [FMA:72239]
synonym: "vestibular nuclei in medulla oblongata" EXACT [FMA:72239]
synonym: "vestibular nucleus" RELATED [GO:0021750]
xref: ABA:VNC
xref: BM:Me-VS
xref: BTO:0004368
xref: EV:0100254
xref: FMA:72239
xref: GAID:602
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png
xref: MESH:A.08.186.211.132.810.428.600.800
xref: NIF_GrossAnatomy:birnlex_1337
property_value: "spatially_disjoint_from" UBERON:0001719
property_value: "spatially_disjoint_from" UBERON:0002127
property_value: "spatially_disjoint_from" UBERON:0002154
property_value: "spatially_disjoint_from" UBERON:0002155
property_value: "spatially_disjoint_from" UBERON:0002559
property_value: "spatially_disjoint_from" UBERON:0002870
property_value: "spatially_disjoint_from" UBERON:0002871
property_value: "spatially_disjoint_from" UBERON:0002872
property_value: "spatially_disjoint_from" UBERON:0002877
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0001896 {source="FMA", source="NIF", source="ABA"} ! medulla oblongata
relationship: part_of UBERON:0004681 {source="Wikipedia:Vestibular_nuclei"} ! vestibular system
[Term]
id: UBERON:0002675
name: diagonal sulcus
xref: FMA:83758
xref: NIF_GrossAnatomy:birnlex_1344
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002676
name: ventral supraoptic decussation
def: "The ventral supraoptic decussation is the crossover point for signals from the left and right eye, en route respectively to the right and left sides of the visual cortex. Occupying the posterior part of the commissure of the optic chiasma is a strand of fibers, the Ventral supraoptic decussation (commissure of Gudden, Gudden's inferior commissure), which is not derived from the optic nerves; it forms a connecting link between the medial geniculate bodies. [WP,unvetted]." [Wikipedia:Ventral_supraoptic_decussation]
subset: uberon_slim
synonym: "commissura supraoptica ventralis" EXACT [FMA:62052, FMA:TA]
synonym: "commissura supraoptica ventralis" RELATED LATIN [Wikipedia:Ventral_supraoptic_decussation]
synonym: "commissure of Gudden" EXACT [NIF_GrossAnatomy:birnlex_1347]
synonym: "Gudden commissure" EXACT [FMA:62052]
synonym: "Gudden's commissure" EXACT [FMA:62052]
synonym: "supraoptic commissures, ventral" EXACT [FMA:62052]
synonym: "ventral supra-optic commissure" EXACT [FMA:62052]
synonym: "ventral supraoptic commissure (of Meynert)" EXACT [NIF_GrossAnatomy:birnlex_1347]
synonym: "ventral supraoptic decussation" EXACT [NIF_GrossAnatomy:birnlex_1347]
synonym: "von Gudden's commissure" EXACT [FMA:62052]
synonym: "VSOX" EXACT [NIF_GrossAnatomy:birnlex_1347]
xref: FMA:62052
xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png
xref: NIF_GrossAnatomy:birnlex_1347
is_a: UBERON:0011590 ! commissure of diencephalon
relationship: part_of UBERON:0002550 {source="FMA"} ! anterior hypothalamic region
[Term]
id: UBERON:0002677
name: regional part of medullary raphe nuclear complex
def: "A regional part of brain that is part of a medullary raphe nuclear complex [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "biological structure of brain of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "biological structure of brain of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain biological structure of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "brain biological structure of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "brain biological structure of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex biological structure of brain" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex brain biological structure" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex neuraxis segment" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex regional part of brain" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex segment" EXACT [FMA:83951]
synonym: "medullary raphe nuclear complex segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "neuraxis segment of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "neuraxis segment of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla biological structure of brain" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla brain anatomical structure" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla brain biological structure" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla neuraxis segment" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla regional part of brain" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla segment of brain" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata biological structure of brain" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata brain anatomical structure" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata brain biological structure" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata neuraxis segment" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata regional part of brain" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata segment of brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "regional part of brain of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "regional part of brain of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "segment of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "segment of brain of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "segment of brain of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "segment of medullary raphe nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1349]
xref: FMA:83951
xref: NIF_GrossAnatomy:birnlex_1349
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0002692
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0002692 ! medullary raphe nuclear complex
relationship: part_of UBERON:0002692 ! medullary raphe nuclear complex
[Term]
id: UBERON:0002678
name: regional part of medulla oblongata
def: "A regional part of brain that is part of a medulla oblongata [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of bulb" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of medulla oblongata" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of metepencephalon" EXACT [OBOL:automatic]
synonym: "biological structure of brain of bulb" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medulla oblongata" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "biological structure of brain of metepencephalon" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of bulb" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of metepencephalon" EXACT [OBOL:automatic]
synonym: "brain biological structure of bulb" EXACT [OBOL:automatic]
synonym: "brain biological structure of medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain biological structure of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "brain biological structure of metepencephalon" EXACT [OBOL:automatic]
synonym: "bulb anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "bulb biological structure of brain" EXACT [OBOL:automatic]
synonym: "bulb brain anatomical structure" EXACT [OBOL:automatic]
synonym: "bulb brain biological structure" EXACT [OBOL:automatic]
synonym: "bulb neuraxis segment" EXACT [OBOL:automatic]
synonym: "bulb regional part of brain" EXACT [OBOL:automatic]
synonym: "bulb segment of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata biological structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medulla oblongata brain biological structure" EXACT [OBOL:automatic]
synonym: "medulla oblongata neuraxis segment" EXACT [OBOL:automatic]
synonym: "medulla oblongata regional part of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata segment of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata biological structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata brain biological structure" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata neuraxis segment" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata regional part of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata segment of brain" EXACT [OBOL:automatic]
synonym: "medullary oblongata segment" EXACT [FMA:71011]
synonym: "metepencephalon anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon biological structure of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon brain anatomical structure" EXACT [OBOL:automatic]
synonym: "metepencephalon brain biological structure" EXACT [OBOL:automatic]
synonym: "metepencephalon neuraxis segment" EXACT [OBOL:automatic]
synonym: "metepencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of bulb" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medulla oblongata" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "neuraxis segment of metepencephalon" EXACT [OBOL:automatic]
synonym: "regional part of brain of bulb" EXACT [OBOL:automatic]
synonym: "regional part of brain of medulla oblongata" EXACT [OBOL:automatic]
synonym: "regional part of brain of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "regional part of brain of metepencephalon" EXACT [OBOL:automatic]
synonym: "segment of brain of bulb" EXACT [OBOL:automatic]
synonym: "segment of brain of medulla oblongata" EXACT [OBOL:automatic]
synonym: "segment of brain of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "segment of brain of metepencephalon" EXACT [OBOL:automatic]
synonym: "segment of medulla oblongata" EXACT [NIF_GrossAnatomy:birnlex_1355]
xref: FMA:71011
xref: NIF_GrossAnatomy:birnlex_1355
xref: SCTID:119241003
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001896 ! medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002679
name: anterodorsal nucleus
synonym: "anterodorsal nucleus of thalamus" EXACT [FMA:62141]
synonym: "anterodorsal nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_1358]
synonym: "anterodorsal thalamic nucleus" EXACT [FMA:62141]
synonym: "nucleus anterior dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1358]
synonym: "nucleus anterior dorsalis thalami" EXACT [NIF_GrossAnatomy:birnlex_1358]
synonym: "nucleus anterior thalami dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1358]
synonym: "nucleus anterodorsalis" EXACT [NIF_GrossAnatomy:birnlex_1358]
synonym: "nucleus anterodorsalis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1358]
synonym: "nucleus anterodorsalis thalami" EXACT [NIF_GrossAnatomy:birnlex_1358]
synonym: "nucleus anterosuperior" EXACT [NIF_GrossAnatomy:birnlex_1358]
synonym: "nucleus thalamicus anterodorsalis" EXACT [NIF_GrossAnatomy:birnlex_1358]
xref: ABA:AD
xref: BM:Die-Th-AD
xref: FMA:62141
xref: NIF_GrossAnatomy:birnlex_1358
xref: SCTID:279127002
property_value: "spatially_disjoint_from" UBERON:0002681
property_value: "spatially_disjoint_from" UBERON:0002685
property_value: "spatially_disjoint_from" UBERON:0002984
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002680
name: regional part of metencephalon
def: "A regional part of brain that is part of a metencephalon [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of epencephalon-2" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of metencephalon" EXACT [OBOL:automatic]
synonym: "biological structure of brain of epencephalon-2" EXACT [OBOL:automatic]
synonym: "biological structure of brain of metencephalon" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of epencephalon-2" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of metencephalon" EXACT [OBOL:automatic]
synonym: "brain biological structure of epencephalon-2" EXACT [OBOL:automatic]
synonym: "brain biological structure of metencephalon" EXACT [OBOL:automatic]
synonym: "epencephalon-2 anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-2 biological structure of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-2 brain anatomical structure" EXACT [OBOL:automatic]
synonym: "epencephalon-2 brain biological structure" EXACT [OBOL:automatic]
synonym: "epencephalon-2 neuraxis segment" EXACT [OBOL:automatic]
synonym: "epencephalon-2 regional part of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-2 segment of brain" EXACT [OBOL:automatic]
synonym: "metencephalon anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "metencephalon biological structure of brain" EXACT [OBOL:automatic]
synonym: "metencephalon brain anatomical structure" EXACT [OBOL:automatic]
synonym: "metencephalon brain biological structure" EXACT [OBOL:automatic]
synonym: "metencephalon neuraxis segment" EXACT [OBOL:automatic]
synonym: "metencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "metencephalon segment of brain" EXACT [OBOL:automatic]
synonym: "metencephalon subdivision" EXACT [FMA:67942]
synonym: "neuraxis segment of epencephalon-2" EXACT [OBOL:automatic]
synonym: "neuraxis segment of metencephalon" EXACT [OBOL:automatic]
synonym: "regional part of brain of epencephalon-2" EXACT [OBOL:automatic]
synonym: "regional part of brain of metencephalon" EXACT [OBOL:automatic]
synonym: "segment of brain of epencephalon-2" EXACT [OBOL:automatic]
synonym: "segment of brain of metencephalon" EXACT [OBOL:automatic]
synonym: "segment of metencephalon" EXACT [NIF_GrossAnatomy:birnlex_1361]
xref: FMA:67942
xref: NIF_GrossAnatomy:birnlex_1361
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001895
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001895 ! metencephalon
relationship: part_of UBERON:0001895 ! metencephalon
[Term]
id: UBERON:0002681
name: anteromedial nucleus
synonym: "anteromedial nucleus of thalamus" EXACT [FMA:62142]
synonym: "anteromedial nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_1365]
synonym: "anteromedial thalamic nucleus" EXACT [FMA:62142]
synonym: "nucleus anterior medialis" EXACT [NIF_GrossAnatomy:birnlex_1365]
synonym: "nucleus anterior medialis thalami" EXACT [NIF_GrossAnatomy:birnlex_1365]
synonym: "nucleus anterior thalami medialis" EXACT [NIF_GrossAnatomy:birnlex_1365]
synonym: "nucleus anteromedialis" EXACT [NIF_GrossAnatomy:birnlex_1365]
synonym: "nucleus anteromedialis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1365]
synonym: "nucleus anteromedialis thalami" EXACT [NIF_GrossAnatomy:birnlex_1365]
synonym: "nucleus thalamicus anteromedialis" EXACT [NIF_GrossAnatomy:birnlex_1365]
xref: ABA:AM
xref: BM:Die-AM
xref: FMA:62142
xref: NIF_GrossAnatomy:birnlex_1365
xref: SCTID:279128007
property_value: "spatially_disjoint_from" UBERON:0002679
property_value: "spatially_disjoint_from" UBERON:0002685
property_value: "spatially_disjoint_from" UBERON:0002984
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002682
name: abducens nucleus
def: "The abducens nucleus is the originating nucleus from which the abducens nerve emerges - a cranial nerve nucleus. This nucleus is located beneath the fourth ventricle in the caudal portion of the pons, medial to the sulcus limitans. The abducens nucleus along with the internal genu of the facial nerve make up the facial colliculus, a hump at the caudal end of the medial eminence on the dorsal aspect of the pons. [WP,unvetted]." [Wikipedia:Abducens_nucleus]
comment: part of medulla oblongata in ABA and ZFA; part of pons in MA and pontine tegmentum in NIF; note that pons/medulla are spatially disjoint in ABA.
subset: uberon_slim
subset: vertebrate_core
synonym: "abducens motor nucleus" EXACT [ZFA:0000713]
synonym: "abducens nerve nucleus" EXACT [FMA:54504]
synonym: "abducens VI nucleus" EXACT [MA:0001010]
synonym: "abducent nucleus" EXACT [FMA:54504]
synonym: "motor nucleus VI" EXACT [ZFA:0000713]
synonym: "nucleus nervi abducentis" EXACT [FMA:54504, FMA:TA]
synonym: "nucleus nervi abducentis" RELATED LATIN [Wikipedia:Abducens_nucleus]
synonym: "nucleus of abducens nerve" EXACT [FMA:54504]
synonym: "nucleus of abducens nerve (VI)" EXACT [FMA:54504]
synonym: "nVI" EXACT [ZFA:0000713]
synonym: "sixth cranial nerve nucleus" EXACT [FMA:54504]
xref: ABA:VI
xref: BM:Pons-VI
xref: EHDAA2:0004310
xref: EV:0100266
xref: FMA:54504
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0001010
xref: ncithesaurus:Abducens_Nucleus
xref: NIF_GrossAnatomy:birnlex_1366
xref: SCTID:280165008
xref: TAO:0000713
xref: ZFA:0000713
property_value: "spatially_disjoint_from" UBERON:0002143
property_value: "spatially_disjoint_from" UBERON:0002147
property_value: "spatially_disjoint_from" UBERON:0002149
property_value: "spatially_disjoint_from" UBERON:0002633
property_value: "spatially_disjoint_from" UBERON:0002963
property_value: "spatially_disjoint_from" UBERON:0003011
property_value: "spatially_disjoint_from" UBERON:0007632
property_value: UBPROP:0000001 "Hindbrain motor nucleus which is the origin of motor axons of cranial nerve VI. From Neuroanatomy of the Zebrafish Brain.[TAO]" xsd:string
is_a: UBERON:0000126 {source="FMA"} ! cranial nerve nucleus
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0000988 {conflicts="ZFA", conflicts="ABA", source="GO", source="NIF", source="MA"} ! pons
[Term]
id: UBERON:0002683
name: rhinal sulcus
def: "In the human brain, the rhinencephalon appears as a longitudinal elevation, with a corresponding internal furrow, on the under surface of the hemisphere close to the lamina terminalis; it is separated from the lateral surface of the hemisphere by a furrow, the external rhinal fissure (or rhinal sulcus), and is continuous behind with that part of the hemisphere, which will ultimately form the anterior end of the temporal lobe. [WP,unvetted]." [Wikipedia:Rhinal_sulcus]
subset: uberon_slim
synonym: "fissura rhinalis" EXACT [NIF_GrossAnatomy:birnlex_1368]
synonym: "rhinal fissuer (turner, rezius)" EXACT [NIF_GrossAnatomy:birnlex_1368]
synonym: "rhinal fissure" EXACT [FMA:83746]
synonym: "sulcus rhinalis" EXACT [NIF_GrossAnatomy:birnlex_1368]
synonym: "sulcus rhinalis; fissura rhinalis" RELATED LATIN [Wikipedia:Rhinal_sulcus]
xref: BM:Tel-Cx-RS
xref: FMA:83746
xref: http://upload.wikimedia.org/wikipedia/commons/c/ce/Gehirn\,_basal_-_beschriftet_lat.svg
xref: NIF_GrossAnatomy:birnlex_1368
xref: SCTID:279357002
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002684
name: nucleus raphe obscurus
def: "The raphe obscurus projects to the cerebellar lobes VI and VII and to crus II along with the nucleus raphe pontis . This so called obscure nucleus has also been implicated in the modulation of the hypoglossal nerve. It has been observed that the ablation of this nucleus causes a change in the firing pattern in the XII nerve . In addition, the raphe obscurus mediates expiration via the inhibitory effect of serotonin and depresses periodic synaptic potentials . It has also been shown that this nucleus stimulates gastrointestinal motor function; microinjections of 5-HT into the n.r. obscurus increase gastric movement . [WP,unvetted]." [Wikipedia:Nucleus_raphe_obscurus]
subset: uberon_slim
synonym: "nucleus raphes obscurus" EXACT [FMA:72585, FMA:TA]
synonym: "nucleus raphes obscurus" RELATED LATIN [Wikipedia:Nucleus_raphe_obscurus]
synonym: "obscurus raphe nucleus" EXACT [FMA:72585]
synonym: "raphe obscurus nucleus" EXACT [FMA:72585]
xref: ABA:RO
xref: FMA:72585
xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png
xref: MA:0002981
xref: NIF_GrossAnatomy:birnlex_1369
property_value: "spatially_disjoint_from" UBERON:0002156
property_value: "spatially_disjoint_from" UBERON:0002157
is_a: UBERON:0002677 ! regional part of medullary raphe nuclear complex
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0002692 {source="FMA"} ! medullary raphe nuclear complex
[Term]
id: UBERON:0002685
name: anteroventral nucleus
synonym: "anterior ventral nucleus of thalamus" EXACT [FMA:62143]
synonym: "anteroprincipal thalamic nucleus" EXACT [FMA:62143]
synonym: "anteroventral nucleus of thalamus" EXACT [FMA:62143]
synonym: "anteroventral nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_1372]
synonym: "anteroventral thalamic nucleus" EXACT [FMA:62143]
synonym: "nucleus anterior thalami ventralis" EXACT [NIF_GrossAnatomy:birnlex_1372]
synonym: "nucleus anterior ventralis" EXACT [NIF_GrossAnatomy:birnlex_1372]
synonym: "nucleus anteroinferior" EXACT [NIF_GrossAnatomy:birnlex_1372]
synonym: "nucleus anteroventralis" EXACT [NIF_GrossAnatomy:birnlex_1372]
synonym: "nucleus anteroventralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1372]
synonym: "nucleus thalamicus anteroprincipalis" EXACT [NIF_GrossAnatomy:birnlex_1372]
synonym: "nucleus thalamicus anteroventralis" EXACT [NIF_GrossAnatomy:birnlex_1372]
xref: ABA:AV
xref: BM:Die-AV
xref: EV:0100199
xref: FMA:62143
xref: NIF_GrossAnatomy:birnlex_1372
xref: SCTID:279130009
property_value: "spatially_disjoint_from" UBERON:0002679
property_value: "spatially_disjoint_from" UBERON:0002681
property_value: "spatially_disjoint_from" UBERON:0002984
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002686
name: angular gyrus
def: "The angular gyrus is a region of the brain in the parietal lobe, that lies near the superior edge of the temporal lobe, and immediately posterior to the supramarginal gyrus; it is involved in a number of processes related to language, mathematics and cognition. It is Brodmann area 39 of the human brain. [WP,unvetted]." [Wikipedia:Angular_gyrus]
subset: uberon_slim
synonym: "gyrus angularis" RELATED LATIN [Wikipedia:Angular_gyrus]
synonym: "middle part of inferior parietal lobule" EXACT [FMA:61898]
synonym: "preoccipital gyrus" EXACT [FMA:61898]
xref: FMA:61898
xref: http://upload.wikimedia.org/wikipedia/commons/8/86/Surfacegyri.JPG
xref: ncithesaurus:Angular_Gyrus
xref: NIF_GrossAnatomy:birnlex_1376
xref: SCTID:279186009
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0001872 ! parietal lobe
[Term]
id: UBERON:0002687
name: area x
synonym: "anteromedial part of ventral lateral posterior nucleus (jones)" EXACT []
synonym: "area x of olszewski" EXACT [NIF_GrossAnatomy:birnlex_1379]
synonym: "nucleus lateralis intermedius mediodorsalis situs ventralis medialis" EXACT [NIF_GrossAnatomy:birnlex_1379]
synonym: "nucleus ventralis oralis, pars posterior (dewulf)" EXACT [NIF_GrossAnatomy:birnlex_1379]
synonym: "nucleus ventrooralis internus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1379]
synonym: "nucleus ventrooralis internus, superior part" EXACT [NIF_GrossAnatomy:birnlex_1379]
xref: FMA:62198
xref: NIF_GrossAnatomy:birnlex_1379
is_a: UBERON:0003528 ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002688
name: supramarginal gyrus
def: "Brodmann area 40, or BA40, is part of the parietal cortex in the human brain. The inferior part of BA40 is in the area of the supramarginal gyrus, which lies at the posterior end of the lateral fissure, in the inferior lateral part of the parietal lobe. It is bounded approximately by the intraparietal sulcus, the inferior postcentral sulcus, the posterior subcentral sulcus and the lateral sulcus. Cytoarchitecturally it is bounded caudally by the angular area 39 (H), rostrally and dorsally by the caudal postcentral area 2, and ventrally by the subcentral area 43 and the superior temporal area 22 (Brodmann-1909). Cytoarchitectonically defined subregions of rostral BA40/the supramarginal gyrus are PF, PFcm, PFm, PFop, and PFt. Area PF is the homologue to macaque area PF, part of the mirror neuron system, and active in humans during imitation. The supramarginal gyrus part of Brodmann area 40 is the region in the inferior parietal lobe that is involved in reading both in regards to meaning and phonology. [WP,unvetted]." [Wikipedia:Supramarginal_gyrus]
subset: uberon_slim
synonym: "anterior part of inferior parietal lobule" EXACT [FMA:61897]
synonym: "Brodmann area 40" EXACT [Wikipedia:Supramarginal_gyrus]
synonym: "inferior parietal lobule (krieg)" EXACT []
xref: FMA:61897
xref: http://upload.wikimedia.org/wikipedia/commons/e/ec/Gehirn\,_lateral_-_Hauptgyri_beschriftet.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg/200px-Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg.png
xref: ncithesaurus:Supramarginal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1381
xref: SCTID:279185008
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0001872 ! parietal lobe
[Term]
id: UBERON:0002689
name: supraoptic crest
def: "one of the circumventricular organs of the brain. The OVLT is outside the blood brain barrier, and so neurons in this region can respond to factors that are present in the systemic circulation." [https://sourceforge.net/tracker/?func=detail&aid=3474225&group_id=76834&atid=1205376, Wikipedia:Organum_vasculosum_of_the_lamina_terminalis]
comment: AO notes: NIF has two classes here
synonym: "organum vasculosum lamina terminalis" EXACT [NIF_GrossAnatomy:nlx_anat_100313]
synonym: "organum vasculosum laminae terminalis" EXACT [FMA:TA]
synonym: "organum vasculosum laminae terminalis" EXACT [FMA:62315, FMA:TA]
synonym: "prechiasmatic gland" EXACT [NIF_GrossAnatomy:birnlex_1400]
synonym: "vascular organ of lamina terminalis" EXACT [FMA:62315]
xref: ABA:OV
xref: FMA:62315
xref: NIF_GrossAnatomy:birnlex_1400
xref: NIF_GrossAnatomy:nlx_anat_100313
property_value: "spatially_disjoint_from" UBERON:0001934
property_value: "spatially_disjoint_from" UBERON:0002034
property_value: "spatially_disjoint_from" UBERON:0002219
property_value: "spatially_disjoint_from" UBERON:0002625
property_value: "spatially_disjoint_from" UBERON:0002690
property_value: "spatially_disjoint_from" UBERON:0007626
is_a: UBERON:0003048 ! regional part of hypothalamus
is_a: UBERON:0010135 {source="MA-moved"} ! sensory circumventricular organ
relationship: part_of UBERON:0002550 {source="FMA"} ! anterior hypothalamic region
relationship: superficial_to UBERON:0000201 {source="Wikipedia"} ! endothelial blood brain barrier
[Term]
id: UBERON:0002690
name: anteroventral periventricular nucleus
xref: ABA:AVPV
xref: FMA:62314
xref: NIF_GrossAnatomy:birnlex_1401
property_value: "spatially_disjoint_from" UBERON:0001934
property_value: "spatially_disjoint_from" UBERON:0002034
property_value: "spatially_disjoint_from" UBERON:0002219
property_value: "spatially_disjoint_from" UBERON:0002625
property_value: "spatially_disjoint_from" UBERON:0002689
property_value: "spatially_disjoint_from" UBERON:0007626
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002691
name: ventral tegmental area
def: "The ventral tegmentum (tegmentum is Latin for covering), better known as the ventral tegmental area (VTA), is a group of neurons located close to the midline on the floor of the midbrain. The VTA, the origin of dopaminergic cell bodies that comprise the mesocorticolimbic dopamine system, is widely implicated in the drug and natural reward circuitry of the brain, cognition, motivation, drug addiction, and several psychiatric disorders. The VTA contains neurons that project to numerous areas of the brain, from the prefrontal cortex (PFC) to the caudal brainstem and everywhere in between. [WP,unvetted]." [Wikipedia:Ventral_tegmental_area]
subset: uberon_slim
synonym: "ventral tegmental area of tsai" EXACT []
synonym: "ventral tegmental nucleus (tsai)" EXACT []
synonym: "ventral tegmental nucleus of tsai" EXACT []
xref: ABA:VTA
xref: BM:MB-VTA
xref: EFO:0001935
xref: FMA:72438
xref: GAID:587
xref: http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray712.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Gray712.png/200px-Gray712.png
xref: MESH:A.08.186.211.132.659.822.820
xref: NIF_GrossAnatomy:birnlex_1415
property_value: "spatially_disjoint_from" UBERON:0001715
property_value: "spatially_disjoint_from" UBERON:0001944
property_value: "spatially_disjoint_from" UBERON:0001947
property_value: "spatially_disjoint_from" UBERON:0001966
property_value: "spatially_disjoint_from" UBERON:0002141
property_value: "spatially_disjoint_from" UBERON:0002438
property_value: "spatially_disjoint_from" UBERON:0002696
property_value: "spatially_disjoint_from" UBERON:0002722
property_value: "spatially_disjoint_from" UBERON:0002995
property_value: "spatially_disjoint_from" UBERON:0003040
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002692
name: medullary raphe nuclear complex
synonym: "raphe medullae oblongatae" EXACT [FMA:68874, FMA:TA]
synonym: "raphe nuclei of medulla" EXACT [FMA:68874]
synonym: "raphe of medulla oblongata" EXACT [FMA:68874]
xref: FMA:68874
xref: NIF_GrossAnatomy:birnlex_1420
xref: SCTID:362420006
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata
relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei
[Term]
id: UBERON:0002693
name: occipitotemporal sulcus
synonym: "inferior temporal fissure" EXACT [FMA:74518]
synonym: "inferior temporal fissure (crosby)" EXACT [NIF_GrossAnatomy:birnlex_1422]
synonym: "inferior temporal sulcus (roberts)" EXACT []
synonym: "inferior temporal sulcus (szikla)" EXACT []
synonym: "inferior temporal sulcus-2" EXACT [FMA:74518]
synonym: "lateral occipitotemporal sulcus" EXACT [NIF_GrossAnatomy:birnlex_1422]
synonym: "occipito-temporal sulcus" EXACT [FMA:74518]
synonym: "third temporal sulcus" EXACT [FMA:74518]
xref: BM:Tel-Cx-OTS
xref: FMA:74518
xref: NIF_GrossAnatomy:birnlex_1422
xref: SCTID:369220009
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002694
name: anterior hypothalamic commissure
synonym: "anterior hypothalamic commissure (Ganser)" EXACT [FMA:62053]
synonym: "anterior hypothalamic decussation of Ganser" EXACT [FMA:62053]
xref: FMA:62053
xref: NIF_GrossAnatomy:birnlex_1424
is_a: UBERON:0011590 ! commissure of diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002695
name: parieto-occipital sulcus
def: "Only a small part of the Parietooccipital Fissure (or parieto-occipital sulcus) is seen on the lateral surface of the hemisphere, its chief part being on the medial surface. The lateral part of the parietooccipital fissure (Fig. 726) is situated about 5 cm. in front of the occipital pole of the hemisphere, and measures about 1.25 cm. in length. The medial part of the parietooccipital fissure (Fig. 727) runs downward and forward as a deep cleft on the medial surface of the hemisphere, and joins the calcarine fissure below and behind the posterior end of the corpus callosum. In most cases it contains a submerged gyrus. [WP,unvetted]." [Wikipedia:Parieto-occipital_sulcus]
comment: AO notes - two classes in ncit (in general ncit distinguishes between fissue and sulcus, whereas FMA treats these as exact synonyms)
subset: uberon_slim
synonym: "fissura parieto-occipitalis" EXACT [NIF_GrossAnatomy:birnlex_1428]
synonym: "parieto-occipital fissure" EXACT [FMA:83754]
synonym: "parieto-occipital incisure" EXACT [FMA:83754]
synonym: "parietooccipital sulcus" EXACT [FMA:83754]
synonym: "sulcus parieto-occipitalis" EXACT [NIF_GrossAnatomy:birnlex_1428]
synonym: "sulcus parieto-occipitalis medialis" EXACT [NIF_GrossAnatomy:birnlex_1428]
synonym: "sulcus parietoccipitalis" EXACT [NIF_GrossAnatomy:birnlex_1428]
synonym: "sulcus parietooccipitalis" EXACT [NIF_GrossAnatomy:birnlex_1428]
synonym: "sulcus parietooccipitalis, fissura parietooccipitalis" RELATED LATIN [Wikipedia:Parieto-occipital_sulcus]
xref: BM:Tel-Cx-POS
xref: FMA:83754
xref: http://upload.wikimedia.org/wikipedia/commons/5/5d/Gray726_parieto-occipital_sulcus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Gray726_parieto-occipital_sulcus.png/200px-Gray726_parieto-occipital_sulcus.png
xref: ncithesaurus:Parieto-occipital_Fissure
xref: ncithesaurus:Parieto-occipital_Sulcus
xref: NIF_GrossAnatomy:birnlex_1428
xref: OpenCyc:Mx4rv7l_DJwpEbGdrcN5Y29ycA
xref: SCTID:279354009
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002696
name: cuneiform nucleus
synonym: "parabigeminal area (mai)" EXACT []
xref: ABA:CUN
xref: BM:MB-CNF
xref: FMA:72427
xref: NIF_GrossAnatomy:birnlex_1430
property_value: "spatially_disjoint_from" UBERON:0001715
property_value: "spatially_disjoint_from" UBERON:0001944
property_value: "spatially_disjoint_from" UBERON:0001947
property_value: "spatially_disjoint_from" UBERON:0001966
property_value: "spatially_disjoint_from" UBERON:0002141
property_value: "spatially_disjoint_from" UBERON:0002438
property_value: "spatially_disjoint_from" UBERON:0002691
property_value: "spatially_disjoint_from" UBERON:0002722
property_value: "spatially_disjoint_from" UBERON:0002995
property_value: "spatially_disjoint_from" UBERON:0003040
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002697
name: dorsal supraoptic decussation
synonym: "commissura supraoptica dorsalis" EXACT [FMA:62051, FMA:TA]
synonym: "commissure of Meynert" EXACT []
synonym: "dorsal supra-optic commissure" EXACT [FMA:62051]
synonym: "dorsal supraoptic commissure" EXACT [FMA:62051]
synonym: "dorsal supraoptic commissure (of ganser)" EXACT []
synonym: "dorsal supraoptic decussation (of ganser)" EXACT [NIF_GrossAnatomy:birnlex_1433]
synonym: "dorsal supraoptic decussation (of Meynert)" EXACT [NIF_GrossAnatomy:birnlex_1433]
synonym: "dorsal supraoptic decussation of Meynert" EXACT []
synonym: "ganser's commissure" EXACT [FMA:62051]
synonym: "Meynert's commissure" EXACT [FMA:62051]
synonym: "supraoptic commissure of Meynert" EXACT []
synonym: "supraoptic commissures, dorsal" EXACT [FMA:62051]
xref: FMA:62051
xref: NIF_GrossAnatomy:birnlex_1433
is_a: UBERON:0001020 ! commissure
[Term]
id: UBERON:0002698
name: preoccipital notch
synonym: "incisura parieto-occipitalis" EXACT [NIF_GrossAnatomy:birnlex_1436]
synonym: "incisura praeoccipitalis" EXACT [NIF_GrossAnatomy:birnlex_1436]
synonym: "incisura preoccipitalis" EXACT [NIF_GrossAnatomy:birnlex_1436]
synonym: "occipital notch" EXACT [FMA:83739]
synonym: "preoccipital incisura" EXACT [FMA:83739]
synonym: "preoccipital incisure" EXACT [FMA:83739]
xref: FMA:83739
xref: NIF_GrossAnatomy:birnlex_1436
xref: SCTID:369229005
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002699
name: supraopticohypophysial tract
synonym: "supra-opticohypophysial tract" EXACT [FMA:62054]
synonym: "supraopticohypophyseal tract" EXACT [FMA:62054]
synonym: "tractus supraopticohypophysialis" EXACT [FMA:62054, FMA:TA]
xref: FMA:62054
xref: NIF_GrossAnatomy:birnlex_1440
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002700
name: subcuneiform nucleus
synonym: "subcuneiform area of midbrain" EXACT [FMA:72428]
xref: FMA:72428
xref: NIF_GrossAnatomy:birnlex_1441
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002701
name: anterior median oculomotor nucleus
synonym: "anterior median nucleus of oculomotor nerve" EXACT [FMA:72423]
xref: FMA:72423
xref: NIF_GrossAnatomy:birnlex_1445
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002702
name: middle frontal gyrus
def: "The middle frontal gyrus makes up about one-third of the frontal lobe of the human brain. (A gyrus is one of the prominent 'bumps' or 'ridges' on the surface of the human brain. ) The middle frontal gyrus, like the inferior frontal gyrus and the superior frontal gyrus, is more of a region than a true gyrus. The borders of the middle frontal gyrus are the inferior frontal sulcus below; the superior frontal sulcus above; and the precentral sulcus behind. [WP,unvetted]." [Wikipedia:Middle_frontal_gyrus]
subset: uberon_slim
synonym: "gyrus frontalis medialis" EXACT [FMA:61859, FMA:TA]
synonym: "gyrus frontalis medius" RELATED LATIN [Wikipedia:Middle_frontal_gyrus]
synonym: "intermediate frontal gyrus" EXACT [FMA:61859]
synonym: "medial frontal gyrus" EXACT [FMA:61859]
xref: BTO:0004834
xref: FMA:61859
xref: http://upload.wikimedia.org/wikipedia/commons/7/7f/Middle_frontal_gyrus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Middle_frontal_gyrus.png/200px-Middle_frontal_gyrus.png
xref: ncithesaurus:Middle_Frontal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1451
xref: SCTID:362332009
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0001870 ! frontal cortex
[Term]
id: UBERON:0002703
name: precentral gyrus
def: "The primary motor cortex (or M1) is a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). [WP,unvetted]." [Wikipedia:Precentral_gyrus]
subset: uberon_slim
synonym: "precentral convolution" EXACT [FMA:61894]
synonym: "prerolandic gyrus" EXACT [FMA:61894]
xref: EFO:0001373
xref: FMA:61894
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Ba4.png/200px-Ba4.png
xref: ncithesaurus:Precentral_Gyrus
xref: NIF_GrossAnatomy:birnlex_1455
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0001870 ! frontal cortex
[Term]
id: UBERON:0002704
name: metathalamus
def: "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted]." [Wikipedia:Metathalamus]
comment: note we follow FMA in making this a subtype of nucleus, but in fact it is a group containing two nuclei
subset: uberon_slim
synonym: "corpora geniculata" RELATED LATIN [Wikipedia:Metathalamus]
synonym: "geniculate group of the dorsal thalamus" EXACT [FMA:62023]
synonym: "nuclei metathalami" EXACT [NIF_GrossAnatomy:birnlex_1461]
xref: ABA:GENd
xref: EV:0100217
xref: FMA:62023
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: MA:0000868
xref: NIF_GrossAnatomy:birnlex_1461
xref: SCTID:361550004
property_value: "spatially_disjoint_from" UBERON:0002144
property_value: "spatially_disjoint_from" UBERON:0002776
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0004703 {source="MA"} ! dorsal thalamus
[Term]
id: UBERON:0002705
name: midline nuclear group
def: "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted]." [Wikipedia:Midline_nuclear_group]
subset: uberon_slim
synonym: "median nuclei of thalamus" EXACT [FMA:62020]
synonym: "midline nuclear group" EXACT [FMA:62020]
synonym: "midline nuclear group of thalamus" EXACT [FMA:62020]
synonym: "midline nuclei of thalamus" EXACT [FMA:62020]
synonym: "midline thalamic group" EXACT [MA:0000864]
synonym: "nuclei mediani (thalami)" EXACT [NIF_GrossAnatomy:birnlex_1462]
synonym: "nuclei mediani thalami" EXACT [FMA:62020, FMA:TA]
synonym: "nuclei mediani thalami" RELATED LATIN [Wikipedia:Midline_nuclear_group]
synonym: "periventricular nuclei of thalamus" EXACT [FMA:62020]
xref: ABA:MTN
xref: BTO:0002454
xref: FMA:62020
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: MA:0000864
xref: NIF_GrossAnatomy:birnlex_1462
xref: SCTID:279163002
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001897 {source="FMA"} ! thalamus
relationship: part_of UBERON:0004703 {source="MA"} ! dorsal thalamus
[Term]
id: UBERON:0002706
name: posterior nucleus of hypothalamus
synonym: "area hypothalamica posterior" EXACT [FMA:62350, FMA:TA]
synonym: "nucleus posterior hypothalami" RELATED [BTO:0002461]
synonym: "posterior hypothalamic area" EXACT [FMA:62350]
synonym: "posterior hypothalamic nucleus" EXACT [FMA:62350]
xref: ABA:PH
xref: BM:Die-Hy-HPA
xref: BTO:0002461
xref: EV:0100235
xref: FMA:62350
xref: NIF_GrossAnatomy:birnlex_1463
xref: SCTID:362385002
property_value: "spatially_disjoint_from" UBERON:0001935
property_value: "spatially_disjoint_from" UBERON:0002035
property_value: "spatially_disjoint_from" UBERON:0002206
property_value: "spatially_disjoint_from" UBERON:0002634
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002707
name: pyramidal tract
def: "The corticospinal or pyramidal tract is a collection of axons that travel between the cerebral cortex of the brain and the spinal cord. The corticospinal tract mostly contains motor axons. It actually consists of two separate tracts in the spinal cord: the lateral corticospinal tract and the medial corticospinal tract. An understanding of these tracts leads to an understanding of why for the most part, one side of the body is controlled by the opposite side of the brain. Also the corticobulbar tract is considered to be a pyramidal tract. The corticobulbar tract carries signals that control motor neurons located in cranial nerve brain nuclei rather than motor neurons located in the spinal cord. The neurons of the pyramidal tracts are pyramidal neurons, but that is not how the pyramidal tract got its name, as most of the pyramidal neurons send their axons elsewhere. Instead, it got its name from the shape of the corticospinal axon tracts: when the pyramidal tract passes the medulla, it forms a dense bundle of nerve fibres that is shaped somewhat like a pyramid. [WP,unvetted]." [Wikipedia:Pyramidal_tract]
subset: uberon_slim
xref: BM:Me-PyT
xref: FMA:72634
xref: GAID:702
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Gray684.png/200px-Gray684.png
xref: MESH:A.08.186.854.633
xref: NIF_GrossAnatomy:birnlex_1464
xref: SCTID:362325000
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002708
name: posterior periventricular nucleus
synonym: "nucleus periventricularis posterior" RELATED [BTO:0002479]
synonym: "periventricular nucleus, posterior subdivision" EXACT [FMA:62349]
synonym: "posterior periventricular hypothalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1466]
synonym: "posterior periventricular nucleus" EXACT [FMA:62349]
synonym: "posterior periventricular nucleus of hypothalamus" EXACT [FMA:62349]
xref: BTO:0002479
xref: FMA:62349
xref: NIF_GrossAnatomy:birnlex_1466
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002709
name: posterior nuclear complex
subset: vertebrate_core
synonym: "nuclei posteriores thalami" EXACT [NIF_GrossAnatomy:birnlex_1467]
synonym: "posterior complex of thalamus" EXACT [FMA:62024]
synonym: "posterior nuclear complex" EXACT [FMA:62024]
synonym: "posterior nuclear complex of thalamus" EXACT [FMA:62024]
synonym: "posterior nuclear group of thalamus" EXACT [FMA:62024]
synonym: "posterior thalamic nuclear group" EXACT [FMA:62024]
synonym: "posterior thalamic nucleus" RELATED [BTO:0002462]
xref: ABA:PO
xref: BTO:0002462
xref: FMA:62024
xref: NIF_GrossAnatomy:birnlex_1467
xref: SCTID:424395006
xref: TAO:0000325
xref: ZFA:0000325
property_value: "spatially_disjoint_from" UBERON:0002983
property_value: "spatially_disjoint_from" UBERON:0003033
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002710
name: cingulate sulcus
def: "The cingulate sulcus is a sulcus (brain fold) on the medial wall of the cerebral cortex. The frontal and parietal lobes are separated by the cingulate sulcus from the cingulate gyrus. [WP,unvetted]." [Wikipedia:Cingulate_sulcus]
subset: uberon_slim
synonym: "calloso-marginal sulcus" EXACT [FMA:83748]
synonym: "callosomarginal fissure" EXACT [FMA:83748]
synonym: "callosomarginal sulcus" EXACT [FMA:83748]
synonym: "cingulate fissure" EXACT [FMA:83748]
synonym: "sulcus callosomarginalis" EXACT [NIF_GrossAnatomy:birnlex_1468]
synonym: "sulcus cingulatus" EXACT [NIF_GrossAnatomy:birnlex_1468]
synonym: "sulcus cinguli" EXACT [NIF_GrossAnatomy:birnlex_1468]
synonym: "sulcus cinguli" RELATED LATIN [Wikipedia:Cingulate_sulcus]
xref: BM:Tel-Cx-CGS
xref: FMA:83748
xref: http://upload.wikimedia.org/wikipedia/commons/2/2e/Gray727_cingulate_sulcus.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Gray727_cingulate_sulcus.svg/200px-Gray727_cingulate_sulcus.svg.png
xref: NIF_GrossAnatomy:birnlex_1468
xref: SCTID:279350000
is_a: UBERON:0000093 ! sulcus
relationship: adjacent_to UBERON:0002967 ! cingulate gyrus
[Term]
id: UBERON:0002711
name: nucleus of posterior commissure
synonym: "posterior commissure nucleus" EXACT [FMA:68463]
xref: ABA:NPC
xref: BM:NPC
xref: FMA:68463
xref: NIF_GrossAnatomy:birnlex_1470
property_value: "spatially_disjoint_from" UBERON:0002565
property_value: "spatially_disjoint_from" UBERON:0002996
property_value: "spatially_disjoint_from" UBERON:0006848
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002712
name: premammillary nucleus
synonym: "premammillary nuclei" EXACT [FMA:62348]
xref: FMA:62348
xref: NIF_GrossAnatomy:birnlex_1473
is_a: UBERON:0002789 ! regional part of posterior hypothalamic region
is_a: UBERON:0006568 {source="FMA"} ! hypothalamic nucleus
relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region
[Term]
id: UBERON:0002713
name: circular sulcus of insula
def: "A marginal sulcus that is part of a insula [Obol]." [OBOL:automatic]
synonym: "central lobe marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "central lobe marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "central lobe marginal sulcus" EXACT [OBOL:automatic]
synonym: "circular fissure" EXACT [FMA:83753]
synonym: "circular sulcus (of reil)" EXACT []
synonym: "circuminsular sulcus" EXACT [FMA:83753]
synonym: "ciruclar insular sulcus" EXACT [NIF_GrossAnatomy:birnlex_1475]
synonym: "cortex of island marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "cortex of island marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "cortex of island marginal sulcus" EXACT [OBOL:automatic]
synonym: "insula lobule marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insula lobule marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insula lobule marginal sulcus" EXACT [OBOL:automatic]
synonym: "insula marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insula marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insula marginal sulcus" EXACT [OBOL:automatic]
synonym: "insular cortex marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insular cortex marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insular cortex marginal sulcus" EXACT [OBOL:automatic]
synonym: "insular lobe marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insular lobe marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insular lobe marginal sulcus" EXACT [OBOL:automatic]
synonym: "insular region marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insular region marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insular region marginal sulcus" EXACT [OBOL:automatic]
synonym: "island of reil marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "island of reil marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "island of reil marginal sulcus" EXACT [OBOL:automatic]
synonym: "limiting fissure" EXACT [FMA:83753]
synonym: "marginal branch of cingulate sulcus of central lobe" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of cortex of island" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of insula" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of insula lobule" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of insular cortex" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of insular lobe" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of insular region" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of island of reil" EXACT [OBOL:automatic]
synonym: "marginal insular sulcus" EXACT [NIF_GrossAnatomy:birnlex_1475]
synonym: "marginal ramus of cingulate sulcus of central lobe" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of cortex of island" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of insula" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of insula lobule" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of insular cortex" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of insular lobe" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of insular region" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of island of reil" EXACT [OBOL:automatic]
synonym: "marginal sulcus of central lobe" EXACT [OBOL:automatic]
synonym: "marginal sulcus of cortex of island" EXACT [OBOL:automatic]
synonym: "marginal sulcus of insula" EXACT [FMA:83753]
synonym: "marginal sulcus of insula lobule" EXACT [OBOL:automatic]
synonym: "marginal sulcus of insular cortex" EXACT [OBOL:automatic]
synonym: "marginal sulcus of insular lobe" EXACT [OBOL:automatic]
synonym: "marginal sulcus of insular region" EXACT [OBOL:automatic]
synonym: "marginal sulcus of island of reil" EXACT [OBOL:automatic]
synonym: "sulcus circularis insulae" EXACT [NIF_GrossAnatomy:birnlex_1475]
synonym: "sulcus marginalis insulae" EXACT [NIF_GrossAnatomy:birnlex_1475]
xref: FMA:83753
xref: NIF_GrossAnatomy:birnlex_1475
is_a: UBERON:0002912 ! marginal sulcus
relationship: part_of UBERON:0002022
intersection_of: UBERON:0002912 ! marginal sulcus
intersection_of: part_of UBERON:0002022 ! insula
relationship: part_of UBERON:0002022 ! insula
[Term]
id: UBERON:0002714
name: rubrospinal tract
def: "long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the red nucleus of the midbrain towards target cells in the spinal cord[GO]." [Wikipedia:Rubrospinal_tract]
subset: uberon_slim
synonym: "monakow's tract" EXACT [FMA:72640]
synonym: "rubrospinal tract (monakow)" EXACT [NIF_GrossAnatomy:birnlex_1476]
synonym: "tractus rubrospinalis" RELATED LATIN [Wikipedia:Rubrospinal_tract]
xref: FMA:72640
xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png
xref: NIF_GrossAnatomy:birnlex_1476
xref: SCTID:369264001
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002715
name: spinal trigeminal tract of medulla
xref: FMA:72625
xref: NIF_GrossAnatomy:birnlex_1477
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002716
name: collateral sulcus
def: "The collateral fissure (or sulcus) is on the tentorial surface of the hemisphere and extends from near the occipital pole to within a short distance of the temporal pole. Behind, it lies below and lateral to the calcarine fissure, from which it is separated by the lingual gyrus; in front, it is situated between the hippocampal gyrus and the anterior part of the fusiform gyrus. [WP,unvetted]." [Wikipedia:Collateral_fissure]
comment: AO notes: cnit has two distinct classes; FMA and NIF treat these as exact synonyms.
subset: uberon_slim
synonym: "collateral fissure" EXACT [FMA:83751]
synonym: "sulcus collateralis" EXACT [NIF_GrossAnatomy:birnlex_1480]
synonym: "sulcus collateralis, fissura collateralis" RELATED LATIN [Wikipedia:Collateral_fissure]
xref: FMA:83751
xref: http://upload.wikimedia.org/wikipedia/commons/9/93/Gray738.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray738.png/200px-Gray738.png
xref: ncithesaurus:Collateral_Fissure
xref: ncithesaurus:Collateral_Sulcus
xref: NIF_GrossAnatomy:birnlex_1480
xref: SCTID:279356006
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002717
name: rostral interstitial nucleus of medial longitudinal fasciculus
def: "The rostral interstitial nucleus of medial longitudinal fasciculus (riMLF) is a portion of the medial longitudinal fasciculus which controls vertical gaze. They project to the vestibular nuclei. [WP,unvetted]." [Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus]
subset: uberon_slim
synonym: "nucleus interstitialis" RELATED LATIN [Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus]
synonym: "rostral interstitial nucleus of mlf" EXACT []
xref: FMA:72433
xref: http://upload.wikimedia.org/wikipedia/commons/9/90/Gray710.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/90/Gray710.png/200px-Gray710.png
xref: NIF_GrossAnatomy:birnlex_1481
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002718
name: solitary tract
def: "The solitary tract is a compact fiber bundle that extends longitudinally through the posterolateral region of the medulla. The solitary tract is surrounded by the nucleus of the solitary tract, and descends to the upper cervical segments of the spinal cord. [WP,unvetted]." [Wikipedia:Solitary_tract]
subset: uberon_slim
synonym: "respiratory bundle of Gierke" EXACT []
synonym: "tractus solitarius medullae oblongatae" RELATED LATIN [Wikipedia:Solitary_tract]
xref: BM:Me-ST
xref: FMA:72619
xref: http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png
xref: NIF_GrossAnatomy:birnlex_1483
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002719
name: spino-olivary tract
def: "The spino-olivary tract is located in the ventral funiculus of the spinal cord. This tract carries proprioception information from muscles and tendons as well as cutaneous impulses to the olivary nucleus. [WP,unvetted]." [Wikipedia:Spino-olivary_tract]
subset: uberon_slim
synonym: "helweg's tract" EXACT [FMA:72643]
synonym: "tractus spinoolivaris" RELATED LATIN [Wikipedia:Spino-olivary_tract]
xref: FMA:72643
xref: NIF_GrossAnatomy:birnlex_1484
xref: SCTID:362607001
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002720
name: mammillary peduncle
synonym: "peduncle of mammillary body" EXACT [FMA:62061]
xref: FMA:62061
xref: NIF_GrossAnatomy:birnlex_1486
xref: SCTID:369146004
is_a: UBERON:0003931 ! diencephalic white matter
relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region
[Term]
id: UBERON:0002721
name: lateral sulcus
def: "A sulcus that divides the frontal lobe and parietal lobe above from the temporal lobe below. It is in both hemispheres of the brain but is longer in the left hemisphere. The lateral sulcus is one of the earliest-developing sulci of the human brain. It first appears around the fourteenth gestational week[WP,modified]." [Wikipedia:Lateral_sulcus]
subset: uberon_slim
synonym: "fissura lateralis" EXACT [NIF_GrossAnatomy:birnlex_1487]
synonym: "fissura lateralis cerebri" EXACT [NIF_GrossAnatomy:birnlex_1487]
synonym: "fissura lateralis cerebri (sylvii)" EXACT [NIF_GrossAnatomy:birnlex_1487]
synonym: "fissura transversa cerebri" EXACT [FMA:77801, FMA:TA]
synonym: "fissure of Sylvius" EXACT []
synonym: "lateral cerebral fissure" EXACT []
synonym: "lateral cerebral fissure" EXACT [FMA:77801]
synonym: "lateral cerebral sulcus" EXACT [FMA:77801]
synonym: "lateral fissure" EXACT [FMA:77801]
synonym: "lateral fissure of Sylvius" EXACT []
synonym: "sulcus lateralis" EXACT [NIF_GrossAnatomy:birnlex_1487]
synonym: "sulcus lateralis cerebri" EXACT [FMA:77801, FMA:TA]
synonym: "sulcus lateralis cerebri" RELATED LATIN [Wikipedia:Lateral_sulcus]
synonym: "Sylvian fissure" EXACT [NIF_GrossAnatomy:birnlex_1487]
synonym: "transverse cerebral fissure" EXACT [FMA:77801]
xref: BM:Tel-Cx-LS
xref: FMA:77801
xref: http://upload.wikimedia.org/wikipedia/commons/4/41/Lateral_sulcus2.png
xref: ncithesaurus:Fissure_of_Sylvius
xref: NIF_GrossAnatomy:birnlex_1487
xref: SCTID:369226003
is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus
[Term]
id: UBERON:0002722
name: trochlear nucleus
def: "The nucleus of the trochlear nerve is located in the midbrain, at the level of the inferior colliculus. It is a motor nucleus, so located near the midline. Oddly, fibers from the trochlear nucleus cross over in the midbrain at the superior medullary velum and exit posteriorly, (this is the only cranial nerve to do so). The nerve then goes around the midbrain, and is visible coming out the sides. [WP,unvetted]." [Wikipedia:Trochlear_nucleus]
subset: uberon_slim
subset: vertebrate_core
synonym: "fourth cranial nerve nucleus" EXACT [FMA:54518]
synonym: "motor nucleus IV" EXACT [ZFA:0000450]
synonym: "nIV" EXACT [ZFA:0000450]
synonym: "nucleus nervi trochlearis" EXACT [FMA:54518, FMA:TA]
synonym: "nucleus nervi trochlearis" RELATED LATIN [Wikipedia:Trochlear_nucleus]
synonym: "nucleus of trochlear nerve" EXACT [FMA:54518]
synonym: "trochlear IV nucleus" EXACT [MA:0001075]
synonym: "trochlear motor nucleus" EXACT [ZFA:0000450]
xref: ABA:IV
xref: BM:MB-IV
xref: EV:0100251
xref: FMA:54518
xref: http://upload.wikimedia.org/wikipedia/commons/c/c6/Drn.png
xref: http://upload.wikimedia.org/wikipedia/en/thumb/c/c6/Drn.png/200px-Drn.png
xref: MA:0001075
xref: NIF_GrossAnatomy:birnlex_1488
xref: SCTID:280163001
xref: TAO:0000450
xref: ZFA:0000450
property_value: "spatially_disjoint_from" UBERON:0001715
property_value: "spatially_disjoint_from" UBERON:0001944
property_value: "spatially_disjoint_from" UBERON:0001947
property_value: "spatially_disjoint_from" UBERON:0001966
property_value: "spatially_disjoint_from" UBERON:0002141
property_value: "spatially_disjoint_from" UBERON:0002438
property_value: "spatially_disjoint_from" UBERON:0002691
property_value: "spatially_disjoint_from" UBERON:0002696
property_value: "spatially_disjoint_from" UBERON:0002995
property_value: "spatially_disjoint_from" UBERON:0003040
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: continuous_with UBERON:0001644 ! trochlear nerve
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002723
name: mammillary princeps fasciculus
synonym: "principal mammillary fasciculus" EXACT [FMA:62057]
synonym: "principal mammillary tract" EXACT [NIF_GrossAnatomy:birnlex_1492]
synonym: "principle mamillary fasciculus" EXACT [FMA:62057]
xref: FMA:62057
xref: NIF_GrossAnatomy:birnlex_1492
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002724
name: limen of insula
synonym: "angulus gyri olfactorii lateralis" EXACT [FMA:75266]
synonym: "gyrus ambiens (noback)" EXACT [NIF_GrossAnatomy:birnlex_1493]
synonym: "insula limen" EXACT [FMA:75266]
synonym: "limen insulae" EXACT [NIF_GrossAnatomy:birnlex_1493]
xref: FMA:75266
xref: NIF_GrossAnatomy:birnlex_1493
xref: SCTID:369215009
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002726
name: cervical spinal cord
synonym: "cervical segment of spinal cord" EXACT [FMA:71166]
synonym: "cervical segments of spinal cord [1-8]" EXACT [FMA:71166]
synonym: "cervical spinal cord" EXACT [FMA:71166]
synonym: "segmenta cervicalia medullae spinalis [1-8" EXACT [FMA:71166, FMA:TA]
xref: FMA:71166
xref: ncithesaurus:Cervical_Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_1499
xref: SCTID:180960003
is_a: UBERON:0005844 ! spinal cord segment
relationship: adjacent_to UBERON:0005434
intersection_of: UBERON:0005844 ! spinal cord segment
intersection_of: adjacent_to UBERON:0005434 ! cervical region
relationship: adjacent_to UBERON:0005434 ! cervical region
[Term]
id: UBERON:0002727
name: medial medullary lamina
synonym: "inner medullary lamina" EXACT [FMA:62470]
synonym: "internal medullary lamina of corpus striatum" EXACT [FMA:62470]
synonym: "internal medullary lamina of globus pallidus" EXACT [FMA:62470]
synonym: "internal medullary lamina of lentiform nucleus" EXACT [FMA:62470]
synonym: "lamina medullaris interna corporis striati" EXACT [FMA:62470, FMA:TA]
synonym: "lamina medullaris medialis corporis striati" EXACT [FMA:62470, FMA:TA]
synonym: "medial medullary lamina" EXACT [FMA:62470]
synonym: "medial medullary lamina of corpus striatum" EXACT [FMA:62470]
synonym: "medial medullary lamina of globus pallidus" EXACT [FMA:62470]
synonym: "medial medullary lamina of pallidum" EXACT [FMA:62470]
synonym: "medial medullary stria" EXACT [FMA:62470]
xref: BTO:0002251
xref: FMA:62470
xref: NIF_GrossAnatomy:birnlex_1501
xref: SCTID:369205003
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011299 ! white matter of telencephalon
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002728
name: entorhinal area
def: "Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK)." [NIF_GrossAnatomy:birnlex_1508, Wikipedia:Entorhinal_cortex]
comment: todo - check area vs complex. ABA:ENT this is part of the hippocampal formation via retrohippocampal region
subset: uberon_slim
synonym: "Brodmann's area 28" RELATED [BTO:0002650]
synonym: "entorhinal cortex" EXACT [NIF_GrossAnatomy:birnlex_1508]
xref: ABA:ENT
xref: BM:Tel-Cx-ENT
xref: BTO:0002650
xref: BTO:0004345
xref: EFO:0001920
xref: FMA:72356
xref: GAID:636
xref: http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray-Brodman-Entorhinal_Cortex_EC_.png
xref: MESH:A.08.186.211.577.710.225
xref: ncithesaurus:Entorhinal_Cortex
xref: NIF_GrossAnatomy:birnlex_1508
xref: SCTID:369099007
property_value: "spatially_disjoint_from" UBERON:0001953
property_value: "spatially_disjoint_from" UBERON:0002191
property_value: "spatially_disjoint_from" UBERON:0004683
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus
relationship: part_of UBERON:0004725 {source="BTO"} ! piriform cortex
[Term]
id: UBERON:0002729
name: claustral amygdaloid area
synonym: "claustrum diffusa" EXACT [FMA:61869]
synonym: "claustrum parvum" EXACT [FMA:61869]
synonym: "ventral claustrum" EXACT [FMA:61869]
synonym: "ventral portion of claustrum" EXACT [FMA:61869]
xref: FMA:61869
xref: NIF_GrossAnatomy:birnlex_1515
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0001876 {source="FMA"} ! amygdala
relationship: part_of UBERON:0006098 {source="NIF"} ! basal nuclear complex
[Term]
id: UBERON:0002730
name: regional part of thalamus
def: "A regional part of brain that is part of a thalamus [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of thalamus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "biological structure of brain of thalamus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of thalamus" EXACT [OBOL:automatic]
synonym: "brain biological structure of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "brain biological structure of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "brain biological structure of thalamus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) biological structure of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) brain anatomical structure" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) brain biological structure" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) neuraxis segment" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) regional part of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) segment of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus biological structure of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "dorsal thalamus brain biological structure" EXACT [OBOL:automatic]
synonym: "dorsal thalamus neuraxis segment" EXACT [OBOL:automatic]
synonym: "dorsal thalamus regional part of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "neuraxis segment of thalamus" EXACT [OBOL:automatic]
synonym: "regional part of brain of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "regional part of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "regional part of brain of thalamus" EXACT [OBOL:automatic]
synonym: "segment of brain of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "segment of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "segment of brain of thalamus" EXACT [OBOL:automatic]
synonym: "segment of thalamus" EXACT [NIF_GrossAnatomy:birnlex_1517]
synonym: "thalamus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "thalamus biological structure of brain" EXACT [OBOL:automatic]
synonym: "thalamus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "thalamus brain biological structure" EXACT [OBOL:automatic]
synonym: "thalamus neuraxis segment" EXACT [OBOL:automatic]
synonym: "thalamus regional part of brain" EXACT [OBOL:automatic]
synonym: "thalamus segment" EXACT [FMA:67705]
synonym: "thalamus segment of brain" EXACT [OBOL:automatic]
xref: FMA:67705
xref: NIF_GrossAnatomy:birnlex_1517
xref: SCTID:119406000
is_a: UBERON:0002784 ! regional part of diencephalon
relationship: part_of UBERON:0001897
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001897 ! thalamus
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002731
name: vestibulocochlear nerve root
synonym: "central part of vestibulocochlear nerve" EXACT [FMA:72499]
synonym: "statoacoustic nerve fibers" EXACT [FMA:72499]
synonym: "vestibulocochlear nerve fibers" EXACT [FMA:72499]
synonym: "vestibulocochlear nerve roots" EXACT [FMA:72499]
synonym: "vestibulocochlear nerve tract" EXACT [FMA:72499]
xref: FMA:72499
xref: NIF_GrossAnatomy:birnlex_1519
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002732
name: longitudinal pontine fibers
synonym: "fibrae pontis longitudinales" EXACT [FMA:72513, FMA:TA]
synonym: "longitudinal fasciculus of the pons" EXACT [FMA:72513]
synonym: "longitudinal pontine fibers" EXACT [FMA:72513]
synonym: "longitudinal pontine fibres" EXACT [FMA:72513]
synonym: "longitudinal pontine tract" EXACT [FMA:72513]
xref: FMA:72513
xref: NIF_GrossAnatomy:birnlex_1523
xref: SCTID:361544009
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002733
name: intralaminar nuclear group
def: "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted]." [Wikipedia:Intralaminar_thalamic_nuclei]
subset: uberon_slim
synonym: "intralaminar nuclear group" EXACT [FMA:62021]
synonym: "intralaminar nuclear group of thalamus" EXACT [FMA:62021]
synonym: "intralaminar nuclei of thalamus" EXACT [FMA:62021]
synonym: "intralaminar thalamic nuclei" EXACT [FMA:62021]
synonym: "nonspecific thalamic system" EXACT [FMA:62021]
synonym: "nuclei intralaminares (thalami)" EXACT [NIF_GrossAnatomy:birnlex_1530]
synonym: "nuclei intralaminares thalami" EXACT [FMA:62021, FMA:TA]
xref: ABA:ILM
xref: FMA:62021
xref: GAID:660
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Thalmus.png/200px-Thalmus.png
xref: MESH:A.08.186.211.730.385.826.701.460
xref: NIF_GrossAnatomy:birnlex_1530
xref: SCTID:279159009
property_value: "spatially_disjoint_from" UBERON:0001899
property_value: "spatially_disjoint_from" UBERON:0001903
property_value: "spatially_disjoint_from" UBERON:0002736
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002734
name: superior temporal sulcus
synonym: "parallel sulcus" EXACT [FMA:83783]
synonym: "sulcus t1" EXACT [FMA:83783]
synonym: "superior temporal fissure" EXACT [FMA:83783]
xref: BM:Tel-Cx-STS
xref: FMA:83783
xref: ncithesaurus:Superior_Temporal_Sulcus
xref: NIF_GrossAnatomy:birnlex_1534
xref: SCTID:279344005
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002735
name: transverse pontine fibers
synonym: "fibrae pontis transversae" EXACT [FMA:72514, FMA:TA]
synonym: "superficial transverse fibers of pons" EXACT [FMA:72514]
synonym: "transverse fibers of pons" EXACT [FMA:72514]
synonym: "transverse pontine fibers" EXACT [FMA:72514]
synonym: "transverse pontine fibres" EXACT [FMA:72514]
synonym: "transverse pontine tract" EXACT [FMA:72514]
xref: FMA:72514
xref: NIF_GrossAnatomy:birnlex_1535
xref: SCTID:79836003
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002736
name: lateral nuclear group
def: "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted]." [Wikipedia:Lateral_nuclear_group]
subset: uberon_slim
synonym: "lateral group of the dorsal thalamus" EXACT [NIF_GrossAnatomy:birnlex_1537]
synonym: "lateral nuclear group" EXACT [FMA:62174]
synonym: "lateral nuclear group of thalamus" EXACT [FMA:62174]
synonym: "lateral nucleus of thalamus" EXACT [FMA:62174]
synonym: "lateral thalamic nuclei" EXACT [FMA:62174]
synonym: "lateral thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1537]
synonym: "nuclei laterales thalami" EXACT [NIF_GrossAnatomy:birnlex_1537]
synonym: "nucleus lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_1537]
xref: ABA:LAT
xref: EV:0100210
xref: FMA:62174
xref: GAID:661
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: MESH:A.08.186.211.730.385.826.701.485
xref: NIF_GrossAnatomy:birnlex_1537
xref: SCTID:279126006
property_value: "spatially_disjoint_from" UBERON:0001899
property_value: "spatially_disjoint_from" UBERON:0001903
property_value: "spatially_disjoint_from" UBERON:0002733
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002737
name: lateral inferior limiting sulcus
xref: FMA:74523
xref: NIF_GrossAnatomy:birnlex_1540
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002738
name: isthmus of cingulate gyrus
synonym: "cingulate gyrus isthmus" EXACT [FMA:62502]
synonym: "isthmus of fornicate gyrus" EXACT [FMA:62502]
synonym: "isthmus of limbic lobe" EXACT [FMA:62502]
xref: FMA:62502
xref: NIF_GrossAnatomy:birnlex_1541
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002967 ! cingulate gyrus
[Term]
id: UBERON:0002739
name: medial dorsal nucleus
def: "The medial dorsal nucleus (or dorsomedial nucleus of thalamus) is a large nucleus in the thalamus. It receives inputs from the Pre-Frontal Cortex and the Limbic System and in turn relays them to the Pre-Frontal Association Cortex. As a result, it plays a crucial role in attention, planning, organization, abstract thinking, multi-tasking and active memory. The connections of the medial dorsal nucleus have even been used to delineate the prefrontal cortex of the Göttingen minipig brain. By stereology the number of brain cells in the region has been estimated to around 6.43 million neurons in the adult human brain and 36.3 million glial cells, and with the newborn having quite different numbers: around 11.2 million neurons and 10.6 million glial cells. Lesions of the medial dorsal nucleus have been associated with Wernicke's encephalopathy [WP,unvetted]." [Wikipedia:Medial_dorsal_nucleus]
subset: uberon_slim
synonym: "dorsal medial nucleus of thalamus" EXACT [FMA:62156]
synonym: "dorsomedial nuclear group" EXACT [FMA:62156]
synonym: "dorsomedial nucleus" EXACT [FMA:62156]
synonym: "dorsomedial nucleus of thalamus" EXACT [FMA:62156]
synonym: "medial dorsal nucleus" EXACT [FMA:62156]
synonym: "medial dorsal nucleus of thalamus" EXACT [FMA:62156]
synonym: "medial dorsal thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_1543]
synonym: "medial nuclear group" EXACT [FMA:62156]
synonym: "medial nuclear group of thalamus" EXACT [FMA:62156]
synonym: "medial thalamic nuclei" EXACT [FMA:62156]
synonym: "medial thalamic nucleus" EXACT [FMA:62156]
synonym: "mediodorsal nucleus" EXACT [FMA:62156]
synonym: "mediodorsal nucleus of thalamus" EXACT [DHB:MD]
synonym: "mediodorsal thalamic nucleus" EXACT [FMA:62156]
synonym: "nucleus dorsomedialis thalami" EXACT [NIF_GrossAnatomy:birnlex_1543]
synonym: "nucleus medialis dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1543]
synonym: "nucleus mediodorsalis thalami" RELATED LATIN [Wikipedia:Medial_dorsal_nucleus]
synonym: "nucleus mediodorsalis thalami" RELATED [BTO:0002453]
xref: ABA:MD
xref: BM:Die-Th-MD
xref: BTO:0002453
xref: EV:0100200
xref: FMA:62156
xref: GAID:663
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: MESH:A.08.186.211.730.385.826.701.490
xref: ncithesaurus:Dorsomedial_Nucleus_of_the_Thalamus
xref: NIF_GrossAnatomy:birnlex_1543
xref: SCTID:279149008
property_value: "spatially_disjoint_from" UBERON:0003031
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002740
name: posterior cingulate gyrus
def: "The posterior cingulate cortex is the backmost part of the cingulate cortex, lying behind the anterior cingulate cortex. This is the upper part of the 'limbic lobe'. The cingulate cortex is made up of an area around the midline of the brain. Surrounding areas include the retrosplenial cortex and the precuneus. Cytoarchitectonically posterior cingulate cortex is associated with Brodmann areas 23 and 31. [WP,unvetted]." [Wikipedia:Posterior_cingulate_gyrus]
subset: uberon_slim
xref: FMA:61924
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray727.svg/200px-Gray727.svg.png
xref: NIF_GrossAnatomy:birnlex_1546
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0002967 ! cingulate gyrus
[Term]
id: UBERON:0002741
name: diagonal band
def: "The diagonal band of Broca consists of fibers that are said to arise in the parolfactory area, the gyrus subcallosus and the anterior perforated substance, and course backward in the longitudinal striae to the dentate gyrus and the hippocampal region. This is a cholinergic bundle of nerve fibers posterior to the anterior perforated substance. It interconnects the paraterminal gyrus in the septal area with the hippocampus and lateral olfactory area. Along with the Septum Pellucidum the Diagonal Band of Broca is believed to be involved in the generation of theta waves in the hippocampus. [WP,unvetted]." [Wikipedia:Diagonal_band_of_Broca]
subset: uberon_slim
synonym: "band of Broca" RELATED [BTO:0002445]
synonym: "bandaletta diagonalis (Broca)" RELATED [BTO:0002445]
synonym: "broca's diagonal band" EXACT [FMA:61973]
synonym: "broca's diagonal gyrus" EXACT [FMA:61973]
synonym: "diagonal band of broca" EXACT []
synonym: "diagonal gyrus" EXACT [FMA:61973]
synonym: "olfactory fasciculus" EXACT [FMA:61973]
synonym: "olfactory radiations of zuckerkandl" EXACT []
synonym: "stria diagonalis" RELATED LATIN [Wikipedia:Diagonal_band_of_Broca]
synonym: "stria diagonalis" RELATED [BTO:0002445]
synonym: "stria diagonalis (Broca)" RELATED [BTO:0002445]
xref: BTO:0002445
xref: FMA:61973
xref: GAID:684
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray724.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray724.png/200px-Gray724.png
xref: MESH:A.08.186.211.730.885.380
xref: NIF_GrossAnatomy:birnlex_1551
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002742
name: lamina of septum pellucidum
def: "One of two layers of both white and gray matter of the septum pellucidum. During fetal development there is a space between the two laminae called the cavum septum pellucidum which, in ninety per cent of cases, disappears during infancy." [Wikipedia:Septum_pellucidum#Layers]
comment: editor note
synonym: "laminae septi pellucidi" EXACT PLURAL []
synonym: "septum pellucidum lamina" EXACT [FMA:62472]
xref: FMA:62472
xref: NIF_GrossAnatomy:birnlex_1554
xref: SCTID:12164006
is_a: UBERON:0011299 ! white matter of telencephalon
relationship: part_of UBERON:0004714 {source="FMA"} ! septum pellucidum
[Term]
id: UBERON:0002743
name: basal forebrain
def: "The basal forebrain is a collection of structures located ventrally to the striatum. It is considered to be the major cholinergic output of the CNS. It includes a group of structures that lie near the bottom of the front of the brain, including the nucleus basalis, diagonal band of Broca, and medial septal nuclei. These structures are important in the production of acetylcholine, which is then distributed widely throughout the brain. Acetylcholine affects the ability of brain cells to transmit information to one another, and also encourages plasticity, or learning. Thus, damage to the basal forebrain can reduce the amount of acetylcholine in the brain and impair learning. This may be one reason why basal forebrain damage can result in memory impairments such as amnesia and confabulation. One common cause of basal forebrain damage is aneurysm of the anterior communicating artery. Research, conducted by investigators from Children's Hospital Boston and the University of Helsinki, ties together previous observations about sleep and finds that nitric oxide production in the basal forebrain is both necessary and sufficient to produce sleep. This structure is defined, in part, as the place where adenosine acts on A1 receptors of cholinergic neurons. This results in hyperpolarization of cholinergic neurons, which inhibits the release of acetylcholine. Acetylcholine is known to promote wakefulness in the basal forebrain. Inhibition of acetylcholine release in the basal forebrain by adenosine causes slow wave sleep. The basal forebrain and adjacent areas are a focus for sleep research. Stimulating the basal forebrain gives rise to EEG sychrony and sleep. [WP,unvetted]." [Wikipedia:Basal_forebrain]
subset: uberon_slim
synonym: "pars basalis telencephali" RELATED LATIN [Wikipedia:Basal_forebrain]
xref: BM:Tel-BF
xref: BTO:0002444
xref: FMA:77700
xref: http://upload.wikimedia.org/wikipedia/commons/a/a4/Basal_Forebrain_Monakhos_2007.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Basal_Forebrain_Monakhos_2007.png/200px-Basal_Forebrain_Monakhos_2007.png
xref: NIF_GrossAnatomy:birnlex_1560
is_a: UBERON:0002780 ! regional part of forebrain
relationship: part_of UBERON:0001890 {source="BTO"} ! forebrain
[Term]
id: UBERON:0002744
name: hilum of dentate nucleus
synonym: "dentate nuclear hilum" EXACT [FMA:72548]
xref: FMA:72548
xref: NIF_GrossAnatomy:birnlex_1561
xref: SCTID:369055003
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002745
name: ventral amygdalofugal projection
synonym: "ventral amygdalofugal pathway" EXACT [NIF_GrossAnatomy:birnlex_1563]
xref: FMA:61977
xref: NIF_GrossAnatomy:birnlex_1563
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002746
name: intermediate periventricular nucleus
synonym: "intermediate periventricular nucleus of hypothalamus" EXACT [FMA:62328]
synonym: "periventricular nucleus at the tuberal level" EXACT [FMA:62328]
xref: FMA:62328
xref: NIF_GrossAnatomy:birnlex_1564
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002747
name: neodentate part of dentate nucleus
synonym: "neodentate portion of dentate nucleus" EXACT [FMA:72539]
xref: FMA:72539
xref: NIF_GrossAnatomy:birnlex_1567
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002132 ! dentate nucleus
[Term]
id: UBERON:0002748
name: medial lemniscus of medulla
def: "A medial lemniscus that is part of a medulla [Obol]." [OBOL:automatic]
synonym: "medulla medial lemniscus" EXACT [OBOL:automatic]
xref: FMA:72621
xref: NIF_GrossAnatomy:birnlex_1570
is_a: UBERON:0002678 ! regional part of medulla oblongata
is_a: UBERON:0003002 ! medial lemniscus
relationship: part_of UBERON:0000958
intersection_of: UBERON:0003002 ! medial lemniscus
intersection_of: part_of UBERON:0000958 ! medulla
relationship: part_of UBERON:0000958 ! medulla
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002749
name: regional part of cerebellar cortex
def: "A regional part of brain that is part of a cerebellar cortex [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "biological structure of brain of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "brain biological structure of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "cerebellar cortex anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "cerebellar cortex biological structure of brain" EXACT [OBOL:automatic]
synonym: "cerebellar cortex brain anatomical structure" EXACT [OBOL:automatic]
synonym: "cerebellar cortex brain biological structure" EXACT [OBOL:automatic]
synonym: "cerebellar cortex neuraxis segment" EXACT [OBOL:automatic]
synonym: "cerebellar cortex regional part of brain" EXACT [OBOL:automatic]
synonym: "cerebellar cortex segment of brain" EXACT [OBOL:automatic]
synonym: "cerebellar cortical segment" EXACT [FMA:76924]
synonym: "neuraxis segment of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "regional part of brain of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "segment of brain of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "segment of cerebellar cortex" EXACT [NIF_GrossAnatomy:birnlex_1571]
xref: FMA:76924
xref: NIF_GrossAnatomy:birnlex_1571
is_a: UBERON:0002946 ! regional part of cerebellum
is_a: UBERON:0003528 ! brain grey matter
relationship: part_of UBERON:0002129
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0002129 ! cerebellar cortex
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0002750
name: medial longitudinal fasciculus of medulla
def: "A medial longitudinal fasciculus that is part of a medulla [Obol]." [OBOL:automatic]
synonym: "medulla medial longitudinal fasciculus" EXACT [OBOL:automatic]
xref: FMA:72618
xref: NIF_GrossAnatomy:birnlex_1574
is_a: UBERON:0002309 ! medial longitudinal fasciculus
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0000958
intersection_of: UBERON:0002309 ! medial longitudinal fasciculus
intersection_of: part_of UBERON:0000958 ! medulla
relationship: part_of UBERON:0000958 ! medulla
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002751
name: inferior temporal gyrus
def: "The inferior temporal gyrus is placed below the middle temporal sulcus, and is connected behind with the inferior occipital gyrus; it also extends around the infero-lateral border on to the inferior surface of the temporal lobe, where it is limited by the inferior sulcus. This region is one of the higher levels of the ventral stream of visual processing, associated with the representation of complex object features, such as global shape. It may also be involved in face perception. [WP,unvetted]." [Wikipedia:Inferior_temporal_gyrus]
subset: uberon_slim
synonym: "gyrus temporalis inferior" EXACT [NIF_GrossAnatomy:birnlex_1577]
synonym: "gyrus temporalis inferior" RELATED LATIN [Wikipedia:Inferior_temporal_gyrus]
synonym: "lateral occipitotemporal gyrus (heimer-83)" EXACT []
xref: BM:Tel-ITG
xref: FMA:61907
xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Gray726.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray726.png/200px-Gray726.png
xref: ncithesaurus:Inferior_Temporal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1577
xref: SCTID:279191005
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002752
name: olivocerebellar tract
def: "The olivocerebellar tract (olivocerebellar fibers) leaves the olivary nucleus and pass out through the hilum and decussate with those from the opposite olive in the raphé, then as internal arcuate fibers they pass partly through and partly around the opposite olive and enter the inferior peduncle to be distributed to the cerebellar hemisphere of the opposite side from which they arise. They terminate directly on Purkinje cells as the climbing fiber input system. [WP,unvetted]." [Wikipedia:Olivocerebellar_tract]
subset: uberon_slim
synonym: "t. olivocerebellaris" RELATED LATIN [Wikipedia:Olivocerebellar_tract]
xref: FMA:72638
xref: http://upload.wikimedia.org/wikipedia/commons/9/93/Gray695.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png
xref: NIF_GrossAnatomy:birnlex_1579
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002753
name: posterior spinocerebellar tract
def: "The dorsal spinocerebellar tract (posterior spinocerebellar tract, Flechsig's fasciculus, Flechsig's tract) conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the ventral spinocerebellar tract. Proprioceptive information is taken to the via central processes of dorsal root ganglia (first order neurons). These central processes travel through the dorsal horn where they synapse with second order neurons of Clarke's nucleus. Axon fibers from Clarke's Nucleus convey this proprioceptive information in the spinal cord in the peripheral region of the posteriolateral funiculus ipsilaterally until it reaches the cerebellum, where unconscious proprioceptive information is processed. This tract involves two neurons and ends up on the same side of the body. [WP,unvetted]." [Wikipedia:Dorsal_spinocerebellar_tract]
subset: uberon_slim
synonym: "dorsal spinocerebellar tract" EXACT [FMA:72641]
synonym: "flechsig's tract" EXACT [FMA:72641]
xref: BM:DSCT
xref: FMA:72641
xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png
xref: NIF_GrossAnatomy:birnlex_1585
xref: SCTID:369284002
is_a: UBERON:0001018 ! axon tract
is_a: UBERON:0002316 ! white matter
relationship: part_of UBERON:0005413 ! spinocerebellar tract
[Term]
id: UBERON:0002754
name: predorsal bundle
synonym: "predorsal bundle of edinger" EXACT []
synonym: "predorsal fasciculus" EXACT [FMA:72614]
synonym: "tectospinal fibers" EXACT [FMA:72614]
xref: FMA:72614
xref: NIF_GrossAnatomy:birnlex_1590
is_a: UBERON:0005838 ! fasciculus of brain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002755
name: pyramidal decussation
def: "When these pyramidal fibers are traced downward, it is found that some three-fifths or more of them leave the pyramids in successive bundles, and decussate in the anterior median fissure of the medulla oblongata, forming what is termed the pyramidal decussation or motor decussation. Having crossed the middle line, they pass down in the posterior part of the lateral funiculus as the lateral cerebrospinal fasciculus. [WP,unvetted]." [Wikipedia:Decussation_of_pyramids]
subset: uberon_slim
synonym: "corticospinal decussation" EXACT [FMA:72633]
synonym: "decussatio pyramidum" EXACT [FMA:72633, FMA:TA]
synonym: "decussatio pyramidum medullae oblongatae" EXACT [FMA:72633, FMA:TA]
synonym: "decussation of corticospinal tract" EXACT [FMA:72633]
synonym: "decussation of pyramidal tract fibers" EXACT [FMA:72633]
synonym: "decussation of pyramids" EXACT [FMA:72633]
synonym: "decussation of pyramids of medulla" EXACT [FMA:72633]
synonym: "decussation of the pyramidal tract" EXACT [NIF_GrossAnatomy:birnlex_1594]
synonym: "motor decussation" EXACT [FMA:72633]
synonym: "motor decussation of medulla" EXACT [FMA:72633]
synonym: "pyramidal decussation (pourfour du petit)" EXACT [NIF_GrossAnatomy:birnlex_1594]
xref: BM:Me-PyX
xref: FMA:72633
xref: http://upload.wikimedia.org/wikipedia/commons/a/ac/Gray684.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Gray684.png/200px-Gray684.png
xref: NIF_GrossAnatomy:birnlex_1594
xref: SCTID:369058001
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0007418 ! decussation of neuraxis
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002756
name: anterior cingulate gyrus
subset: uberon_slim
xref: FMA:61916
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray727_anterior_cingulate_cortex.png/200px-Gray727_anterior_cingulate_cortex.png
xref: NIF_GrossAnatomy:birnlex_1603
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0002967 ! cingulate gyrus
relationship: part_of UBERON:0009835 ! anterior cingulate cortex
[Term]
id: UBERON:0002757
name: regional part of epithalamus
def: "A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of epithalamus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of epithalamus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of epithalamus" EXACT [OBOL:automatic]
synonym: "brain biological structure of epithalamus" EXACT [OBOL:automatic]
synonym: "epithalamus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "epithalamus biological structure of brain" EXACT [OBOL:automatic]
synonym: "epithalamus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "epithalamus brain biological structure" EXACT [OBOL:automatic]
synonym: "epithalamus neuraxis segment" EXACT [OBOL:automatic]
synonym: "epithalamus regional part of brain" EXACT [OBOL:automatic]
synonym: "epithalamus segment" EXACT [FMA:62013]
synonym: "epithalamus segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of epithalamus" EXACT [OBOL:automatic]
synonym: "regional part of brain of epithalamus" EXACT [OBOL:automatic]
synonym: "segment of brain of epithalamus" EXACT [OBOL:automatic]
synonym: "segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607]
xref: FMA:62013
xref: NIF_GrossAnatomy:birnlex_1607
is_a: UBERON:0002784 ! regional part of diencephalon
relationship: part_of UBERON:0001899
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001899 ! epithalamus
relationship: part_of UBERON:0001899 ! epithalamus
[Term]
id: UBERON:0002758
name: dorsal nucleus of medial geniculate body
synonym: "dorsal nucleus of medial geniculate complex" EXACT [FMA:62216]
synonym: "medial geniculate complex, dorsal part" EXACT [NIF_GrossAnatomy:birnlex_1608]
synonym: "medial geniculate nucleus, dorsal part" EXACT [NIF_GrossAnatomy:birnlex_1608]
synonym: "nucleus corporis geniculati medialis, pars dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1608]
synonym: "nucleus dorsalis coporis geniculati medialis" RELATED [BTO:0002673]
synonym: "nucleus geniculatus medialis fibrosus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1608]
synonym: "nucleus geniculatus medialis pars dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1608]
xref: ABA:MGd
xref: BTO:0002673
xref: FMA:62216
xref: NIF_GrossAnatomy:birnlex_1608
property_value: "spatially_disjoint_from" UBERON:0002759
property_value: "spatially_disjoint_from" UBERON:0002985
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001927 ! medial geniculate body
[Term]
id: UBERON:0002759
name: magnocellular nucleus of medial geniculate body
synonym: "corpus geniculatus mediale, pars magnocelluaris" EXACT [NIF_GrossAnatomy:birnlex_1612]
synonym: "magnocelluar nucleus of medial geniculate complex" EXACT [NIF_GrossAnatomy:birnlex_1612]
synonym: "medial division of medial geniculate body" EXACT [FMA:62218]
synonym: "medial geniculate complex, medial part" EXACT [FMA:62218]
synonym: "medial geniculate nucleus, medial part" EXACT [FMA:62218]
synonym: "medial magnocellular nucleus of medial geniculate body" EXACT [FMA:62218]
synonym: "medial nucleus of medial geniculate body" EXACT [FMA:62218]
synonym: "nucleus corporis geniculati medialis, pars magnocelluaris" EXACT [NIF_GrossAnatomy:birnlex_1612]
synonym: "nucleus geniculatus medialis magnocelluaris (hassler)" EXACT [NIF_GrossAnatomy:birnlex_1612]
synonym: "nucleus geniculatus medialis, pars magnocelluaris" EXACT [NIF_GrossAnatomy:birnlex_1612]
synonym: "nucleus medialis magnocellularis corporis geniculati medialis" RELATED [BTO:0002672]
xref: ABA:MGm
xref: BTO:0002672
xref: FMA:62218
xref: NIF_GrossAnatomy:birnlex_1612
property_value: "spatially_disjoint_from" UBERON:0002758
property_value: "spatially_disjoint_from" UBERON:0002985
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001927 ! medial geniculate body
[Term]
id: UBERON:0002760
name: ventral corticospinal tract
def: "The anterior corticospinal tract (also called the ventral corticospinal tract, medial corticospinal tract, direct pyramidal tract, or anterior cerebrospinal fasciculus) is a small bundle of descending fibers that connect the cerebral cortex to the spinal cord. It is usually small, varying inversely in size with the lateral corticospinal tract, which is the main part of the corticospinal tract. It lies close to the anterior median fissure, and is present only in the upper part of the medulla spinalis; gradually diminishing in size as it descends, it ends about the middle of the thoracic region. It consists of descending fibers which arise from cells in the motor area of the cerebral hemisphere of the same side, and which, as they run downward in the medulla spinalis, cross in succession through the anterior white commissure to the opposite side, where they end, either directly or indirectly, by arborizing around the motor neurons in the anterior column. A few of its fibers are said to pass to the lateral column of the same side and to the gray matter at the base of the posterior column. They conduct voluntary motor impulses from the precentral gyrus to the motor centers of the cord. [WP,unvetted]." [Wikipedia:Ventral_corticospinal_tract]
subset: uberon_slim
synonym: "anterior corticospinal tract" EXACT [FMA:72636]
synonym: "anterior pyramidal tract" EXACT [FMA:72636]
synonym: "anterior tract of turck" EXACT []
synonym: "bundle of turck" EXACT []
synonym: "column of turck" EXACT []
xref: FMA:72636
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png
xref: NIF_GrossAnatomy:birnlex_1618
xref: SCTID:369092003
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002761
name: inferior frontal sulcus
def: "The inferior frontal sulcus is a sulcus between the middle frontal gyrus and the inferior frontal gyrus. [WP,unvetted]." [Wikipedia:Inferior_frontal_sulcus]
subset: uberon_slim
synonym: "inferior frontal fissure" EXACT [FMA:83757]
synonym: "sulcus f2" EXACT [FMA:83757]
synonym: "sulcus frontalis inferior" RELATED LATIN [Wikipedia:Inferior_frontal_sulcus]
xref: FMA:83757
xref: http://upload.wikimedia.org/wikipedia/commons/7/72/Gray726_Inferior_frontal_sulcus.svg
xref: ncithesaurus:Inferior_Frontal_Sulcus
xref: NIF_GrossAnatomy:birnlex_1619
xref: SCTID:279343004
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002762
name: internal medullary lamina of thalamus
synonym: "internal medullary lamina" EXACT [FMA:62079]
synonym: "internal medullary lamina of thalamus" EXACT [FMA:62079]
synonym: "lamina medullaris medialis thalami" EXACT [FMA:62079, FMA:TA]
xref: FMA:62079
xref: NIF_GrossAnatomy:birnlex_1621
xref: SCTID:369161003
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002763
name: accessory medullary lamina
synonym: "accessory medullar lamina of pallidum" EXACT [NIF_GrossAnatomy:birnlex_1626]
synonym: "accessory medullary lamina" EXACT [FMA:62471]
synonym: "accessory medullary lamina of corpus striatum" EXACT [FMA:62471]
synonym: "accessory medullary lamina of globus pallidus" EXACT [FMA:62471]
synonym: "incomplete medullary lamina of globus pallidus" EXACT [FMA:62471]
synonym: "lamina medullaris accessoria corporis striati" EXACT [FMA:62471, FMA:TA]
xref: FMA:62471
xref: NIF_GrossAnatomy:birnlex_1626
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011299 ! white matter of telencephalon
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002764
name: inferior precentral sulcus
synonym: "inferior part of precentral fissure" EXACT [FMA:83764]
synonym: "sulcus praecentralis inferior" EXACT [NIF_GrossAnatomy:birnlex_1627]
synonym: "sulcus precentralis inferior" EXACT [NIF_GrossAnatomy:birnlex_1627]
xref: FMA:83764
xref: NIF_GrossAnatomy:birnlex_1627
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002765
name: lateral medullary lamina
synonym: "external medulary lamina of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1634]
synonym: "external medulary lamina of lentiform nucleus" EXACT [NIF_GrossAnatomy:birnlex_1634]
synonym: "external medullary lamina of corpus striatum" EXACT [FMA:62469]
synonym: "external medullary lamina of globus pallidus" EXACT [FMA:62469]
synonym: "external medullary lamina of lentiform nucleus" EXACT [FMA:62469]
synonym: "lamina medullaris externa corporis striati" EXACT [FMA:62469, FMA:TA]
synonym: "lamina medullaris lateralis corporis striati" EXACT [FMA:62469, FMA:TA]
synonym: "lateral medulary lamina of globus pallidus" EXACT [NIF_GrossAnatomy:birnlex_1634]
synonym: "lateral medulary stria" EXACT [NIF_GrossAnatomy:birnlex_1634]
synonym: "lateral medullary lamina" EXACT [FMA:62469]
synonym: "lateral medullary lamina of corpus striatum" EXACT [FMA:62469]
synonym: "lateral medullary lamina of globus pallidus" EXACT [FMA:62469]
synonym: "lateral medullary lamina of pallidum" EXACT [FMA:62469]
synonym: "lateral medullary stria" EXACT [FMA:62469]
synonym: "medulary lamina of pallidum" EXACT [NIF_GrossAnatomy:birnlex_1634]
synonym: "outer medulary lamina" EXACT [NIF_GrossAnatomy:birnlex_1634]
synonym: "outer medullary lamina" EXACT [FMA:62469]
xref: FMA:62469
xref: NIF_GrossAnatomy:birnlex_1634
xref: SCTID:369204004
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011299 ! white matter of telencephalon
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002766
name: fusiform gyrus
def: "The fusiform gyrus is part of the temporal lobe. It is also known as the (discontinuous) occipitotemporal gyrus. Other sources have the fusiform gyrus above the occipitotemporal gyrus and underneath the parahippocampal gyrus. [WP,unvetted]." [Wikipedia:Fusiform_gyrus]
subset: uberon_slim
synonym: "gyrus fusiformis" RELATED LATIN [Wikipedia:Fusiform_gyrus]
synonym: "gyrus occipitotemporalis lateralis" EXACT [FMA:61908, FMA:TA]
synonym: "lateral occipitotemporal gyrus" EXACT [FMA:61908]
synonym: "medial occipitotemporal gyrus-1 (heimer)" EXACT []
synonym: "occipitotemporal gyrus" EXACT [FMA:61908]
xref: FMA:61908
xref: http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray727.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray727.svg/200px-Gray727.svg.png
xref: NIF_GrossAnatomy:birnlex_1641
xref: SCTID:110678003
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002767
name: inferior rostral sulcus
synonym: "sulcus rostralis inferior" EXACT [NIF_GrossAnatomy:birnlex_1642]
xref: FMA:83767
xref: NIF_GrossAnatomy:birnlex_1642
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002768
name: vestibulospinal tract
def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord[GO]." [Wikipedia:Vestibulospinal_tract]
subset: uberon_slim
subset: vertebrate_core
synonym: "tractus vestibulospinalis" RELATED LATIN [Wikipedia:Vestibulospinal_tract]
synonym: "vestibulo-spinal tract" EXACT [ZFA:0000709]
xref: FMA:72646
xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png
xref: NIF_GrossAnatomy:birnlex_1643
xref: SCTID:369289007
xref: TAO:0000709
xref: ZFA:0000709
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002769
name: superior temporal gyrus
def: "A gyrus (plural gyri) is a bump or ridge on the surface of the brain. The superior temporal gyrus is one of three (sometimes two) gyri in the temporal lobe of the human brain. The superior temporal gyrus is bounded by: the lateral sulcus above; the superior temporal sulcus (not always present or visible) below; an imaginary line drawn from the preoccipital notch to the lateral sulcus posteriorly. The superior temporal gyrus contains several important structures of the brain, including: Brodmann areas 41 and 42, marking the location of the primary auditory cortex, the cortical region responsible for the sensation of sound; Wernicke's area, Brodmann 22p, an important region for the processing of speech so that it can be understood as language. [WP,unvetted]." [Wikipedia:Superior_temporal_gyrus]
subset: uberon_slim
synonym: "gyrus temporalis superior" EXACT [NIF_GrossAnatomy:birnlex_1648]
synonym: "gyrus temporalis superior" RELATED LATIN [Wikipedia:Superior_temporal_gyrus]
xref: BM:Tel-STG
xref: EFO:0001944
xref: FMA:61905
xref: http://upload.wikimedia.org/wikipedia/commons/1/1d/Superior_temporal_gyrus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/Superior_temporal_gyrus.png/200px-Superior_temporal_gyrus.png
xref: ncithesaurus:Superior_Temporal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1648
xref: SCTID:362345008
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002770
name: posterior hypothalamic region
def: "The part of the hypothalamus posterior to the middle region consisting of several nuclei including the medial mamillary nucleus, lateral mamillary nucleus, and posterior hypothalamic nucleus (posterior hypothalamic area). The posterior hypothalamic area is concerned with control of sympathetic responses and is sensitive to conditions of decreasing temperature and controls the mechanisms for the conservation and increased production of heat." [MESH:A.08.186.211.730.385.357.362]
synonym: "mammillary level of hypothalamus" EXACT [FMA:62029]
synonym: "mammillary region" EXACT [FMA:62029]
synonym: "posterior hypothalamus" EXACT [FMA:62029]
xref: FMA:62029
xref: GAID:651
xref: MESH:A.08.186.211.730.385.357.362
xref: NIF_GrossAnatomy:birnlex_1651
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002771
name: middle temporal gyrus
def: "Middle temporal gyrus is a gyrus in the brain on the Temporal lobe. It is located between the superior temporal gyrus and inferior temporal gyrus. Its exact function is unknown, but it has been connected with processes as different as contemplating distance, recognition of known faces, and accessing word meaning while reading. [WP,unvetted]." [Wikipedia:Middle_temporal_gyrus]
subset: uberon_slim
synonym: "gyrus temporalis medius" EXACT [NIF_GrossAnatomy:birnlex_1653]
synonym: "intermediate temporal gyrus" EXACT [FMA:61906]
synonym: "medial temporal gyrus" RELATED [Wikipedia:Middle_temporal_gyrus]
xref: EFO:0002466
xref: FMA:61906
xref: http://upload.wikimedia.org/wikipedia/commons/4/49/WOROI_60_loc.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/WOROI_60_loc.png/200px-WOROI_60_loc.png
xref: ncithesaurus:Middle_Temporal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1653
xref: SCTID:279190006
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002772
name: olfactory sulcus
def: "The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract. [WP,unvetted]." [Wikipedia:Olfactory_sulcus]
subset: uberon_slim
synonym: "olfactory groove" EXACT [NIF_GrossAnatomy:birnlex_1655]
synonym: "sulcus olfactorius" EXACT [NIF_GrossAnatomy:birnlex_1655]
synonym: "sulcus olfactorius lobi frontalis" RELATED LATIN [Wikipedia:Olfactory_sulcus]
xref: BM:Tel-Cx-OFS
xref: FMA:83769
xref: http://upload.wikimedia.org/wikipedia/commons/9/9a/Gray729_olfactory_sulcus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray729_olfactory_sulcus.png/200px-Gray729_olfactory_sulcus.png
xref: ncithesaurus:Olfactory_Sulcus
xref: NIF_GrossAnatomy:birnlex_1655
xref: SCTID:279358007
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002773
name: anterior transverse temporal gyrus
synonym: "anterior transverse convolution of heschl" EXACT [NIF_GrossAnatomy:birnlex_1657]
synonym: "anterior transverse temporal convolution of heschl" EXACT []
synonym: "first transverse gyrus of heschl" EXACT []
synonym: "great transverse gyrus of heschl" EXACT []
xref: FMA:61909
xref: NIF_GrossAnatomy:birnlex_1657
xref: SCTID:279192003
is_a: UBERON:0003939 ! transverse gyrus of Heschl
[Term]
id: UBERON:0002774
name: posterior transverse temporal gyrus
synonym: "posterior transverse convolution of heschl" EXACT [NIF_GrossAnatomy:birnlex_1661]
synonym: "posterior transverse temporal convolution of heschl" EXACT []
xref: FMA:61910
xref: NIF_GrossAnatomy:birnlex_1661
xref: SCTID:279193008
is_a: UBERON:0003939 ! transverse gyrus of Heschl
[Term]
id: UBERON:0002775
name: olivocochlear bundle
synonym: "bundle of rasmussen" EXACT []
synonym: "efferent cochlear bundle" EXACT [FMA:72485]
synonym: "olivocochlear bundle of rasmussen" EXACT []
synonym: "olivocochlear tract" EXACT [FMA:72485]
synonym: "tractus olivocochlearis" EXACT [FMA:72485, FMA:TA]
xref: FMA:72485
xref: NIF_GrossAnatomy:birnlex_1666
xref: SCTID:369030009
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002776
name: ventral nuclear group
def: "The ventral nuclear group is a collection of nuclei on the ventral side of the thalamus. According to MeSH, it consists of the following: ventral anterior nucleus ventral lateral nucleus ventral posterior nucleus [WP,unvetted]." [Wikipedia:Ventral_nuclear_group]
comment: Editors note: consider splitting nucleus from nuclear group
subset: uberon_slim
synonym: "nuclei ventrales thalami" EXACT [NIF_GrossAnatomy:birnlex_1669]
synonym: "ventral group of dorsal thalamus" EXACT [NIF_GrossAnatomy:birnlex_1669]
synonym: "ventral nuclear group" EXACT [FMA:62022]
synonym: "ventral nuclear group of thalamus" EXACT [FMA:62022]
synonym: "ventral nuclear mass" EXACT [FMA:62022]
synonym: "ventral nuclei of thalamus" EXACT [FMA:62022]
synonym: "ventral tier thalamic nuclei" EXACT [FMA:62022]
xref: ABA:VENT
xref: BTO:0002467
xref: EV:0100206
xref: FMA:62022
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_1669
xref: SCTID:279125005
xref: ZFA:0005576
property_value: "spatially_disjoint_from" UBERON:0002144
property_value: "spatially_disjoint_from" UBERON:0002704
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002777
name: neostriatum
subset: uberon_slim
xref: BTO:0000418
xref: GAID:669
is_obsolete: true
[Term]
id: UBERON:0002778
name: ventral pallidum
def: "Part of the globus pallidus, consistingo of the more medial of the two segments. In some species, e.g., primates, it is separated from the lateral segment by the fibers of the medial medullary lamina (MM)." [NIF_GrossAnatomy:birnlex_1674]
synonym: "ventral globus pallidus" RELATED [BTO:0004375]
synonym: "ventral pallidum" EXACT [NIF_GrossAnatomy:birnlex_1674]
xref: ABA:PALv
xref: BM:Tel-VPa
xref: BTO:0004375
xref: FMA:77613
xref: NIF_GrossAnatomy:birnlex_1674
is_a: UBERON:0006514 {source="FMA"} ! pallidum
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001875 {source="NIF-def", source="BTO"} ! globus pallidus
[Term]
id: UBERON:0002779
name: lateral superior olivary nucleus
def: "In anatomy, the olivary bodies or simply olives (Latin oliva and olivae, singular and plural, respectively) are a pair of prominent oval structures in the medulla oblongata, the lower portion of the brainstem. They contain the olivary nuclei. [WP,unvetted]." [Wikipedia:Olivary_body]
subset: uberon_slim
synonym: "accessory olivary nucleus" EXACT [FMA:72472]
synonym: "accessory superior olivary nucleus" EXACT [FMA:72472]
synonym: "accessory superior olive" EXACT [FMA:72472]
synonym: "lateral superior olive" EXACT [FMA:72472]
synonym: "superior olivary nucleus, lateral part" EXACT [FMA:72472]
xref: BM:Pons-SOL
xref: FMA:72472
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray679.png/200px-Gray679.png
xref: NIF_GrossAnatomy:birnlex_1675
xref: SCTID:360477003
is_a: UBERON:0007247 ! superior olivary nucleus
[Term]
id: UBERON:0002780
name: regional part of forebrain
def: "A regional part of brain that is part of a forebrain [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of forebrain" EXACT [OBOL:automatic]
synonym: "biological structure of brain of forebrain" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of forebrain" EXACT [OBOL:automatic]
synonym: "brain biological structure of forebrain" EXACT [OBOL:automatic]
synonym: "forebrain anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "forebrain biological structure of brain" EXACT [OBOL:automatic]
synonym: "forebrain brain anatomical structure" EXACT [OBOL:automatic]
synonym: "forebrain brain biological structure" EXACT [OBOL:automatic]
synonym: "forebrain neuraxis segment" EXACT [OBOL:automatic]
synonym: "forebrain regional part of brain" EXACT [OBOL:automatic]
synonym: "forebrain segment" EXACT [FMA:61996]
synonym: "forebrain segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of forebrain" EXACT [OBOL:automatic]
synonym: "regional part of brain of forebrain" EXACT [OBOL:automatic]
synonym: "segment of brain of forebrain" EXACT [OBOL:automatic]
synonym: "segment of forebrain" EXACT [NIF_GrossAnatomy:birnlex_1677]
xref: FMA:61996
xref: NIF_GrossAnatomy:birnlex_1677
is_a: UBERON:0002616 ! regional part of brain
relationship: part_of UBERON:0001890
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001890 ! forebrain
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0002781
name: caudal part of ventral posterolateral nucleus
synonym: "ventral posterior lateral nucleus (ilinsky)" EXACT []
synonym: "ventral posterolateral nucleus, caudal part" EXACT [FMA:62206]
synonym: "ventral posterolateral thalamic nucleus, caudal part" EXACT [FMA:62206]
xref: FMA:62206
xref: NIF_GrossAnatomy:birnlex_1681
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002782
name: medial superior olivary nucleus
def: "The superior olivary complex (or SOC or superior olive) is a small mass of gray substance situated on the dorsal surface of the lateral part of the trapezoid body. Small in humans, but well developed in certain animals, it exhibits similar structure as the inferior olivary nucleus, and is situated immediately above it. Some of the fibers of the trapezoid body end by arborizing around the cells of this nucleus, while others arise from these cells. [WP,unvetted]." [Wikipedia:Superior_olivary_complex]
subset: uberon_slim
synonym: "chief nucleus of superior olive" EXACT [FMA:72473]
synonym: "chief superior olivary nucleus" EXACT [FMA:72473]
synonym: "main superior olivary nucleus" EXACT [FMA:72473]
synonym: "medial superior olive" EXACT [FMA:72473]
synonym: "nucleus laminaris" EXACT [NIF_GrossAnatomy:birnlex_1682]
synonym: "principal superior olivary nucleus" EXACT [FMA:72473]
synonym: "superior olivary nucleus, medial part" EXACT [FMA:72473]
xref: BM:Pons-SOM
xref: FMA:72473
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray713.png/200px-Gray713.png
xref: NIF_GrossAnatomy:birnlex_1682
is_a: UBERON:0007247 ! superior olivary nucleus
[Term]
id: UBERON:0002783
name: central tegmental tract of pons
xref: FMA:72494
xref: NIF_GrossAnatomy:birnlex_1683
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002784
name: regional part of diencephalon
def: "A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of between brain" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of diencephalon" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of interbrain" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic]
synonym: "between brain anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "between brain biological structure of brain" EXACT [OBOL:automatic]
synonym: "between brain brain anatomical structure" EXACT [OBOL:automatic]
synonym: "between brain brain biological structure" EXACT [OBOL:automatic]
synonym: "between brain neuraxis segment" EXACT [OBOL:automatic]
synonym: "between brain regional part of brain" EXACT [OBOL:automatic]
synonym: "between brain segment of brain" EXACT [OBOL:automatic]
synonym: "biological structure of brain of between brain" EXACT [OBOL:automatic]
synonym: "biological structure of brain of diencephalon" EXACT [OBOL:automatic]
synonym: "biological structure of brain of interbrain" EXACT [OBOL:automatic]
synonym: "biological structure of brain of mature diencephalon" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of between brain" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of diencephalon" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of interbrain" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic]
synonym: "brain biological structure of between brain" EXACT [OBOL:automatic]
synonym: "brain biological structure of diencephalon" EXACT [OBOL:automatic]
synonym: "brain biological structure of interbrain" EXACT [OBOL:automatic]
synonym: "brain biological structure of mature diencephalon" EXACT [OBOL:automatic]
synonym: "diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "diencephalon biological structure of brain" EXACT [OBOL:automatic]
synonym: "diencephalon brain anatomical structure" EXACT [OBOL:automatic]
synonym: "diencephalon brain biological structure" EXACT [OBOL:automatic]
synonym: "diencephalon neuraxis segment" EXACT [OBOL:automatic]
synonym: "diencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "diencephalon segment" EXACT [FMA:62005]
synonym: "diencephalon segment of brain" EXACT [OBOL:automatic]
synonym: "interbrain anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "interbrain biological structure of brain" EXACT [OBOL:automatic]
synonym: "interbrain brain anatomical structure" EXACT [OBOL:automatic]
synonym: "interbrain brain biological structure" EXACT [OBOL:automatic]
synonym: "interbrain neuraxis segment" EXACT [OBOL:automatic]
synonym: "interbrain regional part of brain" EXACT [OBOL:automatic]
synonym: "interbrain segment of brain" EXACT [OBOL:automatic]
synonym: "mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "mature diencephalon biological structure of brain" EXACT [OBOL:automatic]
synonym: "mature diencephalon brain anatomical structure" EXACT [OBOL:automatic]
synonym: "mature diencephalon brain biological structure" EXACT [OBOL:automatic]
synonym: "mature diencephalon neuraxis segment" EXACT [OBOL:automatic]
synonym: "mature diencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "mature diencephalon segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of between brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of diencephalon" EXACT [OBOL:automatic]
synonym: "neuraxis segment of interbrain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of mature diencephalon" EXACT [OBOL:automatic]
synonym: "regional part of brain of between brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of diencephalon" EXACT [OBOL:automatic]
synonym: "regional part of brain of interbrain" EXACT [OBOL:automatic]
synonym: "regional part of brain of mature diencephalon" EXACT [OBOL:automatic]
synonym: "segment of brain of between brain" EXACT [OBOL:automatic]
synonym: "segment of brain of diencephalon" EXACT [OBOL:automatic]
synonym: "segment of brain of interbrain" EXACT [OBOL:automatic]
synonym: "segment of brain of mature diencephalon" EXACT [OBOL:automatic]
synonym: "segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685]
xref: FMA:62005
xref: NIF_GrossAnatomy:birnlex_1685
xref: SCTID:119264001
is_a: UBERON:0002780 ! regional part of forebrain
relationship: part_of UBERON:0001894
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002785
name: regional part of lateral hypothalamic region
synonym: "lateral hypothalamic region segment" EXACT [FMA:62312]
synonym: "segment of lateral hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_1687]
xref: FMA:62312
xref: NIF_GrossAnatomy:birnlex_1687
is_a: UBERON:0003048 ! regional part of hypothalamus
relationship: part_of UBERON:0002430
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0002430 ! lateral hypothalamic area
relationship: part_of UBERON:0002430 ! lateral hypothalamic area
[Term]
id: UBERON:0002786
name: abducens nerve fibers
synonym: "abducens nerve fibers" EXACT [FMA:72491]
synonym: "abducens nerve tract" EXACT [FMA:72491]
synonym: "central part of abducens nerve" EXACT [FMA:72491]
synonym: "root of abducens nerve" EXACT [FMA:72491]
xref: FMA:72491
xref: NIF_GrossAnatomy:birnlex_1689
is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve
relationship: adjacent_to UBERON:0001896 {source="ZFA-abduced"} ! medulla oblongata
[Term]
id: UBERON:0002787
name: decussation of trochlear nerve
synonym: "decussation of trochlear nerve (IV)" EXACT [FMA:72488]
synonym: "trochlear neural decussation" EXACT [FMA:72488]
xref: FMA:72488
xref: NIF_GrossAnatomy:birnlex_1690
is_a: UBERON:0007418 ! decussation of neuraxis
[Term]
id: UBERON:0002788
name: anterior nuclear group
def: "The anterior nuclei of thalamus (or anterior nuclear group) are collection of nuclei at the rostral end of the dorsal thalamus. [WP,unvetted]." [Wikipedia:Anterior_nuclear_group]
subset: uberon_slim
subset: vertebrate_core
synonym: "anterior nuclear group" EXACT [FMA:62019]
synonym: "anterior nuclear group of thalamus" EXACT [FMA:62019]
synonym: "anterior nuclei of thalamus" EXACT [FMA:62019]
synonym: "anterior nucleus of thalamus" EXACT [FMA:62019]
synonym: "anterior thalamic group" EXACT [MA:0000861]
synonym: "anterior thalamic nuclei" EXACT [FMA:62019]
synonym: "anterior thalamus" EXACT [NIF_GrossAnatomy:birnlex_1692]
synonym: "nuclei anterior thalami" EXACT [NIF_GrossAnatomy:birnlex_1692]
synonym: "nuclei anteriores (thalami)" EXACT [NIF_GrossAnatomy:birnlex_1692]
synonym: "nuclei anteriores thalami" EXACT [NIF_GrossAnatomy:birnlex_1692]
synonym: "nuclei thalamicus anterior" EXACT [NIF_GrossAnatomy:birnlex_1692]
xref: ABA:ATN
xref: EV:0100196
xref: FMA:62019
xref: GAID:658
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: MA:0000861
xref: MESH:A.08.186.211.730.385.826.701.080
xref: NIF_GrossAnatomy:birnlex_1692
xref: SCTID:279124009
xref: TAO:0000427
xref: ZFA:0000427
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0004703 {source="MA"} ! dorsal thalamus
[Term]
id: UBERON:0002789
name: regional part of posterior hypothalamic region
def: "A regional part of brain that is part of a posterior hypothalamic region [Obol]." [OBOL:automatic]
synonym: "posterior hypothalamic region segment" EXACT [FMA:62311]
synonym: "segment of posterior hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_1697]
xref: FMA:62311
xref: NIF_GrossAnatomy:birnlex_1697
is_a: UBERON:0003048 ! regional part of hypothalamus
relationship: part_of UBERON:0002770
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0002770 ! posterior hypothalamic region
relationship: part_of UBERON:0002770 ! posterior hypothalamic region
[Term]
id: UBERON:0002790
name: dorsal acoustic stria
synonym: "posterior acoustic stria" EXACT [FMA:72496]
synonym: "stria cochlearis posterior" EXACT [FMA:72496, FMA:TA]
xref: FMA:72496
xref: NIF_GrossAnatomy:birnlex_1698
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002791
name: regional part of telencephalon
def: "A regional part of brain that is part of a telencephalon [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of telencephalon" EXACT [OBOL:automatic]
synonym: "biological structure of brain of telencephalon" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of telencephalon" EXACT [OBOL:automatic]
synonym: "brain biological structure of telencephalon" EXACT [OBOL:automatic]
synonym: "neuraxis segment of telencephalon" EXACT [OBOL:automatic]
synonym: "regional part of brain of telencephalon" EXACT [OBOL:automatic]
synonym: "segment of brain of telencephalon" EXACT [OBOL:automatic]
synonym: "segment of telencephalon" EXACT [NIF_GrossAnatomy:birnlex_1700]
synonym: "telencephalon anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "telencephalon biological structure of brain" EXACT [OBOL:automatic]
synonym: "telencephalon brain anatomical structure" EXACT [OBOL:automatic]
synonym: "telencephalon brain biological structure" EXACT [OBOL:automatic]
synonym: "telencephalon neuraxis segment" EXACT [OBOL:automatic]
synonym: "telencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "telencephalon segment" EXACT [FMA:62374]
synonym: "telencephalon segment of brain" EXACT [OBOL:automatic]
xref: FMA:62374
xref: NIF_GrossAnatomy:birnlex_1700
is_a: UBERON:0002780 ! regional part of forebrain
relationship: part_of UBERON:0001893
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002792
name: lumbar spinal cord
def: "." [Wikipedia:Lumbar_spinal_cord]
subset: uberon_slim
synonym: "lumbar segment of spinal cord" EXACT [FMA:71168]
synonym: "lumbar segments of spinal cord [1-5]" EXACT [FMA:71168]
synonym: "lumbar spinal cord" EXACT [FMA:71168]
synonym: "segmenta lumbalia medullae spinalis [1-5]" EXACT [FMA:71168, FMA:TA]
xref: FMA:71168
xref: ncithesaurus:Lumbar_Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_1704
xref: SCTID:180962006
is_a: UBERON:0005844 ! spinal cord segment
relationship: part_of UBERON:0005462
intersection_of: UBERON:0005844 ! spinal cord segment
intersection_of: part_of UBERON:0005462 ! lower back
relationship: part_of UBERON:0005462 ! lower back
[Term]
id: UBERON:0002793
name: dorsal longitudinal fasciculus of pons
def: "A dorsal longitudinal fasciculus that is part of a pons [Obol]." [OBOL:automatic]
synonym: "bundle of Schutz of pons" EXACT [OBOL:automatic]
synonym: "bundle of Schutz of pons of varolius" EXACT [OBOL:automatic]
synonym: "dorsal longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of pons" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of pons of varolius" EXACT [OBOL:automatic]
synonym: "pons bundle of Schutz" EXACT [OBOL:automatic]
synonym: "pons dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "pons fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "pons of varolius bundle of Schutz" EXACT [OBOL:automatic]
synonym: "pons of varolius dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "pons of varolius fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "pons of varolius posterior longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "pons posterior longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of pons" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic]
xref: FMA:72492
xref: NIF_GrossAnatomy:birnlex_1707
is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0000988
intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002794
name: medial longitudinal fasciculus of pons
def: "A medial longitudinal fasciculus that is part of a pons [Obol]." [OBOL:automatic]
synonym: "medial longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic]
synonym: "pons medial longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "pons of varolius medial longitudinal fasciculus" EXACT [OBOL:automatic]
xref: FMA:72493
xref: NIF_GrossAnatomy:birnlex_1708
is_a: UBERON:0002309 ! medial longitudinal fasciculus
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0000988
intersection_of: UBERON:0002309 ! medial longitudinal fasciculus
intersection_of: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002795
name: frontal pole
def: "Component of the frontal lobe. The rostral and caudal boundaries of the frontal pole are the superior frontal gyrus and the rostral division of the middle frontal gyrus respectively (Christine Fennama-Notestine)." [NIF_GrossAnatomy:birnlex_1716]
subset: uberon_slim
synonym: "polus frontalis" EXACT [NeuroNames:57]
xref: FMA:74885
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG
xref: NIF_GrossAnatomy:birnlex_1716
xref: SCTID:314144002
is_a: UBERON:0009899 ! pole of cerebral hemisphere
relationship: part_of UBERON:0001870
intersection_of: UBERON:0009899 ! pole of cerebral hemisphere
intersection_of: part_of UBERON:0001870 ! frontal cortex
relationship: part_of UBERON:0001870 ! frontal cortex
[Term]
id: UBERON:0002796
name: motor root of trigeminal nerve
comment: todo - check ZFA
synonym: "motor branch of trigeminal nerve" EXACT [FMA:52612]
synonym: "motor root of nervus v" EXACT []
synonym: "radix motoria (Nervus trigeminus [V])" EXACT [FMA:52612]
xref: FMA:52612
xref: NIF_GrossAnatomy:birnlex_1717
xref: SCTID:280189001
xref: TAO:0000650
xref: ZFA:0000650
is_a: UBERON:0004673 ! trigeminal nerve root
relationship: develops_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon
[Term]
id: UBERON:0002797
name: dorsal trigeminal tract
def: "The dorsal trigeminal tract (dorsal trigeminothalamic tract, or lemniscus) is a tract which receives signals from Meissner's corpuscles and Pacinian corpuscles. this tract arises from Principal trigeminal nucleus and terminates in the VPM nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Dorsal_trigeminal_tract]
subset: uberon_slim
synonym: "dorsal ascending trigeminal tract" EXACT [FMA:72500]
synonym: "dorsal division of trigeminal lemniscus" EXACT [FMA:72500]
synonym: "dorsal secondary ascending tract of v" EXACT []
synonym: "dorsal secondary tract of v" EXACT []
synonym: "dorsal trigeminal lemniscus" EXACT [FMA:72500]
synonym: "dorsal trigeminal pathway" EXACT [FMA:72500]
synonym: "dorsal trigeminothalamic tract" EXACT [FMA:72500]
synonym: "posterior trigeminothalamic tract" EXACT [FMA:72500]
synonym: "reticulothalamic tract" EXACT [FMA:72500]
synonym: "tractus trigeminothalamicus posterior" EXACT [FMA:72500, FMA:TA]
synonym: "uncrossed dorsal trigeminothalamic tract" EXACT [FMA:72500]
xref: FMA:72500
xref: NIF_GrossAnatomy:birnlex_1718
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002798
name: spinothalamic tract of pons
def: "Part of spinothalamic tract that is in the pontine tegmentum" [NIF_GrossAnatomy:birnlex_1719]
synonym: "pons of varolius spinothalamic tract" EXACT [OBOL:automatic]
synonym: "pons of varolius spinothalamic tract of medulla" EXACT [OBOL:automatic]
synonym: "pons spinothalamic tract" EXACT [OBOL:automatic]
synonym: "pons spinothalamic tract of medulla" EXACT [OBOL:automatic]
synonym: "spinothalamic tract of medulla of pons" EXACT [OBOL:automatic]
synonym: "spinothalamic tract of medulla of pons of varolius" EXACT [OBOL:automatic]
synonym: "spinothalamic tract of pons of varolius" EXACT [OBOL:automatic]
xref: FMA:72504
xref: NIF_GrossAnatomy:birnlex_1719
xref: SCTID:369026006
is_a: UBERON:0007702 {source="FMA"} ! tract of brain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum
relationship: part_of UBERON:0007703 ! spinothalamic tract
[Term]
id: UBERON:0002799
name: fronto-orbital sulcus
synonym: "fronto-orbital dimple" EXACT [FMA:83768]
synonym: "orbito-frontal sulcus" EXACT [FMA:83768]
synonym: "orbitofrontal sulcus" EXACT [BM:Tel-Cx-OFS]
xref: BM:Tel-Cx-OFS
xref: FMA:83768
xref: NIF_GrossAnatomy:birnlex_1724
is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus
relationship: part_of UBERON:0004167 ! orbitofrontal cortex
[Term]
id: UBERON:0002800
name: spinal trigeminal tract of pons
xref: FMA:72507
xref: NIF_GrossAnatomy:birnlex_1725
xref: SCTID:369027002
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002801
name: stratum zonale of thalamus
synonym: "neuraxis stratum" EXACT [FMA:83905]
synonym: "stratum zonale thalami" EXACT [NIF_GrossAnatomy:birnlex_1727]
xref: FMA:83905
xref: NIF_GrossAnatomy:birnlex_1727
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002802
name: left parietal lobe
xref: FMA:72974
xref: NIF_GrossAnatomy:birnlex_1728
xref: SCTID:314147009
property_value: "spatially_disjoint_from" UBERON:0002803
is_a: UBERON:0001872 ! parietal lobe
relationship: part_of UBERON:0002812
intersection_of: UBERON:0001872 ! parietal lobe
intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
relationship: part_of UBERON:0002812 ! left cerebral hemisphere
[Term]
id: UBERON:0002803
name: right parietal lobe
xref: FMA:72973
xref: NIF_GrossAnatomy:birnlex_1729
xref: SCTID:314146000
is_a: UBERON:0001872 ! parietal lobe
relationship: part_of UBERON:0002813
intersection_of: UBERON:0001872 ! parietal lobe
intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
relationship: part_of UBERON:0002813 ! right cerebral hemisphere
[Term]
id: UBERON:0002804
name: left limbic lobe
xref: FMA:72981
xref: NIF_GrossAnatomy:birnlex_1780
is_a: UBERON:0002600 ! limbic lobe
relationship: part_of UBERON:0002812
intersection_of: UBERON:0002600 ! limbic lobe
intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere
relationship: part_of UBERON:0002812 ! left cerebral hemisphere
[Term]
id: UBERON:0002805
name: right limbic lobe
xref: FMA:72980
xref: NIF_GrossAnatomy:birnlex_1781
is_a: UBERON:0002600 ! limbic lobe
relationship: part_of UBERON:0002813
intersection_of: UBERON:0002600 ! limbic lobe
intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere
relationship: part_of UBERON:0002813 ! right cerebral hemisphere
[Term]
id: UBERON:0002806
name: left occipital lobe
xref: FMA:72976
xref: NIF_GrossAnatomy:birnlex_1782
xref: SCTID:314150007
property_value: "spatially_disjoint_from" UBERON:0002807
is_a: UBERON:0002021 ! occipital lobe
relationship: part_of UBERON:0002812
intersection_of: UBERON:0002021 ! occipital lobe
intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
relationship: part_of UBERON:0002812 ! left cerebral hemisphere
[Term]
id: UBERON:0002807
name: right occipital lobe
xref: FMA:72975
xref: NIF_GrossAnatomy:birnlex_1783
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rv9OFy5wpEbGdrcN5Y29ycA
xref: SCTID:314149007
is_a: UBERON:0002021 ! occipital lobe
relationship: part_of UBERON:0002813
intersection_of: UBERON:0002021 ! occipital lobe
intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
relationship: part_of UBERON:0002813 ! right cerebral hemisphere
[Term]
id: UBERON:0002808
name: left temporal lobe
xref: FMA:72972
xref: NIF_GrossAnatomy:birnlex_1784
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rwQLi-ZwpEbGdrcN5Y29ycA
xref: SCTID:314158000
is_a: UBERON:0001871 ! temporal lobe
relationship: part_of UBERON:0002812
intersection_of: UBERON:0001871 ! temporal lobe
intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere
relationship: part_of UBERON:0002812 ! left cerebral hemisphere
[Term]
id: UBERON:0002809
name: right temporal lobe
xref: FMA:72971
xref: NIF_GrossAnatomy:birnlex_1785
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rwQLi-ZwpEbGdrcN5Y29ycA
xref: SCTID:314157005
is_a: UBERON:0001871 ! temporal lobe
relationship: part_of UBERON:0002813
intersection_of: UBERON:0001871 ! temporal lobe
intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere
relationship: part_of UBERON:0002813 ! right cerebral hemisphere
[Term]
id: UBERON:0002810
name: right frontal lobe
xref: FMA:72969
xref: NIF_GrossAnatomy:birnlex_1786
xref: SCTID:314141005
is_a: UBERON:0001870 ! frontal cortex
relationship: part_of UBERON:0002813
intersection_of: UBERON:0001870 ! frontal cortex
intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
relationship: part_of UBERON:0002813 ! right cerebral hemisphere
[Term]
id: UBERON:0002811
name: left frontal lobe
xref: FMA:72970
xref: NIF_GrossAnatomy:birnlex_1787
xref: SCTID:314142003
property_value: "spatially_disjoint_from" UBERON:0002810
is_a: UBERON:0001870 ! frontal cortex
relationship: part_of UBERON:0002812
intersection_of: UBERON:0001870 ! frontal cortex
intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
relationship: part_of UBERON:0002812 ! left cerebral hemisphere
[Term]
id: UBERON:0002812
name: left cerebral hemisphere
synonym: "left hemisphere" EXACT [NIF_GrossAnatomy:birnlex_1795]
xref: FMA:61819
xref: ncithesaurus:Left_Cerebral_Hemisphere
xref: NIF_GrossAnatomy:birnlex_1795
xref: SCTID:362323007
is_a: UBERON:0001869 ! cerebral hemisphere
relationship: in_left_side_of UBERON:0000955
intersection_of: UBERON:0001869 ! cerebral hemisphere
intersection_of: in_left_side_of UBERON:0000955 ! brain
relationship: in_left_side_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002813
name: right cerebral hemisphere
synonym: "right hemisphere" EXACT [NIF_GrossAnatomy:birnlex_1797]
xref: FMA:67292
xref: ncithesaurus:Right_Cerebral_Hemisphere
xref: NIF_GrossAnatomy:birnlex_1797
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvigx5ZwpEbGdrcN5Y29ycA
xref: SCTID:362322002
is_a: UBERON:0001869 ! cerebral hemisphere
relationship: in_right_side_of UBERON:0000955
intersection_of: UBERON:0001869 ! cerebral hemisphere
intersection_of: in_right_side_of UBERON:0000955 ! brain
relationship: in_right_side_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002814
name: posterior superior fissure
synonym: "fissura post clivalis" EXACT [FMA:83733, FMA:TA]
synonym: "post-clival fissure" EXACT [FMA:83733]
synonym: "postclival fissure" EXACT [FMA:83733]
synonym: "posterior superior fissure of cerebellum" EXACT [FMA:83733]
synonym: "postlunate fissure" EXACT [FMA:83733]
xref: FMA:83733
xref: NIF_GrossAnatomy:birnlex_20081254
xref: NIF_GrossAnatomy:nlx_anat_20081254
xref: SCTID:314170001
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002815
name: horizontal fissure
def: "The largest and deepest fissure in the cerebellum is named the horizontal sulcus (or horizontal fissure). It commences in front of the pons, and passes horizontally around the free margin of the hemisphere to the middle line behind, and divides the cerebellum into an upper and a lower portion. [WP,unvetted]." [Wikipedia:Horizontal_fissure_of_cerebellum]
synonym: "fissura horizontalis" RELATED LATIN [Wikipedia:Horizontal_fissure_of_cerebellum]
synonym: "fissura intercruralis cerebelli" EXACT [FMA:75135, FMA:TA]
synonym: "great horizontal fissure" EXACT [FMA:75135]
synonym: "horizontal fissure of cerebellum" EXACT []
synonym: "horizontal fissure of right lung(line)" EXACT [FMA:14697]
synonym: "horizontal sulcus" EXACT []
synonym: "intercrural fissure of cerebellum" EXACT [FMA:75135]
xref: FMA:14697
xref: FMA:75135
xref: http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray702.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Gray702.png/200px-Gray702.png
xref: NIF_GrossAnatomy:birnlex_20081255
xref: NIF_GrossAnatomy:nlx_anat_20081255
xref: SCTID:314173004
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002816
name: prepyramidal fissure
synonym: "fissura prebiventralis cerebelli" EXACT [FMA:75138, FMA:TA]
synonym: "prebiventral fissure of cerebellum" EXACT [FMA:75138]
synonym: "prepyramidal fissure of cerebellum" EXACT [FMA:75138]
synonym: "prepyramidal sulcus" EXACT [FMA:75138]
xref: FMA:75138
xref: NIF_GrossAnatomy:birnlex_20081257
xref: NIF_GrossAnatomy:nlx_anat_20081257
xref: SCTID:314171002
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002817
name: secondary fissure
synonym: "fissura postpyramidalis cerebelli" EXACT [FMA:84043, FMA:TA]
synonym: "post-pyramidal fissure of cerebellum" EXACT [FMA:84043]
synonym: "postpyramidal fissure" EXACT [FMA:84043]
synonym: "secondary fissure" EXACT [FMA:84043]
synonym: "secondary fissure of cerebellum" EXACT [FMA:84043]
xref: FMA:84043
xref: NIF_GrossAnatomy:birnlex_20081258
xref: NIF_GrossAnatomy:nlx_anat_20081258
xref: SCTID:314169002
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002818
name: posterolateral fissure
synonym: "dorsolateral fissure of cerebellum" EXACT [FMA:83730]
synonym: "posterolateral fissure of cerebellum" EXACT [FMA:83730]
synonym: "prenodular fissure" EXACT [FMA:83730]
synonym: "prenodular sulcus" EXACT [FMA:83730]
synonym: "uvulonodular fissure" EXACT [FMA:83730]
xref: FMA:83730
xref: NIF_GrossAnatomy:birnlex_20081259
xref: NIF_GrossAnatomy:nlx_anat_20081259
xref: SCTID:314172009
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002819
name: apex of cochlea
def: "The cupula is a structure in the vestibular system, sensing proprioception. The cupula is located within the ampullae of each of the three semicircular canals. As fluid rushes by the cupula, hair cells within it sense rotational acceleration, and transmit the corresponding signal to the brain through the vestibulocochlear nerve (CN VIII) In their natural orientation within the head, the cupulae are located on the medial aspect of the semicircular canals. In this orientation, the kinocilia rest on the posterior aspect of the cupula. [WP,unvetted]." [Wikipedia:Apex_of_cochlea]
subset: uberon_slim
synonym: "cochlea apex" EXACT [FMA:75641]
synonym: "cupula of cochlea" EXACT [FMA:75641]
xref: FMA:75641
xref: NIF_GrossAnatomy:birnlex_2523
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002820
name: zona arcuata of basilar membrane of cochlea
alt_id: UBERON:0002821
xref: FMA:75709
xref: NIF_GrossAnatomy:birnlex_2528
is_a: UBERON:0005764 ! acellular membrane
[Term]
id: UBERON:0002822
name: macula lutea proper
xref: FMA:58671
xref: NIF_GrossAnatomy:birnlex_2542
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000053 ! macula lutea
[Term]
id: UBERON:0002823
name: clivus of fovea centralis
comment: NIF differs from FMA
synonym: "clivus of macula lutea" EXACT [NIF_GrossAnatomy:birnlex_2544]
synonym: "fovea centralis clivus" EXACT [FMA:58674]
xref: FMA:58674
xref: NIF_GrossAnatomy:birnlex_2544
is_a: UBERON:0000466 ! immaterial anatomical entity
relationship: part_of UBERON:0001786 ! fovea centralis
[Term]
id: UBERON:0002824
name: vestibular ganglion
def: "The vestibular nerve ganglion (also called Scarpa's ganglion) is the ganglion of the vestibular nerve. It contains the cell bodies of the bipolar primary afferent neurons whose peripheral processes form synaptic contact with hair cells of the vestibular sensory end organs[WP,unvetted]." [Wikipedia:Scarpa%27s_ganglion]
subset: uberon_slim
synonym: "Scarpa's ganglion" EXACT [FMA:53435]
synonym: "vestibulocochlear component" EXACT []
synonym: "vestibulocochlear VIII ganglion vestibular component" EXACT [MA:0001086]
xref: EMAPA:17573
xref: FMA:53435
xref: MA:0001086
xref: ncithesaurus:Vestibular_Ganglion
xref: NIF_GrossAnatomy:birnlex_2549
xref: RETIRED_EHDAA2:0002199
xref: SCTID:244450009
xref: VHOG:0000682
is_a: UBERON:0001714 {source="FMA"} ! cranial ganglion
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002827 {source="MA"} ! auditory ganglion
[Term]
id: UBERON:0002825
name: superior part of vestibular ganglion
synonym: "pars superior vestibularis" RELATED [MA:0002778]
synonym: "vestibular ganglion superior part" EXACT [MA:0002778]
xref: FMA:77531
xref: MA:0002778
xref: NIF_GrossAnatomy:birnlex_2551
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002824 ! vestibular ganglion
[Term]
id: UBERON:0002826
name: inferior part of vestibular ganglion
synonym: "vestibular ganglion inferior part" EXACT [MA:0002779]
xref: FMA:77532
xref: MA:0002779
xref: NIF_GrossAnatomy:birnlex_2552
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002824 ! vestibular ganglion
[Term]
id: UBERON:0002827
name: auditory ganglion
comment: Editor notes: Consider follow MA naming scheme. // The cell bodies of the cochlear nerve lie within the central aspect of the cochlea and are collectively known as the spiral ganglion. This name reflects the fact that the cell bodies, considered as a unit, have a spiral (or perhaps more accurately, a helical) shape, reflecting the shape of the cochlea. The terms "cochlear nerve fiber" and "spiral ganglion cell" are used, to some degree, interchangeably, although the former may be used to more specifically refer to the central axons of the cochlear nerve. These central axons exit the cochlea at its base, where it forms a nerve trunk. In humans, this aspect of the nerve is roughly one inch in length. It projects centrally to the brainstem, where its fibers synapse with the cell bodies of the cochlear nucleus[Wikipedia:Cochlear_nerve]
subset: vertebrate_core
synonym: "auditory ganglion" EXACT [ZFA:0000588]
synonym: "gVIII" EXACT [ZFA:0000588]
synonym: "sag" EXACT [ZFA:0000588]
synonym: "statoacoustic (VIII) ganglion" EXACT [ZFA:0000588]
synonym: "statoacoustic ganglia" EXACT [ZFA:0000588]
synonym: "vestibulocochlear VIII ganglion" EXACT [MA:0001084]
xref: EFO:0003543
xref: EHDAA2:0002196
xref: EHDAA:5569
xref: EHDAA:6653
xref: EMAPA:17571
xref: MA:0001084
xref: NIF_GrossAnatomy:birnlex_2564
xref: TAO:0000588
xref: VHOG:0000696
xref: XAO:0004142
xref: ZFA:0000588
property_value: UBPROP:0000001 "The sensory ganglion of the ear. (See Anatomical Atlas entry for statoacoustic ganglion by T. Whitfield.)[TAO]" xsd:string
is_a: UBERON:0001714 {source="ZFA"} ! cranial ganglion
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0003249 {source="NBK53175"} ! epithelium of otic placode
relationship: develops_from UBERON:0005565 {source="ZFA"} ! facio-acoustic neural crest
relationship: part_of UBERON:0002105 {source="ZFA"} ! vestibulo-auditory system
[Term]
id: UBERON:0002828
name: ventral cochlear nucleus
def: "The ventral cochlear nucleus (or anterior, or accessory), placed between the two divisions of the cochlear nerve, is on the ventral aspect of the inferior peduncle. Composed of several regions of distinct cell types, this nucleus serves primarily as a relay station for ascending auditory information. Bushy cells in the anterior ventral cochlear nucleus (AVCN), which receive end bulbs of held from auditory nerve fibers, project to the superior olivary complex through the trapezoid body and intermediate acoustic stria. Other cell types project to the lateral lemniscus and the inferior colliculus directly. [WP,unvetted]." [Wikipedia:Ventral_cochlear_nucleus]
subset: uberon_slim
synonym: "anterior cochlear nucleus" EXACT [FMA:54621]
synonym: "c1281209" EXACT [NIF_GrossAnatomy:birnlex_2567]
synonym: "ventral cochlear nucleus" EXACT [FMA:54621]
xref: ABA:VCO
xref: BM:CV
xref: FMA:54621
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png
xref: NIF_GrossAnatomy:birnlex_2567
xref: SCTID:280178008
is_a: UBERON:0001720 ! cochlear nucleus
[Term]
id: UBERON:0002829
name: dorsal cochlear nucleus
def: "The dorsal cochlear nucleus (DCN, also known as the 'tuberculum acousticum'), is a cortex-like structure on the dorso-lateral surface of the brainstem. Along with the ventral cochlear nucleus, it forms the cochlear nucleus, where all auditory nerve fibers from the cochlea form their first synapses. [WP,unvetted]." [Wikipedia:Dorsal_cochlear_nucleus]
subset: uberon_slim
synonym: "dorsal cochlear nucleus" EXACT [FMA:54624]
synonym: "dorsal division of cochlear nucleus" EXACT [FMA:54624]
synonym: "nucleus cochlearis posterior" RELATED LATIN [Wikipedia:Dorsal_cochlear_nucleus]
synonym: "posterior cochlear nucleus" EXACT [FMA:54624]
xref: ABA:DCO
xref: BM:Me-CD
xref: FMA:54624
xref: http://upload.wikimedia.org/wikipedia/commons/b/bb/Gray760.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png
xref: ncithesaurus:Dorsal_Cochlear_Nucleus
xref: NIF_GrossAnatomy:birnlex_2569
xref: SCTID:280179000
is_a: UBERON:0001720 ! cochlear nucleus
[Term]
id: UBERON:0002830
name: anteroventral cochlear nucleus
synonym: "anterior part of anterior cochlear nucleus" EXACT [NIF_GrossAnatomy:birnlex_2572]
synonym: "anteroventral auditory nucleus" EXACT [FMA:72571]
synonym: "nucleus magnocellularis" EXACT [NIF_GrossAnatomy:birnlex_2572]
xref: FMA:72571
xref: NIF_GrossAnatomy:birnlex_2572
is_a: UBERON:0001720 ! cochlear nucleus
[Term]
id: UBERON:0002831
name: posteroventral cochlear nucleus
synonym: "posterior part of anterior cochlear nucleus" EXACT [NIF_GrossAnatomy:birnlex_2573]
xref: FMA:72572
xref: NIF_GrossAnatomy:birnlex_2573
is_a: UBERON:0001720 ! cochlear nucleus
[Term]
id: UBERON:0002832
name: ventral nucleus of trapezoid body
synonym: "anterior nucleus of trapezoid body" EXACT [FMA:72477]
synonym: "nucleus anterior corporis trapezoidei" EXACT [FMA:72477, FMA:TA]
xref: FMA:72477
xref: NIF_GrossAnatomy:birnlex_2576
xref: SCTID:369020000
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007247 ! superior olivary nucleus
is_a: UBERON:0007633 ! nucleus of trapezoid body
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0002833
name: medial nucleus of trapezoid body
xref: FMA:75732
xref: NIF_GrossAnatomy:birnlex_2595
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007633 ! nucleus of trapezoid body
[Term]
id: UBERON:0002834
name: cervical dorsal root ganglion
synonym: "cervical dorsal root ganglion" EXACT [FMA:6005]
synonym: "cervical spinal ganglion" EXACT [FMA:6005]
xref: FMA:6005
xref: NIF_GrossAnatomy:birnlex_2599
xref: SCTID:278325008
is_a: UBERON:0000044 ! dorsal root ganglion
[Term]
id: UBERON:0002835
name: thoracic dorsal root ganglion
def: "A dorsal root ganglion that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "dorsal root ganglion of thorax" EXACT [OBOL:automatic]
synonym: "ganglion of dorsal root of thorax" EXACT [OBOL:automatic]
synonym: "ganglion spinalis of thorax" EXACT [OBOL:automatic]
synonym: "thoracic dorsal root ganglion" EXACT [FMA:6006]
synonym: "thoracic spinal ganglion" EXACT [FMA:6006]
synonym: "thorax dorsal root ganglion" EXACT [OBOL:automatic]
synonym: "thorax ganglion of dorsal root" EXACT [OBOL:automatic]
synonym: "thorax ganglion spinalis" EXACT [OBOL:automatic]
xref: FMA:6006
xref: NIF_GrossAnatomy:birnlex_2600
xref: SCTID:278326009
is_a: UBERON:0000044 ! dorsal root ganglion
is_a: UBERON:0000961 ! thoracic ganglion
relationship: part_of UBERON:0000915
intersection_of: UBERON:0000044 ! dorsal root ganglion
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0002836
name: lumbar dorsal root ganglion
def: "the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the lumbar vertebrae." [MP:0006404]
synonym: "lumbar dorsal root ganglion" EXACT [FMA:6007]
synonym: "lumbar spinal ganglion" EXACT [FMA:6007]
xref: FMA:6007
xref: NIF_GrossAnatomy:birnlex_2601
xref: SCTID:278327000
is_a: UBERON:0000044 ! dorsal root ganglion
[Term]
id: UBERON:0002837
name: sacral dorsal root ganglion
synonym: "sacral dorsal root ganglion" EXACT [FMA:6008]
synonym: "sacral spinal ganglion" EXACT [FMA:6008]
xref: FMA:6008
xref: NIF_GrossAnatomy:birnlex_2602
xref: SCTID:278328005
is_a: UBERON:0000044 ! dorsal root ganglion
[Term]
id: UBERON:0002838
name: first cervical dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "first cervical dorsal root ganglion" EXACT [FMA:6010]
synonym: "first cervical spinal ganglion" EXACT [FMA:6010]
xref: EMAPA:25144
xref: FMA:6010
xref: NIF_GrossAnatomy:birnlex_2603
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002839
name: second cervical dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "second cervical dorsal root ganglion" EXACT [FMA:6315]
synonym: "second cervical spinal ganglion" EXACT [FMA:6315]
xref: EMAPA:25155
xref: FMA:6315
xref: NIF_GrossAnatomy:birnlex_2604
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002840
name: third cervical dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "third cervical dorsal root ganglion" EXACT [FMA:6316]
synonym: "third cervical spinal ganglion" EXACT [FMA:6316]
xref: EMAPA:25156
xref: FMA:6316
xref: NIF_GrossAnatomy:birnlex_2605
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002841
name: fourth cervical dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "fourth cervical dorsal root ganglion" EXACT [FMA:6317]
synonym: "fourth cervical spinal ganglion" EXACT [FMA:6317]
xref: EMAPA:25157
xref: FMA:6317
xref: NIF_GrossAnatomy:birnlex_2606
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002842
name: fifth cervical dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "fifth cervical dorsal root ganglion" EXACT [FMA:6318]
synonym: "fifth cervical spinal ganglion" EXACT [FMA:6318]
xref: EMAPA:25158
xref: FMA:6318
xref: NIF_GrossAnatomy:birnlex_2607
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002843
name: seventh cervical dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "seventh cervical dorsal root ganglion" EXACT [FMA:6360]
synonym: "seventh cervical spinal ganglion" EXACT [FMA:6360]
xref: EMAPA:25160
xref: FMA:6360
xref: NIF_GrossAnatomy:birnlex_2609
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002844
name: eighth cervical dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "eighth cervical dorsal root ganglion" EXACT [FMA:6361]
synonym: "eighth cervical spinal ganglion" EXACT [FMA:6361]
xref: FMA:6361
xref: NIF_GrossAnatomy:birnlex_2610
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002845
name: first thoracic dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "first thoracic dorsal root ganglion" EXACT [FMA:6321]
synonym: "first thoracic spinal ganglion" EXACT [FMA:6321]
xref: EMAPA:25174
xref: FMA:6321
xref: NIF_GrossAnatomy:birnlex_2611
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002846
name: second thoracic dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "second thoracic dorsal root ganglion" EXACT [FMA:6322]
synonym: "second thoracic spinal ganglion" EXACT [FMA:6322]
xref: EMAPA:25175
xref: FMA:6322
xref: NIF_GrossAnatomy:birnlex_2612
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002847
name: third thoracic dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "third thoracic dorsal root ganglion" EXACT [FMA:6323]
synonym: "third thoracic spinal ganglion" EXACT [FMA:6323]
xref: EMAPA:25176
xref: FMA:6323
xref: NIF_GrossAnatomy:birnlex_2613
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002848
name: fifth thoracic dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "fifth thoracic dorsal root ganglion" EXACT [FMA:6325]
synonym: "fifth thoracic spinal ganglion" EXACT [FMA:6325]
xref: EMAPA:25179
xref: FMA:6325
xref: NIF_GrossAnatomy:birnlex_2615
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002849
name: sixth thoracic dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "sixth thoracic dorsal root ganglion" EXACT [FMA:6326]
synonym: "sixth thoracic spinal ganglion" EXACT [FMA:6326]
xref: EMAPA:25178
xref: FMA:6326
xref: NIF_GrossAnatomy:birnlex_2616
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002850
name: seventh thoracic dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "seventh thoracic dorsal root ganglion" EXACT [FMA:6327]
synonym: "seventh thoracic spinal ganglion" EXACT [FMA:6327]
xref: EMAPA:25180
xref: FMA:6327
xref: NIF_GrossAnatomy:birnlex_2617
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002851
name: eighth thoracic dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "eighth thoracic dorsal root ganglion" EXACT [FMA:6328]
synonym: "eighth thoracic spinal ganglion" EXACT [FMA:6328]
xref: EMAPA:25181
xref: FMA:6328
xref: NIF_GrossAnatomy:birnlex_2618
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002852
name: ninth thoracic dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "ninth thoracic dorsal root ganglion" EXACT [FMA:6329]
synonym: "ninth thoracic spinal ganglion" EXACT [FMA:6329]
xref: EMAPA:25182
xref: FMA:6329
xref: NIF_GrossAnatomy:birnlex_2619
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002853
name: tenth thoracic dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "tenth thoracic dorsal root ganglion" EXACT [FMA:6330]
synonym: "tenth thoracic spinal ganglion" EXACT [FMA:6330]
xref: EMAPA:25183
xref: FMA:6330
xref: NIF_GrossAnatomy:birnlex_2620
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002854
name: eleventh thoracic dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "eleventh thoracic dorsal root ganglion" EXACT [FMA:6331]
synonym: "eleventh thoracic spinal ganglion" EXACT [FMA:6331]
xref: EMAPA:25184
xref: FMA:6331
xref: NIF_GrossAnatomy:birnlex_2621
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002855
name: twelfth thoracic dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "twelfth thoracic dorsal root ganglion" EXACT [FMA:6332]
synonym: "twelfth thoracic spinal ganglion" EXACT [FMA:6332]
xref: EMAPA:25185
xref: FMA:6332
xref: NIF_GrossAnatomy:birnlex_2622
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002856
name: second lumbar dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "second lumbar dorsal root ganglion" EXACT [FMA:6336]
synonym: "second lumbar spinal ganglion" EXACT [FMA:6336]
xref: EMAPA:25165
xref: FMA:6336
xref: NIF_GrossAnatomy:birnlex_2623
is_a: UBERON:0002836 ! lumbar dorsal root ganglion
[Term]
id: UBERON:0002857
name: first lumbar dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "first lumbar dorsal root ganglion" EXACT [FMA:6335]
synonym: "first lumbar spinal ganglion" EXACT [FMA:6335]
xref: EMAPA:25164
xref: FMA:6335
xref: NIF_GrossAnatomy:birnlex_2624
is_a: UBERON:0002836 ! lumbar dorsal root ganglion
[Term]
id: UBERON:0002858
name: third lumbar dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "third lumbar dorsal root ganglion" EXACT [FMA:6337]
synonym: "third lumbar spinal ganglion" EXACT [FMA:6337]
xref: EMAPA:25166
xref: FMA:6337
xref: NIF_GrossAnatomy:birnlex_2625
is_a: UBERON:0002836 ! lumbar dorsal root ganglion
[Term]
id: UBERON:0002859
name: fifth lumbar dorsal root ganglion
alt_id: UBERON:0003944
def: "the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fifth lumbar vertebra" [MP:0001022]
subset: defined_by_ordinal_series
synonym: "fifth lumbar dorsal root ganglion" EXACT [FMA:6339]
synonym: "fifth lumbar spinal ganglion" EXACT [FMA:6339]
synonym: "L5 dorsal root ganglion" EXACT [MP:0001022]
xref: EMAPA:25168
xref: FMA:6339
xref: NIF_GrossAnatomy:birnlex_2627
is_a: UBERON:0002836 ! lumbar dorsal root ganglion
[Term]
id: UBERON:0002860
name: first sacral dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "first sacral dorsal root ganglion" EXACT [FMA:6342]
synonym: "first sacral spinal ganglion" EXACT [FMA:6342]
xref: EMAPA:25170
xref: FMA:6342
xref: NIF_GrossAnatomy:birnlex_2628
is_a: UBERON:0002837 ! sacral dorsal root ganglion
[Term]
id: UBERON:0002861
name: second sacral dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "second sacral dorsal root ganglion" EXACT [FMA:6343]
synonym: "second sacral spinal ganglion" EXACT [FMA:6343]
xref: EMAPA:25171
xref: FMA:6343
xref: NIF_GrossAnatomy:birnlex_2629
is_a: UBERON:0002837 ! sacral dorsal root ganglion
[Term]
id: UBERON:0002862
name: third sacral dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "third sacral dorsal root ganglion" EXACT [FMA:6344]
synonym: "third sacral spinal ganglion" EXACT [FMA:6344]
xref: EMAPA:25172
xref: FMA:6344
xref: NIF_GrossAnatomy:birnlex_2630
is_a: UBERON:0002837 ! sacral dorsal root ganglion
[Term]
id: UBERON:0002863
name: fifth sacral dorsal root ganglion
subset: defined_by_ordinal_series
synonym: "fifth sacral dorsal root ganglion" EXACT [FMA:6346]
synonym: "fifth sacral spinal ganglion" EXACT [FMA:6346]
xref: FMA:6346
xref: NIF_GrossAnatomy:birnlex_2632
is_a: UBERON:0002837 ! sacral dorsal root ganglion
[Term]
id: UBERON:0002864
name: accessory cuneate nucleus
def: "The accessory cuneate nucleus is located lateral to the cuneate nucleus in the medulla oblongata at the level of the sensory decussation. It receives input from cervical spinal nerves and transmits that information to the cerebellum. These fibers are called cuneocerebellar (cuneate nucleus > cerebellum) fibers. In this function, the accessory cuneate nucleus is comparable to the upper extremity portion of the posterior spinocerebellar tract. [WP,unvetted]." [Wikipedia:Accessory_cuneate_nucleus]
subset: uberon_slim
synonym: "external cuneate nucleus" EXACT [FMA:72603]
synonym: "lateral cuneate nucleus" EXACT [FMA:72603]
synonym: "nucleus cuneatus accessorius" RELATED LATIN [Wikipedia:Accessory_cuneate_nucleus]
synonym: "nucleus of corpus restiforme" EXACT [FMA:72603]
xref: ABA:ECU
xref: BM:Me-CX
xref: EV:0100285
xref: FMA:72603
xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png
xref: NIF_GrossAnatomy:birnlex_2634
xref: SCTID:15575006
property_value: "spatially_disjoint_from" UBERON:0002126
property_value: "spatially_disjoint_from" UBERON:0002162
property_value: "spatially_disjoint_from" UBERON:0002591
property_value: "spatially_disjoint_from" UBERON:0002610
property_value: "spatially_disjoint_from" UBERON:0002866
property_value: "spatially_disjoint_from" UBERON:0002873
property_value: "spatially_disjoint_from" UBERON:0007633
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002865
name: arcuate nucleus of medulla
def: "An arcuate nucleus of hypothalamus that is part of a medulla [Obol]." [OBOL:automatic]
synonym: "arcuate hypothalamic nucleus of medulla" EXACT [OBOL:automatic]
synonym: "arcuate nucleus of hypothalamus of medulla" EXACT [OBOL:automatic]
synonym: "arcuate nucleus-1" EXACT [FMA:72609]
synonym: "arcuate nucleus-2 of medulla" EXACT [OBOL:automatic]
synonym: "arcuate periventricular nucleus of medulla" EXACT [OBOL:automatic]
synonym: "infundibular hypothalamic nucleus of medulla" EXACT [OBOL:automatic]
synonym: "infundibular nucleus of medulla" EXACT [OBOL:automatic]
synonym: "infundibular periventricular nucleus of medulla" EXACT [OBOL:automatic]
synonym: "medial arcuate nucleus" EXACT [FMA:72609]
synonym: "medulla arcuate hypothalamic nucleus" EXACT [OBOL:automatic]
synonym: "medulla arcuate nucleus" EXACT [OBOL:automatic]
synonym: "medulla arcuate nucleus of hypothalamus" EXACT [OBOL:automatic]
synonym: "medulla arcuate nucleus-2" EXACT [OBOL:automatic]
synonym: "medulla arcuate periventricular nucleus" EXACT [OBOL:automatic]
synonym: "medulla infundibular hypothalamic nucleus" EXACT [OBOL:automatic]
synonym: "medulla infundibular nucleus" EXACT [OBOL:automatic]
synonym: "medulla infundibular periventricular nucleus" EXACT [OBOL:automatic]
synonym: "nucleus arciformis pyramidalis" EXACT [NIF_GrossAnatomy:birnlex_2635]
xref: FMA:72609
xref: NIF_GrossAnatomy:birnlex_2635
is_a: UBERON:0001932 ! arcuate nucleus of hypothalamus
is_a: UBERON:0003528 ! brain grey matter
relationship: part_of UBERON:0000958
intersection_of: UBERON:0001932 ! arcuate nucleus of hypothalamus
intersection_of: part_of UBERON:0000958 ! medulla
relationship: part_of UBERON:0000958 ! medulla
[Term]
id: UBERON:0002866
name: caudal part of spinal trigeminal nucleus
synonym: "caudal nucleus" EXACT [NIF_GrossAnatomy:birnlex_2637]
synonym: "caudal nucleus (kandell)" EXACT []
synonym: "spinal trigeminal nucleus, caudal part" EXACT [FMA:72606]
xref: ABA:SPVC
xref: EV:0100235
xref: FMA:72606
xref: MESH:A.08.186.211.132.931.920.927
xref: NIF_GrossAnatomy:birnlex_2637
property_value: "spatially_disjoint_from" UBERON:0002126
property_value: "spatially_disjoint_from" UBERON:0002162
property_value: "spatially_disjoint_from" UBERON:0002591
property_value: "spatially_disjoint_from" UBERON:0002610
property_value: "spatially_disjoint_from" UBERON:0002864
property_value: "spatially_disjoint_from" UBERON:0002873
property_value: "spatially_disjoint_from" UBERON:0007633
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve
[Term]
id: UBERON:0002867
name: central gray substance of medulla
synonym: "central gray matter" EXACT [NIF_GrossAnatomy:birnlex_2638]
synonym: "medullary central gray substance" EXACT [FMA:72595]
xref: FMA:72595
xref: NIF_GrossAnatomy:birnlex_2638
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002868
name: commissural nucleus of vagus nerve
synonym: "commissural nucleus-1" EXACT [FMA:54597]
synonym: "nucleus of inferior commissure" EXACT [FMA:54597]
synonym: "nucleus of inferior commisure" EXACT [NIF_GrossAnatomy:birnlex_2639]
xref: FMA:54597
xref: NIF_GrossAnatomy:birnlex_2639
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002869
name: diffuse reticular nucleus
synonym: "kolloker-fuse nucleus" EXACT [NIF_GrossAnatomy:birnlex_2641]
synonym: "nucleus of kolliker-fuse" EXACT []
xref: FMA:72598
xref: NIF_GrossAnatomy:birnlex_2641
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002870
name: dorsal motor nucleus of vagus nerve
def: "The dorsal nucleus of the vagus nerve (or posterior motor nucleus of vagus) is a cranial nerve nucleus for the vagus nerve that arises from the floor of the fourth ventricle. It mostly serves parasympathetic vagal functions in the heart, gastrointestinal tract, lungs, and other thoracic and abdominal vagal innervations. [WP,unvetted]." [Wikipedia:Dorsal_motor_nucleus_of_vagus_nerve]
subset: uberon_slim
synonym: "dorsal efferent nucleus of vagus" EXACT [FMA:54592]
synonym: "dorsal motor nucleus of the vagus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve]
synonym: "dorsal motor nucleus of the vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve]
synonym: "dorsal motor nucleus of vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve]
synonym: "dorsal motor nucleus of vagus X nerve" EXACT [MA:0001036]
synonym: "dorsal motor vagal nucleus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve]
synonym: "dorsal nucleus of the vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve]
synonym: "dorsal vagal nucleus" EXACT [NIF_GrossAnatomy:birnlex_2642]
synonym: "dorsal vagal nucleus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve]
synonym: "nucleus alaris" EXACT [NIF_GrossAnatomy:birnlex_2642]
synonym: "posterior nucleus of vagus nerve" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve]
synonym: "vagus nucleus" RELATED [Wikipedia:Dorsal_nucleus_of_vagus_nerve]
xref: ABA:DMX
xref: BM:DX
xref: EHDAA2:0004649
xref: EV:0100287
xref: FMA:54592
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Gray697.png/200px-Gray697.png
xref: MA:0001036
xref: ncithesaurus:Dorsal_Nucleus_of_the_Vagus_Nerve
xref: NIF_GrossAnatomy:birnlex_2642
xref: SCTID:52884007
property_value: "spatially_disjoint_from" UBERON:0001719
property_value: "spatially_disjoint_from" UBERON:0002127
property_value: "spatially_disjoint_from" UBERON:0002154
property_value: "spatially_disjoint_from" UBERON:0002155
property_value: "spatially_disjoint_from" UBERON:0002559
property_value: "spatially_disjoint_from" UBERON:0002673
property_value: "spatially_disjoint_from" UBERON:0002871
property_value: "spatially_disjoint_from" UBERON:0002872
property_value: "spatially_disjoint_from" UBERON:0002877
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: develops_from UBERON:0010127 {evidence="definitional"} ! future dorsal motor nucleus of vagus
relationship: part_of UBERON:0001896 {source="NIF", source="MA"} ! medulla oblongata
[Term]
id: UBERON:0002871
name: hypoglossal nucleus
def: "The hypoglossal nucleus is a cranial nerve nucleus, and it extends the length of the medulla, and being a motor nucleus, is close to the midline. In the open medulla, it is visible as what is known as the hypoglossal trigone, a raised area (medial to the vagal trigone) protruding slightly into the fourth ventricle. In the closed medulla, the gracile and cuneate nuclei lie posteriorly, which means the nucleus is not as close to the back of the medulla as in the open medulla. It is, however, still close to the midline. [WP,unvetted]." [Wikipedia:Hypoglossal_nucleus]
subset: uberon_slim
synonym: "hypoglossal nerve nucleus" EXACT [FMA:54505]
synonym: "hypoglossal nucleus" EXACT [FMA:54505]
synonym: "hypoglossal XII nucleus" EXACT [MA:0001039]
synonym: "nucleus nervi hypoglossi" EXACT [FMA:54505, FMA:TA]
synonym: "nucleus nervi hypoglossi" RELATED LATIN [Wikipedia:Hypoglossal_nucleus]
synonym: "nucleus of hypoglossal nerve" EXACT [FMA:54505]
synonym: "twelfth cranial nerve nucleus" EXACT [FMA:54505]
xref: ABA:XII
xref: BM:XII
xref: EHDAA2:0004635
xref: EV:0100286
xref: FMA:54505
xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png
xref: MA:0001039
xref: ncithesaurus:Hypoglossal_Nucleus
xref: ncithesaurus:Nucleus_of_the_Hypoglossal_Nerve
xref: NIF_GrossAnatomy:birnlex_2644
xref: SCTID:47361005
xref: VHOG:0001358
property_value: "spatially_disjoint_from" UBERON:0001719
property_value: "spatially_disjoint_from" UBERON:0002127
property_value: "spatially_disjoint_from" UBERON:0002154
property_value: "spatially_disjoint_from" UBERON:0002155
property_value: "spatially_disjoint_from" UBERON:0002559
property_value: "spatially_disjoint_from" UBERON:0002673
property_value: "spatially_disjoint_from" UBERON:0002870
property_value: "spatially_disjoint_from" UBERON:0002872
property_value: "spatially_disjoint_from" UBERON:0002877
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002872
name: inferior salivatory nucleus
def: "In the brain, the inferior salivatory nucleus is a cluster of neurons controlling the parasympathetic input to the parotid gland. It is one of the components of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_salivatory_nucleus]
subset: uberon_slim
synonym: "inferior salivary nucleus" EXACT [GO:0021752]
synonym: "inferior salivatary nucleus" EXACT []
synonym: "nucleus salivatorius inferior" RELATED LATIN [Wikipedia:Inferior_salivatory_nucleus]
xref: ABA:ISN
xref: EHDAA2:0004641
xref: FMA:72601
xref: http://upload.wikimedia.org/wikipedia/commons/a/a0/Gray843.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a0/Gray843.png/200px-Gray843.png
xref: NIF_GrossAnatomy:birnlex_2645
property_value: "spatially_disjoint_from" UBERON:0001719
property_value: "spatially_disjoint_from" UBERON:0002127
property_value: "spatially_disjoint_from" UBERON:0002154
property_value: "spatially_disjoint_from" UBERON:0002155
property_value: "spatially_disjoint_from" UBERON:0002559
property_value: "spatially_disjoint_from" UBERON:0002673
property_value: "spatially_disjoint_from" UBERON:0002870
property_value: "spatially_disjoint_from" UBERON:0002871
property_value: "spatially_disjoint_from" UBERON:0002877
is_a: UBERON:0004133 ! salivatory nucleus
relationship: continuous_with UBERON:0001649 ! glossopharyngeal nerve
relationship: develops_from UBERON:0010124 {evidence="definitional"} ! future inferior salivatory nucleus
[Term]
id: UBERON:0002873
name: interpolar part of spinal trigeminal nucleus
xref: ABA:SPVI
xref: FMA:235324
xref: NIF_GrossAnatomy:birnlex_2646
property_value: "spatially_disjoint_from" UBERON:0002126
property_value: "spatially_disjoint_from" UBERON:0002162
property_value: "spatially_disjoint_from" UBERON:0002591
property_value: "spatially_disjoint_from" UBERON:0002610
property_value: "spatially_disjoint_from" UBERON:0002864
property_value: "spatially_disjoint_from" UBERON:0002866
property_value: "spatially_disjoint_from" UBERON:0007633
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve
[Term]
id: UBERON:0002874
name: lateral pericuneate nucleus
xref: FMA:72604
xref: NIF_GrossAnatomy:birnlex_2647
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002875
name: medial pericuneate nucleus
xref: FMA:72605
xref: NIF_GrossAnatomy:birnlex_2648
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002876
name: nucleus intercalatus
alt_id: UBERON:0002878
comment: two NIF classes with the same name
synonym: "intercalated nucleus of medulla" EXACT [FMA:72597]
synonym: "nucleus intercalatus of medulla" EXACT [FMA:72597]
synonym: "nucleus of staderini" EXACT []
synonym: "nucleus staderini" EXACT [NIF_GrossAnatomy:birnlex_2651]
synonym: "nucleus staderini" EXACT [NIF_GrossAnatomy:birnlex_2654]
xref: EV:0100291
xref: FMA:72597
xref: NIF_GrossAnatomy:birnlex_2651
xref: NIF_GrossAnatomy:birnlex_2654
xref: SCTID:369077004
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002877
name: parasolitary nucleus
synonym: "nucleus fasciculus solitarius" EXACT [NIF_GrossAnatomy:birnlex_2653]
synonym: "nucleus juxtasolitarius" EXACT [NIF_GrossAnatomy:birnlex_2653]
xref: ABA:PAS
xref: FMA:77091
xref: NIF_GrossAnatomy:birnlex_2653
property_value: "spatially_disjoint_from" UBERON:0001719
property_value: "spatially_disjoint_from" UBERON:0002127
property_value: "spatially_disjoint_from" UBERON:0002154
property_value: "spatially_disjoint_from" UBERON:0002155
property_value: "spatially_disjoint_from" UBERON:0002559
property_value: "spatially_disjoint_from" UBERON:0002673
property_value: "spatially_disjoint_from" UBERON:0002870
property_value: "spatially_disjoint_from" UBERON:0002871
property_value: "spatially_disjoint_from" UBERON:0002872
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002879
name: peritrigeminal nucleus
xref: FMA:72600
xref: NIF_GrossAnatomy:birnlex_2655
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002880
name: pontobulbar nucleus
synonym: "nucleus of circumolivary bundle" EXACT [FMA:72608]
synonym: "pontobulbar body" EXACT [FMA:72608]
xref: FMA:72608
xref: NIF_GrossAnatomy:birnlex_2656
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002881
name: sublingual nucleus
def: "In the substance of the formatio reticularis are two small nuclei of gray matter. The one near the dorsal aspect of the hilus of the inferior olivary nucleus is called the Sublingual nucleus (inferior central nucleus, nucleus of Roller.) [WP,unvetted]." [Wikipedia:Sublingual_nucleus]
subset: uberon_slim
synonym: "inferior central nucleus" RELATED INCONSISTENT [Wikipedia:Sublingual_nucleus]
synonym: "nucleus of roller" EXACT [FMA:68574]
synonym: "nucleus of roller" RELATED [Wikipedia:Sublingual_nucleus]
synonym: "nucleus sublingualis" RELATED LATIN [Wikipedia:Sublingual_nucleus]
xref: ABA:NR
xref: FMA:68574
xref: NIF_GrossAnatomy:birnlex_2657
property_value: "spatially_disjoint_from" UBERON:0002160
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002882
name: supraspinal nucleus
xref: BM:SSp
xref: EV:0100282
xref: FMA:74507
xref: NIF_GrossAnatomy:birnlex_2658
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002883
name: central amygdaloid nucleus
synonym: "amygdala central nucleus" RELATED [BTO:0002686]
synonym: "central nucleus of amygda" EXACT [NIF_GrossAnatomy:birnlex_2682]
synonym: "central nucleus of amygdala" EXACT [FMA:74047]
synonym: "nucleus amygdalae centralis" RELATED [BTO:0002686]
xref: BM:Tel-Am-ACE
xref: BTO:0002686
xref: EV:0100191
xref: FMA:74047
xref: MA:0002923
xref: NIF_GrossAnatomy:birnlex_2682
is_a: UBERON:0002619 ! regional part of cerebral cortex
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002884
name: intercalated amygdaloid nuclei
synonym: "intercalated amygdaloid nuclei" EXACT [FMA:61868]
synonym: "intercalated amygdaloid nucleus" EXACT [FMA:61868]
synonym: "intercalated masses of nucleus amygdaloideus" EXACT [FMA:61868]
synonym: "intercalated nuclei of amygdala" EXACT [FMA:61868]
synonym: "intercalated nucleus of the amygdala" EXACT [NIF_GrossAnatomy:birnlex_2683]
synonym: "massa intercalata" EXACT [NIF_GrossAnatomy:birnlex_2683]
synonym: "massa intercalata of amygdala" EXACT [NIF_GrossAnatomy:birnlex_2683]
xref: FMA:61868
xref: MA:0002925
xref: NIF_GrossAnatomy:birnlex_2683
is_a: UBERON:0002619 ! regional part of cerebral cortex
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002885
name: accessory basal amygdaloid nucleus
synonym: "accessory basal nucleus of amygdala" EXACT [NIF_GrossAnatomy:birnlex_2686]
synonym: "basal amygdaloid nucleus, medial part" EXACT [NIF_GrossAnatomy:birnlex_2686]
synonym: "basomedial nucleus (de olmos)" EXACT [NIF_GrossAnatomy:birnlex_2686]
xref: FMA:61867
xref: NIF_GrossAnatomy:birnlex_2686
is_a: UBERON:0002619 ! regional part of cerebral cortex
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002886
name: lateral amygdaloid nucleus
synonym: "lateral nucleus of amygdala" EXACT [FMA:61866]
synonym: "lateral principal nucleus of amygdala" EXACT [FMA:61866]
synonym: "nucleus amygdalae lateralis" RELATED [BTO:0002704]
xref: ABA:LA
xref: BM:Tel-Am-ALA
xref: BTO:0002704
xref: FMA:61866
xref: MA:0002926
xref: NIF_GrossAnatomy:birnlex_2687
is_a: UBERON:0002619 ! regional part of cerebral cortex
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002887
name: basal amygdaloid nucleus
synonym: "basolateral amygaloid nucleus" EXACT [NIF_GrossAnatomy:birnlex_2692]
synonym: "basolateral amygdalar nucleus" EXACT [NIF_GrossAnatomy:birnlex_2692]
synonym: "basolateral amygdaloid nucleus" EXACT [FMA:68855]
synonym: "basolateral nucleus (de olmos)" EXACT []
synonym: "intermediate principal nucleus" EXACT [FMA:68855]
synonym: "nucleus amygdalae basalis lateralis" EXACT [FMA:68855, FMA:TA]
xref: ABA:BLA
xref: FMA:68855
xref: MA:0002921
xref: NIF_GrossAnatomy:birnlex_2692
property_value: "spatially_disjoint_from" UBERON:0002023
is_a: UBERON:0002619 ! regional part of cerebral cortex
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002888
name: lateral part of basal amygdaloid nucleus
synonym: "lateral basal nucleus of amygdala" EXACT [NIF_GrossAnatomy:birnlex_2695]
synonym: "lateral basal nucleus of the amygdala" EXACT [FMA:68857]
synonym: "lateral division of basal nucleus" EXACT [NIF_GrossAnatomy:birnlex_2695]
synonym: "lateral division of the basal nucleus" EXACT [FMA:68857]
xref: FMA:68857
xref: NIF_GrossAnatomy:birnlex_2695
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0002887 ! basal amygdaloid nucleus
[Term]
id: UBERON:0002889
name: medial part of basal amygdaloid nucleus
synonym: "basomedial amygdalar nucleus" EXACT [ABA:BMA]
synonym: "basomedial amygdaloid nucleus" EXACT [FMA:68858, MA:0002922]
synonym: "medial basal nucleus of amygdala" EXACT [FMA:68858]
synonym: "medial division of basal nucleus" EXACT [FMA:68858]
synonym: "nucleus amygdalae basalis medialis" EXACT [FMA:68858, FMA:TA]
xref: ABA:BMA
xref: FMA:68858
xref: MA:0002922
xref: NIF_GrossAnatomy:birnlex_2696
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0002887 ! basal amygdaloid nucleus
[Term]
id: UBERON:0002890
name: anterior amygdaloid area
synonym: "anterior amygaloid area" EXACT [NIF_GrossAnatomy:birnlex_2698]
synonym: "anterior amygdalar area" EXACT [NIF_GrossAnatomy:birnlex_2698]
xref: ABA:AAA
xref: BM:Tel-Am-AAA
xref: FMA:61861
xref: MA:0002919
xref: NIF_GrossAnatomy:birnlex_2698
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002891
name: cortical amygdaloid nucleus
synonym: "nucleus amygdalae corticalis" RELATED [BTO:0002703]
synonym: "posterior cortical amygdaloid nucleus" EXACT [NIF_GrossAnatomy:birnlex_2700]
synonym: "posterior cortical nucleus of amygdala" EXACT [FMA:61862]
xref: BTO:0002703
xref: EV:0100193
xref: FMA:61862
xref: MA:0002924
xref: NIF_GrossAnatomy:birnlex_2700
is_a: UBERON:0002619 ! regional part of cerebral cortex
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002892
name: medial amygdaloid nucleus
synonym: "medial amygalar nucleus" EXACT [NIF_GrossAnatomy:birnlex_2701]
synonym: "medial nucleus of amygdala" EXACT [FMA:74046]
synonym: "nucleus amygdalae medialis" RELATED [BTO:0002702]
xref: BM:Tel-Am-AME
xref: BTO:0002702
xref: EV:0100192
xref: FMA:74046
xref: MA:0002927
xref: NIF_GrossAnatomy:birnlex_2701
is_a: UBERON:0002619 ! regional part of cerebral cortex
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002893
name: nucleus of lateral olfactory tract
synonym: "lateral olfactory tract nucleus" EXACT [FMA:61865]
synonym: "nucleus of the lateral olfactory tract (ganser)" EXACT [NIF_GrossAnatomy:birnlex_2702]
xref: ABA:NLOT
xref: BM:Tel-NLOT
xref: FMA:61865
xref: NIF_GrossAnatomy:birnlex_2702
property_value: "spatially_disjoint_from" UBERON:0002266
property_value: "spatially_disjoint_from" UBERON:0002590
property_value: "spatially_disjoint_from" UBERON:0004069
is_a: UBERON:0002619 ! regional part of cerebral cortex
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002894
name: olfactory cortex
def: "The olfactory cortex is involved in the perception of smell. It receives input from the olfactory bulb and is responsible for the identification of odors[GO]." [Wikipedia:Olfactory_cortex]
comment: Editor note - consider relationship: receives_input_from UBERON:0002264 {source="GO"}
subset: uberon_slim
synonym: "archaeocortex" RELATED [BTO:0001446]
synonym: "archeocortex" RELATED [BTO:0001446]
synonym: "olfactory lobe" RELATED [MA:0000193]
xref: BTO:0001446
xref: EHDAA2:0001289
xref: EHDAA:5482
xref: EMAPA:17779
xref: MA:0000193
xref: ncithesaurus:Olfactory_Lobe
xref: NIF_GrossAnatomy:birnlex_2707
xref: VHOG:0000325
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0005366 ! olfactory lobe
[Term]
id: UBERON:0002895
name: secondary olfactory cortex
def: "Brodmann's area 28; major gateway for neocortical input to the hippocampus; origin of the perforant pathway; a component of the medial temporal lobe memory system. (CSP) * The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed)." [NIF_GrossAnatomy:birnlex_2709]
comment: FMA considers this a syn of entorhinal cortex. See also brodman definition
subset: uberon_slim
synonym: "area 28 of Brodmann" EXACT []
synonym: "area 28 of Brodmann (crosby)" EXACT []
synonym: "Brodmann area 28" EXACT []
synonym: "entorhinal cortex" RELATED [FMA:72356]
synonym: "secondary olfactory areas" EXACT [NIF_GrossAnatomy:birnlex_2709]
synonym: "secondary olfactory cortex" EXACT [FMA:72356]
synonym: "secondary olfactory cortical area (carpenter)" EXACT []
xref: BTO:0002650
xref: BTO:0004345
xref: EV:0100179
xref: FMA:68625
xref: NIF_GrossAnatomy:birnlex_2709
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 {source="FMA"} ! cerebral cortex
relationship: part_of UBERON:0002894 {source="NIF"} ! olfactory cortex
[Term]
id: UBERON:0002896
name: telodiencephalic fissure
synonym: "telo-diencephalic fissure" EXACT [FMA:83726]
xref: FMA:83726
xref: NIF_GrossAnatomy:birnlex_4001
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002897
name: cistern of lamina terminalis
synonym: "cisterna lamina terminalis" EXACT [NIF_GrossAnatomy:birnlex_4002]
synonym: "lamina terminalis cistern" EXACT [FMA:74516]
xref: FMA:74516
xref: ncithesaurus:Lamina_Terminalis_Cistern
xref: NIF_GrossAnatomy:birnlex_4002
xref: SCTID:12692002
is_a: UBERON:0004050 ! subarachnoid cistern
[Term]
id: UBERON:0002898
name: chiasmatic cistern
def: "In front, the cisterna interpeduncularis extends forward across the optic chiasma, forming the cistern of chiasma or chiasmatic cistern, and on to the upper surface of the corpus callosum, for the arachnoid stretches across from one cerebral hemisphere to the other immediately beneath the free border of the falx cerebri, and thus leaves a space in which the anterior cerebral arteries are contained. The 'leaf' or extension of the chiasmatic cistern above the chiasma, which is separated from the optic recess of the third ventricle by the thin lamina terminalis, has been called the suprachiasmatic cistern. As spaces filled with freely circulating cerebrospinal fluid, cisterns receive little direct study, but are mentioned in pathological conditions. Cysts and tumors of the lamina terminalis extend into the suprachiasmatic cistern, as can pituitary tumors, or the cistern can be partially or completely effaced by injury and hematoma or by blockage of the cerebral aqueduct. [WP,unvetted]." [Wikipedia:Chiasmatic_cistern]
subset: uberon_slim
synonym: "cisterna chiasmatica" EXACT [NIF_GrossAnatomy:birnlex_4003]
synonym: "cisterna chiasmatica" RELATED LATIN [Wikipedia:Chiasmatic_cistern]
synonym: "cisterna chiasmatis" EXACT [NIF_GrossAnatomy:birnlex_4003]
xref: EMAPA:19057
xref: EMAPA:19150
xref: EMAPA:25081
xref: FMA:74515
xref: ncithesaurus:Chiasmatic_Cistern
xref: NIF_GrossAnatomy:birnlex_4003
xref: SCTID:47947006
is_a: UBERON:0004050 ! subarachnoid cistern
[Term]
id: UBERON:0002899
name: hippocampal sulcus
def: "The hippocampal sulcus, also known as the hippocampal fissure, is a sulcus that separates the dentate gyrus from the subiculum and the CA1 field in the hippocampus. [WP,unvetted]." [Wikipedia:Hippocampal_sulcus]
comment: AO notes - two classes in ncit (in general ncit distinguishes between fissure and sulcus, whereas FMA treats these as exact synonyms)
subset: uberon_slim
synonym: "dentate fissure" EXACT [FMA:83747]
synonym: "hippocampal fissure" EXACT [FMA:83747]
synonym: "sulcus hippocampalis, sulcus hippocampi" RELATED LATIN [Wikipedia:Hippocampal_sulcus]
synonym: "sulcus hippocampi" EXACT [NIF_GrossAnatomy:birnlex_4004]
xref: FMA:83747
xref: http://upload.wikimedia.org/wikipedia/commons/3/31/Hippocampus_%28brain%29.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Hippocampus_%28brain%29.jpg/200px-Hippocampus_%28brain%29.jpg
xref: ncithesaurus:Hippocampal_Fissure
xref: NIF_GrossAnatomy:birnlex_4004
xref: SCTID:369101000
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002900
name: transverse occipital sulcus
synonym: "sulcus occipitalis transversus" EXACT [NIF_GrossAnatomy:birnlex_4013]
xref: BTO:0003786
xref: FMA:83786
xref: NIF_GrossAnatomy:birnlex_4013
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002901
name: posterior calcarine sulcus
synonym: "postcalcarine sulcus" EXACT [FMA:83787]
synonym: "posterior calcarine fissure" EXACT [FMA:83787]
synonym: "posterior part of calcarine sulcus" EXACT [FMA:83787]
synonym: "sulcus calcarinus posterior" EXACT [NIF_GrossAnatomy:birnlex_4015]
xref: FMA:83787
xref: NIF_GrossAnatomy:birnlex_4015
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002902
name: occipital pole
def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]." [Wikipedia:Occipital_pole]
subset: uberon_slim
synonym: "polus occipitalis" EXACT [NIF_GrossAnatomy:birnlex_4016]
synonym: "polus occipitalis cerebri" RELATED [BTO:0001868]
xref: BTO:0001868
xref: FMA:74892
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG
xref: NIF_GrossAnatomy:birnlex_4016
xref: SCTID:314160003
is_a: UBERON:0009899 ! pole of cerebral hemisphere
relationship: part_of UBERON:0002021
intersection_of: UBERON:0009899 ! pole of cerebral hemisphere
intersection_of: part_of UBERON:0002021 ! occipital lobe
relationship: part_of UBERON:0002021 ! occipital lobe
relationship: part_of UBERON:0002021 {source="BTO"} ! occipital lobe
[Term]
id: UBERON:0002903
name: lunate sulcus
synonym: "lunate fissure" EXACT [FMA:83788]
synonym: "sulcus lunatus" EXACT [NIF_GrossAnatomy:birnlex_4017]
synonym: "sulcus simialis" EXACT [NIF_GrossAnatomy:birnlex_4017]
xref: BM:Tel-Cx-LUS
xref: FMA:83788
xref: ncithesaurus:Lunate_Sulcus
xref: NIF_GrossAnatomy:birnlex_4017
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002904
name: lateral occipital sulcus
def: "In the occipital lobe, the lateral occipital sulcus extends from behind forward, and divides the lateral surface of the occipital lobe into a superior and an inferior gyrus, which are continuous in front with the parietal and temporal lobes. [WP,unvetted]." [Wikipedia:Lateral_occipital_sulcus]
subset: uberon_slim
synonym: "sulcus occipitalis lateralis" EXACT [NIF_GrossAnatomy:birnlex_4018]
xref: FMA:83785
xref: http://upload.wikimedia.org/wikipedia/commons/2/2c/Gray727_lateral-occipital_sulcus.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2c/Gray727_lateral-occipital_sulcus.svg/200px-Gray727_lateral-occipital_sulcus.svg.png
xref: ncithesaurus:Lateral-occipital_Sulcus
xref: NIF_GrossAnatomy:birnlex_4018
xref: SCTID:369219003
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002905
name: intralingual sulcus
synonym: "sulcus intralingualis" EXACT [NIF_GrossAnatomy:birnlex_4019]
xref: FMA:83789
xref: NIF_GrossAnatomy:birnlex_4019
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002906
name: anterior occipital sulcus
synonym: "ascending limb of the inferior temporal sulcus" EXACT [NIF_GrossAnatomy:birnlex_4023]
synonym: "posterior inferior temporal sulcus" EXACT [NIF_GrossAnatomy:birnlex_4023]
synonym: "sulci occipitales superiores" EXACT [NIF_GrossAnatomy:birnlex_4023]
synonym: "sulcus annectans" EXACT [NIF_GrossAnatomy:birnlex_4023]
synonym: "sulcus occipitalis anterior" EXACT [NIF_GrossAnatomy:birnlex_4023]
xref: FMA:75758
xref: NIF_GrossAnatomy:birnlex_4023
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002907
name: superior postcentral sulcus
synonym: "postcentral dimple" EXACT [FMA:83775]
synonym: "sulcus postcentralis superior" EXACT [NIF_GrossAnatomy:birnlex_4025]
xref: FMA:83775
xref: NIF_GrossAnatomy:birnlex_4025
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002908
name: subparietal sulcus
synonym: "splenial sulcus" EXACT [FMA:83777]
synonym: "sulcus subparietalis" EXACT [NIF_GrossAnatomy:birnlex_4026]
synonym: "suprasplenial sulcus" EXACT [FMA:83777]
xref: BM:Tel-Cx-SPS
xref: FMA:83777
xref: NIF_GrossAnatomy:birnlex_4026
xref: SCTID:279352008
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002909
name: posterior subcentral sulcus
synonym: "sulcus subcentralis posterior" EXACT [NIF_GrossAnatomy:birnlex_4027]
xref: FMA:83778
xref: NIF_GrossAnatomy:birnlex_4027
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002910
name: posterior ascending limb of lateral sulcus
synonym: "ascending terminal ramus of sylvian fissure" EXACT []
synonym: "posterior ascending limb of lateral fissure" EXACT [FMA:83761]
synonym: "posterior ramus of lateral cerebral sulcus" EXACT [FMA:83761]
synonym: "ramus posterior ascendens fissurae lateralis" EXACT [NIF_GrossAnatomy:birnlex_4028]
synonym: "ramus posterior sulci lateralis cerebri" EXACT [FMA:83761, FMA:TA]
xref: FMA:83761
xref: NIF_GrossAnatomy:birnlex_4028
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002911
name: parietal operculum
def: "The parietal operculum, forming the superior bank of the sylvian fissure, as studied in the cat, contains the secondary somatosensory representation, 'S-II', and a second somatotopic representation (parietal ventral, or PV). Anatomically, primate S-II receives inputs from area 3 and area 1, and projects to PV and area 7. PV has projections to area 5 and premotor areas. [WP,unvetted]." [Wikipedia:Parietal_operculum]
subset: uberon_slim
synonym: "operculum parietale" EXACT [NIF_GrossAnatomy:birnlex_4029]
xref: FMA:74889
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Operculum.png/200px-Operculum.png
xref: NIF_GrossAnatomy:birnlex_4029
xref: SCTID:362353000
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0010262 ! operculum of brain
[Term]
id: UBERON:0002912
name: marginal sulcus
def: "The marginal sulcus is the portion of the cingulate sulcus adjacent to the paracentral lobule and the precuneus. It is sometimes known as the 'marginal part of the cingulate sulcus'. [WP,unvetted]." [Wikipedia:Marginal_sulcus]
subset: uberon_slim
synonym: "marginal branch of cingulate sulcus" EXACT [FMA:83773]
synonym: "marginal ramus of cingulate sulcus" EXACT [FMA:83773]
synonym: "ramus marginalis sulci cingulati" EXACT [NIF_GrossAnatomy:birnlex_4030]
synonym: "ramus marginalis sulci cinguli" EXACT [FMA:83773, FMA:TA]
synonym: "ramus marginalis; sulcus marginalis" RELATED LATIN [Wikipedia:Marginal_sulcus]
xref: FMA:83773
xref: http://upload.wikimedia.org/wikipedia/commons/d/d0/Gray727_marginal_sulcus.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Gray727_marginal_sulcus.svg/200px-Gray727_marginal_sulcus.svg.png
xref: NIF_GrossAnatomy:birnlex_4030
xref: SCTID:279351001
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002913
name: intraparietal sulcus
def: "The intraparietal sulcus (IPS) is located on the lateral surface of the parietal lobe, and consists of an oblique and a horizontal portion. The IPS contains a series of functionally distinct subregions that have been intensively investigated using both single cell neurophysiology in primates and human functional neuroimaging. Its principal functions are related to perceptual-motor coordination (for directing eye movements and reaching) and visual attention. The IPS is also thought to play a role in other functions, including processing symbolic numerical information, visuospatial working memory and interpreting the intent of others. [WP,unvetted]." [Wikipedia:Intraparietal_sulcus]
subset: uberon_slim
synonym: "interparietal fissure" EXACT [FMA:83772]
synonym: "intraparietal fissure" EXACT [FMA:83772]
synonym: "intraparietal sulcus of Turner" RELATED [BTO:0003787]
synonym: "sulcus interparietalis" EXACT [NIF_GrossAnatomy:birnlex_4031]
synonym: "sulcus intraparietalis" RELATED [BTO:0003787]
synonym: "sulcus intraparietalis" RELATED LATIN [Wikipedia:Intraparietal_sulcus]
synonym: "Turner sulcus" RELATED [BTO:0003787]
xref: BM:Tel-Cx-IPS
xref: BTO:0003787
xref: FMA:83772
xref: http://upload.wikimedia.org/wikipedia/commons/2/2a/Gray726_intraparietal_sulcus.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray726_intraparietal_sulcus.svg/200px-Gray726_intraparietal_sulcus.svg.png
xref: ncithesaurus:Intraparietal_Sulcus
xref: NIF_GrossAnatomy:birnlex_4031
xref: SCTID:279338006
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002914
name: inferior postcentral sulcus
synonym: "sulcus postcentralis inferior" EXACT [NIF_GrossAnatomy:birnlex_4032]
xref: FMA:83776
xref: NIF_GrossAnatomy:birnlex_4032
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002915
name: postcentral sulcus
def: "The postcentral sulcus of the parietal lobe lies parallel to, and behind, the central sulcus in the human brain. (A sulcus is one of the prominent grooves on the surface of the brain. ) The postcentral sulcus divides the postcentral gyrus from the remainder of the parietal lobe. [WP,unvetted]." [Wikipedia:Postcentral_sulcus]
subset: uberon_slim
synonym: "postcentral fissure of cerebral hemisphere" EXACT [FMA:83774]
synonym: "postcentral fissure-1" EXACT [FMA:83774]
synonym: "structure of postcentral sulcus" EXACT [NIF_GrossAnatomy:birnlex_4033]
synonym: "sulcus postcentralis" EXACT [NIF_GrossAnatomy:birnlex_4033]
synonym: "sulcus postcentralis" RELATED LATIN [Wikipedia:Postcentral_sulcus]
xref: BM:Tel-Cx-PoCS
xref: FMA:83774
xref: http://upload.wikimedia.org/wikipedia/commons/6/6c/Postcentral_sulcus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Postcentral_sulcus.png/200px-Postcentral_sulcus.png
xref: ncithesaurus:Postcentral_Sulcus
xref: NIF_GrossAnatomy:birnlex_4033
xref: SCTID:279339003
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002916
name: central sulcus
def: "The central sulcus is a fold in the cerebral cortex of brains in vertebrates. Also called the central fissure, it was originally called the fissure of Rolando or the Rolandic fissure, after Luigi Rolando. The central sulcus is a prominent landmark of the brain, separating the parietal lobe from the frontal lobe and the primary motor cortex from the primary somatosensory cortex. [WP,unvetted]." [Wikipedia:Central_sulcus]
subset: uberon_slim
synonym: "central cerebral sulcus" EXACT [FMA:83752]
synonym: "central fissure" EXACT [FMA:83752]
synonym: "central sulcus of rolando" EXACT []
synonym: "fissure of rolando" EXACT []
synonym: "rolandic fissure" EXACT [NIF_GrossAnatomy:birnlex_4035]
synonym: "sulcus centralis" EXACT [NIF_GrossAnatomy:birnlex_4035]
synonym: "sulcus centralis (rolandi)" EXACT [NIF_GrossAnatomy:birnlex_4035]
synonym: "sulcus centralis cerebri" EXACT [NIF_GrossAnatomy:birnlex_4035]
synonym: "sulcus centralis cerebri" RELATED LATIN [Wikipedia:Central_sulcus]
synonym: "sulcus of rolando" EXACT []
xref: BM:Tel-Cx-CS
xref: FMA:83752
xref: http://upload.wikimedia.org/wikipedia/commons/8/8e/Gray726_central_sulcus.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Central_sulcus.png/200px-Central_sulcus.png
xref: ncithesaurus:Central_Sulcus_of_Rolando
xref: NIF_GrossAnatomy:birnlex_4035
xref: OpenCyc:Mx4rvjMKxpwpEbGdrcN5Y29ycA
xref: SCTID:279340001
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002917
name: regional part of inferior colliculus
def: "A regional part of brain that is part of a inferior colliculus [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of caudal colliculus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of inferior colliculus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of posterior colliculus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of caudal colliculus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of inferior colliculus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of posterior colliculus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of caudal colliculus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of inferior colliculus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of posterior colliculus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "brain biological structure of caudal colliculus" EXACT [OBOL:automatic]
synonym: "brain biological structure of inferior colliculus" EXACT [OBOL:automatic]
synonym: "brain biological structure of posterior colliculus" EXACT [OBOL:automatic]
synonym: "brain biological structure of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "caudal colliculus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "caudal colliculus biological structure of brain" EXACT [OBOL:automatic]
synonym: "caudal colliculus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "caudal colliculus brain biological structure" EXACT [OBOL:automatic]
synonym: "caudal colliculus neuraxis segment" EXACT [OBOL:automatic]
synonym: "caudal colliculus regional part of brain" EXACT [OBOL:automatic]
synonym: "caudal colliculus segment of brain" EXACT [OBOL:automatic]
synonym: "inferior colliculus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "inferior colliculus biological structure of brain" EXACT [OBOL:automatic]
synonym: "inferior colliculus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "inferior colliculus brain biological structure" EXACT [OBOL:automatic]
synonym: "inferior colliculus neuraxis segment" EXACT [OBOL:automatic]
synonym: "inferior colliculus regional part of brain" EXACT [OBOL:automatic]
synonym: "inferior colliculus segment" EXACT [FMA:77871]
synonym: "inferior colliculus segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of caudal colliculus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of inferior colliculus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of posterior colliculus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "posterior colliculus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "posterior colliculus biological structure of brain" EXACT [OBOL:automatic]
synonym: "posterior colliculus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "posterior colliculus brain biological structure" EXACT [OBOL:automatic]
synonym: "posterior colliculus neuraxis segment" EXACT [OBOL:automatic]
synonym: "posterior colliculus regional part of brain" EXACT [OBOL:automatic]
synonym: "posterior colliculus segment of brain" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum biological structure of brain" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum brain biological structure" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum neuraxis segment" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum regional part of brain" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum segment of brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of caudal colliculus" EXACT [OBOL:automatic]
synonym: "regional part of brain of inferior colliculus" EXACT [OBOL:automatic]
synonym: "regional part of brain of posterior colliculus" EXACT [OBOL:automatic]
synonym: "regional part of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "segment of brain of caudal colliculus" EXACT [OBOL:automatic]
synonym: "segment of brain of inferior colliculus" EXACT [OBOL:automatic]
synonym: "segment of brain of posterior colliculus" EXACT [OBOL:automatic]
synonym: "segment of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "segment of inferior colliculus" EXACT [NIF_GrossAnatomy:birnlex_4036]
xref: FMA:77871
xref: NIF_GrossAnatomy:birnlex_4036
is_a: UBERON:0002966 ! regional part of midbrain tectum
relationship: part_of UBERON:0001946
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001946 ! inferior colliculus
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0002918
name: medial parabrachial nucleus
def: "The Medial parabrachial nucleus is a nucleus of the pons which constitutes part of the pneumotaxic center. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [Wikipedia:Medial_parabrachial_nucleus]
subset: uberon_slim
synonym: "nucleus parabrachialis medialis" RELATED LATIN [Wikipedia:Medial_parabrachial_nucleus]
xref: FMA:72480
xref: NIF_GrossAnatomy:birnlex_4038
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002919
name: anterior parolfactory sulcus
synonym: "paraolfactory sulci" EXACT PLURAL [NIF_GrossAnatomy:birnlex_4039]
synonym: "paraolfactory sulcus" EXACT [FMA:83744]
synonym: "sulcus parolfactorius anterior" EXACT [NIF_GrossAnatomy:birnlex_4039]
xref: FMA:83744
xref: NIF_GrossAnatomy:birnlex_4039
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002920
name: callosal sulcus
def: "The callosal sulcus is a sulcus in the brain between the cingulate gyrus and corpus callosum, below the longitudinal cerebral fissure. [WP,unvetted]." [Wikipedia:Callosal_sulcus]
subset: uberon_slim
synonym: "sulcus corporis callosi" EXACT [NIF_GrossAnatomy:birnlex_4040]
synonym: "sulcus corporis callosi" RELATED LATIN [Wikipedia:Callosal_sulcus]
synonym: "sulcus of corpus callosum" EXACT [FMA:83743]
xref: FMA:83743
xref: http://upload.wikimedia.org/wikipedia/commons/4/43/Gray727_sulcus_of_the_corpus_callosum.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray727_sulcus_of_the_corpus_callosum.svg/200px-Gray727_sulcus_of_the_corpus_callosum.svg.png
xref: NIF_GrossAnatomy:birnlex_4040
xref: SCTID:279349000
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002921
name: longitudinal fissure
def: "The deep groove which separates the two hemispheres of the vertebrate brain. The falx cerebri, a dural brain covering, lies within the medial longitudinal fissure. [WP,unvetted]." [Wikipedia:Medial_longitudinal_fissure]
subset: uberon_slim
synonym: "fissura interhemispherica" EXACT [NIF_GrossAnatomy:birnlex_4041]
synonym: "fissura longitudinalis cerebrales" EXACT [NIF_GrossAnatomy:birnlex_4041]
synonym: "fissura longitudinalis cerebri" EXACT [NIF_GrossAnatomy:birnlex_4041]
synonym: "fissura longitudinalis magna" EXACT [NIF_GrossAnatomy:birnlex_4041]
synonym: "hemispheric sulcus" EXACT [FMA:83727]
synonym: "interhemispheric fissure" EXACT [FMA:83727]
synonym: "longitudinal cerebral fissure" EXACT [FMA:83727]
synonym: "longitudinal fissure of hemisphere" EXACT [NIF_GrossAnatomy:birnlex_4041]
synonym: "longitudinal fissure of the cerebrum" EXACT [NIF_GrossAnatomy:birnlex_4041]
synonym: "longitudinal sulcus" EXACT [FMA:83727]
synonym: "medial longitudinal fissure" EXACT [FMA:83727]
synonym: "sagittal fissure" EXACT [FMA:83727]
xref: FMA:83727
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Hemispheres.png/200px-Hemispheres.png
xref: ncithesaurus:Longitudinal_Fissure
xref: NIF_GrossAnatomy:birnlex_4041
xref: OpenCyc:Mx4rwJlWu5wpEbGdrcN5Y29ycA
xref: SCTID:369225004
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0000315 ! subarachnoid space
[Term]
id: UBERON:0002922
name: olfactory trigone
def: "The olfactory trigone is a small triangular area in front of the anterior perforated substance. Its apex, directed forward, occupies the posterior part of the olfactory sulcus, and is brought into view by throwing back the olfactory tract. [WP,unvetted]." [Wikipedia:Olfactory_trigone]
subset: uberon_slim
synonym: "trigonum olfactorium" EXACT [NIF_GrossAnatomy:birnlex_4042]
synonym: "trigonum olfactorium" RELATED LATIN [Wikipedia:Olfactory_trigone]
xref: FMA:74883
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: ncithesaurus:Trigonum_Olfactorium
xref: NIF_GrossAnatomy:birnlex_4042
xref: SCTID:369102007
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002923
name: posterior parolfactory sulcus
xref: FMA:83745
xref: NIF_GrossAnatomy:birnlex_4043
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002924
name: terminal nerve
def: "The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest." [PMID:15821344, Wikipedia:Terminal_nerve, ZFIN:ZDB-PUB-041202-1]
comment: PMID:2286018 state: 'The presence of an additional cranial nerve (the nervus terminalis or cranial nerve zero) is well documented in many non-human vertebrate species. However, its existence in the adult human has been disputed. The present study focused on the structure and incidence of this nerve in the adult human brain. The nerve was examined post-mortem in 10 adult brains using dissection microscopy, light microscopy, transmission electron microscopy, and immunohistochemistry. In all specimens, the nervus terminalis was identified bilaterally as a microscopic plexus of unmyelinated peripheral nerve fascicles in the subarachnoid space covering the gyrus rectus of the orbital surface of the frontal lobes. The plexus appeared in the region of the cribriform plate of the ethmoid and coursed posteriorly to the vicinity of the olfactory trigone, medial olfactory gyrus, and lamina terminalis. We conclude that the terminal nerve is a common finding in the adult human brain, confirming early light microscopic reports.'
subset: uberon_slim
synonym: "cranial nerve 0" EXACT [Wikipedia:Terminal_nerve]
synonym: "cranial nerve zero" EXACT [Wikipedia:Terminal_nerve]
synonym: "nervus terminalis" EXACT [ZFA:0001356]
xref: EFO:0003678
xref: NIF_GrossAnatomy:birnlex_4044
xref: TAO:0001356
xref: ZFA:0001356
property_value: UBPROP:0000001 "The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest. Whitlock 2004. Also see Grens, Greenwood and Fernald, Brain Behav Evol 2005; 66(1):1-9.[TAO]" xsd:string
is_a: UBERON:0001785 {source="ZFA"} ! cranial nerve
[Term]
id: UBERON:0002925
name: trigeminal nucleus
comment: note massive inconsistencies between GO, MA, wikipedia. Part of pons in MA, but this leads to inconsistencies with ABA. See https://sourceforge.net/tracker/?func=detail&aid=3291162&group_id=76834&atid=1205376
subset: uberon_slim
synonym: "nucleus mesencephalicus nervi trigemini" RELATED [BTO:0001074]
synonym: "nucleus mesencephalicus trigeminalis" RELATED [BTO:0001074]
synonym: "nucleus tractus mesencephali nervi trigeminalis" RELATED [BTO:0001074]
synonym: "trigeminal nuclear complex nucleus" EXACT [FMA:71247]
synonym: "trigeminal nucleus" EXACT [FMA:71248]
synonym: "trigeminal V nucleus" EXACT [MA:0001028]
xref: BM:V
xref: BTO:0001074
xref: EV:0100271
xref: FMA:71247
xref: GAID:604
xref: MA:0001028
xref: MESH:A.08.186.211.132.931
xref: ncithesaurus:Trigeminal_Nucleus
xref: NIF_GrossAnatomy:nifext_11
xref: SCTID:280164007
xref: VHOG:0001353
is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain
relationship: part_of UBERON:0007641
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0007641 ! trigeminal nuclear complex
relationship: part_of UBERON:0007641 ! trigeminal nuclear complex
[Term]
id: UBERON:0002926
name: gustatory epithelium
comment: editor note - see also epithelium of tongue and subclasses
xref: FMA:62412
xref: NIF_GrossAnatomy:birnlex_4099
is_a: UBERON:0003357 ! epithelium of tongue
is_a: UBERON:0006934 {source="FMA"} ! sensory epithelium
relationship: part_of UBERON:0001033 ! gustatory system
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0002928
name: dentate gyrus polymorphic layer
xref: MA:0002864
xref: NIF_GrossAnatomy:birnlex_4128
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002304 ! layer of dentate gyrus
[Term]
id: UBERON:0002929
name: dentate gyrus pyramidal layer
xref: MA:0000948
is_a: UBERON:0002304 ! layer of dentate gyrus
[Term]
id: UBERON:0002930
name: tectopontine tract
synonym: "fibrae tectopontinae" EXACT [FMA:72505, FMA:TA]
synonym: "tectopontine fibers" EXACT [FMA:72505]
synonym: "tectopontine fibres" EXACT [FMA:72505]
xref: FMA:72505
xref: NIF_GrossAnatomy:birnlex_701
xref: SCTID:3301002
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002931
name: dorsal septal nucleus
xref: FMA:61877
xref: NIF_GrossAnatomy:birnlex_704
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002932
name: trapezoid body
def: "The trapezoid body is part of the acoustic pathway. It is a bundle of fibers and cells in the pontine tegmentum. It consists of fibers arising from the ventral cochlear nucleus. A collection of nerve cells inside forms a trapezoid nucleus. The superior olivary nucleus is situated on the dorsal surface of the trapezoid body. Most nerve fibers pass directly from the superior olivary nuclei to the inferior colliculus. Axons leaving the ventral cochlear nucleus (VCN) form a broad pathway that crosses under the brain stem in the trapezoid body. A thin pathway, the intermediate acoustic stria, also leaves the VCN, merging with the trapezoid body close to the superior olivary complex, where many of its axons synapse. Axons leaving the dorsal cochlear nucleus (DCN) form the dorsal acoustic stria, which reaches primarily the contralateral dorsal nucleus of the lateral lemniscus and the central nucleus of the inferior colliculus. [WP,unvetted]." [Wikipedia:Trapezoid_body]
subset: uberon_slim
synonym: "corpus trapezoideum" RELATED LATIN [Wikipedia:Trapezoid_body]
xref: BM:TB
xref: FMA:72487
xref: http://upload.wikimedia.org/wikipedia/commons/b/bb/Gray760.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png
xref: NIF_GrossAnatomy:birnlex_707
xref: SCTID:369019006
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002933
name: nucleus of anterior commissure
synonym: "anterior commissure nucleus" EXACT [FMA:61883]
synonym: "bed nucleus of anterior commissure" EXACT [FMA:61883]
synonym: "nucleus of commissura anterior" EXACT [FMA:61883]
xref: ABA:BAC
xref: BM:Tel-ACN
xref: FMA:61883
xref: NIF_GrossAnatomy:birnlex_712
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002934
name: ventral oculomotor nucleus
synonym: "ventral oculomotor cell column" EXACT [FMA:72422]
xref: FMA:72422
xref: NIF_GrossAnatomy:birnlex_713
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002935
name: magnocellular part of ventral anterior nucleus
synonym: "magnocellular division of ventral anterior nucleus of thalamus" EXACT [FMA:62192]
synonym: "magnocellular ventral anterior nucleus" EXACT [NIF_GrossAnatomy:birnlex_716]
synonym: "nucleus lateropolaris (magnocellularis)" EXACT [NIF_GrossAnatomy:birnlex_716]
synonym: "nucleus lateropolaris magnocellularis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_716]
synonym: "nucleus rostralis lateralis situs perifascicularis" EXACT [NIF_GrossAnatomy:birnlex_716]
synonym: "nucleus thalamicus ventral anterior, pars magnocellularis" EXACT [NIF_GrossAnatomy:birnlex_716]
synonym: "nucleus ventralis anterior, pars magnocellularis" EXACT [NIF_GrossAnatomy:birnlex_716]
synonym: "pars magnocellularis nuclei ventralis anterior thalami" EXACT [FMA:62192, FMA:TA]
synonym: "ventral anterior nucleus, magnocellular part" EXACT [FMA:62192]
synonym: "ventral anterior nucleus, pars magnocellularis" EXACT [FMA:62192]
synonym: "ventral anterior thalamic nucleus, magnocellular part" EXACT [FMA:62192]
synonym: "ventroanterior thalamic nucleus, magnocellular part" EXACT [NIF_GrossAnatomy:birnlex_716]
xref: BM:Die-Th-VA-VAmc
xref: FMA:62192
xref: NIF_GrossAnatomy:birnlex_716
is_a: UBERON:0003528 ! brain grey matter
relationship: part_of UBERON:0002637 {source="FMA"} ! ventral anterior nucleus
[Term]
id: UBERON:0002936
name: magnocellular part of red nucleus
synonym: "paleoruber" EXACT [FMA:72431]
synonym: "red nucleus, magnocellular part" EXACT [FMA:72431]
xref: FMA:72431
xref: NIF_GrossAnatomy:birnlex_720
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001947 ! red nucleus
[Term]
id: UBERON:0002937
name: parvicellular part of ventral anterior nucleus
synonym: "nucleus ventralis anterior (dewulf)" EXACT [NIF_GrossAnatomy:birnlex_722]
synonym: "nucleus ventralis anterior, pars parvicellularis" EXACT [NIF_GrossAnatomy:birnlex_722]
synonym: "ventral anterior nucleus, pars parvicellularis" EXACT [FMA:62191]
synonym: "ventral anterior thalamic nucleus, parvicellular part" EXACT [FMA:62191]
synonym: "ventralis anterior (jones)" EXACT []
xref: FMA:62191
xref: NIF_GrossAnatomy:birnlex_722
is_a: UBERON:0003528 ! brain grey matter
relationship: part_of UBERON:0002637 {source="FMA"} ! ventral anterior nucleus
[Term]
id: UBERON:0002938
name: parvocellular part of red nucleus
synonym: "neoruber" EXACT [FMA:72430]
synonym: "red nucleus, parvocellular part" EXACT [FMA:72430]
xref: FMA:72430
xref: NIF_GrossAnatomy:birnlex_725
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001947 ! red nucleus
[Term]
id: UBERON:0002939
name: ventral posteroinferior nucleus
synonym: "nucleus ventralis posterior inferior thalami" EXACT [FMA:62199, FMA:TA]
synonym: "ventral posterior inferior nucleus" EXACT [FMA:62199]
synonym: "ventral posterior inferior nucleus of thalamus" EXACT [FMA:62199]
synonym: "ventral posterior inferior thalamic nucleus" EXACT [FMA:62199]
xref: BM:Die-Th-VPI
xref: BTO:0002464
xref: BTO:0004373
xref: BTO:0004374
xref: EV:0100209
xref: FMA:62199
xref: NIF_GrossAnatomy:birnlex_728
xref: SCTID:369173003
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002940
name: anterior column of fornix
synonym: "anterior crus of fornix" EXACT [FMA:61966]
synonym: "anterior pillar of fornix" EXACT [FMA:61966]
xref: FMA:61966
xref: NIF_GrossAnatomy:birnlex_731
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002941
name: capsule of red nucleus
synonym: "red nuclear capsule" EXACT [FMA:72450]
xref: FMA:72450
xref: NIF_GrossAnatomy:birnlex_732
xref: SCTID:369245007
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001947 ! red nucleus
[Term]
id: UBERON:0002942
name: ventral posterolateral nucleus
def: "The ventral posterolateral nucleus (VPL) is a nucleus of the thalamus. Together with the ventral posteromedial nucleus (VPM) it constitutes the ventral posterior nucleus. [WP,unvetted]." [Wikipedia:Ventral_posterolateral_nucleus]
subset: uberon_slim
synonym: "nucleus ventralis posterior lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_737]
synonym: "nucleus ventralis posterolateralis" EXACT [NIF_GrossAnatomy:birnlex_737]
synonym: "nucleus ventralis posterolateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_737]
synonym: "nucleus ventralis posterolateralis thalami" RELATED LATIN [Wikipedia:Ventral_posterolateral_nucleus]
synonym: "nucleus ventralis thalami posterior lateralis" EXACT [NIF_GrossAnatomy:birnlex_737]
synonym: "posterolateral ventral nucleus of thalamus" EXACT [FMA:62200]
synonym: "posterolateral ventral nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_737]
synonym: "ventral posterolateral nucleus of thalamus" EXACT [FMA:62200]
synonym: "ventral posterolateral nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_737]
synonym: "ventral posterolateral thalamic nucleus" EXACT [FMA:62200]
xref: ABA:VPL
xref: FMA:62200
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_737
xref: SCTID:369171001
property_value: "spatially_disjoint_from" UBERON:0002945
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002943
name: lingual gyrus
def: "The lingual gyrus of the occipital lobe lies between the calcarine sulcus and the posterior part of the collateral sulcus; behind, it reaches the occipital pole; in front, it is continued on to the tentorial surface of the temporal lobe, and joins the hippocampal gyrus. The lingual gyrus is so-named because it resembles the tongue in shape. This region is believed to play an important role in dreaming and vision, especially in recognizing words, regardless of size, font, etc. Shunt [WP,unvetted]." [Wikipedia:Lingual_gyrus]
subset: uberon_slim
synonym: "gyrus lingualis" RELATED LATIN [Wikipedia:Lingual_gyrus]
synonym: "gyrus occipitotemporalis medialis" EXACT [FMA:61904, FMA:TA]
synonym: "lingula of cerebral hemisphere" EXACT [FMA:61904]
synonym: "medial occipitotemporal gyrus" EXACT [FMA:61904]
synonym: "medial occipitotemporal gyrus-2" EXACT [FMA:61904]
xref: FMA:61904
xref: http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray727_lingual_gyrus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Gray727_lingual_gyrus.png/200px-Gray727_lingual_gyrus.png
xref: NIF_GrossAnatomy:birnlex_740
xref: SCTID:279203007
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002021 ! occipital lobe
[Term]
id: UBERON:0002944
name: spinothalamic tract of medulla
def: "Part of spinothalamic tract that is in the medulla" [NIF_GrossAnatomy:birnlex_741]
subset: uberon_slim
synonym: "spinothalamic tract" BROAD [FMA:72644, NIF_GrossAnatomy:birnlex_741]
xref: FMA:72644
xref: GAID:703
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png
xref: MESH:A.08.186.854.761
xref: NIF_GrossAnatomy:birnlex_741
xref: SCTID:360570003
is_a: UBERON:0007702 {source="FMA"} ! tract of brain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata
relationship: part_of UBERON:0007703 ! spinothalamic tract
[Term]
id: UBERON:0002945
name: ventral posteromedial nucleus
def: "The ventral posteromedial nucleus is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_posteromedial_nucleus]
subset: uberon_slim
synonym: "arcuate nucleus of thalamus" EXACT [FMA:62202]
synonym: "arcuate nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_743]
synonym: "arcuate nucleus-3" EXACT [FMA:62202]
synonym: "nucleus arcuatus thalami" EXACT [NIF_GrossAnatomy:birnlex_743]
synonym: "nucleus semilunaris thalami" EXACT [NIF_GrossAnatomy:birnlex_743]
synonym: "nucleus ventralis posterior medialis thalami" EXACT [NIF_GrossAnatomy:birnlex_743]
synonym: "nucleus ventralis posteromedialis" EXACT [NIF_GrossAnatomy:birnlex_743]
synonym: "nucleus ventralis posteromedialis thalami" EXACT [NIF_GrossAnatomy:birnlex_743]
synonym: "nucleus ventralis posteromedialis thalami" RELATED LATIN [Wikipedia:Ventral_posteromedial_nucleus]
synonym: "nucleus ventrocaudalis anterior internus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_743]
synonym: "posteromedial ventral nucleus of thalamus" EXACT [FMA:62202]
synonym: "posteromedial ventral nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_743]
synonym: "semilunar nucleus" EXACT [FMA:62202]
synonym: "thalamic gustatory nucleus" EXACT [FMA:62202]
synonym: "ventral posterior medial nucleus" EXACT [FMA:62202]
synonym: "ventral posterior medial nucleus of thalamus" EXACT [NIF_GrossAnatomy:birnlex_743]
synonym: "ventral posteromedial nucleus of thalamus" EXACT [FMA:62202]
synonym: "ventral posteromedial nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_743]
synonym: "ventral posteromedial thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_743]
synonym: "ventroposteromedial nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_743]
xref: ABA:VPM
xref: BM:Die-Th-VPM
xref: FMA:62202
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/ThalamicNuclei.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_743
xref: SCTID:369172008
property_value: "spatially_disjoint_from" UBERON:0002942
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 {source="FMA"} ! nucleus of thalamus
relationship: part_of UBERON:0002596 {source="FMA"} ! ventral posterior nucleus
[Term]
id: UBERON:0002946
name: regional part of cerebellum
def: "A regional part of brain that is part of a cerebellum [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of cerebellum" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of epencephalon-1" EXACT [OBOL:automatic]
synonym: "biological structure of brain of cerebellum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of epencephalon-1" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of cerebellum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of epencephalon-1" EXACT [OBOL:automatic]
synonym: "brain biological structure of cerebellum" EXACT [OBOL:automatic]
synonym: "brain biological structure of epencephalon-1" EXACT [OBOL:automatic]
synonym: "cerebellum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "cerebellum biological structure of brain" EXACT [OBOL:automatic]
synonym: "cerebellum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "cerebellum brain biological structure" EXACT [OBOL:automatic]
synonym: "cerebellum neuraxis segment" EXACT [OBOL:automatic]
synonym: "cerebellum regional part of brain" EXACT [OBOL:automatic]
synonym: "cerebellum segment of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-1 anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-1 biological structure of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-1 brain anatomical structure" EXACT [OBOL:automatic]
synonym: "epencephalon-1 brain biological structure" EXACT [OBOL:automatic]
synonym: "epencephalon-1 neuraxis segment" EXACT [OBOL:automatic]
synonym: "epencephalon-1 regional part of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-1 segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of cerebellum" EXACT [OBOL:automatic]
synonym: "neuraxis segment of epencephalon-1" EXACT [OBOL:automatic]
synonym: "regional part of brain of cerebellum" EXACT [OBOL:automatic]
synonym: "regional part of brain of epencephalon-1" EXACT [OBOL:automatic]
synonym: "segment of brain of cerebellum" EXACT [OBOL:automatic]
synonym: "segment of brain of epencephalon-1" EXACT [OBOL:automatic]
synonym: "segment of cerebellum" EXACT [NIF_GrossAnatomy:birnlex_748]
xref: FMA:256150
xref: NIF_GrossAnatomy:birnlex_748
xref: SCTID:119242005
is_a: UBERON:0002680 ! regional part of metencephalon
relationship: part_of UBERON:0002037
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002947
name: frontal operculum
xref: FMA:74886
xref: NIF_GrossAnatomy:birnlex_751
xref: SCTID:362352005
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0010262 ! operculum of brain
[Term]
id: UBERON:0002948
name: superior occipital gyrus
synonym: "gyrus occipitalis primus" EXACT [FMA:61901]
xref: FMA:61901
xref: NIF_GrossAnatomy:birnlex_758
xref: SCTID:279182006
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0002021 ! occipital lobe
[Term]
id: UBERON:0002949
name: tectospinal tract
def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord[GO]." [Wikipedia:Tectospinal_tract]
subset: uberon_slim
synonym: "held's bundle" EXACT [FMA:72620]
synonym: "tectospinal pathway" EXACT [FMA:72620]
synonym: "tractus tectospinalis" RELATED LATIN [Wikipedia:Tectospinal_tract]
xref: BM:TSp
xref: FMA:72620
xref: http://upload.wikimedia.org/wikipedia/commons/b/be/Gray670.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray670.png/200px-Gray670.png
xref: NIF_GrossAnatomy:birnlex_759
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002950
name: regional part of midbrain
def: "A regional part of brain that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of midbrain" EXACT [OBOL:automatic]
synonym: "biological structure of brain of midbrain" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of midbrain" EXACT [OBOL:automatic]
synonym: "brain biological structure of midbrain" EXACT [OBOL:automatic]
synonym: "midbrain anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "midbrain biological structure of brain" EXACT [OBOL:automatic]
synonym: "midbrain brain anatomical structure" EXACT [OBOL:automatic]
synonym: "midbrain brain biological structure" EXACT [OBOL:automatic]
synonym: "midbrain neuraxis segment" EXACT [OBOL:automatic]
synonym: "midbrain regional part of brain" EXACT [OBOL:automatic]
synonym: "midbrain segment" EXACT [FMA:61997]
synonym: "midbrain segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of midbrain" EXACT [OBOL:automatic]
synonym: "regional part of brain of midbrain" EXACT [OBOL:automatic]
synonym: "segment of brain of midbrain" EXACT [OBOL:automatic]
synonym: "segment of midbrain" EXACT [NIF_GrossAnatomy:birnlex_763]
xref: FMA:61997
xref: NIF_GrossAnatomy:birnlex_763
xref: SCTID:119239004
is_a: UBERON:0002616 ! regional part of brain
relationship: part_of UBERON:0001891
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0002951
name: regional part of intermediate hypothalamic region
def: "A regional part of brain that is part of a intermediate hypothalamic region [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "biological structure of brain of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "biological structure of brain of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "brain biological structure of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "brain biological structure of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area biological structure of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area brain anatomical structure" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area brain biological structure" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area neuraxis segment" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area regional part of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area segment of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region biological structure of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region brain anatomical structure" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region brain biological structure" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region neuraxis segment" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region regional part of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region segment" EXACT [FMA:62310]
synonym: "intermediate hypothalamic region segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "neuraxis segment of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "regional part of brain of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "regional part of brain of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "segment of brain of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "segment of brain of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "segment of intermediate hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_767]
xref: FMA:62310
xref: NIF_GrossAnatomy:birnlex_767
is_a: UBERON:0003048 ! regional part of hypothalamus
relationship: part_of UBERON:0002555
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0002555 ! intermediate hypothalamic region
relationship: part_of UBERON:0002555 ! intermediate hypothalamic region
[Term]
id: UBERON:0002952
name: intermediate acoustic stria
synonym: "commissure of held" EXACT []
synonym: "intermediate acoustic stria (held)" EXACT [NIF_GrossAnatomy:birnlex_768]
synonym: "intermediate acoustic stria of held" EXACT []
xref: FMA:72497
xref: NIF_GrossAnatomy:birnlex_768
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0002953
name: lateral lemniscus
alt_id: UBERON:0003042
def: "The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]." [Wikipedia:Lateral_lemniscus]
subset: uberon_slim
synonym: "lateral fillet" EXACT [FMA:72502]
synonym: "lemniscus lateralis" RELATED LATIN [Wikipedia:Lateral_lemniscus]
xref: BM:Pons-LL
xref: FMA:72502
xref: http://upload.wikimedia.org/wikipedia/commons/4/44/Lateral_lemniscus.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Lateral_lemniscus.PNG/200px-Lateral_lemniscus.PNG
xref: NIF_GrossAnatomy:birnlex_976
xref: SCTID:362399003
is_a: UBERON:0003001 ! lemniscus
is_a: UBERON:0003544 ! brain white matter
[Term]
id: UBERON:0002954
name: dorsal hypothalamic area
xref: BM:Die-Hy-HDA
xref: FMA:62339
xref: NIF_GrossAnatomy:birnlex_777
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002955
name: rhomboidal nucleus
synonym: "nucleus commissuralis rhomboidalis" RELATED [BTO:0002458]
synonym: "nucleus rhomboidalis" RELATED [BTO:0002458]
synonym: "rhomboid nucleus" EXACT [FMA:62154]
synonym: "rhomboid thalamic nucleus" EXACT [FMA:62154]
xref: ABA:RH
xref: BTO:0002458
xref: FMA:62154
xref: NIF_GrossAnatomy:birnlex_778
property_value: "spatially_disjoint_from" UBERON:0001922
property_value: "spatially_disjoint_from" UBERON:0001923
property_value: "spatially_disjoint_from" UBERON:0001924
property_value: "spatially_disjoint_from" UBERON:0003036
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002956
name: granular layer of cerebellar cortex
def: "The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer." [GO:0021681]
synonym: "cerebellar granular layer" EXACT [GO:0021681]
synonym: "cerebellar granule cell layer" EXACT []
synonym: "cerebellar granule layer" EXACT []
synonym: "cerebellum granule cell layer" EXACT [MA:0000993]
synonym: "cerebellum granule layer" EXACT []
synonym: "granule cell layer of cerebellar cortex" EXACT [NIF_GrossAnatomy:birnlex_779]
xref: ABA:CBXgr
xref: BTO:0004425
xref: FMA:83140
xref: MA:0000993
xref: ncithesaurus:Granular_Layer_of_the_Cerebellum
xref: NIF_GrossAnatomy:birnlex_779
property_value: "spatially_disjoint_from" UBERON:0002979
is_a: UBERON:0004130 ! cerebellar layer
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0002957
name: caudal central oculomotor nucleus
synonym: "caudal central nucleus" EXACT [FMA:72426]
synonym: "caudal central nucleus of oculomotor nerve" EXACT [FMA:72426]
xref: FMA:72426
xref: NIF_GrossAnatomy:birnlex_780
xref: SCTID:369239004
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002958
name: medial lemniscus of pons
def: "A medial lemniscus that is part of a pons [Obol]." [OBOL:automatic]
synonym: "medial lemniscus of pons of varolius" EXACT [OBOL:automatic]
synonym: "pons medial lemniscus" EXACT [OBOL:automatic]
synonym: "pons of varolius medial lemniscus" EXACT [OBOL:automatic]
xref: FMA:72503
xref: NIF_GrossAnatomy:birnlex_781
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0003002 ! medial lemniscus
relationship: part_of UBERON:0000988
intersection_of: UBERON:0003002 ! medial lemniscus
intersection_of: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002959
name: subfascicular nucleus
xref: FMA:62155
xref: NIF_GrossAnatomy:birnlex_783
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002960
name: central oculomotor nucleus
synonym: "central nucleus of perlia" EXACT []
synonym: "nucleus of perlia" EXACT []
synonym: "spitzka's nucleus" EXACT [FMA:72425]
xref: FMA:72425
xref: NIF_GrossAnatomy:birnlex_786
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002961
name: archicortex
def: "A portion of the cerebral cortex that, with the paleocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals. Being part of the limbic system, it has functions related to emotions and formation of memory. Signals being sent from the limbic lobe to the hippocampal formations can go via the archicortex as an intermediate." [Wikipedia:Archicortex]
subset: uberon_slim
synonym: "archipallium" EXACT [FMA:62424]
xref: EHDAA2:0004496
xref: FMA:62424
xref: NIF_GrossAnatomy:birnlex_787
xref: SCTID:423918008
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0002962
name: adductor pollicis muscle
def: "In human anatomy, the adductor pollicis muscle is a muscle in the hand that functions to adduct the thumb. It has two heads: transverse and oblique. It is a fleshy, flat, triangular, and fan-shaped muscle deep in the thenar compartment beneath the long flexor tendons and the lumbrical muscles at the center of the palm. It overlies the metacarpal bones and the interosseous muscles[WP]." [Wikipedia:Adductor_pollicis_muscle]
synonym: "adductor pollicis" EXACT [Wikipedia:Adductor_pollicis_muscle]
synonym: "musculus adductor pollicis" RELATED LATIN [Wikipedia:Adductor_pollicis_muscle]
xref: FMA:37380
xref: http://upload.wikimedia.org/wikipedia/commons/d/df/Musculusadductorpollicis.png
xref: SCTID:181649004
is_a: UBERON:0001500 ! muscle of hand
is_a: UBERON:0011145 ! adductor muscle
relationship: has_muscle_antagonist UBERON:0001527 {source="dbpedia"} ! abductor pollicis longus
relationship: has_muscle_antagonist UBERON:0008465 {source="dbpedia"} ! abductor pollicis brevis muscle
relationship: has_muscle_insertion UBERON:0004445 {source="dbpedia", notes="medial side of the base of the proximal phalanx of the thumb and the ulnar sesamoid"} ! proximal epiphysis of proximal phalanx of thumb
relationship: has_muscle_insertion UBERON:0007993 {source="dbpedia", notes="medial side of the base of the proximal phalanx of the thumb and the ulnar sesamoid"} ! ulnar sesamoid bone
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0002963
name: caudal pontine reticular nucleus
def: "The caudal pontine reticular nucleus is composed of gigantocellular neurons. In rabbits and cats it is exclusively giant cells, however in humans there are normally sized cells as well. The pontis caudalis is rostral to the gigantocellular nucleus and is located in the caudal pons, as the name would indicate. The pontis caudalis has been known to mediate head movement, in concert with the nucleus gigantocellularis and the superior colliculus. The neurons in the dorsal half of this nuclei fire rhythmically during mastication, and in an anesthetized animal it is possible to induce mastication via electrical stimulation of the PC or adjacent areas of the gigantocellular nucleus. The pontis caudalis is also thought to play a role in the grinding of teeth during sleep. [WP,unvetted]." [Wikipedia:Caudal_pontine_reticular_nucleus]
subset: uberon_slim
synonym: "nucleus reticularis pontis caudalis" RELATED LATIN [Wikipedia:Caudal_pontine_reticular_nucleus]
synonym: "pontine reticular nucleus, caudal part" EXACT [FMA:72469]
xref: ABA:PRNc
xref: FMA:72469
xref: NIF_GrossAnatomy:birnlex_792
property_value: "spatially_disjoint_from" UBERON:0002143
property_value: "spatially_disjoint_from" UBERON:0002147
property_value: "spatially_disjoint_from" UBERON:0002149
property_value: "spatially_disjoint_from" UBERON:0002151
property_value: "spatially_disjoint_from" UBERON:0002633
property_value: "spatially_disjoint_from" UBERON:0002682
property_value: "spatially_disjoint_from" UBERON:0002968
property_value: "spatially_disjoint_from" UBERON:0003011
property_value: "spatially_disjoint_from" UBERON:0007632
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007413 {source="FMA"} ! nucleus of pontine reticular formation
[Term]
id: UBERON:0002964
name: dorsal oculomotor nucleus
synonym: "dorsal oculomotor cell column" EXACT [FMA:62442]
xref: FMA:62442
xref: NIF_GrossAnatomy:birnlex_793
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002965
name: rostral intralaminar nuclei
synonym: "nuclei intralaminares rostrales" EXACT [NIF_GrossAnatomy:birnlex_794]
synonym: "rostral intralaminar nuclear group" EXACT [FMA:62164]
synonym: "rostral intralaminar nuclei" EXACT [FMA:62164]
xref: FMA:62164
xref: NIF_GrossAnatomy:birnlex_794
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002966
name: regional part of midbrain tectum
def: "A regional part of brain that is part of a midbrain tectum [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of midbrain tectum" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of tectum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of midbrain tectum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of tectum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of midbrain tectum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of tectum" EXACT [OBOL:automatic]
synonym: "brain biological structure of midbrain tectum" EXACT [OBOL:automatic]
synonym: "brain biological structure of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "brain biological structure of tectum" EXACT [OBOL:automatic]
synonym: "midbrain tectum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "midbrain tectum biological structure of brain" EXACT [OBOL:automatic]
synonym: "midbrain tectum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "midbrain tectum brain biological structure" EXACT [OBOL:automatic]
synonym: "midbrain tectum neuraxis segment" EXACT [OBOL:automatic]
synonym: "midbrain tectum regional part of brain" EXACT [OBOL:automatic]
synonym: "midbrain tectum segment" EXACT [FMA:62398]
synonym: "midbrain tectum segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of midbrain tectum" EXACT [OBOL:automatic]
synonym: "neuraxis segment of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "neuraxis segment of tectum" EXACT [OBOL:automatic]
synonym: "neuraxis tectum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "neuraxis tectum biological structure of brain" EXACT [OBOL:automatic]
synonym: "neuraxis tectum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "neuraxis tectum brain biological structure" EXACT [OBOL:automatic]
synonym: "neuraxis tectum neuraxis segment" EXACT [OBOL:automatic]
synonym: "neuraxis tectum regional part of brain" EXACT [OBOL:automatic]
synonym: "neuraxis tectum segment of brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of midbrain tectum" EXACT [OBOL:automatic]
synonym: "regional part of brain of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "regional part of brain of tectum" EXACT [OBOL:automatic]
synonym: "segment of brain of midbrain tectum" EXACT [OBOL:automatic]
synonym: "segment of brain of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "segment of brain of tectum" EXACT [OBOL:automatic]
synonym: "segment of midbrain tectum" EXACT [NIF_GrossAnatomy:birnlex_795]
synonym: "tectum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "tectum biological structure of brain" EXACT [OBOL:automatic]
synonym: "tectum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "tectum brain biological structure" EXACT [OBOL:automatic]
synonym: "tectum neuraxis segment" EXACT [OBOL:automatic]
synonym: "tectum regional part of brain" EXACT [OBOL:automatic]
synonym: "tectum segment of brain" EXACT [OBOL:automatic]
xref: FMA:62398
xref: NIF_GrossAnatomy:birnlex_795
is_a: UBERON:0002950 ! regional part of midbrain
relationship: part_of UBERON:0002314
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0002314 ! midbrain tectum
relationship: part_of UBERON:0002314 ! midbrain tectum
[Term]
id: UBERON:0002967
name: cingulate gyrus
def: "A gyrus in the medial part of the brain. It partially wraps around the corpus callosum and is limited above by the cingulate sulcus. The cortical part of the cingulate gyrus is referred to as cingulate cortex.[Wikipedia]. The cingulate gyrus receives inputs from the anterior nucleus of the thalamus and the neocortex, as well as from somatosensory areas of the cerebral cortex. It projects to the entorhinal cortex via the cingulum. It functions as an integral part of the limbic system, which is involved with emotion formation and processing, learning, and memory. Also, executive control needed to suppress inappropriate unconscious priming is known to involve the anterior cingulate gyrus. It is also involved in respiratory control." [Wikipedia:Cingulate_gyrus]
subset: uberon_slim
synonym: "cingulate area" EXACT [FMA:62434]
synonym: "cingulate region" EXACT [FMA:62434]
synonym: "falciform lobe" EXACT [FMA:62434]
synonym: "upper limbic gyrus" EXACT [FMA:62434]
xref: BM:Tel-CG
xref: BTO:0003976
xref: FMA:62434
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray727_cingulate_gyrus.png/200px-Gray727_cingulate_gyrus.png
xref: ncithesaurus:Cingulate_Gyrus
xref: NIF_GrossAnatomy:birnlex_798
xref: SCTID:279208003
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0000349 ! limbic system
[Term]
id: UBERON:0002968
name: central gray substance of pons
synonym: "central gray of pons" EXACT [FMA:72470]
synonym: "pontine central gray" EXACT [FMA:72470]
xref: ABA:PCG
xref: FMA:72470
xref: NIF_GrossAnatomy:birnlex_799
property_value: "spatially_disjoint_from" UBERON:0002143
property_value: "spatially_disjoint_from" UBERON:0002147
property_value: "spatially_disjoint_from" UBERON:0002149
property_value: "spatially_disjoint_from" UBERON:0002151
property_value: "spatially_disjoint_from" UBERON:0002633
property_value: "spatially_disjoint_from" UBERON:0002682
property_value: "spatially_disjoint_from" UBERON:0002963
property_value: "spatially_disjoint_from" UBERON:0003011
property_value: "spatially_disjoint_from" UBERON:0007632
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002969
name: inferior temporal sulcus
synonym: "inferior temporal sulcus-1" EXACT [FMA:83784]
synonym: "middle temporal sulcus (szikla)" EXACT []
synonym: "second temporal sulcus" EXACT [FMA:83784]
synonym: "sulcus t2" EXACT [FMA:83784]
xref: BM:Tel-Cx-ITS
xref: FMA:83784
xref: ncithesaurus:Inferior_Temporal_Sulcus
xref: NIF_GrossAnatomy:birnlex_800
xref: SCTID:279346007
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002970
name: intermediate oculomotor nucleus
synonym: "intermediate oculomotor cell column" EXACT [FMA:72420]
xref: FMA:72420
xref: NIF_GrossAnatomy:birnlex_803
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002971
name: periolivary nucleus
synonym: "dorsal periolivary nucleus" EXACT [FMA:72475]
synonym: "nuclei periolivares" EXACT [FMA:72475, FMA:TA]
synonym: "pperi-olivary nuclei" EXACT [FMA:72475]
xref: FMA:72475
xref: MA:0002757
xref: NIF_GrossAnatomy:birnlex_804
is_a: UBERON:0002680 ! regional part of metencephalon
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0002972
name: centromedian nucleus
def: "In the anatomy of the brain, the centromedian nucleus, also known as the centrum medianum, (CM or Cm-Pf) is a part of the intralaminar nucleus (ILN) of the thalamus. There are two centromedian nuclei arranged bilaterally. It contains about 2000 neurons per cubic millimetre and has a volume of about 310 cubic millimetres with 664,000 neurons in total. [WP,unvetted]." [Wikipedia:Centromedian_nucleus]
subset: uberon_slim
synonym: "central magnocellular nucleus of thalamus" EXACT [FMA:62165]
synonym: "central nucleus-1" EXACT [FMA:62165]
synonym: "centre median nucleus" EXACT [FMA:62165]
synonym: "centromedian nucleus of thalamus" EXACT [FMA:62165]
synonym: "centromedian thalamic nucleus" EXACT [FMA:62165]
synonym: "centrum medianum" EXACT [NIF_GrossAnatomy:birnlex_805]
synonym: "centrum medianum thalami" EXACT [NIF_GrossAnatomy:birnlex_805]
synonym: "noyau centre median of luys" EXACT []
synonym: "nucleus centralis centralis" EXACT [NIF_GrossAnatomy:birnlex_805]
synonym: "nucleus centralis thalami (hassler)" EXACT [NIF_GrossAnatomy:birnlex_805]
synonym: "nucleus centri mediani thalami" EXACT [NIF_GrossAnatomy:birnlex_805]
synonym: "nucleus centromedianus" EXACT [NIF_GrossAnatomy:birnlex_805]
synonym: "nucleus centromedianus thalami" EXACT [NIF_GrossAnatomy:birnlex_805]
synonym: "nucleus centromedianus thalami" RELATED LATIN [Wikipedia:Centromedian_nucleus]
synonym: "nucleus centrum medianum" EXACT [NIF_GrossAnatomy:birnlex_805]
xref: EV:0100215
xref: FMA:62165
xref: ncithesaurus:Centromedian_Nucleus_of_the_Thalamus
xref: NIF_GrossAnatomy:birnlex_805
xref: SCTID:279162007
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0002733 {source="FMA"} ! intralaminar nuclear group
[Term]
id: UBERON:0002973
name: parahippocampal gyrus
def: "a grey matter cortical region of the brain that surrounds the hippocampus. This region plays an important role in memory encoding and retrieval. The anterior part of the gyrus includes the perirhinal and entorhinal cortices. The term parahippocampal cortex is used to refer to an area that encompasses both the posterior portion of the parahippocampal gyrus and the medial portion of the fusiform gyrus.[Wikipedia]." [Wikipedia:Parahippocampal_gyrus]
subset: uberon_slim
synonym: "gyrus parahippocampalis" RELATED LATIN [Wikipedia:Parahippocampal_gyrus]
synonym: "hippocampal gyrus" EXACT [FMA:61918]
xref: BTO:0004380
xref: EV:0100181
xref: FMA:61918
xref: GAID:634
xref: http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG
xref: MESH:A.08.186.211.577.710
xref: ncithesaurus:Parahippocampal_Gyrus
xref: NIF_GrossAnatomy:birnlex_807
xref: SCTID:279205000
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0000349 ! limbic system
relationship: part_of UBERON:0001871 ! temporal lobe
relationship: surrounds UBERON:0001954 {source="Wikipedia"} ! Ammon's horn
[Term]
id: UBERON:0002974
name: molecular layer of cerebellar cortex
def: "The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells" [GO:0021679]
comment: Taxon notes: Compare with ZFA:0000636 - cerebellar crest, which is also composed of parallel fibers but located in a more restricted nucleus within the cerebellum
synonym: "cerebellar molecular layer" EXACT [GO:0021679]
synonym: "cerebellum molecular cell layer" EXACT []
synonym: "cerebellum molecular layer" EXACT []
xref: FMA:83897
xref: MA:0000996
xref: ncithesaurus:Molecular_Layer_of_the_Cerebellum
xref: NIF_GrossAnatomy:birnlex_810
xref: SCTID:369045002
is_a: UBERON:0004130 ! cerebellar layer
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0002975
name: medial oculomotor nucleus
synonym: "medial oculomotor cell column" EXACT [FMA:72421]
xref: FMA:72421
xref: NIF_GrossAnatomy:birnlex_813
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002976
name: preolivary nucleus
synonym: "preolivary nuclei" EXACT [FMA:72474]
xref: FMA:72474
xref: NIF_GrossAnatomy:birnlex_814
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007247 ! superior olivary nucleus
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0002977
name: triangular septal nucleus
synonym: "nucleus triangularis septi" EXACT [FMA:61880, FMA:TA]
synonym: "triangular nucleus of septum" EXACT [FMA:61880]
synonym: "triangular nucleus septum (cajal)" EXACT [NIF_GrossAnatomy:birnlex_816]
xref: ABA:TRS
xref: BM:Tel-Spt-STN
xref: FMA:61880
xref: NIF_GrossAnatomy:birnlex_816
property_value: "spatially_disjoint_from" UBERON:0007629
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002978
name: oral part of ventral lateral nucleus
synonym: "nucleus lateralis oralis situs principalis" EXACT [NIF_GrossAnatomy:birnlex_817]
synonym: "nucleus ventralis lateralis, pars oralis" EXACT [NIF_GrossAnatomy:birnlex_817]
synonym: "nucleus ventrooralis externus, anterior part (van buren)" EXACT [NIF_GrossAnatomy:birnlex_817]
synonym: "subnucleus rostralis" EXACT [NIF_GrossAnatomy:birnlex_817]
synonym: "ventral anterior nucleus, pars densicellularis" EXACT [FMA:62193]
synonym: "ventral lateral anterior nucleus" EXACT [FMA:62193]
synonym: "ventral lateral nucleus, oral part" EXACT [FMA:62193]
synonym: "ventral lateral thalamic nucleus, oral part" EXACT [FMA:62193]
xref: FMA:62193
xref: NIF_GrossAnatomy:birnlex_817
is_a: UBERON:0003528 ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002979
name: Purkinje cell layer of cerebellar cortex
def: "The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells." [GO:0021680]
synonym: "cerebellar Purkinje cell layer" EXACT [FMA:83896, GO:0021694]
synonym: "cerebellum Purkinje cell layer" EXACT []
synonym: "cerebellum Purkinje layer" EXACT []
synonym: "Purkinje cell layer" EXACT [FMA:83896]
xref: ABA:CBXpu
xref: BTO:0004909
xref: FMA:83896
xref: MA:0000997
xref: ncithesaurus:Purkinje_Cell_Layer_of_the_Cerebellum
xref: NIF_GrossAnatomy:birnlex_818
xref: SCTID:369046001
property_value: "spatially_disjoint_from" UBERON:0002956
is_a: UBERON:0004130 ! cerebellar layer
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0002980
name: opercular part of inferior frontal gyrus
synonym: "opercular portion of inferior frontal gyrus" EXACT [FMA:61981]
synonym: "pars opercularis gyri frontalis inferioris" EXACT [NIF_GrossAnatomy:birnlex_823]
synonym: "posterior part of inferior frontal gyrus" EXACT [FMA:61981]
xref: FMA:61981
xref: NIF_GrossAnatomy:birnlex_823
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002981
name: pulvinar nucleus
def: "The pulvinar is the caudal-most nucleus of the thalamus. The pulvinar is usually grouped as one of the lateral thalamic nuclei. [WP,unvetted]." [Wikipedia:Pulvinar_nuclei]
subset: uberon_slim
synonym: "nuclei pulvinares" EXACT [FMA:62178, FMA:TA]
synonym: "pulvinar" EXACT [FMA:62178]
synonym: "pulvinar nuclei" EXACT [FMA:62178]
synonym: "pulvinar thalami" EXACT [NIF_GrossAnatomy:birnlex_824]
xref: BM:Die-Th-Pl
xref: BTO:0004352
xref: EV:0100213
xref: FMA:62178
xref: GAID:662
xref: http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png
xref: MESH:A.08.186.211.730.385.826.701.485.600
xref: NIF_GrossAnatomy:birnlex_824
xref: SCTID:279157006
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002982
name: inferior pulvinar nucleus
synonym: "nucleus pulvinaris inferior" EXACT [NIF_GrossAnatomy:birnlex_830]
synonym: "nucleus pulvinaris inferior thalami" EXACT [NIF_GrossAnatomy:birnlex_830]
synonym: "nucleus pulvinaris thalami, pars inferior" EXACT [NIF_GrossAnatomy:birnlex_830]
xref: BM:Die-Th-Pl-Pli
xref: FMA:62183
xref: NIF_GrossAnatomy:birnlex_830
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002983
name: lateral posterior nucleus
synonym: "lateral posterior nucleus of thalamus" EXACT [FMA:62177]
synonym: "lateral posterior nucleus of the thalamus" EXACT [NIF_GrossAnatomy:birnlex_835]
synonym: "lateral posterior thalamic nucleus" EXACT [FMA:62177]
synonym: "laterodorsal nucleus, caudal part" EXACT [FMA:62177]
synonym: "nucleus dorso-caudalis" EXACT [NIF_GrossAnatomy:birnlex_835]
synonym: "nucleus dorsocaudalis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_835]
synonym: "nucleus lateralis posterior" EXACT [NIF_GrossAnatomy:birnlex_835]
synonym: "nucleus lateralis posterior thalami" EXACT [NIF_GrossAnatomy:birnlex_835]
synonym: "nucleus lateralis thalami posterior" EXACT [NIF_GrossAnatomy:birnlex_835]
synonym: "posterior lateral nucleus of thalamus" EXACT [FMA:62177]
xref: ABA:LP
xref: BM:Die-Th-LP
xref: BTO:0004351
xref: EV:0100212
xref: FMA:62177
xref: ncithesaurus:Lateral_Posterior_Nucleus_of_the_Thalamus
xref: NIF_GrossAnatomy:birnlex_835
xref: SCTID:279155003
property_value: "spatially_disjoint_from" UBERON:0002709
property_value: "spatially_disjoint_from" UBERON:0003033
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002984
name: lateral dorsal nucleus
synonym: "lateral dorsal nucleus of thalamus" EXACT [FMA:62176]
synonym: "lateral dorsal thalamic nucleus" EXACT [FMA:62176]
synonym: "laterodorsal nucleus nucleus of thalamus" EXACT [NIF_GrossAnatomy:birnlex_838]
synonym: "laterodorsal nucleus thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_838]
synonym: "laterodorsal nucleus, superficial part" EXACT [FMA:62176]
synonym: "laterodorsal thalamic nucleus" EXACT [FMA:62176]
synonym: "nucleus dorsalis lateralis thalami" EXACT [FMA:62176, FMA:TA]
synonym: "nucleus dorsalis superficialis (hassler)" EXACT [NIF_GrossAnatomy:birnlex_838]
synonym: "nucleus dorsolateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_838]
synonym: "nucleus lateralis dorsalis" EXACT [NIF_GrossAnatomy:birnlex_838]
synonym: "nucleus lateralis dorsalis of thalamus" EXACT [NIF_GrossAnatomy:birnlex_838]
synonym: "nucleus lateralis dorsalis thalami" EXACT [NIF_GrossAnatomy:birnlex_838]
synonym: "nucleus lateralis thalami dorsalis" EXACT [NIF_GrossAnatomy:birnlex_838]
xref: ABA:LD
xref: BM:Die-Th-LD
xref: BTO:0004349
xref: BTO:0004350
xref: EV:0100211
xref: FMA:62176
xref: NIF_GrossAnatomy:birnlex_838
xref: SCTID:279154004
property_value: "spatially_disjoint_from" UBERON:0002679
property_value: "spatially_disjoint_from" UBERON:0002681
property_value: "spatially_disjoint_from" UBERON:0002685
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002985
name: ventral nucleus of medial geniculate body
synonym: "medial geniculate complex, ventral part" EXACT [FMA:62217]
synonym: "medial geniculate nucleus, ventral part" EXACT [FMA:62217]
synonym: "medial nucleus of medial geniculate complex" EXACT [NIF_GrossAnatomy:birnlex_845]
synonym: "nucleus corporis geniculati medialis, pars ventralis" EXACT [NIF_GrossAnatomy:birnlex_845]
synonym: "nucleus geniculatus medialis fasciculosus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_845]
synonym: "nucleus geniculatus medialis pars ventralis" EXACT [NIF_GrossAnatomy:birnlex_845]
synonym: "nucleus ventralis corporis geniculati medialis" EXACT [FMA:62217, FMA:TA]
synonym: "ventral nucleus of medial geniculate complex" EXACT [FMA:62217]
synonym: "ventral principal nucleus of medial geniculate body" EXACT [FMA:62217]
xref: ABA:MGv
xref: BM:Die-Th-MG-MGv
xref: BTO:0002671
xref: FMA:62217
xref: NIF_GrossAnatomy:birnlex_845
property_value: "spatially_disjoint_from" UBERON:0002758
property_value: "spatially_disjoint_from" UBERON:0002759
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0001927 ! medial geniculate body
[Term]
id: UBERON:0002986
name: neurofilament
def: "." [Wikipedia:Neurofilament]
subset: uberon_slim
synonym: "neuronal intermediate filament" EXACT [FMA:63859]
xref: FMA:63859
xref: GO:0005883
xref: ncithesaurus:Neurofilament
xref: NIF_GrossAnatomy:birnlex_846
xref: NIF_Subcellular:sao1316272517
is_a: UBERON:0003000 ! intermediate filament
[Term]
id: UBERON:0002987
name: anterior spinocerebellar tract
def: "The ventral spinocerebellar tract conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the dorsal spinocerebellar tract. Both these tracts involve two neurons and end up on the same side of the body. The ventral tract (under L2/L3) gets its proprioceptive/fine touch/vibration information from a first order neuron, with its cell body in a dorsal ganglion. The axon runs via the fila radicularia to the dorsal horn of the grey matter. There it makes a synapse with the dendrites of two neurons: they send their axons bilaterally to the ventral border of the lateral funiculi. The ventral spinocerebellar tract then enters the cerebellum via the superior cerebellar peduncle. This is in contrast with the dorsal spinocerebellar tract (C8 - L2/L3), which only has 1 unilateral axon that has its cell body in the Clarke's nuclei (only at the level of C8 - L2/L3). The fibers of the ventral spinocerebellar tract then eventually enter the cerebellum via the superior cerebellar peduncle. This is one of the few afferent tracts through the superior cerebellar peduncle. Originates from ventral horn at lumbosacral spinal levels. Axons first cross midline in the spinal cord and run in the ventral border of the lateral funiculi. These axons ascend up to the pons where they join the superior cerebellar peduncle to enter the cerebellum. Once in the deep white matter of the cerebellum, the axons recross the midline, give off collaterals to the globose and emboliform nuclei, and terminate in the cortex of the anterior lobe and vermis of the posterior lobe. [WP,unvetted]." [Wikipedia:Ventral_spinocerebellar_tract]
subset: uberon_slim
synonym: "gower's tract" EXACT [NIF_GrossAnatomy:birnlex_848]
synonym: "gowers' tract" EXACT [FMA:72642]
synonym: "ventral spinocerebellar tract" EXACT [FMA:72642]
xref: FMA:72642
xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png
xref: NIF_GrossAnatomy:birnlex_848
xref: SCTID:369285001
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 ! medulla oblongata
relationship: part_of UBERON:0005413 ! spinocerebellar tract
[Term]
id: UBERON:0002988
name: first dorsal interosseous of hand
synonym: "abductor indicis" EXACT [FMA:37424]
xref: FMA:37424
xref: SCTID:245003002
is_a: UBERON:0001503 {source="FMA"} ! dorsal interosseous of hand
[Term]
id: UBERON:0002989
name: anconeus muscle
def: "small muscle on the posterior aspect of the elbow joint." [Wikipedia:Anconeus_muscle]
comment: Some consider anconeus to be a continuation of the triceps brachii muscle. Some sources consider it to be part of the posterior compartment of the arm, while others consider it part of the posterior compartment of the forearm.
synonym: "anconeus" EXACT [Wikipedia:Anconeus_muscle]
synonym: "m. anconeus" EXACT [AAO:0010714]
synonym: "musculus anconeus" RELATED LATIN [Wikipedia:Anconeus_muscle]
xref: AAO:0010714
xref: FMA:37704
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Gray1232.png
xref: SCTID:244993003
is_a: UBERON:0004255 {source="FMA"} ! forelimb stylopod muscle
relationship: has_muscle_insertion UBERON:0006810 {source="dbpedia", notes="lateral surface of the olecranon process and the superior part of the posterior ulna distally"} ! olecranon
relationship: has_muscle_nerve UBERON:0001492 {source="dbpedia"} ! radial nerve
relationship: has_muscle_origin UBERON:0006807 {source="dbpedia", notes="lateral epicondyle of the humerus proximally"} ! ectepicondyle of humerus
[Term]
id: UBERON:0002990
name: mammillothalamic tract of hypothalamus
xref: FMA:62059
xref: NIF_GrossAnatomy:birnlex_855
xref: SCTID:369139008
is_a: UBERON:0003931 ! diencephalic white matter
relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region
relationship: part_of UBERON:0006695 ! mammillary axonal complex
[Term]
id: UBERON:0002991
name: supramammillary commissure
synonym: "commissure of forel" EXACT []
synonym: "commissure y" EXACT [FMA:62056]
synonym: "postmammillary decussation" EXACT [FMA:62056]
synonym: "supramammillary decussation" EXACT [FMA:62056]
xref: FMA:62056
xref: NIF_GrossAnatomy:birnlex_859
xref: SCTID:369148003
is_a: UBERON:0011590 {source="FMA"} ! commissure of diencephalon
relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region
[Term]
id: UBERON:0002992
name: paratenial nucleus
def: "One of the median nuclei of the thalamus, situated ventral and medial to the stria medullaris." [BTO:0002457]
synonym: "nucleus parataenialis" EXACT [FMA:62151, FMA:TA]
synonym: "nucleus parataenialis" EXACT [BTO:0002457]
synonym: "nucleus parataenialis thalami" RELATED [BTO:0002457]
synonym: "parataenial nucleus" EXACT [FMA:62151]
synonym: "paratenial nucleus of thalamus" RELATED [BTO:0002457]
synonym: "paratenial thalamic nucleus" EXACT [FMA:62151]
xref: ABA:PT
xref: BTO:0002457
xref: FMA:62151
xref: NIF_GrossAnatomy:birnlex_860
xref: SCTID:422800004
property_value: "spatially_disjoint_from" UBERON:0001920
is_a: UBERON:0007692 ! nucleus of thalamus
relationship: part_of UBERON:0002705 {source="FMA", source="NIF", source="ABA"} ! midline nuclear group
[Term]
id: UBERON:0002993
name: inferior central nucleus
comment: todo - compare with UBERON:0002881
subset: uberon_slim
synonym: "inferior central nucleus (of roller)" EXACT [FMA:72466]
synonym: "inferior central nucleus of raphe" EXACT [FMA:72466]
synonym: "inferior central tegmental nucleus" EXACT [FMA:72466]
xref: FMA:72466
xref: NIF_GrossAnatomy:birnlex_861
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007413 {source="FMA"} ! nucleus of pontine reticular formation
relationship: part_of UBERON:0002573 {source="FMA"} ! pontine reticular formation
[Term]
id: UBERON:0002994
name: nucleus of pretectal area
synonym: "pretectal area nucleus" EXACT [FMA:72401]
xref: FMA:72401
xref: NIF_GrossAnatomy:birnlex_864
is_a: UBERON:0003047 ! regional part of pretectal region
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002995
name: substantia nigra pars lateralis
def: "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)." [NIF_GrossAnatomy:birnlex_866]
comment: disjointness violation - relationship: part_of UBERON:0001966 {source="NIF"}
synonym: "lateral part of substantia nigra" EXACT [FMA:76844]
synonym: "pars lateralis" EXACT [NIF_GrossAnatomy:birnlex_866]
synonym: "Substantia nigra, lateral part" EXACT [ABA:SNI]
xref: ABA:SNI
xref: FMA:76844
xref: MA:0001065
xref: NIF_GrossAnatomy:birnlex_866
property_value: "spatially_disjoint_from" UBERON:0001715
property_value: "spatially_disjoint_from" UBERON:0001944
property_value: "spatially_disjoint_from" UBERON:0001947
property_value: "spatially_disjoint_from" UBERON:0001966
property_value: "spatially_disjoint_from" UBERON:0002141
property_value: "spatially_disjoint_from" UBERON:0002438
property_value: "spatially_disjoint_from" UBERON:0002691
property_value: "spatially_disjoint_from" UBERON:0002696
property_value: "spatially_disjoint_from" UBERON:0002722
property_value: "spatially_disjoint_from" UBERON:0003040
is_a: UBERON:0002791 ! regional part of telencephalon
is_a: UBERON:0002950 ! regional part of midbrain
relationship: part_of UBERON:0002038 {source="MA"} ! substantia nigra
[Term]
id: UBERON:0002996
name: nucleus of optic tract
synonym: "large-celled nucleus of optic tract" EXACT [FMA:72403]
synonym: "lentiform nucleus of pretectal area" EXACT [FMA:72403]
synonym: "nucleus of the optic tract" EXACT [NIF_GrossAnatomy:birnlex_868]
synonym: "optic tract nucleus" EXACT [FMA:72403]
xref: ABA:NOT
xref: FMA:72403
xref: NIF_GrossAnatomy:birnlex_868
property_value: "spatially_disjoint_from" UBERON:0002565
property_value: "spatially_disjoint_from" UBERON:0002711
property_value: "spatially_disjoint_from" UBERON:0006848
is_a: UBERON:0003047 ! regional part of pretectal region
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002997
name: nucleus of medial eminence
synonym: "medial eminence nucleus" EXACT [FMA:72467]
synonym: "nucleus of eminentia teres" EXACT [FMA:72467]
xref: FMA:72467
xref: NIF_GrossAnatomy:birnlex_870
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0002998
name: inferior frontal gyrus
def: "The inferior frontal gyrus is a gyrus of the frontal lobe of the human brain. Its superior border is the inferior frontal sulcus, its inferior border the lateral fissure, and its posterior border is the inferior precentral sulcus. Above it is the middle frontal gyrus, behind it the precentral gyrus. [WP,unvetted]." [Wikipedia:Inferior_frontal_gyrus]
comment: ncit has two classes, but these are exact synonyms in FMA
subset: uberon_slim
synonym: "gyrus frontalis inferior" RELATED LATIN [Wikipedia:Inferior_frontal_gyrus]
synonym: "inferior frontal convolution" EXACT [FMA:61860]
xref: BTO:0004835
xref: FMA:61860
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Inferior_frontal_gyrus.png
xref: ncithesaurus:Inferior_Frontal_Convolution
xref: ncithesaurus:Inferior_Frontal_Gyrus
xref: NIF_GrossAnatomy:birnlex_873
xref: SCTID:362333004
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001870 ! frontal cortex
[Term]
id: UBERON:0002999
name: oral pontine reticular nucleus
def: "The oral pontine reticular nucleus is delineated from its caudal brother, with which it shares its first three names. This nucleus tapers into the lower mesencephalic reticular formation and contains sporadic giant cells. Different populations of the pontis oralis have displayed discharge patterns which coordinate with phasic movements to and from paradoxical sleep. From this information it has been implied that the n.r. pontis oralis is involved in the mediation of changing to and from REM sleep. [WP,unvetted]." [Wikipedia:Oral_pontine_reticular_nucleus]
subset: uberon_slim
synonym: "nucleus reticularis pontis oralis" RELATED LATIN [Wikipedia:Oral_pontine_reticular_nucleus]
synonym: "pontine reticular nucleus, rostral part" EXACT [FMA:72468]
xref: ABA:PRNv
xref: FMA:72468
xref: NIF_GrossAnatomy:birnlex_875
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007413 {source="FMA"} ! nucleus of pontine reticular formation
relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum
[Term]
id: UBERON:0003000
name: intermediate filament
def: "." [Wikipedia:Intermediate_filament]
subset: uberon_slim
xref: FMA:63851
xref: GAID:1079
xref: GO:0005882
xref: MESH:A.11.284.195.190.750.410
xref: ncithesaurus:Intermediate_Filament
xref: NIF_GrossAnatomy:birnlex_879
xref: NIF_Subcellular:sao952483289
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0003001
name: lemniscus
def: "A bundle or band of sensory nerve fibers. ribbon, from Greek lemniskos." [NIF_GrossAnatomy:birnlex_881, Wikipedia:Lemniscus_(anatomy)]
subset: uberon_slim
xref: FMA:76742
xref: NIF_GrossAnatomy:birnlex_881
is_a: UBERON:0002616 ! regional part of brain
[Term]
id: UBERON:0003002
name: medial lemniscus
def: "The medial lemniscus, also known as Reil's band or Reil's ribbon, is a pathway in the brainstem that carries sensory information from the gracile and cuneate nuclei to the thalamus. [WP,unvetted]." [Wikipedia:Medial_lemniscus]
subset: uberon_slim
synonym: "lemniscus medialis" RELATED LATIN [Wikipedia:Medial_lemniscus]
xref: BM:LM
xref: FMA:83675
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Gray759.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray759.png/200px-Gray759.png
xref: NIF_GrossAnatomy:birnlex_887
xref: SCTID:362398006
is_a: UBERON:0003001 ! lemniscus
is_a: UBERON:0003544 ! brain white matter
[Term]
id: UBERON:0003003
name: microfilament
def: "." [Wikipedia:Microfilament]
subset: uberon_slim
synonym: "actin filament" EXACT [FMA:63850]
synonym: "microfilament" EXACT [FMA:63850]
synonym: "microfilamentum" EXACT [FMA:63850]
xref: FMA:63850
xref: GAID:1080
xref: GO:0005884
xref: MESH:A.11.284.195.190.750.510
xref: ncithesaurus:Actin_Filament
xref: NIF_GrossAnatomy:birnlex_888
xref: NIF_Subcellular:sao2006047981
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0003004
name: median raphe nucleus
def: "The median raphe nucleus (or superior central nucleus) is composed of polygonal, fusiform and pyriform neurons and exists rostral to the nucleus raphe pontis. One trait of the MRN is its inhibition by lysergic acid diethylamide and psilocin, two serotonin antagonist hallucinogens. The inactivation of the nucleus centralis superior via LSD produces a dose dependent inactivation in the MRN, but not in the raphe pallidus[WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3248146&group_id=36855, Wikipedia:Median_raphe_nucleus]
comment: TODO: The term medial raphe nucleus refers to a composite structure that consists of the superior central nucleus and the inferior central nucleus of the pontine reticular formation ( Carpenter-1983 )[http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=h&ID=1391]
subset: uberon_slim
synonym: "cell group b8" EXACT []
synonym: "medial raphe nucleus" EXACT []
synonym: "median nucleus of the raphe" EXACT [FMA:72465]
synonym: "MRN" EXACT []
synonym: "nucleus raphes medianus" EXACT [FMA:72465, FMA:TA]
synonym: "nucleus raphes medianus, nucleus centralis superior" RELATED LATIN [Wikipedia:Median_raphe_nucleus]
synonym: "superior central nucleus" EXACT [FMA:72465]
synonym: "superior central nucleus raphe" EXACT [FMA:72465]
synonym: "superior central tegmental nucleus" EXACT [FMA:72465]
xref: ABA:CS
xref: BM:MR
xref: FMA:72465
xref: NIF_GrossAnatomy:birnlex_889
property_value: "spatially_disjoint_from" UBERON:0002047
property_value: "spatially_disjoint_from" UBERON:0002148
property_value: "spatially_disjoint_from" UBERON:0002267
property_value: "spatially_disjoint_from" UBERON:0002587
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007415 ! nucleus of midbrain reticular formation
relationship: part_of UBERON:0002639 {source="Wikipedia"} ! midbrain reticular formation
relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei
[Term]
id: UBERON:0003005
name: dorsal longitudinal fasciculus of midbrain
def: "A dorsal longitudinal fasciculus that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "bundle of Schutz of midbrain" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of midbrain" EXACT [OBOL:automatic]
synonym: "midbrain bundle of Schutz" EXACT [OBOL:automatic]
synonym: "midbrain dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "midbrain fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "midbrain posterior longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of midbrain" EXACT [OBOL:automatic]
xref: FMA:72453
xref: NIF_GrossAnatomy:birnlex_893
is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001891
intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0003006
name: dorsal nucleus of lateral lemniscus
synonym: "dorsal nucleus of the lateral lemniscus" EXACT [FMA:72483]
synonym: "nucleus of the lateral lemniscus, dorsal part" EXACT [ABA:NLLd]
synonym: "nucleus posterior lemnisci lateralis" EXACT [FMA:72483, FMA:TA]
synonym: "posterior nucleus of lateral lemniscus" EXACT [FMA:72483]
xref: ABA:NLLd
xref: BM:LLD
xref: FMA:72483
xref: NIF_GrossAnatomy:birnlex_894
is_a: UBERON:0006840 ! nucleus of lateral lemniscus
[Term]
id: UBERON:0003007
name: lateral parabrachial nucleus
def: "The lateral parabrachial nucleus induces thirst by stimulating the median preoptic nucleus. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [Wikipedia:Lateral_parabrachial_nucleus]
subset: uberon_slim
xref: FMA:72481
xref: NIF_GrossAnatomy:birnlex_897
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003008
name: dorsal longitudinal fasciculus of hypothalamus
def: "A dorsal longitudinal fasciculus that is part of a hypothalamus [Obol]." [OBOL:automatic]
synonym: "bundle of Schutz of hypothalamus" EXACT [OBOL:automatic]
synonym: "bundle of Schutz of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "bundle of Schutz of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "dorsal longitudinal fasciculus of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "dorsal longitudinal fasciculus of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of hypothalamus" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "hypothalamus bundle of Schutz" EXACT [OBOL:automatic]
synonym: "hypothalamus dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "hypothalamus fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "hypothalamus posterior longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of hypothalamus" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area bundle of Schutz" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area posterior longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region bundle of Schutz" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region posterior longitudinal fasciculus" EXACT [OBOL:automatic]
xref: FMA:62063
xref: NIF_GrossAnatomy:birnlex_898
is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
is_a: UBERON:0003931 ! diencephalic white matter
relationship: part_of UBERON:0001898
intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: part_of UBERON:0001898 ! hypothalamus
relationship: part_of UBERON:0001898 ! hypothalamus
relationship: part_of UBERON:0002430 ! lateral hypothalamic area
[Term]
id: UBERON:0003009
name: dorsal tegmental decussation
synonym: "decussatio tegmentalis posterior" EXACT [FMA:72451, FMA:TA]
synonym: "dorsal fountain decussation" EXACT [FMA:72451]
synonym: "fountain decussation of Meynert" EXACT []
synonym: "Meynert's decussation" EXACT [FMA:72451]
synonym: "posterior tegmental decussation" EXACT [FMA:72451]
xref: FMA:72451
xref: NIF_GrossAnatomy:birnlex_901
xref: SCTID:369248009
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0003010
name: lateral pes lemniscus
synonym: "deep pes lemniscus" EXACT [FMA:72459]
synonym: "lateral pontine bundle" EXACT [FMA:72459]
synonym: "laterale haubenfussschleife" EXACT []
synonym: "laterale pontine buendel" EXACT []
xref: FMA:72459
xref: NIF_GrossAnatomy:birnlex_902
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0003011
name: facial motor nucleus
def: "The facial motor nucleus is a collection of neurons in the brainstem that belong to the facial nerve. These lower motor neurons innervate the muscles of facial expression and the stapedius. [WP,unvetted]." [Wikipedia:Facial_motor_nucleus]
comment: see comments for facial nucleus. also check ZFA/pons
subset: uberon_slim
subset: vertebrate_core
synonym: "branchiomotor nucleus of facial nerve" EXACT [FMA:54582]
synonym: "facial motor nucleus" EXACT [FMA:54582]
synonym: "facial nerve motor nucleus" EXACT [ZFA:0000206]
synonym: "facial nucleus" RELATED [Wikipedia:Facial_nucleus]
synonym: "motor nucleus of facial nerve" EXACT [FMA:54582]
synonym: "motor nucleus of VII" EXACT [FMA:54582]
synonym: "motor nucleus VII" EXACT [ZFA:0000206]
synonym: "n. nervi facialis" RELATED LATIN [Wikipedia:Facial_motor_nucleus]
synonym: "nucleus motorius nervi facialis" EXACT [ZFA:0000206]
synonym: "nVII" EXACT [ZFA:0000206]
xref: ABA:VII
xref: FMA:54582
xref: http://upload.wikimedia.org/wikipedia/commons/6/6b/Gray788.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray788.png/200px-Gray788.png
xref: NIF_GrossAnatomy:birnlex_903
xref: TAO:0000206
xref: ZFA:0000206
property_value: "spatially_disjoint_from" UBERON:0002143
property_value: "spatially_disjoint_from" UBERON:0002147
property_value: "spatially_disjoint_from" UBERON:0002149
property_value: "spatially_disjoint_from" UBERON:0002151
property_value: "spatially_disjoint_from" UBERON:0002633
property_value: "spatially_disjoint_from" UBERON:0002682
property_value: "spatially_disjoint_from" UBERON:0002963
property_value: "spatially_disjoint_from" UBERON:0002968
property_value: "spatially_disjoint_from" UBERON:0007632
is_a: UBERON:0000127 ! facial nucleus
[Term]
id: UBERON:0003012
name: flocculonodular lobe
def: "The flocculonodular lobe is a lobe of the cerebellum consisting of the nodule and the flocculus. It is closely associated with the vestibulocerebellum. [WP,unvetted]." [Wikipedia:Flocculonodular_lobe]
subset: uberon_slim
synonym: "cerebellum flocculonodular lobe" EXACT [MA:0002965]
synonym: "flocculonodular lobe" EXACT [FMA:72253]
synonym: "flocculonodular lobe of cerebellum" EXACT [FMA:72253]
synonym: "lobus flocculonodularis" EXACT [FMA:72253, FMA:TA]
synonym: "posterior lobe-2 of cerebellum" EXACT [FMA:72253]
xref: EV:0100297
xref: FMA:72253
xref: http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/CerebellumDiv.png/200px-CerebellumDiv.png
xref: MA:0002965
xref: NIF_GrossAnatomy:birnlex_904
xref: SCTID:279361008
is_a: UBERON:0005293 ! cerebellum lobe
[Term]
id: UBERON:0003013
name: alar central lobule
def: "The lobulus centralis is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the alar central lobule. [WP,unvetted]." [Wikipedia:Alar_central_lobule]
subset: uberon_slim
synonym: "ala lobuli centralis" RELATED LATIN [Wikipedia:Alar_central_lobule]
synonym: "alae of central lobule" EXACT [FMA:72517]
synonym: "lobules II, III of vermis" EXACT [FMA:72517]
xref: FMA:72517
xref: http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray702.png
xref: NIF_GrossAnatomy:birnlex_907
is_a: UBERON:0004003 ! cerebellum hemisphere lobule
[Term]
id: UBERON:0003015
name: anterior quadrangular lobule
synonym: "anterior crescentic lobule of cerebellum" EXACT [FMA:72516]
synonym: "anterior quadrangular lobule of cerebellum" EXACT [FMA:72516]
synonym: "anterior quadrangular lobule of cerebellum [H IV et V]" EXACT [FMA:72516]
synonym: "anterior semilunar lobule" EXACT [FMA:72516]
synonym: "lobulus quadrangularis anterior cerebelli [h iv et v]" EXACT [FMA:72516, FMA:TA]
synonym: "semilunar lobule-1 (anterior)" EXACT [FMA:72516]
xref: FMA:72516
xref: NIF_GrossAnatomy:birnlex_913
xref: SCTID:369041006
is_a: UBERON:0004003 ! cerebellum hemisphere lobule
[Term]
id: UBERON:0003016
name: postcommissural fornix
xref: FMA:62062
xref: NIF_GrossAnatomy:birnlex_914
is_a: UBERON:0000052 ! fornix of brain
is_a: UBERON:0003931 ! diencephalic white matter
relationship: part_of UBERON:0002430 ! lateral hypothalamic area
[Term]
id: UBERON:0003017
name: substantia innominata
def: "The substantia innominata (literally 'unnamed substance') of Meynert is a stratum consisting partly of gray and partly of white substance, which lies below the anterior part of the thalamus and lentiform nucleus. The gross anatomical structure is called anterior perforated substance because to the naked eye looks perforated by many holes. Holes are due to many blood vessels that pass through this area. It is part of the basal forebrain. [WP,unvetted]." [Wikipedia:Substantia_innominata]
subset: uberon_slim
synonym: "innominate substance" EXACT [FMA:61885]
synonym: "nucleus of substantia innominata" EXACT [FMA:61885]
synonym: "substantia innominata of Reichert" RELATED [BTO:0002447]
synonym: "substantia innominata of Reil" RELATED [BTO:0002447]
xref: ABA:SI
xref: BM:Tel-SI
xref: BTO:0002447
xref: FMA:61885
xref: GAID:638
xref: http://upload.wikimedia.org/wikipedia/commons/3/36/Substantia_innominata_MRI.PNG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Substantia_innominata_MRI.PNG/200px-Substantia_innominata_MRI.PNG
xref: MESH:A.08.186.211.577.820
xref: NIF_GrossAnatomy:birnlex_915
property_value: "spatially_disjoint_from" UBERON:0007627
is_a: UBERON:0009663 ! telencephalic nucleus
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon
relationship: part_of UBERON:0002743 {source="WP"} ! basal forebrain
relationship: part_of UBERON:0002778 {source="ABA"} ! ventral pallidum
[Term]
id: UBERON:0003018
name: parvicellular part of ventral posteromedial nucleus
synonym: "gustatory nucleus (thalamus)" EXACT [NIF_GrossAnatomy:birnlex_917]
synonym: "gustatory thalamic nucleus" EXACT [FMA:62207]
synonym: "nucleus ventralis posterior medialis thalami, pars parvicellularis" EXACT [NIF_GrossAnatomy:birnlex_917]
synonym: "pars parvicellularis nuclei ventralis posteromedialis thalami" EXACT [FMA:62207, FMA:TA]
synonym: "parvicellular part of ventral posteromedial nucleus of thalamus" EXACT [FMA:62207]
synonym: "ventral posteromedial nucleus of thalamus, parvicellular part" EXACT [FMA:62207]
synonym: "ventral posteromedial nucleus, parvocellular part" EXACT [FMA:62207]
synonym: "ventral posteromedial thalamic nucleus, parvicellular part" EXACT [FMA:62207]
synonym: "ventroposteromedial nucleus of the thalamus, parvicellular part" EXACT [NIF_GrossAnatomy:birnlex_917]
xref: ABA:VPMpc
xref: FMA:62207
xref: NIF_GrossAnatomy:birnlex_917
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0003019
name: oral part of ventral posterolateral nucleus
synonym: "nucleus lateralis intermedius lateralis" EXACT [NIF_GrossAnatomy:birnlex_918]
synonym: "nucleus posteroventralis oralis" EXACT [NIF_GrossAnatomy:birnlex_918]
synonym: "nucleus ventralis intermedius (dewulf)" EXACT [NIF_GrossAnatomy:birnlex_918]
synonym: "nucleus ventralis intermedius (walker)" EXACT [NIF_GrossAnatomy:birnlex_918]
synonym: "nucleus ventralis intermedius thalami" EXACT [NIF_GrossAnatomy:birnlex_918]
synonym: "nucleus ventralis posterior lateralis, pars oralis" EXACT [NIF_GrossAnatomy:birnlex_918]
synonym: "nucleus ventrointermedius" EXACT [NIF_GrossAnatomy:birnlex_918]
synonym: "ventral part of ventral lateral posterior nucleus (jones)" EXACT []
synonym: "ventral posterolateral nucleus, oral part" EXACT [FMA:62205]
synonym: "ventral posterolateral thalamic nucleus, oral part" EXACT [FMA:62205]
xref: FMA:62205
xref: NIF_GrossAnatomy:birnlex_918
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0003020
name: subcallosal area
def: "The subcallosal area (parolfactory area of Broca, area parolfactoria) is a small triangular field on the medial surface of the hemisphere in front of the subcallosal gyrus, from which it is separated by the posterior parolfactory sulcus; it is continuous below with the olfactory trigone, and above and in front with the cingulate gyrus; it is limited anteriorly by the anterior parolfactory sulcus. [WP,unvetted]." [Wikipedia:Subcallosal_area]
subset: uberon_slim
synonym: "adolfactory area" EXACT [FMA:61890]
synonym: "area paraolfactoria" EXACT [FMA:61890, FMA:TA]
synonym: "area subcallosa, area parolfactoria" RELATED LATIN [Wikipedia:Subcallosal_area]
synonym: "paraolfactory area" EXACT [FMA:61890]
synonym: "parolfactory area" EXACT [FMA:61890]
xref: FMA:61890
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: NIF_GrossAnatomy:birnlex_919
xref: SCTID:362357004
is_a: UBERON:0002020 ! gray matter of neuraxis
disjoint_from: UBERON:0010010 ! basal nucleus of telencephalon
[Term]
id: UBERON:0003021
name: central lobule
def: "The central lobule is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the ala lobuli centralis. [WP,unvetted]." [Wikipedia:Central_lobule]
subset: uberon_slim
synonym: "central lobule of cerebellum" EXACT [FMA:72519]
synonym: "central lobule of cerebellum [II and III]" EXACT [FMA:72519]
synonym: "lobulus centralis" RELATED LATIN [Wikipedia:Central_lobule]
synonym: "lobulus centralis cerebelli [ii et iii]" EXACT [FMA:72519, FMA:TA]
xref: ABA:CENT
xref: FMA:72519
xref: http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray703.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e4/Gray703.png/200px-Gray703.png
xref: NIF_GrossAnatomy:birnlex_920
xref: SCTID:279383007
property_value: "spatially_disjoint_from" UBERON:0004077
is_a: UBERON:0004003 ! cerebellum hemisphere lobule
[Term]
id: UBERON:0003022
name: lobe parts of cerebral cortex
comment: check w.r.t regional part of cerebreal cortex
synonym: "cerebral cortical segment" RELATED [FMA:68603]
synonym: "regional organ part of cerebral cortex" RELATED [FMA:68603]
synonym: "segment of cerebral cortex" RELATED [NIF_GrossAnatomy:birnlex_922]
xref: FMA:68603
xref: NIF_GrossAnatomy:birnlex_922
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0003023
name: pontine tegmentum
def: "The pontine tegmentum is a part of the pons of the brain involved in the initiation of REM sleep. It includes the pedunculopontine nucleus and the laterodorsal tegmental nucleus, among others, and is located near the raphe nucleus and the locus ceruleus. The trapezoid body is part of the pontine tegmentum. [WP,unvetted]." [Wikipedia:Pontine_tegmentum]
subset: uberon_slim
synonym: "dorsal portion of pons" EXACT [FMA:71108]
synonym: "tegmental portion of pons" EXACT [FMA:71108]
synonym: "tegmentum of pons" EXACT [FMA:71108]
synonym: "tegmentum pontis" EXACT [FMA:71108, FMA:TA]
synonym: "tegmentum pontis" RELATED LATIN [Wikipedia:Pontine_tegmentum]
xref: FMA:71108
xref: http://upload.wikimedia.org/wikipedia/commons/9/9c/Brainstem_Abducens.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Brainstem_Abducens.png/200px-Brainstem_Abducens.png
xref: NIF_GrossAnatomy:birnlex_923
xref: SCTID:362401009
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_part UBERON:0002047 ! pontine raphe nucleus
relationship: has_part UBERON:0002128 ! superior olivary complex
relationship: has_part UBERON:0002148 ! locus ceruleus
relationship: has_part UBERON:0002149 ! superior salivatory nucleus
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0003024
name: principal part of ventral posteromedial nucleus
synonym: "nucleus ventralis posteromedialis, pars prinicipalis" EXACT [NIF_GrossAnatomy:birnlex_927]
xref: FMA:62208
xref: NIF_GrossAnatomy:birnlex_927
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0003025
name: brachium of inferior colliculus
def: "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [WP,unvetted]." [Wikipedia:Brachium_of_inferior_colliculus]
subset: uberon_slim
synonym: "brachium colliculi inferioris" RELATED LATIN [Wikipedia:Brachium_of_inferior_colliculus]
synonym: "brachium of medial geniculate" EXACT [FMA:71114]
synonym: "inferior brachium" EXACT [FMA:71114]
synonym: "inferior collicular brachium" EXACT [FMA:71114]
synonym: "inferior colliculus brachium" EXACT [FMA:71114]
synonym: "inferior quadrigeminal brachium" EXACT [FMA:71114]
synonym: "peduncle of inferior colliculus" EXACT [FMA:71114]
xref: BM:MB-BSC
xref: FMA:71114
xref: http://upload.wikimedia.org/wikipedia/commons/2/29/Human_brainstem-thalamus_posterior_view_description.JPG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Human_brainstem-thalamus_posterior_view_description.JPG/200px-Human_brainstem-thalamus_posterior_view_description.JPG
xref: NIF_GrossAnatomy:birnlex_929
is_a: UBERON:0003544 ! brain white matter
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0003026
name: limitans nucleus
synonym: "limitans thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_931]
synonym: "nucleus limitans" EXACT [NIF_GrossAnatomy:birnlex_931]
synonym: "nucleus limitans opticus (hassler)" EXACT [NIF_GrossAnatomy:birnlex_931]
synonym: "nucleus limitans thalami" EXACT [NIF_GrossAnatomy:birnlex_931]
xref: BM:Die-Th-L
xref: FMA:62220
xref: NIF_GrossAnatomy:birnlex_931
xref: SCTID:369181002
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003027
name: cingulate cortex
def: "The cingulate cortex is a part of the brain situated in the medial aspect of the cortex. It is extended from the corpus callosum below to the cingulate sulcus above, at least anteriorly. [WP,unvetted]." [Wikipedia:Cingulate_cortex]
subset: uberon_slim
synonym: "gyrus cingulatus" RELATED LATIN [Wikipedia:Cingulate_cortex]
xref: BM:Tel-Cx-Cg
xref: BTO:0003975
xref: EFO:0000343
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray727_cingulate_gyrus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray727_cingulate_gyrus.png/200px-Gray727_cingulate_gyrus.png
xref: MA:0000904
xref: ncithesaurus:Cingulate_Cortex
xref: NIF_GrossAnatomy:birnlex_934
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
[Term]
id: UBERON:0003028
name: commissure of inferior colliculus
def: "A commissure that is part of a inferior colliculus [Obol]." [OBOL:automatic]
synonym: "caudal colliculus commissure" EXACT [OBOL:automatic]
synonym: "commissure of caudal colliculus" EXACT [OBOL:automatic]
synonym: "commissure of inferior colliculi" EXACT [FMA:71115]
synonym: "commissure of posterior colliculus" EXACT [OBOL:automatic]
synonym: "commissure of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "inferior collicular commissure" EXACT [FMA:71115]
synonym: "inferior colliculus commissure" EXACT [FMA:71115]
synonym: "posterior colliculus commissure" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum commissure" EXACT [OBOL:automatic]
xref: FMA:71115
xref: NIF_GrossAnatomy:birnlex_935
xref: SCTID:369260005
is_a: UBERON:0005970 ! brain commissure
relationship: part_of UBERON:0001946
intersection_of: UBERON:0001020 ! commissure
intersection_of: part_of UBERON:0001946 ! inferior colliculus
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0003029
name: stria terminalis
def: "The stria terminalis (terminal stria) is a structure in the brain consisting of a band of fibers running along the lateral margin of the ventricular surface of the thalamus. Serving as a major output pathway of the amygdala, the stria terminalis runs from its corticomedial division to the ventral medial nucleus of the hypothalamus. [WP,unvetted]." [Wikipedia:Stria_terminalis]
subset: uberon_slim
synonym: "semicircular stria" EXACT [FMA:61974]
synonym: "stria terminalis" RELATED LATIN [Wikipedia:Stria_terminalis]
synonym: "terminal stria" EXACT [Wikipedia:Terminal_stria]
xref: BM:ST
xref: BM:STr
xref: BTO:0004616
xref: FMA:61974
xref: http://upload.wikimedia.org/wikipedia/commons/e/ed/Gray683.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Gray683.png/200px-Gray683.png
xref: NIF_GrossAnatomy:birnlex_937
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0003030
name: posterior nucleus of thalamus
subset: vertebrate_core
synonym: "nucleus posterior thalami" EXACT [NIF_GrossAnatomy:birnlex_939]
xref: BM:Die-Th-Po
xref: FMA:62221
xref: ncithesaurus:Posterior_Nucleus_of_the_Thalamus
xref: NIF_GrossAnatomy:birnlex_939
xref: SCTID:424901000
xref: TAO:0000325
xref: ZFA:0000325
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0003031
name: submedial nucleus
synonym: "gelatinosus thalamic nucleus" EXACT [FMA:62223]
synonym: "nucleus submedialis thalami" EXACT [FMA:62223, FMA:TA]
synonym: "nucleus submedius thalami" EXACT [NIF_GrossAnatomy:birnlex_946]
synonym: "submedial nucleus of thalamus" EXACT [FMA:62223]
synonym: "submedial nucleus thalamus" EXACT [NIF_GrossAnatomy:birnlex_946]
synonym: "submedial thalamic nucleus" EXACT [NIF_GrossAnatomy:birnlex_946]
xref: ABA:SMT
xref: EV:0100203
xref: FMA:62223
xref: NIF_GrossAnatomy:birnlex_946
xref: SCTID:279151007
property_value: "spatially_disjoint_from" UBERON:0002739
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003033
name: suprageniculate nucleus
synonym: "nucleus suprageniculatus" EXACT [NIF_GrossAnatomy:birnlex_953]
synonym: "suprageniculate thalamic nucleus" EXACT [FMA:62222]
xref: ABA:SGN
xref: BM:Die-Th-SG
xref: FMA:62222
xref: NIF_GrossAnatomy:birnlex_953
xref: SCTID:369180001
property_value: "spatially_disjoint_from" UBERON:0002709
property_value: "spatially_disjoint_from" UBERON:0002983
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003034
name: central dorsal nucleus
synonym: "nucleus centralis dorsalis thalami" EXACT [NIF_GrossAnatomy:birnlex_956]
synonym: "nucleus centralis superior lateralis" EXACT [NIF_GrossAnatomy:birnlex_956]
synonym: "nucleus centralis superior lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_956]
synonym: "nucleus circularis" EXACT [NIF_GrossAnatomy:birnlex_956]
xref: ABA:NC
xref: FMA:62169
xref: NIF_GrossAnatomy:birnlex_956
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0003035
name: regional part of cerebellar white matter
synonym: "segment of cerebellar white matter" EXACT [NIF_GrossAnatomy:birnlex_959]
xref: FMA:72547
xref: NIF_GrossAnatomy:birnlex_959
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0002317
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0002317 ! white matter of cerebellum
relationship: part_of UBERON:0002317 ! white matter of cerebellum
[Term]
id: UBERON:0003036
name: central lateral nucleus
synonym: "central lateral nucleus of thalamus" EXACT [FMA:62170]
synonym: "central lateral thalamic nucleus" EXACT [FMA:62170]
synonym: "centrolateral thalamic nucleus" EXACT [FMA:62170]
synonym: "nucleus centralis lateralis of thalamus" EXACT [NIF_GrossAnatomy:birnlex_961]
synonym: "nucleus centralis lateralis thalami" EXACT [NIF_GrossAnatomy:birnlex_961]
xref: ABA:CL
xref: BM:Die-CL
xref: EV:0100205
xref: FMA:62170
xref: NIF_GrossAnatomy:birnlex_961
xref: SCTID:279153005
property_value: "spatially_disjoint_from" UBERON:0001922
property_value: "spatially_disjoint_from" UBERON:0001923
property_value: "spatially_disjoint_from" UBERON:0001924
property_value: "spatially_disjoint_from" UBERON:0002955
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0003037
name: septum
def: "a wall, dividing a cavity or structure into smaller ones[WP]." [Wikipedia:Septum]
comment: general anatomical term in FMA
synonym: "septa" EXACT PLURAL []
xref: AAO:0011127
xref: BM:Tel-Spt
xref: FMA:86461
xref: OpenCyc:Mx4rrqot_on_EdaAAAACs0uFOQ
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0003038
name: thoracic spinal cord
def: "The thoracic nerves are the spinal nerves emerging from the thoracic vertebrae. [WP,unvetted]." [Wikipedia:Thoracic_spinal_cord]
subset: uberon_slim
synonym: "segmenta thoracica medullae spinalis [1-12]" EXACT [FMA:71167, FMA:TA]
synonym: "thoracic region of spinal cord" EXACT [FMA:71167]
synonym: "thoracic segment of spinal cord" EXACT [FMA:71167]
synonym: "thoracic segments of spinal cord [1-12]" EXACT [FMA:71167]
synonym: "thoracic spinal cord" EXACT [FMA:71167]
xref: FMA:71167
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Gray820.png/200px-Gray820.png
xref: ncithesaurus:Thoracic_Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_966
xref: SCTID:278750009
is_a: UBERON:0005844 ! spinal cord segment
relationship: part_of UBERON:0000915
intersection_of: UBERON:0005844 ! spinal cord segment
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0008231 ! dorsal thoracic segment of trunk
[Term]
id: UBERON:0003039
name: anterior commissure anterior part
def: "the horseshoe-shaped tract that connects the two olfactory bulbs." [MP:0010859]
synonym: "anterior commissure pars anterior" EXACT [MP:0010859]
synonym: "anterior commissure, anterior part" EXACT [FMA:61963]
synonym: "anterior part of anterior commissure" EXACT [FMA:61963]
synonym: "anterior part of anterior commissure" EXACT [MP:0008230]
synonym: "olfactory limb of anterior commissure" EXACT [FMA:61963]
synonym: "olfactory part of anterior commissure" EXACT [FMA:61963]
synonym: "pars anterior" BROAD [MP:0008230]
synonym: "pars anterior commissurae anterioris" EXACT [MP:0008230]
xref: FMA:61963
xref: NIF_GrossAnatomy:birnlex_969
is_a: UBERON:0011299 ! white matter of telencephalon
disjoint_from: UBERON:0006964 ! pars distalis of adenohypophysis
relationship: part_of UBERON:0000935 ! anterior commissure
[Term]
id: UBERON:0003040
name: central gray substance of midbrain
def: "Periaqueductal gray (PAG; also called the 'central gray') is the gray matter located around the cerebral aqueduct within the midbrain. It plays a role in the descending modulation of pain and in defensive behaviour. The ascending pain and temperature fibers of the spinothalamic tract also send information to the PAG via the spinomesencephalic tract. The spinomesencephalic tract is so-named because the fibers originate in the spine and terminate in the mesencephalon, another name for the midbrain, the part of the brain in which the PAG resides. [WP,unvetted]." [https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376, Wikipedia:Periaqueductal_gray]
comment: TODO - resolve MA - see tracker
subset: uberon_slim
subset: vertebrate_core
synonym: "anulus of cerebral aqueduct" EXACT [FMA:74510]
synonym: "central (periaqueductal) gray" EXACT [FMA:74510]
synonym: "griseum centrale" EXACT [NIF_GrossAnatomy:birnlex_973]
synonym: "periaquectuctal grey" EXACT DUBIOUS [https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376, MA:0002895]
synonym: "periaqueductal gray" EXACT [FMA:74510]
synonym: "periaqueductal gray matter" EXACT [FMA:74510]
synonym: "periaqueductal gray of tegmentum" EXACT [FMA:74510]
synonym: "periaqueductal grey matter" EXACT [EV:0100249]
synonym: "periaqueductal grey substance" EXACT [FMA:74510]
synonym: "s. grisea centralis" RELATED LATIN [Wikipedia:Periaqueductal_gray]
synonym: "substantia grisea centralis" EXACT [NIF_GrossAnatomy:birnlex_973]
xref: ABA:PAG
xref: BM:MB-PAG
xref: BTO:0002701
xref: EFO:0002470
xref: EV:0100249
xref: FMA:74510
xref: GAID:585
xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png
xref: MA:0000209
xref: MA:0002895
xref: MESH:A.08.186.211.132.659.822.595
xref: NIF_GrossAnatomy:birnlex_973
xref: SCTID:369233003
xref: TAO:0000518
xref: ZFA:0000518
property_value: "spatially_disjoint_from" UBERON:0001715
property_value: "spatially_disjoint_from" UBERON:0001944
property_value: "spatially_disjoint_from" UBERON:0001947
property_value: "spatially_disjoint_from" UBERON:0001966
property_value: "spatially_disjoint_from" UBERON:0002141
property_value: "spatially_disjoint_from" UBERON:0002438
property_value: "spatially_disjoint_from" UBERON:0002691
property_value: "spatially_disjoint_from" UBERON:0002696
property_value: "spatially_disjoint_from" UBERON:0002722
property_value: "spatially_disjoint_from" UBERON:0002995
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
[Term]
id: UBERON:0003041
name: trigeminal nerve fibers
synonym: "central part of trigeminal nerve" EXACT [FMA:72501]
synonym: "trigeminal nerve fibers" EXACT [FMA:72501]
synonym: "trigeminal nerve tract" EXACT [FMA:72501]
xref: FMA:72501
xref: NIF_GrossAnatomy:birnlex_974
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003043
name: posterior part of anterior commissure
def: "the major forebrain commissure that connects the two temporal lobes of the cortex." [MP:0010860]
synonym: "anterior commissure pars posterior" EXACT [MP:0010860]
synonym: "anterior commissure temporal limb" EXACT [MP:0008230]
synonym: "anterior commissure, posterior part" EXACT [FMA:61964]
synonym: "pars posterior" BROAD [MP:0008229]
synonym: "temporal limb of anterior commissure" EXACT [FMA:61964]
xref: FMA:61964
xref: NIF_GrossAnatomy:birnlex_977
is_a: UBERON:0011299 ! white matter of telencephalon
disjoint_from: UBERON:0003217 ! neural lobe of neurohypophysis
relationship: part_of UBERON:0000935 ! anterior commissure
[Term]
id: UBERON:0003044
name: uncinate fasciculus
def: "The uncinate fasciculus is a white matter tract in the human brain that connects parts of the limbic system such as the hippocampus and amygdala in the temporal lobe with frontal ones such as the orbitofrontal cortex. Its function is unknown though it is affected in several psychiatric conditions. It is the last white matter tract to mature in the human brain. [WP,unvetted]." [Wikipedia:Uncinate_fasciculus]
subset: uberon_slim
synonym: "cerebral uncinate fasciculus" EXACT [FMA:77636]
xref: FMA:77636
xref: http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray751.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Gray751.png/200px-Gray751.png
xref: NIF_GrossAnatomy:birnlex_983
xref: SCTID:369083001
is_a: UBERON:0001019 ! fascicle
[Term]
id: UBERON:0003045
name: dorsal longitudinal fasciculus
def: "The dorsal longitudinal fasciculus (DLF) (not to be confused with the medial longitudinal fasciculus) is a white matter fiber tract located within the brain stem, specifically in the dorsal brainstem tegmentum. The DLF travels through the periaqueductal gray matter. The tract is comprised of a diffuse brainstem pathway located in the periventricular gray matter comprising ascending visceral sensory axons and descending hypothalamic axons. As with all white matter tracts, the DLF consists of myelinated axons carrying information between neurons. The DLF, carries both ascending and descending fibers, conveys visceral motor and sensory signals. [WP,unvetted]." [Wikipedia:Dorsal_longitudinal_fasciculus]
subset: uberon_slim
subset: vertebrate_core
synonym: "bundle of Schutz" EXACT [FMA:83845]
synonym: "DLF" RELATED [ZFA:0005266]
synonym: "fasciculus longitudinalis posterior" EXACT [FMA:83845, FMA:TA]
synonym: "fasciculus longitudinalis posterior; fasciculus longitudinalis dorsalis" RELATED LATIN [Wikipedia:Dorsal_longitudinal_fasciculus]
synonym: "fasciculus of Schutz" EXACT [FMA:83845]
synonym: "posterior longitudinal fasciculus" EXACT [FMA:83845]
xref: FMA:83845
xref: NIF_GrossAnatomy:birnlex_986
xref: SCTID:369082006
xref: ZFA:0005266
is_a: UBERON:0005838 ! fasciculus of brain
[Term]
id: UBERON:0003046
name: ventral acoustic stria
synonym: "anterior acoustic stria" EXACT [FMA:72498]
synonym: "stria cochlearis anterior" EXACT [FMA:72498, FMA:TA]
xref: FMA:72498
xref: NIF_GrossAnatomy:birnlex_991
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0003047
name: regional part of pretectal region
def: "A regional part of brain that is part of a pretectal region [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of pretectal area" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of pretectal region" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of pretectum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of pretectal area" EXACT [OBOL:automatic]
synonym: "biological structure of brain of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "biological structure of brain of pretectal region" EXACT [OBOL:automatic]
synonym: "biological structure of brain of pretectum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of pretectal area" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of pretectal region" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of pretectum" EXACT [OBOL:automatic]
synonym: "brain biological structure of pretectal area" EXACT [OBOL:automatic]
synonym: "brain biological structure of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "brain biological structure of pretectal region" EXACT [OBOL:automatic]
synonym: "brain biological structure of pretectum" EXACT [OBOL:automatic]
synonym: "neuraxis segment of pretectal area" EXACT [OBOL:automatic]
synonym: "neuraxis segment of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "neuraxis segment of pretectal region" EXACT [OBOL:automatic]
synonym: "neuraxis segment of pretectum" EXACT [OBOL:automatic]
synonym: "pretectal area anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "pretectal area biological structure of brain" EXACT [OBOL:automatic]
synonym: "pretectal area brain anatomical structure" EXACT [OBOL:automatic]
synonym: "pretectal area brain biological structure" EXACT [OBOL:automatic]
synonym: "pretectal area neuraxis segment" EXACT [OBOL:automatic]
synonym: "pretectal area regional part of brain" EXACT [OBOL:automatic]
synonym: "pretectal area segment of brain" EXACT [OBOL:automatic]
synonym: "pretectal nuclei anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "pretectal nuclei biological structure of brain" EXACT [OBOL:automatic]
synonym: "pretectal nuclei brain anatomical structure" EXACT [OBOL:automatic]
synonym: "pretectal nuclei brain biological structure" EXACT [OBOL:automatic]
synonym: "pretectal nuclei neuraxis segment" EXACT [OBOL:automatic]
synonym: "pretectal nuclei regional part of brain" EXACT [OBOL:automatic]
synonym: "pretectal nuclei segment of brain" EXACT [OBOL:automatic]
synonym: "pretectal region anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "pretectal region biological structure of brain" EXACT [OBOL:automatic]
synonym: "pretectal region brain anatomical structure" EXACT [OBOL:automatic]
synonym: "pretectal region brain biological structure" EXACT [OBOL:automatic]
synonym: "pretectal region neuraxis segment" EXACT [OBOL:automatic]
synonym: "pretectal region regional part of brain" EXACT [OBOL:automatic]
synonym: "pretectal region segment" EXACT [FMA:74519]
synonym: "pretectal region segment of brain" EXACT [OBOL:automatic]
synonym: "pretectum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "pretectum biological structure of brain" EXACT [OBOL:automatic]
synonym: "pretectum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "pretectum brain biological structure" EXACT [OBOL:automatic]
synonym: "pretectum neuraxis segment" EXACT [OBOL:automatic]
synonym: "pretectum regional part of brain" EXACT [OBOL:automatic]
synonym: "pretectum segment of brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of pretectal area" EXACT [OBOL:automatic]
synonym: "regional part of brain of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "regional part of brain of pretectal region" EXACT [OBOL:automatic]
synonym: "regional part of brain of pretectum" EXACT [OBOL:automatic]
synonym: "segment of brain of pretectal area" EXACT [OBOL:automatic]
synonym: "segment of brain of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "segment of brain of pretectal region" EXACT [OBOL:automatic]
synonym: "segment of brain of pretectum" EXACT [OBOL:automatic]
synonym: "segment of pretectal region" EXACT [NIF_GrossAnatomy:birnlex_993]
xref: FMA:74519
xref: NIF_GrossAnatomy:birnlex_993
is_a: UBERON:0002966 ! regional part of midbrain tectum
relationship: part_of UBERON:0001944
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001944 ! pretectal region
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0003048
name: regional part of hypothalamus
def: "A regional part of brain that is part of a hypothalamus [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of hypothalamus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "biological structure of brain of hypothalamus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "biological structure of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of hypothalamus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "brain biological structure of hypothalamus" EXACT [OBOL:automatic]
synonym: "brain biological structure of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "brain biological structure of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "hypothalamus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "hypothalamus biological structure of brain" EXACT [OBOL:automatic]
synonym: "hypothalamus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "hypothalamus brain biological structure" EXACT [OBOL:automatic]
synonym: "hypothalamus neuraxis segment" EXACT [OBOL:automatic]
synonym: "hypothalamus regional part of brain" EXACT [OBOL:automatic]
synonym: "hypothalamus segment" EXACT [FMA:67706]
synonym: "hypothalamus segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of hypothalamus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "neuraxis segment of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area biological structure of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area brain anatomical structure" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area brain biological structure" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area neuraxis segment" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area regional part of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area segment of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region biological structure of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region brain anatomical structure" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region brain biological structure" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region neuraxis segment" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region regional part of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region segment of brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of hypothalamus" EXACT [OBOL:automatic]
synonym: "regional part of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "regional part of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "segment of brain of hypothalamus" EXACT [OBOL:automatic]
synonym: "segment of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "segment of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "segment of hypothalamus" EXACT [NIF_GrossAnatomy:birnlex_995]
xref: FMA:67706
xref: NIF_GrossAnatomy:birnlex_995
xref: SCTID:360454003
is_a: UBERON:0002784 ! regional part of diencephalon
relationship: part_of UBERON:0001898
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001898 ! hypothalamus
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0003049
name: collagen and cuticulin-based cuticle
alt_id: UBERON:WBbt_0005755
def: "A rigid external coating which is secreted by the hypodermis, seam and some transitional epithelial cells which covers the outer body, the major openings into the body cavity from the exterior, and two large sensory bristles, the male spicules. The cuticle of the spicules, the hook, and of some portions of the spicule channels is especially rigid and is probably sclerotized. Similar sclerotic features are occasionally noted in the ventral surface of the male tail fan[WBbt]. The main structural components of the nematode cuticle are proteins, highly cross-linked collagens and specialised insoluble proteins known as cuticlins, together with glycoproteins and lipids[WP]." [UBERON:cjm, WA:dh]
comment: Note that GO has a superclass protein-based cuticle development // taxonomic restriction may be too strict
subset: uberon_slim
synonym: "nematode cuticle" RELATED []
xref: WBbt:0005755
is_a: UBERON:0001002 ! cuticle
[Term]
id: UBERON:0003050
name: olfactory placode
def: "A thick plate of cells derived from the neural ectoderm in the head region of the embryo that develops into the olfactory region of the nasal cavity." [Wikipedia:Olfactory_placode, XAO:0000005]
comment: Olfactory placodes are the only ectodermal placodes to produce glia, a cell type typically derived from neural crest.
subset: uberon_slim
subset: vertebrate_core
synonym: "nasal placode" RELATED []
synonym: "olfactory placodes" EXACT PLURAL []
xref: AAO:0011076
xref: EFO:0003420
xref: EHDAA2:0001232
xref: EHDAA:1504
xref: EMAPA:16543
xref: TAO:0000048
xref: VHOG:0000186
xref: XAO:0000005
xref: ZFA:0000048
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007497 {source="EHDAA2"} ! developing epithelial placode
is_a: UBERON:0009955 {source="ZFA"} ! neurogenic placode
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0002346 ! neurectoderm
relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003051
name: ear vesicle
alt_id: UBERON:0004373
def: "The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator]
subset: vertebrate_core
synonym: "auditory vesicle" RELATED [BTO:0002661]
synonym: "otic vesicle" EXACT []
synonym: "otocyst" RELATED []
synonym: "OV" RELATED []
xref: AAO:0011080
xref: BTO:0002661
xref: EHDAA2:0001342
xref: EMAPA:16669
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray40.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray40.png/200px-Gray40.png
xref: ncithesaurus:Otic_Vesicle
xref: SCTID:308792006
xref: TAO:0000051
xref: VHOG:0001148
xref: XAO:0000006
xref: ZFA:0000051
property_value: UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string
is_a: UBERON:0005085 ! ectodermal placode
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007497 ! developing epithelial placode
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_into UBERON:0001846
relationship: part_of UBERON:0000924
intersection_of: UBERON:0000483 ! epithelium
intersection_of: develops_into UBERON:0001846 ! internal ear
intersection_of: part_of UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0009123 {source="NBK53175"} ! otic cup
relationship: develops_into UBERON:0001846 ! internal ear
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0003052
name: midbrain-hindbrain boundary
def: "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate." [GO:0021555]
comment: editor note: consider adding class for organizer. Consider adding separate class for isthmus as a structure
subset: uberon_slim
subset: vertebrate_core
synonym: "isthmus" RELATED []
synonym: "isthmus/MHB" RELATED [Geisha:syn]
synonym: "MHB" EXACT []
synonym: "mid-hindbrain boundary" EXACT []
synonym: "mid-hindbrain junction" EXACT []
synonym: "midbrain hindbrain boundary" EXACT []
xref: AAO:0011064
xref: EHDAA2:0004395
xref: EHDAA:5789
xref: TAO:0000042
xref: VHOG:0000649
xref: XAO:0000016
xref: ZFA:0000042
is_a: UBERON:0006800 {source="ZFA"} ! anatomical line
relationship: adjacent_to UBERON:0001891
relationship: adjacent_to UBERON:0002028
intersection_of: UBERON:0006800 ! anatomical line
intersection_of: adjacent_to UBERON:0001891 ! midbrain
intersection_of: adjacent_to UBERON:0002028 ! hindbrain
relationship: adjacent_to UBERON:0001891 ! midbrain
relationship: adjacent_to UBERON:0002028 ! hindbrain
relationship: develops_from UBERON:0009615 {source="ZFA"} ! midbrain hindbrain boundary neural plate
relationship: part_of UBERON:0000955 {source="ZFA"} ! brain
[Term]
id: UBERON:0003053
name: ventricular zone
def: "There are two primary regions that are thought to give rise to neurons that make up the cerebellum. The first region is the ventricular zone (the roof of the fourth ventricle). This area produces Purkinje cells and deep cerebellar nuclear neurons." [BTO:0003654]
subset: vertebrate_core
synonym: "brain ventricular zone" EXACT [MA:0000819]
synonym: "ventricular zone of brain" EXACT []
synonym: "VZ" EXACT []
xref: AAO:0011112
xref: BTO:0003654
xref: EFO:0003624
xref: MA:0000819
xref: TAO:0001083
xref: VHOG:0001224
xref: XAO:0000021
xref: ZFA:0001083
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003054
name: roof plate
def: " a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040]
comment: TODO - Note that although this is classically defined as being located on the neural tube, in many AOs the roof plate continues post-embryonically after the neural tube has ceased to exist. Consider 'roof plate of neural tube'. TODO - alar plate vs roof plate
subset: uberon_slim
subset: vertebrate_core
synonym: "alar plate" RELATED [Wikipedia:Roof_plate]
synonym: "roofplate" EXACT []
xref: AAO:0011097
xref: TAO:0007058
xref: ZFA:0007058
property_value: UBPROP:0000001 "Multi-tissue structure that is the dorsal-most aspect of the devleloping neural tube.[TAO]" xsd:string
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0003055
name: periderm
def: "A temporary epithelium that derives from the outer layer of the ectdoerm and is shed once the inner layer differentiates to form a true epidermis." [ISBN:9780878932504]
comment: Originally the epidermis is one layer thick, in most vertebrates it soon becomes a two-layered structure. The outer layer gives rise to the periderm. The periderm goes through distinct developmental phases and is ultimately sloughed into the amniotic fluid when differentiation of the underlying epidermal layers is complete. The function of the periderm is not known, but is thought to be related to transport/exchange between the fetus and the amniotic fluid (http://courses.washington.edu/hubio567/devbio/periderm.html)
subset: uberon_slim
synonym: "epidermis epithelial layer" RELATED []
synonym: "epidermis outer layer" RELATED []
synonym: "EVL" RELATED [ZFA:0001185]
synonym: "periderm" RELATED []
xref: EHDAA2:0001846
xref: EHDAA:6538
xref: ncithesaurus:Periderm
xref: TAO:0001185
xref: VHOG:0001680
xref: XAO:0000029
xref: ZFA:0001185
property_value: UBPROP:0000001 "The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis. Sometimes used synonymously with EVL. Le Guellec et al, 2004.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: OBO_REL:part_of ectoderm (TAO:0000016) CHANGED TO: develops_from ectoderm (UBERON:0000924)[TAO]" xsd:string
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0007383 ! enveloping layer of ectoderm
[Term]
id: UBERON:0003056
name: pre-chordal neural plate
def: "The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "anterior neural plate" RELATED []
xref: AAO:0011084
xref: TAO:0007016
xref: VHOG:0001200
xref: XAO:0000045
xref: ZFA:0007016
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: anterior_to UBERON:0009774 ! embryonic midbrain hindbrain boundary
relationship: part_of UBERON:0003075 ! neural plate
[Term]
id: UBERON:0003057
name: chordal neural plate
def: "The portion of neural plate posterior to the mid-hindbrain junction." [XB:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "posterior neural plate" RELATED []
xref: TAO:0007017
xref: VHOG:0001201
xref: XAO:0000046
xref: ZFA:0007017
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0003075 ! neural plate
relationship: posterior_to UBERON:0009774 ! embryonic midbrain hindbrain boundary
[Term]
id: UBERON:0003058
name: hypochord
def: "The hypochord is a transient rod-like structure in the embryos of fish, lampreys and amphibians that is located immediately ventral to the notochord. The hypochord may play a role in positioning the dorsal aorta[GO]. near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle[AAO]" [AAO:0000733, GO:0055016, ISBN:0815318960, PMID:10648245]
comment: Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived[ZFA]
subset: dubious_grouping
synonym: "subnotochordal rod" EXACT [GO:0055016, PMID:10648245]
xref: AAO:0000733
xref: EFO:0003475
xref: TAO:0000031
xref: VHOG:0000081
xref: XAO:0000056
xref: ZFA:0000031
property_value: UBPROP:0000001 "A transient rod-like structure which is endodermally derived and located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta. Eriksson and Lofberg, 2000.[TAO]" xsd:string
property_value: UBPROP:0000001 "Unsegmented ventral structure in the caudal region of anuran larvae; near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle.[AAO]" xsd:string
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0000925 {source="XAO"} ! endoderm
[Term]
id: UBERON:0003059
name: presomitic mesoderm
def: "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995." [ZFIN:curator]
synonym: "presumptive somite mesoderm" RELATED []
synonym: "PSM" RELATED []
synonym: "segmental plate" EXACT []
synonym: "somitogenic mesoderm" RELATED []
synonym: "unsegmented paraxial mesoderm" EXACT [UBERON:cjm]
xref: AAO:0011086
xref: EFO:0001982
xref: TAO:0000279
xref: VHOG:0000559
xref: XAO:0000057
xref: ZFA:0000279
property_value: UBPROP:0000001 "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0007282 {evidence="definitional"} ! presumptive segmental plate
relationship: part_of UBERON:0003077 ! paraxial mesoderm
[Term]
id: UBERON:0003060
name: pronephric duct
def: "In mammals, the pronephric duct is the predecessor of the Wolffian duct[WP]." [Wikipedia:Pronephric_duct]
subset: uberon_slim
synonym: "archinephric duct" RELATED [VHOG:0000082]
synonym: "ductus pronephricus" RELATED LATIN [Wikipedia:Pronephric_duct]
xref: AAO:0011088
xref: ncithesaurus:Pronephric_Duct
xref: SCTID:361406002
xref: TAO:0000150
xref: VHOG:0000082
xref: XAO:0000063
xref: ZFA:0000150
property_value: UBPROP:0000001 "Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the anal region where it empties separately from, and just posterior to the anus. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0009201 {source="GO"} ! nephric duct
relationship: develops_from UBERON:0003064 {source="Wikipedia"} ! intermediate mesoderm
relationship: develops_from UBERON:0005721 {source="XAO"} ! pronephric mesoderm
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0003061
name: blood island
def: "Blood islands are structures in the developing embryo which lead to many different parts of the circulatory system. They primarily derive from plexuses formed from angioblasts. Within them, vacuoles appear through liquefaction of the central part of the syncytium into plasma. The lumen of the blood vessels thus formed is probably intracellular. The flattened cells at the periphery form the endothelium. The nucleated red blood corpuscles develop either from small masses of the original angioblast left attached to the inner wall of the lumen or directly from the flat endothelial cells. In either case the syncytial mass thus formed projects from and is attached to the wall of the vessel. Such a mass is known as a blood island and hemoglobin gradually accumulates within it. Later the cells on the surface round up, giving the mass a mulberry-like appearance. Then the red blood cells break loose and are carried away in the plasma. Such free blood cells continue to divide. Blood islands have been seen in the area vasculosa in the omphalomesenteric vein and arteries, and in the dorsal aorta[WP]. Region located on the ventral surface of the developing embryo that is a site of hematopoiesis and that is analogous to the yolk sac blood islands of higher vertebrates[XAO]. Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension[ZFA]." [PMID:9618755, Wikipedia:Blood_island_of_umbilical_vesicle, XAO:0000067, ZFIN:curator]
comment: Note EHDAA2 distinguishes 3 types - we opt for the mesoderm one
subset: uberon_slim
subset: vertebrate_core
synonym: "blood island of umbilical vesicle" EXACT [Wikipedia:Blood_island]
synonym: "blood islands" EXACT PLURAL []
synonym: "caudal hematopoietic tissue" RELATED []
synonym: "insula sanguinea vesiculae umbilicalis" EXACT [Wikipedia:Blood_island]
synonym: "mesoderm blood islands" EXACT [EHDAA2:0003241]
synonym: "posterior blood island" RELATED []
synonym: "posterior ICM" RELATED []
synonym: "VBI" RELATED []
synonym: "ventral blood island" RELATED []
synonym: "ventral lateral plate mesoderm" BROAD []
xref: AAO:0011006
xref: EFO:0003489
xref: EHDAA2:0003241
xref: ncithesaurus:Blood_Island
xref: TAO:0000094
xref: TE:E5.11.2.0.0.0.4
xref: VHOG:0000085
xref: XAO:0000067
xref: ZFA:0000094
property_value: UBPROP:0000001 "Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000001 "Region located on the ventral surface of the developing embryo that is a site of hematopoiesis and that is analogous to the yolk sac blood islands of higher vertebrates.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of intermediate cell mass of mesoderm (TAO:0000033)[TAO]" xsd:string
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003081 ! lateral plate mesoderm
relationship: develops_into UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003062
name: primitive knot
alt_id: UBERON:0004018
def: "organizer for gastrulation in vertebrates. The primitive knot starts as a regional knot of cells that forms on the blastodisc immediately anterior to where the outer layer of cells will begin to migrate inwards - an area known as the primitive streak. Posterior to the node is the primitive pit, where the cells of the epiblast (the upper layer of embryonic cells) initially begin to invaginate. This invagination expands posteriorly into the primitive groove as the cells layers continue to move into the space between the embryonic cells and the yolk. This differentiates the embryo into the germ layers - endoderm, mesoderm, and ectoderm. The primitive knot migrates posteriorly as gastrulation proceeds, eventually being absorbed into the tail bud.[WP]. the regional thickening of cells at the rostral tip of the vertebrate primitive streak through which gastrulating cells migrate anteriorally to form tissues in the future head and neck; this region organizes the formation of the three embryonic layers and establishes the longitudinal axis and the polarity of the embryo[MP]." [MP:0004066, Wikipedia:Primitive_knot, Wikipedia:Regional_specification#Dorsal.2Fventral_axis_.26_organizer]
comment: This class groups together possibly disparate structures, following homology class in vHOG; early development terms need review
subset: early_development
subset: uberon_slim
synonym: "DMZ" RELATED [VHOG:0000598]
synonym: "dorsal marginal zone" RELATED [XAO:0000072]
synonym: "embryo organizer" EXACT [GAID:1312]
synonym: "embryonic organizer" EXACT [GAID:1312]
synonym: "embryonic shield" EXACT [http://zfin.org/zf_info/zfbook/stages/gast.html]
synonym: "Hensen node" EXACT SENSU [GAID:1312, Wikipedia:Primitive_knot]
synonym: "Hensen's node" EXACT SENSU [GAID:1312, Wikipedia:Primitive_knot]
synonym: "node" BROAD [EMAPA:16075]
synonym: "nodus primitivus" RELATED LATIN [Wikipedia:Primitive_knot]
synonym: "organizer" EXACT [ZFA:0000071]
synonym: "primitive node" EXACT [Wikipedia:Primitive_knot]
synonym: "shield" EXACT [ZFA:0000071]
synonym: "Spemann Mangold organizer" EXACT SENSU [ZFA:0000071]
synonym: "Spemann's organizer" EXACT SENSU [ZFA:0000071]
xref: AAO:0000346
xref: BILA:0000053
xref: BTO:0003395
xref: EHDAA2:0001272
xref: EHDAA:549
xref: EMAPA:16075
xref: GAID:1312
xref: MESH:A.16.254.650
xref: ncithesaurus:Primitive_Node
xref: SCTID:361464001
xref: TAO:0000071
xref: VHOG:0000598
xref: XAO:0000072
xref: ZFA:0000071
property_value: UBPROP:0000001 "A signaling center that directs the development of the whole embryo or of part of the embryo.[AAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance
relationship: develops_from UBERON:0007283 {evidence="definitional"} ! presumptive shield
relationship: part_of UBERON:0002541 {source="ZFA"} ! germ ring
relationship: part_of UBERON:0004341 {source="EHDAA"} ! primitive streak
[Term]
id: UBERON:0003063
name: prechordal plate
alt_id: UBERON:0004881
def: "a thickening of the endoderm at the cranial end of the primitive streak formed by the involution of Spemann's organizer cells. The prechordal plate and the notochord induce the formation of the neural plate from the overlying ectodermal cells[GO]. Axial hypoblast located anterior to the chordamesoderm; the polster is its most anterior region[ZFA]. Uniquely thickened portion of the endoderm that is in contact with ectoderm immediately rostral to the cephalic tip of the notochord[WP]." [Wikipedia:Prechordal_plate, ZFIN:curator]
comment: todo - check; developmental relationship to anterior hypoblast in ZFA?
subset: uberon_slim
subset: vertebrate_core
synonym: "head mesenchyme" BROAD [XAO:0000079]
synonym: "head mesoderm" BROAD [XAO:0000079]
xref: AAO:0011085
xref: EHDAA2:0001493
xref: EHDAA:181
xref: TAO:0000060
xref: VHOG:0000086
xref: XAO:0000079
xref: ZFA:0000060
property_value: UBPROP:0000001 "Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0003068 {source="ZFA"} ! axial mesoderm
[Term]
id: UBERON:0003064
name: intermediate mesoderm
def: "The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:curators, Wikipedia:Intermediate_mesoderm]
comment: note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm').
subset: uberon_slim
subset: vertebrate_core
synonym: "IM" RELATED []
synonym: "intermediate mesenchyme" RELATED [UBERONREF:0000002]
synonym: "intermediate plate mesoderm" RELATED [UBERON:cjm]
synonym: "mesenchyma intermedium" RELATED LATIN [Wikipedia:Intermediate_mesoderm]
xref: AAO:0010575
xref: EMAPA:16178
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: ncithesaurus:Intermediate_Mesoderm
xref: SCTID:361476001
xref: TAO:0001206
xref: VHOG:0000087
xref: XAO:0000085
xref: ZFA:0001206
property_value: UBPROP:0000001 "Mesoderm between somite and lateral plate. Traditionally thought to give rise to the urogenital system.[AAO]" xsd:string
is_a: UBERON:0005423 ! developing anatomical structure
relationship: adjacent_to UBERON:0003077 ! paraxial mesoderm
relationship: adjacent_to UBERON:0003081 ! lateral plate mesoderm
relationship: develops_from UBERON:0000926 {source="XAO"} ! mesoderm
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000926 {source="AAO"} ! mesoderm
relationship: part_of UBERON:0005256 {source="EMAPA"} ! trunk mesenchyme
[Term]
id: UBERON:0003065
name: ciliary marginal zone
def: "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. Wehman et al, 2005." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "circumferential germinal zone" RELATED []
synonym: "CMZ" RELATED []
synonym: "peripheral growth zone" EXACT [ZFA:0001289]
xref: AAO:0010342
xref: EFO:0003668
xref: TAO:0001289
xref: VHOG:0000088
xref: XAO:0000086
xref: ZFA:0001289
property_value: UBPROP:0000001 "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. Wehman et al, 2005.[TAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0003066
name: pharyngeal arch 2
def: "assists in forming the side and front of the neck." [Wikipedia:Second_pharyngeal_arch]
comment: In XAO, develops from visceral pouch 2
subset: uberon_slim
subset: vertebrate_core
synonym: "2nd arch" RELATED [EHDAA2:0000050]
synonym: "2nd pharyngeal arch" EXACT []
synonym: "arcus pharyngeus secundus" EXACT LATIN [Wikipedia:Second_pharyngeal_arch]
synonym: "branchial arch 2" EXACT SENSU []
synonym: "hyoid arch" EXACT [XAO:0000098]
synonym: "hyoid bars" RELATED []
synonym: "pharyngeal arch 2" EXACT []
synonym: "second branchial arch" EXACT SENSU []
synonym: "second pharyngeal arch" EXACT []
synonym: "second visceral arch" EXACT SENSU []
synonym: "visceral arch 2" EXACT SENSU []
xref: AAO:0010363
xref: EHDAA2:0000050
xref: EHDAA:611
xref: EMAPA:16272
xref: http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray41.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray41.png/200px-Gray41.png
xref: ncithesaurus:Second_Pharyngeal_Arch
xref: SCTID:308768003
xref: TAO:0001596
xref: VHOG:0000297
xref: XAO:0000098
xref: ZFA:0001611
property_value: "pharyngeal_arch_number" "2" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "The second of the series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO]" xsd:string
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003067
name: dorsolateral placode
def: "Lateral neurogenic placodes positioned dorsal of the epibranchial placodes." [ZFIN:curator]
synonym: "dorsolateral placodes" EXACT PLURAL [ZFA:0001310]
xref: TAO:0001310
xref: VHOG:0000103
xref: XAO:0000187
xref: ZFA:0001310
is_a: UBERON:0009955 {source="NBK53175"} ! neurogenic placode
relationship: dorsal_to UBERON:0003078 ! epibranchial placode
[Term]
id: UBERON:0003068
name: axial mesoderm
def: "The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [GO:0048318, Wikipedia:Chordamesoderm]
subset: uberon_slim
synonym: "chordamesoderm" RELATED [Wikipedia:Chordamesoderm]
xref: AAO:0011017
xref: EFO:0003647
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: TAO:0001204
xref: VHOG:0000107
xref: XAO:0000205
xref: ZFA:0001204
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003069
name: otic placode
def: "A cranial placode which, once specified, invaginates to form an otic cup, which eventually separates from the surface ectoderm to form the otic vesicle or otocyst, a rounded structure without appar- ent polarity. As the otic placode invaginates into a cup neuroblasts delaminate from the anterior ventral aspect of the otic epithelium to give rise to neurons of the vestibulocochlear (statoacoustic) ganglion of cranial nerve VIII" [NBK:NBK53175]
comment: With the exception of the pigment cells of the stria vascularis and the secretory epithelium of the cochlea, which are of neural crest origin, all compo- nents of the inner ear derive from the otic placode. In most species the thickening of the ectoderm into a placode occurs in a region adjacent to rhombomere 5 (reviewed in Ohyama et al., 2007), while in amphibians the otic placode is centered onto rhombomere 4 (Ruiz i Altaba and Jessell, 1991).[NBK53175]
subset: uberon_slim
subset: vertebrate_core
synonym: "auditory placode" RELATED []
synonym: "ear placode" RELATED []
synonym: "ear/otic placode" RELATED []
xref: AAO:0011079
xref: EFO:0003429
xref: EHDAA2:0001339
xref: EHDAA:506
xref: EMAPA:16195
xref: ncithesaurus:Otic_Placodes
xref: TAO:0000138
xref: VHOG:0000235
xref: XAO:0000223
xref: ZFA:0000138
property_value: UBPROP:0000001 "Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the midsegmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string
is_a: UBERON:0003067 ! dorsolateral placode
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0003070
name: trigeminal placode
def: "The ectodermal rudiment of the trigeminal ganglion." [VHOG:0000109]
comment: This class was created automatically from a combination of ontologies
xref: EFO:0003433
xref: EHDAA2:0004209
xref: TAO:0000162
xref: VHOG:0000109
xref: XAO:0000225
xref: ZFA:0000162
property_value: UBPROP:0000001 "The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0003067 ! dorsolateral placode
relationship: develops_from UBERON:0003067 ! dorsolateral placode
[Term]
id: UBERON:0003071
name: eye primordium
alt_id: UBERON:0005060
def: "Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570]
comment: AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium
synonym: "eye anlage" RELATED [XAO:0000227]
synonym: "eye field" RELATED []
synonym: "eye placode" EXACT [OBOL:automatic]
synonym: "occular primordium" EXACT []
synonym: "ocular primordium" EXACT []
synonym: "optic field" RELATED []
synonym: "optic placode" EXACT [GO:0046619]
synonym: "optic placode of camera-type eye" EXACT [GO:0046619, UBERON:cjm]
synonym: "optic primordium" EXACT []
xref: AAO:0011038
xref: EFO:0003541
xref: EHDAA2:0004431
xref: TAO:0000570
xref: XAO:0000227
xref: XAO:0004090
xref: ZFA:0000570
is_a: UBERON:0005085 ! ectodermal placode
relationship: develops_into UBERON:0000019
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0000019 ! camera-type eye
relationship: develops_from UBERON:0003056 ! pre-chordal neural plate
relationship: develops_into UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0003056 {source="PMID:16496288", source="XAO"} ! pre-chordal neural plate
[Term]
id: UBERON:0003072
name: optic cup
def: "Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]." [MP:0004269, Optic_cup_(embryology), ZFA:0001202]
subset: vertebrate_core
synonym: "eye cup" RELATED []
xref: EHDAA2:0001303
xref: EHDAA:2912
xref: EMAPA:16674
xref: ncithesaurus:Optic_Cup
xref: SCTID:308789007
xref: TAO:0001202
xref: VHOG:0000167
xref: ZFA:0001202
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0004128 {source="ZFA"} ! optic vesicle
relationship: induced_by UBERON:0003073 ! lens placode
relationship: part_of UBERON:0010312 {source="ZFA"} ! immature eye
[Term]
id: UBERON:0003073
name: lens placode
def: "A thickened portion of ectoderm which serves as the precursor to the lens. SOX2 and Pou2f1 are involved in its development[WP]." [Wikipedia:Lens_placode, ZFIN:curator]
comment: Classical transplantation experiments using amphibian embryos suggested that the optic vesicle is the source of lens-inducing signals sufficient to generate lens tissues in competent ectoderm (reviewed in Grainger et al., 1996). More recent findings suggest a multistep model for lens induction. There is now good evidence that lens specification occurs at the neurula stage, before the optic vesicle contact the surface ectoderm, and that neural crest cell migration in the frontonasal region is required to restrict the position of the lens placode (Bailey et al., 2006)[NBK53175]
subset: uberon_slim
subset: vertebrate_core
synonym: "placoda lentis" RELATED LATIN [Wikipedia:Lens_placode]
xref: AAO:0011055
xref: EFO:0003494
xref: EHDAA2:0000982
xref: EHDAA:2908
xref: EMAPA:16672
xref: http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray864.png
xref: ncithesaurus:Lens_Placodes
xref: TAO:0000122
xref: VHOG:0000166
xref: XAO:0000240
xref: ZFA:0000122
property_value: UBPROP:0000001 "Ectodermal primordium of the lens of the eye. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0002546 {source="NBK53175", note="non-neurogenic"} ! cranial placode
is_a: UBERON:0010312 ! immature eye
relationship: develops_into UBERON:0000965
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0000965 ! lens of camera-type eye
relationship: develops_into UBERON:0000965 ! lens of camera-type eye
relationship: induced_by UBERON:0004128 ! optic vesicle
relationship: part_of UBERON:0000076 ! external ectoderm
relationship: part_of UBERON:0010312 {source="ZFA"} ! immature eye
[Term]
id: UBERON:0003074
name: mesonephric duct
def: "Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros[WP]. In Zebrafish: Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber[ZFA]." [Wikipedia:Mesonephric_duct, ZFIN:curator]
comment: TODO - mesonephric portion of the nephric duct. Development notes: In the male the Wolffian duct persists, and forms for example the epididymis, the ductus deferens, the ejaculatory duct, seminal vesicle and efferent ducts.
subset: uberon_slim
subset: vertebrate_core
synonym: "archinephric duct" RELATED [VHOG:0000082, Wikipedia:Wolffian_duct]
synonym: "ductus mesonephricus; ductus Wolffi" RELATED LATIN [Wikipedia:Mesonephric_duct]
synonym: "Leydig's duct" RELATED [Wikipedia:Wolffian_duct]
synonym: "renal duct" RELATED []
synonym: "Wolffian duct" EXACT [GOC:yaf, Wikipedia:Wolffian_duct, ZFA:0000546]
xref: AAO:0000637
xref: EHDAA2:0001243
xref: EHDAA:1590
xref: EMAPA:16577
xref: GAID:1315
xref: http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png
xref: MESH:A.16.254.940
xref: ncithesaurus:Mesonephric_Duct
xref: SCTID:308800003
xref: TAO:0000546
xref: VHOG:0000082
xref: XAO:0000242
xref: ZFA:0000546
property_value: UBPROP:0000001 "Anatomical structure consisting of either of a pair of longitudinal ducts which carry urine and in males, sperm, to the cloaca.[AAO]" xsd:string
is_a: UBERON:0000083 ! mesonephric tubule
is_a: UBERON:0009201 {source="GO"} ! nephric duct
relationship: develops_from UBERON:0003060 ! pronephric duct
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0003075
name: neural plate
def: "A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube[XAO]. The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium[ZFA]" [ISBN:0815318960, OMD:neural+plate, Wikipedia:Neural_plate, ZFIN:curator]
subset: uberon_slim
subset: vertebrate_core
synonym: "lamina neuralis" RELATED LATIN [Wikipedia:Neural_plate]
synonym: "presumptive central nervous system" RELATED []
xref: AAO:0011072
xref: BTO:0001765
xref: EHDAA:346
xref: EHDAA:902
xref: EMAPA:16095
xref: EMAPA:16527
xref: EMAPA:16756
xref: http://upload.wikimedia.org/wikipedia/commons/8/8f/Neural_Crest.png
xref: ncithesaurus:Neural_Plate
xref: RETIRED_EHDAA2:0001252
xref: TAO:0000132
xref: VHOG:0000068
xref: XAO:0000249
xref: ZFA:0000132
property_value: UBPROP:0000001 "The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0002346 ! neurectoderm
relationship: develops_from UBERON:0007284 {source="ZFA"} ! presumptive neural plate
relationship: induced_by UBERON:0002328 {source="Wikipedia"} ! notochord
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002346 {source="XAO"} ! neurectoderm
[Term]
id: UBERON:0003076
name: posterior neural tube
comment: This class was created automatically from a combination of ontologies
xref: AAO:0011082
xref: TAO:0007037
xref: VHOG:0001383
xref: XAO:0000250
xref: ZFA:0007037
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003057 ! chordal neural plate
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0003077
name: paraxial mesoderm
def: "The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]" [GO:0048339, Wikipedia:Paraxial_mesoderm]
comment: AO notes: note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). Also in ZFA it is part of the trunk whereas this conflicts with the division into head and trunk in ehdaa2 (which we follow here)
subset: uberon_slim
subset: vertebrate_core
synonym: "mesoderma paraxiale" RELATED LATIN [Wikipedia:Paraxial_mesoderm]
synonym: "paraxial mesenchyme" EXACT [UBERONREF:0000002, ZFA:0000255]
synonym: "somitic mesoderm" EXACT [ISBN:9780878932504]
xref: AAO:0010568
xref: EFO:0003515
xref: EMAPA:16183
xref: EMAPA:16751
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: ncithesaurus:Paraxial_Mesoderm
xref: SCTID:361475002
xref: TAO:0000255
xref: VHOG:0000114
xref: XAO:0000259
xref: ZFA:0000255
property_value: UBPROP:0000001 "Mesoderm lateral to the neural tube and notochord that is divided into cranial and post-cranial portions. The trunk portions further segment into somites.[AAO]" xsd:string
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
relationship: develops_from UBERON:0007285 {source="ZFA"} ! presumptive paraxial mesoderm
relationship: part_of UBERON:0000926 {source="XAO"} ! mesoderm
[Term]
id: UBERON:0003078
name: epibranchial placode
def: "Neurogenic placodes that generate neurons of the distal facial, glossopharyngeal and vagal ganglia, which convey sensation from the viscera, including pharyngeal endoderm structures, to the CNS. The epibranchial placodes are positioned ventrally to the ear/otic placode and dorsally to the posterior pharyngeal pouches/clefts" [ZFIN:ZDB-PUB-050804-2, ZFIN:ZDB-PUB-070122-31]
comment: Epibranchial placodes-derived neu- rons innervate internal organs to transmit information such as heart rate, blood pressure, and visceral distension from the periphery to the central nervous system (Baker and Bronner-Fraser, 2001). From rostral to caudal the epibranchial placodes comprise the geniculate, petrosal, and nodose placodes, each associated in sequence with the first, second and third branchial clefts. Each placode contributes sensory neurons to cranial nerves VII (facial nerve), IX (glossopharyngeal nerve), and X (vagal nerve), respectively[NBK53175]
synonym: "epibranchial placodes" EXACT PLURAL [ZFA:0001294]
xref: AAO:0011036
xref: EFO:0003455
xref: TAO:0001294
xref: VHOG:0000117
xref: XAO:0000284
xref: ZFA:0001294
is_a: UBERON:0009955 {source="NBK53175"} ! neurogenic placode
relationship: develops_from UBERON:0003067 ! dorsolateral placode
relationship: part_of UBERON:0000010 ! peripheral nervous system
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003079
name: floor plate
def: " A ventral region of glial cells in the neural tube that provides inductive signals for the specification of neuronal cell types. The floor plate is evident at the ventral midline by the neural fold stage[GO]. A structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube[WP]." [GO:0021508, PMID:15738958, Wikipedia:Floor_plate]
comment: Note that although this is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. Consider 'floor plate of neural tube'.
subset: uberon_slim
subset: vertebrate_core
synonym: "bodenplatte" RELATED [BTO:0001720]
synonym: "flexural organ" RELATED []
synonym: "floorplate" EXACT []
synonym: "ventral plate" RELATED [BTO:0001720]
xref: AAO:0011041
xref: BTO:0001720
xref: EFO:0003473
xref: http://upload.wikimedia.org/wikipedia/commons/8/89/Gray642.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Gray642.png/200px-Gray642.png
xref: RETIRED_EHDAA2:0000545
xref: TAO:0000022
xref: ZFA:0000022
property_value: UBPROP:0000001 "Organizing center consisting of a small group of cells located at the ventral midline of the neural tube that influences the development of the nervous system, governing the specification of neuronal cell types and directing axonal trajectories.[AAO]" xsd:string
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0002328 {source="Wikipedia"} ! notochord
relationship: develops_from UBERON:0007286 {source="ZFA"} ! presumptive floor plate
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0003080
name: anterior neural tube
comment: editor note: TODO - add grouping class for the anterior end of the neural tube at all stages
xref: AAO:0011012
xref: TAO:0007038
xref: VHOG:0001384
xref: XAO:0000307
xref: ZFA:0007038
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003056 ! pre-chordal neural plate
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0003081
name: lateral plate mesoderm
def: "Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." [MP:0010117, Wikipedia:Lateral_plate_mesoderm]
subset: uberon_slim
synonym: "lateral mesoderm" EXACT [GO:0048368]
synonym: "lateral plate" RELATED []
synonym: "mesoderma laminae lateralis" RELATED LATIN [Wikipedia:Lateral_plate_mesoderm]
xref: AAO:0010574
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: ncithesaurus:Lateral_Mesoderm
xref: SCTID:361477005
xref: TAO:0000121
xref: VHOG:0000118
xref: XAO:0000311
xref: ZFA:0000121
property_value: UBPROP:0000001 "Portion of mesoderm traditionally thought to give rise to limb bones and parts of the girdles.[AAO]" xsd:string
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0000926 ! mesoderm
relationship: surrounds UBERON:0003887 ! intraembryonic coelom
[Term]
id: UBERON:0003082
name: myotome
def: "A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator]
comment: Editors note: The term "myotome" is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class.
subset: uberon_slim
subset: vertebrate_core
synonym: "muscle plate" RELATED []
synonym: "myomere" RELATED []
synonym: "myotome region" RELATED []
synonym: "myotomes" RELATED []
synonym: "myotomus" RELATED LATIN [Wikipedia:Myotome]
xref: AAO:0011067
xref: BTO:0000742
xref: EHDAA2:0003431
xref: EHDAA:1721
xref: EHDAA:1727
xref: EHDAA:1733
xref: EHDAA:1739
xref: http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png
xref: ncithesaurus:Myotome_Region
xref: SCTID:344535001
xref: TAO:0001056
xref: VHOG:0001244
xref: XAO:0000315
xref: ZFA:0001056
property_value: UBPROP:0000001 "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0004290 {source="EHDAA2"} ! dermomyotome
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003083
name: trunk neural crest
def: "Trunk portion of the neural crest. The trunk neural crest lies between the vagal and sacral neural crest and gives rise to two groups of cells. One group migrates dorsolateral and populates the skin, forming pigment cells and the other migrates ventrolateral through the anterior sclerotome to become the epinephrine-producing cells of the adrenal gland and the neurons of the sympathetic nervous system. Some cells remain in the sclerotome to form the dorsal root ganglia [Wikipedia]." [ISBN:0815318960, Wikipedia:Trunk_neural_crest]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "trunk crest" RELATED []
xref: AAO:0010582
xref: EFO:0003605
xref: EHDAA2:0001901
xref: TAO:0001024
xref: VHOG:0000062
xref: XAO:0000319
xref: ZFA:0001024
property_value: UBPROP:0000001 "Post-cranial portion of the neural crest. Exact anatomical derivations not experimentally resolved in amphibians.[AAO]" xsd:string
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003084
name: heart primordium
def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline to form the heart rudiment or cone." [ZFIN:curator]
comment: editor note: should probably be fused with heart rudiment.
subset: uberon_slim
synonym: "fused heart primordium" RELATED []
xref: AAO:0011044
xref: BTO:0001887
xref: ncithesaurus:Primordium_of_the_Heart
xref: TAO:0000028
xref: XAO:0000336
xref: ZFA:0000028
property_value: UBPROP:0000001 "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001.[TAO]" xsd:string
property_value: UBPROP:0000001 "The fused aspects of ventral mesoderm, which have migrated from either side of the prechordal plate, and fused ventrally, just behind the cement gland. They will give rise to the endocardium at NF stage 27&28.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from lateral mesoderm (TAO:0001065)[TAO]" xsd:string
is_a: UBERON:0001048 {source="Obol"} ! primordium
relationship: develops_from UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm
relationship: develops_from UBERON:0004140 ! heart field
relationship: develops_from UBERON:0007005 {source="XAO"} ! cardiac mesoderm
relationship: part_of UBERON:0004535 {source="ZFA"} ! cardiovascular system
[Term]
id: UBERON:0003085
name: ventral aorta
def: "The artery in vertebrate embryos that carries blood from the ventricle of the heart to the aortic arches. In adult fish it branches into afferent branchial arteries supplying the gills. In adult tetrapods it is represented by the ascending part of the aorta[BTO]. The ventral aorta is a blood vessel in a single-pass circulatory system that carries de-oxygenated blood from the heart to the gills. In a single-pass circulatory system blood passes once through the heart to supply the body once[GO]." [BTO:0004674, GO:0035908]
comment: Taxon notes (via vHOG): "When vertebrates first appeared, they must have possessed a ventral and dorsal aorta with aortic arches between them." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.620. // in Reptiles, splits to form bases of 3 arteries: left aortic arch, right aortic arch and pulmonary trunk. In birds, the right systemic arch becomes predominant, the left never fully develops [Kardong]
subset: uberon_slim
xref: AAO:0010412
xref: BTO:0004674
xref: TAO:0000604
xref: VHOG:0000121
xref: XAO:0000338
xref: ZFA:0000604
property_value: "homologous_to" UBERON:0001496
property_value: UBPROP:0000001 "Outflow artery from the heart to the aortic arches. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0000947 ! aorta
relationship: channels_from UBERON:0000948 ! heart
[Term]
id: UBERON:0003086
name: caudal artery
def: "Extension of the dorsal aorta in the tail. Kimmel et al, 1995." [Wikipedia:Caudal_artery, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CA" RELATED []
xref: AAO:0011023
xref: EFO:0003472
xref: TAO:0000011
xref: VHOG:0000123
xref: XAO:0000364
xref: ZFA:0000011
property_value: UBPROP:0000001 "Extension of the dorsal aorta in the tail. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000001 "The posterior extension of the dorsal aorta to the tail region, which degenerates at metamorphosis.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of axial vasculature (TAO:0001073)[TAO]" xsd:string
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0003087
name: anterior cardinal vein
def: "the two paired veins draining the cephalic part of the body." [MP:0004784]
comment: This class was created automatically from a combination of ontologies
subset: vertebrate_core
synonym: "ACV" RELATED []
synonym: "rostral cardinal vein" EXACT [ZFA:0000423]
synonym: "rostral cardinal veins" RELATED []
xref: AAO:0011011
xref: BTO:0004387
xref: EHDAA:1312
xref: EMAPA:16355
xref: ncithesaurus:Anterior_Cardinal_Vein
xref: SCTID:308780006
xref: TAO:0000423
xref: VHOG:0000113
xref: XAO:0000383
xref: ZFA:0000423
property_value: UBPROP:0000001 "The anterior cardinal vein returns blood from the dorsal head and drains into the duct of Cuvier via the pronephric sinus.[AAO]" xsd:string
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003088
name: caudal vein
def: "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CV" RELATED []
xref: AAO:0011025
xref: EFO:0003616
xref: ncithesaurus:Caudal_Vein
xref: TAO:0000180
xref: VHOG:0000126
xref: XAO:0000390
xref: ZFA:0000180
property_value: UBPROP:0000001 "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from caudal vein plexus (TAO:0001286)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of axial vasculature (TAO:0001073)[TAO]" xsd:string
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003089
name: sclerotome
def: "Ventral somitic compartment that is a precursor of the axial skeleton[XAO]. Sclerotomes eventually differentiate into the vertebrae and most of the skull. The caudal (posterior) half of one sclerotome fuses with the rostral (anterior) half of the adjacent one to form each vertebra. From their initial location within the somite, the sclerotome cells migrate medially towards the notochord. These cells meet the sclerotome cells from the other side to form the vertebral body. From this vertebral body, sclerotome cells move dorsally and surround the developing spinal cord, forming the vertebral arch[WP]." [Wikipedia:Sclerotome, XB:curator]
comment: AO notes: part_of somite in XAO
subset: uberon_slim
subset: vertebrate_core
synonym: "sclerotomus" RELATED LATIN [Wikipedia:Sclerotome]
xref: AAO:0010571
xref: AEO:0000212
xref: EHDAA2:0003439
xref: http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png
xref: ncithesaurus:Sclerotome
xref: TAO:0001080
xref: VHOG:0000680
xref: XAO:0000397
xref: ZFA:0001080
property_value: UBPROP:0000001 "Skeletogenic portion of somites.[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005856 {source="EHDAA2"} ! developing mesenchymal condensation
is_a: UBERON:0007530 {source="EHDAA2"} ! migrating mesenchyme population
relationship: develops_from UBERON:0002329 {source="ZFA"} ! somite
[Term]
id: UBERON:0003090
name: supraorbital lateral line
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "supraorbital line" EXACT [ZFA:0000443]
xref: AAO:0011103
xref: TAO:0000443
xref: VHOG:0000128
xref: XAO:0000442
xref: ZFA:0000443
property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of anterior lateral line (TAO:0001470)[TAO]" xsd:string
is_a: UBERON:0010202 ! lateral line
[Term]
id: UBERON:0003091
name: thyroid primordium
def: "The initial thyroid precursor, the thyroid primordium, starts as a simple midline thickening and develops to form the thyroid diverticulum. This structure is initially hollow, although it later solidifies and becomes bilobed. The 2 lobes are located on either side of the midline and are connected via an isthmus." [http://emedicine.medscape.com/article/845125-overview]
comment: In all vertebrates the thyroid arises from the ventral aspect of the second pouch[PMID:16313389]. Note that we follow EHDAA2 in dividing this into endoderm and mesenchyme. In this ontology we place the broad developmental relationship at this level, and include specific relationships to the pharyngeal endoderm at the level of the endoderm
subset: vertebrate_core
xref: AAO:0011106
xref: BTO:0004709
xref: EHDAA2:0002033
xref: EHDAA:952
xref: EMAPA:16361
xref: EMAPA:16558
xref: ncithesaurus:Thyroid_Primordium
xref: TAO:0001081
xref: XAO:0000444
xref: ZFA:0001081
is_a: UBERON:0000479 {source="ZFA"} ! tissue
is_a: UBERON:0001048 ! primordium
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0007123 {source="ISBN10:0073040584", source="PMID:16313389"} ! pharyngeal pouch 2
relationship: part_of UBERON:0000949 {source="ZFA"} ! endocrine system
[Term]
id: UBERON:0003092
name: ultimobranchial body
def: "Pharyngeal pouch derivative, usually paired cell masses located in the neck region[Kardong]. The ultimobranchial body or gland is a small organ found in the neck region of many animals. In humans, the ultimobranchial body is an embryological structure that gives rise to the calcitonin-producing cells—also called parafollicular cells or clear cells—of the thyroid gland. In humans, this body is a derivative of the ventral recess of the fourth pharyngeal pouch (or fifth) [WP,unvetted]. The ultimobranchial bodies of lower vertebrates contain large amounts of calcitonin. In mammals the bodies fuse with the thyroid gland and are thought to develop into the parafollicular cells. (Stedman, 25th ed)" [ISBN10:0073040584, MESH:A.13.939, Wikipedia:Ultimopharyngeal_body]
comment: Developmental origins vary across species. PMID:16313389 says: the most posterior pouch generates the ultimobranchial bodies in most vertebrate classes, but mammals do not contain this structure // The neural crest is the source of ultimobranchial cells[Kardong]. WP says pouch 4, but this isn't supported by Kardong (table 13.1 or fig 15.5). EHDAA2 says 6th arch mesenchyme
subset: uberon_slim
subset: vertebrate_core
synonym: "corpus ultimopharyngeum" EXACT [Wikipedia:Ultimobranchial_body]
synonym: "postbranchial body" RELATED [Wikipedia:Ultimobranchial_body]
synonym: "ultimobranchial" RELATED [Wikipedia:Ultimobranchial_body]
synonym: "ultimobranchial bodies" RELATED PLURAL [Wikipedia:Ultimobranchial_body]
synonym: "ultimobranchial gland" EXACT [Wikipedia:Ultimobranchial_body]
synonym: "ultimopharyngeal body" EXACT [Wikipedia:Ultimobranchial_body]
synonym: "ultimopharyngeal gland" EXACT [Wikipedia:Ultimobranchial_body]
xref: AAO:0010547
xref: EHDAA2:0002103
xref: EHDAA:2987
xref: EHDAA:9139
xref: GAID:1246
xref: MESH:A.13.939
xref: SCTID:345552007
xref: TAO:0001448
xref: VHOG:0001185
xref: XAO:0000452
xref: ZFA:0001448
property_value: UBPROP:0000001 "Anatomical structure which includes small, calcitonin producing glands originating as epithelial growths from the sixth pharyngeal pouch.[AAO]" xsd:string
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003117 {source="XAO"} ! pharyngeal arch 6
relationship: develops_from UBERON:0004117 {source="ISBN10:0073040584"} ! pharyngeal pouch
relationship: develops_from UBERON:0007126 {source="ISBN10:0073040584", source="Wikipedia"} ! pharyngeal pouch 5
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0003093
name: occipital lateral line
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "supratemporal lateral line" RELATED []
xref: AAO:0011075
xref: TAO:0000400
xref: VHOG:0000131
xref: XAO:0000458
xref: ZFA:0000400
property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of anterior lateral line (TAO:0001470)[TAO]" xsd:string
is_a: UBERON:0010202 ! lateral line
[Term]
id: UBERON:0003094
name: infraorbital lateral line
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "infraorbital line" EXACT [ZFA:0000524]
xref: AAO:0011053
xref: TAO:0000524
xref: VHOG:0000132
xref: XAO:0000459
xref: ZFA:0000524
property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of anterior lateral line (TAO:0001470)[TAO]" xsd:string
is_a: UBERON:0010202 ! lateral line
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0003095
name: dorsal lateral line
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0011030
xref: TAO:0005112
xref: VHOG:0001677
xref: XAO:0000462
xref: ZFA:0005112
property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of posterior lateral line system (TAO:0001471)[TAO]" xsd:string
is_a: UBERON:0010202 ! lateral line
[Term]
id: UBERON:0003096
name: middle lateral line
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: TAO:0000344
xref: VHOG:0000133
xref: XAO:0000463
xref: ZFA:0000344
property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from middle lateral line primordium (TAO:0005118)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of anterior lateral line (TAO:0001470)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of middle lateral line system (TAO:0005114)[TAO]" xsd:string
is_a: UBERON:0010202 ! lateral line
[Term]
id: UBERON:0003097
name: dorsal fin
def: "Median fin located on the dorsal surface of the organism." [VSAO:0000165, Wikipedia:Dorsal_fin]
subset: uberon_slim
xref: AAO:0010378
xref: BTO:0004650
xref: OpenCyc:Mx4rvVjbzZwpEbGdrcN5Y29ycA
xref: TAO:0001173
xref: VSAO:0000165
xref: XAO:0000469
xref: ZFA:0001173
is_a: UBERON:0008897 ! fin
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0003083 ! trunk neural crest
[Term]
id: UBERON:0003098
name: optic stalk
def: "The optic vesicles project toward the sides of the head, and the peripheral part of each expands to form a hollow bulb, while the proximal part remains narrow and constitutes the optic stalk. [WP,unvetted]." [Wikipedia:Optic_stalk]
subset: uberon_slim
subset: vertebrate_core
synonym: "pedunculus opticus" RELATED LATIN [Wikipedia:Optic_stalk]
xref: AAO:0011077
xref: EHDAA2:0001318
xref: EHDAA:3816
xref: EMAPA:16678
xref: http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray864.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray864.png/200px-Gray864.png
xref: ncithesaurus:Optic_Stalk
xref: SCTID:308788004
xref: TAO:0000137
xref: VHOG:0000223
xref: XAO:0000475
xref: ZFA:0000137
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0003072 ! optic cup
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003099
name: cranial neural crest
def: "The cranial neural crest arises in the anterior and populates the face and the pharyngeal arches giving rise to bones, cartilage, nerves and connective tissue [Wikipedia]." [Wikipedia:Cranial_neural_crest, ZFA:0001194, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
subset: vertebrate_core
synonym: "cephalic neural crest" RELATED [EMAPA:16091]
synonym: "crista neuralis cranialis" RELATED LATIN [Wikipedia:Cranial_neural_crest]
synonym: "head crest" RELATED []
synonym: "head neural crest" RELATED []
xref: AAO:0010580
xref: EFO:0003645
xref: EHDAA2:0004420
xref: EMAPA:16091
xref: TAO:0001194
xref: VHOG:0000063
xref: XAO:0001001
xref: ZFA:0001194
property_value: UBPROP:0000001 "Anterior most portion of the neural crest. Migrates in three highly conserved streams: mandibular, hyoid and branchial.[AAO]" xsd:string
property_value: UBPROP:0000001 "Neural crest that is part of the head.[TAO]" xsd:string
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003100
name: female organism
def: "Gonochoristic organism that can produce female gametes." [CARO:0000028]
subset: vertebrate_core
synonym: "female" RELATED [TAO:0000303]
synonym: "female human body" NARROW SENSU [FMA:67812]
xref: AAO:0010030
xref: BILA:0000028
xref: CARO:0000028
xref: FBbt:00007011
xref: FMA:67812
xref: HAO:0000028
xref: SCTID:362608006
xref: TAO:0000303
xref: TGMA:0001839
xref: XAO:0003005
xref: ZFA:0000303
is_a: UBERON:0000468 ! multi-cellular organism
disjoint_from: UBERON:0003101 ! male organism
[Term]
id: UBERON:0003101
name: male organism
def: "Gonochoristic organism that can produce male gametes." [CARO:0000027]
subset: vertebrate_core
synonym: "male" RELATED [TAO:0000242]
synonym: "male human body" NARROW SENSU [FMA:67811]
xref: AAO:0010033
xref: BILA:0000027
xref: CARO:0000027
xref: FBbt:00007004
xref: FMA:67811
xref: HAO:0000027
xref: SCTID:362609003
xref: TAO:0000242
xref: TGMA:0001838
xref: WBbt:0007850
xref: XAO:0003006
xref: ZFA:0000242
is_a: UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0003102
name: surface structure
def: "Organism subdivision that is the collection of anatomical structures on the body surface[ZFA]." [https://github.com/cmungall/uberon/issues/24, VSAO:0000001, Wikipedia:Surface_structure, ZFA:0000292]
subset: uberon_slim
subset: vertebrate_core
synonym: "anatomical surface feature" EXACT [EHDAA2:0003010]
xref: AAO:0010337
xref: AEO:0000010
xref: EHDAA2:0003010
xref: galen:SurfaceRegion
xref: TAO:0000292
xref: VSAO:0000001
xref: XAO:0003028
xref: ZFA:0000292
property_value: UBPROP:0000001 "Organism subdivision that is the collection of anatomical structures on the body surface.[AAO]" xsd:string
property_value: UBPROP:0000001 "Organism subdivision which is the collection of anatomical structures on the body surface.[TAO]" xsd:string
property_value: UBPROP:0000001 "Organism subdivision which is the collection of anatomical structures on the body surface.[VSAO]" xsd:string
is_a: UBERON:0000061 ! anatomical structure
relationship: overlaps UBERON:0007376 ! outer epithelial layer
[Term]
id: UBERON:0003103
name: compound organ
def: "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024]
subset: organ_slim
subset: upper_level
synonym: "organ" RELATED []
xref: AAO:0010015
xref: AEO:0000024
xref: BILA:0000024
xref: CARO:0000024
xref: EHDAA2:0003024
xref: HAO:0000024
xref: NIF_GrossAnatomy:birnlex_4
xref: TADS:0000598
xref: TAO:0000496
xref: TGMA:0001837
xref: VHOG:0001723
xref: XAO:0003041
xref: ZFA:0000496
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0003104
name: mesenchyme
def: "Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage[XAO]. A mesh-like cell arrangement, less compact than an epithelium[ZFA]. The part of the embryonic mesoderm, consisting of loosely packed, unspecialized cells set in a gelatinous ground substance, from which connective tissue, bone, cartilage, and the circulatory and lymphatic systems develop[BTO]." [BTO:0001393, Wikipedia:Mesenchyme, ZFIN:curator]
comment: Editors notes: the relationship to mesoderm is weaker than develops_from in order to have classes such as 'head mesenchyme from mesoderm' make sense
subset: uberon_slim
subset: vertebrate_core
synonym: "mesenchyma" RELATED LATIN [Wikipedia:Mesenchyme]
synonym: "mesenchymal tissue" EXACT []
synonym: "mesenchyme tissue" EXACT []
synonym: "portion of mesenchymal tissue" EXACT []
synonym: "portion of mesenchyme tissue" EXACT []
xref: AAO:0010427
xref: AEO:0000145
xref: BTO:0001393
xref: EHDAA2:0003145
xref: EV:0100007
xref: http://upload.wikimedia.org/wikipedia/commons/f/f4/Mesenchymal_Stem_Cell.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Mesenchymal_Stem_Cell.jpg/200px-Mesenchymal_Stem_Cell.jpg
xref: ncithesaurus:Mesenchyme
xref: TAO:0000393
xref: VHOG:0000170
xref: XAO:0003046
xref: ZFA:0000393
property_value: UBPROP:0000001 "A mesh-like cell arrangement, less compact than an epithelium. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000001 "Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage.[AAO]" xsd:string
is_a: UBERON:0000479 ! tissue
relationship: has_developmental_contribution_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0009142 ! entire mesenchyme
[Term]
id: UBERON:0003105
name: dorsal lateral plate region
def: "Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo. // Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf." [PMID:9618755, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "AGM" RELATED []
synonym: "AGM region" RELATED []
synonym: "aorta gonad mesonephros region" RELATED []
synonym: "aorta-gonads-mesonephros region" RELATED []
synonym: "DA roof" RELATED [ZFA:0005028]
synonym: "DA-PCV joint " EXACT [ZFA:0005028]
synonym: "DLP" EXACT []
synonym: "dorsal aorta - posterior cardinal vein joint" EXACT [ZFA:0005028]
synonym: "DP joint" EXACT [ZFA:0005028]
synonym: "ventral wall of dorsal aorta" EXACT []
xref: AAO:0011008
xref: EFO:0003699
xref: TAO:0005028
xref: XAO:0003051
xref: ZFA:0005028
property_value: UBPROP:0000001 "Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo.[AAO]" xsd:string
property_value: UBPROP:0000001 "Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf.[TAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0003081 ! lateral plate mesoderm
[Term]
id: UBERON:0003106
name: urostyle
def: "In teleosts: Anatomical cluster that is the result of fusion of preural centrum 1 with one or more adjacent ural centra[AAO]; Rodlike caudal bony structure unique to anurans that lies within a compartment formed by the elongated, anteriorly oriented pelvic girdle. The urostyle is formed by the fusion of the coccyx and the hypochord[AAO]." [AAO:0000732, TAO:0000158]
comment: In zebrafish, it is composed of preural vertebra 1 and ural centra 1 and 2. The number of ural centra that become fused with preural centrum 1 varies among teleost subgroups. Because of varying developmental origins the urostyle may not be homologous across species.[TAO]. Grouping with AAO dubious
subset: uberon_slim
synonym: "compound centrum" RELATED []
synonym: "last vertebra" RELATED []
synonym: "ultimate vertebra" RELATED []
xref: AAO:0000732
xref: TAO:0000158
xref: XAO:0003080
xref: ZFA:0000158
property_value: UBPROP:0000001 "Anatomical cluster that is the result of fusion of preural centrum 1 with one or more adjacent ural centra.[TAO]" xsd:string
property_value: UBPROP:0000001 "Rodlike caudal bony structure unique to anurans that lies within a compartment formed by the elongated, anteriorly oriented pelvic girdle. The urostyle is formed by the fusion of the coccyx and the hypochord.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of caudal fin skeleton (VSAO:0000167)[TAO]" xsd:string
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
[Term]
id: UBERON:0003107
name: Meckel's cartilage
def: "Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jar, or ventral mandibular arch. It is typically resorbed in adults." [PMID:3693112, Wikipedia:Meckel's_cartilage]
comment: Taxon notes: functional lower jaw of Elasmobranchii and Holocephali, the embryonic lower jaw of other gnathostomous vertebrates[http://www.briancoad.com]
subset: uberon_slim
subset: vertebrate_core
synonym: "cartilago arcus pharyngei primi" EXACT LATIN []
synonym: "Meckels cartilage" EXACT []
synonym: "primary mandinle" EXACT [http://www.briancoad.com]
synonym: "ventral mandibular cartilage" EXACT [ZFA:0001205]
xref: AAO:0000289
xref: EHDAA2:0001072
xref: EHDAA:7997
xref: EMAPA:17635
xref: EMAPA:17907
xref: MA:0001580
xref: SCTID:308773009
xref: TAO:0001205
xref: VHOG:0000249
xref: XAO:0003085
xref: ZFA:0001205
property_value: UBPROP:0000001 "Paired, rod-shaped elements that extend the length of the mandible and lie between the dentaries and the angulosplenials. Can be reduced to various extent in adults.[AAO]" xsd:string
property_value: UBPROP:0000001 "Pharyngeal arch cartilage that is the cartilaginous embryonic component of the lower jaw, or ventral mandibular arch. It develops into the endochondral articular and retroarticular bones. Meckel's cartilage is paired.[TAO]" xsd:string
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0011004 {source="ZFA"} ! pharyngeal arch cartilage
relationship: develops_from UBERON:0006263 ! Meckel's cartilage pre-cartilage condensation
relationship: part_of UBERON:0003278 {source="EHDAA2"} ! skeleton of lower jaw
relationship: part_of UBERON:0008895 {source="VHOG"} ! splanchnocranium
[Term]
id: UBERON:0003108
name: suspensorium
def: "Apparatus located toward the posterolateral end of the skull, at the level of the anterior margin of the otic capsule that suspends and braces the jaw against the skull." [AAO:0000596]
comment: Editor notes: requires review. Note AAO also includes 'palatoquadrate and suspensorium' as a class
synonym: "hyopalatine" EXACT [TAO:0000444]
synonym: "mandibular suspensorium" RELATED []
synonym: "suspensoria" EXACT [TAO:0000444]
xref: AAO:0000596
xref: TAO:0000444
xref: XAO:0003086
xref: ZFA:0000444
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: part_of UBERON:0008895 {source="ZFA"} ! splanchnocranium
[Term]
id: UBERON:0003109
name: parapophysis
def: "Endochondral bone that forms from a lateral outgrowth of the basiventral arcualia and connects the rib with the vertebral centrum[TAO]. A lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. ZFA: They can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [ZFIN:curator]
comment: TODO - check
subset: uberon_slim
synonym: "lateral process of basiventral" RELATED []
xref: AAO:0000708
xref: TAO:0001362
xref: ZFA:0001362
property_value: UBPROP:0000001 "Endochondral bone that forms from a lateral outgrowth of the basiventral arcualia and connects the rib with the vertebral centrum.[TAO]" xsd:string
property_value: UBPROP:0000001 "Paired processes, which arise near the dorsolateral part of the vertebral centrum, for the attachment of the capitulum of two-headed ribs.[AAO]" xsd:string
property_value: UBPROP:0000001 "Projections on each side of the vertebra from the point where the neural arch lamina joins the pedicel for the articulation with the head of a single-headed rib or the upper head of a double-headed rib. Also called diapophyses. They provide surfaces for the attachment of muscles. In anurans, the term transverse process is used in reference to the processes associated with the presacral and postsacral vertebrae.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from basiventral (TAO:0001361)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of non-Weberian precaudal vertebra (TAO:0001582)[TAO]" xsd:string
is_a: UBERON:0001077 ! transverse process of vertebra
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0002513 ! endochondral bone
[Term]
id: UBERON:0003110
name: otic region
comment: AO notes UBERONREF:0000007 has this as a syn for otic capsule
synonym: "cranial vault" RELATED [ZFA:0000189]
xref: AAO:0010208
xref: TAO:0000189
xref: XAO:0003175
xref: ZFA:0000189
property_value: UBPROP:0000001 "Anatomical cluster that is a posterolateral part of the cranium and structurally supports the vestibuloauditory system.[TAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical cluster that is a posterolateral part of the neurocranium and structurally supports the vestibuloauditory system.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps hyomandibular-otic region joint (TAO:0001947)[TAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0003111
name: sphenoid region
def: "Anatomical cluster that forms the floor and sidewalls of the middle part of the cranium." [TAO:0000290, UBERONREF:0000007]
xref: AAO:0010207
xref: TAO:0000290
xref: XAO:0003174
xref: ZFA:0000290
property_value: UBPROP:0000001 "Anatomical cluster that forms the floor and sidewalls of the middle part of the neurocranium.[AAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0003112
name: olfactory region
def: "Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the olfactory organ." [TAO:0000351]
synonym: "ethmoid region" RELATED [ZFA:0000351]
xref: AAO:0010206
xref: EFO:0003525
xref: ncithesaurus:Olfactory_Region
xref: TAO:0000351
xref: XAO:0003172
xref: ZFA:0000351
property_value: UBPROP:0000001 "Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the peripheral olfactory organ.[TAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical cluster that is located in the anterior region of the neurocranium and provides structural support for the olfactory organs.[AAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0003113
name: dermatocranium
def: "Subdivision of skeleton that includes all dermal bones in the cranial skeleton[ZFA,modified]." [Wikipedia:Skull_roof, ZFA:0000863]
comment: Editor notes: wikipedia treats skull roof and dermatocranium as synonymous, but some sources treat the roof as being part of the dermatocranium - see UBERONREF:0000007
synonym: "dermal bone cranium" RELATED [ZFA:0000863]
synonym: "dermal part of skull" RELATED []
synonym: "exocranium" EXACT [UBERONREF:0000007]
synonym: "roof of skull" RELATED [Wikipedia:Skull_roof]
synonym: "roofing bones of the skull" RELATED [Wikipedia:Skull_roof]
synonym: "skull roof" RELATED [Wikipedia:Skull_roof]
xref: AAO:0010154
xref: TAO:0000863
xref: VHOG:0001665
xref: XAO:0003169
xref: ZFA:0000863
property_value: RO:0002161 NCBITaxon:7777
property_value: UBPROP:0000001 "Anatomical cluster that is part of the cranium and composed of dermally derived bones.[TAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical cluster that is part of the cranium which consists of dermally derived bones.[AAO]" xsd:string
is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system
relationship: part_of UBERON:0010323 {source="ZFA"} ! cranial skeletal system
[Term]
id: UBERON:0003114
name: pharyngeal arch 3
def: "The third branchial arch contributes to the development of the hyoid bone, stylopharyngeus muscle, inferior parathyroid gland, and thymus." [MP:0006339]
comment: in XAO, called branchial arch 1 and df VP3
subset: vertebrate_core
synonym: "3rd arch" RELATED [EHDAA2:0000069]
synonym: "3rd pharyngeal arch" EXACT []
synonym: "branchial arch 1" RELATED SENSU [AAO:0010365, ZFA:0001606]
synonym: "first branchial arch" RELATED SENSU [ZFA:0001606]
synonym: "first gill arch" EXACT SENSU [ZFA:0001606]
synonym: "gill arch 1" EXACT SENSU [ZFA:0001606]
synonym: "third pharyngeal arch" EXACT []
synonym: "third visceral arch" EXACT []
synonym: "visceral arch 3" EXACT []
xref: AAO:0010365
xref: EHDAA2:0000069
xref: EHDAA:1080
xref: EMAPA:16399
xref: SCTID:308769006
xref: TAO:0001598
xref: VHOG:0000298
xref: XAO:0000447
xref: ZFA:0001606
property_value: "pharyngeal_arch_number" "3" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "The most anterior, or first, pharygeal/branchial arch, composed of the mandibular process, forming the posterior border of the stomodeum, and the maxillary process anterior to the stomodeum, contains the first aortic arch.[AAO]" xsd:string
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003115
name: pharyngeal arch 4
def: "contributes to development of the cartilage of the larynx, laryngeal, pharyngeal, and soft palate muscles, superior parathyroid gland, and C-cells of the thymus" [MP:0006340]
comment: in XAO, called branchial arch 2 and df VP4
subset: uberon_slim
subset: vertebrate_core
synonym: "4th arch" RELATED [EHDAA2:0000086]
synonym: "4th branchial arch" EXACT SENSU []
synonym: "4th pharyngeal arch" EXACT []
synonym: "4th visceral arch" EXACT []
synonym: "branchial arch 2" RELATED SENSU [AAO:0010366, ZFA:0001607]
synonym: "fourth pharyngeal arch" EXACT []
synonym: "gill arch 2" EXACT SENSU [ZFA:0001607]
synonym: "second branchial arch" RELATED SENSU [ZFA:0001607]
synonym: "second gill arch" EXACT SENSU [ZFA:0001607]
synonym: "visceral arch 4" EXACT []
xref: AAO:0010366
xref: EHDAA2:0000086
xref: EHDAA:1663
xref: EMAPA:16760
xref: SCTID:308770007
xref: TAO:0001599
xref: VHOG:0000299
xref: XAO:0000449
xref: ZFA:0001607
property_value: "pharyngeal_arch_number" "4" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "The second pharyngeal/branchial arch; arises as a thickening of the pharygeal wall between the first and second branchial clefts; contains the second aortic arch; forms part of the hyoid bone, tongue and facial musculature.[AAO]" xsd:string
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003116
name: pharyngeal arch 5
comment: A fifth arch never establishes itself in amniotes // in XAO, called branchial arch 3 and df VP5
synonym: "branchial arch 3" RELATED SENSU [AAO:0010367, XAO:0000451]
synonym: "branchial arch 3" RELATED [ZFA:0001608]
synonym: "fifth visceral arch" EXACT [XAO:0000451]
synonym: "gill arch 3" EXACT [ZFA:0001608]
synonym: "third branchial arch" RELATED SENSU [XAO:0000451]
synonym: "visceral arch 5" EXACT [ZFA:0001608]
xref: AAO:0010367
xref: SCTID:308771006
xref: TAO:0001600
xref: VHOG:0001204
xref: XAO:0000451
xref: ZFA:0001608
property_value: "pharyngeal_arch_number" "5" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "The third in a series of paired bars in the wall of the pharynx, within which are formed the third aortic arch and the cartilage bar of the visceral skeleton, forms and supports the gills.[AAO]" xsd:string
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003117
name: pharyngeal arch 6
alt_id: UBERON:0004349
def: "The 6th pharyngeal arch. contributes to the development of the sternocleidomastoid and trapezius muscles" [MP:0006347]
synonym: "6th arch" EXACT [EHDAA2:0004075]
synonym: "branchial arch 4" RELATED SENSU [AAO:0010368, ZFA:0001609]
synonym: "fourth branchial arch" RELATED SENSU []
synonym: "gill arch 4" EXACT [ZFA:0001609]
synonym: "sixth branchial arch" EXACT []
synonym: "sixth visceral arch" RELATED [XAO:0000453]
synonym: "visceral arch 6" EXACT [ZFA:0001609]
xref: AAO:0010368
xref: EHDAA2:0004075
xref: SCTID:308772004
xref: TAO:0001601
xref: VHOG:0001205
xref: XAO:0000453
xref: ZFA:0001609
property_value: "pharyngeal_arch_number" "6" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "The forth in a series of paired bars in the wall of the pharynx, within which are formed the forth aortic arch and the cartilage bar of the visceral skeleton, forms and supports the gills.[AAO]" xsd:string
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003118
name: aortic arch 1
alt_id: UBERON:0004371
def: "the vessels formed within the first pair of branchial arches in embryogenesis" [MP:0006356]
comment: ZFA: The paired aortic arch 1 arteries branch off of the ventral aorta, and empty into the right and left lateral dorsal aortas. // Disappears early in development in tetrapods
subset: vertebrate_core
synonym: "1st arch artery" EXACT [EMAPA:16685]
synonym: "AA1" EXACT [ZFA:0005005]
synonym: "first aortic arch" EXACT [XAO:0000342]
synonym: "first branchial arch artery" EXACT []
synonym: "mandibular aortic arch" EXACT [ZFA:0005005]
xref: AAO:0010415
xref: EHDAA2:0000007
xref: EMAPA:16202
xref: EMAPA:16685
xref: SCTID:308774003
xref: TAO:0005005
xref: VHOG:0000149
xref: XAO:0000342
xref: ZFA:0005005
is_a: UBERON:0004363 ! aortic arch
relationship: part_of UBERON:0004362
intersection_of: UBERON:0004363 ! aortic arch
intersection_of: part_of UBERON:0004362 ! pharyngeal arch 1
relationship: part_of UBERON:0004362 ! pharyngeal arch 1
[Term]
id: UBERON:0003119
name: aortic arch 2
alt_id: UBERON:0004372
def: "The first and second arches disappear early, but the dorsal end of the second gives origin to the stapedial artery, a vessel which atrophies in humans but persists in some mammals. It passes through the ring of the stapes and divides into supraorbital, infraorbital, and mandibular branches which follow the three divisions of the trigeminal nerve. The infraorbital and mandibular arise from a common stem, the terminal part of which anastomoses with the external carotid. On the obliteration of the stapedial artery this anastomosis enlarges and forms the internal maxillary artery, and the branches of the stapedial artery are now branches of this vessel. The common stem of the infraorbital and mandibular branches passes between the two roots of the auriculotemporal nerve and becomes the middle meningeal artery; the original supraorbital branch of the stapedial is represented by the orbital twigs of the middle meningeal[WP]." [Wikipedia:Aortic_arches#Arches_1_and_2]
subset: vertebrate_core
synonym: "2nd arch artery" EXACT [EHDAA2:0000051]
synonym: "AA2" EXACT [ZFA:0005006]
synonym: "hyoid aortic arch" EXACT [ZFA:0005006]
synonym: "second aortic arch" EXACT [XAO:0000343]
synonym: "second branchial arch artery" EXACT []
xref: AAO:0010418
xref: EHDAA2:0000051
xref: EMAPA:16203
xref: EMAPA:16686
xref: SCTID:308775002
xref: TAO:0005006
xref: VHOG:0000148
xref: XAO:0000343
xref: ZFA:0005006
property_value: UBPROP:0000001 "The second in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 2 that is part of hyoid arch.[AAO]" xsd:string
is_a: UBERON:0004363 ! aortic arch
relationship: part_of UBERON:0003066
intersection_of: UBERON:0004363 ! aortic arch
intersection_of: part_of UBERON:0003066 ! pharyngeal arch 2
relationship: part_of UBERON:0003066 ! pharyngeal arch 2
[Term]
id: UBERON:0003120
name: aortic arch 3
alt_id: UBERON:0004352
def: "The third aortic arch constitutes the commencement of the internal carotid artery, and is therefore named the carotid arch[WP]." [Wikipedia:Aortic_arches#Arch_3]
subset: vertebrate_core
synonym: "3rd arch artery" EXACT [EHDAA2:0000070]
synonym: "AA3" EXACT [ZFA:0005007]
synonym: "carotid arch" EXACT [Wikipedia:Aortic_arches#Arch_3]
synonym: "third aortic arch" EXACT [XAO:0000344]
synonym: "third branchial arch artery" EXACT []
xref: AAO:0010419
xref: EHDAA2:0000070
xref: EMAPA:16687
xref: SCTID:308776001
xref: TAO:0005007
xref: VHOG:0000147
xref: XAO:0000344
xref: ZFA:0005007
property_value: UBPROP:0000001 "Aortic arches 3 and 4 are not remodeled but are retained largely intact as the branchial arteries providing circulation through the gills. These areches are direct branches from the ventral aorta to the lateral dorsal aorta. Isogai et al. 2001.[TAO]" xsd:string
property_value: UBPROP:0000001 "The third in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 3 lies within the 3rd branchial arch and branches directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult.[AAO]" xsd:string
is_a: UBERON:0004363 ! aortic arch
relationship: part_of UBERON:0003114
intersection_of: UBERON:0004363 ! aortic arch
intersection_of: part_of UBERON:0003114 ! pharyngeal arch 3
relationship: part_of UBERON:0003114 ! pharyngeal arch 3
[Term]
id: UBERON:0003121
name: aortic arch 4
alt_id: UBERON:0004350
def: "The fourth right arch forms the right subclavian as far as the origin of its internal mammary branch; while the fourth left arch constitutes the arch of the aorta between the origin of the left carotid artery and the termination of the ductus arteriosus[WP]." [Wikipedia:Aortic_arches#Arch_4]
comment: Development notes: Normally, the left fourth arch becomes the aortic arch, the right fourth arch contributes to the innominate artery[http://emedicine.medscape.com/article/899609-overview] in birds it is the right fourth arch which forms the permanent aorta // proximal right subclavian
subset: vertebrate_core
synonym: "4th arch artery" EXACT [EHDAA2:0000087]
synonym: "AA4" EXACT [ZFA:0005008]
synonym: "fourth aortic arch" EXACT [XAO:0000355]
synonym: "fourth branchial arch artery" EXACT []
synonym: "systemic arch" RELATED [ISBN10:0073040584, XAO:0000355]
xref: AAO:0010420
xref: EHDAA2:0000087
xref: EMAPA:17004
xref: SCTID:308777005
xref: TAO:0005008
xref: VHOG:0000146
xref: XAO:0000355
xref: ZFA:0005008
property_value: UBPROP:0000001 "Aortic arches 3 and 4 are not remodeled but are retained largely intact as the branchial arteries providing circulation through the gills. These areches are direct branches from the ventral aorta to the lateral dorsal aorta. Isogai et al. 2001.[TAO]" xsd:string
property_value: UBPROP:0000001 "The forth in a series paired arterial connections between the dorsal and ventral aortae, lies within the 4th branchial arch. The paired aortic arch 4 arteries branch directly from the ventral aorta to the lateral dorsal aorta, and are retained as the branchial arteries providing circulation through the gills in the adult.[AAO]" xsd:string
is_a: UBERON:0004363 ! aortic arch
relationship: part_of UBERON:0003115
intersection_of: UBERON:0004363 ! aortic arch
intersection_of: part_of UBERON:0003115 ! pharyngeal arch 4
relationship: part_of UBERON:0003115 ! pharyngeal arch 4
[Term]
id: UBERON:0003122
name: aortic arch 5
def: "The fifth arch disappears on both sides[WP]." [Wikipedia:Aortic_arches#Arch_5]
subset: vertebrate_core
synonym: "AA5" EXACT [ZFA:0005009]
synonym: "fifth aortic arch" EXACT [XAO:0000352]
xref: AAO:0010421
xref: SCTID:308778000
xref: TAO:0005009
xref: VHOG:0000145
xref: XAO:0000352
xref: ZFA:0005009
property_value: UBPROP:0000001 "The fifth and sixth arches, which come on-line at approximately 2.5 dpf, have a common trunk from the ventral aorta and drain to the midline dorsal aorta via an independent route. The fifth and sixth aortic arches supply the trunk and tail with oxigenated blood. Isogai et al. 2001.[TAO]" xsd:string
property_value: UBPROP:0000001 "The fifth in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 5 artery is paired and has a common trunk with aortic arch 6 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. Aortic arches 5 and 6 supply the trunk and tail with oxygenated blood.[AAO]" xsd:string
is_a: UBERON:0004363 ! aortic arch
relationship: part_of UBERON:0003116
intersection_of: UBERON:0004363 ! aortic arch
intersection_of: part_of UBERON:0003116 ! pharyngeal arch 5
relationship: part_of UBERON:0003116 ! pharyngeal arch 5
[Term]
id: UBERON:0003123
name: aortic arch 6
alt_id: UBERON:0004351
def: "The sixth right arch disappears; the sixth left arch gives off the pulmonary arteries and forms the ductus arteriosus; this duct remains pervious during the whole of fetal life, but then closes within the first few days after birth due to increased O2 concentration. Oxygen concentration causes the production of bradykinin which causes the ductus to constrict occluding all flow. Within 1-3 months, the ductus is obliterated and becomes the ligamentum arteriosus. His showed that in the early embryo the right and left arches each gives a branch to the lungs, but that later both pulmonary arteries take origin from the left arch[WP]." [Wikipedia:Aortic_arches#Arch_6]
comment: Development notes: the distal left sixth arch becomes the ductus arteriosus, the proximal sixth arches bilaterally contribute to the proximal branch pulmonary arteries[http://emedicine.medscape.com/article/899609-overview]
subset: vertebrate_core
synonym: "6th arch artery" EXACT [EMAPA:17005]
synonym: "AA6" EXACT [ZFA:0005016]
synonym: "pulmonary arch" RELATED [ISBN10:0073040584]
synonym: "sixth aortic arch" EXACT [XAO:0000353]
synonym: "sixth branchial arch artery" EXACT []
xref: AAO:0010422
xref: EHDAA2:0000102
xref: EMAPA:17005
xref: SCTID:308779008
xref: TAO:0005016
xref: VHOG:0000144
xref: XAO:0000353
xref: ZFA:0005016
property_value: UBPROP:0000001 "The fifth and sixth arches, which come on-line at approximately 2.5 dpf, have a common trunk from the ventral aorta and drain to the midline dorsal aorta via an independent route. The fifth and sixth aortic arches supply the trunk and tail with oxigenated blood. Isogai et al. 2001.[TAO]" xsd:string
property_value: UBPROP:0000001 "The sixth in a series paired arterial connections between the dorsal and ventral aortae. Aortic arch 6 artery is paired and has a common trunk with aortic arch 5 from the ventral aorta, and drains via a separate branch of the lateral dorsal aorta. It forms part of the pulmonary arteries, and in the later embryo, the ductus arteriosis. Aortic arches 5 and 6 together supply the trunk and tail with oxygenated blood.[AAO]" xsd:string
is_a: UBERON:0004363 ! aortic arch
relationship: part_of UBERON:0003117
intersection_of: UBERON:0004363 ! aortic arch
intersection_of: part_of UBERON:0003117 ! pharyngeal arch 6
relationship: part_of UBERON:0003117 ! pharyngeal arch 6
[Term]
id: UBERON:0003124
name: chorion
def: "The outer membrane of the two membranes enclosing the embryo in reptiles, birds, and mammals. In placental mammals it contributes to the development of the placenta[BTO]. Wikipedia: The chorion is one of the membranes that exists during pregnancy between the developing fetus and mother. It is formed by extraembryonic mesoderm and the two layers of trophoblast and surrounds the embryo and other membranes. The chorionic villi emerge from the chorion, invade the endometrium, and allow transfer of nutrients from maternal blood to fetal blood." [Wikipedia:Chorion]
comment: Development notes: Extra-embryonic ectoderm[PMID:19829370]. Taxon notes: The chorion of placentals is bilaminar as in reptiles and birds, but forms from the trophoblast and includes the ajdacent mesodermal layer [ISBN10:0073040584 "Vertebrates, Kardong"].
subset: uberon_slim
synonym: "chorion (vertebrates)" EXACT []
synonym: "chorion frondosum" RELATED [Wikipedia:Chorion]
synonym: "chorionic sac" RELATED [Wikipedia:Chorion]
xref: BTO:0000252
xref: EFO:0002780
xref: EHDAA2:0000245
xref: EHDAA:150
xref: EMAPA:16112
xref: EV:0100121
xref: FMA:80224
xref: GAID:1299
xref: http://upload.wikimedia.org/wikipedia/commons/5/51/Gray24.png
xref: MESH:A.16.254.403.473
xref: ncithesaurus:Chorion
xref: ncithesaurus:Chorionic_Sac
xref: VHOG:0000200
is_a: UBERON:0005631 ! extraembryonic membrane
relationship: adjacent_to UBERON:0000922 ! embryo
relationship: has_part UBERON:0003265 ! chorionic mesoderm
relationship: has_part UBERON:0003374 ! chorionic ectoderm
[Term]
id: UBERON:0003125
name: vitelline membrane
def: "a structure directly adjacent to the outer surface of the plasma membrane of an ovum. It is composed mostly of protein fibers, with protein receptors needed for sperm binding, binding to sperm plasma membrane receptors. The species-specificity between these receptors contributes to prevention of breeding between different species [Wikipedia]. A protective layer around the egg[FBbt]." [Wikipedia:Vitelline_membrane]
comment: TODO - consider GO CC request. GO:0030704-vitelline membrane formation considered a subclass of CC organization
subset: dubious_grouping
synonym: "m. vitellina" RELATED LATIN [Wikipedia:Vitelline_membrane]
synonym: "yolk sac membrane" RELATED [BTO:0001450]
synonym: "zona pellucida" RELATED []
xref: AAO:0010332
xref: BTO:0001450
xref: EHDAA2:0002220
xref: FBbt:00000042
xref: GAID:1318
xref: MESH:A.16.631.886
xref: VHOG:0000720
xref: XAO:0000030
property_value: UBPROP:0000001 "Thin membrane enclosing and immediately adjacent to the ovum. Produced in the ovary.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of zygote (AAO:0010324)[AAO]" xsd:string
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003126
name: trachea
def: "A trachea held open by up to 20 C-shaped rings of cartilage [Wikipedia]. The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph]." [GO:0060438, Wikipedia:Vertebrate_trachea]
comment: In birds, the trachea runs from the pharynx to the syrinx, from which the primary bronchi diverge. Swans have an unusually elongated trachea, part of which is coiled beneath the sternum; this may act as a resonator to amplify sound. In some birds, the cartilagenous rings are complete, and may even be ossified. In amphibians, the trachea is normally extremely short, and leads directly into the lungs, without clear primary bronchi. A longer trachea is, however found in some long-necked salamanders, and in caecilians. While there are irregular cartilagenous nodules on the amphibian trachea, these do not form the rings found in amniotes. The only vertebrate to have lungs, but no trachea, is Polypterus, in which the lungs arise directly from the pharynx.
subset: major_organ
subset: uberon_slim
synonym: "cartilaginous trachea" EXACT []
synonym: "tracheal tubule" RELATED [BTO:0001388]
synonym: "vertebrate trachea" EXACT SENSU []
synonym: "windpipe" EXACT []
xref: AAO:0010140
xref: BTO:0001388
xref: EFO:0000935
xref: EHDAA2:0002066
xref: EHDAA:3078
xref: EMAPA:16853
xref: EV:0100040
xref: FMA:7394
xref: GAID:361
xref: http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg
xref: MA:0000441
xref: MAT:0000137
xref: MESH:A.04.889
xref: MIAA:0000137
xref: ncithesaurus:Trachea
xref: OpenCyc:Mx4rvViOX5wpEbGdrcN5Y29ycA
xref: SCTID:181213009
xref: VHOG:0000371
xref: XAO:0000118
property_value: UBPROP:0000001 "An elongated tube which carries air to and from the lungs.[AAO]" xsd:string
is_a: UBERON:0001005 ! respiratory airway
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium
relationship: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0007196 ! tracheobronchial tree
[Term]
id: UBERON:0003127
name: open tracheal system trachea
def: "A trachea composed of composed of spiracles, tracheae, and tracheoles [Wikipedia]. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster." [GO:0007424, Wikipedia:Invertebrate_trachea]
comment: TODO check if is_a epithelium
subset: uberon_slim
synonym: "invertebrate trachea" EXACT []
synonym: "trachea" BROAD SENSU [FBbt:00005043]
xref: FBbt:00005043
xref: SPD:0000434
xref: TADS:0000315
is_a: UBERON:0001005 ! respiratory airway
relationship: has_part UBERON:0003914 ! epithelial tube
[Term]
id: UBERON:0003128
name: cranium
def: "Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)]
comment: The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP]. AO notes: the inclusion of the FMA class here is probably not quite correct, as this class includes as parts sutures, whereas this is not part of the bones of the cranium
subset: uberon_slim
subset: vertebrate_core
synonym: "bones of cranium" EXACT [FMA:71325]
synonym: "calvarium" RELATED [BTO:0001328]
synonym: "epicranial plate" RELATED []
synonym: "ossa cranii" EXACT [FMA:71325, FMA:TA]
synonym: "skeletal system of head" RELATED []
synonym: "skull minus mandible" EXACT []
synonym: "upper part of skull" EXACT []
xref: BTO:0001328
xref: EFO:0000831
xref: EHDAA:6029
xref: FMA:71325
xref: MA:0000316
xref: MAT:0000340
xref: MIAA:0000340
xref: OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA
xref: SCTID:181889008
xref: VHOG:0000334
property_value: "spatially_disjoint_from" UBERON:0003278
is_a: UBERON:0000075 {source="FMA-inferred"} ! subdivision of skeletal system
relationship: part_of UBERON:0003129 ! skull
[Term]
id: UBERON:0003129
name: skull
def: "Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376, PMID:11523816, Wikipedia:Skull]
comment: In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton
subset: uberon_slim
synonym: "cranial skeleton" RELATED []
synonym: "skeletal system of head" RELATED []
xref: BTO:0001295
xref: EHDAA2:0000325
xref: EMAPA:17680
xref: FMA:46565
xref: GAID:82
xref: galen:Skull
xref: MESH:A.02.835.232.781
xref: ncithesaurus:Skull
xref: OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA
xref: SCTID:110530005
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_part UBERON:0003128 ! cranium
relationship: has_part UBERON:0003278 ! skeleton of lower jaw
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0010323 ! cranial skeletal system
[Term]
id: UBERON:0003130
name: arthropod sternum
def: "ventral portion of a segment of an arthropod thorax or abdomen. In insects, the sterna are usually single, large sclerites, and external. However, they can sometimes be divided in two or more, in which case the subunits are called sternites, and may also be modified on the terminal abdominal segments so as to form part of the functional genitalia, in which case they are frequently reduced in size and development, and may become internalized and/or membranous." [Wikipedia:Sternum_(arthropod)]
subset: uberon_slim
synonym: "sternum" BROAD []
xref: FBbt:00004557
xref: HAO:0000956
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003131
name: arthropod tibia
def: "A section of the arthropod leg." [Wikipedia:Arthropod_leg]
comment: Homologies of leg segments between groups are difficult to prove and are the source of much argument. Some authors posit up to eleven segments per leg for the most recent common ancestor of extant arthropods [1], but modern arthropods have eight or fewer. It has been argued [2][3] that the ancestral leg need not have been so complex, and that other events, such as the successive loss of function of a Hox-gene could result in parallel gains of leg segments.
subset: uberon_slim
xref: FBbt:00004642
xref: HAO:0001017
xref: TADS:0000281
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0005895 ! insect leg
[Term]
id: UBERON:0003132
name: arthropod hypopharynx
def: "A median tonguelike structure arising from the mouth." [http://www.britannica.com/EBchecked/topic/279974/hypopharynx]
subset: uberon_slim
xref: FBbt:00005751
xref: HAO:0000409
xref: TGMA:0000090
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0006562 ! pharynx
[Term]
id: UBERON:0003133
name: reproductive organ
def: "An organ involved in reproduction" [UBERON:xp]
comment: GO uses genitalia for the singular organ
subset: functional_classification
subset: organ_slim
synonym: "genital organ" EXACT []
synonym: "genitalia" RELATED PLURAL []
synonym: "reproductive system organ" EXACT []
synonym: "sex organ" EXACT []
xref: EMAPA:17381
xref: MA:0001752
xref: MESH:A.05.360
xref: ncithesaurus:Genitalia
xref: OpenCyc:Mx4rwO39aJwpEbGdrcN5Y29ycA
xref: SCTID:128181006
xref: TGMA:0000591
xref: WBbt:0008422
is_a: UBERON:0000062 ! organ
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000990 ! reproductive system
[Term]
id: UBERON:0003134
name: female reproductive organ
def: "A female organ involved in reproduction" [UBERON:xp]
subset: organ_slim
synonym: "female organism reproductive organ" EXACT [OBOL:automatic]
synonym: "female organism reproductive structure" EXACT [OBOL:automatic]
synonym: "female organism reproductive system organ" EXACT [OBOL:automatic]
synonym: "female organism sex organ" EXACT [OBOL:automatic]
synonym: "female reproductive system organ" EXACT []
synonym: "female sex organ" EXACT []
synonym: "reproductive organ of female organism" EXACT [OBOL:automatic]
synonym: "reproductive structure of female organism" EXACT [OBOL:automatic]
synonym: "reproductive system organ of female organism" EXACT [OBOL:automatic]
synonym: "sex organ of female organism" EXACT [OBOL:automatic]
xref: EMAPA:17959
xref: MA:0000544
is_a: UBERON:0003133 ! reproductive organ
relationship: part_of UBERON:0003100
intersection_of: UBERON:0003133 ! reproductive organ
intersection_of: part_of UBERON:0003100 ! female organism
relationship: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0003100 ! female organism
[Term]
id: UBERON:0003135
name: male reproductive organ
def: "A male organ involved in reproduction" [UBERON:xp]
subset: organ_slim
synonym: "male organism reproductive organ" EXACT [OBOL:automatic]
synonym: "male organism reproductive structure" EXACT [OBOL:automatic]
synonym: "male organism reproductive system organ" EXACT [OBOL:automatic]
synonym: "male organism sex organ" EXACT [OBOL:automatic]
synonym: "male reproductive system organ" EXACT []
synonym: "male sex organ" EXACT []
synonym: "reproductive organ of male organism" EXACT [OBOL:automatic]
synonym: "reproductive structure of male organism" EXACT [OBOL:automatic]
synonym: "reproductive system organ of male organism" EXACT [OBOL:automatic]
synonym: "sex organ of male organism" EXACT [OBOL:automatic]
xref: EMAPA:17968
xref: MA:0000545
is_a: UBERON:0003133 ! reproductive organ
relationship: part_of UBERON:0003101
intersection_of: UBERON:0003133 ! reproductive organ
intersection_of: part_of UBERON:0003101 ! male organism
relationship: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0003101 ! male organism
[Term]
id: UBERON:0003136
name: tagma
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003137
name: antennal segment
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003138
name: thoracic segment
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003139
name: larval tagma
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003140
name: larval thorax
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003141
name: larval abdomen
is_obsolete: true
[Term]
id: UBERON:0003142
name: prepupa
synonym: "PP" RELATED [FBbt:00002952]
xref: BTO:0001110
xref: FBbt:00002952
xref: HAO:0000812
is_a: UBERON:0000468 ! multi-cellular organism
relationship: develops_from UBERON:0002548 ! larva
[Term]
id: UBERON:0003143
name: pupa
def: "Organism at the pupal stage. The pupal stage is a life stage of some insects undergoing transformation. The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago." [Wikipedia:Pupa]
xref: BTO:0001143
xref: EFO:0002684
xref: FBbt:00002953
xref: HAO:0000886
xref: OpenCyc:Mx4rwQCBr5wpEbGdrcN5Y29ycA
is_a: UBERON:0000468 ! multi-cellular organism
relationship: existence_starts_and_ends_during UBERON:0000070
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_starts_and_ends_during UBERON:0000070 ! pupal stage
relationship: existence_starts_and_ends_during UBERON:0000070 ! pupal stage
[Term]
id: UBERON:0003144
name: adult tagma
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003145
name: adult arthropod thorax
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003146
name: adult arthropod abdomen
is_obsolete: true
[Term]
id: UBERON:0003147
name: peritreme
def: "That part of the integument of an insect which surrounds the spiracles." [http://www.answers.com/topic/peritreme]
comment: arthropod specific groupings belong in separate ontology. term also used for edge of the aperture of a univalve shell
synonym: "rim" RELATED [FBbt:00003121]
is_obsolete: true
[Term]
id: UBERON:0003148
name: sclerite
def: "hardened portions of arthropod exoskeletons." [Wikipedia:Sclerite]
comment: arthropod specific groupings belong in separate ontology
synonym: "plate" RELATED [FBbt:00004475]
is_obsolete: true
[Term]
id: UBERON:0003149
name: tergite
comment: arthropod specific groupings belong in separate ontology
synonym: "abdominal tergite" EXACT [FBbt:00004476]
is_obsolete: true
[Term]
id: UBERON:0003150
name: sternite
comment: arthropod specific groupings belong in separate ontology
synonym: "abdominal sternite" EXACT [FBbt:00004477]
is_obsolete: true
[Term]
id: UBERON:0003151
name: foramen
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003152
name: phragma
def: "The lamella that serves as the site of attachment of the longitudinal flight muscle [HAO]." [HAO:0000716]
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003153
name: head capsule
xref: BTO:0004711
xref: EFO:0001927
xref: FBbt:00004482
xref: HAO:0000398
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003154
name: gena
comment: arthropod specific groupings belong in separate ontology
synonym: "cheek" RELATED [FBbt:00004491]
is_obsolete: true
[Term]
id: UBERON:0003155
name: arthropod occiput
comment: arthropod specific groupings belong in separate ontology, but this is retained for disambiguation purposes
synonym: "occiput" RELATED SENSU [FBbt:00004492]
xref: FBbt:00004492
xref: HAO:0000658
xref: TGMA:0000041
is_a: UBERON:0006056 ! posterior surface of head
disjoint_from: UBERON:0006054 ! surface of occiput
[Term]
id: UBERON:0003156
name: postocciput
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003157
name: postgena
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003158
name: tentorial pit
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003159
name: anterior tentorial pit
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003160
name: posterior tentorial pit
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003161
name: dorsal ocellus
def: "A simple visual organ of insects[GO]. Two ocelli appear on the vertical and one on the frontal plate[FBbt]. The multi-tissue structure that is located on the top of the head, composed of the corneal lens, pigment cell, rhabdoms and synaptic plexus[HAO]. Two evolutionary distinct ocellus types exist [2]: dorsal ocelli (or simply 'ocelli'), found in most insects, and lateral ocelli (or stemmata), which are found in the larvae of some insect orders. They are structurally and functionally very different. Simple eyes of other animals, e.g. cnidarians may also be referred to as 'ocelli', but again the structure and anatomy of these eyes is quite distinct from those of the dorsal ocelli of insects[Wikipedia]." [FBbt:00004505, GO:0008056, HAO:0000661, Wikipedia:Ocellus#Ocelli]
synonym: "dorsal ocelli" RELATED PLURAL []
synonym: "ocelli" RELATED PLURAL []
synonym: "ocellus" EXACT []
xref: BTO:0001758
xref: FBbt:00004505
xref: HAO:0000661
is_a: UBERON:0000963 ! head sensillum
[Term]
id: UBERON:0003162
name: lateral ocellus
def: "The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000481, Wikipedia:Ocellus#Ocelli]
xref: FBbt:00004506
xref: HAO:0000481
is_a: UBERON:0003161 ! dorsal ocellus
[Term]
id: UBERON:0003163
name: mouthpart
comment: TODO
is_obsolete: true
[Term]
id: UBERON:0003164
name: clypeus
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003165
name: cibarium
comment: arthropod specific groupings belong in separate ontology
synonym: "atrium" RELATED [FBbt:00004526]
is_obsolete: true
[Term]
id: UBERON:0003166
name: prementum
comment: arthropod specific groupings belong in separate ontology
synonym: "theca" RELATED [FBbt:00004534]
is_obsolete: true
[Term]
id: UBERON:0003167
name: lacinia
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003168
name: mentum
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003169
name: cervical sclerite
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003170
name: tergum
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003171
name: episternum
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003172
name: epimeron
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003173
name: pronotum
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003174
name: furcasternum
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003175
name: prescutum
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003176
name: anterior notal wing process
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003177
name: posterior notal wing process
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003178
name: postnotum
comment: arthropod specific groupings belong in separate ontology
synonym: "postscutellum" RELATED [FBbt:00004588]
is_obsolete: true
[Term]
id: UBERON:0003179
name: pleural wing process
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003180
name: anepisternum
comment: arthropod specific groupings belong in separate ontology
synonym: "mesopleurite" RELATED [FBbt:00004597]
is_obsolete: true
[Term]
id: UBERON:0003181
name: scutoscutellar suture
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003182
name: pleural suture
is_obsolete: true
[Term]
id: UBERON:0003183
name: notopleural suture
is_obsolete: true
[Term]
id: UBERON:0003184
name: mesofurca
comment: arthropod specific groupings belong in separate ontology
synonym: "mesothoracic sternal apophysis" RELATED [FBbt:00004619]
is_obsolete: true
[Term]
id: UBERON:0003185
name: metafurca
comment: arthropod specific groupings belong in separate ontology
synonym: "metathoracic sternal apophysis" RELATED [FBbt:00004638]
is_obsolete: true
[Term]
id: UBERON:0003186
name: coxa
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003187
name: pretarsus
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003188
name: auxilia
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003189
name: unguitractor plate
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003190
name: empodium
is_obsolete: true
[Term]
id: UBERON:0003191
name: tegula
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003192
name: axillary sclerite
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003193
name: axillary cord
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003194
name: imaginal disc-derived wing vein
xref: FBbt:00004751
xref: HAO:0001095
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0000984 ! imaginal disc-derived wing
[Term]
id: UBERON:0003195
name: crossvein
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003196
name: wing cell
comment: arthropod specific groupings belong in separate ontology
synonym: "intervein" RELATED [FBbt:00004769]
is_obsolete: true
[Term]
id: UBERON:0003197
name: costal cell
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003198
name: aedeagus
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003199
name: egg chamber
synonym: "follicle" RELATED [FBbt:00004894]
synonym: "germarium derived egg chamber" EXACT [FBbt:00004894]
xref: FBbt:00004894
xref: HAO:0000287
xref: ncithesaurus:Follicle
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0003200
name: pedicel
is_obsolete: true
[Term]
id: UBERON:0003201
name: exocuticle
def: "The outer layer of the procuticle of certain crustaceans and arthropods, which contains cuticulin, chitin, and phenolic substances that are oxidized to produce the dark pigment of the cuticle;nThe hard and usually darkened layer of the cuticle lying between the endocuticle and epicuticle." [BTO:0001602]
xref: BTO:0001602
xref: FBbt:00004973
xref: HAO:0000311
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0003202
name: endocuticle
def: "The inner layer of the procuticle in certain crustaceans and arthropods, which is almost entirely composed of protein and chitin." [BTO:0001603]
xref: BTO:0001603
xref: FBbt:00004974
xref: HAO:0000290
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0003203
name: apodeme
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003204
name: epipharynx
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003205
name: articulation
comment: incorrect grouping
is_obsolete: true
[Term]
id: UBERON:0003206
name: apophysis
comment: incorrect grouping
is_obsolete: true
[Term]
id: UBERON:0003207
name: arthropod appendage segment
comment: arthropod specific groupings belong in separate ontology
is_obsolete: true
[Term]
id: UBERON:0003209
name: blood nerve barrier
def: "barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]." [GO:0008065, Wikipedia:Blood-nerve_barrier]
synonym: "blood-nerve barrier" EXACT []
is_a: UBERON:0000119 ! cell layer
relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid
relationship: adjacent_to UBERON:0001021 ! nerve
[Term]
id: UBERON:0003210
name: blood-cerebrospinal fluid barrier
def: "barrier in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood[MP]." [MP:0006088]
is_a: UBERON:0000119 ! cell layer
relationship: adjacent_to UBERON:0000178 ! blood
relationship: adjacent_to UBERON:0001359 ! cerebrospinal fluid
[Term]
id: UBERON:0003211
name: median ocellus
def: "The ocellus that is is located medially on the cranium[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000526, Wikipedia:Ocellus#Ocelli]
xref: FBbt:00004507
xref: HAO:0000526
is_a: UBERON:0003161 ! dorsal ocellus
[Term]
id: UBERON:0003212
name: gustatory organ
def: "Any sense organ that functions in (some) detection of chemical stimulus involved in sensory perception of taste (GO:0050912)." [FBC:auto_generated_definition]
synonym: "gustatory organ system organ" EXACT [OBOL:automatic]
synonym: "gustatory system organ" EXACT [OBOL:automatic]
synonym: "organ of gustatory organ system" EXACT [OBOL:automatic]
synonym: "organ of gustatory system" EXACT [OBOL:automatic]
synonym: "organ of taste system" EXACT [OBOL:automatic]
synonym: "taste organ" EXACT []
synonym: "taste system organ" EXACT [OBOL:automatic]
xref: FBbt:00005159
xref: FMA:77853
is_a: UBERON:0000005 ! chemosensory organ
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0003214
name: mammary gland alveolus
def: "a sac-like structure that is found in the mature gland[GO]." [GO:0060749]
synonym: "alveolus of lactiferous gland" EXACT [OBOL:automatic]
synonym: "alveolus of lobe of breast" EXACT [OBOL:automatic]
synonym: "alveolus of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "alveolus of mammary gland" EXACT [OBOL:automatic]
synonym: "lactiferous alveolus" EXACT []
synonym: "lactiferous gland alveolus" EXACT []
synonym: "lobe of breast alveolus" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland alveolus" EXACT [OBOL:automatic]
synonym: "mammary alveolus" EXACT []
xref: FMA:73285
xref: MA:0002760
is_a: UBERON:0003215 ! alveolus
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001911
intersection_of: UBERON:0003215 ! alveolus
intersection_of: part_of UBERON:0001911 ! mammary gland
relationship: part_of UBERON:0001911 ! mammary gland
relationship: part_of UBERON:0001912 ! lobule of lactiferous gland
[Term]
id: UBERON:0003215
name: alveolus
def: "organ part that has the form of a hollow cavity[WP]." [Wikipedia:Alveolus]
xref: EFO:0002513
xref: EV:0100043
xref: FMA:82493
xref: ncithesaurus:Alveolus
xref: OpenCyc:Mx4rwN8NFZwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003216
name: hard palate
def: "anterior portion of the palate consisting of bone and mucous membranes[GO]. The hard palate is formed from bony processes of the maxilla, premaxilla and palatine[Kardong]." [GO:0060022, Wikipedia:Hard_palate]
subset: uberon_slim
synonym: "hard palate" EXACT []
synonym: "palatum durum" RELATED LATIN [Wikipedia:Hard_palate]
xref: EMAPA:18952
xref: FMA:55023
xref: GAID:221
xref: http://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg
xref: MA:0002477
xref: MAT:0000161
xref: MESH:A.02.835.232.781.324.502.660
xref: MIAA:0000161
xref: ncithesaurus:Hard_Palate
xref: SCTID:245778002
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001716 {source="EMAPA"} ! secondary palate
[Term]
id: UBERON:0003217
name: neural lobe of neurohypophysis
def: "The posterior pituitary (or neurohypophysis) comprises the posterior lobe of the pituitary gland and is part of the endocrine system. Despite its name, the posterior pituitary gland is not a gland, per se; rather, it is largely a collection of axonal projections from the hypothalamus that terminate behind the anterior pituitary gland. [WP,unvetted]." [Wikipedia:Neurohypophysis#cite_note-1]
comment: TODO - compare with UBERON:0002198
subset: uberon_slim
synonym: "pars nervosa (neurohypophysis)" EXACT [FMA:74636, FMA:TA]
synonym: "pars nervosa neurohypophysis" EXACT [FMA:74636, FMA:TA]
synonym: "pars nervosa of hypophysis" EXACT []
synonym: "pars nervosa of neurohypophysis" EXACT []
synonym: "pars nervosa of posterior lobe of pituitary gland" EXACT []
synonym: "pars nervosa pituitary gland" EXACT [NIF_GrossAnatomy:birnlex_941]
synonym: "pars posterior" EXACT [MA:0000860]
synonym: "posterior lobe" BROAD [BTO:0000561]
synonym: "posterior lobe of neurohypophysis" EXACT [FMA:74636]
synonym: "posterior lobe-3" EXACT []
xref: BTO:0000561
xref: EHDAA2:0001418
xref: EHDAA:7542
xref: FMA:74636
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Pituitary_gland_representation.PNG/200px-Pituitary_gland_representation.PNG
xref: MA:0000860
xref: NIF_GrossAnatomy:birnlex_941
xref: SCTID:424523008
xref: VHOG:0001180
is_a: UBERON:0002784 ! regional part of diencephalon
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002198 ! neurohypophysis
[Term]
id: UBERON:0003218
name: ovary septum
def: "Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]." [GO:0080126]
is_a: UBERON:0003037 ! septum
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000992
intersection_of: UBERON:0003037 ! septum
intersection_of: part_of UBERON:0000992 ! female gonad
relationship: part_of UBERON:0000992 ! female gonad
[Term]
id: UBERON:0003219
name: shell septum
def: "Septum that divides the internal chambers (camerae) of the shell of a cephalopod, namely nautiloids or ammonoids." [GO:0080126, Wikipedia:Septum_(marine_biology)]
is_a: UBERON:0003037 ! septum
relationship: part_of UBERON:0006612
intersection_of: UBERON:0003037 ! septum
intersection_of: part_of UBERON:0006612 ! shell
relationship: part_of UBERON:0006612 ! shell
[Term]
id: UBERON:0003220
name: metanephric mesenchyme
def: "one of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros[GO]" [GO:0072075, Wikipedia:Metanephric_blastema]
comment: Genes: The positional specification of the metanephrogenic mesenchyme is negatively regulated by Foxc1 and Foxc2. Next the permanent kidney forming metanephrogenic mesenchyme is specified by Hox11 genes. The competence to respond to ureteric bud inducers is regulated by WT1. GDNF secretion restricted to posterior region by Robo2 and Sprouty1. The receptors for GDNF are synthesized in the nephric ducts and later in ureteric buds [ISBN:9780878932504 "Developmental Biology"]
synonym: "metanephric blastema" EXACT [Wikipedia:Metanephric_blastema]
synonym: "metanephric mesoderm" EXACT [Wikipedia:Metanephric_blastema]
synonym: "metanephrogenic mesenchyme" EXACT [EHDAA:5021]
synonym: "metanephros associated mesenchyme" EXACT [RETIRED_EHDAA2:0001139]
xref: EHDAA2:0004062
xref: EHDAA:4041
xref: EHDAA:5021
xref: EHDAA:5915
xref: EMAPA:17208
xref: EMAPA:17375
xref: EMAPA:29990
xref: SCTID:361529008
xref: VHOG:0000540
is_a: UBERON:0003918 ! kidney mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_into UBERON:0000081
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_into UBERON:0000081 ! metanephros
relationship: develops_from UBERON:0003074 ! mesonephric duct
relationship: develops_into UBERON:0000081 ! metanephros
relationship: induced_by UBERON:0000084 {source="ISBN:9780878932504"} ! ureteric bud
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003221
name: phalanx
def: "Endochondral bones that are often elongate and arranged in rows of articulating elements, and form the visible part of the digits." [VSAO:0000199, Wikipedia:Phalanx_bones]
comment: Taxon notes: In primates such as humans and monkeys, the thumb and big toe have two phalanges, while the other fingers and toes consist of three[WP]
synonym: "digit long bone" EXACT [OBOL:automatic]
synonym: "long bone of digit" EXACT [OBOL:automatic]
synonym: "phalange" EXACT []
synonym: "phalanges" EXACT PLURAL []
synonym: "phalanx bone" EXACT [Wikipedia:Phalanx_bones]
xref: galen:Phalanx
xref: MA:0000304
xref: ncithesaurus:Phalanx
xref: OpenCyc:Mx4rvolPZpwpEbGdrcN5Y29ycA
xref: SCTID:290029003
xref: VSAO:0000199
is_a: UBERON:0003606 ! limb long bone
is_a: UBERON:0011250 ! autopod bone
relationship: part_of UBERON:0002544
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002544 ! digit
relationship: develops_from UBERON:0010701 ! phalanx cartilage condensation
relationship: part_of UBERON:0002544 ! digit
relationship: part_of UBERON:0006717 ! skeleton of autopod
[Term]
id: UBERON:0003222
name: flexor digitorum superficialis
def: "an extrinsic flexor muscle of the fingers at the proximal interphalangeal joints. The muscle has two classically described heads - the humeroulnar and radial - and it is between these heads that the median nerve and ulnar artery pass. The ulnar collateral ligament of elbow joint gives its origin to part of this muscle. The primary function of flexor digitorum superficialis is flexion of the middle phalanges of the fingers at the proximal interphalangeal joints, however under continued action it also flexes the metacarpophalangeal joints and wrist joint[WP]." [Wikipedia:Flexor_digitorum_superficialis_muscle]
synonym: "flexor digitorum superficialis muscle" EXACT [Wikipedia:Flexor_digitorum_superficialis_muscle]
synonym: "musculus flexor digitorum superficialis" RELATED LATIN [Wikipedia:Flexor_digitorum_superficialis_muscle]
xref: FMA:38469
xref: http://upload.wikimedia.org/wikipedia/commons/5/53/Gray421.png
is_a: UBERON:0004254 {source="FMA"} ! forelimb zeugopod muscle
relationship: has_muscle_antagonist UBERON:0007612 {source="dbpedia"} ! extensor digitorum communis
relationship: has_muscle_insertion UBERON:0004301 {source="dbpedia", notes="anterior margins on the bases of the middle phalanges of the four fingers"} ! middle phalanx
relationship: has_muscle_nerve UBERON:0001148 {source="dbpedia"} ! median nerve
relationship: has_muscle_origin UBERON:0006806 {source="dbpedia", notes="medial epicondyle of the humerus as well as parts of the radius and ulna."} ! entepicondyle of humerus
[Term]
id: UBERON:0003224
name: chorion syncytiotrophoblast
comment: todo - check
xref: EHDAA2:0001973
xref: EHDAA:156
is_a: UBERON:0000478 ! extraembryonic structure
relationship: develops_from UBERON:0000371
relationship: part_of UBERON:0003124
intersection_of: UBERON:0000478 ! extraembryonic structure
intersection_of: develops_from UBERON:0000371 ! syncytiotrophoblast
intersection_of: part_of UBERON:0003124 ! chorion
relationship: develops_from UBERON:0000371 ! syncytiotrophoblast
relationship: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0003225
name: primitive endoderm of inner cell mass
def: "A primitive endoderm that is part of a inner cell mass [Obol]." [OBOL:automatic]
comment: TODO - check. Note in MP, hypoblast and primitive endoderm are exact synonyms
subset: early_development
synonym: "hypoblast" RELATED [MP:0011185]
synonym: "inner cell mass primitive endoderm" EXACT [OBOL:automatic]
xref: EHDAA:44
is_a: UBERON:0000417 ! primitive endoderm
relationship: part_of UBERON:0000087
intersection_of: UBERON:0000417 ! primitive endoderm
intersection_of: part_of UBERON:0000087 ! inner cell mass
relationship: part_of UBERON:0000087 ! inner cell mass
[Term]
id: UBERON:0003228
name: supinator muscle
def: "a muscle which originates on the distal humerus, inserts on the radius and accomplishes supination (rotation of the wrist)." [Wikipedia:Supinator_muscle]
comment: TODO: The term "supinator" can also refer more generally to a muscle that causes supination of a part of the body. In older texts, the term "supinator longus" was used to refer to the brachioradialis, and "supinator brevis" was used to the muscle now known as the supinator.
synonym: "musculus supinator" RELATED LATIN [Wikipedia:Supinator_muscle]
synonym: "supinator" EXACT []
synonym: "supinator brevus" RELATED DEPRECATED [Wikipedia:Supinator_muscle]
xref: FMA:38512
xref: FMA:75002
xref: http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray420.png
xref: SCTID:181634007
is_a: UBERON:0004254 {source="FMA"} ! forelimb zeugopod muscle
relationship: has_muscle_antagonist UBERON:0001520 {source="dbpedia"} ! pronator teres
relationship: has_muscle_insertion UBERON:0001423 {source="palaeos"} ! radius bone
relationship: has_muscle_nerve UBERON:0001492 {notes="deep branch of radial nerve", source="dbpedia"} ! radial nerve
relationship: has_muscle_origin UBERON:0001424 {notes="Lateral epicondyle of humerus supinator crest of ulna radial collateral ligament annular ligament", source="dbpedia"} ! ulna
relationship: has_muscle_origin UBERON:0006807 {notes="Lateral epicondyle of humerus supinator crest of ulna radial collateral ligament annular ligament", source="dbpedia"} ! ectepicondyle of humerus
[Term]
id: UBERON:0003229
name: epithelium of elbow
def: "An epithelium that is part of a elbow [Obol]." [OBOL:automatic]
synonym: "cubital region epithelial tissue" EXACT [OBOL:automatic]
synonym: "cubital region epithelium" EXACT [OBOL:automatic]
synonym: "elbow epithelial tissue" EXACT [OBOL:automatic]
synonym: "elbow epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cubital region" EXACT [OBOL:automatic]
synonym: "epithelial tissue of elbow" EXACT [OBOL:automatic]
synonym: "epithelium of cubital region" EXACT [OBOL:automatic]
xref: EHDAA2:0000430
xref: EHDAA:4168
xref: EHDAA:6214
xref: EMAPA:17415
xref: VHOG:0001044
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001461
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001461 ! elbow
relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm
relationship: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0003230
name: epithelium of carpal region
def: "An epithelium that is part of a wrist [Obol]." [OBOL:automatic]
synonym: "carpal region epithelial tissue" EXACT [OBOL:automatic]
synonym: "carpal region epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of carpal region" EXACT [OBOL:automatic]
synonym: "epithelial tissue of wrist" EXACT [OBOL:automatic]
synonym: "epithelium of wrist" EXACT [OBOL:automatic]
synonym: "wrist epithelial tissue" EXACT [OBOL:automatic]
synonym: "wrist epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0000219
xref: EHDAA:5198
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0004452
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0004452 ! carpal region
relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm
relationship: part_of UBERON:0004452 ! carpal region
[Term]
id: UBERON:0003231
name: epithelium of hip
def: "An epithelium that is part of a hip [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of hip" EXACT [OBOL:automatic]
synonym: "epithelial tissue of hip region" EXACT [OBOL:automatic]
synonym: "epithelial tissue of regio coxae" EXACT [OBOL:automatic]
synonym: "epithelium of hip region" EXACT [OBOL:automatic]
synonym: "epithelium of regio coxae" EXACT [OBOL:automatic]
synonym: "hip epithelial tissue" EXACT [OBOL:automatic]
synonym: "hip epithelium" EXACT [OBOL:automatic]
synonym: "hip region epithelial tissue" EXACT [OBOL:automatic]
synonym: "hip region epithelium" EXACT [OBOL:automatic]
synonym: "regio coxae epithelial tissue" EXACT [OBOL:automatic]
synonym: "regio coxae epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0000784
xref: EHDAA:5155
xref: EHDAA:6180
xref: EMAPA:17491
xref: VHOG:0000779
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001464
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001464 ! hip
relationship: develops_from UBERON:0003371 {source="EHDAA2"} ! pelvic appendage bud ectoderm
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0003232
name: epithelium of knee
def: "An epithelium that is part of a knee [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of knee" EXACT [OBOL:automatic]
synonym: "knee epithelial tissue" EXACT [OBOL:automatic]
synonym: "knee epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0000896
xref: EHDAA:5161
xref: EHDAA:6186
xref: EMAPA:17494
xref: VHOG:0000810
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001465
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001465 ! knee
relationship: develops_from UBERON:0003371 {source="EHDAA2"} ! pelvic appendage bud ectoderm
relationship: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0003233
name: epithelium of shoulder
def: "An epithelium that is part of a shoulder [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of shoulder" EXACT [OBOL:automatic]
synonym: "shoulder epithelial tissue" EXACT [OBOL:automatic]
synonym: "shoulder epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0001835
xref: EHDAA:4182
xref: EHDAA:6230
xref: EMAPA:17422
xref: VHOG:0000761
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001467
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003234
name: extensor pollicis longus muscle
def: "The Extensor pollicis longus is much larger than the Extensor pollicis brevis muscle, the origin of which it partly covers." [Wikipedia:Extensor_pollicis_longus_muscle]
synonym: "extensor pollicis longis" RELATED [Wikipedia:Extensor_pollicis_longus_muscle]
synonym: "extensor pollicis longus" EXACT [FMA:38521]
synonym: "musculus extensor pollicis longus" RELATED LATIN [Wikipedia:Extensor_pollicis_longus_muscle]
xref: FMA:38521
xref: http://upload.wikimedia.org/wikipedia/commons/3/3e/Extensor_pollicis_longus_muscle.png
xref: SCTID:361820003
is_a: UBERON:0011024 {source="Wikipedia"} ! extrinsic extensor muscle of hand
relationship: has_muscle_antagonist UBERON:0008446 {source="dbpedia"} ! flexor pollicis longus muscle
relationship: has_muscle_antagonist UBERON:0011012 {source="dbpedia"} ! flexor pollicis brevis muscle
relationship: has_muscle_insertion UBERON:0001463 {source="dbpedia"} ! hand digit 1
relationship: has_muscle_insertion UBERON:0004300 {source="dbpedia"} ! distal phalanx
relationship: has_muscle_origin UBERON:0001424 {source="dbpedia"} ! ulna
[Term]
id: UBERON:0003235
name: epithelium of upper jaw
def: "An epithelium that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "epithelial tissue of upper jaw" EXACT [OBOL:automatic]
synonym: "epithelium of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch epithelial tissue" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch epithelium" EXACT [OBOL:automatic]
synonym: "upper jaw epithelial tissue" EXACT [OBOL:automatic]
synonym: "upper jaw epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0002119
xref: EHDAA:8027
xref: EMAPA:17943
xref: EMAPA:18971
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001709
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001709 ! upper jaw region
relationship: part_of UBERON:0001709 ! upper jaw region
[Term]
id: UBERON:0003236
name: epithelium of lower jaw
def: "An epithelium that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of lower jaw" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "epithelium of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower jaw epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower jaw epithelium" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch epithelial tissue" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0001019
xref: EHDAA:7999
xref: EMAPA:17922
xref: EMAPA:18968
xref: VHOG:0000802
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001710
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001710 ! lower jaw region
relationship: part_of UBERON:0001710 ! lower jaw region
[Term]
id: UBERON:0003238
name: epithelium of superior semicircular canal
def: "An epithelium that is part of an anterior semicircular canal [Obol]." [OBOL:automatic]
synonym: "anterior semicircular canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "anterior semicircular canal epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of anterior semicircular canal" EXACT [OBOL:automatic]
synonym: "epithelial tissue of superior semicircular canal" EXACT [OBOL:automatic]
synonym: "epithelium of anterior semicircular canal" EXACT [OBOL:automatic]
synonym: "superior semicircular canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "superior semicircular canal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:7806
xref: EMAPA:17301
xref: RETIRED_EHDAA2:0001961
xref: VHOG:0001039
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001841
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001841 ! anterior semicircular canal
relationship: part_of UBERON:0001841 ! anterior semicircular canal
[Term]
id: UBERON:0003239
name: epithelium of posterior semicircular canal
def: "An epithelium that is part of a posterior semicircular canal [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of posterior semicircular canal" EXACT [OBOL:automatic]
synonym: "posterior semicircular canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "posterior semicircular canal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:7800
xref: EMAPA:17298
xref: RETIRED_EHDAA2:0001491
xref: VHOG:0000758
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001842
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001842 ! posterior semicircular canal
relationship: part_of UBERON:0001842 ! posterior semicircular canal
[Term]
id: UBERON:0003240
name: epithelium of lateral semicircular canal
def: "An epithelium that is part of a lateral semicircular canal [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of lateral semicircular canal" EXACT [OBOL:automatic]
synonym: "lateral semicircular canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "lateral semicircular canal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:7794
xref: EMAPA:17823
xref: RETIRED_EHDAA2:0000922
xref: VHOG:0000480
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001843
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001843 ! lateral semicircular canal
relationship: part_of UBERON:0001843 ! lateral semicircular canal
[Term]
id: UBERON:0003241
name: epithelium of utricle
def: "An epithelium that is part of a utricle of membranous labyrinth [Obol]." [OBOL:automatic]
comment: todo - check relationships w.r.t macula
synonym: "epithelial tissue of membranous labyrinth utricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of utricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of utricle of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelial tissue of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "epithelium of macula of utricle of membranous labyrinth" NARROW [FMA:75604]
synonym: "epithelium of membranous labyrinth utricle" EXACT [OBOL:automatic]
synonym: "epithelium of utricle of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelium of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "membranous labyrinth utricle epithelial tissue" EXACT [OBOL:automatic]
synonym: "membranous labyrinth utricle epithelium" EXACT [OBOL:automatic]
synonym: "utricle epithelial tissue" EXACT [OBOL:automatic]
synonym: "utricle epithelium" EXACT [OBOL:automatic]
synonym: "utricle of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic]
synonym: "utricle of membranous labyrinth epithelium" EXACT [OBOL:automatic]
synonym: "utriculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic]
synonym: "utriculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4730
xref: EMAPA:17295
xref: EMAPA:17298
xref: EMAPA:17301
xref: EMAPA:17820
xref: EMAPA:17823
xref: FMA:75604
xref: MA:0001204
xref: RETIRED_EHDAA2:0002155
xref: VHOG:0000634
is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium
relationship: part_of UBERON:0001853
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth
relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth
relationship: part_of UBERON:0002214 {source="FMA"} ! macula of utricle of membranous labyrinth
[Term]
id: UBERON:0003242
name: epithelium of saccule
def: "An epithelium that is part of a saccule of membranous labyrinth [Obol]." [OBOL:automatic]
comment: todo - check relationships w.r.t macula
synonym: "epithelial tissue of membranous labyrinth saccule" EXACT [OBOL:automatic]
synonym: "epithelial tissue of saccule" EXACT [OBOL:automatic]
synonym: "epithelial tissue of saccule of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelial tissue of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "epithelium of macula of saccule of membranous labyrinth" RELATED [FMA:75605]
synonym: "epithelium of membranous labyrinth saccule" EXACT [OBOL:automatic]
synonym: "epithelium of saccule of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelium of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "membranous labyrinth saccule epithelial tissue" EXACT [OBOL:automatic]
synonym: "membranous labyrinth saccule epithelium" EXACT [OBOL:automatic]
synonym: "saccule epithelial tissue" EXACT [OBOL:automatic]
synonym: "saccule epithelium" EXACT [OBOL:automatic]
synonym: "saccule of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic]
synonym: "saccule of membranous labyrinth epithelium" EXACT [OBOL:automatic]
synonym: "sacculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic]
synonym: "sacculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4724
xref: EMAPA:17292
xref: FMA:75605
xref: MA:0001202
xref: RETIRED_EHDAA2:0001771
xref: VHOG:0000633
is_a: UBERON:0006932 ! vestibular epithelium
relationship: part_of UBERON:0001854
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth
relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth
[Term]
id: UBERON:0003243
name: epithelium of cochlear duct
def: "An epithelium that is part of a cochlear duct of membranous labyrinth [Obol]." [OBOL:automatic]
synonym: "cochlear duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "cochlear duct epithelium" EXACT [OBOL:automatic]
synonym: "cochlear duct of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic]
synonym: "cochlear duct of membranous labyrinth epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cochlear duct" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelial tissue of Reissner's canal" EXACT [OBOL:automatic]
synonym: "epithelium of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelium of Reissner's canal" EXACT [OBOL:automatic]
synonym: "Reissner's canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "Reissner's canal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4722
xref: EMAPA:17600
xref: RETIRED_EHDAA2:0000264
xref: VHOG:0000640
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001855
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0003244
name: epithelium of mammary gland
def: "An epithelium that is part of a lactiferous gland [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "epithelial tissue of mammary gland" EXACT [OBOL:automatic]
synonym: "epithelium of lactiferous gland" EXACT [FMA:74445]
synonym: "epithelium of lobe of breast" EXACT [OBOL:automatic]
synonym: "epithelium of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "lactiferous gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "lactiferous gland epithelium" EXACT [OBOL:automatic]
synonym: "lobe of breast epithelial tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast epithelium" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland epithelium" EXACT [OBOL:automatic]
synonym: "mammary epithelium" EXACT [BTO:0001430]
synonym: "mammary gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "mammary gland epithelium" EXACT [OBOL:automatic]
xref: BTO:0001430
xref: EHDAA2:0001057
xref: EHDAA:6526
xref: EMAPA:17760
xref: FMA:74445
xref: MA:0000792
xref: ncithesaurus:Mammary_Epithelium
xref: VHOG:0001088
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001911
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001911 ! mammary gland
relationship: develops_from UBERON:0011272 {source="EHDAA2", source="Wikipathways:WP2062"} ! skin basal layer
relationship: part_of UBERON:0001911 ! mammary gland
relationship: part_of UBERON:0005200 {gci_filler="NCBITaxon:9606", source="EHDAA2", gci_relation="part_of"} ! thoracic mammary gland
[Term]
id: UBERON:0003246
name: epithelium of endolymphatic sac
def: "An epithelium that is part of a endolymphatic sac [Obol]." [OBOL:automatic]
synonym: "endolymphatic sac epithelial tissue" EXACT [OBOL:automatic]
synonym: "endolymphatic sac epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of endolymphatic sac" EXACT [OBOL:automatic]
xref: EHDAA:7765
xref: EMAPA:17595
xref: RETIRED_EHDAA2:0000443
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0002223
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002223 ! endolymphatic sac
relationship: part_of UBERON:0002223 ! endolymphatic sac
[Term]
id: UBERON:0003247
name: epithelium of forearm
def: "An epithelium that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region epithelial tissue" EXACT [OBOL:automatic]
synonym: "antebrachial region epithelium" EXACT [OBOL:automatic]
synonym: "arm middle limb segment epithelial tissue" EXACT [OBOL:automatic]
synonym: "arm middle limb segment epithelium" EXACT [OBOL:automatic]
synonym: "arm zeugopod epithelial tissue" EXACT [OBOL:automatic]
synonym: "arm zeugopod epithelium" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment epithelial tissue" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment epithelium" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod epithelial tissue" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of antebrachial region" EXACT [OBOL:automatic]
synonym: "epithelial tissue of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "epithelial tissue of arm zeugopod" EXACT [OBOL:automatic]
synonym: "epithelial tissue of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "epithelial tissue of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "epithelial tissue of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lower arm" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lower segment of arm" EXACT [OBOL:automatic]
synonym: "epithelial tissue of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "epithelial tissue of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "epithelial tissue of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "epithelial tissue of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "epithelial tissue of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "epithelial tissue of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "epithelial tissue of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "epithelial tissue of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "epithelium of antebrachial region" EXACT [OBOL:automatic]
synonym: "epithelium of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "epithelium of arm zeugopod" EXACT [OBOL:automatic]
synonym: "epithelium of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "epithelium of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "epithelium of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "epithelium of lower arm" EXACT [OBOL:automatic]
synonym: "epithelium of lower segment of arm" EXACT [OBOL:automatic]
synonym: "epithelium of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "epithelium of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "epithelium of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "epithelium of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "epithelium of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "epithelium of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "epithelium of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "epithelium of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb epithelial tissue" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb epithelium" EXACT [OBOL:automatic]
synonym: "lower arm epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower arm epithelium" EXACT [OBOL:automatic]
synonym: "lower segment of arm epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower segment of arm epithelium" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm epithelial tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm epithelium" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region epithelial tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region epithelium" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb epithelial tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb epithelium" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment epithelial tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment epithelium" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod epithelial tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod epithelium" EXACT [OBOL:automatic]
synonym: "zeugopod of arm epithelial tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of arm epithelium" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region epithelial tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region epithelium" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb epithelial tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0000554
xref: EHDAA:4174
xref: EHDAA:6220
xref: EMAPA:17418
xref: VHOG:0001096
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0002386
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0003248
name: epithelium of footplate
synonym: "foot plate epithelium" EXACT []
synonym: "footplate epithelium" EXACT [EHDAA2:0000548]
xref: EHDAA2:0000548
xref: EHDAA:5145
xref: EHDAA:6144
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0006871
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0006871 ! footplate
relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm
relationship: part_of UBERON:0006871 ! footplate
[Term]
id: UBERON:0003249
name: epithelium of otic placode
def: "An epithelium that is part of a otic placode [Obol]." [OBOL:automatic]
comment: editor note - check ZFA, placemeant, appears to refer to both adult structures and primordium
synonym: "epithelial tissue of otic placode" EXACT [OBOL:automatic]
synonym: "otic epithelium" EXACT [UBERON:cjm]
synonym: "otic placode epithelial tissue" EXACT [OBOL:automatic]
synonym: "otic placode epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0001341
xref: EHDAA:510
xref: EMAPA:16197
xref: VHOG:0000636
xref: ZFA:0007068
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0003069
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003069 ! otic placode
relationship: part_of UBERON:0003069 ! otic placode
[Term]
id: UBERON:0003250
name: rectus capitis lateralis
def: "The Rectus capitis lateralis, a short, flat muscle, arises from the upper surface of the transverse process of the atlas, and is inserted into the under surface of the jugular process of the occipital bone." [Wikipedia:Rectus_capitis_lateralis_muscle]
subset: organ_slim
synonym: "lateral rectus capitis" EXACT [FMA:46316]
synonym: "musculus rectus capitis lateralis" RELATED LATIN [Wikipedia:Rectus_capitis_lateralis_muscle]
synonym: "rectus capitis lateralis" RELATED [Wikipedia:Rectus_capitis_lateralis_muscle]
synonym: "rectus capitus lateralis" RELATED [Wikipedia:Rectus_capitis_lateralis_muscle]
synonym: "rectus capitus lateralis muscle" RELATED [Wikipedia:Rectus_capitis_lateralis_muscle]
xref: FMA:46316
xref: http://upload.wikimedia.org/wikipedia/commons/b/b7/Rectus_capitis_lateralis_muscle.PNG
xref: SCTID:244841001
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column
relationship: has_muscle_origin UBERON:0001077 {source="dbpedia", notes="upper surface of the transverse process of the atlas"} ! transverse process of vertebra
relationship: has_muscle_origin UBERON:0001092 {source="dbpedia", notes="upper surface of the transverse process of the atlas"} ! first cervical vertebra
[Term]
id: UBERON:0003251
name: temporal part of head
comment: Editor notes: see UBERONREF:0000007 'temporal region'
synonym: "temporal region" RELATED [FMA:63867]
synonym: "temporal region of head" RELATED [FMA:63867]
xref: FMA:63867
xref: SCTID:362620003
is_a: UBERON:0001444 {source="FMA"} ! subdivision of head
[Term]
id: UBERON:0003252
name: rib cage
def: "Subdivision of skeletal system that consists of all ribs in an organism." [UBERON:cjm, Wikipedia:Human_rib_cage]
comment: todo - add child terms; generalize definition
synonym: "cavea thoracis" EXACT [FMA:7480, FMA:TA]
synonym: "cavea thoracis" RELATED LATIN [Wikipedia:Human_rib_cage]
synonym: "rib series" EXACT [TAO:0002100]
synonym: "thoracic cage" EXACT [FMA:7480]
xref: FMA:7480
xref: galen:RibCage
xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Gray112.png
xref: SCTID:361741004
xref: TAO:0002100
property_value: RO:0002161 NCBITaxon:7778
property_value: UBPROP:0000001 "Anatomical cluster that consists of more than one rib in an individual.[TAO]" xsd:string
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000915 {source="FMA"} ! thoracic segment of trunk
relationship: part_of UBERON:0002090 {source="TAO"} ! postcranial axial skeleton
[Term]
id: UBERON:0003253
name: neck of rib
def: "The neck of the rib is the flattened portion which extends lateralward from the head; it is about 2.5 cm. long, and is placed in front of the transverse process of the lower of the two vertebrC& with which the head articulates. Its anterior surface is flat and smooth, its posterior rough for the attachment of the ligament of the neck, and perforated by numerous foramina. Of its two borders the superior presents a rough crest (crista colli costE) for the attachment of the anterior costotransverse ligament; its inferior border is rounded. On the posterior surface at the junction of the neck and body, and nearer the lower than the upper border, is an eminencebthe tubercle; it consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrC& to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs." [Wikipedia:Neck_of_rib]
synonym: "collum costae" EXACT [Wikipedia:Neck_of_rib]
synonym: "collum costae" RELATED LATIN [Wikipedia:Neck_of_rib]
synonym: "rib neck" EXACT [FMA:7576]
xref: FMA:7576
xref: http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray122.png
xref: SCTID:263359009
is_a: UBERON:0001560 ! neck of organ
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002228
intersection_of: UBERON:0001560 ! neck of organ
intersection_of: part_of UBERON:0002228 ! rib
relationship: part_of UBERON:0002228 ! rib
relationship: part_of UBERON:0010388 {source="PMID:15906248"} ! proximal segment of rib
[Term]
id: UBERON:0003254
name: amniotic ectoderm
comment: Editor note: we make the germ layer relationship develops_from, as currently the germ layers are declared to be purely embryonic. TODO - check. WP:Amnion - In the human embryo the earliest stages of the formation of the amnion have not been observed; in the youngest embryo which has been studied the amnion was already present as a closed sac, and appears in the inner cell-mass as a cavity. This cavity is roofed in by a single stratum of flattened, ectodermal cells, the amniotic ectoderm, and its floor consists of the prismatic ectoderm of the embryonic disk—the continuity between the roof and floor being established at the margin of the embryonic disk. Outside the amniotic ectoderm is a thin layer of mesoderm, which is continuous with that of the somatopleure and is connected by the body-stalk with the mesodermal lining of the chorion.
synonym: "amnion ectoderm" EXACT [EHDAA2:0000117]
synonym: "amnion ectoderm" EXACT [OBOL:automatic]
xref: EHDAA2:0000117
xref: EHDAA:138
xref: EMAPA:16110
xref: VHOG:0000621
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0000305 ! amnion
[Term]
id: UBERON:0003255
name: ectoderm of embryo
comment: deleted because the original definition was unclear. Me may reconstitute this and to distinguish extramebryonic from embryonic germ layers. See amniotic ectoderm and amniotic mesoderm
synonym: "developmental tissue ectoderm" EXACT [OBOL:automatic]
synonym: "ectoderm of developmental tissue" EXACT [OBOL:automatic]
synonym: "embryo ectoderm" EXACT [OBOL:automatic]
xref: EHDAA:132
is_obsolete: true
[Term]
id: UBERON:0003256
name: endoderm of embryo
comment: deleted because the original definition was unclear. Me may reconstitute this and to distinguish extramebryonic from embryonic germ layers. See amniotic ectoderm and amniotic mesoderm
synonym: "developmental tissue endoderm" EXACT [OBOL:automatic]
synonym: "embryo endoderm" EXACT [OBOL:automatic]
synonym: "endoderm of developmental tissue" EXACT [OBOL:automatic]
xref: EHDAA:94
is_obsolete: true
[Term]
id: UBERON:0003257
name: yolk sac endoderm
comment: TODO - check
xref: EHDAA2:0002215
xref: EHDAA:166
xref: EMAPA:16086
xref: VHOG:0000626
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure
relationship: develops_from UBERON:0000925
relationship: part_of UBERON:0001040
intersection_of: UBERON:0000478 ! extraembryonic structure
intersection_of: develops_from UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001040 ! yolk sac
relationship: develops_from UBERON:0000925 ! endoderm
relationship: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0003258
name: endoderm of foregut
def: "An endoderm that is part of a foregut [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "foregut endoderm" EXACT [OBOL:automatic]
xref: EHDAA2:0000566
xref: EHDAA:524
is_a: UBERON:0000925 ! endoderm
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001041
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001041 ! foregut
relationship: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0003259
name: endoderm of midgut
def: "An endoderm that is part of a midgut [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "midgut endoderm" EXACT [OBOL:automatic]
xref: EHDAA:987
xref: EMAPA:16257
xref: RETIRED_EHDAA2:0001194
xref: VHOG:0001080
is_a: UBERON:0000925 ! endoderm
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001045
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001045 ! midgut
relationship: part_of UBERON:0001045 ! midgut
[Term]
id: UBERON:0003260
name: endoderm of hindgut
def: "An endoderm that is part of a hindgut [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "hindgut endoderm" EXACT [OBOL:automatic]
xref: EHDAA:979
xref: RETIRED_EHDAA2:0000781
is_a: UBERON:0000925 ! endoderm
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001046
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001046 ! hindgut
relationship: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0003261
name: thyroid primordium endoderm
alt_id: UBERON:0005235
synonym: "endoderm of thyroid primordium" EXACT [OBOL:automatic]
xref: EHDAA:956
xref: EMAPA:16560
xref: EMAPA:25357
xref: RETIRED_EHDAA2:0002035
xref: VHOG:0001089
is_a: UBERON:0000925 ! endoderm
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0003091
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0003091 ! thyroid primordium
relationship: develops_from UBERON:0007690 {source="ZFA-propagated"} ! early pharyngeal endoderm
relationship: part_of UBERON:0003091 ! thyroid primordium
[Term]
id: UBERON:0003262
name: amniotic mesoderm
comment: Editor note: we make the germ layer relationship develops_from, as currently the germ layers are declared to be purely embryonic. TODO - check. WP:Amnion - In the human embryo the earliest stages of the formation of the amnion have not been observed; in the youngest embryo which has been studied the amnion was already present as a closed sac, and appears in the inner cell-mass as a cavity. This cavity is roofed in by a single stratum of flattened, ectodermal cells, the amniotic ectoderm, and its floor consists of the prismatic ectoderm of the embryonic disk—the continuity between the roof and floor being established at the margin of the embryonic disk. Outside the amniotic ectoderm is a thin layer of mesoderm, which is continuous with that of the somatopleure and is connected by the body-stalk with the mesodermal lining of the chorion.
synonym: "amnion mesoderm" EXACT [OBOL:automatic]
xref: EHDAA2:0000118
xref: EHDAA:140
xref: EMAPA:16111
xref: VHOG:0000622
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0005728 {source="EHDAA2"} ! extraembryonic mesoderm
relationship: part_of UBERON:0000305 ! amnion
[Term]
id: UBERON:0003264
name: mesoderm of yolk sac
def: "A mesoderm that is part of a yolk sac [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "yolk sac mesoderm" EXACT [OBOL:automatic]
xref: EHDAA:168
xref: EMAPA:16087
xref: VHOG:0000617
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0001040
intersection_of: UBERON:0000926 ! mesoderm
intersection_of: part_of UBERON:0001040 ! yolk sac
relationship: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0003265
name: chorionic mesoderm
comment: TODO - check
synonym: "chorion mesoderm" EXACT [RETIRED_EHDAA2:0000247]
xref: EHDAA:154
xref: EMAPA:16114
xref: RETIRED_EHDAA2:0000247
xref: VHOG:0000620
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0000926
relationship: part_of UBERON:0003124
intersection_of: UBERON:0000478 ! extraembryonic structure
intersection_of: develops_from UBERON:0000926 ! mesoderm
intersection_of: part_of UBERON:0003124 ! chorion
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: develops_from UBERON:0004871 {source="ISBN10:0073040584"} ! somatic layer of lateral plate mesoderm
relationship: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0003266
name: nerve of central nervous system
comment: obsoleted pending formal definition of nerve, with explicit reference to PNS vs CNS
is_obsolete: true
[Term]
id: UBERON:0003267
name: tooth of upper jaw
def: "A calcareous tooth that is part of a upper jaw [Obol]." [OBOL:automatic]
comment: Editor notes: Note that we follow EHDAA2 and consider teeth part of the jaw skeleton
xref: EHDAA2:0002129
xref: EHDAA:8045
xref: EMAPA:17938
xref: MA:0001909
xref: ncithesaurus:Upper_Jaw_Tooth
is_a: UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0001709
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0001709 ! upper jaw region
relationship: attaches_to UBERON:0011597 ! bone of upper jaw
relationship: part_of UBERON:0001709 ! upper jaw region
relationship: part_of UBERON:0009680 ! set of upper jaw teeth
[Term]
id: UBERON:0003268
name: tooth of lower jaw
def: "A calcareous tooth that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "calcareous tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "calcareous tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower jaw calcareous tooth" EXACT [OBOL:automatic]
synonym: "lower jaw dentine containing tooth" EXACT [OBOL:automatic]
synonym: "lower jaw tooth" EXACT [OBOL:automatic]
synonym: "lower jaw vertebrate tooth" EXACT [OBOL:automatic]
synonym: "tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch calcareous tooth" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch dentine containing tooth" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch tooth" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch vertebrate tooth" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of ventral mandibular arch" EXACT [OBOL:automatic]
xref: EHDAA2:0001029
xref: EHDAA:8009
xref: EMAPA:17917
xref: MA:0001907
xref: ncithesaurus:Lower_Jaw_Tooth
is_a: UBERON:0001091 ! calcareous tooth
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001710
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0001710 ! lower jaw region
relationship: attaches_to UBERON:0004768 ! bone of lower jaw
relationship: part_of UBERON:0001710 ! lower jaw region
relationship: part_of UBERON:0009679 ! set of lower jaw teeth
[Term]
id: UBERON:0003269
name: skeletal muscle of eye
def: "A portion of skeletal muscle tissue that is part of a eye [Obol]." [OBOL:automatic]
synonym: "eye skeletal muscle" EXACT [OBOL:automatic]
synonym: "eye skeletal muscle group" RELATED [EHDAA2:0000486]
synonym: "eye skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of eye" EXACT [OBOL:automatic]
xref: EHDAA2:0000486
xref: EHDAA:2923
xref: EMAPA:17844
is_a: UBERON:0003899 ! skeletal muscle of head
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000019
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0003270
name: skeletal muscle of leg
def: "A portion of skeletal muscle tissue that is part of a tetrapod leg [Obol]." [OBOL:automatic]
synonym: "leg skeletal muscle" EXACT [OBOL:automatic]
synonym: "leg skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of leg" EXACT [OBOL:automatic]
xref: EHDAA:8291
xref: EMAPA:19144
xref: EMAPA:19318
xref: RETIRED_EHDAA2:0000974
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0000978
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003271
name: skeletal muscle of pelvic girdle
def: "A portion of skeletal muscle tissue that is part of a pelvic girdle [Obol]." [OBOL:automatic]
synonym: "girdle-pelvic skeletal muscle" EXACT [OBOL:automatic]
synonym: "girdle-pelvic skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "pelvic girdle bone skeletal muscle" EXACT [OBOL:automatic]
synonym: "pelvic girdle bone skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "pelvic girdle skeletal muscle" EXACT [OBOL:automatic]
synonym: "pelvic girdle skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of girdle-pelvic" EXACT [OBOL:automatic]
synonym: "skeletal muscle of pelvic girdle bone" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of girdle-pelvic" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of pelvic girdle" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of pelvic girdle bone" EXACT [OBOL:automatic]
xref: EHDAA:8326
xref: EMAPA:18185
xref: RETIRED_EHDAA2:0001430
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0001271
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001271 ! pelvic girdle region
relationship: part_of UBERON:0001271 ! pelvic girdle region
[Term]
id: UBERON:0003272
name: skeletal muscle of arm
def: "A portion of skeletal muscle tissue that is part of an arm [Obol]." [OBOL:automatic]
synonym: "arm skeletal muscle" EXACT [OBOL:automatic]
synonym: "arm skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "brachial region skeletal muscle" EXACT [OBOL:automatic]
synonym: "brachial region skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb skeletal muscle" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of brachial region" EXACT [OBOL:automatic]
synonym: "skeletal muscle of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of arm" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of brachial region" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of proximal segment of free upper limb" EXACT [OBOL:automatic]
xref: EHDAA:8277
xref: EMAPA:19107
xref: RETIRED_EHDAA2:0000142
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0001460
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003273
name: skeletal muscle of tongue
def: "A portion of skeletal muscle tissue that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "skeletal muscle tissue of tongue" EXACT [OBOL:automatic]
synonym: "tongue skeletal muscle" EXACT [OBOL:automatic]
synonym: "tongue skeletal muscle tissue" EXACT [OBOL:automatic]
xref: EHDAA2:0002065
xref: EHDAA:9146
xref: EMAPA:17883
xref: EMAPA:18879
xref: MA:0001596
xref: ncithesaurus:Tongue_Skeletal_Muscle_Tissue
xref: VHOG:0001390
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003899 ! skeletal muscle of head
relationship: part_of UBERON:0001723
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001723 ! tongue
relationship: develops_from UBERON:0005594 {source="ISBN10:1607950324"} ! head somite
relationship: part_of UBERON:0000378 ! tongue muscle
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0003274
name: mesothelium of omental bursa
def: "A mesothelium that is part of a lesser sac [Obol]." [OBOL:automatic]
synonym: "lesser sac meso-epithelium" EXACT [OBOL:automatic]
synonym: "lesser sac mesothelium" EXACT [OBOL:automatic]
synonym: "meso-epithelium of lesser sac" EXACT [OBOL:automatic]
synonym: "meso-epithelium of omental bursa" EXACT [OBOL:automatic]
synonym: "mesothelium of lesser sac" EXACT [OBOL:automatic]
synonym: "omental bursa meso-epithelium" EXACT [OBOL:automatic]
synonym: "omental bursa mesothelium" EXACT [OBOL:automatic]
xref: EHDAA2:0004557
xref: EHDAA:2339
xref: EMAPA:16890
xref: EMAPA:18459
xref: RETIRED_EHDAA2:0001299
xref: VHOG:0000441
is_a: UBERON:0005669 ! peritoneal cavity mesothelium
relationship: part_of UBERON:0001341
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0001341 ! lesser sac
relationship: part_of UBERON:0001341 ! lesser sac
[Term]
id: UBERON:0003276
name: skeleton of embryo
def: "A skeletal system that is part of a embryo [Obol]." [OBOL:automatic]
synonym: "developmental tissue set of all bones" EXACT [OBOL:automatic]
synonym: "developmental tissue set of bones of body" EXACT [OBOL:automatic]
synonym: "developmental tissue skeletal system" EXACT [OBOL:automatic]
synonym: "developmental tissue skeleton" EXACT [OBOL:automatic]
synonym: "developmental tissue skeleton system" EXACT [OBOL:automatic]
synonym: "embryo set of all bones" EXACT [OBOL:automatic]
synonym: "embryo set of bones of body" EXACT [OBOL:automatic]
synonym: "embryo skeletal system" EXACT [OBOL:automatic]
synonym: "embryo skeleton" EXACT [OBOL:automatic]
synonym: "embryo skeleton system" EXACT [OBOL:automatic]
synonym: "set of all bones of developmental tissue" EXACT [OBOL:automatic]
synonym: "set of all bones of embryo" EXACT [OBOL:automatic]
synonym: "set of bones of body of developmental tissue" EXACT [OBOL:automatic]
synonym: "set of bones of body of embryo" EXACT [OBOL:automatic]
synonym: "skeletal system of developmental tissue" EXACT [OBOL:automatic]
synonym: "skeletal system of embryo" EXACT [OBOL:automatic]
synonym: "skeleton of developmental tissue" EXACT [OBOL:automatic]
synonym: "skeleton system of developmental tissue" EXACT [OBOL:automatic]
synonym: "skeleton system of embryo" EXACT [OBOL:automatic]
xref: EHDAA:5047
xref: EMAPA:17213
is_a: UBERON:0001434 ! skeletal system
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000922
intersection_of: UBERON:0001434 ! skeletal system
intersection_of: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003277
name: skeleton of upper jaw
def: "A subdivision of skeleton that is part of the upper jaw region[Obol]." [OBOL:automatic]
synonym: "upper jaw" BROAD [MA:0001908]
synonym: "upper jaw skeleton" EXACT []
xref: AAO:0000622
xref: EHDAA2:0002128
xref: EHDAA:8041
xref: EMAPA:17927
xref: FMA:54397
xref: FMA:59399
xref: MA:0001908
xref: VHOG:0000429
xref: XAO:0003087
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: subdivision_of UBERON:0001709
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0001709 ! upper jaw region
relationship: part_of UBERON:0001708 ! jaw skeleton
relationship: part_of UBERON:0001709 ! upper jaw region
relationship: subdivision_of UBERON:0001709 ! upper jaw region
[Term]
id: UBERON:0003278
name: skeleton of lower jaw
def: "A subdivision of skeleton that is part of a lower jaw [Obol]." [OBOL:automatic]
comment: in EHDAA2, this does not include the mandible; it includes the teeth and Meckel's cartilage
synonym: "lower jaw" BROAD [ZFA:0001273]
synonym: "lower jaw" BROAD [MA:0001906]
synonym: "lower jaw skeleton" EXACT [AAO:0000274]
synonym: "mandible" BROAD [ZFA:0001273]
synonym: "mandibular series" RELATED [ZFA:0001273]
xref: AAO:0000274
xref: EHDAA2:0004606
xref: EHDAA:8005
xref: EMAPA:17910
xref: FMA:54398
xref: MA:0001906
xref: TAO:0001273
xref: VHOG:0000428
xref: XAO:0003084
xref: ZFA:0001273
property_value: UBPROP:0000001 "The ventral portion of the first pharyngeal arch, comprising the lower jaw.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass anatomical cluster (CARO:0000041) CHANGED TO: develops_from anatomical cluster (UBERON:0000477)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass anatomical cluster (CARO:0000041) CHANGED TO: overlaps anatomical cluster (UBERON:0000477)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass anatomical cluster (CARO:0000041) CHANGED TO: part_of anatomical cluster (UBERON:0000477)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass anatomical cluster (CARO:0000041) CHANGED TO: subdivision_of anatomical cluster (UBERON:0000477)[TAO]" xsd:string
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: subdivision_of UBERON:0001710
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0001710 ! lower jaw region
relationship: overlaps UBERON:0008895 {source="VHOG-modified"} ! splanchnocranium
relationship: part_of UBERON:0001708 ! jaw skeleton
relationship: part_of UBERON:0001710 {source="EHDAA2"} ! lower jaw region
relationship: part_of UBERON:0011156 {source="EHDAA2"} ! facial skeleton
relationship: subdivision_of UBERON:0001710 ! lower jaw region
[Term]
id: UBERON:0003279
name: endothelium of trachea
synonym: "endothelium of windpipe" EXACT [OBOL:automatic]
synonym: "trachea endothelium" EXACT [OBOL:automatic]
synonym: "windpipe endothelium" EXACT [OBOL:automatic]
xref: EHDAA:3082
xref: RETIRED_EHDAA2:0002068
is_a: UBERON:0001901 ! epithelium of trachea
is_a: UBERON:0001986 ! endothelium
relationship: part_of UBERON:0003126
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0003126 ! trachea
relationship: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003280
name: endothelium of main bronchus
def: "An endothelium that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "bronchus principalis endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of bronchus principalis" EXACT [OBOL:automatic]
synonym: "endothelium of primary bronchus" EXACT [OBOL:automatic]
synonym: "endothelium of principal bronchus" EXACT [OBOL:automatic]
synonym: "main bronchus endothelium" EXACT [OBOL:automatic]
synonym: "primary bronchus endothelium" EXACT [OBOL:automatic]
synonym: "principal bronchus endothelium" EXACT [OBOL:automatic]
xref: EHDAA:3076
xref: RETIRED_EHDAA2:0001046
is_a: UBERON:0001986 ! endothelium
is_a: UBERON:0002340 ! epithelium of main bronchus
relationship: part_of UBERON:0002182
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0003281
name: mesentery of stomach
def: "The portion of the primitive mesentery that encloses the stomach; from its dorsal sheet, the greater omentum develops, and from its ventral sheet, the lesser omentum." [http://medical-dictionary.thefreedictionary.com/mesogastrium]
comment: todo - check primitive vs developed
synonym: "mesentery of ventriculus" EXACT [OBOL:automatic]
synonym: "mesogaster" EXACT [http://medical-dictionary.thefreedictionary.com/mesogastrium]
synonym: "mesogastium" EXACT [MA:0001617]
synonym: "mesogastrium" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html]
synonym: "stomach mesentery" EXACT [Obol:obol]
synonym: "ventriculus mesentery" EXACT [OBOL:automatic]
xref: EHDAA2:0001922
xref: EHDAA:2999
xref: EMAPA:17024
xref: EMAPA:18902
xref: MA:0001617
xref: SCTID:261623000
xref: VHOG:0000358
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004854 {source="MA"} ! gastrointestinal system mesentery
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0000945
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 {source="MA"} ! stomach
[Term]
id: UBERON:0003282
name: mesentery of heart
def: "A mesentery that is part of a heart [Obol]." [OBOL:automatic]
synonym: "heart mesentery" EXACT [OBOL:automatic]
xref: EHDAA:432
xref: EMAPA:16212
xref: RETIRED_EHDAA2:0000739
xref: VHOG:0000353
is_a: UBERON:0002095 ! mesentery
is_a: UBERON:0005983 ! heart layer
relationship: part_of UBERON:0000948
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0003283
name: mesentery of oesophagus
def: "A mesentery that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophagus mesentery" EXACT [OBOL:automatic]
synonym: "gullet mesentery" EXACT [OBOL:automatic]
synonym: "mesentery of esophagus" EXACT [OBOL:automatic]
synonym: "mesentery of gullet" EXACT [OBOL:automatic]
synonym: "oesophagus mesentery" EXACT [OBOL:automatic]
xref: EHDAA2:0001288
xref: EHDAA:2943
xref: EMAPA:16836
xref: EMAPA:18864
xref: MA:0001569
xref: VHOG:0000415
is_a: UBERON:0001975 ! serosa of esophagus
is_a: UBERON:0002095 ! mesentery
relationship: part_of UBERON:0001043
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0003284
name: mesentery of midgut
def: "A mesentery that is part of a midgut [Obol]." [OBOL:automatic]
synonym: "midgut mesentery" EXACT [OBOL:automatic]
xref: EHDAA2:0001202
xref: EHDAA:3031
xref: EMAPA:16721
xref: EMAPA:17039
xref: EMAPA:17045
xref: EMAPA:17197
xref: VHOG:0000413
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002095 ! mesentery
relationship: part_of UBERON:0001045
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001045 ! midgut
relationship: part_of UBERON:0001045 ! midgut
[Term]
id: UBERON:0003285
name: limb of embryo
def: "A limb that is part of a embryo [Obol]." [OBOL:automatic]
synonym: "developmental tissue limb" EXACT [OBOL:automatic]
synonym: "embryo limb" EXACT [OBOL:automatic]
synonym: "embryonic limb" EXACT [OBOL:automatic]
synonym: "limb of developmental tissue" EXACT [OBOL:automatic]
xref: EHDAA:1697
xref: EMAPA:16405
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002101 ! limb
relationship: part_of UBERON:0000922
intersection_of: UBERON:0002101 ! limb
intersection_of: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003286
name: duodenum of foregut
def: "A duodenum that is part of a foregut [Obol]." [OBOL:automatic]
synonym: "foregut duodenum" EXACT [OBOL:automatic]
xref: EHDAA2:0000560
xref: EHDAA:3830
xref: EMAPA:17178
is_a: UBERON:0002114 ! duodenum
relationship: part_of UBERON:0001041
intersection_of: UBERON:0002114 ! duodenum
intersection_of: part_of UBERON:0001041 ! foregut
relationship: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0003287
name: duodenum of midgut
def: "A duodenum that is part of a midgut [Obol]." [OBOL:automatic]
synonym: "midgut duodenum" EXACT [OBOL:automatic]
xref: EHDAA2:0001189
xref: EHDAA:3937
xref: EMAPA:17193
is_a: UBERON:0002114 ! duodenum
relationship: part_of UBERON:0001045
intersection_of: UBERON:0002114 ! duodenum
intersection_of: part_of UBERON:0001045 ! midgut
relationship: part_of UBERON:0001045 ! midgut
[Term]
id: UBERON:0003288
name: meninx of midbrain
def: "A meninx that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "meninges of midbrain" EXACT PLURAL [OBOL:automatic]
synonym: "midbrain meninges" EXACT PLURAL [OBOL:automatic]
synonym: "midbrain meninx" EXACT [OBOL:automatic]
xref: EHDAA2:0001174
xref: EHDAA:3708
xref: EMAPA:17791
xref: MA:0001058
xref: RETIRED_EHDAA2:0001109
xref: VHOG:0000012
is_a: UBERON:0003547 ! brain meninx
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003289
name: meninx of telencephalon
def: "A meninx that is part of a telencephalon [Obol]." [OBOL:automatic]
synonym: "meninges of telencephalon" EXACT PLURAL [OBOL:automatic]
synonym: "telencephalon meninges" EXACT PLURAL [OBOL:automatic]
synonym: "telencephalon meninx" EXACT [OBOL:automatic]
xref: EHDAA2:0001990
xref: EHDAA:5476
xref: EMAPA:17774
xref: MA:0000979
xref: VHOG:0000010
is_a: UBERON:0003548 ! forebrain meninges
relationship: part_of UBERON:0001893
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0003290
name: meninx of diencephalon
def: "A meninx that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "between brain meninges" EXACT [OBOL:automatic]
synonym: "between brain meninx" EXACT [OBOL:automatic]
synonym: "diencephalon meninges" EXACT [OBOL:automatic]
synonym: "diencephalon meninx" EXACT [OBOL:automatic]
synonym: "interbrain meninges" EXACT [OBOL:automatic]
synonym: "interbrain meninx" EXACT [OBOL:automatic]
synonym: "mature diencephalon meninges" EXACT [OBOL:automatic]
synonym: "mature diencephalon meninx" EXACT [OBOL:automatic]
synonym: "meninges of between brain" EXACT [OBOL:automatic]
synonym: "meninges of diencephalon" EXACT [OBOL:automatic]
synonym: "meninges of interbrain" EXACT [OBOL:automatic]
synonym: "meninges of mature diencephalon" EXACT [OBOL:automatic]
synonym: "meninx of between brain" EXACT [OBOL:automatic]
synonym: "meninx of interbrain" EXACT [OBOL:automatic]
synonym: "meninx of mature diencephalon" EXACT [OBOL:automatic]
xref: EHDAA2:0000399
xref: EHDAA:5458
xref: EMAPA:17764
xref: MA:0000826
xref: VHOG:0000009
is_a: UBERON:0003548 ! forebrain meninges
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003291
name: meninx of hindbrain
def: "A meninx that is part of a hindbrain [Obol]." [OBOL:automatic]
synonym: "hindbrain meninges" EXACT [OBOL:automatic]
synonym: "hindbrain meninx" EXACT [OBOL:automatic]
synonym: "meninges of hindbrain" EXACT [OBOL:automatic]
xref: EHDAA2:0000770
xref: EHDAA:3688
xref: EMAPA:17783
xref: MA:0000987
xref: VHOG:0000011
is_a: UBERON:0003547 ! brain meninx
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002028
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0002028 ! hindbrain
relationship: develops_from UBERON:0010091 {evidence="definitional"} ! future hindbrain meninges
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0003292
name: meninx of spinal cord
def: "A meninx that is part of a spinal cord [Obol]." [OBOL:automatic]
synonym: "menines of spinal cord" EXACT PLURAL []
synonym: "meninges of spinal cord" EXACT [OBOL:automatic]
synonym: "spinal cord meninges" EXACT [OBOL:automatic]
synonym: "spinal cord meninx" EXACT [OBOL:automatic]
synonym: "spinal meninges" EXACT PLURAL []
synonym: "spinal meninx" EXACT []
xref: EHDAA2:0001895
xref: EHDAA:2865
xref: EMAPA:17804
xref: MA:0001130
xref: ncithesaurus:Spinal_Meninges
xref: SCTID:181097002
xref: VHOG:0000443
is_a: UBERON:0002360 ! meninx
is_a: UBERON:0005174 ! back organ
relationship: part_of UBERON:0002240
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003293
name: gland of oral region
def: "A gland that is part of a oral opening [Obol]." [OBOL:automatic]
synonym: "gland of oral opening" EXACT [OBOL:automatic]
synonym: "gland of oral part of face" EXACT [OBOL:automatic]
synonym: "gland of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "oral opening gland" EXACT [OBOL:automatic]
synonym: "oral part of face gland" EXACT [OBOL:automatic]
synonym: "oral region gland" EXACT [OBOL:automatic]
synonym: "subdivision of mouth gland" EXACT [OBOL:automatic]
xref: EHDAA2:0001327
xref: EHDAA:2181
xref: EMAPA:16572
xref: EMAPA:16723
xref: VHOG:0000652
is_a: UBERON:0010047 ! oral gland
relationship: part_of UBERON:0000166
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000166 ! oral opening
relationship: part_of UBERON:0000166 ! oral opening
[Term]
id: UBERON:0003294
name: gland of foregut
def: "A gland that is part of a foregut [Obol]." [OBOL:automatic]
synonym: "foregut gland" EXACT [OBOL:automatic]
xref: EHDAA2:0000567
xref: EHDAA:950
xref: EMAPA:16557
xref: VHOG:0000650
is_a: UBERON:0003408 ! gland of gut
relationship: part_of UBERON:0001041
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001041 ! foregut
relationship: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0003295
name: pharyngeal gland
def: "Racemose mucous glands beneath the mucous membrane of the pharynx." [Biology-Online_Dictionary:http://www.biology-online.org/dictionary/]
subset: organ_slim
synonym: "glandulae pharyngeae" RELATED [BTO:0004849]
synonym: "pharynx gland" EXACT [EHDAA2:0001461]
xref: BTO:0004849
xref: EHDAA2:0001461
xref: EHDAA:2967
xref: FMA:55075
is_a: UBERON:0003408 ! gland of gut
relationship: part_of UBERON:0001042
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001042 {source="BTO"} ! chordate pharynx
[Term]
id: UBERON:0003296
name: gland of diencephalon
def: "A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "between brain gland" EXACT [OBOL:automatic]
synonym: "diencephalon gland" EXACT [OBOL:automatic]
synonym: "gland of between brain" EXACT [OBOL:automatic]
synonym: "gland of interbrain" EXACT [OBOL:automatic]
synonym: "gland of mature diencephalon" EXACT [OBOL:automatic]
synonym: "interbrain gland" EXACT [OBOL:automatic]
synonym: "mature diencephalon gland" EXACT [OBOL:automatic]
xref: EHDAA2:0000395
xref: EHDAA:4475
xref: EMAPA:16646
xref: EMAPA:16897
xref: VHOG:0000653
is_a: UBERON:0002530 ! gland
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003297
name: gland of integumental system
def: "A gland that is part of a integumental system [Obol]." [OBOL:automatic]
synonym: "integumental system gland" EXACT [OBOL:automatic]
xref: EHDAA2:0000837
xref: EHDAA:6522
xref: EMAPA:17758
xref: MA:0000144
xref: VHOG:0000654
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0002416
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0002416 ! integumental system
relationship: part_of UBERON:0002416 ! integumental system
[Term]
id: UBERON:0003298
name: roof plate of neural tube
def: "A roof plate that is part of a neural tube [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "neural tube roof plate" EXACT [OBOL:automatic]
synonym: "neural tube roofplate" EXACT [OBOL:automatic]
synonym: "roof plate neural tube region" EXACT [ZFA:0001436]
synonym: "roofplate of neural tube" EXACT [OBOL:automatic]
xref: EHDAA2:0001270
xref: EHDAA:2891
xref: EHDAA:916
xref: EMAPA:16168
xref: EMAPA:16535
xref: TAO:0001436
xref: VHOG:0000303
xref: ZFA:0001436
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0001049
relationship: part_of UBERON:0003054
intersection_of: UBERON:0000479 ! tissue
intersection_of: part_of UBERON:0001049 ! neural tube
intersection_of: part_of UBERON:0003054 ! roof plate
relationship: part_of UBERON:0001049 ! neural tube
relationship: part_of UBERON:0003054 ! roof plate
[Term]
id: UBERON:0003299
name: roof plate of midbrain
def: "A roof plate that is part of a midbrain [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "midbrain roof plate" EXACT [OBOL:automatic]
synonym: "midbrain roofplate" EXACT [OBOL:automatic]
synonym: "roof plate midbrain region" EXACT [ZFA:0000355]
synonym: "roofplate of midbrain" EXACT [OBOL:automatic]
xref: EHDAA2:0001177
xref: EHDAA:3712
xref: EMAPA:16981
xref: RETIRED_EHDAA2:0001111
xref: TAO:0000355
xref: VHOG:0000772
xref: ZFA:0000355
is_a: UBERON:0003298 ! roof plate of neural tube
relationship: part_of UBERON:0001891
relationship: part_of UBERON:0003054
intersection_of: UBERON:0000479 ! tissue
intersection_of: part_of UBERON:0001891 ! midbrain
intersection_of: part_of UBERON:0003054 ! roof plate
relationship: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0003054 ! roof plate
[Term]
id: UBERON:0003300
name: roof plate of telencephalon
def: "A roof plate that is part of a telencephalon [Obol]." [OBOL:automatic]
synonym: "roofplate of telencephalon" EXACT [OBOL:automatic]
synonym: "telencephalon roof plate" EXACT [OBOL:automatic]
synonym: "telencephalon roofplate" EXACT [OBOL:automatic]
xref: EHDAA2:0001994
xref: EHDAA:3512
xref: EMAPA:16657
xref: VHOG:0000774
is_a: UBERON:0003298 ! roof plate of neural tube
relationship: part_of UBERON:0001893
relationship: part_of UBERON:0003054
intersection_of: UBERON:0000479 ! tissue
intersection_of: part_of UBERON:0001893 ! telencephalon
intersection_of: part_of UBERON:0003054 ! roof plate
relationship: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0003054 ! roof plate
[Term]
id: UBERON:0003301
name: roof plate of diencephalon
def: "A roof plate that is part of a diencephalon [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "between brain roof plate" EXACT [OBOL:automatic]
synonym: "between brain roofplate" EXACT [OBOL:automatic]
synonym: "diencephalon roof plate" EXACT [OBOL:automatic]
synonym: "diencephalon roofplate" EXACT [OBOL:automatic]
synonym: "interbrain roof plate" EXACT [OBOL:automatic]
synonym: "interbrain roofplate" EXACT [OBOL:automatic]
synonym: "mature diencephalon roof plate" EXACT [OBOL:automatic]
synonym: "mature diencephalon roofplate" EXACT [OBOL:automatic]
synonym: "roof plate diencephalic region" EXACT [ZFA:0001358]
synonym: "roof plate of between brain" EXACT [OBOL:automatic]
synonym: "roof plate of interbrain" EXACT [OBOL:automatic]
synonym: "roof plate of mature diencephalon" EXACT [OBOL:automatic]
synonym: "roofplate of between brain" EXACT [OBOL:automatic]
synonym: "roofplate of diencephalon" EXACT [OBOL:automatic]
synonym: "roofplate of interbrain" EXACT [OBOL:automatic]
synonym: "roofplate of mature diencephalon" EXACT [OBOL:automatic]
xref: EHDAA2:0000402
xref: EHDAA:1979
xref: EHDAA:2657
xref: EHDAA:3494
xref: EMAPA:16651
xref: EMAPA:16909
xref: TAO:0001358
xref: VHOG:0000771
xref: ZFA:0001358
is_a: UBERON:0003298 ! roof plate of neural tube
relationship: part_of UBERON:0001894
relationship: part_of UBERON:0003054
intersection_of: UBERON:0000479 ! tissue
intersection_of: part_of UBERON:0001894 ! diencephalon
intersection_of: part_of UBERON:0003054 ! roof plate
relationship: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0003054 ! roof plate
[Term]
id: UBERON:0003302
name: roof plate of metencephalon
def: "A roof plate that is part of a metencephalon [Obol]." [OBOL:automatic]
synonym: "epencephalon-2 roof plate" EXACT [OBOL:automatic]
synonym: "epencephalon-2 roofplate" EXACT [OBOL:automatic]
synonym: "metencephalon roof plate" EXACT [OBOL:automatic]
synonym: "metencephalon roofplate" EXACT [OBOL:automatic]
synonym: "roof plate of epencephalon-2" EXACT [OBOL:automatic]
synonym: "roofplate of epencephalon-2" EXACT [OBOL:automatic]
synonym: "roofplate of metencephalon" EXACT [OBOL:automatic]
xref: EHDAA2:0001160
xref: EHDAA:5524
xref: EMAPA:17098
xref: EMAPA:17105
xref: VHOG:0000770
is_a: UBERON:0003298 ! roof plate of neural tube
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001895
relationship: part_of UBERON:0003054
intersection_of: UBERON:0000479 ! tissue
intersection_of: part_of UBERON:0001895 ! metencephalon
intersection_of: part_of UBERON:0003054 ! roof plate
relationship: part_of UBERON:0001895 ! metencephalon
relationship: part_of UBERON:0003054 ! roof plate
[Term]
id: UBERON:0003303
name: roof plate of medulla oblongata
def: "A roof plate that is part of a medulla oblongata [Obol]." [OBOL:automatic]
synonym: "bulb roof plate" EXACT [OBOL:automatic]
synonym: "bulb roofplate" EXACT [OBOL:automatic]
synonym: "medulla oblongata roof plate" EXACT [OBOL:automatic]
synonym: "medulla oblongata roofplate" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata roof plate" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata roofplate" EXACT [OBOL:automatic]
synonym: "metepencephalon roof plate" EXACT [OBOL:automatic]
synonym: "metepencephalon roofplate" EXACT [OBOL:automatic]
synonym: "roof plate of bulb" EXACT [OBOL:automatic]
synonym: "roof plate of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "roof plate of metepencephalon" EXACT [OBOL:automatic]
synonym: "roofplate of bulb" EXACT [OBOL:automatic]
synonym: "roofplate of medulla oblongata" EXACT [OBOL:automatic]
synonym: "roofplate of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "roofplate of metepencephalon" EXACT [OBOL:automatic]
xref: EHDAA2:0001099
xref: EHDAA:7614
xref: VHOG:0000776
is_a: UBERON:0003298 ! roof plate of neural tube
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896
relationship: part_of UBERON:0003054
intersection_of: UBERON:0000479 ! tissue
intersection_of: part_of UBERON:0001896 ! medulla oblongata
intersection_of: part_of UBERON:0003054 ! roof plate
relationship: part_of UBERON:0001896 ! medulla oblongata
relationship: part_of UBERON:0003054 ! roof plate
[Term]
id: UBERON:0003304
name: blood island of mesoderm
def: "A blood island that is part of a mesoderm [Obol]." [OBOL:automatic]
synonym: "mesoderm blood island" EXACT [OBOL:automatic]
xref: EHDAA2:0003241
xref: EHDAA:170
xref: EMAPA:16115
is_a: UBERON:0003061 ! blood island
relationship: part_of UBERON:0000926
intersection_of: UBERON:0003061 ! blood island
intersection_of: part_of UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003305
name: blood island of mesenchyme
def: "A blood island that is part of a mesenchyme [Obol]." [OBOL:automatic]
synonym: "mesenchyme blood island" EXACT [OBOL:automatic]
xref: EHDAA:207
xref: EMAPA:16268
is_a: UBERON:0003061 ! blood island
relationship: part_of UBERON:0003104
intersection_of: UBERON:0003061 ! blood island
intersection_of: part_of UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0003306
name: floor plate of neural tube
def: "A floor plate that is part of a neural tube [Obol]." [OBOL:automatic]
comment: Note that although 'floor plate' is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. We introduce this class for the neural tube specific structure
subset: vertebrate_core
synonym: "floor plate neural tube" EXACT [ZFA:0001434]
synonym: "floorplate of neural tube" EXACT [OBOL:automatic]
synonym: "neural tube floor plate" EXACT [OBOL:automatic]
synonym: "neural tube floorplate" EXACT [OBOL:automatic]
xref: EFO:0003688
xref: EHDAA2:0001256
xref: EHDAA:2871
xref: EHDAA:910
xref: EMAPA:16165
xref: EMAPA:16531
xref: TAO:0001434
xref: VHOG:0000300
xref: ZFA:0001434
is_a: UBERON:0000073 ! regional part of nervous system
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001049
relationship: part_of UBERON:0003079
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001049 ! neural tube
intersection_of: part_of UBERON:0003079 ! floor plate
relationship: part_of UBERON:0001049 ! neural tube
relationship: part_of UBERON:0003079 ! floor plate
[Term]
id: UBERON:0003307
name: floor plate of midbrain
def: "A floor plate that is part of a midbrain [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "floor plate midbrain region" EXACT [ZFA:0001677]
synonym: "floorplate of midbrain" EXACT [OBOL:automatic]
synonym: "midbrain floor plate" EXACT [OBOL:automatic]
synonym: "midbrain floorplate" EXACT [OBOL:automatic]
xref: EHDAA2:0001164
xref: EHDAA:3698
xref: EMAPA:16975
xref: RETIRED_EHDAA2:0001106
xref: TAO:0002196
xref: VHOG:0000780
xref: ZFA:0001677
property_value: UBPROP:0000001 "Floor plate that is part of the midbrain.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass multi-tissue structure (CARO:0000055) CHANGED TO: develops_from multi-tissue structure (UBERON:0000481)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass multi-tissue structure (CARO:0000055) CHANGED TO: part_of multi-tissue structure (UBERON:0000481)[TAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002950 ! regional part of midbrain
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001891
relationship: part_of UBERON:0003079
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001891 ! midbrain
intersection_of: part_of UBERON:0003079 ! floor plate
relationship: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0003079 ! floor plate
[Term]
id: UBERON:0003308
name: floor plate of telencephalon
def: "A floor plate that is part of a telencephalon [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "floor plate telencephalic region" EXACT [ZFA:0000914]
synonym: "floorplate of telencephalon" EXACT [OBOL:automatic]
synonym: "floorplate telencephalon" EXACT [ZFA:0000914]
synonym: "telencephalon floor plate" EXACT [OBOL:automatic]
synonym: "telencephalon floorplate" EXACT [OBOL:automatic]
xref: EHDAA2:0001983
xref: EHDAA:3498
xref: EMAPA:16655
xref: TAO:0000914
xref: VHOG:0000783
xref: ZFA:0000914
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002791 ! regional part of telencephalon
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001893
relationship: part_of UBERON:0003079
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001893 ! telencephalon
intersection_of: part_of UBERON:0003079 ! floor plate
relationship: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0003079 ! floor plate
[Term]
id: UBERON:0003309
name: floor plate of diencephalon
def: "A floor plate that is part of a diencephalon [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "between brain floor plate" EXACT [OBOL:automatic]
synonym: "between brain floorplate" EXACT [OBOL:automatic]
synonym: "diencephalon floor plate" EXACT [OBOL:automatic]
synonym: "diencephalon floorplate" EXACT [OBOL:automatic]
synonym: "floor plate diencephalic region" EXACT [ZFA:0000871]
synonym: "floor plate of between brain" EXACT [OBOL:automatic]
synonym: "floor plate of interbrain" EXACT [OBOL:automatic]
synonym: "floor plate of mature diencephalon" EXACT [OBOL:automatic]
synonym: "floorplate diencephalon" EXACT [ZFA:0000871]
synonym: "floorplate of between brain" EXACT [OBOL:automatic]
synonym: "floorplate of diencephalon" EXACT [OBOL:automatic]
synonym: "floorplate of interbrain" EXACT [OBOL:automatic]
synonym: "floorplate of mature diencephalon" EXACT [OBOL:automatic]
synonym: "interbrain floor plate" EXACT [OBOL:automatic]
synonym: "interbrain floorplate" EXACT [OBOL:automatic]
synonym: "mature diencephalon floor plate" EXACT [OBOL:automatic]
synonym: "mature diencephalon floorplate" EXACT [OBOL:automatic]
xref: EHDAA2:0000388
xref: EHDAA:1975
xref: EHDAA:2651
xref: EHDAA:3480
xref: EMAPA:16645
xref: EMAPA:16903
xref: TAO:0000871
xref: VHOG:0000782
xref: ZFA:0000871
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002784 ! regional part of diencephalon
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001894
relationship: part_of UBERON:0003079
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001894 ! diencephalon
intersection_of: part_of UBERON:0003079 ! floor plate
relationship: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0003079 ! floor plate
[Term]
id: UBERON:0003310
name: floor plate of metencephalon
def: "A floor plate that is part of a metencephalon [Obol]." [OBOL:automatic]
synonym: "epencephalon-2 floor plate" EXACT [OBOL:automatic]
synonym: "epencephalon-2 floorplate" EXACT [OBOL:automatic]
synonym: "floor plate of epencephalon-2" EXACT [OBOL:automatic]
synonym: "floorplate of epencephalon-2" EXACT [OBOL:automatic]
synonym: "floorplate of metencephalon" EXACT [OBOL:automatic]
synonym: "metencephalon floor plate" EXACT [OBOL:automatic]
synonym: "metencephalon floorplate" EXACT [OBOL:automatic]
xref: EHDAA2:0001158
xref: EHDAA:5500
xref: EMAPA:17093
xref: EMAPA:17100
xref: EMAPA:17258
xref: VHOG:0000784
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001895
relationship: part_of UBERON:0003079
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001895 ! metencephalon
intersection_of: part_of UBERON:0003079 ! floor plate
relationship: part_of UBERON:0001895 ! metencephalon
relationship: part_of UBERON:0003079 ! floor plate
[Term]
id: UBERON:0003311
name: floor plate of medulla oblongata
def: "A floor plate that is part of a medulla oblongata [Obol]." [OBOL:automatic]
synonym: "bulb floor plate" EXACT [OBOL:automatic]
synonym: "bulb floorplate" EXACT [OBOL:automatic]
synonym: "floor plate of bulb" EXACT [OBOL:automatic]
synonym: "floor plate of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "floor plate of metepencephalon" EXACT [OBOL:automatic]
synonym: "floorplate of bulb" EXACT [OBOL:automatic]
synonym: "floorplate of medulla oblongata" EXACT [OBOL:automatic]
synonym: "floorplate of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "floorplate of metepencephalon" EXACT [OBOL:automatic]
synonym: "medulla oblongata floor plate" EXACT [OBOL:automatic]
synonym: "medulla oblongata floorplate" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata floor plate" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata floorplate" EXACT [OBOL:automatic]
synonym: "metepencephalon floor plate" EXACT [OBOL:automatic]
synonym: "metepencephalon floorplate" EXACT [OBOL:automatic]
xref: EHDAA2:0001097
xref: EHDAA:7590
xref: EMAPA:17551
xref: VHOG:0000786
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002678 ! regional part of medulla oblongata
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001896
relationship: part_of UBERON:0003079
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001896 ! medulla oblongata
intersection_of: part_of UBERON:0003079 ! floor plate
relationship: part_of UBERON:0001896 ! medulla oblongata
relationship: part_of UBERON:0003079 ! floor plate
[Term]
id: UBERON:0003312
name: mesenchyme of testis
def: "A mesenchyme that is part of a testis [Obol]." [OBOL:automatic]
synonym: "testis mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0002010
xref: EHDAA:8150
xref: VHOG:0001442
is_a: UBERON:0003855 ! gonad mesenchyme
relationship: part_of UBERON:0000473
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000473 ! testis
relationship: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0003314
name: eye mesenchyme
comment: todo - change mesenchyme relationships to precursor_of
synonym: "mesenchyme of eye" EXACT [OBOL:automatic]
xref: EHDAA2:0000485
xref: EHDAA:2910
xref: EMAPA:16324
xref: EMAPA:16673
xref: EMAPA:17833
xref: EMAPA:17836
xref: VHOG:0001084
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
is_a: UBERON:0009891 ! facial mesenchyme
relationship: part_of UBERON:0000019
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000019 ! camera-type eye
relationship: develops_from UBERON:0009920 {source="EHDAA2"} ! optic neural crest
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0003315
name: mesenchyme of ovary
def: "A mesenchyme that is part of a ovary [Obol]." [OBOL:automatic]
synonym: "female reproductive system gonad mesenchyme" EXACT [OBOL:automatic]
synonym: "female reproductive system gonada mesenchyme" EXACT [OBOL:automatic]
synonym: "gonad of female reproductive system mesenchyme" EXACT [OBOL:automatic]
synonym: "gonada of female reproductive system mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of female reproductive system gonad" EXACT [OBOL:automatic]
synonym: "mesenchyme of female reproductive system gonada" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonad of female reproductive system" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonada of female reproductive system" EXACT [OBOL:automatic]
synonym: "ovary mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0001362
xref: EHDAA:8128
xref: VHOG:0001441
is_a: UBERON:0003855 ! gonad mesenchyme
relationship: part_of UBERON:0000992
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000992 ! female gonad
relationship: part_of UBERON:0000992 ! female gonad
[Term]
id: UBERON:0003316
name: mesenchyme of yolk sac
def: "A mesenchyme that is part of a yolk sac [Obol]." [OBOL:automatic]
synonym: "yolk sac mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0002216
xref: EHDAA:205
xref: EMAPA:16267
xref: VHOG:0000503
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0010333 ! extraembryonic membrane mesenchyme
relationship: part_of UBERON:0001040
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001040 ! yolk sac
relationship: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0003317
name: odontogenic papilla of incisor
def: "A odontogenic papilla that is part of a incisor tooth [Obol]." [OBOL:automatic]
synonym: "incisor dental papilla" EXACT [UBERON:cjm]
synonym: "incisor mesenchyme" EXACT [UBERON:cjm]
synonym: "incisor odontogenic papilla" EXACT [OBOL:automatic]
synonym: "incisor tooth odontogenic papilla" EXACT [OBOL:automatic]
synonym: "odontogenic papilla of incisor tooth" EXACT [OBOL:automatic]
is_a: UBERON:0001763 ! odontogenic papilla
is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest
relationship: part_of UBERON:0001098
intersection_of: UBERON:0001763 ! odontogenic papilla
intersection_of: part_of UBERON:0001098 ! incisor tooth
relationship: develops_from UBERON:0010259 {source="EHDAA2-abduced"} ! 1st arch mesenchyme from neural crest
relationship: part_of UBERON:0001098 ! incisor tooth
[Term]
id: UBERON:0003318
name: mesenchyme of elbow
def: "A mesenchyme that is part of a elbow [Obol]." [OBOL:automatic]
synonym: "cubital region mesenchyme" EXACT [OBOL:automatic]
synonym: "elbow mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of cubital region" EXACT [OBOL:automatic]
xref: EHDAA2:0000432
xref: EHDAA:4170
xref: EHDAA:6216
xref: EMAPA:17416
xref: VHOG:0001075
is_a: UBERON:0003859 ! forelimb mesenchyme
relationship: part_of UBERON:0001461
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001461 ! elbow
relationship: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0003319
name: mesenchyme of carpal region
def: "Mesenchyme of the carpal region that conributes to the carpal skeleton." [UBERON:cjm]
synonym: "carpal region mesenchyme" EXACT [OBOL:automatic]
synonym: "carpus mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of wrist" EXACT [OBOL:automatic]
synonym: "wrist mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0000220
xref: EHDAA:5200
xref: EMAPA:18485
is_a: UBERON:0003859 ! forelimb mesenchyme
relationship: part_of UBERON:0004452
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0004452 ! carpal region
relationship: part_of UBERON:0004452 ! carpal region
[Term]
id: UBERON:0003320
name: mesenchyme of hip
def: "A mesenchyme that is part of a hip [Obol]." [OBOL:automatic]
synonym: "hip mesenchyme" EXACT [OBOL:automatic]
synonym: "hip region mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of hip region" EXACT [OBOL:automatic]
synonym: "mesenchyme of regio coxae" EXACT [OBOL:automatic]
synonym: "regio coxae mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0000786
xref: EHDAA:5157
xref: EHDAA:6182
xref: EMAPA:17492
xref: VHOG:0001029
is_a: UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0001464
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0003321
name: mesenchyme of knee
def: "A mesenchyme that is part of a knee [Obol]." [OBOL:automatic]
synonym: "knee mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0000898
xref: EHDAA:5163
xref: EHDAA:6188
xref: EMAPA:17495
xref: VHOG:0001070
is_a: UBERON:0003860 ! hindlimb mesenchyme
relationship: part_of UBERON:0001465
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001465 ! knee
relationship: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0003322
name: mesenchyme of shoulder
def: "A mesenchyme that is part of a shoulder [Obol]." [OBOL:automatic]
synonym: "shoulder mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0001837
xref: EHDAA:4184
xref: EHDAA:6232
xref: EMAPA:17423
xref: VHOG:0001035
is_a: UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0001467
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003323
name: mesenchyme of upper jaw
def: "A mesenchyme that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "mesenchyme of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch mesenchyme" EXACT [OBOL:automatic]
synonym: "upper jaw mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0002124
xref: EHDAA:8031
xref: EMAPA:17929
xref: VHOG:0001099
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0009891 ! facial mesenchyme
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001709
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001709 ! upper jaw region
relationship: develops_from UBERON:0009526 {source="EHDAA2"} ! maxillary process mesenchyme
relationship: part_of UBERON:0001709 ! upper jaw region
[Term]
id: UBERON:0003324
name: mesenchyme of lower jaw
def: "A mesenchyme that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "lower jaw mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0001024
xref: EHDAA:8003
xref: EMAPA:17916
xref: VHOG:0001069
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001710
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001710 ! lower jaw region
relationship: develops_from UBERON:0006905 {source="EHDAA2"} ! mandibular process mesenchyme
relationship: part_of UBERON:0001710 ! lower jaw region
[Term]
id: UBERON:0003325
name: mesenchyme of pinna
def: "A mesenchyme that is part of a pinna [Obol]." [OBOL:automatic]
synonym: "auricle mesenchyme" EXACT [OBOL:automatic]
synonym: "auricle of ear mesenchyme" EXACT [OBOL:automatic]
synonym: "auricle of external ear mesenchyme" EXACT [OBOL:automatic]
synonym: "auricula (auris externa) mesenchyme" EXACT [OBOL:automatic]
synonym: "auricula mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricle" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricle of ear" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricle of external ear" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricula" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricula (auris externa)" EXACT [OBOL:automatic]
synonym: "mesenchyme of pinna of ear" EXACT [OBOL:automatic]
synonym: "pinna mesenchyme" EXACT [OBOL:automatic]
synonym: "pinna of ear mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0001469
xref: EHDAA:8981
xref: EMAPA:17591
xref: VHOG:0000747
is_a: UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0001757
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001757 ! pinna
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0003326
name: mesenchyme of mammary gland
synonym: "lactiferous gland mesenchyme" EXACT [OBOL:automatic]
synonym: "lobe of breast mesenchyme" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland mesenchyme" EXACT [OBOL:automatic]
synonym: "mammary gland mesenchyme" EXACT [OBOL:automatic]
synonym: "mammary mesenchyme" EXACT []
synonym: "mesenchyme of lactiferous gland" EXACT [OBOL:automatic]
synonym: "mesenchyme of lobe of breast" EXACT [OBOL:automatic]
synonym: "mesenchyme of lobe of mammary gland" EXACT [OBOL:automatic]
xref: EHDAA2:0001058
xref: EHDAA:6528
xref: EMAPA:17761
xref: VHOG:0001087
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001911
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001911 ! mammary gland
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0003327
name: mesenchyme of forearm
def: "A mesenchyme that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region mesenchyme" EXACT [OBOL:automatic]
synonym: "arm middle limb segment mesenchyme" EXACT [OBOL:automatic]
synonym: "arm zeugopod mesenchyme" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment mesenchyme" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod mesenchyme" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb mesenchyme" EXACT [OBOL:automatic]
synonym: "lower arm mesenchyme" EXACT [OBOL:automatic]
synonym: "lower segment of arm mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of antebrachial region" EXACT [OBOL:automatic]
synonym: "mesenchyme of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "mesenchyme of arm zeugopod" EXACT [OBOL:automatic]
synonym: "mesenchyme of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "mesenchyme of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "mesenchyme of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower arm" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower segment of arm" EXACT [OBOL:automatic]
synonym: "mesenchyme of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "mesenchyme of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "mesenchyme of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "mesenchyme of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "mesenchyme of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "mesenchyme of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "mesenchyme of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm mesenchyme" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region mesenchyme" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb mesenchyme" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment mesenchyme" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod mesenchyme" EXACT [OBOL:automatic]
synonym: "zeugopod of arm mesenchyme" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region mesenchyme" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0000555
xref: EHDAA:4176
xref: EHDAA:6222
xref: EMAPA:17419
xref: VHOG:0000504
is_a: UBERON:0003859 ! forelimb mesenchyme
relationship: part_of UBERON:0002386
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0002386 {source="EMAPA"} ! forelimb zeugopod
[Term]
id: UBERON:0003328
name: mesenchyme of footplate
alt_id: UBERON:0005260
synonym: "foot plate mesenchyme" EXACT []
xref: EHDAA2:0000549
xref: EHDAA:5149
xref: EHDAA:6172
xref: EMAPA:17252
xref: VHOG_RETIRED:0001055
is_a: UBERON:0010377 ! mesenchyme from somatopleure
relationship: part_of UBERON:0006871
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0006871 ! footplate
relationship: develops_from UBERON:0003412 {source="EHDAA2"} ! hindlimb/pelvic fin bud mesenchyme
relationship: part_of UBERON:0006871 ! footplate
[Term]
id: UBERON:0003329
name: submucosa of anal canal
def: "A submucosa that is part of an anal canal [Obol]." [OBOL:automatic]
synonym: "anal canal submucosa" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically submucosa" EXACT [OBOL:automatic]
synonym: "anal region submucosa" EXACT [OBOL:automatic]
synonym: "anatomical anal canal submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "submucosa of anal region" EXACT [OBOL:automatic]
synonym: "submucosa of anatomical anal canal" EXACT [OBOL:automatic]
xref: EMAPA:27535
xref: FMA:85399
xref: SCTID:7892006
is_a: UBERON:0001208 ! submucosa of large intestine
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000159
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0000159 ! anal canal
relationship: part_of UBERON:0000159 ! anal canal
[Term]
id: UBERON:0003330
name: submucosa of rectum
def: " The submucous layer of the wall of the rectum." [BTO:0002114]
synonym: "rectal submucosa" EXACT [FMA:15034]
synonym: "rectum submucosa" EXACT [OBOL:automatic]
synonym: "tela submucosa recti" EXACT LATIN [BTO:0002114]
xref: BTO:0002114
xref: EMAPA:27083
xref: EMAPA:27323
xref: FMA:15034
xref: SCTID:71683001
is_a: UBERON:0001208 ! submucosa of large intestine
relationship: part_of UBERON:0001052
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001052 ! rectum
relationship: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003331
name: submucosa of colon
def: "A submucosa that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon submucosa" EXACT [OBOL:automatic]
synonym: "colonic submucosa" EXACT [FMA:14985]
synonym: "large bowel submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of large bowel" EXACT [OBOL:automatic]
xref: EMAPA:27379
xref: FMA:14985
xref: SCTID:61647009
is_a: UBERON:0001208 ! submucosa of large intestine
relationship: part_of UBERON:0001155
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001155 ! colon
relationship: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0003332
name: submucosa of duodenum
def: "A submucosa that is part of a duodenum [Obol]." [OBOL:automatic]
synonym: "doudenal submucosa" EXACT [FMA:14943]
synonym: "duodenal submucosa" EXACT [FMA:14943]
synonym: "duodenum submucosa" EXACT [OBOL:automatic]
xref: EMAPA:27239
xref: FMA:14943
xref: SCTID:76519004
is_a: UBERON:0001205 ! submucosa of small intestine
relationship: part_of UBERON:0002114
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002114 ! duodenum
relationship: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0003333
name: submucosa of jejunum
def: "A submucosa that is part of a jejunum [Obol]." [OBOL:automatic]
synonym: "jejunal submucosa" EXACT [FMA:14950]
synonym: "jejunum submucosa" EXACT [OBOL:automatic]
xref: EMAPA:27111
xref: EMAPA:27351
xref: FMA:14950
xref: SCTID:70192009
is_a: UBERON:0001205 ! submucosa of small intestine
relationship: part_of UBERON:0002115
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002115 ! jejunum
relationship: part_of UBERON:0002115 ! jejunum
[Term]
id: UBERON:0003334
name: serosa of rectum
def: "A serous membrane that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "rectal serosa" EXACT [FMA:15039]
synonym: "rectum serosa" EXACT [OBOL:automatic]
synonym: "rectum serous membrane" EXACT [OBOL:automatic]
synonym: "serous membrane of rectum" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of rectum" EXACT [FMA:15039]
xref: EMAPA:27087
xref: EMAPA:27331
xref: FMA:15039
is_a: UBERON:0001209 ! serosa of large intestine
relationship: part_of UBERON:0001052
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001052 ! rectum
relationship: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003335
name: serosa of colon
def: "A serous membrane that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon serosa" EXACT [OBOL:automatic]
synonym: "colon serous membrane" EXACT [OBOL:automatic]
synonym: "colonic serosa" EXACT [FMA:14990]
synonym: "large bowel serosa" EXACT [OBOL:automatic]
synonym: "large bowel serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of large bowel" EXACT [OBOL:automatic]
synonym: "serous membrane of colon" EXACT [OBOL:automatic]
synonym: "serous membrane of large bowel" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of colon" EXACT [FMA:14990]
xref: EMAPA:27387
xref: FMA:14990
xref: SCTID:90132000
is_a: UBERON:0001209 ! serosa of large intestine
relationship: part_of UBERON:0001155
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001155 ! colon
relationship: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0003336
name: serosa of duodenum
def: "A serous membrane that is part of a duodenum [Obol]." [OBOL:automatic]
synonym: "doudenal serosa" EXACT [FMA:14948]
synonym: "duodenal serosa" EXACT [FMA:14948]
synonym: "duodenum serosa" EXACT [OBOL:automatic]
synonym: "duodenum serous membrane" EXACT [OBOL:automatic]
synonym: "serous membrane of duodenum" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of duodenum" EXACT [FMA:14948]
xref: EMAPA:27247
xref: FMA:14948
xref: SCTID:1236009
is_a: UBERON:0001206 ! serosa of small intestine
relationship: part_of UBERON:0002114
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0002114 ! duodenum
relationship: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0003337
name: serosa of jejunum
def: "A serous membrane that is part of a jejunum [Obol]." [OBOL:automatic]
synonym: "jejunal serosa" EXACT [FMA:14955]
synonym: "jejunum serosa" EXACT [OBOL:automatic]
synonym: "jejunum serous membrane" EXACT [OBOL:automatic]
synonym: "serous membrane of jejunum" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of jejunum" EXACT [FMA:14955]
xref: EMAPA:27115
xref: EMAPA:27359
xref: FMA:14955
is_a: UBERON:0001206 ! serosa of small intestine
relationship: part_of UBERON:0002115
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0002115 ! jejunum
relationship: part_of UBERON:0002115 ! jejunum
[Term]
id: UBERON:0003338
name: ganglion of peripheral nervous system
def: "A ganglion that is part of a peripheral nervous system [Obol]." [OBOL:automatic]
synonym: "peripheral nervous system ganglion" EXACT [OBOL:automatic]
xref: BTO:0001123
xref: EMAPA:18371
xref: EV:0100372
xref: MA:0001161
is_a: UBERON:0000045 ! ganglion
relationship: part_of UBERON:0000010
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0000010 ! peripheral nervous system
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0003339
name: ganglion of central nervous system
def: "A ganglion that is part of a central nervous system [Obol]." [OBOL:automatic]
comment: this has no subclasses in FMA. In EHDAA2 it has only the cranial ganglia
synonym: "central nervous system ganglion" EXACT [OBOL:automatic]
synonym: "ganglion of neuraxis" EXACT [OBOL:automatic]
synonym: "neuraxis ganglion" EXACT [OBOL:automatic]
xref: EHDAA2:0000227
xref: EMAPA:16658
xref: FMA:83843
is_a: UBERON:0000045 ! ganglion
relationship: part_of UBERON:0001017
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0001017 ! central nervous system
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0003340
name: urethra of urogenital sinus
xref: EMAPA:30891
is_obsolete: true
[Term]
id: UBERON:0003341
name: urethra of urinary system
xref: EMAPA:30901
is_obsolete: true
[Term]
id: UBERON:0003342
name: mucosa of anal canal
def: "A mucosa that is part of an anal canal [Obol]." [OBOL:automatic]
synonym: "anal canal mucosa" EXACT [OBOL:automatic]
synonym: "anal canal mucosa of organ" EXACT [OBOL:automatic]
synonym: "anal canal mucous membrane" EXACT [OBOL:automatic]
synonym: "anal canal organ mucosa" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically mucosa" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically mucosa of organ" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically mucous membrane" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically organ mucosa" EXACT [OBOL:automatic]
synonym: "anal mucosa" EXACT [FMA:74654]
synonym: "anal mucous membrane" EXACT [FMA:74654]
synonym: "anal region mucosa" EXACT [OBOL:automatic]
synonym: "anal region mucosa of organ" EXACT [OBOL:automatic]
synonym: "anal region mucous membrane" EXACT [OBOL:automatic]
synonym: "anal region organ mucosa" EXACT [OBOL:automatic]
synonym: "anatomical anal canal mucosa" EXACT [OBOL:automatic]
synonym: "anatomical anal canal mucosa of organ" EXACT [OBOL:automatic]
synonym: "anatomical anal canal mucous membrane" EXACT [OBOL:automatic]
synonym: "anatomical anal canal organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "mucosa of anal region" EXACT [OBOL:automatic]
synonym: "mucosa of anatomical anal canal" EXACT [OBOL:automatic]
synonym: "mucosa of organ of anal canal" EXACT [OBOL:automatic]
synonym: "mucosa of organ of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "mucosa of organ of anal region" EXACT [OBOL:automatic]
synonym: "mucosa of organ of anatomical anal canal" EXACT [OBOL:automatic]
synonym: "mucous membrane of anal canal" EXACT [OBOL:automatic]
synonym: "mucous membrane of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "mucous membrane of anal region" EXACT [OBOL:automatic]
synonym: "mucous membrane of anatomical anal canal" EXACT [OBOL:automatic]
synonym: "organ mucosa of anal canal" EXACT [OBOL:automatic]
synonym: "organ mucosa of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "organ mucosa of anal region" EXACT [OBOL:automatic]
synonym: "organ mucosa of anatomical anal canal" EXACT [OBOL:automatic]
xref: EMAPA:27531
xref: FMA:74654
xref: ncithesaurus:Anal_Mucosa
xref: SCTID:362170004
is_a: UBERON:0001207 ! mucosa of large intestine
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000159
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000159 ! anal canal
relationship: part_of UBERON:0000159 ! anal canal
[Term]
id: UBERON:0003343
name: mucosa of oral region
def: "A mucosa that is part of a oral opening [Obol]." [OBOL:automatic]
synonym: "mucosa of oral opening" EXACT [OBOL:automatic]
synonym: "mucosa of oral part of face" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral opening" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral part of face" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral region" EXACT [OBOL:automatic]
synonym: "mucosa of organ of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "mucosa of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral opening" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral part of face" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral region" EXACT [OBOL:automatic]
synonym: "mucous membrane of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "oral opening mucosa" EXACT [OBOL:automatic]
synonym: "oral opening mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral opening mucous membrane" EXACT [OBOL:automatic]
synonym: "oral opening organ mucosa" EXACT [OBOL:automatic]
synonym: "oral part of face mucosa" EXACT [OBOL:automatic]
synonym: "oral part of face mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral part of face mucous membrane" EXACT [OBOL:automatic]
synonym: "oral part of face organ mucosa" EXACT [OBOL:automatic]
synonym: "oral region mucosa" EXACT [OBOL:automatic]
synonym: "oral region mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral region mucous membrane" EXACT [OBOL:automatic]
synonym: "oral region organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral opening" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral part of face" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral region" EXACT [OBOL:automatic]
synonym: "organ mucosa of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "subdivision of mouth mucosa" EXACT [OBOL:automatic]
synonym: "subdivision of mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "subdivision of mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "subdivision of mouth organ mucosa" EXACT [OBOL:automatic]
xref: EMAPA:26937
xref: SCTID:362083000
is_a: UBERON:0003729 ! mouth mucosa
is_a: UBERON:0004785 ! respiratory system mucosa
relationship: part_of UBERON:0000166
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000166 ! oral opening
relationship: part_of UBERON:0000166 ! oral opening
[Term]
id: UBERON:0003346
name: mucosa of rectum
def: "A mucosa that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of rectum" EXACT [OBOL:automatic]
synonym: "mucous membrane of rectum" EXACT [OBOL:automatic]
synonym: "organ mucosa of rectum" EXACT [OBOL:automatic]
synonym: "rectal mucosa" EXACT [FMA:15033]
synonym: "rectal mucous membrane" EXACT [FMA:15033]
synonym: "rectum mucosa" EXACT [OBOL:automatic]
synonym: "rectum mucosa of organ" EXACT [OBOL:automatic]
synonym: "rectum mucous membrane" EXACT [OBOL:automatic]
synonym: "rectum organ mucosa" EXACT [OBOL:automatic]
xref: EMAPA:27081
xref: EMAPA:27319
xref: FMA:15033
xref: SCTID:362167003
is_a: UBERON:0001207 ! mucosa of large intestine
relationship: part_of UBERON:0001052
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001052 ! rectum
relationship: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003350
name: epithelium of mucosa
def: "A layer of epithelial cells on the surface of the mucosa." [BTO:0003752]
synonym: "lamina epithelialis mucosa" RELATED [BTO:0003752]
synonym: "lamina epithelialis mucosae" RELATED [BTO:0003752]
xref: BTO:0003752
xref: EMAPA:18668
xref: EMAPA:18835
xref: EMAPA:18857
xref: EMAPA:18862
xref: EMAPA:18868
xref: EMAPA:18893
xref: EMAPA:18899
xref: EMAPA:18912
xref: EMAPA:18917
xref: EMAPA:18927
xref: EMAPA:18934
xref: EMAPA:18941
xref: EMAPA:19078
xref: EMAPA:26961
xref: EMAPA:26985
xref: EMAPA:27019
xref: EMAPA:27033
xref: EMAPA:27047
xref: EMAPA:27061
xref: EMAPA:27075
xref: EMAPA:27089
xref: EMAPA:27103
xref: EMAPA:27131
xref: EMAPA:27145
xref: EMAPA:27159
xref: EMAPA:27175
xref: EMAPA:27191
xref: EMAPA:27207
xref: EMAPA:27219
xref: EMAPA:27229
xref: EMAPA:27307
is_a: UBERON:0000483 ! epithelium
relationship: part_of UBERON:0000344
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000344 ! mucosa
relationship: part_of UBERON:0000344 ! mucosa
[Term]
id: UBERON:0003351
name: pharyngeal epithelium
def: "An epithelium that is part of a pharynx [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "epithelial tissue of pharynx" EXACT [OBOL:automatic]
synonym: "epithelium of pharynx" EXACT [OBOL:automatic]
synonym: "pharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "pharynx epithelium" EXACT [OBOL:automatic]
xref: EMAPA:16551
xref: EMAPA:16708
xref: MA:0002725
xref: RETIRED_EHDAA2:0001460
xref: TAO:0001174
xref: XAO:0003202
xref: ZFA:0001174
property_value: UBPROP:0000001 "Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side. Chen et al, 2007.[TAO]" xsd:string
is_a: UBERON:0000490 {source="ZFA"} ! unilaminar epithelium
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004807 ! respiratory system epithelium
relationship: part_of UBERON:0001042
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001042 ! chordate pharynx
relationship: develops_from UBERON:0007690 {source="ZFA"} ! early pharyngeal endoderm
relationship: part_of UBERON:0001042 {source="ZFA"} ! chordate pharynx
relationship: part_of UBERON:0001042 ! chordate pharynx
[Term]
id: UBERON:0003352
name: epithelium of midgut
synonym: "epithelial tissue of midgut" EXACT [OBOL:automatic]
synonym: "midgut epithelial tissue" EXACT [OBOL:automatic]
synonym: "midgut epithelium" EXACT [BTO:0005053]
synonym: "midgut epithelium" EXACT [OBOL:automatic]
xref: BTO:0005053
xref: EHDAA2:0001195
xref: EMAPA:16569
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0001045
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001045 ! midgut
relationship: part_of UBERON:0001045 {source="BTO"} ! midgut
relationship: part_of UBERON:0001045 ! midgut
[Term]
id: UBERON:0003353
name: epithelium of hindgut
def: "An epithelium that is part of a hindgut [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of hindgut" EXACT [OBOL:automatic]
synonym: "hindgut epithelial tissue" EXACT [OBOL:automatic]
synonym: "hindgut epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0000782
xref: EMAPA:16717
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0001046
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001046 ! hindgut
relationship: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0003354
name: epithelium of rectum
def: "An epithelium that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of rectum" EXACT [OBOL:automatic]
synonym: "rectal epithelium" EXACT [FMA:17510]
synonym: "rectum epithelial tissue" EXACT [OBOL:automatic]
synonym: "rectum epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0001594
xref: EMAPA:17898
xref: FMA:17510
xref: VHOG:0001037
xref: WBbt:0005800
is_a: UBERON:0001278 ! epithelium of large intestine
relationship: part_of UBERON:0001052
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001052 ! rectum
relationship: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003355
name: epithelium of incisor
def: "An epithelium that is part of a incisor tooth [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of incisor" EXACT [OBOL:automatic]
synonym: "epithelial tissue of incisor tooth" EXACT [OBOL:automatic]
synonym: "epithelium of incisor tooth" EXACT [OBOL:automatic]
synonym: "incisor epithelial tissue" EXACT [OBOL:automatic]
synonym: "incisor epithelium" EXACT [OBOL:automatic]
synonym: "incisor tooth epithelial tissue" EXACT [OBOL:automatic]
synonym: "incisor tooth epithelium" EXACT [OBOL:automatic]
xref: EMAPA:17919
xref: EMAPA:17940
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001098
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001098 ! incisor tooth
relationship: part_of UBERON:0001098 ! incisor tooth
[Term]
id: UBERON:0003356
name: epithelium of nasal septum
def: "An epithelium that is part of a nasal septum [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of nasal septum" EXACT [OBOL:automatic]
synonym: "nasal septum epithelial tissue" EXACT [OBOL:automatic]
synonym: "nasal septum epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18442
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001706
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001706 ! nasal septum
relationship: part_of UBERON:0001706 ! nasal septum
[Term]
id: UBERON:0003357
name: epithelium of tongue
def: "An epithelium that is part of a tongue [Obol]." [OBOL:automatic]
comment: examples: tongue squamous epithelium, keratined, non-keratinized and parakeratinized epithelium, as well as gustatory epithelium. Note that not all these subtypes are named in individual anatomy ontologies.
synonym: "epithelial tissue of tongue" EXACT [OBOL:automatic]
synonym: "lingual epithelium" RELATED [BTO:0000992]
synonym: "tongue epithelial tissue" EXACT [OBOL:automatic]
synonym: "tongue epithelium" EXACT [OBOL:automatic]
xref: BTO:0000992
xref: EHDAA2:0004598
xref: EMAPA:17881
xref: EMAPA:18872
xref: MA:0001592
xref: ncithesaurus:Tongue_Epithelium
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001723
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001723 ! tongue
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0003358
name: epithelium of soft palate
def: "An epithelium that is part of a soft palate [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of soft palate" EXACT [OBOL:automatic]
synonym: "soft palate epithelial tissue" EXACT [OBOL:automatic]
synonym: "soft palate epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18950
is_a: UBERON:0003235 ! epithelium of upper jaw
relationship: part_of UBERON:0001733
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001733 ! soft palate
relationship: part_of UBERON:0001733 ! soft palate
[Term]
id: UBERON:0003359
name: epithelium of submandibular gland
def: "An epithelium that is part of a submandibular gland [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of submandibular gland" EXACT [OBOL:automatic]
synonym: "submandibular gland duct epithelium" RELATED [BTO:0004557]
synonym: "submandibular gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "submandibular gland epithelium" EXACT [OBOL:automatic]
xref: BTO:0004557
xref: EMAPA:18813
xref: VHOG:0000989
is_a: UBERON:0004809 ! salivary gland epithelium
relationship: part_of UBERON:0001736
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001736 ! submandibular gland
relationship: part_of UBERON:0001736 ! submandibular gland
[Term]
id: UBERON:0003360
name: epithelium of parotid gland
def: "An epithelium that is part of a parotid gland [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of parotid gland" EXACT [OBOL:automatic]
synonym: "epithelium of parotid" EXACT [OBOL:automatic]
synonym: "epithelium of parotid gland" EXACT [OBOL:automatic]
synonym: "parotid epithelial tissue" EXACT [OBOL:automatic]
synonym: "parotid epithelium" EXACT [OBOL:automatic]
synonym: "parotid gland duct epithelium" RELATED [BTO:0004555]
synonym: "parotid gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "parotid gland epithelium" EXACT [OBOL:automatic]
xref: BTO:0004555
xref: EMAPA:18538
xref: VHOG:0001434
is_a: UBERON:0004809 ! salivary gland epithelium
relationship: part_of UBERON:0001831
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001831 ! parotid gland
relationship: part_of UBERON:0001831 ! parotid gland
[Term]
id: UBERON:0003361
name: epithelium of sublingual gland
def: "An epithelium that is part of a sublingual gland [Obol]." [OBOL:automatic]
synonym: "ductus sublingualis epithelial tissue" EXACT [OBOL:automatic]
synonym: "ductus sublingualis epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ductus sublingualis" EXACT [OBOL:automatic]
synonym: "epithelial tissue of Rivinus'gland" EXACT [OBOL:automatic]
synonym: "epithelial tissue of sublingual gland" EXACT [OBOL:automatic]
synonym: "epithelium of ductus sublingualis" EXACT [OBOL:automatic]
synonym: "epithelium of Rivinus'gland" EXACT [OBOL:automatic]
synonym: "Rivinus'gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "Rivinus'gland epithelium" EXACT [OBOL:automatic]
synonym: "sublingual gland duct epithelium" RELATED [BTO:0004559]
synonym: "sublingual gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "sublingual gland epithelium" EXACT [OBOL:automatic]
xref: BTO:0004559
xref: EMAPA:18810
xref: VHOG:0001098
is_a: UBERON:0004809 ! salivary gland epithelium
relationship: part_of UBERON:0001832
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001832 ! sublingual gland
relationship: part_of UBERON:0001832 ! sublingual gland
[Term]
id: UBERON:0003362
name: epithelium of endolymphatic duct
def: "An epithelium that is part of a endolymphatic duct [Obol]." [OBOL:automatic]
synonym: "endolymphatic duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "endolymphatic duct epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of endolymphatic duct" EXACT [OBOL:automatic]
xref: EMAPA:18582
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001860
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001860 ! endolymphatic duct
relationship: part_of UBERON:0001860 ! endolymphatic duct
[Term]
id: UBERON:0003363
name: epithelium of ductus reuniens
def: "An epithelium that is part of a ductus reuniens [Obol]." [OBOL:automatic]
synonym: "ductus reuniens epithelial tissue" EXACT [OBOL:automatic]
synonym: "ductus reuniens epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ductus reuniens" EXACT [OBOL:automatic]
xref: EMAPA:17289
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001861
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001861 ! ductus reuniens
relationship: part_of UBERON:0001861 ! ductus reuniens
[Term]
id: UBERON:0003364
name: epithelium of right lung
def: "An epithelium that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of right lung" EXACT [OBOL:automatic]
synonym: "right lung epithelial tissue" EXACT [OBOL:automatic]
synonym: "right lung epithelium" EXACT [OBOL:automatic]
xref: EMAPA:17663
is_a: UBERON:0000115 ! lung epithelium
relationship: part_of UBERON:0002167
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003365
name: epithelium of left lung
def: "An epithelium that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of left lung" EXACT [OBOL:automatic]
synonym: "left lung epithelial tissue" EXACT [OBOL:automatic]
synonym: "left lung epithelium" EXACT [OBOL:automatic]
xref: EMAPA:17655
is_a: UBERON:0000115 ! lung epithelium
relationship: part_of UBERON:0002168
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003366
name: epithelium of uterine horn
def: "An epithelium that is part of a uterine horn [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of uterine horn" EXACT [OBOL:automatic]
synonym: "uterine horn epithelial tissue" EXACT [OBOL:automatic]
synonym: "uterine horn epithelium" EXACT [OBOL:automatic]
xref: EMAPA:29030
is_a: UBERON:0006955 ! uterine epithelium
relationship: part_of UBERON:0002247
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002247 ! uterine horn
relationship: part_of UBERON:0002247 ! uterine horn
[Term]
id: UBERON:0003367
name: epithelium of vomeronasal organ
def: "An epithelium that is part of a vomeronasal organ [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of Jacobson's organ" EXACT [OBOL:automatic]
synonym: "epithelial tissue of vomeronasal organ" EXACT [OBOL:automatic]
synonym: "epithelium of Jacobson's organ" EXACT [OBOL:automatic]
synonym: "Jacobson's organ epithelial tissue" EXACT [OBOL:automatic]
synonym: "Jacobson's organ epithelium" EXACT [OBOL:automatic]
synonym: "vomeronasal epithelium" EXACT [EHDAA2:0004102]
synonym: "vomeronasal organ epithelial tissue" EXACT [OBOL:automatic]
synonym: "vomeronasal organ epithelium" EXACT [OBOL:automatic]
synonym: "vomeronasal organ sensory epithelium" EXACT [MA:0001328]
xref: EHDAA2:0004102
xref: EMAPA:18444
xref: MA:0001328
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0002255
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002255 ! vomeronasal organ
relationship: develops_from UBERON:0001997 {source="EHDAA2"} ! olfactory epithelium
relationship: part_of UBERON:0002255 ! vomeronasal organ
[Term]
id: UBERON:0003368
name: epithelium of hard palate
def: "An epithelium that is part of a hard palate [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of hard palate" EXACT [OBOL:automatic]
synonym: "hard palate epithelial tissue" EXACT [OBOL:automatic]
synonym: "hard palate epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18953
is_a: UBERON:0003235 ! epithelium of upper jaw
relationship: part_of UBERON:0003216
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003216 ! hard palate
relationship: part_of UBERON:0003216 ! hard palate
[Term]
id: UBERON:0003369
name: fossa ovalis of heart
def: "Found in the right atrium of the heart, the fossa ovalis is an embryonic remnant of the foramen ovale, which normally closes shortly after birth. In a heart specimen of a neonate, the fossa ovalis is translucent, but later in life the membrane thickens." [Wikipedia:Fossa_ovalis_(heart)]
synonym: "fossa ovalis" EXACT [FMA:9246]
synonym: "oval fossa" EXACT [FMA:9246]
xref: FMA:9246
xref: SCTID:277719009
is_a: UBERON:0006984 {source="FMA"} ! anatomical surface
relationship: develops_from UBERON:0004754 {source="Wikipedia"} ! foramen ovale of heart
relationship: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0003371
name: pelvic appendage bud ectoderm
alt_id: UBERON:0005232
synonym: "hindlimb bud ectoderm" NARROW SENSU []
synonym: "hindlimb ectoderm" EXACT [VHOG:0001048]
synonym: "hindlimb ectoderm" NARROW SENSU [VHOG:0001048]
synonym: "leg ectoderm" RELATED [OBOL:automatic]
synonym: "lower limb bud ectoderm" NARROW SENSU [EHDAA2:0001034]
synonym: "pelvic fin bud ectoderm" NARROW SENSU []
xref: EHDAA2:0001034
xref: EMAPA:17254
xref: VHOG:0001048
is_a: UBERON:0000924 ! ectoderm
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0005420
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0005420 ! hindlimb/pelvic fin bud
relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm
relationship: part_of UBERON:0005420 ! hindlimb/pelvic fin bud
[Term]
id: UBERON:0003372
name: pectoral appendage bud ectoderm
alt_id: UBERON:0005231
alt_id: UBERON:0005663
synonym: "arm ectoderm" RELATED [OBOL:automatic]
synonym: "forelimb bud ectoderm" NARROW SENSU []
synonym: "forelimb ectoderm" NARROW SENSU [VHOG:0001047]
synonym: "pectoral fin bud ectoderm" NARROW SENSU []
synonym: "upper limb bud ectoderm" NARROW SENSU [EHDAA2:0002134]
synonym: "wing ectoderm" NARROW SENSU [Geisha:syn]
xref: EHDAA2:0002134
xref: EMAPA:17243
xref: VHOG:0001047
is_a: UBERON:0000924 ! ectoderm
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0005419
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0005419 ! forelimb/pectoral fin bud
relationship: part_of UBERON:0005419 ! forelimb/pectoral fin bud
[Term]
id: UBERON:0003373
name: ectoderm of footplate
xref: EMAPA:17250
is_a: UBERON:0000924 ! ectoderm
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0006871
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0006871 ! footplate
relationship: part_of UBERON:0006871 ! footplate
[Term]
id: UBERON:0003374
name: chorionic ectoderm
synonym: "chorion ectoderm" EXACT [OBOL:automatic]
xref: EMAPA:16113
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0000924
relationship: part_of UBERON:0003124
intersection_of: UBERON:0000478 ! extraembryonic structure
intersection_of: develops_from UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0003124 ! chorion
relationship: develops_from UBERON:0000924 {source="ISBN10:0073040584"} ! ectoderm
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0003378
name: cardiac muscle of auricular region
synonym: "auricular region heart muscle" EXACT []
synonym: "cardiac muscle tissue of auricle" EXACT [FMA:84279]
xref: FMA:84279
is_a: UBERON:0004490 ! cardiac muscle tissue of atrium
relationship: part_of UBERON:0006618
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0006618 ! atrium auricular region
relationship: part_of UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0006618 ! atrium auricular region
[Term]
id: UBERON:0003379
name: cardiac muscle of right atrium
def: "A portion of cardiac muscle tissue that is part of a right atrium [Obol]." [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac right atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "cardiac right atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart right atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "heart right atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "right atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "right atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "right atrium of heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "right cardiac atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "right cardiac atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of right cardiac atrium" EXACT [OBOL:automatic]
xref: EHDAA2:0004155
xref: EMAPA:17326
xref: FMA:7282
xref: VHOG:0001227
is_a: UBERON:0004490 ! cardiac muscle tissue of atrium
relationship: part_of UBERON:0002078
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002078 ! right atrium
relationship: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0003380
name: cardiac muscle of left atrium
def: "A portion of cardiac muscle tissue that is part of a left atrium [Obol]." [OBOL:automatic]
synonym: "cardiac left atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "cardiac left atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart left atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "heart left atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "left atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "left atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "left atrium of heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "left cardiac atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "left cardiac atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of left cardiac atrium" EXACT [OBOL:automatic]
xref: EHDAA2:0004154
xref: EMAPA:17320
xref: FMA:7285
xref: VHOG:0001225
is_a: UBERON:0004490 ! cardiac muscle tissue of atrium
relationship: part_of UBERON:0002079
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002079 ! left atrium
relationship: part_of UBERON:0002079 ! left atrium
[Term]
id: UBERON:0003381
name: cardiac muscle of right ventricle
def: "A portion of cardiac muscle tissue that is part of a right ventricle [Obol]." [OBOL:automatic]
synonym: "right ventricular cardiac muscle tissue" EXACT [GO:0003221]
xref: EMAPA:17342
xref: FMA:83452
xref: VHOG:0001236
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002080
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0002080 ! heart right ventricle
[Term]
id: UBERON:0003382
name: cardiac muscle of left ventricle
def: "A portion of cardiac muscle tissue that is part of a left ventricle [Obol]." [OBOL:automatic]
synonym: "left ventricular cardiac muscle tissue" EXACT [GO:0003220]
xref: EMAPA:17339
xref: FMA:83453
xref: VHOG:0001234
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002084
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0002084 ! heart left ventricle
[Term]
id: UBERON:0003383
name: cardiac muscle of interventricular septum
def: "A portion of cardiac muscle tissue that is part of a interventricular septum [Obol]." [OBOL:automatic]
synonym: "interventricular septum cardiac muscle" EXACT [VHOG:0000999]
synonym: "interventricular septum heart muscle" EXACT [EHDAA2:0004158]
xref: EHDAA2:0004158
xref: EMAPA:17335
xref: FMA:84084
xref: VHOG:0000999
is_a: UBERON:0004492 ! cardiac muscle tissue of cardiac septum
is_a: UBERON:0004667 ! interventricular septum muscular part
relationship: part_of UBERON:0002094
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002094 ! interventricular septum
relationship: part_of UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0003384
name: skeletal muscle of pharynx
def: "A portion of skeletal muscle tissue that is part of a pharynx [Obol]." [OBOL:automatic]
synonym: "pharynx skeletal muscle" EXACT [OBOL:automatic]
synonym: "pharynx skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of pharynx" EXACT [OBOL:automatic]
xref: EMAPA:18963
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004830 ! respiratory system skeletal muscle
relationship: part_of UBERON:0001042
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001042 ! chordate pharynx
[Term]
id: UBERON:0003385
name: skeletal muscle of mesenchyme
def: "A portion of skeletal muscle tissue that is part of a mesenchyme [Obol]." [OBOL:automatic]
synonym: "mesenchyme skeletal muscle" EXACT [OBOL:automatic]
synonym: "mesenchyme skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:19066
xref: EMAPA:19071
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0003104
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0003386
name: smooth muscle of eye
def: "A portion of smooth muscle tissue that is part of a eye [Obol]." [OBOL:automatic]
synonym: "ocular smooth muscle" EXACT [MA:0001268]
xref: EMAPA:18807
xref: MA:0001268
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000019
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0003387
name: smooth muscle of trachea
alt_id: UBERON:0004244
def: "A portion of smooth muscle tissue that is part of a trachea [Obol]." [OBOL:automatic]
synonym: "trachea smooth muscle" EXACT [MA:0001863]
synonym: "tracheal smooth muscle" EXACT [BTO:0001391]
xref: BTO:0001391
xref: EMAPA:19192
xref: FMA:262010
xref: MA:0001863
xref: ncithesaurus:Trachea_Smooth_Muscle_Tissue
is_a: UBERON:0004233 ! lower respiratory tract smooth muscle
relationship: part_of UBERON:0003126
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0003126 ! trachea
relationship: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003388
name: mesothelium of pericardial cavity
def: "A mesothelium that is part of a pericardial cavity [Obol]." [OBOL:automatic]
synonym: "cavity of pericardial sac meso-epithelium" EXACT [OBOL:automatic]
synonym: "cavity of pericardial sac mesothelium" EXACT [OBOL:automatic]
synonym: "meso-epithelium of cavity of pericardial sac" EXACT [OBOL:automatic]
synonym: "meso-epithelium of pericardial cavity" EXACT [OBOL:automatic]
synonym: "mesothelium of cavity of pericardial sac" EXACT [OBOL:automatic]
synonym: "pericardial cavity meso-epithelium" EXACT [OBOL:automatic]
synonym: "pericardial cavity mesothelium" EXACT [OBOL:automatic]
xref: EMAPA:18449
xref: RETIRED_EHDAA2:0001436
is_a: UBERON:0001136 ! mesothelium
relationship: part_of UBERON:0001074
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0001074 ! pericardial cavity
relationship: part_of UBERON:0001074 ! pericardial cavity
[Term]
id: UBERON:0003389
name: mesothelium of diaphragm
def: "A mesothelium that is part of a diaphragm [Obol]." [OBOL:automatic]
synonym: "diaphragm meso-epithelium" EXACT [OBOL:automatic]
synonym: "diaphragm mesothelium" EXACT [OBOL:automatic]
synonym: "meso-epithelium of diaphragm" EXACT [OBOL:automatic]
synonym: "meso-epithelium of thoracic diaphragm" EXACT [OBOL:automatic]
synonym: "mesothelium of thoracic diaphragm" EXACT [OBOL:automatic]
synonym: "thoracic diaphragm meso-epithelium" EXACT [OBOL:automatic]
synonym: "thoracic diaphragm mesothelium" EXACT [OBOL:automatic]
xref: EMAPA:18429
is_a: UBERON:0001136 ! mesothelium
is_a: UBERON:0004807 ! respiratory system epithelium
relationship: part_of UBERON:0001103
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0001103 ! diaphragm
relationship: part_of UBERON:0001103 ! diaphragm
[Term]
id: UBERON:0003390
name: mesothelium of pleural cavity
def: "A mesothelium that is part of a pleural cavity [Obol]." [OBOL:automatic]
synonym: "meso-epithelium of pleural cavity" EXACT [OBOL:automatic]
synonym: "pleural cavity meso-epithelium" EXACT [OBOL:automatic]
synonym: "pleural cavity mesothelium" EXACT [OBOL:automatic]
xref: BTO:0003155
xref: EHDAA2:0001476
xref: EMAPA:18463
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001136 ! mesothelium
is_a: UBERON:0004815 ! lower respiratory tract epithelium
relationship: part_of UBERON:0002402
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0002402 ! pleural cavity
relationship: part_of UBERON:0002402 ! pleural cavity
[Term]
id: UBERON:0003393
name: mesentery of urinary system
def: "A mesentery that is part of a urinary system [Obol]." [OBOL:automatic]
synonym: "excretory system mesentery" EXACT [OBOL:automatic]
synonym: "mesentery of excretory system" EXACT [OBOL:automatic]
synonym: "mesentery of renal system" EXACT [OBOL:automatic]
synonym: "mesentery of systema urinaria" EXACT [OBOL:automatic]
synonym: "renal system mesentery" EXACT [OBOL:automatic]
synonym: "systema urinaria mesentery" EXACT [OBOL:automatic]
synonym: "urinary system mesentery" EXACT [OBOL:automatic]
xref: EMAPA:17367
is_a: UBERON:0002095 ! mesentery
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001008
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001008 ! excretory system
relationship: part_of UBERON:0001008 ! excretory system
[Term]
id: UBERON:0003394
name: mesentery of hindgut
def: "A mesentery that is part of a hindgut [Obol]." [OBOL:automatic]
synonym: "hindgut mesentery" EXACT [OBOL:automatic]
xref: EMAPA:16718
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002095 ! mesentery
relationship: part_of UBERON:0001046
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001046 ! hindgut
relationship: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0003395
name: mesentery of rectum
def: "A mesentery that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "rectum mesentery" EXACT [OBOL:automatic]
xref: EMAPA:18664
xref: EMAPA:18929
is_a: UBERON:0003334 ! serosa of rectum
is_a: UBERON:0004854 ! gastrointestinal system mesentery
relationship: part_of UBERON:0001052
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001052 ! rectum
relationship: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003396
name: mesentery of colon
def: "A mesentery that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon mesentery" EXACT [OBOL:automatic]
synonym: "large bowel mesentery" EXACT [OBOL:automatic]
synonym: "large intestinal mesentery" EXACT [FMA:14645]
synonym: "mesentery of large bowel" EXACT [OBOL:automatic]
synonym: "mesentery of large intestine" EXACT [FMA:14645]
xref: EMAPA:18942
xref: FMA:14645
xref: SCTID:245457004
is_a: UBERON:0003335 ! serosa of colon
is_a: UBERON:0004854 ! gastrointestinal system mesentery
is_a: UBERON:0007826 {source="FMA"} ! peritoneal mesentery
relationship: part_of UBERON:0001155
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001155 ! colon
relationship: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0003397
name: mesentery of duodenum
def: "A mesentery that is part of a duodenum [Obol]." [OBOL:automatic]
synonym: "duodenum mesentery" EXACT [OBOL:automatic]
xref: EMAPA:19081
is_a: UBERON:0001170 ! mesentery of small intestine
is_a: UBERON:0003336 ! serosa of duodenum
relationship: part_of UBERON:0002114
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0002114 ! duodenum
relationship: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0003398
name: mesentery of jejunum
def: "A mesentery that is part of a jejunum [Obol]." [OBOL:automatic]
synonym: "jejunal mesentery" EXACT []
synonym: "jejunum mesentery" EXACT []
synonym: "mesojejunum" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html]
xref: EMAPA:18670
xref: EMAPA:18937
xref: FMA:14651
xref: SCTID:261286003
is_a: UBERON:0001170 ! mesentery of small intestine
is_a: UBERON:0003337 ! serosa of jejunum
relationship: part_of UBERON:0002115
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0002115 ! jejunum
relationship: part_of UBERON:0002115 ! jejunum
[Term]
id: UBERON:0003403
name: skin of forearm
def: "A zone of skin that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region skin" EXACT [OBOL:automatic]
synonym: "arm middle limb segment skin" EXACT [OBOL:automatic]
synonym: "arm zeugopod skin" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment skin" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod skin" EXACT [OBOL:automatic]
synonym: "forearm skin" EXACT [FMA:38265]
synonym: "intermediate segment of free upper limb skin" EXACT [OBOL:automatic]
synonym: "lower arm skin" EXACT [OBOL:automatic]
synonym: "lower segment of arm skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb skin" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment skin" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod skin" EXACT [OBOL:automatic]
synonym: "skin of antebrachial region" EXACT [OBOL:automatic]
synonym: "skin of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of arm zeugopod" EXACT [OBOL:automatic]
synonym: "skin of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "skin of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "skin of lower arm" EXACT [OBOL:automatic]
synonym: "skin of lower segment of arm" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "skin of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "zeugopod of arm skin" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region skin" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb skin" EXACT [OBOL:automatic]
xref: EMAPA:18056
xref: FMA:38265
xref: MA:0000602
xref: SCTID:181537008
is_a: UBERON:0002427 ! arm skin
relationship: part_of UBERON:0002386
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0003404
name: lobar bronchus of right lung
def: "A lobar bronchus that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "right lung lobar bronchus" EXACT [OBOL:automatic]
synonym: "right lung secondary bronchus" EXACT [OBOL:automatic]
synonym: "secondary bronchus of right lung" EXACT [OBOL:automatic]
xref: EMAPA:17664
is_a: UBERON:0002183 ! lobar bronchus
relationship: part_of UBERON:0002167
intersection_of: UBERON:0002183 ! lobar bronchus
intersection_of: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003405
name: lobar bronchus of left lung
def: "A lobar bronchus that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "left lung lobar bronchus" EXACT [OBOL:automatic]
synonym: "left lung secondary bronchus" EXACT [OBOL:automatic]
synonym: "secondary bronchus of left lung" EXACT [OBOL:automatic]
xref: EMAPA:17656
is_a: UBERON:0002183 ! lobar bronchus
relationship: part_of UBERON:0002168
intersection_of: UBERON:0002183 ! lobar bronchus
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003406
name: cartilage of respiratory system
def: "A cartilage that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius cartilage" EXACT [OBOL:automatic]
synonym: "cartilage of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "respiratory system cartilage" EXACT [OBOL:automatic]
xref: EMAPA:18694
xref: MA:0001818
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003570 ! respiratory system connective tissue
relationship: part_of UBERON:0001004
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003407
name: cartilage of nasal septum
def: "A cartilage that is part of a nasal septum [Obol]." [OBOL:automatic]
synonym: "cartilago septal nasi" EXACT [FMA:59503]
synonym: "nasal septum cartilage" EXACT [OBOL:automatic]
synonym: "septal nasal cartilage" EXACT [FMA:59503]
xref: EMAPA:25091
xref: FMA:59503
is_a: UBERON:0001823 ! nasal cartilage
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001706
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0001706 ! nasal septum
relationship: part_of UBERON:0001706 ! nasal septum
[Term]
id: UBERON:0003408
name: gland of gut
def: "A gland that is part of a digestive tract [Obol]." [OBOL:automatic]
synonym: "digestive tract gland" EXACT [OBOL:automatic]
synonym: "gland of digestive tract" EXACT [OBOL:automatic]
synonym: "gland of lower gastrointestinal tract" EXACT [OBOL:automatic]
synonym: "gut gland" EXACT [OBOL:automatic]
synonym: "lower gastrointestinal tract gland" EXACT [OBOL:automatic]
xref: EMAPA:18815
is_a: UBERON:0002530 ! gland
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001555
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0003409
name: gland of tongue
def: "A gland that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "tongue gland" EXACT [OBOL:automatic]
xref: EMAPA:25097
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0010047 ! oral gland
relationship: part_of UBERON:0001723
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001723 ! tongue
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0003410
name: oropharyngeal gland
def: "A gland that is part of a oropharynx [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "gland of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "gland of oropharynx" EXACT [EMAPA:25095]
synonym: "oral part of pharynx gland" EXACT [OBOL:automatic]
synonym: "oropharynx gland" EXACT [OBOL:automatic]
xref: EMAPA:25095
is_a: UBERON:0003295 ! pharyngeal gland
relationship: part_of UBERON:0001729
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001729 ! oropharynx
relationship: part_of UBERON:0001729 ! oropharynx
[Term]
id: UBERON:0003411
name: mesenchyme of amnion
def: "A mesenchyme that is part of an amnion [Obol]." [OBOL:automatic]
synonym: "amnion mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:16265
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010333 ! extraembryonic membrane mesenchyme
relationship: part_of UBERON:0000305
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000305 ! amnion
relationship: part_of UBERON:0000305 ! amnion
[Term]
id: UBERON:0003412
name: hindlimb/pelvic fin bud mesenchyme
synonym: "leg mesenchyme" EXACT [OBOL:automatic]
synonym: "lower limb bud mesenchyme" EXACT [EHDAA2:0001035]
synonym: "mesoderm pelvic fin bud" NARROW SENSU [ZFA:0001386]
synonym: "pelvic fin bud mesenchyme" NARROW SENSU []
xref: EHDAA2:0001035
xref: EMAPA:17255
xref: TAO:0001386
xref: ZFA:0001386
property_value: UBPROP:0000001 "Mesoderm part of pelvic fin bud.[TAO]" xsd:string
is_a: UBERON:0010329 ! limb/fin bud mesenchyme
relationship: part_of UBERON:0005420
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0005420 ! hindlimb/pelvic fin bud
relationship: part_of UBERON:0005420 ! hindlimb/pelvic fin bud
[Term]
id: UBERON:0003413
name: forelimb/pectoral fin bud mesenchyme
alt_id: UBERON:0005703
synonym: "arm mesenchyme" EXACT [OBOL:automatic]
synonym: "mesoderm pectoral fin bud" NARROW SENSU [ZFA:0000789]
synonym: "pectoral fin bud mesenchyme" NARROW SENSU []
synonym: "upper limb bud mesenchyme" EXACT [EHDAA2:0002135]
synonym: "wing mesenchyme" NARROW [OBOL:automatic]
xref: EHDAA2:0002135
xref: EHDAA:1703
xref: EMAPA:17244
xref: TAO:0000789
xref: ZFA:0000789
property_value: UBPROP:0000001 "Mesoderm that is part of the pectoral fin bud.[TAO]" xsd:string
is_a: UBERON:0010329 ! limb/fin bud mesenchyme
relationship: part_of UBERON:0005419
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0005419 ! forelimb/pectoral fin bud
relationship: part_of UBERON:0005419 ! forelimb/pectoral fin bud
[Term]
id: UBERON:0003414
name: mesenchyme of mandible
def: "A mesenchyme that is part of a mandible [Obol]." [OBOL:automatic]
synonym: "bone of lower jaw mesenchyme" EXACT [OBOL:automatic]
synonym: "bone of ventral mandibular arch mesenchyme" EXACT [OBOL:automatic]
synonym: "bone organ of lower jaw mesenchyme" EXACT [OBOL:automatic]
synonym: "bone organ of ventral mandibular arch mesenchyme" EXACT [OBOL:automatic]
synonym: "lower jaw bone mesenchyme" EXACT [OBOL:automatic]
synonym: "lower jaw bone organ mesenchyme" EXACT [OBOL:automatic]
synonym: "mandible mesenchyme" EXACT [OBOL:automatic]
synonym: "mandibulla mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of bone of lower jaw" EXACT [OBOL:automatic]
synonym: "mesenchyme of bone of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "mesenchyme of bone organ of lower jaw" EXACT [OBOL:automatic]
synonym: "mesenchyme of bone organ of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower jaw bone" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower jaw bone organ" EXACT [OBOL:automatic]
synonym: "mesenchyme of mandibulla" EXACT [OBOL:automatic]
synonym: "mesenchyme of ventral mandibular arch bone" EXACT [OBOL:automatic]
synonym: "mesenchyme of ventral mandibular arch bone organ" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch bone mesenchyme" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch bone organ mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:17912
is_a: UBERON:0003324 ! mesenchyme of lower jaw
is_a: UBERON:0009891 ! facial mesenchyme
is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest
relationship: part_of UBERON:0001684
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001684 ! mandible
relationship: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0003415
name: mesenchyme of nasal septum
def: "A mesenchyme that is part of a nasal septum [Obol]." [OBOL:automatic]
synonym: "nasal septum mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18443
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0009891 ! facial mesenchyme
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001706
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001706 ! nasal septum
relationship: part_of UBERON:0001706 ! nasal septum
[Term]
id: UBERON:0003416
name: mesenchyme of tongue
def: "A mesenchyme that is part of a tongue [Obol]." [OBOL:automatic]
comment: todo - develops_from
synonym: "tongue mesenchyme" EXACT [EHDAA2:0004614]
xref: EHDAA2:0004614
xref: EMAPA:17882
xref: EMAPA:18878
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001723
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001723 ! tongue
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0003417
name: mesenchyme of soft palate
def: "A mesenchyme that is part of a soft palate [Obol]." [OBOL:automatic]
synonym: "soft palate mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18951
is_a: UBERON:0003323 ! mesenchyme of upper jaw
relationship: part_of UBERON:0001733
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001733 ! soft palate
relationship: part_of UBERON:0001733 ! soft palate
[Term]
id: UBERON:0003418
name: mesenchyme of submandibular gland
def: "A mesenchyme that is part of a submandibular gland [Obol]." [OBOL:automatic]
synonym: "submandibular gland mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18814
xref: VHOG:0001110
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001736
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001736 ! submandibular gland
relationship: part_of UBERON:0001736 ! submandibular gland
[Term]
id: UBERON:0003419
name: mesenchyme of parotid
def: "A mesenchyme that is part of a parotid gland [Obol]." [OBOL:automatic]
synonym: "mesenchyme of parotid gland" EXACT [OBOL:automatic]
synonym: "parotid gland mesenchyme" EXACT [OBOL:automatic]
synonym: "parotid mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18539
xref: VHOG:0001435
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0009891 ! facial mesenchyme
relationship: part_of UBERON:0001831
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001831 ! parotid gland
relationship: part_of UBERON:0001831 ! parotid gland
[Term]
id: UBERON:0003420
name: mesenchyme of sublingual gland
def: "A mesenchyme that is part of a sublingual gland [Obol]." [OBOL:automatic]
synonym: "ductus sublingualis mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of ductus sublingualis" EXACT [OBOL:automatic]
synonym: "mesenchyme of Rivinus'gland" EXACT [OBOL:automatic]
synonym: "Rivinus'gland mesenchyme" EXACT [OBOL:automatic]
synonym: "sublingual gland mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18811
xref: VHOG:0001106
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001832
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001832 ! sublingual gland
relationship: part_of UBERON:0001832 ! sublingual gland
[Term]
id: UBERON:0003421
name: mesenchyme of vomeronasal organ
def: "A mesenchyme that is part of a vomeronasal organ [Obol]." [OBOL:automatic]
synonym: "Jacobson's organ mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of Jacobson's organ" EXACT [OBOL:automatic]
synonym: "vomeronasal mesenchyme" EXACT [EHDAA2:0004103]
synonym: "vomeronasal organ mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0004103
xref: EMAPA:18445
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
is_a: UBERON:0009891 ! facial mesenchyme
relationship: part_of UBERON:0002255
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002255 ! vomeronasal organ
relationship: develops_from UBERON:0009204 {source="EHDAA2"} ! medial nasal process mesenchyme
relationship: part_of UBERON:0002255 ! vomeronasal organ
[Term]
id: UBERON:0003422
name: mesenchyme of umbilical cord
def: "a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]" [Wikipedia:Wharton's_jelly]
comment: todo - check
synonym: "umbilical cord mesenchyme" EXACT [OBOL:automatic]
synonym: "Wharton's jelly" EXACT [EMAPA:26127]
xref: EMAPA:26127
xref: SCTID:368069009
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002331
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002331 ! umbilical cord
relationship: part_of UBERON:0002331 ! umbilical cord
[Term]
id: UBERON:0003423
name: mesenchyme of chorion
def: "A mesenchyme that is part of a chorion [Obol]." [OBOL:automatic]
synonym: "chorion mesenchyme" EXACT [OBOL:automatic]
synonym: "chorionic mesenchyme" EXACT [EHDAA2:0003245]
synonym: "mesenchyme of chorion (vertebrates)" EXACT [OBOL:automatic]
xref: EHDAA2:0003245
xref: EMAPA:16266
is_a: UBERON:0010333 ! extraembryonic membrane mesenchyme
relationship: part_of UBERON:0003124
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003124 ! chorion
relationship: develops_from UBERON:0005728 {source="EHDAA2"} ! extraembryonic mesoderm
relationship: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0003424
name: mesenchyme of hard palate
def: "A mesenchyme that is part of a hard palate [Obol]." [OBOL:automatic]
synonym: "hard palate mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18954
is_a: UBERON:0003323 ! mesenchyme of upper jaw
relationship: part_of UBERON:0003216
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003216 ! hard palate
relationship: part_of UBERON:0003216 ! hard palate
[Term]
id: UBERON:0003425
name: renal lymph node
def: "A lymph node that is part of a kidney [Obol]." [OBOL:automatic]
synonym: "kidney lymph node" EXACT [OBOL:automatic]
synonym: "lymph node of kidney" EXACT [OBOL:automatic]
xref: MA:0002882
xref: ncithesaurus:Renal_Lymph_Node
is_a: UBERON:0002507 ! abdominal lymph node
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002113
intersection_of: UBERON:0000029 ! lymph node
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0003426
name: dermis adipose tissue
def: "An adipose tissue that is part of a dermis [Obol]." [OBOL:automatic]
synonym: "adipose tissue of dermis" EXACT [OBOL:automatic]
synonym: "dermis fat tissue" EXACT [OBOL:automatic]
synonym: "dermis fatty tissue" EXACT [OBOL:automatic]
synonym: "fat tissue of dermis" EXACT [OBOL:automatic]
synonym: "fatty tissue of dermis" EXACT [OBOL:automatic]
xref: MA:0000798
is_a: UBERON:0001013 ! adipose tissue
is_a: UBERON:0003585 ! dermis connective tissue
relationship: part_of UBERON:0002067
intersection_of: UBERON:0001013 ! adipose tissue
intersection_of: part_of UBERON:0002067 ! dermis
relationship: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0003427
name: abdominal fat pad
def: "the encapsulated adipose tissue in the abdomen." [MP:0000010]
synonym: "abdomen fat pad" EXACT [OBOL:automatic]
synonym: "fat pad of abdomen" EXACT [OBOL:automatic]
xref: MA:0000472
is_a: UBERON:0003567 ! abdomen connective tissue
is_a: UBERON:0003916 ! fat pad
relationship: part_of UBERON:0000916
intersection_of: UBERON:0003916 ! fat pad
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003428
name: gonadal fat pad
def: "the encapsulated adipose tissue associated with the ovaries or testes." [MP:0005335]
synonym: "fat pad of gonad" EXACT [OBOL:automatic]
synonym: "fat pad of gonada" EXACT [OBOL:automatic]
synonym: "gonad fat pad" EXACT [OBOL:automatic]
synonym: "gonada fat pad" EXACT [OBOL:automatic]
xref: MA:0002547
is_a: UBERON:0003916 ! fat pad
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000991
intersection_of: UBERON:0003916 ! fat pad
intersection_of: part_of UBERON:0000991 ! gonad
relationship: part_of UBERON:0000991 ! gonad
[Term]
id: UBERON:0003429
name: abdomen nerve
def: "A nerve that is part of an abdomen [Obol]." [OBOL:automatic]
synonym: "nerve of abdomen" EXACT [OBOL:automatic]
xref: MA:0000521
is_a: UBERON:0003825 ! abdominal segment nerve
relationship: part_of UBERON:0000916
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003430
name: neck nerve
def: "A nerve that is part of a neck [Obol]." [OBOL:automatic]
synonym: "neck (volume) nerve" EXACT [OBOL:automatic]
synonym: "nerve of neck" EXACT [OBOL:automatic]
synonym: "nerve of neck (volume)" EXACT [OBOL:automatic]
xref: MA:0000588
is_a: UBERON:0001021 ! nerve
relationship: part_of UBERON:0000974
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003431
name: leg nerve
def: "A nerve that is part of a leg [Obol]." [OBOL:automatic]
synonym: "nerve of leg" EXACT [OBOL:automatic]
xref: MA:0000673
is_a: UBERON:0003442 ! hindlimb nerve
relationship: part_of UBERON:0000978
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003432
name: chest nerve
def: "A nerve that is part of a chest [Obol]." [OBOL:automatic]
synonym: "anterior thoracic region nerve" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax nerve" EXACT [OBOL:automatic]
synonym: "front of thorax nerve" EXACT [OBOL:automatic]
synonym: "nerve of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "nerve of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "nerve of chest" EXACT [OBOL:automatic]
synonym: "nerve of front of thorax" EXACT [OBOL:automatic]
xref: MA:0000551
is_a: UBERON:0003824 ! thoracic segment nerve
relationship: part_of UBERON:0001443
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0003433
name: arm nerve
def: "A nerve that is part of an arm [Obol]." [OBOL:automatic]
synonym: "brachial region nerve" EXACT [OBOL:automatic]
synonym: "nerve of arm" EXACT [OBOL:automatic]
synonym: "nerve of brachial region" EXACT [OBOL:automatic]
synonym: "nerve of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
xref: MA:0000595
is_a: UBERON:0003441 ! forelimb nerve
relationship: part_of UBERON:0001460
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003434
name: wrist nerve
def: "A nerve that is part of a wrist [Obol]." [OBOL:automatic]
synonym: "carpal region nerve" EXACT [OBOL:automatic]
synonym: "nerve of carpal region" EXACT [OBOL:automatic]
synonym: "nerve of wrist" EXACT [OBOL:automatic]
xref: MA:0000637
is_a: UBERON:0003448 ! hand nerve
relationship: part_of UBERON:0004452
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0004452 ! carpal region
relationship: part_of UBERON:0004452 ! carpal region
[Term]
id: UBERON:0003435
name: foot digit nerve
def: "A nerve that is part of a toe [Obol]." [OBOL:automatic]
synonym: "digit of foot nerve" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb nerve" EXACT [OBOL:automatic]
synonym: "digitus pedis nerve" EXACT [OBOL:automatic]
synonym: "nerve of digit of foot" EXACT [OBOL:automatic]
synonym: "nerve of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "nerve of digitus pedis" EXACT [OBOL:automatic]
synonym: "nerve of foot digit" EXACT [OBOL:automatic]
synonym: "nerve of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "nerve of toe" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit nerve" EXACT [OBOL:automatic]
synonym: "toe nerve" EXACT [OBOL:automatic]
xref: MA:0000649
xref: SCTID:300056004
is_a: UBERON:0003445 ! foot nerve
relationship: part_of UBERON:0001466
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit
[Term]
id: UBERON:0003436
name: shoulder nerve
def: "A nerve that is part of a shoulder [Obol]." [OBOL:automatic]
synonym: "nerve of shoulder" EXACT [OBOL:automatic]
xref: MA:0000634
is_a: UBERON:0001021 ! nerve
relationship: part_of UBERON:0001467
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003437
name: eyelid nerve
def: "A nerve that is part of a eyelid [Obol]." [OBOL:automatic]
synonym: "blepharon nerve" EXACT [OBOL:automatic]
synonym: "nerve of blepharon" EXACT [OBOL:automatic]
synonym: "nerve of eyelid" EXACT [OBOL:automatic]
xref: MA:0001255
is_a: UBERON:0001647 ! facial nerve
relationship: part_of UBERON:0001711
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001711 ! eyelid
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0003438
name: iris nerve
def: "A nerve that is part of a iris [Obol]." [OBOL:automatic]
synonym: "nerve of iris" EXACT [OBOL:automatic]
xref: MA:0001291
is_a: UBERON:0001647 ! facial nerve
relationship: part_of UBERON:0001769
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0003439
name: trunk nerve
def: "A nerve that is part of a trunk [Obol]." [OBOL:automatic]
synonym: "nerve of torso" EXACT [OBOL:automatic]
synonym: "nerve of trunk" EXACT [OBOL:automatic]
synonym: "torso nerve" EXACT [OBOL:automatic]
xref: EMAPA:16986
xref: MA:0000515
is_a: UBERON:0001021 ! nerve
relationship: part_of UBERON:0002100
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003440
name: limb nerve
def: "A nerve that is part of a limb [Obol]." [OBOL:automatic]
synonym: "nerve of limb" EXACT [OBOL:automatic]
xref: MA:0000693
xref: SCTID:359923002
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002101
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003441
name: forelimb nerve
def: "A nerve that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb nerve" EXACT [OBOL:automatic]
synonym: "fore limb nerve" EXACT [OBOL:automatic]
synonym: "nerve of anteriormost limb" EXACT [OBOL:automatic]
synonym: "nerve of fore limb" EXACT [OBOL:automatic]
synonym: "nerve of forelimb" EXACT [OBOL:automatic]
synonym: "nerve of superior member" EXACT [OBOL:automatic]
synonym: "nerve of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member nerve" EXACT [OBOL:automatic]
synonym: "upper extremity nerve" EXACT [OBOL:automatic]
xref: MA:0000616
is_a: UBERON:0003440 ! limb nerve
relationship: part_of UBERON:0002102
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003442
name: hindlimb nerve
def: "A nerve that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hind limb nerve" EXACT [OBOL:automatic]
synonym: "inferior member nerve" EXACT [OBOL:automatic]
synonym: "lower extremity nerve" EXACT [OBOL:automatic]
synonym: "nerve of hind limb" EXACT [OBOL:automatic]
synonym: "nerve of hindlimb" EXACT [OBOL:automatic]
synonym: "nerve of inferior member" EXACT [OBOL:automatic]
synonym: "nerve of lower extremity" EXACT [OBOL:automatic]
xref: MA:0000664
is_a: UBERON:0003440 ! limb nerve
relationship: part_of UBERON:0002103
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003443
name: thoracic cavity nerve
def: "A nerve that is part of a thoracic cavity [Obol]." [OBOL:automatic]
synonym: "cavity of chest nerve" EXACT [OBOL:automatic]
synonym: "cavity of thorax nerve" EXACT [OBOL:automatic]
synonym: "chest cavity nerve" EXACT [OBOL:automatic]
synonym: "nerve of cavity of chest" EXACT [OBOL:automatic]
synonym: "nerve of cavity of thorax" EXACT [OBOL:automatic]
synonym: "nerve of chest cavity" EXACT [OBOL:automatic]
synonym: "nerve of pectoral cavity" EXACT [OBOL:automatic]
synonym: "nerve of thoracic cavity" EXACT [OBOL:automatic]
synonym: "pectoral cavity nerve" EXACT [OBOL:automatic]
xref: MA:0000556
is_a: UBERON:0003824 ! thoracic segment nerve
relationship: part_of UBERON:0002224
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003444
name: pelvis nerve
def: "A nerve that is part of a pelvis [Obol]." [OBOL:automatic]
synonym: "nerve of pelvis" EXACT [OBOL:automatic]
xref: MA:0000542
is_a: UBERON:0003825 ! abdominal segment nerve
relationship: part_of UBERON:0002355
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003445
name: foot nerve
def: "A nerve that is part of a foot [Obol]." [OBOL:automatic]
synonym: "autopod of hind limb nerve" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb nerve" EXACT [OBOL:automatic]
synonym: "autopod of inferior member nerve" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity nerve" EXACT [OBOL:automatic]
synonym: "hind limb autopod nerve" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "hindlimb autopod nerve" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "inferior member autopod nerve" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "lower extremity autopod nerve" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "nerve of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "nerve of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "nerve of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "nerve of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "nerve of foot" EXACT [OBOL:automatic]
synonym: "nerve of hind limb autopod" EXACT [OBOL:automatic]
synonym: "nerve of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "nerve of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of inferior member autopod" EXACT [OBOL:automatic]
synonym: "nerve of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "nerve of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb nerve" EXACT [OBOL:automatic]
xref: MA:0000653
is_a: UBERON:0003442 ! hindlimb nerve
relationship: part_of UBERON:0002387
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003446
name: ankle nerve
def: "A nerve that is part of an ankle [Obol]." [OBOL:automatic]
comment: AO notes: FMA placement dubious
synonym: "nerve of ankle" EXACT [OBOL:automatic]
synonym: "tarsal region nerve" EXACT [UBERON:cjm]
xref: FMA:86901
xref: MA:0000640
is_a: UBERON:0003445 ! foot nerve
relationship: part_of UBERON:0004454
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0004454 ! tarsal region
relationship: part_of UBERON:0004454 ! tarsal region
[Term]
id: UBERON:0003447
name: hand digit nerve
def: "A nerve that is part of a finger [Obol]." [OBOL:automatic]
synonym: "digit of hand nerve" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb nerve" EXACT [OBOL:automatic]
synonym: "digitus manus nerve" EXACT [OBOL:automatic]
synonym: "finger nerve" EXACT [OBOL:automatic]
synonym: "nerve of digit of hand" EXACT [OBOL:automatic]
synonym: "nerve of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of digitus manus" EXACT [OBOL:automatic]
synonym: "nerve of finger" EXACT [OBOL:automatic]
synonym: "nerve of hand digit" EXACT [OBOL:automatic]
synonym: "nerve of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit nerve" EXACT [OBOL:automatic]
xref: MA:0000625
xref: SCTID:181015006
is_a: UBERON:0003448 ! hand nerve
relationship: part_of UBERON:0002389
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit
[Term]
id: UBERON:0003448
name: hand nerve
def: "A nerve that is part of a hand [Obol]." [OBOL:automatic]
synonym: "arm autopod nerve" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "autopod of arm nerve" EXACT [OBOL:automatic]
synonym: "autopod of brachial region nerve" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
synonym: "brachial region autopod nerve" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
synonym: "nerve of arm autopod" EXACT [OBOL:automatic]
synonym: "nerve of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of autopod of arm" EXACT [OBOL:automatic]
synonym: "nerve of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "nerve of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of brachial region autopod" EXACT [OBOL:automatic]
synonym: "nerve of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of hand" EXACT [OBOL:automatic]
synonym: "nerve of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "nerve of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod nerve" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb nerve" EXACT [OBOL:automatic]
xref: MA:0000629
is_a: UBERON:0003441 ! forelimb nerve
relationship: part_of UBERON:0002398
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0003449
name: tail intervertebral disc
def: "A intervertebral disk that is part of a tail [Obol]." [OBOL:automatic]
synonym: "intervertebral disc of post-vent region" EXACT [OBOL:automatic]
synonym: "intervertebral disc of tail" EXACT [OBOL:automatic]
synonym: "intervertebral disk of post-vent region" EXACT [OBOL:automatic]
synonym: "intervertebral disk of tail" EXACT [OBOL:automatic]
synonym: "post-vent region intervertebral disc" EXACT [OBOL:automatic]
synonym: "post-vent region intervertebral disk" EXACT [OBOL:automatic]
synonym: "post-vent region spinal disc" EXACT [OBOL:automatic]
synonym: "spinal disc of post-vent region" EXACT [OBOL:automatic]
synonym: "spinal disc of tail" EXACT [OBOL:automatic]
synonym: "tail intervertebral disk" EXACT [OBOL:automatic]
synonym: "tail spinal disc" EXACT [OBOL:automatic]
xref: EMAPA:19592
xref: MA:0000698
is_a: UBERON:0001066 ! intervertebral disk
relationship: part_of UBERON:0007812
intersection_of: UBERON:0001066 ! intervertebral disk
intersection_of: part_of UBERON:0007812 ! post-anal tail
relationship: part_of UBERON:0007812 ! post-anal tail
[Term]
id: UBERON:0003450
name: upper jaw incisor
def: "A incisor tooth that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "incisor of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "incisor of upper jaw" EXACT [OBOL:automatic]
synonym: "incisor tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "incisor tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch incisor" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch incisor tooth" EXACT [OBOL:automatic]
synonym: "premaxillary tooth" RELATED [UBERON:cjm]
synonym: "upper incisor" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "upper jaw incisor tooth" EXACT [OBOL:automatic]
synonym: "upper primary incisor tooth" NARROW [FMA:84214]
xref: EHDAA2:0002121
xref: EMAPA:17939
xref: FMA:55712
xref: MA:0001601
xref: ncithesaurus:Upper_Jaw_Incisor
xref: SCTID:421578001
is_a: UBERON:0001098 ! incisor tooth
is_a: UBERON:0003267 ! tooth of upper jaw
relationship: part_of UBERON:0001709
intersection_of: UBERON:0001098 ! incisor tooth
intersection_of: part_of UBERON:0001709 ! upper jaw region
relationship: attaches_to UBERON:0002244 ! premaxilla
relationship: part_of UBERON:0001709 ! upper jaw region
[Term]
id: UBERON:0003451
name: lower jaw incisor
def: "A incisor tooth that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "incisor of lower jaw" EXACT [OBOL:automatic]
synonym: "incisor of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "incisor tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "incisor tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower incisor" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "lower jaw incisor tooth" EXACT [OBOL:automatic]
synonym: "lower primary incisor tooth" NARROW [FMA:84215]
synonym: "mandibular incisor" EXACT [BTO:0001942]
synonym: "ventral mandibular arch incisor" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch incisor tooth" EXACT [OBOL:automatic]
xref: BTO:0001942
xref: EHDAA2:0001021
xref: EMAPA:17918
xref: FMA:55713
xref: MA:0001600
xref: ncithesaurus:Lower_Jaw_Incisor
is_a: UBERON:0001098 ! incisor tooth
is_a: UBERON:0003268 ! tooth of lower jaw
relationship: part_of UBERON:0001710
intersection_of: UBERON:0001098 ! incisor tooth
intersection_of: part_of UBERON:0001710 ! lower jaw region
relationship: part_of UBERON:0001710 ! lower jaw region
[Term]
id: UBERON:0003452
name: trabecula carnea cardiac muscle tissue
def: "A portion of cardiac muscle tissue that is part of a trabecula carnea [Obol]." [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "cardiac muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of trabecula carnea" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of trabecula carnea" EXACT [OBOL:automatic]
synonym: "trabecula carnea cardiac muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "trabecula carnea myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of myocardium" EXACT [OBOL:automatic]
xref: FMA:84428
xref: MA:0002833
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002511
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002511 ! trabecula carnea
relationship: part_of UBERON:0002511 ! trabecula carnea
[Term]
id: UBERON:0003453
name: large intestine Peyer's patch
comment: Edtor notes: requires expert attention
synonym: "large intestine Peyer's patch" EXACT [OBOL:automatic]
synonym: "Peyer's patch of large intestine" EXACT [OBOL:automatic]
xref: FMA:15658
xref: MA:0001550
is_a: UBERON:0001211 ! Peyer's patch
relationship: part_of UBERON:0000059
intersection_of: UBERON:0001211 ! Peyer's patch
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
[Term]
id: UBERON:0003454
name: small intestine Peyer's patch
def: "nodular lymphoid structures on the serosal surface of the small intestine." []
synonym: "aggregated lymphoid follicle of small intestine" EXACT [FMA:15054]
synonym: "Peyer's patch" BROAD [FMA:15054]
synonym: "Peyer's patch of small bowel" EXACT [OBOL:automatic]
synonym: "Peyer's patch of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel Peyer's patch" EXACT [OBOL:automatic]
synonym: "small intestine Peyer's patch" EXACT [OBOL:automatic]
xref: FMA:15054
xref: MA:0001557
xref: SCTID:38986009
is_a: UBERON:0001211 ! Peyer's patch
relationship: part_of UBERON:0002108
intersection_of: UBERON:0001211 ! Peyer's patch
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001204 {source="ncithesaurus"} ! mucosa of small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0003455
name: inner renal medulla loop of henle
def: "A loop of Henle that is part of a inner medulla of kidney [Obol]." [OBOL:automatic]
synonym: "Henle loop of inner medulla of kidney" EXACT [OBOL:automatic]
synonym: "Henle loop of inner renal medulla" EXACT [OBOL:automatic]
synonym: "Henle loop of inner zone of medulla of kidney" EXACT [OBOL:automatic]
synonym: "Henle loop of inner zone of renal medulla" EXACT [OBOL:automatic]
synonym: "henle's loop of inner medulla of kidney" EXACT [OBOL:automatic]
synonym: "henle's loop of inner renal medulla" EXACT [OBOL:automatic]
synonym: "henle's loop of inner zone of medulla of kidney" EXACT [OBOL:automatic]
synonym: "henle's loop of inner zone of renal medulla" EXACT [OBOL:automatic]
synonym: "inner medulla of kidney Henle loop" EXACT [OBOL:automatic]
synonym: "inner medulla of kidney henle's loop" EXACT [OBOL:automatic]
synonym: "inner medulla of kidney loop of Henle" EXACT [OBOL:automatic]
synonym: "inner renal medulla Henle loop" EXACT [OBOL:automatic]
synonym: "inner renal medulla henle's loop" EXACT [OBOL:automatic]
synonym: "inner renal medulla loop of Henle" EXACT [OBOL:automatic]
synonym: "inner zone of medulla of kidney Henle loop" EXACT [OBOL:automatic]
synonym: "inner zone of medulla of kidney henle's loop" EXACT [OBOL:automatic]
synonym: "inner zone of medulla of kidney loop of Henle" EXACT [OBOL:automatic]
synonym: "inner zone of renal medulla Henle loop" EXACT [OBOL:automatic]
synonym: "inner zone of renal medulla henle's loop" EXACT [OBOL:automatic]
synonym: "inner zone of renal medulla loop of Henle" EXACT [OBOL:automatic]
synonym: "loop of Henle of inner medulla of kidney" EXACT [OBOL:automatic]
synonym: "loop of Henle of inner renal medulla" EXACT [OBOL:automatic]
synonym: "loop of Henle of inner zone of medulla of kidney" EXACT [OBOL:automatic]
synonym: "loop of Henle of inner zone of renal medulla" EXACT [OBOL:automatic]
xref: MA:0002623
is_a: UBERON:0001288 ! loop of Henle
relationship: part_of UBERON:0001294
intersection_of: UBERON:0001288 ! loop of Henle
intersection_of: part_of UBERON:0001294 ! inner medulla of kidney
relationship: part_of UBERON:0001294 ! inner medulla of kidney
[Term]
id: UBERON:0003456
name: respiratory system lymphatic vessel
def: "A lymphatic vessel that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius lymph vessel" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius lymphatic vessel" EXACT [OBOL:automatic]
synonym: "lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lymph vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "lymphatic vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lymphatic vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system lymph vessel" EXACT [OBOL:automatic]
xref: MA:0001824
is_a: UBERON:0001473 ! lymphatic vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001473 ! lymphatic vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003457
name: head bone
def: "A bone that is part of a head [Obol]." [OBOL:automatic]
synonym: "adult head bone" EXACT [OBOL:automatic]
synonym: "adult head bone organ" EXACT [OBOL:automatic]
synonym: "bone of adult head" EXACT [OBOL:automatic]
synonym: "bone of head" EXACT [OBOL:automatic]
synonym: "bone organ of adult head" EXACT [OBOL:automatic]
synonym: "bone organ of head" EXACT [OBOL:automatic]
synonym: "head bone organ" EXACT [OBOL:automatic]
xref: MA:0000576
xref: SCTID:118646007
is_a: UBERON:0007914 ! head or neck bone
relationship: part_of UBERON:0000033
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003458
name: neck bone
def: "A bone that is part of a neck [Obol]." [OBOL:automatic]
synonym: "bone of neck" EXACT [OBOL:automatic]
synonym: "bone of neck (volume)" EXACT [OBOL:automatic]
synonym: "bone organ of neck" EXACT [OBOL:automatic]
synonym: "bone organ of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) bone" EXACT [OBOL:automatic]
synonym: "neck (volume) bone organ" EXACT [OBOL:automatic]
synonym: "neck bone organ" EXACT [OBOL:automatic]
xref: MA:0000584
xref: OpenCyc:Mx4rvnpJSJwpEbGdrcN5Y29ycA
is_a: UBERON:0007914 ! head or neck bone
relationship: part_of UBERON:0000974
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003459
name: chest bone
def: "A bone that is part of a chest [Obol]." [OBOL:automatic]
synonym: "anterior thoracic region bone" EXACT [OBOL:automatic]
synonym: "anterior thoracic region bone organ" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax bone" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax bone organ" EXACT [OBOL:automatic]
synonym: "bone of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "bone of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "bone of chest" EXACT [OBOL:automatic]
synonym: "bone of front of thorax" EXACT [OBOL:automatic]
synonym: "bone organ of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "bone organ of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "bone organ of chest" EXACT [OBOL:automatic]
synonym: "bone organ of front of thorax" EXACT [OBOL:automatic]
synonym: "chest bone organ" EXACT [OBOL:automatic]
synonym: "front of thorax bone" EXACT [OBOL:automatic]
synonym: "front of thorax bone organ" EXACT [OBOL:automatic]
xref: MA:0000547
is_a: UBERON:0003827 ! thoracic segment bone
is_a: UBERON:0005175 ! chest organ
relationship: part_of UBERON:0001443
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0003460
name: arm bone
def: "A bone that is part of the region of the forelimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia" [UBERON:cjm]
synonym: "arm bone organ" EXACT [OBOL:automatic]
synonym: "bone of arm" EXACT [OBOL:automatic]
synonym: "bone of brachial region" EXACT [OBOL:automatic]
synonym: "bone of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of upper extremity" EXACT [GAID:178]
synonym: "bone organ of arm" EXACT [OBOL:automatic]
synonym: "bone organ of brachial region" EXACT [OBOL:automatic]
synonym: "bone organ of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region bone" EXACT [OBOL:automatic]
synonym: "brachial region bone organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
xref: MA:0000592
xref: OpenCyc:Mx4rwKTXoJwpEbGdrcN5Y29ycA
is_a: UBERON:0008962 ! forelimb bone
relationship: part_of UBERON:0001460
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001440 ! forelimb skeleton
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003461
name: shoulder bone
def: "A bone that is part of a shoulder [Obol]." [OBOL:automatic]
comment: AO notes: this is a forelimb bone in MA, but this would lead to part-disjointness violations. Subtypes are clavicle, scapula, humerus
synonym: "bone of shoulder" EXACT [OBOL:automatic]
synonym: "bone organ of shoulder" EXACT [OBOL:automatic]
synonym: "shoulder bone organ" EXACT [OBOL:automatic]
xref: MA:0000631
is_a: UBERON:0007829 ! pectoral girdle bone
relationship: part_of UBERON:0001467
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle
[Term]
id: UBERON:0003462
name: facial bone
def: "A bone that is part of a facial skeleton [Obol]." [OBOL:automatic]
comment: Editors note: test whether 'facial bone' is an exact synonym
synonym: "bone of facial skeleton" EXACT [OBOL:automatic]
synonym: "bone of viscerocranium" EXACT [OBOL:automatic]
synonym: "facial bone" EXACT [EMAPA:19019]
synonym: "facial skeleton bone" EXACT [OBOL:automatic]
synonym: "viscerocranium bone" EXACT [OBOL:automatic]
xref: EMAPA:19019
xref: MA:0001482
xref: ncithesaurus:Facial_Bone
xref: SCTID:181799005
is_a: UBERON:0003457 ! head bone
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0011156
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0011156 ! facial skeleton
relationship: part_of UBERON:0011156 {source="MA"} ! facial skeleton
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0003463
name: trunk bone
def: "A bone that is part of a trunk [Obol]." [OBOL:automatic]
synonym: "bone of torso" EXACT [OBOL:automatic]
synonym: "bone of trunk" EXACT [OBOL:automatic]
synonym: "bone organ of torso" EXACT [OBOL:automatic]
synonym: "bone organ of trunk" EXACT [OBOL:automatic]
synonym: "torso bone" EXACT [OBOL:automatic]
synonym: "torso bone organ" EXACT [OBOL:automatic]
synonym: "trunk bone organ" EXACT [OBOL:automatic]
xref: MA:0000512
xref: SCTID:427358002
is_a: UBERON:0001474 ! bone
is_a: UBERON:0005177 ! trunk organ
relationship: part_of UBERON:0002100
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003464
name: hindlimb bone
def: "A bone that is part of a hindlimb region. Examples: any foot phalanx, femur. Counter-examples: ischium, pubis (they are part of the pelvic girdle)" [UBERON:cjm]
comment: Note that the MA class is actually bone of pelvic complex; in contrast the NCIT class excludes ilium etc
synonym: "bone of hind limb" EXACT [OBOL:automatic]
synonym: "bone of hindlimb" EXACT [OBOL:automatic]
synonym: "bone of inferior member" EXACT [OBOL:automatic]
synonym: "bone of lower extremity" EXACT [OBOL:automatic]
synonym: "bone organ of hind limb" EXACT [OBOL:automatic]
synonym: "bone organ of hindlimb" EXACT [OBOL:automatic]
synonym: "bone organ of inferior member" EXACT [OBOL:automatic]
synonym: "bone organ of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb bone" EXACT [OBOL:automatic]
synonym: "hind limb bone organ" EXACT [OBOL:automatic]
synonym: "hindlimb bone organ" EXACT [OBOL:automatic]
synonym: "inferior member bone" EXACT [OBOL:automatic]
synonym: "inferior member bone organ" EXACT [OBOL:automatic]
synonym: "lower extremity bone" EXACT [OBOL:automatic]
synonym: "lower extremity bone organ" EXACT [OBOL:automatic]
xref: EFO:0003842
xref: GAID:198
xref: ncithesaurus:Bone_of_the_Lower_Extremity
xref: SCTID:361370006
is_a: UBERON:0002428 ! limb bone
is_a: UBERON:0010742 ! bone of pelvic complex
relationship: part_of UBERON:0002103
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: develops_from UBERON:0010885 ! hindlimb bone cartilaginous condensation
relationship: part_of UBERON:0001441 ! hindlimb skeleton
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003465
name: chondrocranium bone
alt_id: UBERON:0004762
def: "A bone that is part of a chondrocranium [Obol]." [OBOL:automatic]
comment: Made obsolete because it conflated neuro and chondro-cranium; also ZFA:0001544 equivalent was made obsolete.
xref: ZFA:0001544
is_obsolete: true
consider: UBERON:0011164
[Term]
id: UBERON:0003466
name: lower arm bone
def: "A bone that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region bone" EXACT [OBOL:automatic]
synonym: "antebrachial region bone organ" EXACT [OBOL:automatic]
synonym: "arm middle limb segment bone" EXACT [OBOL:automatic]
synonym: "arm middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "arm zeugopod bone" EXACT [OBOL:automatic]
synonym: "arm zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "bone of antebrachial region" EXACT [OBOL:automatic]
synonym: "bone of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of arm zeugopod" EXACT [OBOL:automatic]
synonym: "bone of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "bone of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of lower arm" EXACT [OBOL:automatic]
synonym: "bone of lower segment of arm" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of antebrachial region" EXACT [OBOL:automatic]
synonym: "bone organ of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of arm zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of lower arm" EXACT [OBOL:automatic]
synonym: "bone organ of lower segment of arm" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment bone" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod bone" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "lower arm bone organ" EXACT [OBOL:automatic]
synonym: "lower segment of arm bone" EXACT [OBOL:automatic]
synonym: "lower segment of arm bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment bone" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod bone" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of arm bone" EXACT [OBOL:automatic]
synonym: "zeugopod of arm bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region bone" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
xref: MA:0000598
is_a: UBERON:0003460 ! arm bone
relationship: part_of UBERON:0002386
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0003467
name: sesamoid bone of gastrocnemius
def: "A small sesamoid bone situated behind a condyle of the femur." [https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3470151&group_id=76834, MP:0009005, Wikipedia:Fabella]
synonym: "fabella" RELATED [MA:0001378]
synonym: "gastrocnemius sesamoid bone" EXACT [OBOL:automatic]
synonym: "m. gastrocnemius sesamoid bone" EXACT [OBOL:automatic]
synonym: "sesamoid bone of m. gastrocnemius" EXACT [OBOL:automatic]
xref: galen:Fabella
xref: MA:0001378
xref: SCTID:302749009
is_a: UBERON:0001479 {source="MA"} ! sesamoid bone
is_a: UBERON:0004251 ! lower leg bone
is_a: UBERON:0011141 ! appendicular ossicle
relationship: adjacent_to UBERON:0001388 ! gastrocnemius
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0003468
name: ureteric segment of renal artery
def: "The ureteral branches of renal artery are small branches which supply the ureter." [Wikipedia:Ureteral_branches_of_renal_artery]
synonym: "ureteric artery" BROAD [MA:0002074]
xref: FMA:70491
xref: MA:0002074
xref: SCTID:65376008
is_a: UBERON:0004573 ! systemic artery
relationship: supplies UBERON:0000056
intersection_of: UBERON:0001637 ! artery
intersection_of: supplies UBERON:0000056 ! ureter
relationship: branch_of UBERON:0001184 {source="FMA"} ! renal artery
relationship: part_of UBERON:0001184 {source="FMA"} ! renal artery
relationship: supplies UBERON:0000056 ! ureter
[Term]
id: UBERON:0003469
name: respiratory system artery
def: "An artery that is part of a respiratory system [Obol]." [OBOL:automatic]
xref: MA:0001804
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003643 ! respiratory system arterial blood vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003470
name: artery of upper lip
def: "An artery that is part of a upper lip [Obol]." [OBOL:automatic]
xref: MA:0001917
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003235 ! epithelium of upper jaw
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0006913 ! lip epithelium
relationship: part_of UBERON:0001834
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001834 ! upper lip
relationship: part_of UBERON:0001834 ! upper lip
[Term]
id: UBERON:0003471
name: artery of lower lip
def: "An artery that is part of a lower lip [Obol]." [OBOL:automatic]
xref: MA:0001916
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003236 ! epithelium of lower jaw
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0006913 ! lip epithelium
relationship: part_of UBERON:0001835
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001835 ! lower lip
relationship: part_of UBERON:0001835 ! lower lip
[Term]
id: UBERON:0003472
name: cerebellar artery
def: "An artery that is part of a cerebellum [Obol]." [OBOL:automatic]
xref: EHDAA2:0000228
xref: EHDAA:5290
xref: MA:0001933
xref: ncithesaurus:Cerebellar_Artery
xref: SCTID:278102002
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003499 ! brain blood vessel
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002037
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0003473
name: thoracic cavity artery
def: "An artery that is part of a thoracic cavity[cjm]." [https://sourceforge.net/tracker/index.php?func=detail&aid=3317815&group_id=76834&atid=1205376]
comment: Note that in MA, aorta is classified here - but this is problematic because the abdominal aorta is not in the thoracic cavity
xref: MA:0001902
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003519 ! thoracic cavity blood vessel
relationship: part_of UBERON:0002224
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003474
name: meningeal artery
def: "One of the arteries supplying the meninix[Obol]." [Wikipedia:Meningeal_arteries]
xref: GAID:499
xref: MA:0002001
xref: MESH:A.07.231.114.545
is_a: UBERON:0001637 ! artery
relationship: supplies UBERON:0002360
intersection_of: UBERON:0001637 ! artery
intersection_of: supplies UBERON:0002360 ! meninx
relationship: supplies UBERON:0002360 ! meninx
[Term]
id: UBERON:0003475
name: ureteric vein
def: "A vein that is part of a ureter [Obol]." [OBOL:automatic]
synonym: "ureter vein" EXACT [OBOL:automatic]
synonym: "vein of ureter" EXACT [OBOL:automatic]
xref: MA:0002250
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003520 ! pelvis blood vessel
is_a: UBERON:0006555 ! excretory tube
relationship: part_of UBERON:0000056
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0000056 ! ureter
[Term]
id: UBERON:0003476
name: respiratory system venous blood vessel
def: "A vein that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius vein" EXACT [OBOL:automatic]
synonym: "respiratory system vein" EXACT [OBOL:automatic]
synonym: "vein of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "vein of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001809
xref: MA:0001810
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003504 ! respiratory system blood vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003477
name: vein of upper lip
def: "A vein that is part of a upper lip [Obol]." [OBOL:automatic]
synonym: "upper lip vein" EXACT [OBOL:automatic]
xref: MA:0002255
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001653 ! facial vein
is_a: UBERON:0003235 ! epithelium of upper jaw
is_a: UBERON:0006913 ! lip epithelium
relationship: part_of UBERON:0001834
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001834 ! upper lip
relationship: part_of UBERON:0001834 ! upper lip
[Term]
id: UBERON:0003478
name: vein of lower lip
def: "A vein that is part of a lower lip [Obol]." [OBOL:automatic]
synonym: "lower lip vein" EXACT [OBOL:automatic]
xref: MA:0002253
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003236 ! epithelium of lower jaw
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0006913 ! lip epithelium
is_a: UBERON:0009141 ! craniocervical region vein
relationship: part_of UBERON:0001835
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001835 ! lower lip
relationship: part_of UBERON:0001835 ! lower lip
[Term]
id: UBERON:0003479
name: thoracic cavity vein
def: "A vein that is part of a thoracic cavity [Obol]." [OBOL:automatic]
synonym: "cavity of chest vein" EXACT [OBOL:automatic]
synonym: "cavity of thorax vein" EXACT [OBOL:automatic]
synonym: "chest cavity vein" EXACT [OBOL:automatic]
synonym: "pectoral cavity vein" EXACT [OBOL:automatic]
synonym: "vein of cavity of chest" EXACT [OBOL:automatic]
synonym: "vein of cavity of thorax" EXACT [OBOL:automatic]
synonym: "vein of chest cavity" EXACT [OBOL:automatic]
synonym: "vein of pectoral cavity" EXACT [OBOL:automatic]
synonym: "vein of thoracic cavity" EXACT [OBOL:automatic]
xref: MA:0001903
is_a: UBERON:0003519 ! thoracic cavity blood vessel
is_a: UBERON:0005194 ! thoracic vein
relationship: part_of UBERON:0002224
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003480
name: vein of clitoris
def: "A vein that is part of a clitoris [Obol]." [OBOL:automatic]
synonym: "clitoris vein" EXACT [OBOL:automatic]
xref: MA:0002252
xref: SCTID:360819004
is_a: UBERON:0001638 ! vein
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0002411
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002411 ! clitoris
relationship: part_of UBERON:0002411 ! clitoris
[Term]
id: UBERON:0003481
name: tail vein
def: "A vein that is part of a tail [Obol]." [OBOL:automatic]
synonym: "post-vent region vein" EXACT [OBOL:automatic]
synonym: "vein of post-vent region" EXACT [OBOL:automatic]
synonym: "vein of tail" EXACT [OBOL:automatic]
xref: AAO:0011105
xref: MA:0002233
xref: XAO:0000393
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003524 ! tail blood vessel
relationship: part_of UBERON:0007812
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0007812 ! post-anal tail
relationship: part_of UBERON:0007812 ! post-anal tail
[Term]
id: UBERON:0003482
name: vein of trabecular bone
def: "A portion of vein that is part of a trabecular bone tissue [Obol]." [OBOL:automatic]
synonym: "spongy bone vein" EXACT [OBOL:automatic]
synonym: "trabecular bone tissue vein" EXACT [OBOL:automatic]
synonym: "trabecular bone vein" EXACT [OBOL:automatic]
synonym: "vein of spongy bone" EXACT [OBOL:automatic]
synonym: "vein of trabecular bone tissue" EXACT [OBOL:automatic]
xref: MA:0002254
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0002483
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002483 ! trabecular bone tissue
relationship: part_of UBERON:0002483 ! trabecular bone tissue
[Term]
id: UBERON:0003483
name: thymus lymphoid tissue
def: "A portion of lymphoid tissue that is part of a thymus [Obol]." [OBOL:automatic]
synonym: "lymphatic tissue of thymus" EXACT [OBOL:automatic]
synonym: "lymphatic tissue of thymus gland" EXACT [OBOL:automatic]
synonym: "lymphocytic tissue of thymus" EXACT [OBOL:automatic]
synonym: "lymphocytic tissue of thymus gland" EXACT [OBOL:automatic]
synonym: "lymphoid tissue of thymus" EXACT [OBOL:automatic]
synonym: "lymphoid tissue of thymus gland" EXACT [OBOL:automatic]
synonym: "thymic lymphocytic tissue" EXACT [OBOL:automatic]
synonym: "thymus gland lymphatic tissue" EXACT [OBOL:automatic]
synonym: "thymus gland lymphocytic tissue" EXACT [OBOL:automatic]
synonym: "thymus gland lymphoid tissue" EXACT [OBOL:automatic]
synonym: "thymus lymphatic tissue" EXACT [OBOL:automatic]
synonym: "thymus lymphocytic tissue" EXACT [OBOL:automatic]
xref: MA:0002673
xref: MESH:A.06.407.850
xref: ncithesaurus:Thymic_Lymphoid_Tissue
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001744 ! lymphoid tissue
relationship: part_of UBERON:0002370
intersection_of: UBERON:0001744 ! lymphoid tissue
intersection_of: part_of UBERON:0002370 ! thymus
relationship: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0003484
name: eye sebaceous gland
def: "A sebaceous gland that is part of a camera-type eye [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "camera-type eye sebaceous gland" EXACT [OBOL:automatic]
synonym: "sebaceous gland of camera-type eye" EXACT [OBOL:automatic]
synonym: "sebaceous gland of vertebrate eye" EXACT [OBOL:automatic]
synonym: "vertebrate eye sebaceous gland" EXACT [OBOL:automatic]
xref: MA:0002452
is_a: UBERON:0001821 ! sebaceous gland
is_a: UBERON:0004859 ! eye gland
relationship: part_of UBERON:0000019
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0003485
name: vagina sebaceous gland
def: "A sebaceous gland that is part of a vagina [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "sebaceous gland of vagina" EXACT [OBOL:automatic]
xref: MA:0001732
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001821 ! sebaceous gland
is_a: UBERON:0005398 ! female reproductive gland
relationship: part_of UBERON:0000996
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0003486
name: mammary gland sebaceous gland
def: "A sebaceous gland that is part of a lactiferous gland [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "lactiferous gland sebaceous gland" EXACT [OBOL:automatic]
synonym: "lobe of breast sebaceous gland" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland sebaceous gland" EXACT [OBOL:automatic]
synonym: "sebaceous gland of lactiferous gland" EXACT [OBOL:automatic]
synonym: "sebaceous gland of lobe of breast" EXACT [OBOL:automatic]
synonym: "sebaceous gland of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "sebaceous gland of mammary gland" EXACT [OBOL:automatic]
xref: MA:0000794
is_a: UBERON:0001821 ! sebaceous gland
relationship: part_of UBERON:0001911
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: part_of UBERON:0001911 ! mammary gland
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0003487
name: skin sebaceous gland
def: "the holocrine glands of the dermis that secrete sebum into the hair follicles." [MP:0009535]
subset: organ_slim
synonym: "sebaceous gland of skin" EXACT [OBOL:automatic]
xref: MA:0000149
xref: MESH:A.10.336.827
is_a: UBERON:0001821 ! sebaceous gland
is_a: UBERON:0002419 ! skin gland
relationship: part_of UBERON:0002097
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: part_of UBERON:0002097 ! skin of body
relationship: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0003488
name: abdominal mammary gland
def: "A lactiferous gland that is part of the abdominal region [Obol]." [OBOL:automatic]
comment: Taxon notes: Female mice normally have five pairs of nipples and mammary glands, three in the thoracic and two in the abdominal region. (There is an additional abdominal pair in female rats.) http://www.informatics.jax.org/greenbook/chapters/chapter13.shtml
synonym: "abdomen lactiferous gland" EXACT [OBOL:automatic]
synonym: "abdomen lobe of breast" EXACT [OBOL:automatic]
synonym: "abdomen lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "abdomen mammary gland" EXACT [OBOL:automatic]
synonym: "lactiferous gland of abdomen" EXACT [OBOL:automatic]
synonym: "lobe of breast of abdomen" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland of abdomen" EXACT [OBOL:automatic]
synonym: "mammary gland of abdomen" EXACT [OBOL:automatic]
xref: MA:0000787
xref: SCTID:113191002
xref: SCTID:68037003
is_a: UBERON:0001911 ! mammary gland
is_a: UBERON:0005172 ! abdomen organ
relationship: part_of UBERON:0000916
intersection_of: UBERON:0001911 ! mammary gland
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003489
name: respiratory system capillary endothelium
def: "An endothelium of capillary that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius blood capillary endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius capillary endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius capillary vessel endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of blood capillary" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of capillary" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of capillary vessel" EXACT [OBOL:automatic]
synonym: "blood capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "blood capillary endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "capillary endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "capillary vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "capillary vessel endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "endothelium of blood capillary of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of blood capillary of respiratory system" EXACT [OBOL:automatic]
synonym: "endothelium of capillary of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of capillary of respiratory system" EXACT [OBOL:automatic]
synonym: "endothelium of capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of capillary vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system blood capillary endothelium" EXACT [OBOL:automatic]
synonym: "respiratory system capillary vessel endothelium" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of blood capillary" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of capillary" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of capillary vessel" EXACT [OBOL:automatic]
xref: MA:0001808
is_a: UBERON:0001915 ! endothelium of capillary
is_a: UBERON:0004702 ! respiratory system blood vessel endothelium
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001915 ! endothelium of capillary
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003490
name: respiratory system reticular lamina
def: "A reticular lamina that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius fibroreticular lamina" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius lamina fibroreticularis" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius reticular lamina" EXACT [OBOL:automatic]
synonym: "fibroreticular lamina of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "fibroreticular lamina of respiratory system" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system fibroreticular lamina" EXACT [OBOL:automatic]
synonym: "respiratory system lamina fibroreticularis" EXACT [OBOL:automatic]
synonym: "reticular lamina of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "reticular lamina of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001817
is_a: UBERON:0001967 ! reticular lamina
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001967 ! reticular lamina
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003492
name: bronchus reticular lamina
def: "A reticular lamina that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "bronchi fibroreticular lamina" EXACT [OBOL:automatic]
synonym: "bronchi lamina fibroreticularis" EXACT [OBOL:automatic]
synonym: "bronchi reticular lamina" EXACT [OBOL:automatic]
synonym: "bronchial trunk fibroreticular lamina" EXACT [OBOL:automatic]
synonym: "bronchial trunk lamina fibroreticularis" EXACT [OBOL:automatic]
synonym: "bronchial trunk reticular lamina" EXACT [OBOL:automatic]
synonym: "bronchus fibroreticular lamina" EXACT [OBOL:automatic]
synonym: "bronchus lamina fibroreticularis" EXACT [OBOL:automatic]
synonym: "fibroreticular lamina of bronchi" EXACT [OBOL:automatic]
synonym: "fibroreticular lamina of bronchial trunk" EXACT [OBOL:automatic]
synonym: "fibroreticular lamina of bronchus" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of bronchi" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of bronchial trunk" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of bronchus" EXACT [OBOL:automatic]
synonym: "reticular lamina of bronchi" EXACT [OBOL:automatic]
synonym: "reticular lamina of bronchial trunk" EXACT [OBOL:automatic]
synonym: "reticular lamina of bronchus" EXACT [OBOL:automatic]
xref: MA:0001834
is_a: UBERON:0003490 ! respiratory system reticular lamina
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002185
intersection_of: UBERON:0001967 ! reticular lamina
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0003493
name: trachea reticular lamina
def: "A reticular lamina that is part of a trachea [Obol]." [OBOL:automatic]
synonym: "fibroreticular lamina of cartilaginous trachea" EXACT [OBOL:automatic]
synonym: "fibroreticular lamina of windpipe" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of cartilaginous trachea" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of windpipe" EXACT [OBOL:automatic]
synonym: "reticular lamina of cartilaginous trachea" EXACT [OBOL:automatic]
synonym: "reticular lamina of windpipe" EXACT [OBOL:automatic]
synonym: "windpipe fibroreticular lamina" EXACT [OBOL:automatic]
synonym: "windpipe lamina fibroreticularis" EXACT [OBOL:automatic]
synonym: "windpipe reticular lamina" EXACT [OBOL:automatic]
xref: MA:0001856
is_a: UBERON:0003490 ! respiratory system reticular lamina
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0003126
intersection_of: UBERON:0001967 ! reticular lamina
intersection_of: part_of UBERON:0003126 ! trachea
relationship: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003494
name: respiratory system venule
def: "A venule that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius venule" EXACT [OBOL:automatic]
synonym: "venule of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "venule of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001813
is_a: UBERON:0001979 ! venule
is_a: UBERON:0003504 ! respiratory system blood vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001979 ! venule
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003495
name: respiratory system arteriole
def: "An arteriole that is part of a respiratory system [Obol]." [OBOL:automatic]
xref: MA:0001803
is_a: UBERON:0001980 ! arteriole
is_a: UBERON:0003643 ! respiratory system arterial blood vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001980 ! arteriole
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003496
name: head blood vessel
def: "A blood vessel that is part of a head [Obol]." [OBOL:automatic]
synonym: "adult head blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of adult head" EXACT [OBOL:automatic]
synonym: "blood vessel of head" EXACT [OBOL:automatic]
xref: MA:0000575
xref: SCTID:127865000
is_a: UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0000033
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003497
name: abdomen blood vessel
def: "A blood vessel that is part of an abdomen [Obol]." [OBOL:automatic]
synonym: "blood vessel of abdomen" EXACT [OBOL:automatic]
xref: MA:0000518
is_a: UBERON:0003835 ! abdominal segment blood vessel
relationship: part_of UBERON:0000916
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003498
name: heart blood vessel
def: "A blood vessel that is part of a heart [Obol]." [OBOL:automatic]
synonym: "blood vessel of heart" EXACT [OBOL:automatic]
xref: MA:0002483
is_a: UBERON:0001981 ! blood vessel
is_a: UBERON:0005985 ! coronary vessel
relationship: part_of UBERON:0000948
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0003499
name: brain blood vessel
def: "A blood vessel that is part of a brain [Obol]." [OBOL:automatic]
synonym: "blood vessel of brain" EXACT [OBOL:automatic]
xref: MA:0002769
is_a: UBERON:0001981 ! blood vessel
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0000955
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003500
name: corneal blood vessel
def: "A blood vessel that is part of a cornea [Obol]." [OBOL:automatic]
synonym: "blood vessel of cornea" EXACT [OBOL:automatic]
synonym: "cornea blood vessel" EXACT [OBOL:automatic]
xref: MA:0001241
is_a: UBERON:0001772 ! corneal epithelium
is_a: UBERON:0003496 ! head blood vessel
relationship: part_of UBERON:0000964
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000964 ! cornea
relationship: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0003501
name: retina blood vessel
def: "A blood vessel that is part of a retina [Obol]." [OBOL:automatic]
synonym: "blood vessel of inner layer of eyeball" EXACT [OBOL:automatic]
synonym: "blood vessel of retina" EXACT [OBOL:automatic]
synonym: "blood vessel of tunica interna of eyeball" EXACT [OBOL:automatic]
synonym: "inner layer of eyeball blood vessel" EXACT [OBOL:automatic]
synonym: "retinal blood vessel" EXACT [OBOL:automatic]
synonym: "tunica interna of eyeball blood vessel" EXACT [OBOL:automatic]
xref: GAID:509
xref: MA:0001317
xref: MESH:A.07.231.611
xref: SCTID:280692003
xref: XAO:0004153
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0000966
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000966 ! retina
relationship: part_of UBERON:0000966 ! retina
relationship: part_of UBERON:0004864 ! vasculature of retina
[Term]
id: UBERON:0003502
name: neck blood vessel
def: "A blood vessel that is part of a neck [Obol]." [OBOL:automatic]
synonym: "blood vessel of neck" EXACT [OBOL:automatic]
synonym: "blood vessel of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) blood vessel" EXACT [OBOL:automatic]
xref: MA:0000583
is_a: UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0000974
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003503
name: leg blood vessel
def: "A blood vessel that is part of a leg [Obol]." [OBOL:automatic]
synonym: "blood vessel of leg" EXACT [OBOL:automatic]
xref: MA:0000669
is_a: UBERON:0003516 ! hindlimb blood vessel
relationship: part_of UBERON:0000978
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003504
name: respiratory system blood vessel
def: "A blood vessel that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "blood vessel of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001799
is_a: UBERON:0001981 ! blood vessel
is_a: UBERON:0004807 ! respiratory system epithelium
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003505
name: trachea blood vessel
alt_id: UBERON:0003525
synonym: "blood vessel of trachea" EXACT [OBOL:automatic]
xref: MA:0001852
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000117 ! respiratory tube
is_a: UBERON:0001901 ! epithelium of trachea
is_a: UBERON:0003504 ! respiratory system blood vessel
is_a: UBERON:0003519 ! thoracic cavity blood vessel
relationship: part_of UBERON:0003126
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0003126 ! trachea
relationship: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003506
name: chest blood vessel
def: "A blood vessel that is part of a chest [Obol]." [OBOL:automatic]
synonym: "anterior thoracic region blood vessel" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "blood vessel of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "blood vessel of chest" EXACT [OBOL:automatic]
synonym: "blood vessel of front of thorax" EXACT [OBOL:automatic]
synonym: "front of thorax blood vessel" EXACT [OBOL:automatic]
xref: MA:0000549
is_a: UBERON:0003834 ! thoracic segment blood vessel
relationship: part_of UBERON:0001443
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0003507
name: arm blood vessel
def: "A blood vessel that is part of an arm [Obol]." [OBOL:automatic]
synonym: "blood vessel of arm" EXACT [OBOL:automatic]
synonym: "blood vessel of brachial region" EXACT [OBOL:automatic]
synonym: "blood vessel of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region blood vessel" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
xref: MA:0000591
is_a: UBERON:0003515 ! forelimb blood vessel
relationship: part_of UBERON:0001460
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003508
name: foot digit blood vessel
def: "A blood vessel that is part of a toe [Obol]." [OBOL:automatic]
synonym: "blood vessel of digit of foot" EXACT [OBOL:automatic]
synonym: "blood vessel of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "blood vessel of digitus pedis" EXACT [OBOL:automatic]
synonym: "blood vessel of foot digit" EXACT [OBOL:automatic]
synonym: "blood vessel of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "blood vessel of toe" EXACT [OBOL:automatic]
synonym: "digit of foot blood vessel" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb blood vessel" EXACT [OBOL:automatic]
synonym: "digitus pedis blood vessel" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit blood vessel" EXACT [OBOL:automatic]
synonym: "toe blood vessel" EXACT [OBOL:automatic]
xref: MA:0000645
is_a: UBERON:0003521 ! foot blood vessel
is_a: UBERON:0005226 ! foot digit epithelium
relationship: part_of UBERON:0001466
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit
[Term]
id: UBERON:0003509
name: arterial blood vessel
def: "A blood vessel that is part of the arterial system. Includes artery, arteriole and aorta." [UBERON:cjm]
comment: only in MA - supertype of artery, arteriole, aorta.
xref: MA:0000061
is_a: UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0004572
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0004572 ! arterial system
relationship: part_of UBERON:0004572 ! arterial system
[Term]
id: UBERON:0003510
name: eyelid blood vessel
def: "A blood vessel that is part of a eyelid [Obol]." [OBOL:automatic]
synonym: "blepharon blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of blepharon" EXACT [OBOL:automatic]
synonym: "blood vessel of eyelid" EXACT [OBOL:automatic]
xref: MA:0001250
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001711
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001711 ! eyelid
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0003511
name: iris blood vessel
def: "A blood vessel that is part of a iris [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "blood vessel of iris" EXACT [OBOL:automatic]
xref: MA:0001290
xref: ZFA:0005568
is_a: UBERON:0002506 ! iris epithelium
is_a: UBERON:0003496 ! head blood vessel
relationship: part_of UBERON:0001769
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0004118 ! vasculature of iris
[Term]
id: UBERON:0003512
name: lung blood vessel
def: "A blood vessel that is part of a lung [Obol]." [OBOL:automatic]
synonym: "blood vessel of lung" EXACT [OBOL:automatic]
xref: MA:0002457
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000115 ! lung epithelium
is_a: UBERON:0000117 ! respiratory tube
is_a: UBERON:0003504 ! respiratory system blood vessel
is_a: UBERON:0003519 ! thoracic cavity blood vessel
relationship: part_of UBERON:0002048
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0003513
name: trunk blood vessel
def: "A blood vessel that is part of a trunk [Obol]." [OBOL:automatic]
synonym: "blood vessel of torso" EXACT [OBOL:automatic]
synonym: "blood vessel of trunk" EXACT [OBOL:automatic]
synonym: "torso blood vessel" EXACT [OBOL:automatic]
xref: MA:0000511
is_a: UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0002100
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003514
name: limb blood vessel
def: "A blood vessel that is part of a limb [Obol]." [OBOL:automatic]
synonym: "blood vessel of limb" EXACT [OBOL:automatic]
xref: MA:0000687
is_a: UBERON:0007301 ! limb/fin blood vessel
relationship: part_of UBERON:0002101
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003515
name: forelimb blood vessel
def: "A blood vessel that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of anteriormost limb" EXACT [OBOL:automatic]
synonym: "blood vessel of fore limb" EXACT [OBOL:automatic]
synonym: "blood vessel of forelimb" EXACT [OBOL:automatic]
synonym: "blood vessel of superior member" EXACT [OBOL:automatic]
synonym: "blood vessel of upper extremity" EXACT [OBOL:automatic]
synonym: "fore limb blood vessel" EXACT [OBOL:automatic]
synonym: "superior member blood vessel" EXACT [OBOL:automatic]
synonym: "upper extremity blood vessel" EXACT [OBOL:automatic]
xref: MA:0000611
is_a: UBERON:0003514 ! limb blood vessel
is_a: UBERON:0007300 ! pectoral appendage blood vessel
relationship: part_of UBERON:0002102
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003516
name: hindlimb blood vessel
def: "A blood vessel that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "blood vessel of hind limb" EXACT [OBOL:automatic]
synonym: "blood vessel of hindlimb" EXACT [OBOL:automatic]
synonym: "blood vessel of inferior member" EXACT [OBOL:automatic]
synonym: "blood vessel of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb blood vessel" EXACT [OBOL:automatic]
synonym: "inferior member blood vessel" EXACT [OBOL:automatic]
synonym: "lower extremity blood vessel" EXACT [OBOL:automatic]
xref: MA:0000659
is_a: UBERON:0003514 ! limb blood vessel
relationship: part_of UBERON:0002103
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003517
name: kidney blood vessel
def: "A blood vessel that is part of a kidney [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "blood vessel of kidney" EXACT [OBOL:automatic]
synonym: "renal blood vessel" EXACT [OBOL:automatic]
xref: MA:0001682
xref: TAO:0005306
xref: ZFA:0005306
is_a: UBERON:0003497 ! abdomen blood vessel
is_a: UBERON:0004819 ! kidney epithelium
is_a: UBERON:0006555 ! excretory tube
relationship: part_of UBERON:0002113
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0006544 ! kidney vasculature
[Term]
id: UBERON:0003518
name: main bronchus blood vessel
def: "A blood vessel that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "blood vessel of bronchus principalis" EXACT [OBOL:automatic]
synonym: "blood vessel of main bronchus" EXACT [OBOL:automatic]
synonym: "blood vessel of primary bronchus" EXACT [OBOL:automatic]
synonym: "blood vessel of principal bronchus" EXACT [OBOL:automatic]
synonym: "bronchus principalis blood vessel" EXACT [OBOL:automatic]
synonym: "primary bronchus blood vessel" EXACT [OBOL:automatic]
synonym: "principal bronchus blood vessel" EXACT [OBOL:automatic]
xref: MA:0001844
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000117 ! respiratory tube
is_a: UBERON:0002340 ! epithelium of main bronchus
is_a: UBERON:0003504 ! respiratory system blood vessel
is_a: UBERON:0003519 ! thoracic cavity blood vessel
relationship: part_of UBERON:0002182
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0003519
name: thoracic cavity blood vessel
def: "A blood vessel that is part of a thoracic cavity [Obol]." [OBOL:automatic]
synonym: "blood vessel of cavity of chest" EXACT [OBOL:automatic]
synonym: "blood vessel of cavity of thorax" EXACT [OBOL:automatic]
synonym: "blood vessel of chest cavity" EXACT [OBOL:automatic]
synonym: "blood vessel of pectoral cavity" EXACT [OBOL:automatic]
synonym: "blood vessel of thoracic cavity" EXACT [OBOL:automatic]
synonym: "cavity of chest blood vessel" EXACT [OBOL:automatic]
synonym: "cavity of thorax blood vessel" EXACT [OBOL:automatic]
synonym: "chest cavity blood vessel" EXACT [OBOL:automatic]
synonym: "pectoral cavity blood vessel" EXACT [OBOL:automatic]
xref: MA:0000554
is_a: UBERON:0003834 ! thoracic segment blood vessel
relationship: part_of UBERON:0002224
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003520
name: pelvis blood vessel
def: "A blood vessel that is part of a pelvis [Obol]." [OBOL:automatic]
synonym: "blood vessel of pelvis" EXACT [OBOL:automatic]
xref: MA:0000531
is_a: UBERON:0003835 ! abdominal segment blood vessel
relationship: part_of UBERON:0002355
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003521
name: foot blood vessel
def: "A blood vessel that is part of a foot [Obol]." [OBOL:automatic]
synonym: "autopod of hind limb blood vessel" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb blood vessel" EXACT [OBOL:automatic]
synonym: "autopod of inferior member blood vessel" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "blood vessel of foot" EXACT [OBOL:automatic]
synonym: "blood vessel of hind limb autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of inferior member autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb blood vessel" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb blood vessel" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member blood vessel" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity blood vessel" EXACT [OBOL:automatic]
synonym: "hind limb autopod blood vessel" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "hindlimb autopod blood vessel" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "inferior member autopod blood vessel" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "lower extremity autopod blood vessel" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb blood vessel" EXACT [OBOL:automatic]
xref: MA:0000642
is_a: UBERON:0003516 ! hindlimb blood vessel
relationship: part_of UBERON:0002387
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003522
name: hand digit blood vessel
def: "A blood vessel that is part of a finger [Obol]." [OBOL:automatic]
synonym: "blood vessel of digit of hand" EXACT [OBOL:automatic]
synonym: "blood vessel of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "blood vessel of digitus manus" EXACT [OBOL:automatic]
synonym: "blood vessel of finger" EXACT [OBOL:automatic]
synonym: "blood vessel of hand digit" EXACT [OBOL:automatic]
synonym: "blood vessel of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "digit of hand blood vessel" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
synonym: "digitus manus blood vessel" EXACT [OBOL:automatic]
synonym: "finger blood vessel" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit blood vessel" EXACT [OBOL:automatic]
xref: MA:0000621
is_a: UBERON:0003523 ! hand blood vessel
is_a: UBERON:0005227 ! hand digit epithelium
relationship: part_of UBERON:0002389
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit
[Term]
id: UBERON:0003523
name: hand blood vessel
def: "A blood vessel that is part of a hand [Obol]." [OBOL:automatic]
synonym: "arm autopod blood vessel" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "autopod of arm blood vessel" EXACT [OBOL:automatic]
synonym: "autopod of brachial region blood vessel" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of arm autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of arm" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "blood vessel of brachial region autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "blood vessel of hand" EXACT [OBOL:automatic]
synonym: "blood vessel of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region autopod blood vessel" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm blood vessel" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region blood vessel" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod blood vessel" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
xref: MA:0000618
is_a: UBERON:0003515 ! forelimb blood vessel
relationship: part_of UBERON:0002398
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0003524
name: tail blood vessel
def: "A blood vessel that is part of a tail [Obol]." [OBOL:automatic]
synonym: "blood vessel of post-vent region" EXACT [OBOL:automatic]
synonym: "blood vessel of tail" EXACT [OBOL:automatic]
synonym: "post-vent region blood vessel" EXACT [OBOL:automatic]
xref: MA:0000695
is_a: UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0007812
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0007812 ! post-anal tail
relationship: part_of UBERON:0007812 ! post-anal tail
[Term]
id: UBERON:0003526
name: respiratory system capillary
def: "A capillary that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius blood capillary" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius capillary" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius capillary vessel" EXACT [OBOL:automatic]
synonym: "blood capillary of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "blood capillary of respiratory system" EXACT [OBOL:automatic]
synonym: "capillary of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "capillary of respiratory system" EXACT [OBOL:automatic]
synonym: "capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "capillary vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system blood capillary" EXACT [OBOL:automatic]
synonym: "respiratory system capillary vessel" EXACT [OBOL:automatic]
xref: MA:0001807
is_a: UBERON:0001982 ! capillary
is_a: UBERON:0003504 ! respiratory system blood vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001982 ! capillary
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003527
name: kidney capillary
def: "A capillary that is part of a kidney [Obol]." [OBOL:automatic]
synonym: "blood capillary of kidney" EXACT [OBOL:automatic]
synonym: "capillary of kidney" EXACT [OBOL:automatic]
synonym: "capillary vessel of kidney" EXACT [OBOL:automatic]
synonym: "kidney blood capillary" EXACT [OBOL:automatic]
synonym: "kidney capillary vessel" EXACT [OBOL:automatic]
synonym: "renal capillary" EXACT [OBOL:automatic]
xref: EMAPA:31443
xref: MA:0002586
xref: SCTID:275409003
is_a: UBERON:0001982 ! capillary
is_a: UBERON:0003517 ! kidney blood vessel
relationship: part_of UBERON:0002113
intersection_of: UBERON:0001982 ! capillary
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0003528
name: brain grey matter
def: "A gray matter of neuraxis that is part of a brain [Obol]." [OBOL:automatic]
synonym: "brain gray matter" EXACT [OBOL:automatic]
synonym: "brain gray matter of neuraxis" EXACT [OBOL:automatic]
synonym: "brain grey substance" EXACT [OBOL:automatic]
synonym: "gray matter of brain" EXACT [OBOL:automatic]
synonym: "gray matter of neuraxis of brain" EXACT [OBOL:automatic]
synonym: "grey matter of brain" EXACT [OBOL:automatic]
synonym: "grey substance of brain" EXACT [OBOL:automatic]
xref: MA:0000810
xref: ncithesaurus:Cerebral_Gray_Matter
is_a: UBERON:0002020 ! gray matter of neuraxis
relationship: part_of UBERON:0000955
intersection_of: UBERON:0002020 ! gray matter of neuraxis
intersection_of: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003529
name: respiratory system lymphatic vessel endothelium
def: "An endothelium of lymphatic vessel that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of lymph vessel" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of lymphatic vessel" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius lymph vessel endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius lymphatic vessel endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of lymph vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "endothelium of lymphatic vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of lymphatic vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "lymph vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lymph vessel endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "lymphatic vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lymphatic vessel endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of lymph vessel" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of lymphatic vessel" EXACT [OBOL:automatic]
synonym: "respiratory system lymph vessel endothelium" EXACT [OBOL:automatic]
xref: MA:0001825
is_a: UBERON:0002042 ! endothelium of lymphatic vessel
is_a: UBERON:0004807 ! respiratory system epithelium
relationship: part_of UBERON:0001004
intersection_of: UBERON:0002042 ! endothelium of lymphatic vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0003456 ! respiratory system lymphatic vessel
[Term]
id: UBERON:0003530
name: foot digit skin
def: "A zone of skin that is part of a toe [Obol]." [OBOL:automatic]
synonym: "digit of foot skin" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb skin" EXACT [OBOL:automatic]
synonym: "digitus pedis skin" EXACT [OBOL:automatic]
synonym: "skin of digit of foot" EXACT [OBOL:automatic]
synonym: "skin of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "skin of digitus pedis" EXACT [OBOL:automatic]
synonym: "skin of foot digit" EXACT [OBOL:automatic]
synonym: "skin of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "skin of toe" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit skin" EXACT [OBOL:automatic]
synonym: "toe skin" EXACT [OBOL:automatic]
xref: FMA:37852
xref: MA:0000650
xref: ncithesaurus:Foot_Digit_Skin
xref: SCTID:181530005
is_a: UBERON:0001513 ! skin of foot
relationship: part_of UBERON:0001466
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit
[Term]
id: UBERON:0003531
name: forelimb skin
def: "A zone of skin that is part of a forelimb [Obol]." [OBOL:automatic]
comment: TODO - check free limb vs pectoral complex
synonym: "anteriormost limb skin" EXACT [OBOL:automatic]
synonym: "fore limb skin" EXACT [OBOL:automatic]
synonym: "skin of anteriormost limb" EXACT [OBOL:automatic]
synonym: "skin of fore limb" EXACT [OBOL:automatic]
synonym: "skin of forelimb" EXACT [OBOL:automatic]
synonym: "skin of superior member" EXACT [OBOL:automatic]
synonym: "skin of upper extremity" EXACT [OBOL:automatic]
synonym: "skin of upper limb" EXACT [FMA:23101]
synonym: "superior member skin" EXACT [OBOL:automatic]
synonym: "upper extremity skin" EXACT [OBOL:automatic]
synonym: "upper limb skin" EXACT [FMA:23101]
xref: FMA:23101
xref: MA:0000617
xref: ncithesaurus:Skin_of_the_Upper_Limb_and_Shoulder
xref: SCTID:244130001
is_a: UBERON:0001419 ! skin of limb
relationship: part_of UBERON:0002102
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003532
name: hindlimb skin
def: "A zone of skin that is part of a hindlimb [Obol]." [OBOL:automatic]
comment: TODO - check free limb vs pelvic complex
synonym: "hind limb skin" EXACT [OBOL:automatic]
synonym: "inferior member skin" EXACT [OBOL:automatic]
synonym: "lower extremity skin" EXACT [OBOL:automatic]
synonym: "lower limb skin" EXACT [FMA:23102]
synonym: "skin of hind limb" EXACT [OBOL:automatic]
synonym: "skin of hindlimb" EXACT [OBOL:automatic]
synonym: "skin of inferior member" EXACT [OBOL:automatic]
synonym: "skin of lower extremity" EXACT [OBOL:automatic]
synonym: "skin of lower limb" EXACT [FMA:23102]
xref: FMA:23102
xref: MA:0000665
xref: ncithesaurus:Skin_of_the_Lower_Limb_and_Hip
xref: SCTID:181528008
is_a: UBERON:0001419 ! skin of limb
relationship: part_of UBERON:0002103
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003533
name: hand digit skin
def: "A zone of skin that is part of a finger [Obol]." [OBOL:automatic]
synonym: "digit of hand skin" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb skin" EXACT [OBOL:automatic]
synonym: "digitus manus skin" EXACT [OBOL:automatic]
synonym: "finger skin" EXACT [OBOL:automatic]
synonym: "skin of digit of hand" EXACT [OBOL:automatic]
synonym: "skin of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "skin of digitus manus" EXACT [OBOL:automatic]
synonym: "skin of finger" EXACT [OBOL:automatic]
synonym: "skin of hand digit" EXACT [OBOL:automatic]
synonym: "skin of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit skin" EXACT [OBOL:automatic]
xref: FMA:38304
xref: MA:0000626
xref: ncithesaurus:Hand_Digit_Skin
xref: SCTID:361711001
is_a: UBERON:0001519 ! skin of hand
relationship: part_of UBERON:0002389
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit
[Term]
id: UBERON:0003534
name: tail skin
def: "A zone of skin that is part of a tail [Obol]." [OBOL:automatic]
synonym: "post-vent region skin" EXACT [OBOL:automatic]
synonym: "skin of post-vent region" EXACT [OBOL:automatic]
synonym: "skin of tail" EXACT [OBOL:automatic]
xref: MA:0000700
xref: SCTID:67214004
is_a: UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0007812
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0007812 ! post-anal tail
relationship: part_of UBERON:0007812 ! post-anal tail
[Term]
id: UBERON:0003535
name: vagus X nerve trunk
xref: FMA:6221
xref: MA:0001150
xref: SCTID:280308004
is_a: UBERON:0002464 ! nerve trunk
relationship: part_of UBERON:0001759
intersection_of: UBERON:0002464 ! nerve trunk
intersection_of: part_of UBERON:0001759 ! vagus nerve
relationship: part_of UBERON:0001759 ! vagus nerve
[Term]
id: UBERON:0003536
name: right lung alveolar duct
def: "An alveolar duct that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "alveolar duct of right lung" EXACT [OBOL:automatic]
xref: EMAPA:19185
xref: EMAPA:19187
xref: EMAPA:19189
xref: EMAPA:19191
xref: MA:0001785
xref: ncithesaurus:Right_Lung_Alveolar_Duct
is_a: UBERON:0002173 ! alveolar duct
relationship: part_of UBERON:0002167
intersection_of: UBERON:0002173 ! alveolar duct
intersection_of: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0006526 ! right lung alveolar system
[Term]
id: UBERON:0003537
name: left lung alveolar duct
def: "An alveolar duct that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "alveolar duct of left lung" EXACT [OBOL:automatic]
xref: EMAPA:19183
xref: MA:0001776
xref: ncithesaurus:Left_Lung_Alveolar_Duct
is_a: UBERON:0002173 ! alveolar duct
relationship: part_of UBERON:0002168
intersection_of: UBERON:0002173 ! alveolar duct
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0006525 ! left lung alveolar system
[Term]
id: UBERON:0003538
name: right lung bronchiole
def: "A bronchiole that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "bronchiole of right lung" EXACT [OBOL:automatic]
synonym: "lobular bronchiole of right lung" EXACT [OBOL:automatic]
synonym: "right lung lobular bronchiole" EXACT [OBOL:automatic]
xref: EMAPA:19002
xref: EMAPA:19004
xref: EMAPA:19006
xref: EMAPA:19008
xref: MA:0001787
xref: ncithesaurus:Right_Lung_Bronchiole
xref: SCTID:200089000
is_a: UBERON:0002186 ! bronchiole
relationship: part_of UBERON:0002167
intersection_of: UBERON:0002186 ! bronchiole
intersection_of: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003539
name: left lung bronchiole
def: "A bronchiole that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "bronchiole of left lung" EXACT [OBOL:automatic]
synonym: "left lung lobular bronchiole" EXACT [OBOL:automatic]
synonym: "lobular bronchiole of left lung" EXACT [OBOL:automatic]
xref: EMAPA:19000
xref: MA:0001778
xref: ncithesaurus:Left_Lung_Bronchiole
xref: SCTID:200484003
is_a: UBERON:0002186 ! bronchiole
relationship: part_of UBERON:0002168
intersection_of: UBERON:0002186 ! bronchiole
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003540
name: right lung terminal bronchiole
def: "A terminal bronchiole that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "bronchiolus terminalis of right lung" EXACT [OBOL:automatic]
synonym: "right lung bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "terminal bronchiole of right lung" EXACT [OBOL:automatic]
xref: MA:0001789
xref: ncithesaurus:Right_Lung_Terminal_Bronchiole
is_a: UBERON:0002187 ! terminal bronchiole
is_a: UBERON:0003538 ! right lung bronchiole
relationship: part_of UBERON:0002167
intersection_of: UBERON:0002187 ! terminal bronchiole
intersection_of: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003541
name: left lung terminal bronchiole
def: "A terminal bronchiole that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "bronchiolus terminalis of left lung" EXACT [OBOL:automatic]
synonym: "left lung bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "terminal bronchiole of left lung" EXACT [OBOL:automatic]
xref: MA:0001780
xref: ncithesaurus:Left_Lung_Terminal_Bronchiole
is_a: UBERON:0002187 ! terminal bronchiole
is_a: UBERON:0003539 ! left lung bronchiole
relationship: part_of UBERON:0002168
intersection_of: UBERON:0002187 ! terminal bronchiole
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003542
name: right lung respiratory bronchiole
def: "A respiratory bronchiole that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "bronchiolus respiratorius of right lung" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole of right lung" EXACT [OBOL:automatic]
synonym: "right lung bronchiolus respiratorius" EXACT [OBOL:automatic]
xref: MA:0001788
xref: ncithesaurus:Right_Lung_Respiratory_Bronchiole
is_a: UBERON:0002188 ! respiratory bronchiole
is_a: UBERON:0003538 ! right lung bronchiole
relationship: part_of UBERON:0002167
intersection_of: UBERON:0002188 ! respiratory bronchiole
intersection_of: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003543
name: left lung respiratory bronchiole
def: "A respiratory bronchiole that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "bronchiolus respiratorius of left lung" EXACT [OBOL:automatic]
synonym: "left lung bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole of left lung" EXACT [OBOL:automatic]
xref: MA:0001779
xref: ncithesaurus:Left_Lung_Respiratory_Bronchiole
is_a: UBERON:0002188 ! respiratory bronchiole
is_a: UBERON:0003539 ! left lung bronchiole
relationship: part_of UBERON:0002168
intersection_of: UBERON:0002188 ! respiratory bronchiole
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003544
name: brain white matter
def: "the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026]
synonym: "brain white matter of neuraxis" EXACT [OBOL:automatic]
synonym: "brain white substance" EXACT [OBOL:automatic]
synonym: "white matter of brain" EXACT [OBOL:automatic]
synonym: "white matter of neuraxis of brain" EXACT [OBOL:automatic]
synonym: "white substance of brain" EXACT [OBOL:automatic]
xref: MA:0000820
xref: ncithesaurus:Brain_White_Matter
is_a: UBERON:0002316 ! white matter
relationship: part_of UBERON:0000955
intersection_of: UBERON:0002316 ! white matter
intersection_of: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003545
name: brainstem white matter
comment: obsoleted as definition is unclear. cerebellar peduncle originally classified here but in ABA brainstem and cerbellum are spatially disjoint
is_obsolete: true
[Term]
id: UBERON:0003546
name: distal convoluted tubule macula densa
def: "A macula densa that is part of a distal convoluted tubule [Obol]." [OBOL:automatic]
xref: MA:0001668
is_a: UBERON:0002335 ! macula densa
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001292
intersection_of: UBERON:0002335 ! macula densa
intersection_of: part_of UBERON:0001292 ! distal convoluted tubule
relationship: part_of UBERON:0001292 ! distal convoluted tubule
relationship: part_of UBERON:0001292 {source="MA"} ! distal convoluted tubule
relationship: part_of UBERON:0002335 {source="MA"} ! macula densa
[Term]
id: UBERON:0003547
name: brain meninx
def: "A meninx that is part of a brain [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "brain meninges" EXACT [OBOL:automatic]
synonym: "meninges of brain" EXACT [OBOL:automatic]
synonym: "meninx of brain" EXACT [OBOL:automatic]
xref: EV:0100312
xref: MA:0000813
xref: SCTID:180949007
xref: VHOG:0000013
is_a: UBERON:0002360 ! meninx
relationship: part_of UBERON:0000955
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003548
name: forebrain meninges
def: "A meninx that is part of a forebrain [Obol]." [OBOL:automatic]
synonym: "forebrain meninx" EXACT [OBOL:automatic]
synonym: "meninges of forebrain" EXACT [OBOL:automatic]
synonym: "meninx of forebrain" EXACT [OBOL:automatic]
xref: EMAPA:17764
xref: EMAPA:17774
xref: MA:0000883
is_a: UBERON:0003547 ! brain meninx
relationship: part_of UBERON:0001890
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0001890 ! forebrain
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003549
name: brain pia mater
def: "the fibrous membrane forming the innermost of the three coverings that surrounds the brain within the cranial cavity that is firmly attached to the glial capsule." [MP:0009026]
synonym: "brain pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "pia mater of brain" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of brain" EXACT [OBOL:automatic]
xref: EV:0100315
xref: MA:0000816
xref: ncithesaurus:Brain_Pia_Mater
xref: VHOG:0000470
is_a: UBERON:0002361 ! pia mater
is_a: UBERON:0003547 ! brain meninx
relationship: part_of UBERON:0000955
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003550
name: forebrain pia mater
def: "A pia mater that is part of a forebrain [Obol]." [OBOL:automatic]
synonym: "forebrain pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "pia mater of forebrain" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of forebrain" EXACT [OBOL:automatic]
xref: EMAPA:17767
xref: EMAPA:17777
xref: MA:0000886
is_a: UBERON:0003548 ! forebrain meninges
is_a: UBERON:0003549 ! brain pia mater
relationship: part_of UBERON:0001890
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0001890 ! forebrain
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003551
name: midbrain pia mater
def: "A pia mater that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "midbrain pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "pia mater of midbrain" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of midbrain" EXACT [OBOL:automatic]
xref: EHDAA2:0001175
xref: EMAPA:17794
xref: MA:0001061
xref: RETIRED_EHDAA2:0001110
xref: VHOG:0000467
is_a: UBERON:0003288 ! meninx of midbrain
is_a: UBERON:0003549 ! brain pia mater
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003552
name: telencephalon pia mater
def: "A pia mater that is part of a telencephalon [Obol]." [OBOL:automatic]
synonym: "pia mater of neuraxis of telencephalon" EXACT [OBOL:automatic]
synonym: "pia mater of telencephalon" EXACT [OBOL:automatic]
synonym: "telencephalon pia mater of neuraxis" EXACT [OBOL:automatic]
xref: EHDAA2:0001992
xref: EMAPA:17777
xref: MA:0000982
xref: VHOG:0000476
is_a: UBERON:0003289 ! meninx of telencephalon
is_a: UBERON:0003550 ! forebrain pia mater
relationship: part_of UBERON:0001893
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0003553
name: diencephalon pia mater
def: "A pia mater that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "between brain pia mater" EXACT [OBOL:automatic]
synonym: "between brain pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "diencephalon pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "interbrain pia mater" EXACT [OBOL:automatic]
synonym: "interbrain pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "mature diencephalon pia mater" EXACT [OBOL:automatic]
synonym: "mature diencephalon pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "pia mater of between brain" EXACT [OBOL:automatic]
synonym: "pia mater of diencephalon" EXACT [OBOL:automatic]
synonym: "pia mater of interbrain" EXACT [OBOL:automatic]
synonym: "pia mater of mature diencephalon" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of between brain" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of diencephalon" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of interbrain" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic]
xref: EHDAA2:0000400
xref: EMAPA:17767
xref: MA:0000829
xref: VHOG:0000475
is_a: UBERON:0003290 ! meninx of diencephalon
is_a: UBERON:0003550 ! forebrain pia mater
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003554
name: hindbrain pia mater
def: "A pia mater that is part of a hindbrain [Obol]." [OBOL:automatic]
synonym: "hindbrain pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "pia mater of hindbrain" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of hindbrain" EXACT [OBOL:automatic]
xref: EHDAA2:0000772
xref: EMAPA:17786
xref: MA:0000990
xref: VHOG:0000466
is_a: UBERON:0003291 ! meninx of hindbrain
is_a: UBERON:0003549 ! brain pia mater
relationship: part_of UBERON:0002028
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0002028 ! hindbrain
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0003555
name: spinal cord pia mater
def: "A pia mater that is part of a spinal cord [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "pia mater of neuraxis of spinal cord" EXACT [OBOL:automatic]
synonym: "pia mater of spinal cord" EXACT [OBOL:automatic]
synonym: "spinal cord pia mater of neuraxis" EXACT [OBOL:automatic]
xref: EHDAA2:0001896
xref: EMAPA:17807
xref: MA:0001133
xref: ncithesaurus:Spinal_Cord_Pia_Mater
xref: VHOG:0000468
is_a: UBERON:0002361 ! pia mater
is_a: UBERON:0003292 ! meninx of spinal cord
relationship: part_of UBERON:0002240
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003556
name: forebrain arachnoid mater
def: "An arachnoid mater that is part of a forebrain [Obol]." [OBOL:automatic]
synonym: "arachnoid mater of forebrain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of forebrain" EXACT [OBOL:automatic]
synonym: "arachnoid of forebrain" EXACT [OBOL:automatic]
synonym: "forebrain arachnoid" EXACT [OBOL:automatic]
synonym: "forebrain arachnoid mater of neuraxis" EXACT [OBOL:automatic]
xref: EMAPA:17765
xref: EMAPA:17775
xref: MA:0000884
is_a: UBERON:0002362 ! arachnoid mater
is_a: UBERON:0003548 ! forebrain meninges
relationship: part_of UBERON:0001890
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0001890 ! forebrain
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003557
name: midbrain arachnoid mater
def: "An arachnoid mater that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "arachnoid mater of midbrain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of midbrain" EXACT [OBOL:automatic]
synonym: "arachnoid of midbrain" EXACT [OBOL:automatic]
synonym: "midbrain arachnoid" EXACT [OBOL:automatic]
synonym: "midbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic]
xref: EMAPA:17792
xref: MA:0001059
xref: VHOG:0000233
is_a: UBERON:0002362 ! arachnoid mater
is_a: UBERON:0003288 ! meninx of midbrain
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003558
name: diencephalon arachnoid mater
def: "An arachnoid mater that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "arachnoid mater of between brain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of diencephalon" EXACT [OBOL:automatic]
synonym: "arachnoid mater of interbrain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of mature diencephalon" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of between brain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of diencephalon" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of interbrain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic]
synonym: "arachnoid of between brain" EXACT [OBOL:automatic]
synonym: "arachnoid of diencephalon" EXACT [OBOL:automatic]
synonym: "arachnoid of interbrain" EXACT [OBOL:automatic]
synonym: "arachnoid of mature diencephalon" EXACT [OBOL:automatic]
synonym: "between brain arachnoid" EXACT [OBOL:automatic]
synonym: "between brain arachnoid mater" EXACT [OBOL:automatic]
synonym: "between brain arachnoid mater of neuraxis" EXACT [OBOL:automatic]
synonym: "diencephalon arachnoid" EXACT [OBOL:automatic]
synonym: "diencephalon arachnoid mater of neuraxis" EXACT [OBOL:automatic]
synonym: "interbrain arachnoid" EXACT [OBOL:automatic]
synonym: "interbrain arachnoid mater" EXACT [OBOL:automatic]
synonym: "interbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic]
synonym: "mature diencephalon arachnoid" EXACT [OBOL:automatic]
synonym: "mature diencephalon arachnoid mater" EXACT [OBOL:automatic]
synonym: "mature diencephalon arachnoid mater of neuraxis" EXACT [OBOL:automatic]
xref: EMAPA:17765
xref: MA:0000827
xref: VHOG:0000231
is_a: UBERON:0003290 ! meninx of diencephalon
is_a: UBERON:0003556 ! forebrain arachnoid mater
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003559
name: hindbrain arachnoid mater
def: "An arachnoid mater that is part of a hindbrain [Obol]." [OBOL:automatic]
synonym: "arachnoid mater of hindbrain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of hindbrain" EXACT [OBOL:automatic]
synonym: "arachnoid of hindbrain" EXACT [OBOL:automatic]
synonym: "hindbrain arachnoid" EXACT [OBOL:automatic]
synonym: "hindbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic]
xref: EMAPA:17784
xref: MA:0000988
xref: VHOG:0000236
is_a: UBERON:0002362 ! arachnoid mater
is_a: UBERON:0003291 ! meninx of hindbrain
relationship: part_of UBERON:0002028
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0002028 ! hindbrain
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0003560
name: spinal cord arachnoid mater
def: "An arachnoid mater that is part of a spinal cord [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "arachnoid mater of neuraxis of spinal cord" EXACT [OBOL:automatic]
synonym: "arachnoid mater of spinal cord" EXACT [OBOL:automatic]
synonym: "arachnoid of spinal cord" EXACT [OBOL:automatic]
synonym: "spinal cord arachnoid" EXACT [OBOL:automatic]
synonym: "spinal cord arachnoid mater of neuraxis" EXACT [OBOL:automatic]
xref: EMAPA:17805
xref: MA:0001131
xref: VHOG:0000234
is_a: UBERON:0002362 ! arachnoid mater
is_a: UBERON:0003292 ! meninx of spinal cord
relationship: part_of UBERON:0002240
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003561
name: forebrain dura mater
synonym: "dura mater of forebrain" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of forebrain" EXACT [OBOL:automatic]
synonym: "forebrain dura mater of neuraxis" EXACT [OBOL:automatic]
xref: EMAPA:17766
xref: MA:0000885
is_a: UBERON:0002092 ! brain dura mater
is_a: UBERON:0003548 ! forebrain meninges
relationship: part_of UBERON:0001890
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0001890 ! forebrain
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003562
name: midbrain dura mater
def: "A dura mater that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "dura mater of midbrain" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of midbrain" EXACT [OBOL:automatic]
synonym: "midbrain dura mater of neuraxis" EXACT [OBOL:automatic]
xref: EMAPA:17793
xref: MA:0001060
xref: VHOG:0000410
is_a: UBERON:0002092 ! brain dura mater
is_a: UBERON:0003288 ! meninx of midbrain
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003563
name: telencephalon dura mater
def: "A dura mater that is part of a telencephalon [Obol]." [OBOL:automatic]
synonym: "dura mater of neuraxis of telencephalon" EXACT [OBOL:automatic]
synonym: "dura mater of telencephalon" EXACT [OBOL:automatic]
synonym: "telencephalon dura mater of neuraxis" EXACT [OBOL:automatic]
xref: MA:0000981
is_a: UBERON:0003289 ! meninx of telencephalon
is_a: UBERON:0003561 ! forebrain dura mater
relationship: part_of UBERON:0001893
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0003564
name: diencephalon dura mater
def: "A dura mater that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "between brain dura mater" EXACT [OBOL:automatic]
synonym: "between brain dura mater of neuraxis" EXACT [OBOL:automatic]
synonym: "diencephalon dura mater of neuraxis" EXACT [OBOL:automatic]
synonym: "dura mater of between brain" EXACT [OBOL:automatic]
synonym: "dura mater of diencephalon" EXACT [OBOL:automatic]
synonym: "dura mater of interbrain" EXACT [OBOL:automatic]
synonym: "dura mater of mature diencephalon" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of between brain" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of diencephalon" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of interbrain" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic]
synonym: "interbrain dura mater" EXACT [OBOL:automatic]
synonym: "interbrain dura mater of neuraxis" EXACT [OBOL:automatic]
synonym: "mature diencephalon dura mater" EXACT [OBOL:automatic]
synonym: "mature diencephalon dura mater of neuraxis" EXACT [OBOL:automatic]
xref: EMAPA:17766
xref: MA:0000828
xref: VHOG:0000258
is_a: UBERON:0003290 ! meninx of diencephalon
is_a: UBERON:0003561 ! forebrain dura mater
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003565
name: hindbrain dura mater
def: "A dura mater that is part of a hindbrain [Obol]." [OBOL:automatic]
synonym: "dura mater of hindbrain" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of hindbrain" EXACT [OBOL:automatic]
synonym: "hindbrain dura mater of neuraxis" EXACT [OBOL:automatic]
xref: EMAPA:17785
xref: MA:0000989
xref: VHOG:0000409
is_a: UBERON:0002092 ! brain dura mater
is_a: UBERON:0003291 ! meninx of hindbrain
relationship: part_of UBERON:0002028
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0002028 ! hindbrain
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0003566
name: head connective tissue
def: "A portion of connective tissue that is part of a head [Obol]." [OBOL:automatic]
synonym: "adult head connective tissue" EXACT [OBOL:automatic]
synonym: "adult head portion of connective tissue" EXACT [OBOL:automatic]
synonym: "adult head textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of adult head" EXACT [OBOL:automatic]
synonym: "connective tissue of head" EXACT [OBOL:automatic]
synonym: "head portion of connective tissue" EXACT [OBOL:automatic]
synonym: "head textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of adult head" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of head" EXACT [OBOL:automatic]
synonym: "textus connectivus of adult head" EXACT [OBOL:automatic]
synonym: "textus connectivus of head" EXACT [OBOL:automatic]
xref: MA:0000577
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0000033
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003567
name: abdomen connective tissue
def: "A portion of connective tissue that is part of an abdomen [Obol]." [OBOL:automatic]
synonym: "abdomen portion of connective tissue" EXACT [OBOL:automatic]
synonym: "abdomen textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of abdomen" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of abdomen" EXACT [OBOL:automatic]
synonym: "textus connectivus of abdomen" EXACT [OBOL:automatic]
xref: MA:0000519
is_a: UBERON:0003838 ! abdominal segment connective tissue
relationship: part_of UBERON:0000916
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003568
name: neck connective tissue
def: "A portion of connective tissue that is part of a neck [Obol]." [OBOL:automatic]
synonym: "connective tissue of neck" EXACT [OBOL:automatic]
synonym: "connective tissue of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) connective tissue" EXACT [OBOL:automatic]
synonym: "neck (volume) portion of connective tissue" EXACT [OBOL:automatic]
synonym: "neck (volume) textus connectivus" EXACT [OBOL:automatic]
synonym: "neck portion of connective tissue" EXACT [OBOL:automatic]
synonym: "neck textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of neck" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of neck (volume)" EXACT [OBOL:automatic]
synonym: "textus connectivus of neck" EXACT [OBOL:automatic]
synonym: "textus connectivus of neck (volume)" EXACT [OBOL:automatic]
xref: MA:0000585
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0000974
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003569
name: leg connective tissue
def: "A portion of connective tissue that is part of a leg [Obol]." [OBOL:automatic]
synonym: "connective tissue of leg" EXACT [OBOL:automatic]
synonym: "leg portion of connective tissue" EXACT [OBOL:automatic]
synonym: "leg textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of leg" EXACT [OBOL:automatic]
synonym: "textus connectivus of leg" EXACT [OBOL:automatic]
xref: MA:0000671
is_a: UBERON:0003589 ! hindlimb connective tissue
relationship: part_of UBERON:0000978
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003570
name: respiratory system connective tissue
def: "A portion of connective tissue that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius connective tissue" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius portion of connective tissue" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "connective tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system portion of connective tissue" EXACT [OBOL:automatic]
synonym: "respiratory system textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "textus connectivus of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001814
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0001004
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003571
name: trachea connective tissue
synonym: "connective tissue of trachea" EXACT [OBOL:automatic]
synonym: "connective tissue of windpipe" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of trachea" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of windpipe" EXACT [OBOL:automatic]
synonym: "textus connectivus of trachea" EXACT [OBOL:automatic]
synonym: "textus connectivus of windpipe" EXACT [OBOL:automatic]
synonym: "trachea portion of connective tissue" EXACT [OBOL:automatic]
synonym: "trachea textus connectivus" EXACT [OBOL:automatic]
synonym: "windpipe connective tissue" EXACT [OBOL:automatic]
synonym: "windpipe portion of connective tissue" EXACT [OBOL:automatic]
synonym: "windpipe textus connectivus" EXACT [OBOL:automatic]
xref: MA:0001853
is_a: UBERON:0003580 ! lower respiratory tract connective tissue
is_a: UBERON:0003593 ! thoracic cavity connective tissue
relationship: part_of UBERON:0003126
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0003126 ! trachea
relationship: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003572
name: chest connective tissue
def: "A portion of connective tissue that is part of a chest [Obol]." [OBOL:automatic]
synonym: "anterior thoracic region connective tissue" EXACT [OBOL:automatic]
synonym: "anterior thoracic region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "anterior thoracic region textus connectivus" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax connective tissue" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax portion of connective tissue" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax textus connectivus" EXACT [OBOL:automatic]
synonym: "chest portion of connective tissue" EXACT [OBOL:automatic]
synonym: "chest textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "connective tissue of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "connective tissue of chest" EXACT [OBOL:automatic]
synonym: "connective tissue of front of thorax" EXACT [OBOL:automatic]
synonym: "front of thorax connective tissue" EXACT [OBOL:automatic]
synonym: "front of thorax portion of connective tissue" EXACT [OBOL:automatic]
synonym: "front of thorax textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of chest" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of front of thorax" EXACT [OBOL:automatic]
synonym: "textus connectivus of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "textus connectivus of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "textus connectivus of chest" EXACT [OBOL:automatic]
synonym: "textus connectivus of front of thorax" EXACT [OBOL:automatic]
xref: MA:0000550
is_a: UBERON:0003837 ! thoracic segment connective tissue
relationship: part_of UBERON:0001443
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0003573
name: arm connective tissue
def: "A portion of connective tissue that is part of an arm [Obol]." [OBOL:automatic]
synonym: "arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb" EXACT [OBOL:automatic]
xref: MA:0000593
is_a: UBERON:0003588 ! forelimb connective tissue
relationship: part_of UBERON:0001460
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003574
name: elbow connective tissue
def: "A portion of connective tissue that is part of a elbow [Obol]." [OBOL:automatic]
synonym: "connective tissue of cubital region" EXACT [OBOL:automatic]
synonym: "connective tissue of elbow" EXACT [OBOL:automatic]
synonym: "cubital region connective tissue" EXACT [OBOL:automatic]
synonym: "cubital region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "cubital region textus connectivus" EXACT [OBOL:automatic]
synonym: "elbow portion of connective tissue" EXACT [OBOL:automatic]
synonym: "elbow textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of cubital region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of elbow" EXACT [OBOL:automatic]
synonym: "textus connectivus of cubital region" EXACT [OBOL:automatic]
synonym: "textus connectivus of elbow" EXACT [OBOL:automatic]
xref: MA:0000609
is_a: UBERON:0003573 ! arm connective tissue
relationship: part_of UBERON:0001461
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001461 ! elbow
relationship: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0003575
name: wrist connective tissue
def: "A portion of connective tissue that is part of a wrist [Obol]." [OBOL:automatic]
synonym: "carpal region connective tissue" EXACT [OBOL:automatic]
synonym: "carpal region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "carpal region textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of carpal region" EXACT [OBOL:automatic]
synonym: "connective tissue of wrist" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of carpal region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of wrist" EXACT [OBOL:automatic]
synonym: "textus connectivus of carpal region" EXACT [OBOL:automatic]
synonym: "textus connectivus of wrist" EXACT [OBOL:automatic]
synonym: "wrist portion of connective tissue" EXACT [OBOL:automatic]
synonym: "wrist textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000636
is_a: UBERON:0003598 ! hand connective tissue
relationship: part_of UBERON:0004452
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0004452 ! carpal region
relationship: part_of UBERON:0004452 ! carpal region
[Term]
id: UBERON:0003576
name: hip connective tissue
def: "A portion of connective tissue that is part of a hip [Obol]." [OBOL:automatic]
synonym: "connective tissue of hip" EXACT [OBOL:automatic]
synonym: "connective tissue of hip region" EXACT [OBOL:automatic]
synonym: "connective tissue of regio coxae" EXACT [OBOL:automatic]
synonym: "hip portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hip region connective tissue" EXACT [OBOL:automatic]
synonym: "hip region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hip region textus connectivus" EXACT [OBOL:automatic]
synonym: "hip textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hip" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hip region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of regio coxae" EXACT [OBOL:automatic]
synonym: "regio coxae connective tissue" EXACT [OBOL:automatic]
synonym: "regio coxae portion of connective tissue" EXACT [OBOL:automatic]
synonym: "regio coxae textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of hip" EXACT [OBOL:automatic]
synonym: "textus connectivus of hip region" EXACT [OBOL:automatic]
synonym: "textus connectivus of regio coxae" EXACT [OBOL:automatic]
xref: MA:0000656
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0001464
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0003577
name: knee connective tissue
def: "A portion of connective tissue that is part of a knee [Obol]." [OBOL:automatic]
synonym: "connective tissue of knee" EXACT [OBOL:automatic]
synonym: "knee portion of connective tissue" EXACT [OBOL:automatic]
synonym: "knee textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of knee" EXACT [OBOL:automatic]
synonym: "textus connectivus of knee" EXACT [OBOL:automatic]
xref: MA:0000667
is_a: UBERON:0003569 ! leg connective tissue
relationship: part_of UBERON:0001465
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001465 ! knee
relationship: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0003578
name: foot digit connective tissue
def: "A portion of connective tissue that is part of a toe [Obol]." [OBOL:automatic]
synonym: "connective tissue of digit of foot" EXACT [OBOL:automatic]
synonym: "connective tissue of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "connective tissue of digitus pedis" EXACT [OBOL:automatic]
synonym: "connective tissue of foot digit" EXACT [OBOL:automatic]
synonym: "connective tissue of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "connective tissue of toe" EXACT [OBOL:automatic]
synonym: "digit of foot connective tissue" EXACT [OBOL:automatic]
synonym: "digit of foot portion of connective tissue" EXACT [OBOL:automatic]
synonym: "digit of foot textus connectivus" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb connective tissue" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb textus connectivus" EXACT [OBOL:automatic]
synonym: "digitus pedis connective tissue" EXACT [OBOL:automatic]
synonym: "digitus pedis portion of connective tissue" EXACT [OBOL:automatic]
synonym: "digitus pedis textus connectivus" EXACT [OBOL:automatic]
synonym: "foot digit portion of connective tissue" EXACT [OBOL:automatic]
synonym: "foot digit textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of digit of foot" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of digitus pedis" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of foot digit" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of toe" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit portion of connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of digit of foot" EXACT [OBOL:automatic]
synonym: "textus connectivus of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of digitus pedis" EXACT [OBOL:automatic]
synonym: "textus connectivus of foot digit" EXACT [OBOL:automatic]
synonym: "textus connectivus of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "textus connectivus of toe" EXACT [OBOL:automatic]
synonym: "toe connective tissue" EXACT [OBOL:automatic]
synonym: "toe portion of connective tissue" EXACT [OBOL:automatic]
synonym: "toe textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000647
is_a: UBERON:0003595 ! foot connective tissue
relationship: part_of UBERON:0001466
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit
[Term]
id: UBERON:0003579
name: shoulder connective tissue
def: "A portion of connective tissue that is part of a shoulder [Obol]." [OBOL:automatic]
synonym: "connective tissue of shoulder" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of shoulder" EXACT [OBOL:automatic]
synonym: "shoulder portion of connective tissue" EXACT [OBOL:automatic]
synonym: "shoulder textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of shoulder" EXACT [OBOL:automatic]
xref: MA:0000632
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0001467
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003580
name: lower respiratory tract connective tissue
def: "A portion of connective tissue that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
synonym: "connective tissue of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "lower respiratory tract portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower respiratory tract textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower respiratory tract" EXACT [OBOL:automatic]
xref: MA:0002409
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001558
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001558 ! lower respiratory tract
relationship: part_of UBERON:0001558 ! lower respiratory tract
[Term]
id: UBERON:0003581
name: eyelid connective tissue
def: "A portion of connective tissue that is part of a eyelid [Obol]." [OBOL:automatic]
synonym: "blepharon connective tissue" EXACT [OBOL:automatic]
synonym: "blepharon portion of connective tissue" EXACT [OBOL:automatic]
synonym: "blepharon textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of blepharon" EXACT [OBOL:automatic]
synonym: "connective tissue of eyelid" EXACT [OBOL:automatic]
synonym: "eyelid portion of connective tissue" EXACT [OBOL:automatic]
synonym: "eyelid textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of blepharon" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of eyelid" EXACT [OBOL:automatic]
synonym: "textus connectivus of blepharon" EXACT [OBOL:automatic]
synonym: "textus connectivus of eyelid" EXACT [OBOL:automatic]
xref: MA:0001251
xref: ncithesaurus:Eyelid_Connective_Tissue
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001711
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001711 ! eyelid
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0003582
name: nasopharynx connective tissue
def: "A portion of connective tissue that is part of a nasopharynx [Obol]." [OBOL:automatic]
synonym: "connective tissue of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "connective tissue of nasopharynx" EXACT [OBOL:automatic]
synonym: "connective tissue of rhinopharynx" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx connective tissue" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx portion of connective tissue" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx textus connectivus" EXACT [OBOL:automatic]
synonym: "nasopharynx portion of connective tissue" EXACT [OBOL:automatic]
synonym: "nasopharynx textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of nasopharynx" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of rhinopharynx" EXACT [OBOL:automatic]
synonym: "rhinopharynx connective tissue" EXACT [OBOL:automatic]
synonym: "rhinopharynx portion of connective tissue" EXACT [OBOL:automatic]
synonym: "rhinopharynx textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "textus connectivus of nasopharynx" EXACT [OBOL:automatic]
synonym: "textus connectivus of rhinopharynx" EXACT [OBOL:automatic]
xref: MA:0001864
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001728
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001728 ! nasopharynx
relationship: part_of UBERON:0001728 ! nasopharynx
[Term]
id: UBERON:0003583
name: larynx connective tissue
def: "A portion of connective tissue that is part of a larynx [Obol]." [OBOL:automatic]
synonym: "connective tissue of larynx" EXACT [OBOL:automatic]
synonym: "larynx portion of connective tissue" EXACT [OBOL:automatic]
synonym: "larynx textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of larynx" EXACT [OBOL:automatic]
synonym: "textus connectivus of larynx" EXACT [OBOL:automatic]
xref: MA:0001754
xref: ncithesaurus:Laryngeal_Connective_Tissue
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001737
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0003584
name: mammary gland connective tissue
def: "the fibrous supportive tissue of the mammary gland." [MP:0009507]
synonym: "connective tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "connective tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "connective tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "connective tissue of mammary gland" EXACT [OBOL:automatic]
synonym: "lactiferous gland connective tissue" EXACT [OBOL:automatic]
synonym: "lactiferous gland portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lactiferous gland textus connectivus" EXACT [OBOL:automatic]
synonym: "lobe of breast connective tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast textus connectivus" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland connective tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland textus connectivus" EXACT [OBOL:automatic]
synonym: "mammary gland portion of connective tissue" EXACT [OBOL:automatic]
synonym: "mammary gland textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of mammary gland" EXACT [OBOL:automatic]
synonym: "textus connectivus of lactiferous gland" EXACT [OBOL:automatic]
synonym: "textus connectivus of lobe of breast" EXACT [OBOL:automatic]
synonym: "textus connectivus of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "textus connectivus of mammary gland" EXACT [OBOL:automatic]
xref: FMA:74479
xref: MA:0002897
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001911
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001911 ! mammary gland
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0003585
name: dermis connective tissue
def: "A portion of connective tissue that is part of a dermis [Obol]." [OBOL:automatic]
synonym: "connective tissue of dermis" EXACT [OBOL:automatic]
synonym: "dermis portion of connective tissue" EXACT [OBOL:automatic]
synonym: "dermis textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of dermis" EXACT [OBOL:automatic]
synonym: "textus connectivus of dermis" EXACT [OBOL:automatic]
xref: MA:0000799
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002067
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002067 ! dermis
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0003586
name: trunk connective tissue
def: "A portion of connective tissue that is part of a trunk [Obol]." [OBOL:automatic]
synonym: "connective tissue of torso" EXACT [OBOL:automatic]
synonym: "connective tissue of trunk" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of torso" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of trunk" EXACT [OBOL:automatic]
synonym: "textus connectivus of torso" EXACT [OBOL:automatic]
synonym: "textus connectivus of trunk" EXACT [OBOL:automatic]
synonym: "torso connective tissue" EXACT [OBOL:automatic]
synonym: "torso portion of connective tissue" EXACT [OBOL:automatic]
synonym: "torso textus connectivus" EXACT [OBOL:automatic]
synonym: "trunk portion of connective tissue" EXACT [OBOL:automatic]
synonym: "trunk textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000513
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0002100
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003587
name: limb connective tissue
def: "A portion of connective tissue that is part of a limb [Obol]." [OBOL:automatic]
synonym: "connective tissue of limb" EXACT [OBOL:automatic]
synonym: "limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "limb textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of limb" EXACT [OBOL:automatic]
xref: MA:0000689
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002101
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003588
name: forelimb connective tissue
def: "A portion of connective tissue that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb connective tissue" EXACT [OBOL:automatic]
synonym: "anteriormost limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "anteriormost limb textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of anteriormost limb" EXACT [OBOL:automatic]
synonym: "connective tissue of fore limb" EXACT [OBOL:automatic]
synonym: "connective tissue of forelimb" EXACT [OBOL:automatic]
synonym: "connective tissue of superior member" EXACT [OBOL:automatic]
synonym: "connective tissue of upper extremity" EXACT [OBOL:automatic]
synonym: "fore limb connective tissue" EXACT [OBOL:automatic]
synonym: "fore limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "fore limb textus connectivus" EXACT [OBOL:automatic]
synonym: "forelimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "forelimb textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of anteriormost limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of fore limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of forelimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of superior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member connective tissue" EXACT [OBOL:automatic]
synonym: "superior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "superior member textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of anteriormost limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of fore limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of forelimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of superior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of upper extremity" EXACT [OBOL:automatic]
synonym: "upper extremity connective tissue" EXACT [OBOL:automatic]
synonym: "upper extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "upper extremity textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000613
is_a: UBERON:0003587 ! limb connective tissue
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003589
name: hindlimb connective tissue
def: "A portion of connective tissue that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "connective tissue of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity" EXACT [OBOL:automatic]
xref: MA:0000661
is_a: UBERON:0003587 ! limb connective tissue
relationship: part_of UBERON:0002103
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003590
name: main bronchus connective tissue
def: "A portion of connective tissue that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "bronchus principalis connective tissue" EXACT [OBOL:automatic]
synonym: "bronchus principalis portion of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchus principalis textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of bronchus principalis" EXACT [OBOL:automatic]
synonym: "connective tissue of main bronchus" EXACT [OBOL:automatic]
synonym: "connective tissue of primary bronchus" EXACT [OBOL:automatic]
synonym: "connective tissue of principal bronchus" EXACT [OBOL:automatic]
synonym: "main bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "main bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of bronchus principalis" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of main bronchus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of primary bronchus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of principal bronchus" EXACT [OBOL:automatic]
synonym: "primary bronchus connective tissue" EXACT [OBOL:automatic]
synonym: "primary bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "primary bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "principal bronchus connective tissue" EXACT [OBOL:automatic]
synonym: "principal bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "principal bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of bronchus principalis" EXACT [OBOL:automatic]
synonym: "textus connectivus of main bronchus" EXACT [OBOL:automatic]
synonym: "textus connectivus of primary bronchus" EXACT [OBOL:automatic]
synonym: "textus connectivus of principal bronchus" EXACT [OBOL:automatic]
xref: MA:0001845
is_a: UBERON:0003592 ! bronchus connective tissue
relationship: part_of UBERON:0002182
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0003591
name: lobar bronchus connective tissue
def: "A portion of connective tissue that is part of a lobar bronchus [Obol]." [OBOL:automatic]
synonym: "connective tissue of lobar bronchus" EXACT [OBOL:automatic]
synonym: "connective tissue of secondary bronchus" EXACT [OBOL:automatic]
synonym: "lobar bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lobar bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lobar bronchus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of secondary bronchus" EXACT [OBOL:automatic]
synonym: "secondary bronchus connective tissue" EXACT [OBOL:automatic]
synonym: "secondary bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "secondary bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of lobar bronchus" EXACT [OBOL:automatic]
synonym: "textus connectivus of secondary bronchus" EXACT [OBOL:automatic]
xref: MA:0001841
is_a: UBERON:0000114 ! lung connective tissue
is_a: UBERON:0003592 ! bronchus connective tissue
relationship: part_of UBERON:0002183
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002183 ! lobar bronchus
relationship: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0003592
name: bronchus connective tissue
def: "A portion of connective tissue that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "bronchi connective tissue" EXACT [OBOL:automatic]
synonym: "bronchi portion of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchi textus connectivus" EXACT [OBOL:automatic]
synonym: "bronchial trunk connective tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk portion of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk textus connectivus" EXACT [OBOL:automatic]
synonym: "bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of bronchi" EXACT [OBOL:automatic]
synonym: "connective tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "connective tissue of bronchus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of bronchi" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of bronchus" EXACT [OBOL:automatic]
synonym: "textus connectivus of bronchi" EXACT [OBOL:automatic]
synonym: "textus connectivus of bronchial trunk" EXACT [OBOL:automatic]
synonym: "textus connectivus of bronchus" EXACT [OBOL:automatic]
xref: MA:0001831
xref: ncithesaurus:Bronchus_Connective_Tissue
is_a: UBERON:0003580 ! lower respiratory tract connective tissue
is_a: UBERON:0003593 ! thoracic cavity connective tissue
relationship: part_of UBERON:0002185
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0003593
name: thoracic cavity connective tissue
def: "A portion of connective tissue that is part of a thoracic cavity [Obol]." [OBOL:automatic]
synonym: "cavity of chest connective tissue" EXACT [OBOL:automatic]
synonym: "cavity of chest portion of connective tissue" EXACT [OBOL:automatic]
synonym: "cavity of chest textus connectivus" EXACT [OBOL:automatic]
synonym: "cavity of thorax connective tissue" EXACT [OBOL:automatic]
synonym: "cavity of thorax portion of connective tissue" EXACT [OBOL:automatic]
synonym: "cavity of thorax textus connectivus" EXACT [OBOL:automatic]
synonym: "chest cavity connective tissue" EXACT [OBOL:automatic]
synonym: "chest cavity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "chest cavity textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of cavity of chest" EXACT [OBOL:automatic]
synonym: "connective tissue of cavity of thorax" EXACT [OBOL:automatic]
synonym: "connective tissue of chest cavity" EXACT [OBOL:automatic]
synonym: "connective tissue of pectoral cavity" EXACT [OBOL:automatic]
synonym: "connective tissue of thoracic cavity" EXACT [OBOL:automatic]
synonym: "pectoral cavity connective tissue" EXACT [OBOL:automatic]
synonym: "pectoral cavity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "pectoral cavity textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of cavity of chest" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of cavity of thorax" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of chest cavity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of pectoral cavity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of thoracic cavity" EXACT [OBOL:automatic]
synonym: "textus connectivus of cavity of chest" EXACT [OBOL:automatic]
synonym: "textus connectivus of cavity of thorax" EXACT [OBOL:automatic]
synonym: "textus connectivus of chest cavity" EXACT [OBOL:automatic]
synonym: "textus connectivus of pectoral cavity" EXACT [OBOL:automatic]
synonym: "textus connectivus of thoracic cavity" EXACT [OBOL:automatic]
synonym: "thoracic cavity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "thoracic cavity textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000555
is_a: UBERON:0003837 ! thoracic segment connective tissue
relationship: part_of UBERON:0002224
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003594
name: pelvis connective tissue
def: "A portion of connective tissue that is part of a pelvis [Obol]." [OBOL:automatic]
synonym: "connective tissue of pelvis" EXACT [OBOL:automatic]
synonym: "pelvis portion of connective tissue" EXACT [OBOL:automatic]
synonym: "pelvis textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of pelvis" EXACT [OBOL:automatic]
synonym: "textus connectivus of pelvis" EXACT [OBOL:automatic]
xref: MA:0000533
is_a: UBERON:0003838 ! abdominal segment connective tissue
relationship: part_of UBERON:0002355
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003595
name: foot connective tissue
def: "A portion of connective tissue that is part of a foot [Obol]." [OBOL:automatic]
synonym: "autopod of hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "connective tissue of foot" EXACT [OBOL:automatic]
synonym: "connective tissue of hind limb autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity textus connectivus" EXACT [OBOL:automatic]
synonym: "foot portion of connective tissue" EXACT [OBOL:automatic]
synonym: "foot textus connectivus" EXACT [OBOL:automatic]
synonym: "hind limb autopod connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb autopod connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member autopod connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity autopod connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of foot" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of foot" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of terminal segment of free lower limb" EXACT [OBOL:automatic]
xref: MA:0000644
is_a: UBERON:0003589 ! hindlimb connective tissue
relationship: part_of UBERON:0002387
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003596
name: ankle connective tissue
def: "A portion of connective tissue that is part of an ankle [Obol]." [OBOL:automatic]
synonym: "ankle portion of connective tissue" EXACT [OBOL:automatic]
synonym: "ankle textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of ankle" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of ankle" EXACT [OBOL:automatic]
synonym: "tarsal region connective tissue" EXACT [UBERON:cjm]
synonym: "textus connectivus of ankle" EXACT [OBOL:automatic]
xref: MA:0000639
is_a: UBERON:0003595 ! foot connective tissue
relationship: part_of UBERON:0004454
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0004454 ! tarsal region
relationship: part_of UBERON:0004454 ! tarsal region
[Term]
id: UBERON:0003597
name: hand digit connective tissue
def: "A portion of connective tissue that is part of a finger [Obol]." [OBOL:automatic]
synonym: "connective tissue of digit of hand" EXACT [OBOL:automatic]
synonym: "connective tissue of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of digitus manus" EXACT [OBOL:automatic]
synonym: "connective tissue of finger" EXACT [OBOL:automatic]
synonym: "connective tissue of hand digit" EXACT [OBOL:automatic]
synonym: "connective tissue of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "digit of hand connective tissue" EXACT [OBOL:automatic]
synonym: "digit of hand portion of connective tissue" EXACT [OBOL:automatic]
synonym: "digit of hand textus connectivus" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "digitus manus connective tissue" EXACT [OBOL:automatic]
synonym: "digitus manus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "digitus manus textus connectivus" EXACT [OBOL:automatic]
synonym: "finger connective tissue" EXACT [OBOL:automatic]
synonym: "finger portion of connective tissue" EXACT [OBOL:automatic]
synonym: "finger textus connectivus" EXACT [OBOL:automatic]
synonym: "hand digit portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hand digit textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of digit of hand" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of digitus manus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of finger" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hand digit" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit portion of connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of digit of hand" EXACT [OBOL:automatic]
synonym: "textus connectivus of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of digitus manus" EXACT [OBOL:automatic]
synonym: "textus connectivus of finger" EXACT [OBOL:automatic]
synonym: "textus connectivus of hand digit" EXACT [OBOL:automatic]
synonym: "textus connectivus of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
xref: MA:0000623
is_a: UBERON:0003598 ! hand connective tissue
relationship: part_of UBERON:0002389
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit
[Term]
id: UBERON:0003598
name: hand connective tissue
def: "A portion of connective tissue that is part of a hand [Obol]." [OBOL:automatic]
synonym: "arm autopod connective tissue" EXACT [OBOL:automatic]
synonym: "arm autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of arm connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region autopod connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of arm autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of hand" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "hand portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hand textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hand" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of hand" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of terminal segment of free upper limb" EXACT [OBOL:automatic]
xref: MA:0000620
is_a: UBERON:0003588 ! forelimb connective tissue
relationship: part_of UBERON:0002398
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0003599
name: tail connective tissue
def: "A portion of connective tissue that is part of a tail [Obol]." [OBOL:automatic]
synonym: "connective tissue of post-vent region" EXACT [OBOL:automatic]
synonym: "connective tissue of tail" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of post-vent region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of tail" EXACT [OBOL:automatic]
synonym: "post-vent region connective tissue" EXACT [OBOL:automatic]
synonym: "post-vent region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "post-vent region textus connectivus" EXACT [OBOL:automatic]
synonym: "tail portion of connective tissue" EXACT [OBOL:automatic]
synonym: "tail textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of post-vent region" EXACT [OBOL:automatic]
synonym: "textus connectivus of tail" EXACT [OBOL:automatic]
xref: MA:0000697
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0007812
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0007812 ! post-anal tail
relationship: part_of UBERON:0007812 ! post-anal tail
[Term]
id: UBERON:0003601
name: neck cartilage
def: "A cartilage that is part of a neck [Obol]." [OBOL:automatic]
synonym: "cartilage of neck" EXACT [OBOL:automatic]
synonym: "cartilage of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) cartilage" EXACT [OBOL:automatic]
xref: MA:0000586
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003568 ! neck connective tissue
relationship: part_of UBERON:0000974
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003603
name: lower respiratory tract cartilage
def: "A cartilage that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
synonym: "cartilage of lower respiratory tract" EXACT [OBOL:automatic]
xref: MA:0001819
xref: ncithesaurus:Lower_Respiratory_Tract_Cartilage
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003580 ! lower respiratory tract connective tissue
relationship: part_of UBERON:0001558
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0001558 ! lower respiratory tract
relationship: part_of UBERON:0001558 ! lower respiratory tract
[Term]
id: UBERON:0003604
name: trachea cartilage
def: "The cartilages of the trachea (or tracheal rings) vary from sixteen to twenty in number: each forms an imperfect ring, which occupies the anterior two-thirds or so of the circumference of the trachea, being deficient behind, where the tube is completed by fibrous tissue and unstriped muscular fibers." [Wikipedia:Tracheal_rings]
comment: Editor notes: check whether to classify as part of splanchoncranium
synonym: "cartilage of the trachea" RELATED [Wikipedia:Tracheal_rings]
synonym: "cartilage of trachea" EXACT [OBOL:automatic]
synonym: "cartilage of windpipe" EXACT [OBOL:automatic]
synonym: "cartilagines tracheales" RELATED LATIN [Wikipedia:Tracheal_rings]
synonym: "cartilaginous ring of trachea" EXACT [EMAPA:18699]
synonym: "cartilaginous trachea cartilage" EXACT [OBOL:automatic]
synonym: "cartilago trachealis" EXACT [FMA:7434]
synonym: "ring of the trachea" RELATED [Wikipedia:Tracheal_rings]
synonym: "trachea ring" RELATED []
synonym: "tracheal cartilage" EXACT [FMA:7434]
synonym: "tracheal ring" RELATED [Wikipedia:Tracheal_rings]
synonym: "windpipe cartilage" EXACT [OBOL:automatic]
xref: EMAPA:18699
xref: FMA:7434
xref: http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png
xref: MA:0001857
xref: ncithesaurus:Trachea_Cartilage
xref: SCTID:278979006
is_a: UBERON:0003571 ! trachea connective tissue
is_a: UBERON:0003603 ! lower respiratory tract cartilage
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0003126
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0003126 ! trachea
relationship: develops_from UBERON:0007267 ! trachea pre-cartilage rings
relationship: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003605
name: eye skin gland
def: "A skin gland that is part of a camera-type eye [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "camera-type eye skin gland" EXACT [OBOL:automatic]
synonym: "camera-type eye skin glands" EXACT [OBOL:automatic]
synonym: "camera-type eye skin glands set" EXACT [OBOL:automatic]
synonym: "skin gland of camera-type eye" EXACT [OBOL:automatic]
synonym: "skin gland of vertebrate eye" EXACT [OBOL:automatic]
synonym: "skin glands of camera-type eye" EXACT [OBOL:automatic]
synonym: "skin glands of vertebrate eye" EXACT [OBOL:automatic]
synonym: "skin glands set of camera-type eye" EXACT [OBOL:automatic]
synonym: "skin glands set of vertebrate eye" EXACT [OBOL:automatic]
synonym: "vertebrate eye skin gland" EXACT [OBOL:automatic]
synonym: "vertebrate eye skin glands" EXACT [OBOL:automatic]
synonym: "vertebrate eye skin glands set" EXACT [OBOL:automatic]
xref: MA:0002451
is_a: UBERON:0002419 ! skin gland
is_a: UBERON:0004859 ! eye gland
relationship: part_of UBERON:0000019
intersection_of: UBERON:0002419 ! skin gland
intersection_of: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0003606
name: limb long bone
def: "A long bone that is part of a limb [Obol]." [OBOL:automatic]
synonym: "long bone of limb" EXACT [OBOL:automatic]
xref: MA:0000298
is_a: UBERON:0002428 ! limb bone
is_a: UBERON:0002495 ! long bone
relationship: part_of UBERON:0002101
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003607
name: forelimb long bone
def: "A long bone that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb long bone" EXACT [OBOL:automatic]
synonym: "fore limb long bone" EXACT [OBOL:automatic]
synonym: "long bone of anteriormost limb" EXACT [OBOL:automatic]
synonym: "long bone of fore limb" EXACT [OBOL:automatic]
synonym: "long bone of forelimb" EXACT [OBOL:automatic]
synonym: "long bone of superior member" EXACT [OBOL:automatic]
synonym: "long bone of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member long bone" EXACT [OBOL:automatic]
synonym: "upper extremity long bone" EXACT [OBOL:automatic]
xref: MA:0000299
is_a: UBERON:0003606 ! limb long bone
is_a: UBERON:0008962 ! forelimb bone
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003608
name: hindlimb long bone
def: "A long bone that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hind limb long bone" EXACT [OBOL:automatic]
synonym: "inferior member long bone" EXACT [OBOL:automatic]
synonym: "long bone of hind limb" EXACT [OBOL:automatic]
synonym: "long bone of hindlimb" EXACT [OBOL:automatic]
synonym: "long bone of inferior member" EXACT [OBOL:automatic]
synonym: "long bone of lower extremity" EXACT [OBOL:automatic]
synonym: "lower extremity long bone" EXACT [OBOL:automatic]
xref: MA:0000300
is_a: UBERON:0003464 ! hindlimb bone
is_a: UBERON:0003606 ! limb long bone
relationship: part_of UBERON:0002103
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003609
name: aorta elastic tissue
def: "the dense connective tissue which contains predominantly elastic fibers and is found in the tunica media of the aorta wall." [MP:0009862]
synonym: "adult aorta elastic connective tissue" EXACT [OBOL:automatic]
synonym: "adult aorta elastic tissue" EXACT [OBOL:automatic]
synonym: "adult aorta textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "aorta elastic connective tissue" EXACT [OBOL:automatic]
synonym: "aorta textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "dorsal aorta elastic connective tissue" EXACT [OBOL:automatic]
synonym: "dorsal aorta elastic tissue" EXACT [OBOL:automatic]
synonym: "dorsal aorta textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of adult aorta" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of aorta" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of dorsal aorta" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "elastic tissue of adult aorta" EXACT [OBOL:automatic]
synonym: "elastic tissue of aorta" EXACT [OBOL:automatic]
synonym: "elastic tissue of dorsal aorta" EXACT [OBOL:automatic]
synonym: "elastic tissue of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of adult aorta" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of aorta" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of dorsal aorta" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree elastic connective tissue" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree elastic tissue" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree textus connectivus elasticus" EXACT [OBOL:automatic]
xref: MA:0002859
is_a: UBERON:0003614 ! blood vessel elastic tissue
relationship: part_of UBERON:0000947
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0003610
name: heart elastic tissue
def: "the type of heart connective tissue found in the endocardial layer that consists mainly of elastic fibers." [MP:0009863]
synonym: "elastic connective tissue of heart" EXACT [OBOL:automatic]
synonym: "elastic tissue of heart" EXACT [OBOL:automatic]
synonym: "heart elastic connective tissue" EXACT [OBOL:automatic]
synonym: "heart textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of heart" EXACT [OBOL:automatic]
xref: MA:0002858
is_a: UBERON:0003613 ! cardiovascular system elastic tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0003611
name: respiratory system elastic tissue
def: "An elastic tissue that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius elastic connective tissue" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius elastic tissue" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "elastic tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "elastic tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system elastic connective tissue" EXACT [OBOL:automatic]
synonym: "respiratory system textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001820
is_a: UBERON:0002521 ! elastic tissue
is_a: UBERON:0003570 ! respiratory system connective tissue
relationship: part_of UBERON:0001004
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0004777 ! respiratory system submucosa
[Term]
id: UBERON:0003613
name: cardiovascular system elastic tissue
def: "An elastic tissue that is part of a circulatory system [Obol]." [OBOL:automatic]
synonym: "cardiovascular system elastic connective tissue" EXACT [OBOL:automatic]
synonym: "cardiovascular system textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "circulatory system elastic connective tissue" EXACT [OBOL:automatic]
synonym: "circulatory system elastic tissue" EXACT [OBOL:automatic]
synonym: "circulatory system textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of cardiovascular system" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of circulatory system" EXACT [OBOL:automatic]
synonym: "elastic tissue of cardiovascular system" EXACT [OBOL:automatic]
synonym: "elastic tissue of circulatory system" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of cardiovascular system" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of circulatory system" EXACT [OBOL:automatic]
xref: MA:0002857
is_a: UBERON:0002521 ! elastic tissue
relationship: part_of UBERON:0001009
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0001009 ! circulatory system
relationship: part_of UBERON:0001009 ! circulatory system
relationship: part_of UBERON:0004535 ! cardiovascular system
[Term]
id: UBERON:0003614
name: blood vessel elastic tissue
def: "An elastic tissue that is part of a blood vessel [Obol]." [OBOL:automatic]
synonym: "blood vessel elastic connective tissue" EXACT [OBOL:automatic]
synonym: "blood vessel textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of blood vessel" EXACT [OBOL:automatic]
synonym: "elastic tissue of blood vessel" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of blood vessel" EXACT [OBOL:automatic]
xref: MA:0002856
is_a: UBERON:0003613 ! cardiovascular system elastic tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001981
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0003615
name: lung elastic tissue
def: "An elastic tissue that is part of a lung [Obol]." [OBOL:automatic]
synonym: "elastic connective tissue of lung" EXACT [OBOL:automatic]
synonym: "elastic tissue of lung" EXACT [OBOL:automatic]
synonym: "lung elastic connective tissue" EXACT [OBOL:automatic]
synonym: "lung textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of lung" EXACT [OBOL:automatic]
xref: MA:0002860
is_a: UBERON:0000114 ! lung connective tissue
is_a: UBERON:0003611 ! respiratory system elastic tissue
relationship: part_of UBERON:0002048
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0003616
name: bronchus elastic tissue
def: "An elastic tissue that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "bronchi elastic connective tissue" EXACT [OBOL:automatic]
synonym: "bronchi elastic tissue" EXACT [OBOL:automatic]
synonym: "bronchi textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "bronchial trunk elastic connective tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk elastic tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "bronchus elastic connective tissue" EXACT [OBOL:automatic]
synonym: "bronchus textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of bronchi" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of bronchus" EXACT [OBOL:automatic]
synonym: "elastic tissue of bronchi" EXACT [OBOL:automatic]
synonym: "elastic tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "elastic tissue of bronchus" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of bronchi" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of bronchial trunk" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of bronchus" EXACT [OBOL:automatic]
xref: MA:0001838
xref: ncithesaurus:Bronchus_Elastic_Tissue
is_a: UBERON:0003592 ! bronchus connective tissue
is_a: UBERON:0003611 ! respiratory system elastic tissue
relationship: part_of UBERON:0002185
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0001957 ! submucosa of bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0003617
name: trachea elastic tissue
def: "An elastic tissue that is part of a trachea [Obol]." [OBOL:automatic]
synonym: "cartilaginous trachea elastic connective tissue" EXACT [OBOL:automatic]
synonym: "cartilaginous trachea elastic tissue" EXACT [OBOL:automatic]
synonym: "cartilaginous trachea textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of cartilaginous trachea" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of vertebrate trachea" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of windpipe" EXACT [OBOL:automatic]
synonym: "elastic tissue of cartilaginous trachea" EXACT [OBOL:automatic]
synonym: "elastic tissue of vertebrate trachea" EXACT [OBOL:automatic]
synonym: "elastic tissue of windpipe" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of cartilaginous trachea" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of vertebrate trachea" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of windpipe" EXACT [OBOL:automatic]
synonym: "vertebrate trachea elastic connective tissue" EXACT [OBOL:automatic]
synonym: "vertebrate trachea elastic tissue" EXACT [OBOL:automatic]
synonym: "vertebrate trachea textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "windpipe elastic connective tissue" EXACT [OBOL:automatic]
synonym: "windpipe elastic tissue" EXACT [OBOL:automatic]
synonym: "windpipe textus connectivus elasticus" EXACT [OBOL:automatic]
xref: MA:0001861
is_a: UBERON:0003571 ! trachea connective tissue
is_a: UBERON:0003611 ! respiratory system elastic tissue
relationship: part_of UBERON:0003126
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0003126 ! trachea
relationship: part_of UBERON:0002202 ! submucosa of trachea
relationship: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003618
name: aorta tunica media
def: "the middle layer of the aorta wall, containing the smooth muscle layer and elastic fibers." [MP:0009873]
synonym: "adult aorta tunica media" EXACT [OBOL:automatic]
synonym: "dorsal aorta tunica media" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree tunica media" EXACT [OBOL:automatic]
synonym: "tunica media of adult aorta" EXACT [OBOL:automatic]
synonym: "tunica media of aorta" EXACT [OBOL:automatic]
synonym: "tunica media of dorsal aorta" EXACT [OBOL:automatic]
synonym: "tunica media of trunk of aortic tree" EXACT [OBOL:automatic]
xref: FMA:74433
xref: MA:0002903
xref: SCTID:48467007
is_a: UBERON:0004178 ! aorta smooth muscle tissue
is_a: UBERON:0007239 ! tunica media of artery
relationship: part_of UBERON:0000947
intersection_of: UBERON:0002522 ! tunica media
intersection_of: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0004663 ! aorta wall
[Term]
id: UBERON:0003619
name: aorta tunica intima
def: "the innermost layer of the aorta, containing the endothelium and an inner elastic membrane." [MP:0009872]
synonym: "adult aorta tunica intima" EXACT [OBOL:automatic]
synonym: "dorsal aorta tunica intima" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree tunica intima" EXACT [OBOL:automatic]
synonym: "tunica intima of adult aorta" EXACT [OBOL:automatic]
synonym: "tunica intima of aorta" EXACT [OBOL:automatic]
synonym: "tunica intima of dorsal aorta" EXACT [OBOL:automatic]
synonym: "tunica intima of trunk of aortic tree" EXACT [OBOL:automatic]
xref: FMA:74419
xref: MA:0002904
xref: SCTID:362031007
is_a: UBERON:0005740 ! tunica intima of artery
relationship: part_of UBERON:0000947
intersection_of: UBERON:0002523 ! tunica intima
intersection_of: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0004663 ! aorta wall
[Term]
id: UBERON:0003620
name: hand digit 1 phalanx
def: "A phalanx that is part of a hand digit 1 [Obol]." [OBOL:automatic]
synonym: "digit long bone of first digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 1" EXACT [OBOL:automatic]
synonym: "digit long bone of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "digit long bone of thumb" EXACT [OBOL:automatic]
synonym: "first digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "first digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "first digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 1 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 1 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of first digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 1" EXACT [OBOL:automatic]
synonym: "long bone of digit of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "long bone of digit of thumb" EXACT [OBOL:automatic]
synonym: "phalanx of first digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 1" EXACT [OBOL:automatic]
synonym: "phalanx of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "phalanx of thumb" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] digit long bone" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] long bone of digit" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] phalanx" EXACT [OBOL:automatic]
synonym: "thumb digit long bone" EXACT [OBOL:automatic]
synonym: "thumb long bone of digit" EXACT [OBOL:automatic]
synonym: "thumb phalanx" EXACT [OBOL:automatic]
xref: EMAPA:19113
xref: FMA:35477
xref: MA:0001389
xref: ncithesaurus:Hand_Digit_1_Phalanx
xref: SCTID:181975002
is_a: UBERON:0001436 ! phalanx of finger
relationship: part_of UBERON:0001463
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0001463 ! hand digit 1
relationship: develops_from UBERON:0010675 ! finger 1 phalanx cartilage condensation
relationship: part_of UBERON:0001463 ! hand digit 1
[Term]
id: UBERON:0003622
name: hand digit 2
def: "2nd digit of the fore autopod." [Wikipedia:Index_finger]
synonym: "2nd digit of hand" EXACT []
synonym: "2nd finger" EXACT []
synonym: "digit 2 of fore-paw" EXACT [EMAPA:17432]
synonym: "finger 2" EXACT [EHDAA2:0000517]
synonym: "fore digit II" EXACT [AAO:0010640]
synonym: "index finger" NARROW []
synonym: "second digit of hand" EXACT [FMA:24946]
synonym: "second finger" EXACT []
xref: AAO:0010640
xref: EHDAA2:0000517
xref: EMAPA:17432
xref: FMA:24946
xref: http://upload.wikimedia.org/wikipedia/commons/d/d5/Index_finger.JPG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d5/Index_finger.JPG/200px-Index_finger.JPG
xref: MA:0000455
xref: ncithesaurus:Hand_Digit_2
xref: SCTID:362758006
is_a: UBERON:0002389 ! hand digit
is_a: UBERON:0006049 ! digit 2
relationship: part_of UBERON:0002398
intersection_of: UBERON:0006049 ! digit 2
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0003623
name: hand digit 3
def: "3rd digit of the fore autopod." [Wikipedia:Middle_finger]
synonym: "3rd digit of hand" EXACT []
synonym: "3rd finger" EXACT []
synonym: "digit 3 of fore-paw" EXACT [EMAPA:17435]
synonym: "digitus medius" RELATED LATIN [Wikipedia:Middle_finger]
synonym: "finger 3" EXACT [EHDAA2:0000523]
synonym: "fore digit III" EXACT [AAO:0010641]
synonym: "middle finger" NARROW []
synonym: "third digit of hand" EXACT [FMA:24947]
synonym: "third finger" EXACT []
xref: AAO:0010641
xref: EHDAA2:0000523
xref: EMAPA:17435
xref: FMA:24947
xref: http://upload.wikimedia.org/wikipedia/commons/f/fd/Middle_finger.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fd/Middle_finger.jpg/200px-Middle_finger.jpg
xref: MA:0000456
xref: ncithesaurus:Hand_Digit_3
xref: SCTID:362763005
is_a: UBERON:0002389 ! hand digit
is_a: UBERON:0006050 ! digit 3
relationship: part_of UBERON:0002398
intersection_of: UBERON:0006050 ! digit 3
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0003624
name: hand digit 4
def: "4th digit of the fore autopod." [Wikipedia:Ring_finger]
synonym: "4th digit of hand" EXACT []
synonym: "4th finger" EXACT []
synonym: "digit 4 of fore-paw" EXACT [EMAPA:17438]
synonym: "digitus annularis" RELATED LATIN [Wikipedia:Ring_finger]
synonym: "finger 4" EXACT [EHDAA2:0000529]
synonym: "fore digit IV" EXACT [AAO:0010642]
synonym: "fourth digit of hand" EXACT [FMA:24948]
synonym: "fourth finger" EXACT []
synonym: "ring finger" NARROW []
xref: AAO:0010642
xref: EHDAA2:0000529
xref: EMAPA:17438
xref: FMA:24948
xref: http://upload.wikimedia.org/wikipedia/commons/1/14/Ring_finger.JPG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Ring_finger.JPG/200px-Ring_finger.JPG
xref: MA:0000457
xref: ncithesaurus:Hand_Digit_4
xref: SCTID:362768001
is_a: UBERON:0002389 ! hand digit
is_a: UBERON:0006051 ! digit 4
relationship: part_of UBERON:0002398
intersection_of: UBERON:0006051 ! digit 4
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0003625
name: hand digit 5
def: "5th digit of the fore autopod." [Wikipedia:Little_finger]
synonym: "5th digit of hand" EXACT []
synonym: "5th finger" EXACT []
synonym: "digit 5 of fore-paw" EXACT [EMAPA:17441]
synonym: "digitus minimus" RELATED LATIN [Wikipedia:Little_finger]
synonym: "fifth digit of hand" EXACT [FMA:24949]
synonym: "fifth finger" EXACT []
synonym: "finger 5" EXACT [EHDAA2:0000535]
synonym: "fore digit V" EXACT [AAO:0010643]
synonym: "little finger" NARROW []
synonym: "manus, digitus" RELATED LATIN [Wikipedia:Little_finger]
synonym: "quintus, digitus V" RELATED LATIN [Wikipedia:Little_finger]
xref: AAO:0010643
xref: EHDAA2:0000535
xref: EMAPA:17441
xref: FMA:24949
xref: http://upload.wikimedia.org/wikipedia/commons/e/ed/Pink.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Pink.jpg/200px-Pink.jpg
xref: MA:0000458
xref: ncithesaurus:Hand_Digit_5
xref: SCTID:362773007
is_a: UBERON:0002389 ! hand digit
is_a: UBERON:0006052 ! digit 5
relationship: part_of UBERON:0002398
intersection_of: UBERON:0006052 ! digit 5
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0003631
name: foot digit 1
def: "1st digit of the hind autopod." [Wikipedia:Hallux]
synonym: "big toe" NARROW []
synonym: "digit 1 of hind-paw" EXACT [EMAPA:17460]
synonym: "digitus primus (I) pedis" RELATED [BTO:0002349]
synonym: "great toe" EXACT [FMA:25047]
synonym: "hallex" RELATED []
synonym: "hallux" EXACT [FMA:TA]
synonym: "hallux; digitus primus [I]" EXACT [FMA:25047]
synonym: "hind digit I" EXACT [AAO:0010644]
synonym: "toe 1" EXACT [EHDAA2:0002037]
xref: AAO:0010644
xref: BTO:0002349
xref: EHDAA2:0002037
xref: EMAPA:17460
xref: FMA:25047
xref: GAID:45
xref: http://upload.wikimedia.org/wikipedia/commons/a/ab/RightFootToes.jpg
xref: MA:0000465
xref: MESH:A.01.378.610.250.300.792.380
xref: ncithesaurus:Foot_Digit_1
xref: SCTID:302546000
xref: VSAO:0000201
is_a: UBERON:0001466 ! foot digit
is_a: UBERON:0006048 ! digit 1
relationship: part_of UBERON:0002387
intersection_of: UBERON:0006048 ! digit 1
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003632
name: foot digit 2
def: "2nd digit of the hind autopod." [UBERON:cjm]
synonym: "2nd toe" EXACT []
synonym: "digit 2 of hind-paw" EXACT [EMAPA:17463]
synonym: "digitus secundus (II) pedis" RELATED [BTO:0002350]
synonym: "digitus secundus [ii]" EXACT [FMA:25048]
synonym: "digitus secundus pedis" EXACT [BTO:0002350]
synonym: "hind digit II" EXACT [AAO:0010645]
synonym: "second digit of foot" EXACT [FMA:25048]
synonym: "second toe" EXACT [FMA:25048]
synonym: "toe 2" EXACT [EHDAA2:0002042]
xref: AAO:0010645
xref: BTO:0002350
xref: EHDAA2:0002042
xref: EMAPA:17463
xref: FMA:25048
xref: MA:0000466
xref: ncithesaurus:Foot_Digit_2
xref: SCTID:362817008
is_a: UBERON:0001466 ! foot digit
is_a: UBERON:0006049 ! digit 2
relationship: part_of UBERON:0002387
intersection_of: UBERON:0006049 ! digit 2
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003633
name: foot digit 3
def: "3rd digit of the hind autopod." [UBERON:cjm]
synonym: "3rd toe" EXACT []
synonym: "digit 3 of hind-paw" EXACT [EMAPA:17466]
synonym: "digitus tertius (III) pedis" RELATED [BTO:0002351]
synonym: "digitus tertius [iii]" EXACT [FMA:25051]
synonym: "digitus tertius pedis" EXACT [BTO:0002351]
synonym: "hind digit III" EXACT [AAO:0010646]
synonym: "third digit of foot" EXACT [FMA:25051]
synonym: "third toe" EXACT [FMA:25051]
synonym: "toe 3" EXACT [EHDAA2:0002047]
xref: AAO:0010646
xref: BTO:0002351
xref: EHDAA2:0002047
xref: EMAPA:17466
xref: FMA:25051
xref: MA:0000467
xref: ncithesaurus:Foot_Digit_3
xref: SCTID:362821001
is_a: UBERON:0001466 ! foot digit
is_a: UBERON:0006050 ! digit 3
relationship: part_of UBERON:0002387
intersection_of: UBERON:0006050 ! digit 3
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003634
name: foot digit 4
def: "4th digit of the hind autopod." [UBERON:cjm]
synonym: "4th toe" EXACT []
synonym: "digit 4 of hind-paw" EXACT [EMAPA:17469]
synonym: "digitus quartis pedis" EXACT [BTO:0002352]
synonym: "digitus quartus (IV) pedis" RELATED [BTO:0002352]
synonym: "digitus quartus [iv]" EXACT [FMA:25052]
synonym: "fourth digit of foot" EXACT [FMA:25052]
synonym: "fourth toe" EXACT [FMA:25052]
synonym: "hind digit IV" EXACT [AAO:0010656]
synonym: "toe 4" EXACT [EHDAA2:0002052]
xref: AAO:0010656
xref: BTO:0002352
xref: EHDAA2:0002052
xref: EMAPA:17469
xref: FMA:25052
xref: MA:0000468
xref: ncithesaurus:Foot_Digit_4
xref: SCTID:362826006
is_a: UBERON:0001466 ! foot digit
is_a: UBERON:0006051 ! digit 4
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003635
name: foot digit 5
def: "5th digit of the hind autopod." [UBERON:cjm, Wikipedia:Fifth_toe]
synonym: "5th toe" EXACT []
synonym: "digit 5 of hind-paw" EXACT [EMAPA:17472]
synonym: "Digitus minimus pedis; Digitus quintus pedis" RELATED LATIN [Wikipedia:Fifth_toe]
synonym: "digitus minimus; digitus quintus [v]" EXACT [FMA:25053]
synonym: "digitus quintus [v] pedis" EXACT [FMA:25053, FMA:TA]
synonym: "fifth digit of foot" EXACT [FMA:25053]
synonym: "fifth toe" EXACT [FMA:25053]
synonym: "hind digit V" EXACT [AAO:0010658]
synonym: "little toe" NARROW []
synonym: "toe 5" EXACT [EHDAA2:0002057]
xref: AAO:0010658
xref: BTO:0002353
xref: EHDAA2:0002057
xref: EMAPA:17472
xref: FMA:25053
xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MA:0000469
xref: ncithesaurus:Foot_Digit_5
xref: SCTID:362830009
is_a: UBERON:0001466 ! foot digit
is_a: UBERON:0006052 ! digit 5
relationship: part_of UBERON:0002387
intersection_of: UBERON:0006052 ! digit 5
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003636
name: hand digit 2 phalanx
def: "A phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic]
synonym: "2 nd digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "2 nd digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "2 nd digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "2 nd finger digit long bone" EXACT [OBOL:automatic]
synonym: "2 nd finger long bone of digit" EXACT [OBOL:automatic]
synonym: "2 nd finger phalanx" EXACT [OBOL:automatic]
synonym: "digit long bone of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of 2 nd finger" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 2" EXACT [OBOL:automatic]
synonym: "digit long bone of second finger" EXACT [OBOL:automatic]
synonym: "hand digit 2 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 2 long bone of digit" EXACT [OBOL:automatic]
synonym: "index finger phalanx" EXACT [FMA:35480]
synonym: "long bone of digit of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of 2 nd finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 2" EXACT [OBOL:automatic]
synonym: "long bone of digit of second finger" EXACT [OBOL:automatic]
synonym: "phalanx of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of 2 nd finger" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 2" EXACT [OBOL:automatic]
synonym: "phalanx of index finger" EXACT [FMA:35480]
synonym: "phalanx of second finger" EXACT [OBOL:automatic]
synonym: "second finger digit long bone" EXACT [OBOL:automatic]
synonym: "second finger long bone of digit" EXACT [OBOL:automatic]
synonym: "second finger phalanx" EXACT [OBOL:automatic]
xref: EMAPA:19115
xref: FMA:35480
xref: MA:0001390
xref: ncithesaurus:Hand_Digit_2_Phalanx
xref: SCTID:361783009
is_a: UBERON:0001436 ! phalanx of finger
relationship: part_of UBERON:0003622
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003622 ! hand digit 2
relationship: develops_from UBERON:0010676 ! finger 2 phalanx cartilage condensation
relationship: part_of UBERON:0003622 ! hand digit 2
[Term]
id: UBERON:0003637
name: hand digit 3 phalanx
def: "A phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic]
synonym: "3 rd digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "3 rd digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "3 rd digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "3 rd finger digit long bone" EXACT [OBOL:automatic]
synonym: "3 rd finger long bone of digit" EXACT [OBOL:automatic]
synonym: "3 rd finger phalanx" EXACT [OBOL:automatic]
synonym: "digit long bone of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of 3 rd finger" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 3" EXACT [OBOL:automatic]
synonym: "digit long bone of third finger" EXACT [OBOL:automatic]
synonym: "hand digit 3 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 3 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of 3 rd finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 3" EXACT [OBOL:automatic]
synonym: "long bone of digit of third finger" EXACT [OBOL:automatic]
synonym: "middle finger phalanx" EXACT [FMA:35483]
synonym: "phalanx of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of 3 rd finger" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 3" EXACT [OBOL:automatic]
synonym: "phalanx of middle finger" EXACT [FMA:35483]
synonym: "phalanx of third finger" EXACT [OBOL:automatic]
synonym: "third finger digit long bone" EXACT [OBOL:automatic]
synonym: "third finger long bone of digit" EXACT [OBOL:automatic]
synonym: "third finger phalanx" EXACT [OBOL:automatic]
xref: EMAPA:19117
xref: FMA:35483
xref: MA:0001391
xref: ncithesaurus:Hand_Digit_3_Phalanx
xref: SCTID:361785002
is_a: UBERON:0001436 ! phalanx of finger
relationship: part_of UBERON:0003623
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003623 ! hand digit 3
relationship: develops_from UBERON:0010677 ! finger 3 phalanx cartilage condensation
relationship: part_of UBERON:0003623 ! hand digit 3
[Term]
id: UBERON:0003638
name: hand digit 4 phalanx
def: "A phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic]
synonym: "4 th digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "4 th digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "4 th digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "4 th finger digit long bone" EXACT [OBOL:automatic]
synonym: "4 th finger long bone of digit" EXACT [OBOL:automatic]
synonym: "4 th finger phalanx" EXACT [OBOL:automatic]
synonym: "digit long bone of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of 4 th finger" EXACT [OBOL:automatic]
synonym: "digit long bone of fourth finger" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 4" EXACT [OBOL:automatic]
synonym: "fourth finger digit long bone" EXACT [OBOL:automatic]
synonym: "fourth finger long bone of digit" EXACT [OBOL:automatic]
synonym: "fourth finger phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 4 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 4 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of 4 th finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of fourth finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 4" EXACT [OBOL:automatic]
synonym: "phalanx of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of 4 th finger" EXACT [OBOL:automatic]
synonym: "phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 4" EXACT [OBOL:automatic]
synonym: "phalanx of ring finger" EXACT [FMA:35486]
synonym: "ring finger phalanx" EXACT [FMA:35486]
xref: EMAPA:19119
xref: FMA:35486
xref: MA:0001392
xref: ncithesaurus:Hand_Digit_4_Phalanx
xref: SCTID:361787005
is_a: UBERON:0001436 ! phalanx of finger
relationship: part_of UBERON:0003624
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003624 ! hand digit 4
relationship: develops_from UBERON:0010678 ! finger 4 phalanx cartilage condensation
relationship: part_of UBERON:0003624 ! hand digit 4
[Term]
id: UBERON:0003639
name: hand digit 5 phalanx
def: "A phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic]
synonym: "5 th digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "5 th digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "5 th digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "5 th finger digit long bone" EXACT [OBOL:automatic]
synonym: "5 th finger long bone of digit" EXACT [OBOL:automatic]
synonym: "5 th finger phalanx" EXACT [OBOL:automatic]
synonym: "digit long bone of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of 5 th finger" EXACT [OBOL:automatic]
synonym: "digit long bone of fifth finger" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 5" EXACT [OBOL:automatic]
synonym: "fifth finger digit long bone" EXACT [OBOL:automatic]
synonym: "fifth finger long bone of digit" EXACT [OBOL:automatic]
synonym: "fifth finger phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 5 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 5 long bone of digit" EXACT [OBOL:automatic]
synonym: "little finger phalanx" EXACT [FMA:35489]
synonym: "long bone of digit of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of 5 th finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of fifth finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 5" EXACT [OBOL:automatic]
synonym: "phalanx of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of 5 th finger" EXACT [OBOL:automatic]
synonym: "phalanx of fifth digit of hand" EXACT [FMA:35489]
synonym: "phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 5" EXACT [OBOL:automatic]
synonym: "phalanx of little finger" EXACT [FMA:35489]
xref: EMAPA:19121
xref: FMA:35489
xref: MA:0001393
xref: ncithesaurus:Hand_Digit_5_Phalanx
xref: SCTID:361789008
is_a: UBERON:0001436 ! phalanx of finger
relationship: part_of UBERON:0003625
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003625 ! hand digit 5
relationship: develops_from UBERON:0010679 ! finger 5 phalanx cartilage condensation
relationship: part_of UBERON:0003625 ! hand digit 5
[Term]
id: UBERON:0003640
name: foot digit 1 phalanx
def: "A phalanx that is part of a foot digit 1 [Obol]." [OBOL:automatic]
synonym: "big toe phalanx" EXACT [FMA:32884]
synonym: "digit long bone of foot digit 1" EXACT [OBOL:automatic]
synonym: "digit long bone of hallux" EXACT [OBOL:automatic]
synonym: "foot digit 1 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 1 long bone of digit" EXACT [OBOL:automatic]
synonym: "hallux digit long bone" EXACT [OBOL:automatic]
synonym: "hallux long bone of digit" EXACT [OBOL:automatic]
synonym: "hallux phalanx" EXACT [OBOL:automatic]
synonym: "long bone of digit of foot digit 1" EXACT [OBOL:automatic]
synonym: "long bone of digit of hallux" EXACT [OBOL:automatic]
synonym: "phalanx of big toe" EXACT [FMA:32884]
synonym: "phalanx of first digit of foot" EXACT [FMA:32884]
synonym: "phalanx of foot digit 1" EXACT [OBOL:automatic]
synonym: "phalanx of great toe" EXACT [FMA:32884]
synonym: "phalanx of hallux" EXACT [OBOL:automatic]
xref: EMAPA:19124
xref: FMA:32884
xref: MA:0001381
xref: ncithesaurus:Foot_Digit_1_Phalanx
xref: SCTID:361798006
is_a: UBERON:0001449 ! phalanx of toe
relationship: part_of UBERON:0003631
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003631 ! foot digit 1
relationship: develops_from UBERON:0010680 ! toe 1 phalanx cartilage condensation
relationship: part_of UBERON:0003631 ! foot digit 1
[Term]
id: UBERON:0003641
name: foot digit 2 phalanx
def: "A phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic]
synonym: "digit long bone of foot digit 2" EXACT [OBOL:automatic]
synonym: "foot digit 2 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 2 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of foot digit 2" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit 2" EXACT [OBOL:automatic]
synonym: "phalanx of second toe" EXACT [FMA:32899]
synonym: "second toe phalanx" EXACT [FMA:32899]
xref: EMAPA:19126
xref: FMA:32899
xref: MA:0001382
xref: ncithesaurus:Foot_Digit_2_Phalanx
xref: SCTID:361800004
is_a: UBERON:0001449 ! phalanx of toe
relationship: part_of UBERON:0003632
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003632 ! foot digit 2
relationship: develops_from UBERON:0010681 ! toe 2 phalanx cartilage condensation
relationship: part_of UBERON:0003632 ! foot digit 2
[Term]
id: UBERON:0003642
name: foot digit 3 phalanx
def: "A phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic]
synonym: "digit long bone of foot digit 3" EXACT [OBOL:automatic]
synonym: "foot digit 3 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 3 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of foot digit 3" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit 3" EXACT [OBOL:automatic]
synonym: "phalanx of third toe" EXACT [FMA:32900]
synonym: "third toe phalanx" EXACT [FMA:32900]
xref: EMAPA:19128
xref: FMA:32900
xref: MA:0001383
xref: ncithesaurus:Foot_Digit_3_Phalanx
xref: SCTID:361802007
is_a: UBERON:0001449 ! phalanx of toe
relationship: part_of UBERON:0003633
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003633 ! foot digit 3
relationship: develops_from UBERON:0010682 ! toe 3 phalanx cartilage condensation
relationship: part_of UBERON:0003633 ! foot digit 3
[Term]
id: UBERON:0003643
name: respiratory system arterial blood vessel
def: "An arterial blood vessel that is part of a respiratory system [Obol]." [OBOL:automatic]
xref: MA:0001800
is_a: UBERON:0003504 ! respiratory system blood vessel
is_a: UBERON:0003509 ! arterial blood vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0003509 ! arterial blood vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003644
name: kidney arterial blood vessel
def: "An arterial blood vessel that is part of a kidney [Obol]." [OBOL:automatic]
xref: MA:0002578
is_a: UBERON:0003509 ! arterial blood vessel
is_a: UBERON:0003517 ! kidney blood vessel
relationship: part_of UBERON:0002113
intersection_of: UBERON:0003509 ! arterial blood vessel
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0003645
name: metacarpal bone of digit 1
synonym: "finger 1 metacarpus" EXACT []
synonym: "first digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "first digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "first metacarpal bone" EXACT [FMA:23899]
synonym: "hand digit 1 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 1 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal 1" EXACT []
synonym: "metacarpal bone digit 1" EXACT [MA:0001364]
synonym: "metacarpal bone of first digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 1" EXACT [OBOL:automatic]
synonym: "metacarpal bone of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "metacarpal bone of thumb" EXACT [OBOL:automatic]
synonym: "metacarpal I" EXACT [FMA:23899]
synonym: "metacarpal of first digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 1" EXACT [OBOL:automatic]
synonym: "metacarpal of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "metacarpal of thumb" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] metacarpal" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] metacarpal bone" EXACT [OBOL:automatic]
synonym: "thumb metacarpal" EXACT [OBOL:automatic]
synonym: "thumb metacarpal bone" EXACT [OBOL:automatic]
xref: AAO:0010616
xref: EMAPA:19112
xref: FMA:23899
xref: MA:0001364
xref: ncithesaurus:Metacarpal_Bone_Digit_1
xref: SCTID:181973009
property_value: "ray_number" "1" xsd:nonNegativeInteger
is_a: UBERON:0002374 ! metacarpal bone
relationship: distally_connected_to UBERON:0004338
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: distally_connected_to UBERON:0004338 ! proximal phalanx of hand digit 1
relationship: develops_from UBERON:0010570 ! finger 1 metacarpus cartilage condensation
relationship: distally_connected_to UBERON:0004338 ! proximal phalanx of hand digit 1
[Term]
id: UBERON:0003646
name: metacarpal bone of digit 2
synonym: "2 nd digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "2 nd digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "2 nd finger metacarpal" EXACT [OBOL:automatic]
synonym: "2 nd finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "finger 2 metacarpus" EXACT []
synonym: "hand digit 2 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 2 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal 2" EXACT []
synonym: "metacarpal bone digit 2" EXACT [MA:0001365]
synonym: "metacarpal bone of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 2 nd finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 2" EXACT [OBOL:automatic]
synonym: "metacarpal bone of second finger" EXACT [OBOL:automatic]
synonym: "metacarpal II" EXACT [FMA:23900]
synonym: "metacarpal of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of 2 nd finger" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 2" EXACT [OBOL:automatic]
synonym: "metacarpal of second finger" EXACT [OBOL:automatic]
synonym: "second finger metacarpal" EXACT [OBOL:automatic]
synonym: "second finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "second metacarpal bone" EXACT [FMA:23900]
xref: AAO:0000853
xref: EMAPA:19114
xref: FMA:23900
xref: MA:0001365
xref: ncithesaurus:Metacarpal_Bone_Digit_2
xref: SCTID:263399007
property_value: "ray_number" "2" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with the prepollex and carpal 2(1) or carpal 2+3(1+2) proximally and with the proximal phalanx of digit II(I) distally.[AAO]" xsd:string
is_a: UBERON:0002374 ! metacarpal bone
relationship: distally_connected_to UBERON:0004328
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: distally_connected_to UBERON:0004328 ! proximal phalanx of hand digit 2
relationship: develops_from UBERON:0010571 ! finger 2 metacarpus cartilage condensation
relationship: distally_connected_to UBERON:0004328 ! proximal phalanx of hand digit 2
[Term]
id: UBERON:0003647
name: metacarpal bone of digit 3
synonym: "3 rd digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "3 rd digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "3 rd finger metacarpal" EXACT [OBOL:automatic]
synonym: "3 rd finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "finger 3 metacarpus" EXACT []
synonym: "hand digit 3 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 3 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal 3" EXACT []
synonym: "metacarpal bone digit 3" EXACT [MA:0001366]
synonym: "metacarpal bone of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 3 rd finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 3" EXACT [OBOL:automatic]
synonym: "metacarpal bone of third finger" EXACT [OBOL:automatic]
synonym: "metacarpal III" EXACT [FMA:23901]
synonym: "metacarpal of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of 3 rd finger" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 3" EXACT [OBOL:automatic]
synonym: "metacarpal of third finger" EXACT [OBOL:automatic]
synonym: "third finger metacarpal" EXACT [OBOL:automatic]
synonym: "third finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "third metacarpal bone" EXACT [FMA:23901]
xref: AAO:0000854
xref: EMAPA:19116
xref: FMA:23901
xref: MA:0001366
xref: ncithesaurus:Metacarpal_Bone_Digit_3
xref: SCTID:263400000
property_value: "ray_number" "3" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with carpal 3(2) proximally and with the proximal phalanx of digit III(II) distally.[AAO]" xsd:string
is_a: UBERON:0002374 ! metacarpal bone
relationship: distally_connected_to UBERON:0004329
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: distally_connected_to UBERON:0004329 ! proximal phalanx of hand digit 3
relationship: develops_from UBERON:0010572 ! finger 3 metacarpus cartilage condensation
relationship: distally_connected_to UBERON:0004329 ! proximal phalanx of hand digit 3
[Term]
id: UBERON:0003648
name: metacarpal bone of digit 4
synonym: "4 th digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "4 th digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "4 th finger metacarpal" EXACT [OBOL:automatic]
synonym: "4 th finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "finger 4 metacarpus" EXACT []
synonym: "fourth finger metacarpal" EXACT [OBOL:automatic]
synonym: "fourth finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "fourth metacarpal bone" EXACT [FMA:23902]
synonym: "hand digit 4 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 4 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal 4" EXACT []
synonym: "metacarpal bone digit 4" EXACT [MA:0001367]
synonym: "metacarpal bone of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 4 th finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of fourth finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 4" EXACT [OBOL:automatic]
synonym: "metacarpal IV" EXACT [FMA:23902]
synonym: "metacarpal of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of 4 th finger" EXACT [OBOL:automatic]
synonym: "metacarpal of fourth finger" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 4" EXACT [OBOL:automatic]
xref: AAO:0010615
xref: EMAPA:19118
xref: FMA:23902
xref: MA:0001367
xref: ncithesaurus:Metacarpal_Bone_Digit_4
xref: SCTID:263401001
property_value: "ray_number" "4" xsd:nonNegativeInteger
is_a: UBERON:0002374 ! metacarpal bone
relationship: distally_connected_to UBERON:0004330
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: distally_connected_to UBERON:0004330 ! proximal phalanx of hand digit 4
relationship: develops_from UBERON:0010573 ! finger 4 metacarpus cartilage condensation
relationship: distally_connected_to UBERON:0004330 ! proximal phalanx of hand digit 4
[Term]
id: UBERON:0003649
name: metacarpal bone of digit 5
comment: note FMA also has FMA:36782
synonym: "5 th digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "5 th digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "5 th finger metacarpal" EXACT [OBOL:automatic]
synonym: "5 th finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "fifth finger metacarpal" EXACT [OBOL:automatic]
synonym: "fifth finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "fifth metacarpal bone" EXACT [FMA:23903]
synonym: "finger 5 metacarpus" EXACT []
synonym: "hand digit 5 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 5 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal 5" EXACT []
synonym: "metacarpal bone digit 5" EXACT [MA:0001368]
synonym: "metacarpal bone of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 5 th finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of fifth finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 5" EXACT [OBOL:automatic]
synonym: "metacarpal of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of 5 th finger" EXACT [OBOL:automatic]
synonym: "metacarpal of fifth finger" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 5" EXACT [OBOL:automatic]
synonym: "metacarpal V" EXACT []
xref: AAO:0000855
xref: EMAPA:19120
xref: FMA:23903
xref: MA:0001368
xref: ncithesaurus:Metacarpal_Bone_Digit_5
xref: SCTID:263402008
property_value: "ray_number" "5" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "Dumb-bell shaped bones of endochondral origin with cartilaginous epiphyses that articulates with carpal 5(4) proximally and with the proximal phalanx of digit V(IV) distally.[AAO]" xsd:string
is_a: UBERON:0002374 ! metacarpal bone
relationship: distally_connected_to UBERON:0004331
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: distally_connected_to UBERON:0004331 ! proximal phalanx of hand digit 5
relationship: develops_from UBERON:0010574 ! finger 5 metacarpus cartilage condensation
relationship: distally_connected_to UBERON:0004331 ! proximal phalanx of hand digit 5
[Term]
id: UBERON:0003650
name: metatarsal bone of digit 1
synonym: "first metatarsal bone" EXACT [FMA:24502]
synonym: "foot digit 1 metatarsal bone" EXACT [OBOL:automatic]
synonym: "hallux metatarsal bone" EXACT [OBOL:automatic]
synonym: "metatarsal 1" EXACT []
synonym: "metatarsal bone digit 1" EXACT [MA:0001369]
synonym: "metatarsal bone of foot digit 1" EXACT [OBOL:automatic]
synonym: "metatarsal bone of hallux" EXACT [OBOL:automatic]
synonym: "metatarsal I" EXACT [AAO:0000925]
synonym: "toe 1 metatarsal" EXACT []
synonym: "toe 1 metatarsus" EXACT []
xref: AAO:0000925
xref: EMAPA:19123
xref: FMA:24502
xref: MA:0001369
xref: ncithesaurus:Metatarsal_Bone_Digit_1
xref: SCTID:182121005
property_value: "ray_number" "1" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with the prepollex and tarsal 1 proximally and with the proximal phalanx of digit I distally.[AAO]" xsd:string
is_a: UBERON:0001448 ! metatarsal bone
relationship: distally_connected_to UBERON:0004332
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: distally_connected_to UBERON:0004332 ! proximal phalanx of foot digit 1
relationship: develops_from UBERON:0010557 ! toe 1 metatarsal cartilage condensation
relationship: distally_connected_to UBERON:0004332 ! proximal phalanx of foot digit 1
[Term]
id: UBERON:0003651
name: metatarsal bone of digit 2
synonym: "foot digit 2 metatarsal bone" EXACT [OBOL:automatic]
synonym: "metatarsal 2" EXACT []
synonym: "metatarsal bone digit 2" EXACT [MA:0001370]
synonym: "metatarsal bone of foot digit 2" EXACT [OBOL:automatic]
synonym: "metatarsal II" EXACT [AAO:0000926]
synonym: "second metatarsal bone" EXACT [FMA:24503]
synonym: "toe 2 metatarsal" EXACT []
synonym: "toe 2 metatarsus" EXACT []
xref: AAO:0000926
xref: EMAPA:19125
xref: FMA:24503
xref: MA:0001370
xref: ncithesaurus:Metatarsal_Bone_Digit_2
xref: SCTID:182128004
property_value: "ray_number" "2" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 2 proximally and with the proximal phalanx of digit II distally.[AAO]" xsd:string
is_a: UBERON:0001448 ! metatarsal bone
relationship: distally_connected_to UBERON:0004333
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: distally_connected_to UBERON:0004333 ! proximal phalanx of foot digit 2
relationship: develops_from UBERON:0010558 ! toe 2 metatarsal cartilage condensation
relationship: distally_connected_to UBERON:0004333 ! proximal phalanx of foot digit 2
[Term]
id: UBERON:0003652
name: metatarsal bone of digit 3
synonym: "foot digit 3 metatarsal bone" EXACT [OBOL:automatic]
synonym: "metatarsal 3" EXACT []
synonym: "metatarsal bone digit 3" EXACT [MA:0001371]
synonym: "metatarsal bone of foot digit 3" EXACT [OBOL:automatic]
synonym: "metatarsal III" EXACT [AAO:0000927]
synonym: "third metatarsal bone" EXACT [FMA:24504]
synonym: "toe 3 metatarsal" EXACT []
synonym: "toe 3 metatarsus" EXACT []
xref: AAO:0000927
xref: EMAPA:19127
xref: FMA:24504
xref: MA:0001371
xref: ncithesaurus:Metatarsal_Bone_Digit_3
xref: SCTID:182134006
property_value: "ray_number" "3" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 3 proximally and with the proximal phalanx of digit III distally.[AAO]" xsd:string
is_a: UBERON:0001448 ! metatarsal bone
relationship: distally_connected_to UBERON:0004334
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: distally_connected_to UBERON:0004334 ! proximal phalanx of foot digit 3
relationship: develops_from UBERON:0010559 ! toe 3 metatarsal cartilage condensation
relationship: distally_connected_to UBERON:0004334 ! proximal phalanx of foot digit 3
[Term]
id: UBERON:0003653
name: metatarsal bone of digit 4
synonym: "foot digit 4 metatarsal bone" EXACT [OBOL:automatic]
synonym: "fourth metatarsal bone" EXACT [FMA:24505]
synonym: "metatarsal 4" EXACT []
synonym: "metatarsal bone digit 4" EXACT [MA:0001372]
synonym: "metatarsal bone of foot digit 4" EXACT [OBOL:automatic]
synonym: "metatarsal IV" EXACT [AAO:0000928]
synonym: "toe 4 metatarsal" EXACT []
synonym: "toe 4 metatarsus" EXACT []
xref: AAO:0000928
xref: EMAPA:19129
xref: FMA:24505
xref: MA:0001372
xref: ncithesaurus:Metatarsal_Bone_Digit_4
xref: SCTID:182139001
property_value: "ray_number" "4" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 4 or the distal head of the tibiale-fibulare proximally and with the proximal phalanx of digit IV distally.[AAO]" xsd:string
is_a: UBERON:0001448 ! metatarsal bone
relationship: distally_connected_to UBERON:0004335
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: distally_connected_to UBERON:0004335 ! proximal phalanx of foot digit 4
relationship: develops_from UBERON:0010560 ! toe 4 metatarsal cartilage condensation
relationship: distally_connected_to UBERON:0004335 ! proximal phalanx of foot digit 4
[Term]
id: UBERON:0003654
name: metatarsal bone of digit 5
synonym: "fifth metatarsal bone" EXACT [FMA:24506]
synonym: "foot digit 5 metatarsal bone" EXACT [OBOL:automatic]
synonym: "metatarsal 5" EXACT []
synonym: "metatarsal bone digit 5" EXACT [MA:0001373]
synonym: "metatarsal bone of foot digit 5" EXACT [OBOL:automatic]
synonym: "metatarsal V" EXACT [AAO:0000929]
synonym: "toe 5 metatarsal" EXACT []
synonym: "toe 5 metatarsus" EXACT []
xref: AAO:0000929
xref: EMAPA:19131
xref: FMA:24506
xref: MA:0001373
xref: ncithesaurus:Metatarsal_Bone_Digit_5
xref: SCTID:182144008
property_value: "ray_number" "5" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "Dumb-bell-shaped bone of endochondral origin with cartilaginous epiphyses that articulates with tarsal 5 or the distal head of the tibiale-fibulare proximally and with the proximal phalanx of digit V distally.[AAO]" xsd:string
is_a: UBERON:0001448 ! metatarsal bone
relationship: distally_connected_to UBERON:0004336
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: distally_connected_to UBERON:0004336 ! proximal phalanx of foot digit 5
relationship: develops_from UBERON:0010561 ! toe 5 metatarsal cartilage condensation
relationship: distally_connected_to UBERON:0004336 ! proximal phalanx of foot digit 5
[Term]
id: UBERON:0003655
name: molar tooth
def: "Molars are the rearmost and most complicated kind of tooth in most mammals." [Wikipedia:Molar_(tooth)]
comment: Adult humans have twelve molars, in four groups of three at the back of the mouth. The third, rearmost molar in each group is called a wisdom tooth. It is the last tooth to appear, breaking through the surface of the gum at about the age of twenty, although this varies from individual to individual. Ethnicity can also have an impact on the age at which this occurs, with statistical variations between groups. The human mouth contains upper (maxillary) and lower (mandibular) molars. They are: maxillary first molar, maxillary second molar, maxillary third molar, mandibular first molar, mandibular second molar, and mandibular third molar.
synonym: "dens molaris" EXACT [Wikipedia:Molar_%28tooth%29]
synonym: "molar" EXACT [MA:0000350]
synonym: "molaris" EXACT [BTO:0001759]
xref: BTO:0001759
xref: FMA:55638
xref: MA:0000350
xref: MESH:A.14.254.860.525
xref: ncithesaurus:Molar_Tooth
xref: SCTID:362115002
is_a: UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003656
name: mesopodium bone
def: "A bone that is part of a mesopodium skeleton[cjm]. The carpus (wrist) and tarsus (ankle) of land vertebrates primitively had three rows of carpal or tarsal bones. Often some of these have become lost or fused in evolution. Three proximals. In the hand humans has all three. In the foot the middle proximal appears in 5-15% of people as an os trigonum. Centrale or os centrale, on the medial side. In humans and our closest relatives the African apes (chimpanzees and gorillas) it fuses to the scaphoid where it forms the articulation with the trapezoid bone; occasionally it stays separate. In Man's foot it is the navicular. Some early land vertebrates had more than one (up to three) os centrale per hand or foot. Distals, one per finger / toe at the base of each metacarpal or metatarsal. In mammals the 4th and 5th fuse. In the horse the 1st is lost[WP]." [UBERON:cjm, Wikipedia:Carpus_and_tarsus_of_land_vertebrates]
synonym: "basipodium bone" EXACT [MA:th]
synonym: "carpal/tarsal bone" EXACT [MA:0000295]
synonym: "mesopodium bone" EXACT []
xref: MA:0000295
is_a: UBERON:0011250 ! autopod bone
relationship: part_of UBERON:0006716
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0006716 ! mesopodium region
relationship: part_of UBERON:0006716 ! mesopodium region
relationship: part_of UBERON:0009878 ! mesopodium skeleton
[Term]
id: UBERON:0003657
name: limb joint
def: "Any joint that is part of a (free) limb." [UBERON:cjm]
comment: Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses
subset: grouping_class
synonym: "joint of limb" EXACT []
synonym: "joint of limb skeletal system" EXACT [Obol:automatic]
synonym: "skeletal limb joint" EXACT [GO:0036023]
xref: EMAPA:19204
xref: galen:LimbJoint
xref: MA:0000691
xref: SCTID:312683002
is_a: UBERON:0000982 ! skeletal joint
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002101
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003658
name: hip muscle
def: "A muscle organ that is part of a hip [Obol]." [OBOL:automatic]
synonym: "hip muscle organ" EXACT [OBOL:automatic]
synonym: "hip region muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of hip" EXACT [OBOL:automatic]
synonym: "muscle organ of hip region" EXACT [OBOL:automatic]
synonym: "muscle organ of regio coxae" EXACT [OBOL:automatic]
synonym: "regio coxae muscle organ" EXACT [OBOL:automatic]
xref: MA:0000657
is_a: UBERON:0010890 ! pelvic complex muscle
relationship: part_of UBERON:0001464
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0003659
name: foot digit muscle
def: "A muscle organ that is part of a toe [Obol]." [OBOL:automatic]
synonym: "digit of foot muscle organ" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb muscle organ" EXACT [OBOL:automatic]
synonym: "digitus pedis muscle organ" EXACT [OBOL:automatic]
synonym: "foot digit muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of digit of foot" EXACT [OBOL:automatic]
synonym: "muscle organ of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "muscle organ of digitus pedis" EXACT [OBOL:automatic]
synonym: "muscle organ of foot digit" EXACT [OBOL:automatic]
synonym: "muscle organ of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "muscle organ of toe" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit muscle organ" EXACT [OBOL:automatic]
synonym: "toe muscle organ" EXACT [OBOL:automatic]
xref: MA:0000648
is_a: UBERON:0001498 ! muscle of foot
relationship: part_of UBERON:0001466
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit
[Term]
id: UBERON:0003660
name: eyelid muscle
def: "A muscle organ that is part of a eyelid [Obol]." [OBOL:automatic]
synonym: "blepharon muscle organ" EXACT [OBOL:automatic]
synonym: "eyelid muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of blepharon" EXACT [OBOL:automatic]
synonym: "muscle organ of eyelid" EXACT [OBOL:automatic]
xref: MA:0000269
xref: ncithesaurus:Eyelid_Muscle
is_a: UBERON:0004253 ! skin muscle
is_a: UBERON:0004277 ! eye muscle
relationship: part_of UBERON:0001711
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001711 ! eyelid
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0003661
name: limb muscle
def: "A muscle organ that is part of a limb [Obol]." [OBOL:automatic]
synonym: "limb muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of limb" EXACT [OBOL:automatic]
xref: MA:0000692
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002101
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003662
name: forelimb muscle
alt_id: UBERON:0005634
comment: AO notes: FMA and MA class actually refer to muscles of entire pectoral complex
synonym: "arm muscle system" EXACT [EHDAA2:0000141]
synonym: "fore limb muscle organ" EXACT [OBOL:automatic]
synonym: "forelimb muscle organ" EXACT [OBOL:automatic]
synonym: "muscle of free upper limb" EXACT [FMA:37348]
synonym: "muscle of upper limb" EXACT [FMA:9621]
synonym: "musculature of arm" RELATED PLURAL []
synonym: "musculature of the arm" RELATED PLURAL []
synonym: "wing muscle" NARROW SENSU [Geisha:syn]
xref: AAO:0000204
xref: BTO:0000479
xref: FMA:37348
is_a: UBERON:0003661 ! limb muscle
is_a: UBERON:0010891 ! pectoral complex muscle
relationship: part_of UBERON:0002102
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003663
name: hindlimb muscle
def: "A muscle organ that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "free lower limb muscle" EXACT [FMA:37368]
synonym: "hind limb muscle organ" EXACT [OBOL:automatic]
synonym: "hindlimb muscle organ" EXACT [OBOL:automatic]
synonym: "inferior member muscle organ" EXACT [OBOL:automatic]
synonym: "lower extremity muscle organ" EXACT [OBOL:automatic]
synonym: "muscle of posterior limb" EXACT [UBERON:cjm]
synonym: "muscle organ of hind limb" EXACT [OBOL:automatic]
synonym: "muscle organ of hindlimb" EXACT [OBOL:automatic]
synonym: "muscle organ of inferior member" EXACT [OBOL:automatic]
synonym: "muscle organ of lower extremity" EXACT [OBOL:automatic]
xref: AAO:0000222
xref: EFO:0001928
xref: FMA:37368
is_a: UBERON:0003661 ! limb muscle
is_a: UBERON:0010890 ! pelvic complex muscle
relationship: part_of UBERON:0002103
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003664
name: hand digit muscle
def: "A muscle organ that is part of a finger [Obol]." [OBOL:automatic]
synonym: "digit of hand muscle organ" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
synonym: "digitus manus muscle organ" EXACT [OBOL:automatic]
synonym: "finger muscle organ" EXACT [OBOL:automatic]
synonym: "hand digit muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of digit of hand" EXACT [OBOL:automatic]
synonym: "muscle organ of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "muscle organ of digitus manus" EXACT [OBOL:automatic]
synonym: "muscle organ of finger" EXACT [OBOL:automatic]
synonym: "muscle organ of hand digit" EXACT [OBOL:automatic]
synonym: "muscle organ of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit muscle organ" EXACT [OBOL:automatic]
xref: MA:0000624
is_a: UBERON:0001500 ! muscle of hand
relationship: part_of UBERON:0002389
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit
[Term]
id: UBERON:0003665
name: tail muscle
def: "A muscle organ that is part of a tail [Obol]." [OBOL:automatic]
synonym: "caudal muscle" EXACT []
synonym: "muscle organ of post-vent region" EXACT [OBOL:automatic]
synonym: "muscle organ of tail" EXACT [OBOL:automatic]
synonym: "post-vent region muscle organ" EXACT [OBOL:automatic]
synonym: "tail muscle organ" EXACT [OBOL:automatic]
xref: AAO:0000081
xref: BTO:0001905
xref: MA:0000699
xref: SCTID:113230005
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0007812
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0007812 ! post-anal tail
relationship: part_of UBERON:0007812 ! post-anal tail
[Term]
id: UBERON:0003666
name: upper jaw molar
def: "A molar tooth that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "molar tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "molar tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch molar tooth" EXACT [OBOL:automatic]
synonym: "upper jaw molar tooth" EXACT [OBOL:automatic]
synonym: "upper primary molar tooth" EXACT [FMA:84210]
xref: EHDAA2:0002125
xref: EHDAA:8053
xref: EMAPA:17942
xref: FMA:55720
xref: MA:0001603
xref: ncithesaurus:Upper_Jaw_Molar
xref: SCTID:422318005
is_a: UBERON:0003267 ! tooth of upper jaw
is_a: UBERON:0003655 ! molar tooth
relationship: part_of UBERON:0001709
intersection_of: UBERON:0003655 ! molar tooth
intersection_of: part_of UBERON:0001709 ! upper jaw region
relationship: part_of UBERON:0001709 ! upper jaw region
[Term]
id: UBERON:0003667
name: lower jaw molar
def: "A molar tooth that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "lower jaw molar tooth" EXACT [OBOL:automatic]
synonym: "lower primary molar tooth" NARROW [FMA:84213]
synonym: "molar tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "molar tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch molar tooth" EXACT [OBOL:automatic]
xref: EHDAA2:0001025
xref: EHDAA:8017
xref: EMAPA:17921
xref: FMA:55721
xref: MA:0001602
xref: ncithesaurus:Lower_Jaw_Molar
xref: SCTID:421482001
is_a: UBERON:0003268 ! tooth of lower jaw
is_a: UBERON:0003655 ! molar tooth
relationship: part_of UBERON:0001710
intersection_of: UBERON:0003655 ! molar tooth
intersection_of: part_of UBERON:0001710 ! lower jaw region
relationship: part_of UBERON:0001710 ! lower jaw region
[Term]
id: UBERON:0003668
name: synovial bursa
def: "a small fluid-filled sac lined by synovial membrane with an inner capillary layer of slimy fluid. It provides a cushion between bones and tendons and/or muscles around a joint. This helps to reduce friction between the bones and allows free movement. Bursae are filled with synovial fluid and are found around most major joints of the body." [Wikipedia:Synovial_bursa]
subset: organ_slim
synonym: "bursa" BROAD [FMA:9692]
synonym: "bursa synovialis" RELATED LATIN [Wikipedia:Synovial_bursa]
xref: FMA:9692
xref: GAID:252
xref: galen:Bursa
xref: http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray350.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray350.png/200px-Gray350.png
xref: MESH:A.02.835.583.156
xref: ncithesaurus:Synovial_Bursa
xref: SCTID:182483003
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0003669
name: fascia lata
def: "The fascia lata is the deep fascia of the thigh. [WP,unvetted]." [Wikipedia:Fascia_lata]
xref: FMA:13902
xref: GAID:117
xref: http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray431.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e7/Gray431.png/200px-Gray431.png
xref: MESH:A.02.340.424
xref: ncithesaurus:Fascia_Lata
xref: SCTID:361911008
is_a: UBERON:0004266 ! upper leg connective tissue
is_a: UBERON:0011236 ! deep fascia
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0003670
name: smegma
def: "a combination of exfoliated (shed) epithelial cells, transudated skin oils, and moisture. It occurs in both female and male mammalian genitalia[WP]." [Wikipedia:Smegma]
xref: FMA:19656
xref: GAID:1170
xref: MESH:A.12.200.769
xref: ncithesaurus:Smegma
is_a: UBERON:0000456 ! bodily secretion
[Term]
id: UBERON:0003671
name: anterior cruciate ligament of knee joint
synonym: "anterior cruciate ligament" EXACT [FMA:44614]
xref: FMA:44614
xref: GAID:122
xref: galen:AnteriorCruciateLigament
xref: MESH:A.02.513.514.100
xref: ncithesaurus:Anterior_Cruciate_Ligament
xref: OpenCyc:Mx4r77KC8RuaEd2f4ADggVfexA
xref: SCTID:182443006
is_a: UBERON:0006659 ! cruciate ligament of knee
[Term]
id: UBERON:0003672
name: dentition
comment: In FMA this is an anatomical set
synonym: "dentes" EXACT [FMA:75150, FMA:TA]
synonym: "set of teeth" EXACT [FMA:75150]
synonym: "teeth" EXACT [FMA:75150]
synonym: "teeth" RELATED []
synonym: "teeth set" EXACT [FMA:75150]
xref: AAO:0000126
xref: FMA:75150
xref: GAID:1249
xref: MESH:A.14.254
xref: ncithesaurus:Dentition
xref: OpenCyc:Mx4rvVi65JwpEbGdrcN5Y29ycA
xref: SCTID:245543004
property_value: UBPROP:0000001 "Dentition refers to set of teeth, especially with regard to their number, kind, and arrangement, in the mouth.[AAO]" xsd:string
is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_part UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0000165 {source="FMA"} ! mouth
relationship: part_of UBERON:0010323 ! cranial skeletal system
[Term]
id: UBERON:0003673
name: ligamentum flavum
synonym: "flaval ligament" RELATED [GAID:126]
xref: FMA:13423
xref: GAID:126
xref: MESH:A.02.513.514.287
xref: ncithesaurus:Ligamentum_Flavum
xref: SCTID:244598002
is_a: UBERON:0000211 ! ligament
[Term]
id: UBERON:0003674
name: cuspid
def: "In mammalian oral anatomy, the canine teeth, also called cuspids, dogteeth, fangs, or (in the case of those of the upper jaw) eye teeth, are relatively long, pointed teeth. However, they can appear more flattened, causing them to resemble incisors and leading them to be called incisiform. They evolved and are used primarily for firmly holding food in order to tear it apart, and occasionally as weapons. They are often the largest teeth in a mammal's mouth. Most species that develop them normally have four per individual, two in the upper jaw and two in the lower, separated within each jaw by its incisors; humans and dogs are examples. In most animals, canines are the anterior-most teeth in the maxillary bone. The four canines in humans are the two maxillary canines and the two mandibular canines." [Wikipedia:Canine_tooth]
synonym: "canine %28tooth%29" RELATED [Wikipedia:Canine_tooth]
synonym: "canine eminence" RELATED [Wikipedia:Canine_tooth]
synonym: "canine teeth" RELATED PLURAL [Wikipedia:Canine_tooth]
synonym: "canine teeth" RELATED [GAID:1262]
synonym: "canine tooth" RELATED [GAID:1262]
synonym: "cuspid" EXACT [FMA:55636]
synonym: "cuspis dentis" EXACT [FMA:55636, FMA:TA]
synonym: "dens caninus" RELATED [Wikipedia:Canine_tooth]
synonym: "dentes canini" RELATED LATIN [Wikipedia:Canine_tooth]
synonym: "dogtooth %28anatomy%29" RELATED [Wikipedia:Canine_tooth]
synonym: "eye teeth" RELATED PLURAL [Wikipedia:Canine_tooth]
synonym: "eye tooth" RELATED [Wikipedia:Canine_tooth]
synonym: "eyeteeth" RELATED PLURAL [Wikipedia:Canine_tooth]
synonym: "eyetooth" RELATED [Wikipedia:Canine_tooth]
synonym: "fang" RELATED [Wikipedia:Canine_tooth]
xref: FMA:55636
xref: GAID:1262
xref: http://upload.wikimedia.org/wikipedia/commons/5/57/Azawakh_K9.jpg
xref: MESH:A.14.254.860.200
xref: ncithesaurus:Canine_Tooth
xref: SCTID:88719004
is_a: UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003675
name: tooth crown
synonym: "anatomical crown" EXACT [FMA:55623]
synonym: "corona dentis" EXACT [ncithesaurus:Corona_Dentis]
synonym: "crown" RELATED []
synonym: "crown of tooth" EXACT [FMA:55623]
synonym: "tooth crown" EXACT [FMA:55623]
xref: FMA:55623
xref: GAID:1275
xref: MESH:A.14.254.900.710
xref: ncithesaurus:Corona_Dentis
xref: SCTID:362106009
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003676
name: patellar ligament
def: "The central portion of the common tendon of the quadriceps femoris. It is attached to the apex of the PATELLA and to the lower part of the tubercle of the TIBIA." [MESH:A.02.513.514.475, Wikipedia:Patellar_ligament]
synonym: "central band of tendon of quadriceps femoris" EXACT [FMA:44581]
synonym: "ligamentum patella" EXACT [FMA:44581]
synonym: "patellar tendon" RELATED []
xref: EMAPA:18509
xref: EMAPA:19139
xref: FMA:44581
xref: GAID:128
xref: galen:LigamentumPatellae
xref: MESH:A.02.513.514.475
xref: ncithesaurus:Patellar_Ligament
xref: SCTID:244639004
is_a: UBERON:0011088 ! ligament of knee joint
relationship: connects UBERON:0000979 ! tibia
relationship: connects UBERON:0002446 ! patella
relationship: part_of UBERON:0001485 {source="FMA"} ! knee joint
[Term]
id: UBERON:0003677
name: tooth root
synonym: "radix corona" EXACT [FMA:55624]
synonym: "root of tooth" EXACT [FMA:55624]
synonym: "tooth root" EXACT [FMA:55624]
xref: FMA:55624
xref: GAID:1280
xref: MESH:A.14.254.900.750
xref: SCTID:245728004
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: attaches_to UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003678
name: tooth apex
synonym: "apex of tooth" EXACT [FMA:63000]
synonym: "apical foramen" RELATED [GAID:1281]
synonym: "tooth apex" EXACT [FMA:63000]
synonym: "tooth apice" RELATED [GAID:1281]
xref: FMA:63000
xref: GAID:1281
xref: MESH:A.14.254.900.750.700
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003679
name: mouth floor
synonym: "floor of mouth" EXACT [FMA:86592]
synonym: "sublingual region" RELATED [GAID:1283]
xref: EFO:0001923
xref: FMA:86592
xref: GAID:1283
xref: MESH:A.14.549.441
xref: ncithesaurus:Floor_of_the_Mouth
xref: SCTID:245786002
is_a: UBERON:0001444 ! subdivision of head
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0003680
name: posterior cruciate ligament of knee joint
synonym: "posterior cruciate ligament" EXACT [FMA:44617]
xref: FMA:44617
xref: GAID:129
xref: galen:PosteriorCruciateLigament
xref: MESH:A.02.513.514.600
xref: ncithesaurus:Posterior_Cruciate_Ligament
xref: SCTID:182445004
is_a: UBERON:0006659 ! cruciate ligament of knee
[Term]
id: UBERON:0003681
name: masticatory muscle
def: "In humans: Muscles arising in the zygomatic arch that close the jaw. Their nerve supply is masseteric from the mandibular division of the trigeminal nerve. (From Stedman, 25th ed)" [MESH:A.02.633.567.600, Wikipedia:Muscles_of_mastication]
comment: Usage notes: we use this specifically for a jaw muscle that is innervates by the mandibular nerve. Development notes: Masticatory muscles (MM) originate from the somitomeres. These muscles develop late and are not complete even at birth. Tongue muscles develop before masticatory muscles and complete by birth [http://php.med.unsw.edu.au/embryology]
synonym: "jaw muscle" RELATED []
synonym: "muscle of mastication" EXACT []
synonym: "musculi masticatorii" RELATED [Wikipedia:Muscles_of_mastication]
synonym: "musculi masticatorii" RELATED LATIN [Wikipedia:Muscles_of_mastication]
xref: FMA:74060
xref: GAID:145
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray781.png
xref: MESH:A.02.633.567.600
xref: ncithesaurus:Muscle_of_the_Mastication
xref: SCTID:244769003
is_a: UBERON:0011648 ! jaw muscle
relationship: develops_from UBERON:0004362 {source="Wikipedia"} ! pharyngeal arch 1
relationship: has_muscle_nerve UBERON:0000375 {source="dbpedia"} ! mandibular nerve
relationship: has_part UBERON:0001134 {source="MESH"} ! skeletal muscle tissue
[Term]
id: UBERON:0003682
name: palatal muscle
def: "The muscles of the palate are the glossopalatine, palatoglossus, levator palati(ni), musculus uvulae, palatopharyngeus, and tensor palati(ni)." [MESH:A.02.633.567.750, Wikipedia:Muscles_of_soft_palate_and_fauces]
comment: Editor notes: consider extra class for fauces. AO notes: see also FMA:71438
synonym: "muscle of palate" EXACT [FMA:46726]
synonym: "musculi palati mollis et faucium" EXACT []
synonym: "musculi palati mollis et faucium" RELATED LATIN [Wikipedia:Muscles_of_soft_palate_and_fauces]
synonym: "palatal muscle" EXACT [FMA:46726]
synonym: "palate muscle" EXACT [FMA:46726]
synonym: "palatine muscle" EXACT [FMA:46726]
xref: FMA:46726
xref: GAID:151
xref: http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray1028.png
xref: MESH:A.02.633.567.750
xref: ncithesaurus:Palatal_Muscle
xref: SCTID:244794002
xref: SCTID:73711005
is_a: UBERON:0002376 ! muscle of head
relationship: has_muscle_nerve UBERON:0001759 {source="dbpedia", notes="Vagus except tensor veli palatini"} ! vagus nerve
[Term]
id: UBERON:0003683
name: rotator cuff
def: "a group of muscles and their tendons that act to stabilize the shoulder. The four muscles of the rotator cuff are over half of the seven scapulohumeral muscles" [Wikipedia:Rotator_cuff]
synonym: "musculotendinous cuff" EXACT [FMA:37018]
synonym: "rotator cuff" EXACT [FMA:37018]
synonym: "tendinous cuff" EXACT [FMA:37018]
xref: FMA:37018
xref: GAID:160
xref: MESH:A.02.633.567.912
xref: ncithesaurus:Rotator_Cuff
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003684
name: abdominal cavity
def: "body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron)." [Wikipedia:Abdominal_cavity]
synonym: "cavitas abdominis" RELATED [GAID:17]
synonym: "cavitas abdominis" RELATED LATIN [Wikipedia:Abdominal_cavity]
synonym: "cavity of abdominal compartment" EXACT [FMA:12266]
synonym: "cavity of compartment of abdomen" EXACT [FMA:12266]
synonym: "space of abdominal compartment" EXACT [FMA:12266]
xref: EFO:0000213
xref: FMA:12266
xref: GAID:17
xref: galen:AbdominalCavity
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png
xref: MESH:A.01.047.025
xref: ncithesaurus:Abdominal_Cavity
xref: OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA
xref: SCTID:361294009
is_a: UBERON:0002323 ! body cavity
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003685
name: cranial suture
def: "Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture." [FMA:71385, ISBN:3110148986, Wikipedia:Suture]
subset: uberon_slim
synonym: "cranium suture" EXACT [OBOL:automatic]
synonym: "suture" EXACT [FMA:71385]
synonym: "suture joint of skull" EXACT [SCTID:244509003]
synonym: "suture of cranium" EXACT [OBOL:automatic]
xref: FMA:7493
xref: GAID:211
xref: MA:0001475
xref: MESH:A.02.835.232.781.200
xref: SCTID:244509003
is_a: UBERON:0009198 {source="GO"} ! craniofacial suture
relationship: part_of UBERON:0003128
intersection_of: UBERON:0002209 ! fibrous joint
intersection_of: part_of UBERON:0003128 ! cranium
relationship: induced_by UBERON:0002363 {source="PMID:16496288"} ! dura mater
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0003686
name: tooth socket
def: "Dental alveolus (plural, alveoli) are sockets in the jaws in which the roots of teeth are held in the alveolar process of maxilla with the periodontal ligament. The lay term for dental alveoli is tooth sockets. A joint that connect the roots of the teeth and the alveolus are called gomphosis (plural gomphoses). In mammals, tooth sockets are found in the maxilla and the mandible. [WP,unvetted]." [Wikipedia:Dental_alveolus]
synonym: "alveolus dentali" RELATED [GAID:217]
synonym: "alveolus dentalis" RELATED [GAID:217]
synonym: "alveolus dentalis" RELATED LATIN [Wikipedia:Dental_alveolus]
synonym: "dental alveolus" EXACT [FMA:57490]
synonym: "dental alveolus" RELATED [GAID:217]
xref: FMA:57490
xref: GAID:217
xref: http://upload.wikimedia.org/wikipedia/commons/2/2e/Alveole_zahn.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Alveole_zahn.jpg/200px-Alveole_zahn.jpg
xref: MESH:A.02.835.232.781.324.502.125.800
xref: ncithesaurus:Tooth_Socket
xref: SCTID:288323008
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0004103 {source="MESH-modified"} ! alveolar ridge
[Term]
id: UBERON:0003687
name: foramen magnum
def: "In anatomy, in the occipital bone, the foramen magnum is one of the several oval or circular apertures in the base of the skull, through which the medulla oblongata (an extension of the spinal cord) enters and exits the skull vault. Apart from the transmission of the medulla oblongata and its membranes, the foramen magnum transmits the Spinal Accessory nerve, vertebral arteries, the anterior and posterior spinal arteries, the membrana tectoria and alar ligaments. [WP,unvetted]." [Wikipedia:Foramen_magnum]
subset: vertebrate_core
xref: AAO:0010826
xref: FMA:75306
xref: GAID:228
xref: http://upload.wikimedia.org/wikipedia/commons/3/39/Gray130.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/39/Gray130.png/200px-Gray130.png
xref: MESH:A.02.835.232.781.572.434
xref: ncithesaurus:Foramen_Magnum
xref: OpenCyc:Mx4rwOm-FpwpEbGdrcN5Y29ycA
xref: SCTID:244679008
xref: TAO:0002045
xref: ZFA:0005387
property_value: UBPROP:0000001 "Foramen in the occipital region of neurocranium to allow passage of spinal cord.[TAO]" xsd:string
is_a: UBERON:0005744 ! cranial conduit
relationship: surrounded_by UBERON:0001676 ! occipital bone
[Term]
id: UBERON:0003688
name: omentum
xref: EV:0100084
xref: FMA:14650
xref: GAID:23
xref: galen:Omentum
xref: MESH:A.01.047.025.600.573
xref: ncithesaurus:Omentum
xref: SCTID:362710002
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001178 ! visceral peritoneum
[Term]
id: UBERON:0003689
name: sella turcica
def: "The sella turcica is a saddle-shaped depression in the sphenoid bone at the base of the human skull. [WP,unvetted]." [Wikipedia:Sella_turcica]
comment: Editor notes: for consistency with FMA we have a separate class for the cavity of the sella turcica
synonym: "suprasellar" RELATED [Wikipedia:Sella_turcica]
synonym: "Turkey Chair" RELATED LATIN [Wikipedia:Sella_turcica]
synonym: "turkish saddle" RELATED [Wikipedia:Sella_turcica]
xref: FMA:54709
xref: GAID:231
xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray145.png/200px-Gray145.png
xref: MESH:A.02.835.232.781.802.662
xref: ncithesaurus:Sella_Turcica
xref: SCTID:368554001
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0009639 {source="FMA"} ! body of sphenoid
[Term]
id: UBERON:0003690
name: sacrum
def: "The sacrum is a large, triangular bone at the base of the spine and at the upper and back part of the pelvic cavity, where it is inserted like a wedge between the two hip bones. Its upper part connects with the last lumbar vertebra, and bottom part with the coccyx (tailbone). In children, it consists of usually five unfused vertebrae which begin to fuse between ages 16-18 and are usually completely fused into a single bone by age 26. It is curved upon itself and placed obliquely (that is, tilted forward). It is kyphotic — that is, concave facing forwards. The base projects forward as the sacral promontory internally, and articulates with the last lumbar vertebra to form the prominent sacrovertebral angle. The central part is curved outward towards the posterior, allowing greater room for the pelvic cavity. [WP,unvetted]." [Wikipedia:Sacrum]
synonym: "os sacrum" RELATED LATIN [Wikipedia:Sacrum]
synonym: "os sacrum" RELATED [Wikipedia:Sacrum]
synonym: "os sacrum [vertebrae sacrales i - v]" EXACT [FMA:16202, FMA:TA]
synonym: "sacral bone" RELATED [FMA:16202]
synonym: "sacrum [sacral vertebrae i - v]" EXACT [FMA:16202]
synonym: "sacrum [sacral vertebrae I-V]" EXACT [FMA:16202]
xref: AAO:0000552
xref: EFO:0003071
xref: FMA:16202
xref: GAID:241
xref: galen:Sacrum
xref: http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray95.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ec/Gray95.png/200px-Gray95.png
xref: MESH:A.02.835.232.834.717
xref: ncithesaurus:Sacrum
xref: OpenCyc:Mx4rvmBKnJwpEbGdrcN5Y29ycA
xref: SCTID:264186006
property_value: "has_fused_element" UBERON:0001094
property_value: UBPROP:0000001 "Enlarged vertebra with transverse processes (diapophyses), and ocassionally ribs, that are modified and elaborated for support of the pelvic girdle.[AAO]" xsd:string
is_a: UBERON:0003828 ! abdominal segment bone
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005179 ! pelvis organ
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: anteriorly_connected_to UBERON:0004621 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! lumbar vertebra 5
relationship: part_of UBERON:0001130 {source="FMA"} ! vertebral column
relationship: part_of UBERON:0001270 {source="FMA"} ! bony pelvis
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0005473 {source="FMA"} ! sacral region
[Term]
id: UBERON:0003691
name: epidural space
synonym: "extradural space" EXACT [FMA:71228]
synonym: "spatium extradurale" EXACT [FMA:71228, FMA:TA]
xref: FMA:71228
xref: GAID:243
xref: MESH:A.02.835.232.834.803.350
xref: SCTID:281866004
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0003692
name: acromioclavicular joint
def: "The gliding joint formed by the outer extremity of the clavicle and the inner margin of the acromion process of the scapula." [MESH:A.02.835.583.032, Wikipedia:Acromioclavicular_joint]
synonym: "acromioclavicular articulation" RELATED [Wikipedia:Acromioclavicular_joint]
synonym: "articulatio acromioclavicularis" RELATED LATIN [Wikipedia:Acromioclavicular_joint]
synonym: "scapuloclavicular articulation" RELATED [Wikipedia:Acromioclavicular_joint]
xref: FMA:25898
xref: GAID:249
xref: http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray326.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Gray326.png/200px-Gray326.png
xref: MESH:A.02.835.583.032
xref: ncithesaurus:Acromioclavicular_Joint
xref: OpenCyc:Mx4rwHhmSJwpEbGdrcN5Y29ycA
xref: SCTID:182166001
is_a: UBERON:0011108 {source="FMA"} ! synovial joint of pectoral girdle
relationship: connects UBERON:0001105
relationship: connects UBERON:0006849
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001105 ! clavicle
intersection_of: connects UBERON:0006849 ! scapula
relationship: connects UBERON:0001105 ! clavicle
relationship: connects UBERON:0006849 ! scapula
relationship: part_of UBERON:0001467 {source="FMA"} ! shoulder
[Term]
id: UBERON:0003693
name: retroperitoneal space
def: "anatomical space in the abdominal cavity behind (retro) the peritoneum. It has no specific delineating anatomical structures. Organs are retroperitoneal if they only have peritoneum on their anterior side." [Wikipedia:Retroperitoneum]
synonym: "retroperitoneum" EXACT [FMA:15080]
xref: EFO:0002806
xref: FMA:15080
xref: GAID:25
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray1126.png/200px-Gray1126.png
xref: MESH:A.01.047.025.750
xref: ncithesaurus:Retroperitoneum
xref: SCTID:243983004
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0003684 ! abdominal cavity
[Term]
id: UBERON:0003694
name: atlanto-axial joint
def: "The Atlanto-axial joint is of a complicated nature, comprising no fewer than four distinct joints. There is a pivot articulation between the odontoid process of the axis and the ring formed by the anterior arch and the transverse ligament of the atlas." [Wikipedia:Atlanto-axial_joint]
synonym: "articulatio atlantoaxialis" RELATED [Wikipedia:Atlanto-axial_joint]
synonym: "articulatio atlantoepistrophica" RELATED [Wikipedia:Atlanto-axial_joint]
synonym: "atlanto axial joint" EXACT [GAID:250]
synonym: "atlantoaxial" RELATED [Wikipedia:Atlanto-axial_joint]
synonym: "atlantoaxial joint" EXACT [GAID:250]
synonym: "lateral atlanto-axial joint" RELATED [Wikipedia:Atlanto-axial_joint]
synonym: "median atlanto-axial joint" RELATED [Wikipedia:Atlanto-axial_joint]
xref: FMA:25524
xref: GAID:250
xref: http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray304.png
xref: MESH:A.02.835.583.097
xref: ncithesaurus:Atlanto-axial_Joint
xref: OpenCyc:Mx4rwUUIHpwpEbGdrcN5Y29ycA
xref: SCTID:361832004
is_a: UBERON:0000982 ! skeletal joint
relationship: connects UBERON:0001092 ! first cervical vertebra
relationship: connects UBERON:0001093 ! second cervical vertebra
relationship: part_of UBERON:0011138 ! post-cranial axial skeletal system
[Term]
id: UBERON:0003695
name: metacarpophalangeal joint
def: "The metacarpophalangeal joints (MCP) are of the condyloid kind, formed by the reception of the rounded heads of the metacarpal bones into shallow cavities on the proximal ends of the first phalanges, with the exception of that of the thumb, which presents more of the characters of a ginglymoid joint. Arthritis of the MCP is a distinguishing feature of Rheumatoid Arthritis, as opposed to the distal interphalangeal joint in osteoarthritis. [WP,unvetted]." [Wikipedia:Metacarpophalangeal_joint]
comment: we follow FMA in making these joints part of digits
synonym: "articulationes metacarpophalangeae" RELATED LATIN [Wikipedia:Metacarpophalangeal_joint]
synonym: "metacarpal joint" BROAD [FMA:35246]
synonym: "metacarpal phalangeal joint" RELATED [HP:0004294]
synonym: "metacarpo-phalangeal joint" EXACT [MA:0000453]
synonym: "MP joint" EXACT [FMA:35246]
xref: EMAPA:19302
xref: FMA:35246
xref: GAID:255
xref: galen:MetacarpoPhalangealJoint
xref: http://upload.wikimedia.org/wikipedia/commons/5/53/Gray337.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/53/Gray337.png/200px-Gray337.png
xref: MA:0000453
xref: MESH:A.02.835.583.345.512
xref: ncithesaurus:Metacarpophalangeal_Joint
xref: OpenCyc:Mx4rwNt8wJwpEbGdrcN5Y29ycA
xref: SCTID:280995004
is_a: UBERON:0001489 ! joint of hand
relationship: connects UBERON:0002234
relationship: connects UBERON:0002374
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0002234 ! proximal phalanx of finger
intersection_of: connects UBERON:0002374 ! metacarpal bone
relationship: connects UBERON:0002234 ! proximal phalanx of finger
relationship: connects UBERON:0002374 ! metacarpal bone
relationship: part_of UBERON:0002389 ! hand digit
[Term]
id: UBERON:0003696
name: metatarsophalangeal joint
def: "The metatarsophalangeal articulations are the joints between the metatarsal bones of the foot and the proximal bones of the toes . They are condyloid joints meaning an elliptical or rounded surface (of the metatarsal bones) come close to the shallow cavities (of the proximal phalanges). The ligaments are the plantar and two collateral." [Wikipedia:Metatarsophalangeal_articulations]
comment: Editor notes: we follow FMA in making these joints part of digits
synonym: "articulationes metatarsophalangeae" RELATED LATIN [Wikipedia:Metatarsophalangeal_articulations]
synonym: "metatarsal joint" EXACT [FMA:35222]
synonym: "metatarsalphalangeal joint" RELATED [Wikipedia:Metatarsophalangeal_articulations]
synonym: "metatarsophalangeal" RELATED [Wikipedia:Metatarsophalangeal_articulations]
synonym: "metatarsophalangeal articulation" RELATED [Wikipedia:Metatarsophalangeal_articulations]
xref: FMA:35222
xref: GAID:258
xref: galen:MetatarsoPhalangealJoint
xref: http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray268.png
xref: MESH:A.02.835.583.378.531
xref: ncithesaurus:Metatarsophalangeal_Joint
xref: OpenCyc:Mx4rwCtS0pwpEbGdrcN5Y29ycA
xref: SCTID:239747005
is_a: UBERON:0001487 ! joint of foot
relationship: connects UBERON:0001448
relationship: connects UBERON:0003867
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001448 ! metatarsal bone
intersection_of: connects UBERON:0003867 ! distal phalanx of toe
relationship: connects UBERON:0001448 ! metatarsal bone
relationship: connects UBERON:0003867 ! distal phalanx of toe
relationship: part_of UBERON:0001466 ! foot digit
[Term]
id: UBERON:0003697
name: abdominal wall
def: "The abdominal wall represents the boundaries of the abdominal cavity. The abdominal wall is split into the posterior (back), lateral (sides) and anterior (front) walls. There is a common set of layers covering and forming all the walls: the deepest being the extraperitoneal fat, the parietal peritoneum, and a layer of fascia which has different names over where it covers (eg transversalis, psoas fascia). Superficial to these, but not present in the posterior wall are the three layers of muscle, the transversus abdominis (transverse abdominal muscle), the internal (obliquus internus) and the external oblique (obliquus externus)." [Wikipedia:Abdominal_wall]
synonym: "layers of the abdominal wall" RELATED [Wikipedia:Abdominal_wall]
synonym: "paries abdominalis" EXACT [Wikipedia:Abdominal_wall]
synonym: "paries abdominalis" RELATED LATIN [Wikipedia:Abdominal_wall]
synonym: "wall of abdomen" EXACT [FMA:259054]
xref: FMA:10429
xref: FMA:259054
xref: GAID:26
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg
xref: MESH:A.01.047.050
xref: ncithesaurus:Abdominal_Wall
xref: SCTID:181613000
is_a: UBERON:0000060 ! anatomical wall
relationship: part_of UBERON:0000916
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003698
name: subtalar joint
def: "A joint of the foot that connects the talus and the calcaneus." [UBERON:cjm, Wikipedia:Subtalar_joint]
synonym: "articulatio subtalaris" EXACT [FMA:35198, FMA:TA]
synonym: "articulatio talocalcanea" EXACT [FMA:35198, FMA:TA]
synonym: "subtalar joint" EXACT [FMA:35198]
synonym: "talocalcaneal articulation" RELATED [Wikipedia:Subtalar_joint]
synonym: "talocalcaneal joint" RELATED [GAID:260]
xref: FMA:35198
xref: GAID:260
xref: http://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG
xref: MESH:A.02.835.583.378.831.780
xref: ncithesaurus:Subtalar_Joint
xref: SCTID:182213007
is_a: UBERON:0008447 {source="MESH"} ! intertarsal joint
relationship: connects UBERON:0001450
relationship: connects UBERON:0002395
intersection_of: UBERON:0002217 ! synovial joint
intersection_of: connects UBERON:0001450 ! calcaneus
intersection_of: connects UBERON:0002395 ! talus
relationship: connects UBERON:0001450 ! calcaneus
relationship: connects UBERON:0002395 ! talus
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003699
name: pubic symphysis
def: "the firm fibrocartilaginous joint in the median plane between the two opposing surfaces of the pubic bones, which are united by an interpubic disc of fibrocartilage as well as the superior and arcuate pubic ligaments." [MP:0009575, Wikipedia:Pubic_symphysis]
comment: In birds, the pubic symphysis is present only in the ostrich, and the two hip bones are usually widely separated, making it easier to lay large eggs - Romer, Alfred Sherwood; Parsons, Thomas S. (1977). The Vertebrate Body. Philadelphia, PA: Holt-Saunders International. pp. 188–192. ISBN 0-03-910284-X.
subset: organ_slim
synonym: "interpubic articulation" RELATED [Wikipedia:Pubic_symphysis]
synonym: "symphisis pubis" RELATED [Wikipedia:Pubic_symphysis]
synonym: "symphysis pubica, symphysis pubis" RELATED LATIN [Wikipedia:Pubic_symphysis]
synonym: "symphysis pubis" EXACT [FMA:16950]
synonym: "symphysis pubis" RELATED [Wikipedia:Pubic_symphysis]
xref: AAO:0000769
xref: FMA:16950
xref: GAID:267
xref: http://upload.wikimedia.org/wikipedia/commons/5/51/Gray321.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Gray321.png/200px-Gray321.png
xref: MESH:A.02.835.583.656
xref: ncithesaurus:Pubic_Symphisis
xref: OpenCyc:Mx4rwGw9npwpEbGdrcN5Y29ycA
xref: SCTID:182200001
property_value: UBPROP:0000001 "Medial attachment of the two halves of the pelvic girdle.[AAO]" xsd:string
is_a: UBERON:0002216 {source="FMA"} ! symphysis
relationship: connects UBERON:0011090 ! skeleton of right pelvic girdle
relationship: connects UBERON:0011091 ! skeleton of left pelvic girdle
relationship: part_of UBERON:0002355 {source="FMA"} ! pelvis
[Term]
id: UBERON:0003700
name: temporomandibular joint
def: "A joint of the jaw that connects the mandible to a temporal bone. There are two TMJs, one on either side, working in unison. The unique feature of the TMJs is the articular disc. The disc is composed of fibrocartilagenous tissue (like the firm and flexible elastic cartilage of the ear) which is positioned between the two bones that form the joint. The TMJs are one of the only synovial joints in the human body with an articular disc, another being the sternoclavicular joint. The disc divides each joint into two. The lower joint compartment formed by the mandible and the articular disc is involved in rotational movement -- this is the initial movement of the jaw when the mouth opens. The upper joint compartment formed by the articular disk and the temporal bone is involved in translational movement -- this is the secondary gliding motion of the jaw as it is opened widely. The part of the mandible which mates to the under-surface of the disc is the condyle and the part of the temporal bone which mates to the upper surface of the disk is the glenoid (or mandibular) fossa[WP]." [Wikipedia:Temporomandibular_joint]
synonym: "articulatio temporomandibularis" RELATED LATIN [Wikipedia:Temporomandibular_joint]
synonym: "dentary-squamosal joint" RELATED [http://palaeos.com/vertebrates/glossary/glossaryT.html]
synonym: "squamosal-dentary joint" RELATED [http://palaeos.com/vertebrates/glossary/glossaryT.html]
synonym: "tempero-mandibular joint" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temperomandibular joint" EXACT [HP:0010754]
synonym: "temporalmandibular joint" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temporomandibular" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temporomandibular articulation" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temporomandibular joint" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "TMJ" EXACT [BTO:0003674, Wikipedia:Temporomandibular_joint]
xref: BTO:0003674
xref: EMAPA:19196
xref: FMA:54832
xref: GAID:272
xref: http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray309.png
xref: MA:0002899
xref: MESH:A.02.835.583.861
xref: ncithesaurus:Jaw_Joint
xref: SCTID:181814009
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011171 ! jaw joint
relationship: connects UBERON:0001695
relationship: connects UBERON:0004742
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001695 ! squamous part of temporal bone
intersection_of: connects UBERON:0004742 ! dentary
relationship: connects UBERON:0001695 ! squamous part of temporal bone
relationship: connects UBERON:0004742 ! dentary
relationship: develops_from UBERON:0011130 ! temporomandibular joint primordium
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0003701
name: calcaneal tendon
def: "The Achilles tendon is a tendon of the posterior leg. It serves to attach the plantaris, gastrocnemius (calf) and soleus muscles to the calcaneus (heel) bone." [Wikipedia:Achilles_tendon]
comment: AO notes: in FMA this is a ligament, and part of the muscle
synonym: "Achille's tendon" EXACT []
synonym: "Achilles tendon" EXACT [MA:0002993]
synonym: "Achilles' tendon" EXACT []
synonym: "calcaneal tendon" EXACT [FMA:51061]
synonym: "tendo Achillis" EXACT LATIN []
synonym: "tendo Achillis" EXACT LATIN [Wikipedia:Achilles_tendon]
synonym: "tendo calcaneus" EXACT LATIN [MA:0002993]
xref: FMA:51061
xref: GAID:277
xref: http://upload.wikimedia.org/wikipedia/commons/3/3c/Achilles-tendon.jpg
xref: MA:0002993
xref: MESH:A.02.880.176
xref: ncithesaurus:Achilles_Tendon
xref: OpenCyc:Mx4rvVjNX5wpEbGdrcN5Y29ycA
xref: SCTID:181705009
is_a: UBERON:0000043 ! tendon
is_a: UBERON:0004270 ! lower leg connective tissue
is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament
relationship: part_of UBERON:0001665 {source="FMA"} ! triceps surae
[Term]
id: UBERON:0003702
name: inguinal canal
def: "The inguinal canal is a passage in the anterior (toward the front of the body) abdominal wall which in men conveys the spermatic cord + the ilioinguinal nerve and in women the round ligament + the ilioinguinal nerve. The inguinal canal is larger and more prominent in men. [WP,unvetted]." [Wikipedia:Inguinal_canal]
synonym: "canalis inguinalis" RELATED LATIN [Wikipedia:Inguinal_canal]
xref: EMAPA:19171
xref: EMAPA:26913
xref: FMA:19928
xref: GAID:28
xref: http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray1227.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray1227.png/200px-Gray1227.png
xref: MESH:A.01.047.412
xref: ncithesaurus:Inguinal_Canal
xref: SCTID:243966008
is_a: UBERON:0004111 ! anatomical conduit
relationship: surrounded_by UBERON:0003697 {source="Wikipedia"} ! abdominal wall
[Term]
id: UBERON:0003703
name: extrahepatic bile duct
def: "the passages external to the liver for the conveyance of bile." [MP:0009498]
subset: vertebrate_core
synonym: "bile duct extrahepatic part" RELATED [MA:0002659]
synonym: "extrahepatic biliary system" RELATED [GAID:281]
xref: FMA:14678
xref: GAID:281
xref: MA:0002659
xref: MESH:A.03.159.183.079
xref: ncithesaurus:Extrahepatic_Bile_Duct
xref: SCTID:276158002
property_value: "spatially_disjoint_from" UBERON:0002107
is_a: UBERON:0002394 ! bile duct
[Term]
id: UBERON:0003704
name: intrahepatic bile duct
def: "the passages within the liver for the conveyance of bile." [MP:0009497]
subset: vertebrate_core
synonym: "bile duct intrahepatic part" EXACT [MA:0001630]
xref: FMA:15766
xref: GAID:287
xref: MA:0001630
xref: MESH:A.03.159.183.158
xref: ncithesaurus:Intrahepatic_Bile_Duct
xref: SCTID:362193005
xref: TAO:0005169
xref: ZFA:0005169
property_value: UBPROP:0000001 "Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct.[TAO]" xsd:string
is_a: UBERON:0002394 ! bile duct
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0003705
name: meckel's diverticulum
def: "a small bulge in the small intestine present at birth. It is a vestigial remnant of the omphalomesenteric duct" [Wikipedia:Meckel's_diverticulum]
comment: AO notes: finding in ncit
synonym: "diverticulum of meckel" EXACT [FMA:14967]
synonym: "ileal diverticulum" EXACT [FMA:14967]
synonym: "meckel diverticulum" RELATED [GAID:317]
synonym: "meckel's diverticulum" EXACT [FMA:14967]
synonym: "meckels diverticulum" RELATED [GAID:317]
xref: FMA:14967
xref: GAID:317
xref: galen:MeckelsDiverticulum
xref: MESH:A.03.492.411.620.484.612
xref: ncithesaurus:Meckel_Diverticulum
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0006590 ! vestigial embryonic structure
relationship: develops_from UBERON:0007105 {source="Wikipedia"} ! vitelline duct
relationship: part_of UBERON:0002116 ! ileum
[Term]
id: UBERON:0003706
name: vocal cord
def: "Either of two pairs of folds of mucous membrane projecting into the larynx." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
synonym: "plica vocalis" RELATED [BTO:0005084]
synonym: "Stimmband" RELATED [BTO:0005084]
synonym: "Stimmlippe" RELATED [BTO:0005084]
synonym: "true vocal cord" EXACT [FMA:55457]
synonym: "vocal band" RELATED [BTO:0005084]
synonym: "vocal chord" RELATED [BTO:0005084]
synonym: "vocal cord" EXACT [FMA:55457]
synonym: "vocal fold" RELATED [GAID:344]
xref: BTO:0005084
xref: EMAPA:19181
xref: FMA:55457
xref: GAID:344
xref: MESH:A.04.329.364.737
xref: ncithesaurus:Vocal_Cord
xref: OpenCyc:Mx4rvVieepwpEbGdrcN5Y29ycA
xref: SCTID:245504003
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001737 {source="FMA"} ! larynx
relationship: part_of UBERON:0002486 {source="BTO"} ! glottis
[Term]
id: UBERON:0003707
name: sinus of Valsalva
def: "one of the anatomic dilations of the ascending aorta, which occurs just above the aortic valve." [Wikipedia:Aortic_sinus]
synonym: "aortic sinus" RELATED [GAID:472]
synonym: "Petit's sinus" RELATED [Wikipedia:Aortic_sinus]
synonym: "sinus aorta" RELATED [Wikipedia:Aortic_sinus]
synonym: "sinus aortae" RELATED LATIN [Wikipedia:Aortic_sinus]
synonym: "sinus aortae" RELATED [Wikipedia:Aortic_sinus]
synonym: "sinus of Morgagni" RELATED [Wikipedia:Aortic_sinus]
synonym: "sinus of Otto" RELATED [Wikipedia:Aortic_sinus]
synonym: "sinus of valsalva" EXACT [FMA:3745]
synonym: "valsalva sinus" RELATED [GAID:472]
xref: EMAPA:18625
xref: FMA:3745
xref: GAID:472
xref: http://upload.wikimedia.org/wikipedia/commons/5/54/Gray497.png
xref: MESH:A.07.231.114.056.847
xref: ncithesaurus:Sinus_of_Valsava
xref: SCTID:277732004
is_a: UBERON:0000947 ! aorta
relationship: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0003708
name: carotid sinus
def: "In human anatomy, the carotid sinus is a localized dilation of the internal carotid artery at its origin, the common carotid artery bifurcation. A synonym for the carotid sinus is the carotid bulb. [WP,unvetted]." [Wikipedia:Carotid_sinus]
synonym: "sinus caroticus" RELATED LATIN [Wikipedia:Carotid_sinus]
xref: EMAPA:19320
xref: FMA:50094
xref: GAID:482
xref: http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray513.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray513.png/200px-Gray513.png
xref: MESH:A.07.231.114.186.456
xref: SCTID:281137000
is_a: UBERON:0001530 ! common carotid artery plus branches
[Term]
id: UBERON:0003709
name: circle of Willis
def: "a circle of arteries that supply blood to the brain. The Circle of Willis comprises the following arteries: Anterior cerebral artery (left and right); Anterior communicating artery; Internal carotid artery (left and right); Posterior cerebral artery (left and right); Posterior communicating artery (left and right).The basilar artery and middle cerebral arteries, supplying the brain, are also considered part of the circle" [Wikipedia:Circle_of_Willis]
comment: In zebrafish, the circle of vessels comprised of the basal communicating artery (BCA) and posterior communicating segments (PCS) superficially resemble but are not homologous to the human circle of Willis[http://zfish.nichd.nih.gov/zfatlas/Intro%20Page/comparative.html]. Editor note:
synonym: "arterial circle" BROAD [Wikipedia:Circle_of_Willis]
synonym: "arterial circle of Willis" EXACT []
synonym: "cerebral arterial circle" RELATED [GAID:486]
synonym: "circulus arteriosus cerebri" RELATED LATIN [Wikipedia:Circle_of_Willis]
synonym: "Willis circle" RELATED [GAID:486]
xref: EHDAA2:0000252
xref: EHDAA:9758
xref: FMA:50454
xref: GAID:486
xref: http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Circle_of_Willis_en.svg/200px-Circle_of_Willis_en.svg.png
xref: MESH:A.07.231.114.228.351
xref: OpenCyc:Mx4rwSrCwJwpEbGdrcN5Y29ycA
xref: SCTID:362047009
is_a: UBERON:0004573 ! systemic artery
relationship: overlaps UBERON:0007142 {source="FMA-modified"} ! left internal carotid artery
relationship: overlaps UBERON:0007143 {source="FMA-modified"} ! right internal carotid artery
[Term]
id: UBERON:0003710
name: vasa vasorum
def: "Nutrient blood vessels which supply the walls of large arteries or veins." [http://en.wikipedia.org/wiki/Vasa_vasorum, MESH:A.07.231.836]
comment: Taxon notes: The aorta of swine contains a vaso vasorum like humans - http://www.nal.usda.gov/awic/pubs/swine/swine.htm#art
xref: FMA:77433
xref: GAID:526
xref: MESH:A.07.231.836
xref: ncithesaurus:Vasa_Vasorum
xref: SCTID:7524009
is_a: UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0003711
name: brachiocephalic vein
def: "The left and right brachiocephalic veins in the upper chest are formed by the union of each corresponding internal jugular vein and subclavian vein. This is at the level of the sternoclavicular joint. These great vessels merge to form the superior vena cava. The brachiocephalic veins are the major veins returning blood to the superior vena cava." [Wikipedia:Brachiocephalic_vein]
synonym: "brachiocephalic venous tree" EXACT [FMA:4723]
synonym: "innomiate vein" RELATED [Wikipedia:Brachiocephalic_vein]
synonym: "innominate trunk" RELATED [Wikipedia:Brachiocephalic_vein]
synonym: "innominate vein" EXACT [FMA:4723]
synonym: "innominate vein" RELATED [Wikipedia:Brachiocephalic_vein]
synonym: "innominate vein" RELATED [GAID:529]
synonym: "innominate veins" RELATED [Wikipedia:Brachiocephalic_vein]
synonym: "vena brachiocephalica" RELATED [Wikipedia:Brachiocephalic_vein]
synonym: "vena brachiocephalica, venae anonymæ" RELATED LATIN [Wikipedia:Brachiocephalic_vein]
xref: EHDAA2:0000182
xref: EHDAA:9868
xref: FMA:4723
xref: GAID:529
xref: galen:BrachiocephalicVein
xref: http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png
xref: MESH:A.07.231.908.130
xref: ncithesaurus:Innominate_Vein
xref: OpenCyc:Mx4rvz3aUJwpEbGdrcN5Y29ycA
xref: SCTID:181371003
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0007204 ! brachiocephalic vasculature
[Term]
id: UBERON:0003712
name: cavernous sinus
xref: EMAPA:19059
xref: FMA:50772
xref: GAID:532
xref: MESH:A.07.231.908.224.334
xref: ncithesaurus:Cavernous_Sinus
xref: OpenCyc:Mx4rwKAVGJwpEbGdrcN5Y29ycA
xref: SCTID:244402005
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003713
name: splenic vein
def: "In anatomy, the splenic vein (in the past called the lienal vein) is the blood vessel that drains blood from the spleen. It joins with the superior mesenteric vein, to form the hepatic portal vein and follows a course superior to the pancreas, alongside of the similarly named artery, the splenic artery. It collects branches from the stomach and pancreas and most notably from the large intestine, which is drained by the inferior mesenteric vein and joins with splenic vein shortly before it forms the portal vein. [WP,unvetted]." [Wikipedia:Splenic_vein]
synonym: "vena lienalis" RELATED LATIN [Wikipedia:Splenic_vein]
xref: FMA:14331
xref: GAID:541
xref: galen:SplenicVein
xref: http://upload.wikimedia.org/wikipedia/commons/e/e4/Bilebladder.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5b/Gray1189.png/200px-Gray1189.png
xref: MESH:A.07.231.908.670.730
xref: ncithesaurus:Splenic_Vein
xref: OpenCyc:Mx4rwCt0eZwpEbGdrcN5Y29ycA
xref: SCTID:278029005
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003714
name: neural tissue
def: "Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642]
comment: FMA definition includes vasculature
synonym: "nerve tissue" EXACT [FMA:9642]
synonym: "nervous tissue" EXACT [FMA:9642]
synonym: "portion of neural tissue" EXACT [FMA:9642]
xref: AAO:0000325
xref: AEO:0000123
xref: EHDAA2:0003123
xref: FMA:9642
xref: GAID:609
xref: MESH:A.08.561
xref: ncithesaurus:Nervous_Tissue
xref: OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ
xref: SCTID:91728009
property_value: UBPROP:0000001 "One of the four types of tissue in traditional classifications. Cells forming the brain, spinal cord and peripheral nervous system.[AAO]" xsd:string
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
disjoint_from: UBERON:0004755 ! skeletal tissue
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0003715
name: splanchnic nerve
def: "the major nerves supplying sympathetic innervation to the abdomen, including the greater, lesser, and lowest (or smallest) splanchnic nerves that are formed by preganglionic fibers from the spinal cord which pass through the paravertebral ganglia and then to the celiac ganglia and plexuses and the lumbar splanchnic nerves carry fibers which pass through the lumbar paravertebral ganglia to the mesenteric and hypogastric ganglia." [MP:0008318]
xref: FMA:5883
xref: GAID:800
xref: MESH:A.08.800.050.050.800
xref: SCTID:264198001
is_a: UBERON:0001021 ! nerve
relationship: part_of UBERON:0000013 ! sympathetic nervous system
[Term]
id: UBERON:0003716
name: recurrent laryngeal nerve
def: "A branch of the vagus nerve that supplies motor function and sensation to the larynx (voice box). It travels within the endoneurium. It is the nerve of the 6th Branchial Arch." [Wikipedia:Recurrent_laryngeal_nerve]
synonym: "inferior laryngeal nerve" RELATED [GAID:804]
synonym: "nervus laryngeus recurrens" EXACT LATIN [Wikipedia:Recurrent_laryngeal_nerve]
synonym: "recurrent laryngeal nerve from vagus nerve" EXACT []
synonym: "recurrent nerve" BROAD [Wikipedia:Recurrent_laryngeal_nerve]
synonym: "vagus X nerve recurrent laryngeal branch" EXACT [VHOG:0001347]
xref: FMA:6246
xref: GAID:804
xref: http://en.wikipedia.org/wiki/File:Gray793.png
xref: MESH:A.08.800.050.050.925.450.700
xref: SCTID:24227007
xref: VHOG:0001347
is_a: UBERON:0002003 ! peripheral nerve
relationship: branch_of UBERON:0001759 ! vagus nerve
[Term]
id: UBERON:0003718
name: muscle spindle
def: "the sensory organs in muscle that are involved in the stretch reflex." [MP:0004069]
synonym: "muscle stretch receptor" RELATED [GAID:819]
synonym: "neuromuscular spindle" EXACT [FMA:83607]
synonym: "neuromuscular spindle" RELATED [GAID:819]
xref: FMA:83607
xref: GAID:819
xref: MESH:A.08.800.550.700.500.500
xref: ncithesaurus:Muscle_Spindle
xref: SCTID:12945004
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0003719
name: Pacinian corpuscle
alt_id: UBERON:0003717
def: "any of the rapidly adapting mechanoreceptors found in subcutaneous tissue beneath both hairy and glabrous skin, and which normally contain an afferent nerve fiber surrounded by a capsule with multiple concentric layers." [MP:0000988, Wikipedia:Lamellar_corpuscle]
comment: AO notes: FMA treats pacinia and G-M as distinct
synonym: "corpuscle of golgi-mazzoni" EXACT [FMA:83609]
synonym: "corpusculum lamellosum" EXACT LATIN [Wikipedia:Lamellar_corpuscle]
synonym: "golgi mazzoni corpuscle" RELATED [GAID:817]
synonym: "golgi-mazzoni" RELATED [Wikipedia:Pacinian_corpuscle]
synonym: "golgi-mazzoni corpuscle" EXACT [FMA:83609]
synonym: "golgi-mazzoni corpuscles" RELATED [Wikipedia:Pacinian_corpuscle]
synonym: "lamellar corpuscle" EXACT [Wikipedia:Lamellar_corpuscle]
synonym: "lamellated corpuscle" RELATED [Wikipedia:Pacinian_corpuscle]
synonym: "pacinian body" RELATED [Wikipedia:Pacinian_corpuscle]
synonym: "Pacinian corpuscle" EXACT [Wikipedia:Lamellar_corpuscle]
synonym: "pacinian corpuscle" RELATED [Wikipedia:Pacinian_corpuscle]
synonym: "pacinian corpuscle end-organs" RELATED [Wikipedia:Pacinian_corpuscle]
synonym: "pacinian corpuscles" RELATED [Wikipedia:Pacinian_corpuscle]
synonym: "vater-pacini corpuscle" RELATED [Wikipedia:Pacinian_corpuscle]
synonym: "vater-pacini corpuscles" RELATED [Wikipedia:Pacinian_corpuscle]
xref: FMA:83604
xref: FMA:83609
xref: GAID:817
xref: GAID:820
xref: http://en.wikipedia.org/wiki/File:Gray935.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray935.png/200px-Gray935.png
xref: MESH:A.08.800.550.700.500.300
xref: MESH:A.08.800.550.700.500.700
xref: NIF_Subcellular:FMA_83604
xref: SCTID:37419002
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0003720
name: anterior cranial fossa
def: "The floor of the anterior fossa is formed by the orbital plates of the frontal, the cribriform plate of the ethmoid, and the small wings and front part of the body of the sphenoid; it is limited behind by the posterior borders of the small wings of the sphenoid and by the anterior margin of the chiasmatic groove. The lesser wings of the sphenoid separate the anterior and middle fossae." [Wikipedia:Anterior_cranial_fossa]
synonym: "anterior fossa" BROAD []
synonym: "fossa cranii anterior" RELATED LATIN [Wikipedia:Anterior_cranial_fossa]
xref: FMA:9682
xref: GAID:83
xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray193.png/200px-Gray193.png
xref: MESH:A.01.456.830.150
xref: ncithesaurus:Anterior_Fossa
is_a: UBERON:0008789 ! cranial fossa
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0003721
name: lingual nerve
xref: FMA:53218
xref: GAID:835
xref: MESH:A.08.800.800.120.760.500.450
xref: SCTID:280260006
is_a: UBERON:0001021 ! nerve
relationship: branch_of UBERON:0000375 ! mandibular nerve
[Term]
id: UBERON:0003722
name: middle cranial fossa
def: "The compartment containing the anterior extremities and half the inferior surface of the temporal lobes (TEMPORAL LOBE) of the cerebral hemispheres. Lying posterior and inferior to the anterior cranial fossa (CRANIAL FOSSA, ANTERIOR), it is formed by part of the TEMPORAL BONE and SPHENOID BONE. It is separated from the posterior cranial fossa (CRANIAL FOSSA, POSTERIOR) by crests formed by the superior borders of the petrous parts of the temporal bones[MESH]. The middle fossa, deeper than the anterior cranial fossa, is narrow medially and widens laterally to the sides of the skull. It is separated from the posterior fossa by the clivus and the petrous crest. It is bounded in front by the posterior margins of the lesser wings of the sphenoid bone, the anterior clinoid processes, and the ridge forming the anterior margin of the chiasmatic groove; behind, by the superior angles of the petrous portions of the temporal bones and the dorsum sellC&; laterally by the temporal squamC&, sphenoidal angles of the parietals, and greater wings of the sphenoid. It is traversed by the squamosal, sphenoparietal, sphenosquamosal, and sphenopetrosal sutures[WP]." [MESH:A.01.456.830.165, Wikipedia:Middle_cranial_fossa]
synonym: "fossa cranii media" RELATED LATIN [Wikipedia:Middle_cranial_fossa]
synonym: "middle fossa" BROAD [Wikipedia:Middle_cranial_fossa]
xref: FMA:54369
xref: GAID:84
xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png
xref: MESH:A.01.456.830.165
xref: ncithesaurus:Middle_Fossa
is_a: UBERON:0008789 ! cranial fossa
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0003723
name: vestibular nerve
def: "The vestibular nerve is one of the two branches of the Vestibulocochlear nerve (the cochlear nerve being the other). It goes to the semicircular canals via the vestibular ganglion. It receives positional information. Axons of the vestibular nerve synapse in the vestibular nucleus on the lateral floor and wall of the fourth ventricle in the pons and medulla. It arises from bipolar cells in the vestibular ganglion, ganglion of Scarpa, which is situated in the upper part of the outer end of the internal auditory meatus. [WP,unvetted]." [Wikipedia:Vestibular_nerve]
synonym: "nervus vestibularis" RELATED LATIN [Wikipedia:Vestibular_nerve]
synonym: "scarpa ganglion" RELATED [GAID:840]
synonym: "scarpa's ganglion" RELATED [GAID:840]
synonym: "scarpas ganglion" RELATED [GAID:840]
synonym: "vestibular root of acoustic nerve" EXACT [FMA:53401]
synonym: "vestibular root of eighth cranial nerve" EXACT [FMA:53401]
synonym: "vestibulocochlear VIII nerve vestibular component" EXACT [MA:0001111]
xref: EHDAA2:0002200
xref: FMA:53401
xref: GAID:840
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg/200px-Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg
xref: MA:0001111
xref: MESH:A.08.800.800.120.910.900
xref: ncithesaurus:Vestibular_Nerve
xref: OpenCyc:Mx4rvxAWX5wpEbGdrcN5Y29ycA
xref: SCTID:362464003
xref: VHOG:0001181
is_a: UBERON:0001785 ! cranial nerve
relationship: branch_of UBERON:0001648 ! vestibulocochlear nerve
[Term]
id: UBERON:0003724
name: musculocutaneous nerve
def: "The musculocutaneous nerve arises from the lateral cord of the brachial plexus, opposite the lower border of the Pectoralis minor, its fibers being derived from C5, C6, C7. [WP,unvetted]." [Wikipedia:Musculocutaneous_nerve]
synonym: "casserio's nerve" EXACT [FMA:37064]
synonym: "nervus musculocutaneus" RELATED LATIN [Wikipedia:Musculocutaneous_nerve]
xref: FMA:37064
xref: GAID:844
xref: http://upload.wikimedia.org/wikipedia/commons/a/a7/Nerves_of_the_left_upper_extremity.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Nerves_of_the_left_upper_extremity.gif/200px-Nerves_of_the_left_upper_extremity.gif
xref: MESH:A.08.800.800.720.050.540
xref: OpenCyc:Mx4rvzp0l5wpEbGdrcN5Y29ycA
xref: SCTID:181019000
is_a: UBERON:0002003 ! peripheral nerve
[Term]
id: UBERON:0003725
name: cervical plexus
def: "The cervical plexus is a plexus of the ventral rami of the first four cervical spinal nerves which are located from C1 to C5 cervical segment in the neck. They are located laterally to the transverse processes between prevertebral muscles from the medial side and vertebral from lateral side. Here there is anastomosis with accessory nerve, hypoglossal nerve and sympathetic trunk. It is located in the neck, deep to sternocleidomastoid. Nerves formed from the cervical plexus innervate the back of the head, as well as some neck muscles. The branches of the cervical plexus emerge from the posterior triangle at the nerve point, a point which lies midway on the posterior border of the Sternocleidomastoid[WP]." [Wikipedia:Cervical_plexus]
synonym: "cervical nerve plexus" EXACT [FMA:5904]
synonym: "cervical plexus" EXACT [FMA:5904]
synonym: "plexus cervicalis" EXACT [FMA:5904, FMA:TA]
synonym: "plexus cervicalis" RELATED LATIN [Wikipedia:Cervical_plexus]
xref: FMA:5904
xref: GAID:847
xref: http://upload.wikimedia.org/wikipedia/commons/2/20/Gray784.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Gray784.png/200px-Gray784.png
xref: MESH:A.08.800.800.720.150
xref: OpenCyc:Mx4rvkEE3JwpEbGdrcN5Y29ycA
xref: SCTID:181107005
is_a: UBERON:0001813 ! somatic nerve plexus
[Term]
id: UBERON:0003726
name: thoracic nerve
def: "The twelve spinal nerves on each side of the thorax. They include eleven INTERCOSTAL NERVES and one subcostal nerve. Both sensory and motor, they supply the muscles and skin of the thoracic and abdominal walls." [MESH:A.08.800.800.720.800]
synonym: "pectoral nerve" RELATED [GAID:857]
synonym: "thoracic spinal nerve" EXACT [FMA:5860]
xref: FMA:5860
xref: GAID:857
xref: MESH:A.08.800.800.720.800
xref: OpenCyc:Mx4rwSJp_ZwpEbGdrcN5Y29ycA
xref: SCTID:360498003
is_a: UBERON:0001780 ! spinal nerve
[Term]
id: UBERON:0003727
name: intercostal nerve
def: "The intercostal nerves are the anterior divisions (rami anteriores; ventral divisions) of the thoracic spinal nerves from T1 to T11. Each nerve is connected with the adjoining ganglion of the sympathetic trunk by a gray and a white ramus communicans. The intercostal nerves are distributed chiefly to the thoracic pleura and abdominal peritoneum and differ from the anterior divisions of the other spinal nerves in that each pursues an independent course without plexus formation. The first two nerves supply fibers to the upper limb in addition to their thoracic branches; the next four are limited in their distribution to the parietes of the thorax; the lower five supply the parietes of the thorax and abdomen. The 7th intercostal nerve terminates at the xyphoid process, at the lower end of the sternum. The 10th intercostal nerve terminates at the umbilicus. The twelfth thoracic is distributed to the abdominal wall and groin. [WP,unvetted]." [Wikipedia:Intercostal_nerves]
synonym: "anterior ramus of thoracic nerve" EXACT [FMA:6028]
synonym: "anterior ramus of thoracic spinal nerve" EXACT [FMA:6028]
synonym: "nervi intercostales" RELATED LATIN [Wikipedia:Intercostal_nerves]
synonym: "ramus anterior, nervus thoracicus" EXACT [FMA:6028]
synonym: "thoracic anterior ramus" EXACT [FMA:6028]
synonym: "ventral ramus of thoracic spinal nerve" EXACT [FMA:6028]
xref: EMAPA:18227
xref: FMA:6028
xref: GAID:858
xref: http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray819.png/200px-Gray819.png
xref: MESH:A.08.800.800.720.800.350
xref: ncithesaurus:Intercostal_Nerve
xref: SCTID:279568001
is_a: UBERON:0001780 ! spinal nerve
[Term]
id: UBERON:0003728
name: mediastinum
def: "The mediastinum is a non-delineated group of structures in the thorax, surrounded by loose connective tissue. It is the central compartment of the thoracic cavity. It contains the heart, the great vessels of the heart, esophagus, trachea, phrenic nerve, cardiac nerve, thoracic duct, thymus, and lymph nodes of the central chest. The mediastinum lies between the right and left pleura in and near the median sagittal plane of the chest. It extends from the sternum in front to the vertebral column behind, and contains all the thoracic viscera except the lungs. It may be divided for purposes of description into two parts:an upper portion, above the upper level of the pericardium, which is named the superior mediastinum with its superior limit at the superior thoracic opening and its inferior limit at the plane from the sternal angle to the disc of T4-T5 (Plane of Ludwig at Angle of Louis); and a lower portion, below the upper level of the pericardium. This lower portion is again subdivided into three parts, viz. that in front of the pericardium, the anterior mediastinum; that containing the pericardium and its contents, the middle mediastinum; and that behind the pericardium, the posterior mediastinum. It is surrounded by the chest wall anteriorly, the lungs laterally and the spine posteriorly. It is continuous with the loose connective tissue of the neck, and extends inferiorly onto the diaphragm." [Wikipedia:Mediastinum]
synonym: "mediastinal part of chest" EXACT [FMA:9826]
xref: EFO:0003057
xref: FMA:9826
xref: GAID:94
xref: http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Mediastinum.png/200px-Mediastinum.png
xref: MESH:A.01.911.800.500
xref: ncithesaurus:Mediastinum
xref: OpenCyc:Mx4rv2OKJ5wpEbGdrcN5Y29ycA
xref: SCTID:181217005
is_a: UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003729
name: mouth mucosa
def: "the mucous membrane epithelium of the mouth. It can be divided into three categories: masticatory, lining, and specialized." [Wikipedia:Oral_mucosa]
comment: ncit split mouth/oral mucosa into lip and buccal
synonym: "adult mouth mucosa" EXACT [OBOL:automatic]
synonym: "adult mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "adult mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "adult mouth organ mucosa" EXACT [OBOL:automatic]
synonym: "buccal mucosa" RELATED [GAID:951]
synonym: "mouth mucosa" EXACT [FMA:59660]
synonym: "mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "mouth organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of adult mouth" EXACT [OBOL:automatic]
synonym: "mucosa of mouth" EXACT [OBOL:automatic]
synonym: "mucosa of organ of adult mouth" EXACT [OBOL:automatic]
synonym: "mucosa of organ of mouth" EXACT [OBOL:automatic]
synonym: "mucosal lining of mouth" RELATED [MA:0002794]
synonym: "mucous membrane of adult mouth" EXACT [OBOL:automatic]
synonym: "mucous membrane of mouth" EXACT [FMA:59660]
synonym: "oral mucosa" RELATED [GAID:951]
synonym: "oral part of viscerocranial mucosa" EXACT [FMA:59660]
synonym: "organ mucosa of adult mouth" EXACT [OBOL:automatic]
synonym: "organ mucosa of mouth" EXACT [OBOL:automatic]
synonym: "tunica mucosa oris" EXACT [FMA:59660, FMA:TA]
synonym: "tunica mucosa oris" RELATED LATIN [Wikipedia:Oral_mucosa]
xref: BTO:0002860
xref: FMA:59660
xref: GAID:951
xref: MA:0002794
xref: MESH:A.10.615.550.599
xref: ncithesaurus:Oral_Mucosa
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000165 ! mouth
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0003820
name: prostate bud
def: "A region of the fetal urogenital sinus epithelium destined to become the prostate[GO]." [GO:0060513]
comment: AR activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth. There are three phases of prostatic budding: (1) the specification phase, when instructive developmental cues define where buds will form in the UGS, (2) the initiation phase, when prostatic buds begin to form, and (3) the elongation phase, when proliferation, cell adhesion, and cell migration coordinate outgrowth of prostatic buds into UGM. Timing of prostatic bud formation and the quantity and pattern of buds that are formed in the UGS are strictly regulated [3, 4]. The position of prostatic buds as they emerge from the UGS in utero determines the arrangement of prostate ducts in adulthood.[PMID:18977204]
synonym: "prostate ductal progenitor" EXACT [PMID:18977204]
synonym: "prostatic bud" EXACT []
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005153 {source="GO:0060572"} ! epithelial bud
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: develops_from UBERON:0009847 {source="PMID:18977204"} ! prostate field
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003821
name: metacarpal/metatarsal bone
synonym: "cannon bone" NARROW SENSU [UBERON:cjm]
synonym: "metacarpal or metatarsal bone" EXACT []
synonym: "metacarpal/metatarsal" EXACT []
synonym: "metapodium bone" EXACT [http://en.wiktionary.org/wiki/metapodial, UBERON:cjm]
xref: MA:0000301
is_a: UBERON:0003606 ! limb long bone
is_a: UBERON:0011250 ! autopod bone
relationship: part_of UBERON:0006717 ! skeleton of autopod
[Term]
id: UBERON:0003822
name: forelimb stylopod
def: "A stylopod that is part of a forelimb [Obol]." [OBOL:automatic]
comment: WP states: anatomical usage, the term arm refers specifically to the segment between the shoulder and the elbow, while the segment between the elbow and wrist is the forearm. However, in common, literary, and historical usage, arm refers to the entire upper limb from shoulder to wrist. FMA uses the term Arm for this class, so we place it here. // comment: todo - check fore propodium in AAO // Naming conventions for pod terms under discussion within phenoscape group. TODO - add distinct term for skeleton and place AAO class here
synonym: "arm" RELATED INCONSISTENT [FMA:24890]
synonym: "brachial region" EXACT []
synonym: "brachium" EXACT [VSAO:0005057]
synonym: "forelimb stylopodial element" EXACT [MA:th]
synonym: "forelimb stylopodium" EXACT [OBOL:automatic]
synonym: "hind propodium" EXACT [AAO:0000887]
synonym: "hindlimb propodium" EXACT []
synonym: "proximal segment of free upper limb" EXACT []
synonym: "regio brachialis" EXACT [FMA:24890, FMA:TA]
synonym: "stylopod of arm" EXACT []
synonym: "stylopod of forelimb" EXACT []
synonym: "upper arm" EXACT [MA:0000035]
xref: AAO:0000887
xref: EHDAA2:0002112
xref: EHDAA:4186
xref: EHDAA:6234
xref: EMAPA:17424
xref: FMA:24890
xref: galen:Arm
xref: MA:0000035
xref: MESH:A.01.378.800.075
xref: ncithesaurus:Arm
xref: OpenCyc:Mx4rvVj0Z5wpEbGdrcN5Y29ycA
xref: SCTID:302538001
xref: VHOG:0000343
xref: VSAO:0005057
property_value: UBPROP:0000001 "Segment of the hindleg corresponding to the humerus.[AAO]" xsd:string
is_a: UBERON:0002472 ! stylopod
is_a: UBERON:0008785 ! upper limb segment
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002472 ! stylopod
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0001460 {source="MA"} ! arm
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003823
name: hindlimb zeugopod
def: "A zeugopod that is part of a hindlimb [Obol]." [OBOL:automatic]
comment: note that FMA:24979 denotes the middle segment (zeugopod), its placement here is correct. See obo-anatomy archives for discussion // Naming conventions for pod terms under discussion within phenoscape group. TODO - add distinct term for skeleton and place AAO class here
synonym: "calf" NARROW []
synonym: "calf of leg" EXACT [FMA:24984]
synonym: "crus" EXACT [VSAO:0005060]
synonym: "crus of hindlimb" EXACT []
synonym: "hind epipodium" RELATED INCONSISTENT []
synonym: "hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "hindlimb epipodium" EXACT []
synonym: "hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopodium" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb" EXACT [FMA:24979]
synonym: "leg" RELATED INCONSISTENT [FMA:24979, MESH:A.01.378.610.500]
synonym: "lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "lower leg" EXACT []
synonym: "middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "posterior curral region" EXACT [FMA:24984]
synonym: "posterior leg region" EXACT [FMA:24984]
synonym: "posterior part of leg" EXACT [FMA:24984]
synonym: "posterior region of leg" EXACT [FMA:24984]
synonym: "regio cruris posterior" EXACT [FMA:24984, FMA:TA]
synonym: "regio surae" EXACT [FMA:24984, FMA:TA]
synonym: "shank" EXACT [VSAO:0005060]
synonym: "sura" EXACT [FMA:24984, FMA:TA]
synonym: "sural region" EXACT [FMA:24984]
synonym: "zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb" EXACT [OBOL:automatic]
xref: EFO:0003051
xref: EHDAA2:0001030
xref: EHDAA:5165
xref: EHDAA:6190
xref: EMAPA:17496
xref: FMA:24979
xref: FMA:24984
xref: galen:Leg
xref: MA:0000051
xref: MESH:A.01.378.610.500
xref: ncithesaurus:Leg
xref: OpenCyc:Mx4rvczZBpwpEbGdrcN5Y29ycA
xref: SCTID:244015008
xref: VHOG:0000348
xref: VSAO:0005060
is_a: UBERON:0002471 ! zeugopod
is_a: UBERON:0008784 ! lower limb segment
relationship: part_of UBERON:0002103
intersection_of: UBERON:0002471 ! zeugopod
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0000978 {source="MA"} ! leg
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003824
name: thoracic segment nerve
def: "A nerve that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "nerve of thorax" EXACT [OBOL:automatic]
synonym: "thorax nerve" EXACT [OBOL:automatic]
synonym: "upper body nerve" RELATED [MA:0000562]
xref: MA:0000562
xref: MESH:A.08.800.800.720.800
xref: SCTID:359876006
is_a: UBERON:0003439 ! trunk nerve
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0003825
name: abdominal segment nerve
def: "A nerve that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk nerve" EXACT [OBOL:automatic]
synonym: "nerve of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000528
is_a: UBERON:0003439 ! trunk nerve
relationship: part_of UBERON:0002417
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003826
name: upper leg bone
def: "A bone that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
xref: MA:0000682
is_a: UBERON:0005893 ! leg bone
relationship: part_of UBERON:0000376
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0003827
name: thoracic segment bone
def: "A bone that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "bone of thorax" EXACT [OBOL:automatic]
synonym: "bone organ of thorax" EXACT [OBOL:automatic]
synonym: "thorax bone" EXACT [OBOL:automatic]
synonym: "thorax bone organ" EXACT [OBOL:automatic]
synonym: "upper body bone" RELATED [MA:0000559]
xref: MA:0000559
xref: SCTID:426649006
is_a: UBERON:0003463 ! trunk bone
is_a: UBERON:0005181 ! thoracic segment organ
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0003828
name: abdominal segment bone
def: "A bone that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk bone" EXACT [OBOL:automatic]
synonym: "abdominal segment of trunk bone organ" EXACT [OBOL:automatic]
synonym: "bone of abdominal segment of trunk" EXACT [OBOL:automatic]
synonym: "bone organ of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000525
is_a: UBERON:0003463 ! trunk bone
is_a: UBERON:0005173 ! abdominal segment organ
relationship: part_of UBERON:0002417
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003829
name: urethra muscle
def: "A muscle organ that is part of a urethra [Obol]." [OBOL:automatic]
comment: AO notes: FMA class may not be equivalent
synonym: "muscle layer of urethra" RELATED [FMA:76909]
synonym: "muscle organ of urethra" EXACT [OBOL:automatic]
synonym: "urethra muscle organ" EXACT [OBOL:automatic]
synonym: "urethral muscle layer" RELATED [MA:0002649]
xref: FMA:76909
xref: MA:0002649
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000057
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0003830
name: thoracic segment muscle
def: "A muscle organ that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "muscle organ of thorax" EXACT [OBOL:automatic]
synonym: "thorax muscle organ" EXACT [OBOL:automatic]
synonym: "upper body muscle" RELATED [MA:0000561]
xref: MA:0000561
is_a: UBERON:0001774 ! muscle of trunk
is_a: UBERON:0005181 ! thoracic segment organ
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0003831
name: respiratory system muscle
def: "A muscle organ that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "muscle organ of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system muscle organ" EXACT [OBOL:automatic]
xref: MA:0001828
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003832
name: esophagus muscle
def: "A muscle organ that is part of a esophagus [Obol]." [OBOL:automatic]
comment: todo - split muscle vs muscle layer? MA subdivides into skeletal/smooth, wth smooth divided into circular and longitudinal
synonym: "esophagus muscle organ" EXACT [OBOL:automatic]
synonym: "gullet muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of esophagus" EXACT [OBOL:automatic]
synonym: "muscle organ of gullet" EXACT [OBOL:automatic]
synonym: "muscle organ of oesophagus" EXACT [OBOL:automatic]
synonym: "oesophagus muscle organ" EXACT [OBOL:automatic]
xref: FMA:62998
xref: MA:0002682
xref: SCTID:360961009
is_a: UBERON:0003830 ! thoracic segment muscle
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: part_of UBERON:0001043
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 {source="MA"} ! wall of esophagus
[Term]
id: UBERON:0003833
name: abdominal segment muscle
def: "A muscle organ that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000527
is_a: UBERON:0001774 ! muscle of trunk
is_a: UBERON:0005173 ! abdominal segment organ
relationship: part_of UBERON:0002417
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003834
name: thoracic segment blood vessel
def: "A blood vessel that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "blood vessel of thorax" EXACT [OBOL:automatic]
synonym: "thorax blood vessel" EXACT [OBOL:automatic]
synonym: "upper body blood vessel" RELATED [MA:0000558]
xref: MA:0000558
is_a: UBERON:0003513 ! trunk blood vessel
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0003835
name: abdominal segment blood vessel
def: "A blood vessel that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000524
is_a: UBERON:0003513 ! trunk blood vessel
relationship: part_of UBERON:0002417
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003836
name: abdominal segment skin
def: "A skin of body that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk skin" EXACT [OBOL:automatic]
synonym: "skin of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000530
is_a: UBERON:0001085 {source="MA"} ! skin of trunk
relationship: part_of UBERON:0002417
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk
relationship: part_of UBERON:0002417 {source="MA"} ! abdominal segment of trunk
[Term]
id: UBERON:0003837
name: thoracic segment connective tissue
def: "A portion of connective tissue that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "connective tissue of thorax" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of thorax" EXACT [OBOL:automatic]
synonym: "textus connectivus of thorax" EXACT [OBOL:automatic]
synonym: "thorax connective tissue" EXACT [OBOL:automatic]
synonym: "thorax portion of connective tissue" EXACT [OBOL:automatic]
synonym: "thorax textus connectivus" EXACT [OBOL:automatic]
synonym: "upper body connective tissue" RELATED [MA:0000560]
xref: MA:0000560
is_a: UBERON:0003586 ! trunk connective tissue
relationship: part_of UBERON:0000915
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0003838
name: abdominal segment connective tissue
def: "A portion of connective tissue that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk connective tissue" EXACT [OBOL:automatic]
synonym: "abdominal segment of trunk portion of connective tissue" EXACT [OBOL:automatic]
synonym: "abdominal segment of trunk textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of abdominal segment of trunk" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of abdominal segment of trunk" EXACT [OBOL:automatic]
synonym: "textus connectivus of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000526
is_a: UBERON:0003586 ! trunk connective tissue
relationship: part_of UBERON:0002417
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003839
name: forelimb joint
def: "A limb joint that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb joint of limb" EXACT [OBOL:automatic]
synonym: "anteriormost limb limb joint" EXACT [OBOL:automatic]
synonym: "fore limb joint of limb" EXACT [OBOL:automatic]
synonym: "fore limb limb joint" EXACT [OBOL:automatic]
synonym: "forelimb joint of limb" EXACT [OBOL:automatic]
synonym: "forelimb limb joint" EXACT [OBOL:automatic]
synonym: "joint of limb of anteriormost limb" EXACT [OBOL:automatic]
synonym: "joint of limb of fore limb" EXACT [OBOL:automatic]
synonym: "joint of limb of forelimb" EXACT [OBOL:automatic]
synonym: "joint of limb of superior member" EXACT [OBOL:automatic]
synonym: "joint of limb of upper extremity" EXACT [OBOL:automatic]
synonym: "limb joint of anteriormost limb" EXACT [OBOL:automatic]
synonym: "limb joint of fore limb" EXACT [OBOL:automatic]
synonym: "limb joint of forelimb" EXACT [OBOL:automatic]
synonym: "limb joint of superior member" EXACT [OBOL:automatic]
synonym: "limb joint of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member joint of limb" EXACT [OBOL:automatic]
synonym: "superior member limb joint" EXACT [OBOL:automatic]
synonym: "upper extremity joint of limb" EXACT [OBOL:automatic]
synonym: "upper extremity limb joint" EXACT [OBOL:automatic]
xref: EMAPA:19204
xref: MA:0000614
is_a: UBERON:0003657 ! limb joint
relationship: part_of UBERON:0002102
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003840
name: hindlimb joint
def: "A limb joint that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hind limb joint of limb" EXACT [OBOL:automatic]
synonym: "hind limb limb joint" EXACT [OBOL:automatic]
synonym: "hindlimb joint of limb" EXACT [OBOL:automatic]
synonym: "hindlimb limb joint" EXACT [OBOL:automatic]
synonym: "inferior member joint of limb" EXACT [OBOL:automatic]
synonym: "inferior member limb joint" EXACT [OBOL:automatic]
synonym: "joint of limb of hind limb" EXACT [OBOL:automatic]
synonym: "joint of limb of hindlimb" EXACT [OBOL:automatic]
synonym: "joint of limb of inferior member" EXACT [OBOL:automatic]
synonym: "joint of limb of lower extremity" EXACT [OBOL:automatic]
synonym: "joint of lower limb" EXACT [UBERON:cjm]
synonym: "limb joint of hind limb" EXACT [OBOL:automatic]
synonym: "limb joint of hindlimb" EXACT [OBOL:automatic]
synonym: "limb joint of inferior member" EXACT [OBOL:automatic]
synonym: "limb joint of lower extremity" EXACT [OBOL:automatic]
synonym: "lower extremity joint of limb" EXACT [OBOL:automatic]
synonym: "lower extremity limb joint" EXACT [OBOL:automatic]
xref: MA:0000662
xref: SCTID:304573000
is_a: UBERON:0003657 ! limb joint
relationship: part_of UBERON:0002103
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003841
name: autopod joint
def: "A limb joint that is part of an autopod [Obol]." [OBOL:automatic]
synonym: "autopod joint of limb" EXACT [OBOL:automatic]
synonym: "autopod limb joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment joint of limb" EXACT [OBOL:automatic]
synonym: "distal free limb segment limb joint" EXACT [OBOL:automatic]
synonym: "joint of limb of autopod" EXACT [OBOL:automatic]
synonym: "joint of limb of distal free limb segment" EXACT [OBOL:automatic]
synonym: "limb joint of autopod" EXACT [OBOL:automatic]
synonym: "limb joint of distal free limb segment" EXACT [OBOL:automatic]
synonym: "paw joint" RELATED [MA:0002715]
xref: MA:0002715
is_a: UBERON:0003657 ! limb joint
relationship: part_of UBERON:0002470
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002470 ! autopod region
relationship: part_of UBERON:0002470 ! autopod region
[Term]
id: UBERON:0003842
name: neural tube lumen
alt_id: UBERON:0005713
comment: TODO - check
synonym: "cavity of neural tube" EXACT [UBERON:cjm]
synonym: "lumen of neural tube" EXACT [UBERON:cjm]
synonym: "neural lumen" RELATED [EHDAA:2889]
synonym: "neural tube neural lumen" EXACT [EHDAA2:0001269]
xref: AAO:0011073
xref: EHDAA2:0001269
xref: EHDAA:2889
xref: EHDAA:914
xref: EMAPA:16167
xref: EMAPA:16533
xref: VHOG:0001119
xref: XAO:0000252
is_a: UBERON:0005082 ! tube lumen
relationship: surrounded_by UBERON:0001049
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: surrounded_by UBERON:0001049 ! neural tube
relationship: surrounded_by UBERON:0001049 ! neural tube
[Term]
id: UBERON:0003843
name: dental epithelium
def: "Epithelium that is part of a developing tooth or dental organ." [https://sourceforge.net/tracker/?func=detail&aid=3556489&group_id=76834&atid=994726, ZFA:0005134]
comment: Editor notes: see comments for dentail organ. Development notes: In the developing molar dentition of the mouse, tooth inductive po- tential resides in the dental epithelium until embryonic day (E)12.5 (3). Thereafter, tooth inductive potential shifts to neural crest-derived dental mesenchyme, which acquires the ability to direct tooth formation in nonodontogenic tissues (3, 4)[PMID:10954731]. Editor notes: todo - full developmental relationships
subset: vertebrate_core
synonym: "dental epithelia" EXACT PLURAL [ZFA:0005134]
synonym: "dental epithelium" EXACT [ZFA:0005134]
synonym: "odontogenic epithelium" EXACT []
synonym: "tooth epithelium" EXACT []
xref: AAO:0011027
xref: BTO:0001723
xref: ncithesaurus:Odontogenic_Epithelial_Remnants
xref: TAO:0005134
xref: VHOG:0001443
xref: XAO:0003203
xref: ZFA:0005134
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0005176
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0005176 ! tooth enamel organ
relationship: develops_from UBERON:0004362 {source="JB", notes="epithelium"} ! pharyngeal arch 1
relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ
relationship: part_of UBERON:0005176 ! tooth enamel organ
[Term]
id: UBERON:0003844
name: upper eyelid epithelium
def: "An epithelium that is part of a upper eyelid [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of superior eyelid" EXACT [OBOL:automatic]
synonym: "epithelial tissue of upper eyelid" EXACT [OBOL:automatic]
synonym: "epithelium of superior eyelid" EXACT [OBOL:automatic]
synonym: "epithelium of upper eyelid" EXACT [OBOL:automatic]
synonym: "superior eyelid epithelial tissue" EXACT [OBOL:automatic]
synonym: "superior eyelid epithelium" EXACT [OBOL:automatic]
synonym: "upper eyelid epithelial tissue" EXACT [OBOL:automatic]
xref: EHDAA2:0002116
xref: EMAPA:17835
xref: VHOG:0000638
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001712
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001712 ! upper eyelid
relationship: part_of UBERON:0001712 ! upper eyelid
[Term]
id: UBERON:0003845
name: lower eyelid epithelium
def: "An epithelium that is part of a lower eyelid [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of inferior eyelid" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lower eyelid" EXACT [OBOL:automatic]
synonym: "epithelium of inferior eyelid" EXACT [OBOL:automatic]
synonym: "epithelium of lower eyelid" EXACT [OBOL:automatic]
synonym: "inferior eyelid epithelial tissue" EXACT [OBOL:automatic]
synonym: "inferior eyelid epithelium" EXACT [OBOL:automatic]
synonym: "lower eyelid epithelial tissue" EXACT [OBOL:automatic]
xref: EHDAA2:0001016
xref: EMAPA:17832
xref: VHOG:0000637
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001713
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001713 ! lower eyelid
relationship: part_of UBERON:0001713 ! lower eyelid
[Term]
id: UBERON:0003846
name: thymus epithelium
def: "the supporting framework of the thymus." [MP:0009544]
synonym: "epithelial tissue of thymus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of thymus gland" EXACT [OBOL:automatic]
synonym: "epithelium of thymus" EXACT [OBOL:automatic]
synonym: "epithelium of thymus gland" EXACT [OBOL:automatic]
synonym: "thymic epithelial tissue" EXACT []
synonym: "thymic epithelium" EXACT [BTO:0001836]
synonym: "thymus epithelial tissue" EXACT [OBOL:automatic]
synonym: "thymus gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "thymus gland epithelium" EXACT [OBOL:automatic]
xref: BTO:0001836
xref: EHDAA2:0002019
xref: MA:0000768
xref: ncithesaurus:Thymic_Epithelial_Tissue
xref: VHOG:0001426
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0002370
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002370 ! thymus
relationship: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0003847
name: thyroid artery
xref: AAO:0010490
xref: EHDAA2:0002029
xref: EHDAA:7372
xref: EMAPA:18622
xref: MA:0002066
xref: ncithesaurus:Thyroid_Artery
xref: VHOG:0001366
property_value: UBPROP:0000001 "Part of the external carotid which supplies blood to the thyroid gland.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of external carotid (AAO:0010218)[AAO]" xsd:string
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0003848
name: gonadal vein
def: "In medicine, gonadal vein refers to the blood vessel that carrying blood away from the gonad (testis, ovary) toward the heart. Females : ovarian vein Males : testicular vein [WP,unvetted]." [Wikipedia:Gonadal_vein]
synonym: "gonad vein" EXACT [OBOL:automatic]
synonym: "gonada vein" EXACT [OBOL:automatic]
synonym: "vein of gonad" EXACT [OBOL:automatic]
synonym: "vein of gonada" EXACT [OBOL:automatic]
xref: EHDAA2:0000719
xref: EHDAA:8703
xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray1120.png/200px-Gray1120.png
xref: OpenCyc:Mx4rvlWYh5wpEbGdrcN5Y29ycA
xref: SCTID:278192008
xref: VHOG:0001340
is_a: UBERON:0001638 ! vein
relationship: attaches_to UBERON:0000991
intersection_of: UBERON:0001638 ! vein
intersection_of: attaches_to UBERON:0000991 ! gonad
relationship: attaches_to UBERON:0000991 ! gonad
[Term]
id: UBERON:0003849
name: mesencephalic neural crest
subset: vertebrate_core
synonym: "mesencephalic neural crest" EXACT [ZFA:0000935]
synonym: "neural crest midbrain" EXACT [ZFA:0000935]
xref: EFO:0003591
xref: EHDAA2:0001101
xref: EHDAA:360
xref: TAO:0000935
xref: VHOG:0000796
xref: ZFA:0000935
is_a: UBERON:0002342 ! neural crest
is_a: UBERON:0003099 {source="ZFA"} ! cranial neural crest
relationship: developmentally_contributes_to UBERON:0001891
intersection_of: UBERON:0002342 ! neural crest
intersection_of: developmentally_contributes_to UBERON:0001891 ! midbrain
relationship: developmentally_contributes_to UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003850
name: telencephalon neural crest
subset: vertebrate_core
synonym: "neural crest telencephalon" EXACT [ZFA:0000812]
xref: EFO:0003574
xref: RETIRED_EHDAA2:0001991
xref: TAO:0000812
xref: VHOG:0000799
xref: ZFA:0000812
property_value: UBPROP:0000001 "Cranial neural crest that is part of the telencephalon.[TAO]" xsd:string
is_a: UBERON:0002342 ! neural crest
relationship: developmentally_contributes_to UBERON:0001893
intersection_of: UBERON:0002342 ! neural crest
intersection_of: developmentally_contributes_to UBERON:0001893 ! telencephalon
relationship: developmentally_contributes_to UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0003851
name: diencephalon neural crest
synonym: "diencephalic neural crest" EXACT [ZFA:0000811]
synonym: "future diencephalon neural crest" EXACT [EHDAA2:0000603]
synonym: "neural crest diencephalon" EXACT [ZFA:0000811]
synonym: "neural crest of future diencephalon" EXACT [EMAPA:16518]
xref: EFO:0003573
xref: EHDAA2:0000603
xref: EMAPA:16518
xref: TAO:0000811
xref: VHOG:0000798
xref: ZFA:0000811
is_a: UBERON:0002342 ! neural crest
relationship: developmentally_contributes_to UBERON:0001894
intersection_of: UBERON:0002342 ! neural crest
intersection_of: developmentally_contributes_to UBERON:0001894 ! diencephalon
relationship: developmentally_contributes_to UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003852
name: rhombencephalon neural crest
subset: vertebrate_core
synonym: "neural crest hindbrain" EXACT [ZFA:0007063]
synonym: "rhombencephalic neural crest" EXACT [ZFA:0007063]
xref: EHDAA2:0001628
xref: EHDAA:362
xref: TAO:0007063
xref: VHOG:0001210
xref: ZFA:0007063
property_value: UBPROP:0000001 "Cranial neural crest that is part of the hindbrain.[TAO]" xsd:string
is_a: UBERON:0002342 ! neural crest
relationship: developmentally_contributes_to UBERON:0002028
intersection_of: UBERON:0002342 ! neural crest
intersection_of: developmentally_contributes_to UBERON:0002028 ! hindbrain
relationship: developmentally_contributes_to UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0003853
name: spinal cord neural crest
xref: EHDAA:696
xref: EMAPA:16094
xref: EMAPA:16163
xref: EMAPA:16529
xref: EMAPA:16881
xref: VHOG:0001006
is_a: UBERON:0002342 ! neural crest
relationship: developmentally_contributes_to UBERON:0002240
intersection_of: UBERON:0002342 ! neural crest
intersection_of: developmentally_contributes_to UBERON:0002240 ! spinal cord
relationship: developmentally_contributes_to UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003854
name: spinal cord neural plate
synonym: "neural plate of spinal cord" EXACT [OBOL:automatic]
xref: TAO:0007021
xref: VHOG:0000439
xref: ZFA:0007021
is_a: UBERON:0003075 ! neural plate
relationship: develops_from UBERON:0006241
intersection_of: UBERON:0003075 ! neural plate
intersection_of: develops_from UBERON:0006241 ! future spinal cord
relationship: develops_from UBERON:0006241 {source="ZFA"} ! future spinal cord
relationship: develops_from UBERON:0006241 ! future spinal cord
[Term]
id: UBERON:0003855
name: gonad mesenchyme
def: "A mesenchyme that is part of a gonad [Obol]." [OBOL:automatic]
synonym: "gonada mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonad" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonada" EXACT [OBOL:automatic]
xref: EHDAA:5012
xref: EMAPA:16858
xref: EMAPA:17385
xref: VHOG:0001090
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000991
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000991 ! gonad
relationship: part_of UBERON:0000991 ! gonad
[Term]
id: UBERON:0003856
name: odontogenic mesenchyme
def: "Mesenchyme that gives rise to an odontogenic papilla." [UBERON:cjm]
comment: Editor notes: we follow ZFA in introducing an additional distinction between the dental papilla and the (uncondensed) mesenchyme. Note that in some species such as zebrafish teeth are not part of the mouth, and sharks have dermal denticles which share similar developmental origins with teeth. For now we assume a NC origin for all and add a taxon restriction to 1st arch mesenchyme
subset: vertebrate_core
synonym: "dental mesenchyme" EXACT [ZFA:0005139]
synonym: "dental organ mesenchyme" EXACT [OBOL:automatic]
synonym: "enamel organ mesenchyme" EXACT [OBOL:automatic]
synonym: "tooth enamel organ mesenchyme" EXACT [OBOL:automatic]
synonym: "tooth mesenchyme" EXACT [OBOL:automatic]
xref: TAO:0005139
xref: VHOG_RETIRED:0001444
xref: ZFA:0005139
property_value: UBPROP:0000001 "Mesenchyme enclosed by dental organ.[TAO]" xsd:string
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: part_of UBERON:0005176
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0005176 ! tooth enamel organ
relationship: develops_from UBERON:0007213 {notes="see comments"} ! mesenchyme derived from head neural crest
relationship: develops_from UBERON:0010259 {gci_relation="part_of", source="JB", gci_filler="NCBITaxon:32523"} ! 1st arch mesenchyme from neural crest
relationship: part_of UBERON:0005176 {source="ZFA"} ! tooth enamel organ
relationship: part_of UBERON:0005176 ! tooth enamel organ
[Term]
id: UBERON:0003857
name: upper eyelid mesenchyme
def: "A mesenchyme that is part of a upper eyelid [Obol]." [OBOL:automatic]
synonym: "mesenchyme of superior eyelid" EXACT [OBOL:automatic]
synonym: "mesenchyme of upper eyelid" EXACT [OBOL:automatic]
synonym: "superior eyelid mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0002117
xref: EHDAA:9051
xref: VHOG:0001093
is_a: UBERON:0010330 ! eyelid mesenchyme
relationship: part_of UBERON:0001712
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001712 ! upper eyelid
relationship: develops_from UBERON:0003314 {source="EHDAA2"} ! eye mesenchyme
relationship: part_of UBERON:0001712 ! upper eyelid
[Term]
id: UBERON:0003858
name: lower eyelid mesenchyme
def: "A mesenchyme that is part of a lower eyelid [Obol]." [OBOL:automatic]
synonym: "inferior eyelid mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of inferior eyelid" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower eyelid" EXACT [OBOL:automatic]
xref: EHDAA2:0001017
xref: EHDAA:9045
xref: VHOG:0001036
is_a: UBERON:0010330 ! eyelid mesenchyme
relationship: part_of UBERON:0001713
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001713 ! lower eyelid
relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm
relationship: part_of UBERON:0001713 ! lower eyelid
[Term]
id: UBERON:0003859
name: forelimb mesenchyme
def: "A mesenchyme that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb mesenchyme" EXACT [OBOL:automatic]
synonym: "fore limb mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of anteriormost limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of fore limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of forelimb" EXACT [OBOL:automatic]
synonym: "mesenchyme of superior member" EXACT [OBOL:automatic]
synonym: "mesenchyme of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member mesenchyme" EXACT [OBOL:automatic]
synonym: "upper extremity mesenchyme" EXACT [OBOL:automatic]
synonym: "wing mesenchyme" NARROW SENSU [Geisha:syn]
xref: VHOG:0001109
is_a: UBERON:0009749 ! limb mesenchyme
relationship: part_of UBERON:0002102
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003860
name: hindlimb mesenchyme
def: "A mesenchyme that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hind limb mesenchyme" EXACT [OBOL:automatic]
synonym: "inferior member mesenchyme" EXACT [OBOL:automatic]
synonym: "lower extremity mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of hind limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of hindlimb" EXACT [OBOL:automatic]
synonym: "mesenchyme of inferior member" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower extremity" EXACT [OBOL:automatic]
xref: VHOG:0001074
is_a: UBERON:0009749 ! limb mesenchyme
relationship: part_of UBERON:0002103
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003861
name: neural arch
def: "posterior part of a vertebra that consists of a pair of pedicles and a pair of laminae, and supports seven processes: four articular processes, two transverse processes one spinous process[WP]. ZFA: A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone." [Wikipedia:Vertebral_arch]
comment: Taxon notes: tiny neural arches present in Hagfish (which lack a true vertebraal column).
subset: vertebrate_core
synonym: "arcus vertebra" EXACT [Wikipedia:Vertebral_arch]
synonym: "arcus vertebrae" EXACT PLURAL [Wikipedia:Vertebral_arch]
synonym: "arcus vertebrae" RELATED LATIN [Wikipedia:Vertebral_arch]
synonym: "arcus vertebrae (vertebralis)" EXACT [FMA:11946]
synonym: "dorsal arcocentrum" EXACT [ZFA:0001066]
synonym: "vertebra dorsal arch" RELATED [MA:0001453]
synonym: "vertebra neural arch" BROAD SENSU [MA:0001453]
xref: AAO:0000725
xref: EFO:0003618
xref: FMA:11946
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray82.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray82.png/200px-Gray82.png
xref: MA:0001453
xref: ncithesaurus:Arch_of_the_Vertebra
xref: OpenCyc:Mx4rwKYHvZwpEbGdrcN5Y29ycA
xref: SCTID:317373001
xref: TAO:0001066
xref: VHOG:0001670
xref: ZFA:0001066
property_value: UBPROP:0000001 "A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone.[TAO]" xsd:string
property_value: UBPROP:0000001 "Bony arch perched on the vertebral centrum; successive arches enclose the neural canal that surrounds and protects the spinal cord dorsally.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from basidorsal (TAO:0001060)[TAO]" xsd:string
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0010358 ! arch of centrum of vertebra
relationship: develops_from UBERON:0006063 ! cartilaginous neural arch
[Term]
id: UBERON:0003862
name: foot digit 4 phalanx
def: "A phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic]
synonym: "digit long bone of foot digit 4" EXACT [OBOL:automatic]
synonym: "foot digit 4 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 4 long bone of digit" EXACT [OBOL:automatic]
synonym: "fourth toe phalanx" EXACT [FMA:32901]
synonym: "long bone of digit of foot digit 4" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit 4" EXACT [OBOL:automatic]
synonym: "phalanx of fourth toe" EXACT [FMA:32901]
xref: EMAPA:19130
xref: FMA:32901
xref: MA:0001384
xref: ncithesaurus:Foot_Digit_4_Phalanx
xref: SCTID:361804008
is_a: UBERON:0001449 ! phalanx of toe
relationship: part_of UBERON:0003634
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003634 ! foot digit 4
relationship: develops_from UBERON:0010683 ! toe 4 phalanx cartilage condensation
relationship: part_of UBERON:0003634 ! foot digit 4
[Term]
id: UBERON:0003863
name: foot digit 5 phalanx
def: "A phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic]
synonym: "digit long bone of foot digit 5" EXACT [OBOL:automatic]
synonym: "foot digit 5 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 5 long bone of digit" EXACT [OBOL:automatic]
synonym: "little toe phalanx" EXACT [FMA:32902]
synonym: "long bone of digit of foot digit 5" EXACT [OBOL:automatic]
synonym: "phalanx of fifth digit of foot" EXACT [FMA:32902]
synonym: "phalanx of fifth toe" EXACT [FMA:32902]
synonym: "phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "phalanx of little toe" EXACT [FMA:32902]
xref: EMAPA:19132
xref: FMA:32902
xref: MA:0001385
xref: ncithesaurus:Foot_Digit_5_Phalanx
xref: SCTID:361806005
is_a: UBERON:0001449 ! phalanx of toe
relationship: part_of UBERON:0003635
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003635 ! foot digit 5
relationship: develops_from UBERON:0010684 ! toe 5 phalanx cartilage condensation
relationship: part_of UBERON:0003635 ! foot digit 5
[Term]
id: UBERON:0003864
name: middle phalanx of finger
def: "A middle phalanx that is part of a finger [Obol]." [OBOL:automatic]
synonym: "hand middle phalanx" EXACT [MA:0001394]
synonym: "middle phalanx of hand" EXACT []
xref: FMA:75817
xref: MA:0001394
xref: ncithesaurus:Middle_Phalanx_of_the_Hand
xref: SCTID:113223004
is_a: UBERON:0001436 ! phalanx of finger
is_a: UBERON:0004301 ! middle phalanx
relationship: part_of UBERON:0002389
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: distally_connected_to UBERON:0001436 ! phalanx of finger
relationship: part_of UBERON:0002389 ! hand digit
relationship: proximally_connected_to UBERON:0001436 ! phalanx of finger
[Term]
id: UBERON:0003865
name: distal phalanx of finger
def: "A distal phalanx that is part of a finger [Obol]." [OBOL:automatic]
comment: This is typically proximally connected to the middle phalanx of finger, except in some cases such as the human thumb, where it connects to the proximal phalanx. It always connects to some phalanx, by definition
synonym: "distal phalanx of hand" EXACT []
synonym: "hand distal phalanx" EXACT [MA:0001388]
synonym: "terminal phalanx of hand" EXACT [UBERON:cjm]
synonym: "ungual phalanx of hand" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679]
xref: FMA:75818
xref: MA:0001388
xref: ncithesaurus:Distal_Phalanx_of_Hand
xref: SCTID:182001007
is_a: UBERON:0001436 ! phalanx of finger
is_a: UBERON:0004300 ! distal phalanx
relationship: part_of UBERON:0002389
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0009552 ! distal segment of hand digit
relationship: proximally_connected_to UBERON:0001436 ! phalanx of finger
[Term]
id: UBERON:0003866
name: middle phalanx of toe
def: "A middle phalanx that is part of a toe [Obol]." [OBOL:automatic]
synonym: "foot middle phalanx" EXACT [MA:0001386]
synonym: "middle phalanx of foot" EXACT []
xref: FMA:75829
xref: MA:0001386
xref: SCTID:83207005
is_a: UBERON:0001449 ! phalanx of toe
is_a: UBERON:0004301 ! middle phalanx
relationship: part_of UBERON:0001466
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: distally_connected_to UBERON:0001449 ! phalanx of toe
relationship: part_of UBERON:0001466 ! foot digit
relationship: proximally_connected_to UBERON:0001449 ! phalanx of toe
[Term]
id: UBERON:0003867
name: distal phalanx of toe
def: "A distal phalanx that is part of a toe [Obol]." [OBOL:automatic]
comment: This is typically proximally connected to the middle phalanx of toe, except in some cases such as the human big toe, where it connects to the proximal phalanx. It always connects to some phalanx, by definition
synonym: "distal phalanx of foot" EXACT []
synonym: "foot distal phalanx" EXACT [MA:0001380]
synonym: "terminal phalanx of foot" EXACT [UBERON:cjm]
synonym: "terminal phalanx of hindlimb" EXACT [UBERON:cjm]
synonym: "ungual phalanx of foot" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679]
synonym: "ungual phalanx of hindlimb" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679]
xref: FMA:75830
xref: MA:0001380
xref: ncithesaurus:Distal_Phalanx_of_Foot
xref: SCTID:361797001
is_a: UBERON:0001449 ! phalanx of toe
is_a: UBERON:0004300 ! distal phalanx
relationship: part_of UBERON:0001466
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0009553 ! distal segment of foot digit
relationship: proximally_connected_to UBERON:0001449 ! phalanx of toe
[Term]
id: UBERON:0003868
name: proximal phalanx of toe
def: "A proximal phalanx that is part of a toe [Obol]." [OBOL:automatic]
synonym: "foot proximal phalanx" EXACT [MA:0001387]
synonym: "proximal phalanx of foot" EXACT []
synonym: "proximal phalanx of foot digit" EXACT []
synonym: "proximal phalanx of hind digit" EXACT []
synonym: "proximal phalanx of pes" EXACT []
xref: FMA:75828
xref: MA:0001387
xref: ncithesaurus:Proximal_Phalanx_of_Foot
xref: SCTID:85533000
is_a: UBERON:0001449 ! phalanx of toe
is_a: UBERON:0004302 ! proximal phalanx
relationship: part_of UBERON:0001466
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit
relationship: proximally_connected_to UBERON:0001448 ! metatarsal bone
[Term]
id: UBERON:0003869
name: presumptive ganglion
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0000045
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0000045 ! ganglion
relationship: develops_into UBERON:0000045 ! ganglion
[Term]
id: UBERON:0003874
name: presumptive ventricle
is_obsolete: true
[Term]
id: UBERON:0003876
name: subdivision of hippocampus
comment: do not include ABA:HIP
synonym: "hippocampus region" RELATED [MA:0002428]
synonym: "hippocampus subdivision" EXACT [FMA:74041]
synonym: "subdivision of hippocampus" EXACT []
xref: FMA:74041
xref: MA:0002428
xref: SCTID:361561007
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0001954 ! Ammon's horn
[Term]
id: UBERON:0003881
name: CA1 field of hippocampus
synonym: "CA1" EXACT []
synonym: "CA1 field" EXACT []
synonym: "CA1 field of Ammon's horn" EXACT []
synonym: "CA1 field of cornu ammonis" EXACT []
synonym: "CA1 field of hippocampus" EXACT []
synonym: "cornu ammonis 1" EXACT [NIF_GrossAnatomy:birnlex_1197]
synonym: "hippocampus CA1" EXACT []
synonym: "prosubiculum = distal ca1" EXACT [NIF_GrossAnatomy:birnlex_1197]
synonym: "regio i cornus ammonis" EXACT [FMA:74042, FMA:TA]
synonym: "regio i hippocampi proprii" EXACT [FMA:74042, FMA:TA]
synonym: "regio superior" EXACT [NIF_GrossAnatomy:birnlex_1197]
synonym: "regio superior of the hippocampus" EXACT [FMA:74042]
synonym: "region 1 of Ammon's horn" EXACT []
synonym: "region i of ammon's horn" EXACT [FMA:74042]
synonym: "region i of hippocampus proper" EXACT [FMA:74042]
xref: ABA:CA1
xref: EFO:0002454
xref: FMA:74042
xref: MA:0000950
xref: ncithesaurus:CA1_Field_of_the_Cornu_Ammonis
xref: NIF_GrossAnatomy:birnlex_1197
property_value: "spatially_disjoint_from" UBERON:0003882
property_value: "spatially_disjoint_from" UBERON:0003883
is_a: UBERON:0003876 ! subdivision of hippocampus
[Term]
id: UBERON:0003882
name: CA2 field of hippocampus
synonym: "CA2" EXACT []
synonym: "CA2 field" EXACT []
synonym: "CA2 field of Ammon's horn" EXACT []
synonym: "CA2 field of cornu ammonis" EXACT []
synonym: "CA2 field of hippocampus" EXACT []
synonym: "hippocampus CA2" EXACT []
synonym: "regio ii cornus ammonis" EXACT [FMA:74044, FMA:TA]
synonym: "regio ii hippocampi proprii" EXACT [FMA:74044, FMA:TA]
synonym: "region 2 of Ammon's horn" EXACT []
synonym: "region ii of ammon's horn" EXACT [FMA:74044]
synonym: "region ii of hippocampus proper" EXACT [FMA:74044]
xref: ABA:CA2
xref: EFO:0002455
xref: FMA:74044
xref: MA:0000951
xref: ncithesaurus:CA2_Field_of_the_Cornu_Ammonis
xref: NIF_GrossAnatomy:birnlex_1362
property_value: "spatially_disjoint_from" UBERON:0003881
property_value: "spatially_disjoint_from" UBERON:0003883
is_a: UBERON:0003876 ! subdivision of hippocampus
[Term]
id: UBERON:0003883
name: CA3 field of hippocampus
def: "Region III of hippocampus proper is a portion of the hippocampal formation. Region CA3 receives input along the mossy fibers from granule cells in the dentate gyrus (DG) and from projection cells in entorhinal cortex along the perforant path. The mossy fiber pathway terminates in stratum lucidum while the perforant path passes through stratum lacunosum and terminates in stratum moleculare. The inputs from the medial septum and diagonal band of Broca terminate in stratum radiatum, along with commisural connections from the contralateral hippocampus. The pyramidal cells in CA3 (of which there are approximately 200,000 in each hemisphere in the rat) send some axons back to the hilus, but the majority project to regions CA2 and CA1 (a pathway called the Schaffer collaterals), in addition to a significant number of connections that terminate within CA3 (called recurrent connections). Both the recurrent connections and the Schaffer collaterals terminate preferentially in the septal or dorsal direction from the originating cells. CA3 also sends a small set of output fibers to the lateral septum. The region is conventionally divided into 3 divisions. CA3a is the part of the cell band which is most distal from the dentate (and closest to CA1). CA3b is the middle part of the band nearest to the fimbria/fornix connection. CA3c is the most proximal to the dentate, inserting into the hilus. The region overall has been considered to be the 'pacemaker' of the hippocampus. In CA3 much of the synchronous bursing activity associated with interictal epileptiform activity appears to be generated. The excitatory collateral interconnectivity appears to be the property of CA3 most responsible for this. CA3, unlike other regions, has pyramidal cell axon collaterals ramifying extensively with local region and making excitatory contacts with neighbors. CA3 has been implicated in a number of working theories on memory and learning hippocampal processes. Oscillatory rhythms (10-30Hz) are cholinergically driven patterns that depend on coupling of interneurons and pyramidal cell axons via gap junctions as well as glutaminergic (excitatory) and GABAergic (inhibitory) synapses. Sharp EEG waves seen here are also implicated in memory consolidation." [Wikipedia:Region_III_of_hippocampus_proper]
synonym: "CA3" EXACT []
synonym: "CA3 field" EXACT []
synonym: "CA3 field of Ammon's horn" EXACT []
synonym: "CA3 field of cornu ammonis" EXACT []
synonym: "CA3 field of hippocampus" EXACT []
synonym: "hippocampus CA3" EXACT []
synonym: "regio hippocampi proprii III; regio III cornus ammonis; CA3" RELATED LATIN [Wikipedia:Region_III_of_hippocampus_proper]
synonym: "regio iii cornus ammonis" EXACT [FMA:74045, FMA:TA]
synonym: "regio iii hippocampi proprii" EXACT [FMA:74045, FMA:TA]
synonym: "regio inferior" EXACT [NIF_GrossAnatomy:birnlex_1204]
synonym: "region 3 of Ammon's horn" EXACT []
synonym: "region iii of ammon's horn" EXACT [FMA:74045]
synonym: "region iii of hippocampus proper" EXACT [FMA:74045]
xref: ABA:CA3
xref: EFO:0002456
xref: FMA:74045
xref: http://upload.wikimedia.org/wikipedia/commons/a/ab/HippocampalRegions.jpg
xref: MA:0000952
xref: ncithesaurus:CA3_Field_of_the_Cornu_Ammonis
xref: NIF_GrossAnatomy:birnlex_1204
property_value: "spatially_disjoint_from" UBERON:0003881
property_value: "spatially_disjoint_from" UBERON:0003882
is_a: UBERON:0003876 ! subdivision of hippocampus
[Term]
id: UBERON:0003884
name: CA4 field of hippocampus
comment: consider obsoleting. consider - CA3c, hilus
synonym: "CA4" EXACT []
synonym: "CA4 field" EXACT []
synonym: "CA4 field of Ammon's horn" EXACT []
synonym: "CA4 field of cornu ammonis" EXACT []
synonym: "hippocampus CA4" EXACT []
synonym: "regio iv cornus ammonis" EXACT [FMA:75741, FMA:TA]
synonym: "regio iv hippocampi proprii" EXACT [FMA:75741, FMA:TA]
synonym: "region 4 of Ammon's horn" EXACT []
synonym: "region iv of ammon's horn" EXACT [FMA:75741]
synonym: "region iv of hippocampus proper" EXACT [FMA:75741]
xref: EFO:0002457
xref: FMA:75741
xref: MA:0000953
xref: ncithesaurus:CA4_Field_of_the_Cornu_Ammonis
is_a: UBERON:0003876 ! subdivision of hippocampus
[Term]
id: UBERON:0003885
name: mesometrium
def: "A mesentery that is part of a uterus [Obol]." [OBOL:automatic]
synonym: "mesentery of uterus" RELATED [FMA:19816, http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html, MA:0002931]
xref: FMA:19816
xref: MA:0002931
xref: SCTID:250172001
is_a: UBERON:0001297 ! serosa of uterus
is_a: UBERON:0002095 ! mesentery
relationship: part_of UBERON:0000995
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0000995 ! uterus
relationship: part_of UBERON:0000995 {source="MA"} ! uterus
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0003886
name: body cavity precursor
comment: grouping class
is_a: UBERON:0002553 ! anatomical cavity
relationship: develops_into UBERON:0002323
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: develops_into UBERON:0002323 ! body cavity
relationship: develops_into UBERON:0002323 ! body cavity
relationship: surrounded_by UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003887
name: intraembryonic coelom
def: "In the development of the human embryo the intraembryonic coelom (or somatic coelom) is a portion of the conceptus forming in the mesoderm. During the second week of development, the lateral mesoderm splits into a dorsal somatic mesoderm (somatopleure) and a ventral splanchnic mesoderm (splanchnopleure). The resulting cavity between the somatopleure and splanchnopleure is called the intraembryonic coelom. This space will give rise to the thoracic and abdominal cavities. It briefly has a connection with the extraembryonic coelom[WP]." [Wikipedia:Intraembryonic_coelom]
comment: TODO - add spatial relationships to halves of LPM. Note the OG places XAO and ZFA coelem terms here. Todo: check ZFA, which appears to be a structure present in adults
synonym: "somatic coelom" EXACT [Wikipedia:Intraembryonic_coelom]
xref: EHDAA:251
xref: EMAPA:16088
xref: ncithesaurus:Intraembryonic_Coelom
xref: VHOG:0000316
is_a: UBERON:0003886 ! body cavity precursor
relationship: develops_from UBERON:0003081 {source="Wikipedia"} ! lateral plate mesoderm
[Term]
id: UBERON:0003888
name: extraembryonic coelom
def: "cavity between Heuser's membrane and the Trophoblast[WP]." [Wikipedia:Extraembryonic_coelom]
synonym: "chorion cavity" EXACT [EHDAA2:0000246]
synonym: "chorionic cavity" EXACT [EHDAA2:0000246]
synonym: "exocoelomic cavity " RELATED [VHOG:0001671]
synonym: "extraembryonic celom" EXACT [FMA:63943]
synonym: "extraembryonic coelomic cavity" RELATED [VHOG:0001671]
xref: EHDAA2:0000246
xref: EHDAA:146
xref: EMAPA:16081
xref: FMA:63943
xref: ncithesaurus:Extraembryonic_Coelom
xref: SCTID:362843009
xref: VHOG:0001671
is_a: UBERON:0003886 ! body cavity precursor
[Term]
id: UBERON:0003889
name: fallopian tube
def: "Two very fine tubes lined with ciliated epithelia, leading from the ovaries of female mammals into the uterus, via the utero-tubal junction[WP]. Embryos have two pairs of ducts to let gametes out of the body; one pair (the Mullerian ducts) develops in females into the Fallopian tubes, uterus and vagina, while the other pair (the Wolffian ducts) develops in males into the epididymis and vas deferens." [Wikipedia:Fallopian_tube]
comment: http://en.wikipedia.org/wiki/Talk:Fallopian_tube#Homology
subset: uberon_slim
synonym: "fallopian tubes" RELATED []
synonym: "mammalian oviduct" EXACT [http://sourceforge.net/tracker/?func=detail&aid=3293337&group_id=36855&atid=440764]
synonym: "tuba uterina" RELATED LATIN [Wikipedia:Fallopian_tube]
synonym: "uterine tube" RELATED []
xref: EFO:0000974
xref: EV:0100112
xref: FMA:18245
xref: GAID:365
xref: galen:FallopianTube
xref: http://upload.wikimedia.org/wikipedia/commons/6/68/Scheme_female_reproductive_system-en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Scheme_female_reproductive_system-en.svg/200px-Scheme_female_reproductive_system-en.svg.png
xref: MA:0000385
xref: MESH:A.05.360.319.114.373
xref: ncithesaurus:Fallopian_Tube
xref: OpenCyc:Mx4rvViVeZwpEbGdrcN5Y29ycA
xref: SCTID:181463001
is_a: UBERON:0000993 ! oviduct
relationship: connects UBERON:0000995 ! uterus
relationship: connects UBERON:0001179 ! peritoneal cavity
relationship: develops_from UBERON:0003890 ! Mullerian duct
relationship: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003890
name: Mullerian duct
alt_id: UBERON:0005318
def: "paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin[WP]. develops either by lengthwise splitting of the archinephric duct (in chondrichthyans and some amphibians) or by a elongated invagination of the coelomic epithelium (other vertebrates) In males, the oviducts regress. The cranial end of the oviduct maintains an opening into the coelom (which primitively may have been the anteriormost coelomic funnels connecting the nephrocoel with the coelom). This opening is the ostium tubae[USM]." [GO:0061205, http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html, Wikipedia:Paramesonephric_duct]
comment: Development notes: Sertoli cells secrete anti-Mullerian hormone (AMH) inducing the demise of this duct
synonym: "Müllerian duct" EXACT []
synonym: "paramesonephric duct" EXACT [EMAPA:27665]
xref: AAO:0010141
xref: EMAPA:27665
xref: GAID:1309
xref: http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png
xref: MESH:A.16.254.570
xref: ncithesaurus:Mullerian_Duct
xref: RETIRED_EHDAA2:0001399
xref: SCTID:308802006
xref: VHOG:0001199
xref: XAO:0000330
property_value: UBPROP:0000001 "Transient developmental organ which gives rise to oviducts in female (documented to persist in some male frogs).[AAO]" xsd:string
is_a: UBERON:0000058 ! duct
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003891
name: stroma
def: "connective, non-functional supportive framework of a biological cell, tissue, or organ. Contrast with parenchyma." [Wikipedia:Stroma_of_ovary_%28animal_tissue%29]
xref: FMA:81494
xref: ncithesaurus:Stroma_Connective_Tissue
is_a: UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0003893
name: capsule
def: "a cover or envelope partly or wholly surrounding a structure. Examples: egg shell, articular capsules, renal capsules[WP]." [Wikipedia:Capsule_(anatomy)]
comment: see also: protective structure surrounding some species of bacteria and fungi. Note that FMA has classes such as Articular capsule that are not subtypes of Capsule (which is undefined in FMA). GO has 'capsule' which is a fungal structure, and 'external encapsulating structure' which is restricted to cells
subset: grouping_class
xref: EHDAA:4739
xref: EHDAA:9061
xref: FMA:85272
xref: galen:Capsule
is_a: UBERON:0000158 ! membranous layer
relationship: surrounds UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003894
name: liver primordium
def: "A small endodermal thickening in the foregut adjacent to the transverse septum. Invaginates forming the hepatic diverticulum." [ISBN:3211492755]
comment: Todo - check hepatic plate; check syns
subset: vertebrate_core
synonym: "embryological hepatic plate" EXACT [UBERON:cjm]
synonym: "hepatic plate" RELATED [EHDAA2:0000744]
synonym: "liver bud" RELATED INCONSISTENT [XAO:0003266, ZFA:0000124]
synonym: "primordium of the liver" EXACT [ncithesaurus:Primordium_of_the_Liver]
xref: AAO:0011058
xref: EFO:0003428
xref: EHDAA2:0000744
xref: EHDAA:973
xref: EMAPA:16847
xref: ncithesaurus:Hepatic_Cord
xref: ncithesaurus:Primordium_of_the_Liver
xref: TAO:0000124
xref: XAO:0003266
xref: ZFA:0000124
is_a: UBERON:0001048 {source="XAO"} ! primordium
relationship: develops_into UBERON:0002107
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0002107 ! liver
disjoint_from: UBERON:0005452 ! hepatic plate
relationship: develops_from UBERON:0001041 {source="XAO"} ! foregut
relationship: develops_into UBERON:0002107 ! liver
relationship: part_of UBERON:0000925 {source="EHDAA2:0000572"} ! endoderm
[Term]
id: UBERON:0003895
name: hypaxial myotome region
def: "Portion of myotome that is ventral to the horizontal septum" [ISBN10:0073040584]
synonym: "body wall muscle" RELATED [XAO:0003228]
synonym: "hypaxial myotome region" EXACT [ZFA:0001085]
xref: TAO:0001085
xref: ZFA:0001085
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0003082 ! myotome
[Term]
id: UBERON:0003896
name: muscle of body wall
def: "A muscle organ that is part of a body wall [Obol]." [OBOL:automatic]
comment: obsoleted as it grouped together a worm-specific structure (BTO) with the vertebrate structure (which develops from the myotome)
synonym: "wall muscle" RELATED [BTO:0001863]
is_obsolete: true
consider: UBERON:0004462
[Term]
id: UBERON:0003897
name: axial muscle
def: "A skeletal muscle of the trunk or head." []
xref: EHDAA2:0000159
xref: EHDAA:5982
xref: EMAPA:18166
xref: EMAPA:18167
xref: RETIRED_EHDAA2:0000160
xref: TAO:0001954
is_a: UBERON:0001134 ! skeletal muscle tissue
union_of: UBERON:0003898 ! skeletal muscle of trunk
union_of: UBERON:0003899 ! skeletal muscle of head
[Term]
id: UBERON:0003898
name: skeletal muscle of trunk
def: "A skeletal muscle of the trunk." []
synonym: "skeletal muscle of torso" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of torso" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of trunk" EXACT [OBOL:automatic]
synonym: "torso skeletal muscle" EXACT [OBOL:automatic]
synonym: "torso skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "trunk skeletal muscle" EXACT [OBOL:automatic]
synonym: "trunk skeletal muscle tissue" EXACT [OBOL:automatic]
xref: SCTID:244848007
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0002100
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003899
name: skeletal muscle of head
def: "A skeletal muscle of the head." []
synonym: "adult head skeletal muscle" EXACT [OBOL:automatic]
synonym: "adult head skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "head skeletal muscle" EXACT [OBOL:automatic]
synonym: "head skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of adult head" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of adult head" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of head" EXACT [OBOL:automatic]
xref: SCTID:244718003
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0000033
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003900
name: epaxial myotome region
def: "Portion of myotome that is dorsal to the horizontal septum" [ISBN10:0073040584]
synonym: "epaxial myotome regions" EXACT PLURAL [ZFA:0001084]
xref: TAO:0001084
xref: ZFA:0001084
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0003082 ! myotome
[Term]
id: UBERON:0003901
name: horizontal septum
def: "A logitudinal sheet of continuous connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses; each is destined to become, respectively, the epaxial and hyopaxial musculature." [ISBN10:0073040584, ZFA:0000671]
synonym: "horizontal myoseptum" EXACT [ZFA:0000671]
xref: EFO:0003555
xref: TAO:0000671
xref: ZFA:0000671
property_value: UBPROP:0000001 "A connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass myoseptum (TAO:0001089)[TAO]" xsd:string
is_a: UBERON:0003037 ! septum
relationship: adjacent_to UBERON:0003895 ! hypaxial myotome region
relationship: adjacent_to UBERON:0003900 ! epaxial myotome region
[Term]
id: UBERON:0003902
name: retinal neural layer
def: "The layer of nerve cells in the retina[XAO]. The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407, XAO:0003216]
comment: editor note - we follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers; the neural layers are further divided into 9 layers. Note that in MA this class is a leaf node.
subset: vertebrate_core
synonym: "neural layer of retina" EXACT [FMA:58628]
synonym: "neural retina" EXACT [XAO:0003216, ZFA:0000046]
synonym: "neural retinal epithelium" RELATED [MA:000027]
synonym: "neuroretina" EXACT [ZFA:0000046]
synonym: "stratum nervosum (retina)" EXACT [FMA:58628]
xref: AAO:0011095
xref: BTO:0000929
xref: EHDAA2:0001253
xref: EHDAA:4763
xref: EMAPA:17171
xref: EMAPA:18590
xref: FMA:58628
xref: MA:0000277
xref: ncithesaurus:Neural_Retina
xref: TAO:0000046
xref: VHOG:0000535
xref: XAO:0003216
xref: ZFA:0000046
is_a: UBERON:0001781 ! layer of retina
relationship: develops_from UBERON:0005425
intersection_of: UBERON:0001781 ! layer of retina
intersection_of: develops_from UBERON:0005425 ! presumptive neural retina
relationship: develops_from UBERON:0005425 ! presumptive neural retina
relationship: induced_by UBERON:0005426 ! lens vesicle
[Term]
id: UBERON:0003903
name: bursa of Fabricius
def: "an epithelial and lymphoid organ that develops as a dorsal diverticulum of the proctadael region of the cloaca in birds. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]. The bursa is an organ found in birds involved in B cell differentiation[GO]." [GO:0048540, Wikipedia:Bursa_of_Fabricius]
subset: organ_slim
xref: BTO:0001699
xref: GAID:1205
xref: MESH:A.13.163
is_a: UBERON:0011510 ! cloacal bursa
[Term]
id: UBERON:0003904
name: bursal plica
def: "Follicle containing part of bursa of Fabricius. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]." [GOC:cjm]
synonym: "bursal fold" EXACT []
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
relationship: part_of UBERON:0003903 ! bursa of Fabricius
[Term]
id: UBERON:0003905
name: bursal follicle
def: "Follicle within the plicae of bursa of Fabricius." [GOC:cjm]
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
relationship: part_of UBERON:0003904 ! bursal plica
[Term]
id: UBERON:0003906
name: cardiac jelly
def: "Portion of extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates." [ZFA:0001318]
subset: vertebrate_core
xref: EHDAA:1271
xref: EHDAA:1279
xref: EHDAA:1922
xref: EHDAA:1930
xref: EHDAA:426
xref: EHDAA:442
xref: EHDAA:450
xref: EHDAA:458
xref: EHDAA:466
xref: EHDAA:474
xref: EHDAA:772
xref: EHDAA:780
xref: EHDAA:788
xref: EHDAA:800
xref: EHDAA:808
xref: ncithesaurus:Cardiac_Jelly
xref: RETIRED_EHDAA2:0000212
xref: TAO:0001318
xref: VHOG:0000936
xref: XAO:0004120
xref: ZFA:0001318
property_value: UBPROP:0000001 "The extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates.[TAO]" xsd:string
is_a: UBERON:0000479 ! tissue
relationship: adjacent_to UBERON:0002165 ! endocardium
relationship: adjacent_to UBERON:0002349 ! myocardium
[Term]
id: UBERON:0003907
name: left atrioventricular canal
xref: EHDAA2:0000935
xref: EHDAA:5336
xref: FMA:71123
is_a: UBERON:0002087 ! atrioventricular canal
[Term]
id: UBERON:0003908
name: right atrioventricular canal
xref: EHDAA2:0001719
xref: EHDAA:5338
xref: FMA:71122
is_a: UBERON:0002087 ! atrioventricular canal
[Term]
id: UBERON:0003909
name: sinusoid
def: "small blood vessel similar to a capillary but with a fenestrated endothelium. Sinusoids are found in the liver, lymphoid tissue, endocrine organs, and hematopoietic organs such as the bone marrow and the spleen. Sinusoids found within terminal villi of the placenta are not comparable to these; they possess a continuous endothelium and complete basal lamina[WP]." [Wikipedia:Sinusoid_(blood_vessel)]
comment: the WP def seems to fit FMA:63198 discontinuous sinusoid (undefined). ZFA has ZFA:0005261 sinusoidal blood vessel endothelium - but not sinusoidal blood vessel
subset: vertebrate_core
synonym: "sinusoidal blood vessel" EXACT []
synonym: "sinusoidal blood vessel endothelium" EXACT [ZFA:0005261]
xref: FMA:63131
xref: TAO:0005261
xref: ZFA:0005261
property_value: UBPROP:0000001 "Fenestrated blood vessel endothelium with pores that are large enough for blood cells to pass. The basal lamina and gap junctions may be discontinuous.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass fenestrated blood vessel endothelium (TAO:0005260)[TAO]" xsd:string
is_a: UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0003910
name: splenic sinusoid
def: "wide vessels in the spleen that drain into trabecular veins[WP]." [Wikipedia:Red_pulp#Sinusoids]
comment: Taxon notes: Whereas man and the rat are in the "sinusal" group, the mouse belongs in the "nonsinusal" group. The red pulp of spleens of rat, dog, man, and many other mammals contains an elaborate plexus of sinuses; that of mouse, cat, pig and others has no true sinuses and relatively few veins leading from the meshes into collecting veins - http://www.informatics.jax.org/greenbook/chapters/chapter13.shtml
synonym: "sinusoidal blood vessel of spleen" EXACT [OBOL:automatic]
xref: FMA:63199
xref: SCTID:9081000
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003497 ! abdomen blood vessel
is_a: UBERON:0003909 ! sinusoid
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0001250
intersection_of: UBERON:0003909 ! sinusoid
intersection_of: part_of UBERON:0001250 ! red pulp of spleen
relationship: part_of UBERON:0001250 ! red pulp of spleen
[Term]
id: UBERON:0003911
name: choroid plexus epithelium
def: "An epithelium that is part of a choroid plexus [Obol]." [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelial tissue" EXACT [OBOL:automatic]
synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "epithelial tissue of choroid plexus" EXACT [OBOL:automatic]
synonym: "epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "epithelium of choroid plexus" EXACT []
xref: FMA:242811
xref: MA:0000824
xref: ncithesaurus:Choroid_Plexus_Epithelium
is_a: UBERON:0005357 ! brain ependyma
relationship: part_of UBERON:0001886
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001886 ! choroid plexus
relationship: part_of UBERON:0001886 ! choroid plexus
[Term]
id: UBERON:0003912
name: chitinous tooth
def: "tooth-like structure composed of chitin." []
is_a: UBERON:0003913 ! tooth-like structure
[Term]
id: UBERON:0003913
name: tooth-like structure
def: "hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food." [GOC:cjm]
comment: see dermal denticle
subset: grouping_class
synonym: "tooth-like organ" EXACT [GOC:cjm]
xref: HAO:0001019
is_a: UBERON:0004765 ! skeletal element
[Term]
id: UBERON:0003914
name: epithelial tube
def: "Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GO:0060562, PMID:12526790]
xref: AEO:0000114
xref: EHDAA2:0003114
xref: FBbt:00007474
is_a: UBERON:0000025 ! tube
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0003915
name: endothelial tube
def: "Any endothelium that has the quality of being cylindrical [Obol]." [OBOL:automatic]
is_a: UBERON:0001986 ! endothelium
is_a: UBERON:0003914 ! epithelial tube
[Term]
id: UBERON:0003916
name: fat pad
def: "an accumulation of adipose tissue[GO]. An accumulation of adipose tissue (fat cells) enclosed in fibrous tissue[BTO]." [BTO:0000444, GO:0060613]
comment: FMA says isa organ
synonym: "fat body" RELATED [FMA:58616]
xref: AAO:0000157
xref: BTO:0000444
xref: FMA:58616
xref: MA:0002481
xref: XAO:0003050
property_value: UBPROP:0000001 "Anatomical structure associated with the gonads which vary in form among amphibians but are primarily composed of adipose tissue and are thought to be a source of nutrients for the gonads.[AAO]" xsd:string
is_a: UBERON:0001013 ! adipose tissue
[Term]
id: UBERON:0003917
name: arthropod fat body
def: "an insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism." [GO:0007503]
subset: organ_slim
synonym: "fat body" EXACT SENSU [FBbt:00005066]
xref: BTO:0000442
xref: FBbt:00001704
xref: FBbt:00005066
xref: GAID:1213
xref: MESH:A.13.365
xref: MIAA:0000096
xref: TADS:0000321
xref: TGMA:0001856
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0003918
name: kidney mesenchyme
def: "Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney[GO]." [GO:0072074]
comment: check this
synonym: "mesenchyme of kidney" EXACT []
is_a: UBERON:0003104 ! mesenchyme
relationship: develops_into UBERON:0002113
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_into UBERON:0002113 ! kidney
relationship: develops_into UBERON:0002113 ! kidney
[Term]
id: UBERON:0003919
name: mesenchyme of adult kidney
is_obsolete: true
[Term]
id: UBERON:0003920
name: venous blood vessel
synonym: "segment of venous tree organ" EXACT [FMA:86188]
synonym: "venous tree organ segment" EXACT [FMA:86188]
xref: FMA:86188
xref: MA:0000066
is_a: UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0004582
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0004582 ! venous system
relationship: part_of UBERON:0004582 ! venous system
[Term]
id: UBERON:0003921
name: pancreas primordium
def: "embryonic structure that develops into pancreatic bud." [http://en.wikipedia.org/wiki/Pancreas#Embryological_development]
comment: AO notes: in EHDAA2 this has dorsal and ventral primordia as parts. the buds are part of the primordium, with the ducts developing from the buds; only parenchyma and ducts have contribution from buds. Terminology notes: revisit after standardizing terms 'primordium', 'anlagen', 'bud'
subset: vertebrate_core
synonym: "pancreatic anlage" RELATED []
synonym: "pancreatic primordium" EXACT []
synonym: "primordial pancreas" RELATED [FMA:79792]
xref: EFO:0003434
xref: EHDAA2:0001382
xref: EHDAA:2163
xref: EMAPA:17066
xref: FMA:79792
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png
xref: TAO:0000254
xref: XAO:0001101
xref: ZFA:0000254
is_a: UBERON:0001048 {source="EHDAA2"} ! primordium
relationship: develops_from UBERON:0000925 {source="Wikipedia"} ! endoderm
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0007026 ! primitive gut
[Term]
id: UBERON:0003922
name: pancreatic bud
def: "The embryonic pancreas develops from two separate anlagen in the foregut epithelium, one dorsal and two ventral pancreatic buds[PMID]. In humans, an embryonic structure that is an outgrowth of the duodenum during embryogenesis - joins together to form the adult pancreas[WP]." [PMID:16417468, Wikipedia:Pancreatic_bud]
synonym: "pancreatic anlage" RELATED []
xref: EFO:0003470
xref: http://upload.wikimedia.org/wikipedia/commons/d/db/Gray982.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/Suckale08FBS_fig1_pancreas_development.jpeg/300px-Suckale08FBS_fig1_pancreas_development.jpeg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png
xref: ncithesaurus:Pancreatic_Bud
xref: SCTID:360398004
xref: TAO:0001390
xref: ZFA:0001390
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac
relationship: develops_from UBERON:0001041 {source="Wikipedia:Pancreas#Embryological_development"} ! foregut
relationship: develops_from UBERON:0001555 ! digestive tract
relationship: develops_from UBERON:0002114 {exception="zebrafish", source="Wikipedia:Pancreatic_bud"} ! duodenum
relationship: develops_from UBERON:0009497 {source="EHDAA2-inferred"} ! epithelium of foregut-midgut junction
relationship: part_of UBERON:0003921 {source="EHDAA2"} ! pancreas primordium
[Term]
id: UBERON:0003923
name: dorsal pancreatic bud
def: "pancreatic bud that gives rise to the accessory pancreatic duct." [Wikipedia:Pancreatic_bud]
subset: vertebrate_core
synonym: "dorsal pancreatic anlage" RELATED []
synonym: "pancreas dorsal primordium duct bud" EXACT [EHDAA2:0001385]
synonym: "pancreas primordium dorsal bud" EXACT []
synonym: "posterior pancreatic anlage" RELATED []
synonym: "posterior pancreatic bud" RELATED []
xref: AAO:0011031
xref: EFO:0003465
xref: EHDAA2:0001385
xref: EMAPA:17067
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png
xref: SCTID:361435005
xref: TAO:0001370
xref: VHOG:0001428
xref: XAO:0000467
xref: ZFA:0001370
property_value: UBPROP:0000001 "The pancreatic bud that gives rise to the accessory pancreatic duct.[AAO]" xsd:string
is_a: UBERON:0003922 ! pancreatic bud
relationship: develops_from UBERON:0001045 {source="XAO"} ! midgut
relationship: induced_by UBERON:0002328 {source="PMID:16417468", gci_relation="part_of", gci_filler="NCBITaxon:10088"} ! notochord
relationship: induced_by UBERON:0005805 {source="PMID:16417468", gci_relation="part_of", gci_filler="NCBITaxon:10088"} ! dorsal aorta
relationship: part_of UBERON:0010375 {source="EHDAA2"} ! pancreas dorsal primordium
[Term]
id: UBERON:0003924
name: ventral pancreatic bud
def: "pancreatic bud that gives rise to the major pancreatic duct." [Wikipedia:Pancreatic_bud]
comment: Development notes: the ventral pancreas and liver are derived from a common precursor cell population[PMID:16417468]. TODO - add this relationship. // The ventral pancreatic bud becomes the head and uncinate process, and comes from the hepatic diverticulum[WP]
subset: vertebrate_core
synonym: "anterior pancreatic anlage" RELATED []
synonym: "anterior pancreatic bud" RELATED []
synonym: "pancreas primordium ventral bud" EXACT []
synonym: "pancreas ventral primordium duct bud" EXACT [EHDAA2:0001389]
synonym: "ventral pancreatic anlage" RELATED []
xref: AAO:0011111
xref: EFO:0003464
xref: EHDAA2:0001389
xref: EMAPA:17256
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png
xref: SCTID:361437002
xref: TAO:0001369
xref: VHOG:0001429
xref: XAO:0001103
xref: ZFA:0001369
is_a: UBERON:0003922 ! pancreatic bud
relationship: develops_from UBERON:0008835 {source="PMID:16417468", source="WP"} ! hepatic diverticulum
relationship: part_of UBERON:0010376 {source="EHDAA2"} ! pancreas ventral primordium
[Term]
id: UBERON:0003925
name: photoreceptor inner segment layer
subset: vertebrate_core
synonym: "retina photoreceptor layer inner segment" EXACT [MA:0002471]
xref: MA:0002471
xref: TAO:0001465
xref: VHOG:0001172
xref: ZFA:0001465
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: adjacent_to UBERON:0001788 ! outer limiting layer of retina
relationship: part_of UBERON:0001787 {source="MA"} ! photoreceptor layer of retina
[Term]
id: UBERON:0003926
name: photoreceptor outer segment layer
subset: vertebrate_core
synonym: "retina photoreceptor layer outer segment" EXACT [MA:0002472]
xref: MA:0002472
xref: TAO:0001466
xref: VHOG:0001173
xref: ZFA:0001466
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: adjacent_to UBERON:0001782 ! pigmented layer of retina
relationship: part_of UBERON:0001787 {source="MA"} ! photoreceptor layer of retina
[Term]
id: UBERON:0003927
name: macula lagena
def: "This term was obsoleted as it was previously defined midleadingly as 'A macula that is part of a cochlea'." [UBERON:cjm]
is_obsolete: true
[Term]
id: UBERON:0003928
name: digestive system duct
def: "A duct that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "duct of digestive system" EXACT [OBOL:automatic]
synonym: "duct of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "gastrointestinal system duct" EXACT [OBOL:automatic]
xref: TAO:0005162
xref: ZFA:0005162
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0001007
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0003929
name: gut epithelium
def: "An epithelium that is part of a digestive tract [Obol]." [OBOL:automatic]
synonym: "digestive tract epithelial tissue" EXACT [OBOL:automatic]
synonym: "digestive tract epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of digestive tract" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gut" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lower gastrointestinal tract" EXACT [OBOL:automatic]
synonym: "epithelium of digestive tract" EXACT [OBOL:automatic]
synonym: "epithelium of gut" EXACT [OBOL:automatic]
synonym: "epithelium of lower gastrointestinal tract" EXACT [OBOL:automatic]
synonym: "gut epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower gastrointestinal tract epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower gastrointestinal tract epithelium" EXACT [OBOL:automatic]
xref: BTO:0000956
xref: EHDAA2:0004567
xref: ncithesaurus:Gut_Epithelium
xref: TAO:0005123
xref: XAO:0003200
xref: ZFA:0005123
property_value: UBPROP:0000001 "Epithelium lining the lumen of the gut.[TAO]" xsd:string
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0001555
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0003930
name: atrioventricular canal endocardium
def: "An endocardium that is part of an atrioventricular canal [Obol]." [OBOL:automatic]
synonym: "AV canal endocardium" EXACT [OBOL:automatic]
synonym: "endocardium of atrioventricular canal" EXACT [OBOL:automatic]
synonym: "endocardium of AV canal" EXACT [OBOL:automatic]
xref: TAO:0002170
xref: XAO:0004124
xref: ZFA:0001616
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002165 ! endocardium
relationship: part_of UBERON:0002087
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0002087 ! atrioventricular canal
relationship: part_of UBERON:0002087 ! atrioventricular canal
[Term]
id: UBERON:0003931
name: diencephalic white matter
def: "White matter that is part of a diencephalon [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "diencephalic tract/commissure" EXACT [ZFA:0000338]
synonym: "white matter of diencephalon" EXACT [FMA:83931]
xref: FMA:83931
xref: TAO:0000338
xref: ZFA:0000338
is_a: UBERON:0003544 ! brain white matter
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002316 ! white matter
intersection_of: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003932
name: cartilaginous element of chondrocranium
def: "A cartilaginous element of chondrocranium. Example: neurocranial trabecula." [UBERON:cjm]
synonym: "cartilage of chondrocranium" EXACT [OBOL:automatic]
synonym: "chondrocranium cartilage" EXACT [ZFA:0001461]
synonym: "neurocranium cartilage" EXACT [ZFA:0001461]
xref: EFO:0003690
xref: TAO:0001461
xref: ZFA:0001461
is_a: UBERON:0003933 ! cranial cartilage
relationship: part_of UBERON:0002241
intersection_of: UBERON:0007844 ! cartilaginous element
intersection_of: part_of UBERON:0002241 ! chondrocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0003933
name: cranial cartilage
def: "A cartilage element that is part of the cranial skeleton." [UBERON:cjm, ZFA:0001458]
synonym: "cartilage of cranium" EXACT [OBOL:automatic]
synonym: "cranium cartilage" EXACT [OBOL:automatic]
xref: TAO:0001458
xref: ZFA:0001458
property_value: UBPROP:0000001 "Cartilage which is part of the cranium.[TAO]" xsd:string
is_a: UBERON:0007844 ! cartilaginous element
relationship: part_of UBERON:0010323
intersection_of: UBERON:0007844 ! cartilaginous element
intersection_of: part_of UBERON:0010323 ! cranial skeletal system
relationship: part_of UBERON:0010323 ! cranial skeletal system
[Term]
id: UBERON:0003934
name: mesenchyme pectoral fin
def: "A mesenchyme that is part of a pectoral fin [Obol]." [OBOL:automatic]
synonym: "mesenchyme of pectoral fin" EXACT [OBOL:automatic]
synonym: "pectoral fin mesenchyme" EXACT [OBOL:automatic]
xref: EFO:0003604
xref: TAO:0001000
xref: ZFA:0001000
property_value: UBPROP:0000001 "Mesenchyme that is part of the pectoral fin.[TAO]" xsd:string
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000151
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000151 ! pectoral fin
relationship: part_of UBERON:0000151 ! pectoral fin
[Term]
id: UBERON:0003935
name: mesenchyme pelvic fin
def: "A mesenchyme that is part of a pelvic fin [Obol]." [OBOL:automatic]
synonym: "mesenchyme of pelvic fin" EXACT [OBOL:automatic]
synonym: "pelvic fin mesenchyme" EXACT [OBOL:automatic]
xref: TAO:0001449
xref: ZFA:0001449
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000152
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000152 ! pelvic fin
relationship: part_of UBERON:0000152 ! pelvic fin
[Term]
id: UBERON:0003936
name: postoptic commissure
synonym: "POC" EXACT [ZFA:0000059]
synonym: "post optic commissure" EXACT [ZFA:0000059]
synonym: "post-optic commissure" EXACT [ZFA:0000059]
xref: EFO:0003478
xref: TAO:0000059
xref: ZFA:0000059
is_a: UBERON:0011590 ! commissure of diencephalon
relationship: part_of UBERON:0003931 ! diencephalic white matter
[Term]
id: UBERON:0003937
name: sex gland
def: "any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction" [MP:0000653]
subset: organ_slim
synonym: "genitalia gland" EXACT [OBOL:automatic]
synonym: "gland of genitalia" EXACT [OBOL:automatic]
synonym: "gland of reproductive system" EXACT [OBOL:automatic]
synonym: "reproductive gland" EXACT [MA:0001751]
synonym: "reproductive system gland" EXACT [OBOL:automatic]
xref: MA:0001751
is_a: UBERON:0002530 ! gland
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000990
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0000990 ! reproductive system
[Term]
id: UBERON:0003938
name: sensory dissociation area
def: "the area of the parietal lobe that integrates tactile and visual stimuli" [MP:0000796]
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001872 ! parietal lobe
[Term]
id: UBERON:0003939
name: transverse gyrus of Heschl
def: "the area of the temporal lobe concerned with hearing[MP]. The transverse temporal gyri (also called Heschl's gyri or Heschl's convolutions) are found in the area of primary auditory cortex in the superior temporal gyrus of the human brain, occupying Brodmann areas 41 and 42. It is the first cortical structure to process incoming auditory information. Anatomically, the transverse temporal gyri are distinct in that they run mediolaterally (towards the center of the brain) rather than dorsiventrally (front to back) as all other temporal lobe gyri run. The Heschl's gyri are named after Richard L. Heschl." [MP:0000803, Wikipedia:Transverse_temporal_gyrus]
synonym: "gyri temporales transversi" RELATED LATIN [Wikipedia:Transverse_temporal_gyrus]
xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Gray730.png
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0001393 ! auditory cortex
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0003941
name: cerebellum anterior vermis
def: "the anterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located anterior to the primary fissure" [MP:0000867]
synonym: "anterior cerebellum vermis" EXACT [MA:0002969]
synonym: "anterior vermis of cerebellum" EXACT [FMA:72255]
synonym: "part of vermal region" EXACT [FMA:72255]
synonym: "vermis of anterior lobe" EXACT [FMA:72255]
synonym: "vermis of anterior lobe of cerebellum" EXACT [FMA:72255]
xref: FMA:72255
xref: MA:0002969
xref: NIF_GrossAnatomy:birnlex_1185
is_a: UBERON:0004720 ! cerebellar vermis
relationship: part_of UBERON:0002131 ! anterior lobe of cerebellum
[Term]
id: UBERON:0003942
name: somatic sensory system
def: "the neural tissue involved in the transmission of sensory signals" [MP:0000959]
comment: TODO - check
is_a: UBERON:0001032 ! sensory system
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000012
intersection_of: UBERON:0001032 ! sensory system
intersection_of: part_of UBERON:0000012 ! somatic nervous system
relationship: part_of UBERON:0000012 ! somatic nervous system
[Term]
id: UBERON:0003943
name: fourth lumbar dorsal root ganglion
def: "the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fourth lumbar vertebra" [MP:0001019]
subset: defined_by_ordinal_series
synonym: "forth lumbar dorsal root ganglion" EXACT [NIF_GrossAnatomy:birnlex_2626]
synonym: "fourth lumbar dorsal root ganglion" EXACT [UBERON:cjm]
synonym: "fourth lumbar spinal ganglion" EXACT [FMA:6338]
synonym: "L4 dorsal root ganglion" EXACT [MP:0001019]
xref: EMAPA:25167
xref: FMA:6338
xref: NIF_GrossAnatomy:birnlex_2626
is_a: UBERON:0002836 {source="FMA"} ! lumbar dorsal root ganglion
[Term]
id: UBERON:0003945
name: somatic motor system
def: "the neural tissue involved in the transmission of motor signals" [MP:0001051]
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000012 ! somatic nervous system
[Term]
id: UBERON:0003946
name: placenta labyrinth
def: "the placental layers where embryonic blood vessels are surrounded by trophoblast cells and maternal blood" [MP:0001716]
comment: Taxon notes: Mouse-human differences: The mouse and human placentas have labyrinthine and villous types of interdigitation between maternal and fetal tissues, respectively ... The mouse placental labyrinth is composed of an intricate network of maternal blood spaces and embryonal blood vessels. Maternal and embryonal blood is separated by a placental barrier that consists of four cellular layers: layer I trophoblasts line the maternal lacunae, trophoblasts in layers II and III form syncytial-like layers, and endothelial cells line the embryonic vessels[doi: 10.1073/pnas.96.14.8138 ]. See also: http://placentation.ucsd.edu/placenta.html
synonym: "labyrinthine layer" EXACT [GO:0060713]
synonym: "labyrinthine layer of placenta" EXACT [GO:0060713]
synonym: "placental labyrinth" EXACT []
property_value: RO:0002161 NCBITaxon:9606
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001987 ! placenta
[Term]
id: UBERON:0003947
name: brain ventricle/choroid plexus
def: "the brain ventricles or their associated choroid plexuses" [MP:0002200]
comment: TODO - check relationship between CP and BV. If this is part of then this class should be obsoleted
is_a: UBERON:0004121 ! ectoderm-derived structure
union_of: UBERON:0001886 ! choroid plexus
union_of: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003948
name: blood-air barrier
def: "the membrane between the capillary blood and alveolar air, comprised of the alveolar epithelium and the capillary epithelium and their adherent basement membranes and epithelial cell cytoplasm" [MP:0002324]
comment: TODO - alveolar lumen
xref: MESH:A.04.411.715.025
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: adjacent_to UBERON:0000178 ! blood
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0003949
name: tubal tonsil
def: "the lymph tissue associated with the pharyngeal opening of the auditory tube" [MP:0002386]
synonym: "auditory tube lymph gland" EXACT [FMA:54975]
synonym: "eustachian amygdala" EXACT [FMA:54975]
synonym: "Gerlach's tonsil" EXACT [FMA:54975]
synonym: "Gerlach's tubal tonsil" EXACT [FMA:54975]
xref: FMA:54975
xref: SCTID:143319002
is_a: UBERON:0002372 ! tonsil
relationship: part_of UBERON:0001735 ! tonsillar ring
[Term]
id: UBERON:0003950
name: inner ear canal
def: "the tubular ducts of the inner ear" [MP:0002729]
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0003951
name: ocular fundus
def: "the posterior concave interior of the eye, consisting of the retina, the choroid, the posterior segment of the sclera, the optic disk, and blood vessels, visible by an ophthalmoscope" [MP:0002864, Wikipedia:Fundus_(eye)]
comment: TODO - check relationships
synonym: "eye fundus" EXACT []
synonym: "fundus" EXACT [HP:0001098]
synonym: "fundus oculi" EXACT []
synonym: "fundus of eye" EXACT []
xref: GAID:908
xref: galen:FundusOculi
xref: MESH:A.09.371.729.313
xref: ncithesaurus:Fundus
xref: RETIRED_EHDAA2:0000583
xref: SCTID:362519003
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001802 ! posterior segment of eyeball
[Term]
id: UBERON:0003952
name: anterior stroma
def: "the anterior segment of the lamellated connective tissue layer of the cornea" [MP:0003093]
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001777 ! substantia propria of cornea
[Term]
id: UBERON:0003953
name: posterior stroma
def: "the posterior segment of the lamellated connective tissue layer of the cornea" [MP:0003094]
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001777 ! substantia propria of cornea
[Term]
id: UBERON:0003954
name: squamoparietal suture
def: "the articulation of the squamous portion of the temporal bones with the parietal bones[MP]. The squamosal suture arches backward from the pterion and connects the temporal squama with the lower border of the parietal: this suture is continuous behind with the short, nearly horizontal parietomastoid suture, which unites the mastoid process of the temporal with the region of the mastoid angle of the parietal[WP]." [MP:0003844, Wikipedia:Squamosal_suture]
synonym: "squamo-parietal suture" EXACT [MP:0003844]
synonym: "squamoparietal suture of skull" EXACT []
synonym: "squamosal suture" RELATED [Wikipedia:Squamosal_suture]
synonym: "squamous suture" RELATED [Wikipedia:Squamosal_suture]
synonym: "squamous suture of skull" RELATED [FMA:52946]
synonym: "sutura squamosa cranii" EXACT LATIN [Wikipedia:Squamosal_suture]
xref: EMAPA:19228
xref: FMA:52946
xref: http://upload.wikimedia.org/wikipedia/commons/a/a8/Gray188-Squamosal_suture.png
xref: SCTID:136248004
xref: SCTID:334174000
is_a: UBERON:0003685 ! cranial suture
relationship: connects UBERON:0000210
relationship: connects UBERON:0001695
intersection_of: UBERON:0003685 ! cranial suture
intersection_of: connects UBERON:0000210 ! tetrapod parietal bone
intersection_of: connects UBERON:0001695 ! squamous part of temporal bone
relationship: connects UBERON:0000210 ! tetrapod parietal bone
relationship: connects UBERON:0001695 ! squamous part of temporal bone
relationship: continuous_with UBERON:0010155 ! parietomastoid suture
[Term]
id: UBERON:0003955
name: molar crown
def: "the part of a molar that is covered by enamel" [MP:0003932]
synonym: "crown of molar tooth" EXACT [FMA:85301]
synonym: "molar tooth crown" EXACT [FMA:85301]
synonym: "molar tooth tooth crown" EXACT [OBOL:automatic]
synonym: "tooth crown of molar tooth" EXACT [OBOL:automatic]
xref: FMA:85301
is_a: UBERON:0003675 ! tooth crown
relationship: part_of UBERON:0003655
intersection_of: UBERON:0003675 ! tooth crown
intersection_of: part_of UBERON:0003655 ! molar tooth
relationship: part_of UBERON:0003655 ! molar tooth
[Term]
id: UBERON:0003956
name: aqueous drainage system
def: "the structures associated with drainage of the aqueous humor from the eye, that include the trabecular meshwork, Schlemm's canal, the uveoscleral network, and the aqueous veins" [MP:0005198]
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001768 ! vascular layer of eyeball
[Term]
id: UBERON:0003957
name: Bruch's membrane
def: "A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina. Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid." [MP:0005239, Wikipedia:Bruch's_membrane]
comment: TODO - check FMA
subset: vertebrate_core
synonym: "basal lamina of choroid" EXACT [FMA:58438]
synonym: "Bruch membrane" EXACT [GAID:914]
synonym: "Bruch's basal membrane" EXACT [FMA:58438]
synonym: "lamina basalis (choroid)" EXACT [FMA:58438]
synonym: "lamina basilis" EXACT [FMA:58438]
xref: FMA:58438
xref: GAID:914
xref: MESH:A.09.371.894.223.250
xref: SCTID:280652000
xref: ZFA:0005562
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001776 ! choroid
[Term]
id: UBERON:0003958
name: long bone epiphyseal ossification zone
def: "The layer of the epiphyseal plate where new bone matrix is deposited" [MP:0006399]
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002495 ! long bone
relationship: part_of UBERON:0002516 ! epiphyseal plate
[Term]
id: UBERON:0003959
name: rete testis
def: "the network of canals at the termination of the straight tubules in the mediastinum testis[MP]. Rete testis is an anastomosing network of delicate tubules located in the hilum of the testicle (mediastinum testis) that carries sperm from the seminiferous tubules to the vasa efferentia[WP]." [MP:0006416, Wikipedia:Rete_testis]
comment: Editors note: add more specific classification e.g. anastomosing network - consider FMA:3726
synonym: "Haller's rete" EXACT [FMA:19834]
xref: EMAPA:18332
xref: FMA:19834
xref: GAID:399
xref: http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b5/Hodenschema.svg/200px-Hodenschema.svg.png
xref: MESH:A.05.360.444.849.600
xref: ncithesaurus:Rete_Testis
xref: SCTID:279617009
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0005156 ! reproductive structure
relationship: channels_from UBERON:0001343 ! seminiferous tubule of testis
relationship: channels_into UBERON:0006946 ! efferent duct
relationship: develops_from UBERON:0005297 {source="Wikipedia"} ! testis sex cord
relationship: part_of UBERON:0005051 ! mediastinum testis
[Term]
id: UBERON:0003960
name: styloid process of temporal bone
def: "slender needle-like pointed projection that runs downward and slightly forward from the base of the inferior surface of the petrous portion of the temporal bone where it joins the tympanic portion; it gives attachment to the styloglossus, stylohyoid, and stylopharyngeus muscles and the stylohyoid and stylomandibular ligaments" [MP:0008023, Wikipedia:Temporal_styloid_process]
comment: Disease notes: Eagle's syndrome
synonym: "processus styloideus ossis temporalis" EXACT [Wikipedia:Temporal_styloid_process]
synonym: "processus styloideus ossis temporalis" RELATED LATIN [Wikipedia:Temporal_styloid_process]
synonym: "styloid process" EXACT [FMA:52877]
synonym: "styloid process of petrous part of temporal bone" EXACT [FMA:52877]
synonym: "temporal styloid process" EXACT [Wikipedia:Temporal_styloid_process]
xref: FMA:52877
xref: http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png
xref: SCTID:138874009
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0004368 {source="MP-implied-by-def"} ! Reichert's cartilage
relationship: part_of UBERON:0001678 ! temporal bone
relationship: part_of UBERON:0008895 {source="Kardong"} ! splanchnocranium
[Term]
id: UBERON:0003961
name: cingulum
def: "the white matter fiber bundle that projects from the cingulate gyrus to the entorhinal cortex in the brain" [MP:0008232]
xref: SCTID:369084007
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0003544 ! brain white matter
[Term]
id: UBERON:0003962
name: pterygopalatine ganglion
def: "the small parasympathetic ganglion that supplies nerve fibers to the lacrimal, nasal, palatine and pharyngeal glands" [MP:0008314, Wikipedia:Pterygopalatine_ganglion]
synonym: "g. pterygopalatinum" RELATED LATIN [Wikipedia:Pterygopalatine_ganglion]
synonym: "Meckel ganglion" EXACT [MP:0008314]
synonym: "Meckel's ganglion" EXACT [FMA:6965]
synonym: "nasal ganglion" EXACT [MP:0008314]
synonym: "palatine ganglion" EXACT [MP:0008314]
synonym: "pterygopalatine ganglia" EXACT [MP:0008314]
synonym: "sphenopalatine ganglion" EXACT [MP:0008314]
synonym: "sphenopalatine parasympathetic ganglion" EXACT [EHDAA2:0001889]
xref: EHDAA2:0001889
xref: FMA:6965
xref: http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray779.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray779.png/200px-Gray779.png
xref: SCTID:280364004
is_a: UBERON:0001808 ! parasympathetic ganglion
relationship: develops_from UBERON:0010128 {evidence="definitional"} ! future pterygopalatine ganglion
[Term]
id: UBERON:0003963
name: otic ganglion
def: "the ganglion that supplies nerve fibers to the parotid gland" [MP:0008315, Wikipedia:Otic_ganglion]
synonym: "arnold's ganglion" EXACT [FMA:6967]
synonym: "ganglion oticum" RELATED LATIN [Wikipedia:Otic_ganglion]
xref: EHDAA2:0001335
xref: EHDAA:6706
xref: FMA:6967
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Gray783.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray783.png/200px-Gray783.png
xref: SCTID:279283005
is_a: UBERON:0001808 ! parasympathetic ganglion
[Term]
id: UBERON:0003964
name: prevertebral ganglion
def: "the sympathetic ganglia located in front of the vertebral column and are associated with the major branches of the abdominal aorta; these include the celiac, aorticorenal, superior and inferior mesenteric ganglia" [MP:0008316]
synonym: "collateral ganglion" EXACT [FMA:5892]
synonym: "previsceral ganglion" EXACT [FMA:5892]
xref: FMA:5892
is_a: UBERON:0001806 ! sympathetic ganglion
[Term]
id: UBERON:0003965
name: sympathetic afferent fiber
def: "the fibers that conduct sensory nerve impulses from the viscera through the posterior dorsal roots into the spinal cord" [MP:0008319]
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000013 ! sympathetic nervous system
[Term]
id: UBERON:0003966
name: gonial bone
def: "investing bone that lies on the surface of the malleus." [MP:0008380]
comment: Editors note: To be revisted after a review of auditory ossicles
synonym: "gonium" EXACT [MP:0008380]
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003457 ! head bone
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001689 ! malleus
[Term]
id: UBERON:0003967
name: cutaneous elastic fiber
def: "the slender connective tissue fiber in the extracellular matrix of skin tissue that is composed of microfibrils and amorphous elastin and is characterized by great elasticity" [MP:0008418]
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0003968
name: peripheral lymph node
def: "the lymph nodes located outside the thoracic and abdominal cavities, such as the submandibular, prescapular, axillary, inguinal and popliteal lymph nodes" [MP:0008463]
is_a: UBERON:0000029 ! lymph node
[Term]
id: UBERON:0003970
name: placental labyrinth vasculature
def: "blood vessels of the layer of the placenta where embryonic and maternal blood vessels interdigitate" [MP:0008803]
synonym: "placenta vascular network" EXACT [OBOL:automatic]
synonym: "placenta vasculature" EXACT [OBOL:automatic]
synonym: "vascular network of placenta" EXACT [OBOL:automatic]
synonym: "vasculature of placenta" EXACT [OBOL:automatic]
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006876 ! vasculature of organ
relationship: part_of UBERON:0001987
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0001987 ! placenta
relationship: part_of UBERON:0001987 ! placenta
[Term]
id: UBERON:0003971
name: interfrontal bone
def: "a bone between the frontal bones in the skull; an extra bony plate within the anterior fontanelle that is not usually present" [MP:0008818]
is_a: UBERON:0003462 ! facial bone
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0003972
name: placenta junctional zone
def: "Fetally derived placental region that separates the maternal uterine tissue from the placenta labyrinth" [MP:0008957]
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001987 ! placenta
[Term]
id: UBERON:0003973
name: nasal concha of ethmoid bone
def: "One of the conchae of the ethmoid bone, which occupy the caudal part of the nasal fossae and form the lateral and superior portions of the turbinate bones in mammals[MP]. The ethmoturbinals are associated with the cribiform plate. They are covered with olfactory epithelium. Primarily, they serve to increase the surface area over which olfactory receptor neurons can come in contact with respiratory air. These olfactory receptor nerves then synapse with the mitral cells of the olfactory lobes through the cribiform plate in the manner described above[Palaeos]" [MP:0008971, palaeos.com/vertebrates/bones/braincase/ethmoid.html]
comment: Note that FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here
synonym: "ethmo-turbinate" EXACT []
synonym: "ethmoturbinal" EXACT [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html]
synonym: "ethmoturbinate" EXACT [MP:0008971]
synonym: "nasal turbinate of ethmoid bone" EXACT []
synonym: "turbinate of ethmoid bone" EXACT []
xref: FMA:57456
is_a: UBERON:0001762 ! nasal concha
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001679
intersection_of: UBERON:0001762 ! nasal concha
intersection_of: part_of UBERON:0001679 ! ethmoid bone
relationship: develops_from UBERON:0006332 {source="ISBN10:0073040584"} ! nasal capsule
relationship: part_of UBERON:0001679 ! ethmoid bone
[Term]
id: UBERON:0003974
name: cranial vagina
def: "the upper third of the vagina." [MP:0009077]
comment: Editor notes: relationship to caudal Mullerian duct?
synonym: "upper third of vagina" EXACT []
xref: SCTID:362247003
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0003975
name: internal female genitalia
def: "the internal feminine genital organs, including the ovaries, uterine tubes, uterus, uterine cervix, and vagina." [MP:0009209]
subset: organ_slim
synonym: "female internal genitalia" EXACT [FMA:45654]
synonym: "internal female genital organ" EXACT [BTO:0003099]
synonym: "internal genitalia of female reproductive system" EXACT [OBOL:automatic]
synonym: "organa genitalia feminina interna" RELATED [BTO:0003099]
xref: BTO:0003099
xref: FMA:45654
xref: SCTID:303518005
is_a: UBERON:0003134 ! female reproductive organ
is_a: UBERON:0004175 ! internal reproductive organ
relationship: part_of UBERON:0000474
intersection_of: UBERON:0004175 ! internal reproductive organ
intersection_of: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0003976
name: saccule duct
def: "the saccular portion of the utriculosaccular duct that normally extends from the sacculus to the endolymphatic duct" [MP:0009259]
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth
[Term]
id: UBERON:0003977
name: utricle duct
def: "the utricular portion of the utriculosaccular duct that normally extends from the utriculus to the endolymphatic duct" [MP:0009260]
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth
[Term]
id: UBERON:0003978
name: valve
subset: grouping_class
synonym: "anatomical valve" EXACT [FMA:67611]
xref: EHDAA2:0004046
xref: EHDAA:1892
xref: EHDAA:4406
xref: FMA:67611
xref: galen:Valve
xref: OpenCyc:Mx4rvqiwE5wpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003979
name: utricle valve
def: "the utriculo-endolymphatic (UE) valve which is located in the antero-inferior wall of the utricle at the orifice of the utricular duct and serves to regulate endolymph volume in the endolymphatic sac, the utricle and the canals" [MP:0009261]
is_a: UBERON:0003978 ! valve
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth
[Term]
id: UBERON:0003980
name: cerebellum fissure
def: "the deep furrows which divide the lobules of the cerebellum, including the postcentral, primary and secondary furrows" [MP:0009267]
comment: we use the FMA set-of term in absence of a singular term
synonym: "fissurae cerebelli" EXACT [FMA:77789, FMA:TA]
xref: FMA:77789
xref: SCTID:314163001
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0003981
name: primordial ovarian follicle
def: "primordial follicles are indiscernible to the naked eye and develop to primary, secondary, and finally mature vesicular follicles" [MP:0009361]
synonym: "ovary primordial follicle" EXACT [MA:0001710]
synonym: "primordial follicle" EXACT []
xref: EMAPA:30755
xref: MA:0001710
xref: ncithesaurus:Primordial_Follicle
is_a: UBERON:0001305 ! ovarian follicle
[Term]
id: UBERON:0003982
name: mature ovarian follicle
def: "." [MP:0009364]
subset: vertebrate_core
synonym: "antral follicle" RELATED [BTO:0000389]
synonym: "folliculi ovarici vesiculosi" RELATED [BTO:0000389]
synonym: "ovarian follicle stage IV" EXACT [ZFA:0001264]
synonym: "ovary mature follicle" EXACT [MA:0001709]
synonym: "preovulatory follicle" RELATED [BTO:0000389]
xref: BTO:0000389
xref: EFO:0003653
xref: MA:0001709
xref: TAO:0001264
xref: ZFA:0001264
property_value: UBPROP:0000001 "Stage IV (690-730 microns) are oocyte maturation. Selman et al, 1993.[TAO]" xsd:string
is_a: UBERON:0001305 ! ovarian follicle
relationship: develops_from UBERON:0003981 ! primordial ovarian follicle
[Term]
id: UBERON:0003983
name: conus arteriosus
def: "a conical pouch formed from the upper and left angle of the right ventricle in the chordate heart, from which the pulmonary artery arises[WP]. the anteriosuperior, smooth-walled portion of the cavity of the right ventricle, beginning at the supraventricular crest and terminates in the pulmonary trunk[MP]." [MP:0009464, Wikipedia:Conus_arteriosus]
comment: Terminology notes: we use the term CA for the anterior chamber if it is composed of cardiac muscle, contractile, and contains conal valves internally[Kardong] Taxon notes: Kardong says absent in adult tetrapods, check AAO
xref: AAO:0010250
xref: http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png
property_value: UBPROP:0000001 "Receives blood from the left atrium and becomes the median truncus arteriosus.[AAO]" xsd:string
is_a: UBERON:0004151 ! cardiac chamber
relationship: part_of UBERON:0002080 ! heart right ventricle
[Term]
id: UBERON:0003984
name: uterine tube infundibulum
def: "the funnel-like expansion of the abdominal extremity of the uterine tube" [MP:0009466, Wikipedia:Infundibulum_of_uterine_tube]
synonym: "infundibulum of fallopian tube" EXACT [FMA:18307]
synonym: "infundibulum of oviduct" EXACT [FMA:18307]
synonym: "infundibulum of uterine tube" EXACT [FMA:18307]
synonym: "infundibulum tubae uterinae" RELATED LATIN [Wikipedia:Infundibulum_of_uterine_tube]
xref: EMAPA:29897
xref: FMA:18307
xref: http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg
xref: SCTID:362262001
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0003889 ! fallopian tube
[Term]
id: UBERON:0003985
name: major sublingual duct
def: "the duct that drains the anterior portion of the sublingual gland and opens at the sublingual papilla" [MP:0009528]
synonym: "Bartholin's duct" RELATED INCONSISTENT [FMA:59986]
xref: BTO:0004558
xref: FMA:59986
xref: SCTID:25237008
is_a: UBERON:0003928 ! digestive system duct
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
disjoint_from: UBERON:0010150 ! duct of major vestibular gland
relationship: part_of UBERON:0001838 ! sublingual duct
[Term]
id: UBERON:0003986
name: minor sublingual duct
def: "the 8-20 small ducts that open into the mouth on the surface of the sublingual fold" [MP:0009529]
xref: FMA:59987
is_a: UBERON:0003928 ! digestive system duct
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001838 ! sublingual duct
[Term]
id: UBERON:0003987
name: Hassall's corpuscle
def: "the small spherical bodies of epithelial cells found in the medulla of the thymus, that are arranged in a concentric pattern around clusters of degenerating lymphocytes, eosinophils and macrophages" [MP:0009539]
xref: MA:0000772
xref: ncithesaurus:Hassall_s_Corpuscle
xref: SCTID:34223001
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
relationship: part_of UBERON:0002124 ! medulla of thymus
relationship: part_of UBERON:0003846 ! thymus epithelium
[Term]
id: UBERON:0003988
name: thymus corticomedullary boundary
def: "the dense region demarcating the thymus medulla from the surrounding cortex that is characterized by numerous blood vessels (predominantly arterioles) with some perivascular connective tissue, mature and immature T lymphocytes, dendritic cells, variable numbers of perivascular B-lymphocytes and plasma cells; site of entry of bone marrow stem cells and exit of mature, functional T cells" [MP:0009543]
is_a: UBERON:0000015 ! anatomical boundary
relationship: adjacent_to UBERON:0002123
relationship: adjacent_to UBERON:0002124
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0002123 ! cortex of thymus
intersection_of: adjacent_to UBERON:0002124 ! medulla of thymus
relationship: adjacent_to UBERON:0002123 ! cortex of thymus
relationship: adjacent_to UBERON:0002124 ! medulla of thymus
relationship: part_of UBERON:0002125 ! lobule of thymus
[Term]
id: UBERON:0003989
name: medulla oblongata anterior median fissure
def: "the longitudinal groove in the midline of the anterior aspect of the medulla oblongata" [MP:0009680]
synonym: "anterior median fissure" EXACT [FMA:83734]
synonym: "anterior median fissure of medulla" EXACT [FMA:83734]
synonym: "anterior median fissure of medulla oblongata" EXACT [FMA:83734]
synonym: "fissura mediana anterior medullae oblongatae" EXACT [FMA:83734, FMA:TA]
synonym: "ventral median fissure of medulla" EXACT [FMA:83734]
synonym: "ventral median sulcus" EXACT [FMA:83734]
xref: FMA:83734
xref: SCTID:279288001
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0003990
name: spinal cord motor column
def: "the subclasses of motor neurons which are organized into longitudinally oriented columns that occupy distinct and, in some cases, discontinuous domains along the rostrocaudal axis of the spinal cord; motor neurons within a single column send their axons to a common peripheral target" [MP:0009685]
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003991
name: fourth ventricle median aperture
def: "the large midline opening of the posterior inferior part of the roof of the fourth ventricle that connects the fourth ventricle to the posterior cerebromedullary cistern and the spinal cord" [MP:0009802, Wikipedia:Median_aperture]
synonym: "apertura mediana ventriculi quarti" RELATED LATIN [Wikipedia:Median_aperture]
synonym: "arachnoid forament" RELATED [MA:0002947]
synonym: "foramen of Magendie" EXACT [FMA:75015]
synonym: "foramen of Majendie" EXACT [FMA:75015]
synonym: "fourth ventricle median aperture" EXACT [MA:0002947]
synonym: "median aperture" BROAD [MP:0009802]
synonym: "median aperture of fourth ventricle" EXACT [FMA:75015]
xref: FMA:75015
xref: http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray708.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Gray708.svg/200px-Gray708.svg.png
xref: MA:0002947
xref: ncithesaurus:Foramen_of_Magendie
xref: SCTID:279449001
is_a: UBERON:0004668 ! fourth ventricle aperture
[Term]
id: UBERON:0003992
name: fourth ventricle lateral aperture
def: "The lateral aperture is a paired structure in human anatomy. It is an opening in each lateral extremity of the lateral recess of the fourth ventricle of the human brain. Along with the single median aperture, the two lateral aperatures provide a conduit for cerebrospinal fluid to flow from the brain's ventricular system into the subarachnoid space[WP]. the two lateral openings of the fourth ventricle into the subarachnoid space at the cerebellopontine angle[MP]." [MP:0009803, Wikipedia:Lateral_aperture]
synonym: "apertura lateralis" EXACT [FMA:78473, FMA:TA]
synonym: "apertura lateralis ventriculi quarti" RELATED LATIN [Wikipedia:Lateral_aperture]
synonym: "foramen of key and retzius" EXACT [FMA:78473]
synonym: "foramen of Key-Retzius" EXACT [FMA:78473]
synonym: "foramen of Luschka" EXACT [FMA:78473]
synonym: "foramen of Retzius" EXACT [FMA:78473]
synonym: "forament of Luschka" RELATED [MA:0002946]
synonym: "lateral aperture" BROAD [MP:0009803]
synonym: "lateral aperture of fourth ventricle" EXACT [FMA:78473]
xref: FMA:78473
xref: http://upload.wikimedia.org/wikipedia/commons/5/54/Lateral_ventricle.gif
xref: MA:0002946
xref: ncithesaurus:Foramen_of_Luschka
xref: SCTID:63426007
is_a: UBERON:0004668 ! fourth ventricle aperture
[Term]
id: UBERON:0003993
name: interventricular foramen
def: "the paired channels that connect the lateral and third ventricles and allows cerebrospinal fluid produced in the lateral ventricles to flow into the third ventricles" [MP:0009804]
xref: FMA:75351
xref: ncithesaurus:Interventricular_Foramen
xref: SCTID:279248006
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002286 ! third ventricle
[Term]
id: UBERON:0003994
name: pelvic ligament
def: "the dorsal sacroiliac, the sacrotuberal and/or the iliolumbar ligaments associated with the bony ring formed by the pair of hip bones fused at the symphysis and their firm articulation with the sacrum" [MP:0009807]
synonym: "pelvis ligament" EXACT [MA:0002948]
xref: MA:0002948
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003594 ! pelvis connective tissue
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003995
name: subarcuate fossa
def: "the irregular depression found on the posterior inner surface of the petrous portion of the temporal bone just below its crest and above and lateral to the internal acoustic meatus[MP]. In the temporal bone, above and between the aquæductus vestibuli is an irregular depression which lodges a process of the dura mater and transmits a small vein and the subarcuate artery[1] a branch of the internal auditory artery, which is an end artery that supplies blood to the inner ear ; in the infant this depression is represented by a large fossa, the subarcuate fossa, which extends backward as a blind tunnel under the superior semicircular canal. It is extensive in most primates (except for great apes) and nearly all mammals. In these animals, the subarcuate fossa houses a part of the cerebellum, the petrosal lobe[WP]." [MP:0009822]
xref: FMA:56418
is_a: UBERON:0004704 ! bone fossa
relationship: part_of UBERON:0001678 ! temporal bone
[Term]
id: UBERON:0003996
name: arcus anterior
alt_id: UBERON:0005209
def: "The anterior arch of the atlas forms about one-fifth of the ring of the atlas: its anterior surface is convex, and presents at its center the anterior tubercle for the attachment of the Longus colli muscles; posteriorly it is concave, and marked by a smooth, oval or circular facet (fovea dentis), for articulation with the odontoid process (dens) of the axis[WP]. The arch that connects the lateral masses of the atlas anteriorly and articulates with the anterior articular facet of the dens of the axis[MP]." [MP:0009879, Wikipedia:Anterior_arch_of_atlas]
synonym: "anterior arch of atlas" EXACT [MA:0002954]
synonym: "arcus anterior atlantis" EXACT [MA:0002954]
synonym: "arcus anterior atlantis" RELATED LATIN [Wikipedia:Anterior_arch_of_atlas]
synonym: "cervical vertebra 1 arcus anterior" EXACT [MA:0002954]
xref: FMA:23976
xref: http://upload.wikimedia.org/wikipedia/commons/9/9a/Arcusanterioratlantis.png
xref: MA:0002954
xref: SCTID:181891000
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001092 ! first cervical vertebra
[Term]
id: UBERON:0003997
name: hyoid bone greater horn
def: "the larger and more lateral of the paired processes on either side of the hyoid bone" [MP:0009913]
comment: In humans, the greater cornua are the larger, more lateral projections from the left and right borders of the body of hyoid bone. They are in contrast to the lesser cornua, which also occur in pairs but are comparatively smaller and conical in shape. The greater cornua are derived from the third pharyngeal arches. [http://www.biology-online.org/dictionary/Greater_cornua]
synonym: "cornu majus" EXACT [FMA:59496]
synonym: "cornu majus ossis hyoidei" EXACT [FMA:59496, FMA:TA]
synonym: "cornua majora" EXACT [http://www.biology-online.org/dictionary/Greater_cornua]
synonym: "epibranchial" RELATED [CHECKME:CHECKME]
synonym: "epibranchial of gill arch I" RELATED [CHECKME:CHECKME]
synonym: "epibranchial of pharyngeal arch III" RELATED [CHECKME:CHECKME]
synonym: "greater cornu" EXACT [FMA:59496]
synonym: "greater cornua" EXACT [http://www.biology-online.org/dictionary/Greater_cornua]
synonym: "greater cornua" RELATED [Wikipedia:Hyoid_bone]
synonym: "greater horn" EXACT [FMA:59496]
synonym: "greater horn of hyoid" EXACT [FMA:59496]
synonym: "greater horn of hyoid bone" EXACT [FMA:59496]
synonym: "greater horn of the hyoid" RELATED [Wikipedia:Hyoid_bone]
synonym: "hyoid bone greater cornu" RELATED [MA:0002959]
synonym: "hyoid bone long horn" RELATED []
synonym: "hyoid bone superior horn" RELATED [MA:0002959]
synonym: "hyoid bone upper horn" RELATED [MA:0002959]
synonym: "posterior horn of hyoid" RELATED []
synonym: "second horn of hyoid" RELATED [ISBN10:0073040584]
synonym: "tyrohal" EXACT [http://www.biology-online.org/dictionary/Greater_cornua]
synonym: "tyrohals" EXACT [http://www.biology-online.org/dictionary/Greater_cornua]
xref: EMAPA:18651
xref: EMAPA:18841
xref: FMA:59496
xref: MA:0002959
xref: SCTID:369008008
is_a: UBERON:0010273 {source="FMA"} ! zone of hyoid bone
relationship: develops_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3
[Term]
id: UBERON:0003998
name: hyoid bone lesser horn
def: "shorter and more medial of the paired processes on either side of the hyoid bone" [MP:0009914]
synonym: "anterior horn of hyoid" RELATED [ISBN10:0073040584]
synonym: "ceratohyal" RELATED SENSU [ISBN10:0073040584]
synonym: "cornu minus" EXACT [FMA:59499]
synonym: "cornu minus ossis hyoidei" EXACT [FMA:59499, FMA:TA]
synonym: "hyoid bone lesser cornu" RELATED [MA:0002960]
synonym: "hyoid bone lower horn" RELATED [MA:0002960]
synonym: "lesser cornu" EXACT [FMA:59499]
synonym: "lesser cornu of hyoid" EXACT []
synonym: "lesser cornua" EXACT [http://www.biology-online.org/dictionary/Lesser_cornua]
synonym: "lesser horn" EXACT [FMA:59499]
synonym: "lesser horn of hyoid" EXACT [FMA:59499]
synonym: "lesser horn of hyoid bone" EXACT [FMA:59499]
synonym: "lesser horn of the hyoid" EXACT []
xref: EMAPA:18652
xref: EMAPA:18842
xref: FMA:59499
xref: MA:0002960
xref: SCTID:369007003
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010273 {source="FMA"} ! zone of hyoid bone
relationship: develops_from UBERON:0004368 {source="MP-implied-by-def"} ! Reichert's cartilage
[Term]
id: UBERON:0003999
name: hyoid bone body
def: "the main curve of the hyoid bone, from which the horns extend" [MP:0009917, Wikipedia:Body_of_hyoid_bone]
synonym: "base of hyoid bone" RELATED [MA:0002958]
synonym: "basihyal bone" RELATED [MA:0002958]
synonym: "basihyoid bone" RELATED [MA:0002958]
synonym: "body of hyoid" RELATED [ISBN10:0073040584]
synonym: "body of hyoid bone" RELATED [MA:0002958]
synonym: "corpus ossis hyoidei" RELATED LATIN [Wikipedia:Body_of_hyoid_bone]
synonym: "hyoid bone base" RELATED [MA:0002958]
xref: EMAPA:18653
xref: EMAPA:18843
xref: FMA:59495
xref: http://upload.wikimedia.org/wikipedia/commons/1/1f/Gray186.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Gray186.png/200px-Gray186.png
xref: MA:0002958
xref: SCTID:369006007
is_a: UBERON:0010273 {source="cjm"} ! zone of hyoid bone
[Term]
id: UBERON:0004000
name: tarsal gland acinus
def: "." [MP:0009935]
synonym: "acinus of tarsal gland" EXACT []
synonym: "meibomian gland acinus" EXACT []
synonym: "palpebral gland acinus" RELATED []
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0009842 ! acinus
relationship: part_of UBERON:0001818
intersection_of: UBERON:0009842 ! acinus
intersection_of: part_of UBERON:0001818 ! tarsal gland
relationship: part_of UBERON:0001818 ! tarsal gland
[Term]
id: UBERON:0004001
name: olfactory bulb layer
def: "." [MP:0009946]
comment: TODO - check isa parentage
synonym: "cytoarchitectural part of olfactory bulb" EXACT [NIF_GrossAnatomy:nlx_anat_20090402]
xref: NIF_GrossAnatomy:nlx_anat_20090402
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002264 ! olfactory bulb
[Term]
id: UBERON:0004002
name: cerebellum posterior lobe
def: "the region of the cerebellum that is posterior to the primary fissure and anterior to the posteriolateral fissure" [MP:0009962]
synonym: "cerebrocerebellum" EXACT [FMA:72252]
synonym: "middle lobe-1 of cerebellum" EXACT [FMA:72252]
synonym: "posterior cerebellar lobe" EXACT [FMA:72252]
synonym: "posterior lobe of cerebellum" EXACT []
synonym: "posterior lobe of the cerebellum" EXACT [NIF_GrossAnatomy:birnlex_911]
synonym: "posterior lobe-1 of cerebellum" EXACT [FMA:72252]
xref: FMA:72252
xref: MA:0002964
xref: NIF_GrossAnatomy:birnlex_911
xref: SCTID:279360009
is_a: UBERON:0005293 ! cerebellum lobe
[Term]
id: UBERON:0004003
name: cerebellum hemisphere lobule
def: "the region of a cerebellar lobule that resides in either of the lateral sections of the cerebellum outside the vermis; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres" [MP:0009963]
comment: TODO - define as a region overlapping
synonym: "cerebellar hemisphere lobule" EXACT []
synonym: "lobule of cerebellar hemisphere" EXACT [FMA:83880]
synonym: "lobule of hemisphere of cerebellum" EXACT [FMA:83880]
xref: FMA:83880
xref: MA:0002967
is_a: UBERON:0004004 ! cerebellum lobule
relationship: part_of UBERON:0002245
intersection_of: UBERON:0004004 ! cerebellum lobule
intersection_of: part_of UBERON:0002245 ! hemisphere of cerebellum
relationship: part_of UBERON:0002245 ! hemisphere of cerebellum
[Term]
id: UBERON:0004004
name: cerebellum lobule
def: "one of the the ten gyri of the cerebellar cortex" [MP:0009964]
synonym: "lobular parts of the cerebellar cortex" EXACT [NIF_GrossAnatomy:birnlex_1084]
xref: MA:0002966
xref: NIF_GrossAnatomy:birnlex_1084
is_a: UBERON:0002749 ! regional part of cerebellar cortex
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0004005
name: cerebellum lateral hemisphere
def: "the most lateral paired regions of the cerebellum; the lateral zone receives input from the parietal cortex via pontocerebellar mossy fibers regarding the location and position of the body and integrates input signals with indications of muscle activity" [MP:0009965]
is_a: UBERON:0002749 ! regional part of cerebellar cortex
relationship: part_of UBERON:0002245 ! hemisphere of cerebellum
[Term]
id: UBERON:0004006
name: cerebellum intermediate hemisphere
def: "the paired regions of the cerebellar hemisphere that lie adjacent to the vermis and are between the vermis and lateral regions of the hemispheres; it receives input from the corticopontocerebellar fibers that originate from the motor cortex, and also receives sensory feedback from the muscles; these signals are integrated by this region, to coordinate muscle activity with motor inputs" [MP:0009966]
is_a: UBERON:0002749 ! regional part of cerebellar cortex
relationship: part_of UBERON:0002245 ! hemisphere of cerebellum
[Term]
id: UBERON:0004008
name: cerebellar plate
def: "the embryonic pseudostratified epithelium of the fourth cerebellar ventricle that eventually forms the vermis and ventral neuroepithelium" [MP:0000856]
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004009
name: cerebellum posterior vermis
def: "the posterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located posterior to the primary fissure" [MP:0000869]
synonym: "posterior cerebellum vermis" EXACT []
synonym: "vermis of posterior lobe" EXACT [FMA:72259]
synonym: "vermis of posterior lobe of cerebellum" EXACT []
synonym: "vermis of the posterior lobe of the cerebellum" EXACT [NIF_GrossAnatomy:nlx_anat_20081240]
xref: FMA:72259
xref: MA:0002970
xref: NIF_GrossAnatomy:nlx_anat_20081240
is_a: UBERON:0004720 ! cerebellar vermis
relationship: part_of UBERON:0004002 ! cerebellum posterior lobe
[Term]
id: UBERON:0004010
name: primary muscle spindle
def: "the sensory organ in muscle; involved in the stretch reflex and sensitive to stretch velocity" [MP:0000991]
is_a: UBERON:0003718 ! muscle spindle
[Term]
id: UBERON:0004011
name: secondary muscle spindle
def: "the sensory organ in muscle; involved in the stretch reflex and not sensitive to stretch velocity" [MP:0000994]
is_a: UBERON:0003718 ! muscle spindle
[Term]
id: UBERON:0004012
name: golgi tendon organ
def: "the sensory organ in muscle that is involved in regulating muscle tension" [MP:0000999]
synonym: "neurotendinous ending" EXACT [FMA:83608]
synonym: "neurotendinous organ of golgi" EXACT [FMA:83608]
xref: FMA:83608
xref: ncithesaurus:Golgi_Tendon_Organ
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0004013
name: egg cylinder
def: "the transient cup-like structure of the epiblast that consists of a single layer of embryonic cells" [MP:0003085]
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0002532 ! epiblast
[Term]
id: UBERON:0004014
name: labium minora
def: "The labia minora or nymphae are two longitudinal cutaneous folds on the human vulva. They are situated between the labia majora, and extend from the clitoris obliquely downward, laterally, and backward on either side of the vulval vestibule, ending between bottom of the vulval vestibule and the labia majora. In the virgin the posterior ends of the labia minora are usually joined across the middle line by a fold of skin, named the frenulum labiorum pudendi or fourchette. Labia minora may vary widely in size from woman to woman. On the front, each labium minus (nympha) divides into two portions: the upper division passes above the clitoris to meet the labium minus of the opposite side—which may not be equal in size—forming a fold which overhangs the glans clitoridis; this fold is named the preputium clitoridis. The lower division passes beneath the glans clitoridis and becomes united to its under surface, forming, with the labium minus of the opposite side—which also may not be equal in size—the frenulum clitoridis. On the opposed surfaces of the labia minora are numerous sebaceous follicles. [WP,unvetted]." [Wikipedia:Labia_minora]
synonym: "labia minorum" EXACT []
synonym: "labium minora" EXACT []
synonym: "labium minus" EXACT [FMA:20374]
synonym: "labium minus pudendi" RELATED LATIN [Wikipedia:Labia_minora]
xref: FMA:20374
xref: galen:LabiaMinora
xref: http://upload.wikimedia.org/wikipedia/commons/b/b7/Vulva_labeled_english.jpg
xref: MA:0002845
xref: ncithesaurus:Labium_Minus
xref: SCTID:362240001
is_a: UBERON:0004084 ! labium
relationship: develops_from UBERON:0004876 {source="Wikipedia"} ! urogenital ridge
[Term]
id: UBERON:0004015
name: embryonic-extraembryonic boundary
def: "the normal development /maintenance of the connection between the embryo proper and extraembryonic tissues" [MP:0003890]
is_a: UBERON:0000015 ! anatomical boundary
relationship: adjacent_to UBERON:0000478
relationship: adjacent_to UBERON:0002050
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0000478 ! extraembryonic structure
intersection_of: adjacent_to UBERON:0002050 ! embryonic structure
relationship: adjacent_to UBERON:0000478 ! extraembryonic structure
relationship: adjacent_to UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0004016
name: dermatome
def: "the mesoderm that is derived from the somite that is fated to become the dermis[MP]" [MP:0003940, Wikipedia:Dermatomal_mesenchyme]
comment: Not to be confused with 'dermatome segment of skin'.
synonym: "cutis plate" EXACT [Wikipedia:Cutis_plate]
synonym: "dermatomal mesenchyme" EXACT [Wikipedia:Cutis_plate]
synonym: "mesenchyma dermatomiale" RELATED LATIN [Wikipedia:Dermatomal_mesenchyme]
xref: AAO:0011028
xref: EHDAA2:0003428
xref: EHDAA:1719
xref: EHDAA:1725
xref: EHDAA:1731
xref: EHDAA:1737
xref: http://upload.wikimedia.org/wikipedia/commons/f/f3/Gray64.png
xref: ncithesaurus:Dermatome
xref: XAO:0000220
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
disjoint_from: UBERON:0007121 ! dermatome segment of skin
relationship: develops_from UBERON:0004290 {source="EHDAA2"} ! dermomyotome
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0004017
name: periocular mesenchyme
def: "the mesenchymal cells that give rise to the corneal endothelium, corneal stroma, sclera, iris stroma, ciliary muscle, ciliary stroma, and trabecular meshwork of the eye[MP]." [MP:0004054, PMID:3709965]
comment: AO notes: Check XAO once it has a definition. Taxon notes: Periocular mesenchyme (PM) is a mesencephalic neural crest derived cell population which as a result of an interaction with the retinal pigment epithelium forms the scleral cartilage of the avian eye[PMID:3709965]
synonym: "periocular mesenchyme" RELATED [XAO:0004089]
xref: XAO:0004089
xref: ZFA:0005572
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0010312 ! immature eye
[Term]
id: UBERON:0004019
name: baroreceptor
def: "the sensory nerve endings in the wall of the atria of the heart, vena cava, aortic arch and carotid sinus that are sensitive to changes in blood pressure" [MP:0004118]
xref: FMA:85601
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0004020
name: embryonic cilium
def: "OBSOLETE: the earliest cilia of the mouse embryo found on the cells of the embryonic node" [MP:0004131]
comment: Made obsolete as cell components are out of scope
is_obsolete: true
[Term]
id: UBERON:0004021
name: spongiotrophoblast layer
def: "the structure of the outer structural layer of the rodent placenta[MP]. Forms a compact layer of non-syncytial cells between the labyrinth and the outer giant cells" [MP:0004255, PMID:19829370]
comment: Taxon notes: restriction to Rodentia may be too strong - we apply it for now as we are inheriting the MP definition. Development notes: In the absence of direct lineage analysis, it has been assumed, from his- tological studies and from the continuity of marker gene expression, that the spongiotrophoblast largely derives from the cells of the ectoplacental cone[PMID:19829370]
synonym: "spongiotrophoblast layer of placenta" EXACT []
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001987 ! placenta
[Term]
id: UBERON:0004022
name: embryonic neuroepithelium
def: "the epithelial cell layer that lines the neural tube and develops into the nervous system and into the neural crest cells" [MP:0004261]
synonym: "neurepithelium" BROAD [BTO:0000314]
xref: BTO:0000314
xref: EHDAA2:0004654
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010371 ! ecto-epithelium
disjoint_from: UBERON:0006934 ! sensory epithelium
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0004023
name: ganglionic eminence
def: "the transient proliferative population of neurons that expands exponentially during late prenatal development; it is a continuous germinal zone distinct from the ventricular zone that surrounds the brain ventricles[MP]. The eminences are found in the ventral part of the telencephalon, where they form bulges in the ventricles. These bulges develop into the basal ganglia.[1] They also contribute significantly in building up the GABAergic cortical cell population[WP]." [MP:0004274, Wikipedia:Ganglionic_eminence]
synonym: "embryonic subventricular zone" EXACT []
synonym: "embryonic/fetal subventricular zone" EXACT []
synonym: "fetal subventricular zone" EXACT []
synonym: "GE" BROAD []
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0004024
name: medial ganglionic eminence
def: "a distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the neocortex; however, hippocampal neurons, thalamus, septum and olfactory bulb neurons are also partly derived from the MGE." [MP:0004276]
synonym: "MGE" BROAD []
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0004023 ! ganglionic eminence
[Term]
id: UBERON:0004025
name: lateral ganglionic eminence
def: "a distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the striatum; however, neocortex, thalamus, septum and olfactory bulb neurons are also partly derived from the LGE" [MP:0004277]
synonym: "LGE" BROAD []
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0004023 ! ganglionic eminence
[Term]
id: UBERON:0004026
name: caudal ganglionic eminence
def: "the caudally located, distinct elevation of a transient proliferating cell mass of the fetal subventricular zone, located adjacent to the lateral ventricle" [MP:0004278]
synonym: "CGE" BROAD []
xref: EFO:0001911
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0004023 ! ganglionic eminence
[Term]
id: UBERON:0004027
name: chorionic plate
def: "the portion of the chorion from which chorionic villi develop that establish a connection with the endometrium, giving rise to the fetal portion of the mature placenta" [MP:0004560]
xref: BTO:0002879
xref: ncithesaurus:Chorionic_Plate
xref: SCTID:256391000
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0004029
name: canal of Schlemm
def: "the vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation" [MP:0005204]
synonym: "Schlemm's canal" EXACT []
synonym: "scleral sinus" EXACT [FMA:51873]
synonym: "scleral venous sinus" EXACT [FMA:51873]
synonym: "sinus venosus of sclera" EXACT [FMA:51873]
xref: FMA:51873
xref: ncithesaurus:Canal_of_Schlemm
xref: SCTID:280605006
is_a: UBERON:0001653 ! facial vein
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0003956 ! aqueous drainage system
relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus
relationship: tributary_of UBERON:0005486 {source="FMA/obol"} ! venous dural sinus
[Term]
id: UBERON:0004030
name: aqueous vein
def: "this vessel that receives aqueous humor from the sinus venosus sclerae (canal of Schlemm)" [MP:0005207]
is_a: UBERON:0001653 ! facial vein
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0003956 ! aqueous drainage system
[Term]
id: UBERON:0004031
name: ectomesenchyme
def: "mesenchymal cells derived from neural crest cells that contribute to development of the hard and soft tissue in the head and neck, including the branchial arches." [MP:0006302]
is_a: UBERON:0005253 ! head mesenchyme
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0002342 ! neural crest
[Term]
id: UBERON:0004032
name: podocyte slit diaphragm
def: "the thin membrane that covers the podocyte filtration slit which allows small molecules such as water, glucose, and ionic salts to pass through while retaining larger macromolecules in the bloodstream" [MP:0008060]
comment: TODO - submit to GO
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0004033
name: podocyte slit junction
def: "the gaps between the interdigitated foot processes of the podocyte" [MP:0008062]
comment: TODO - submit to GO
is_a: UBERON:0000061 ! anatomical structure
relationship: adjacent_to UBERON:0004355 ! podocyte foot process
[Term]
id: UBERON:0004034
name: cutaneous microfibril
def: "the fiber-like strand of fibrillin that forms the scaffold of the cutaneous elastic fibers found in the extracellular matrix of the skin" [MP:0008419]
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0003967 ! cutaneous elastic fiber
[Term]
id: UBERON:0004035
name: subplate
def: "the transient outer neural tube region that contains the first generated post-mitotic neurons that receive synaptic input from thalamic axons and in turn project axons to the developing cortical plate" [MP:0008440, Wikipedia:Subplate]
comment: The transient fetal subplate zone, together with the marginal zone and the cortical plate, represents the developmental anlage of the mammalian cerebral cortex. It serves as a waiting compartment for growing cortical afferents; its cells are involved in the establishment of pioneering cortical efferent projections and transient fetal circuitry, and apparently have a number of other developmental roles. The subplate zone is a phylogenetically recent structure and it is most developed in the human brain. Subplate neurons are among the first generated neurons in the mammalian cerebral cortex [1]. These neurons disappear during postnatal development and are important in establishing the correct wiring [2][3] and functional maturation [4] of the cerebral cortex. Subplate neurons appear to be selectively sensitive to injury (such as hypoxia) which in humans are associated with motor and cognitive defects[WP].
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0004036
name: retinal cone cell inner segment
def: "the retinal cone cell region which contains the machinery of the cell (mitochondria, golgi, endoplasmic reticulum, etc) and where opsin molecules are assembled and passed to be part of the outer segment region" [MP:0008448]
comment: request from GO as subclass of photoreceptor segment
is_obsolete: true
[Term]
id: UBERON:0004037
name: retinal cone cell outer segment
def: "the retinal cone cell region in which the visual pigment rhodopsin is in invaginations of the cell membrane" [MP:0008449]
comment: request from GO as subclass of photoreceptor segment
is_obsolete: true
[Term]
id: UBERON:0004038
name: retinal rod cell inner segment
def: "the retinal rod cell region which contains the machinery of the cell (mitochondria, golgi, endoplasmic reticulum, etc) and where opsin molecules are assembled and passed to be part of the outer segment region" [MP:0008455]
comment: request from GO as subclass of photoreceptor segment
is_obsolete: true
[Term]
id: UBERON:0004039
name: retinal rod cell outer segment
def: "the retinal rod cell region which contains stacks of membranous discs separate from the outer cell membrane that are rich in the visual pigment rhodopsin" [MP:0008456]
comment: request from GO as subclass of photoreceptor segment
is_obsolete: true
[Term]
id: UBERON:0004040
name: cortical intermediate zone
def: "the region of the developing mammalian cortex that extends between the ventricular zone and the cortical plate (CP); normally, the IZ is a region of tangential migration of cells, and at midgestation, the lower part of the IZ develops into the subventricular zone" [MP:0008457]
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0004041
name: spleen primary B follicle
def: "the nodules of small undifferentiated B lymphocytes and follicular dendritic cells located in the spleen white pulp" [MP:0008471]
comment: AO notes - FMA:15843 is classified as primary follicle so it belongs here
synonym: "primary spleen B cell follicle" EXACT [CL:tm]
xref: FMA:15843
is_a: UBERON:0001249 ! spleen lymphoid follicle
is_a: UBERON:0010422 ! primary nodular lymphoid tissue
relationship: part_of UBERON:0002106
intersection_of: UBERON:0010422 ! primary nodular lymphoid tissue
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0004042
name: spleen secondary B follicle
def: "the nodules of antigen-activated, differentiating B cells, follicular dendritic cells, antigen-presenting T cells and macrophages in the spleen white pulp" [MP:0008472]
synonym: "secondary spleen B cell follicle" EXACT [CL:tm]
synonym: "splenic secondary B cell follicle" EXACT [MP:0008472]
is_a: UBERON:0001249 ! spleen lymphoid follicle
is_a: UBERON:0001745 ! secondary nodular lymphoid tissue
relationship: part_of UBERON:0002106
intersection_of: UBERON:0001745 ! secondary nodular lymphoid tissue
intersection_of: part_of UBERON:0002106 ! spleen
relationship: develops_from UBERON:0004041 {source="CL:tm"} ! spleen primary B follicle
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0004043
name: semicircular canal ampulla
def: "the spherical enlargement at the base of each semicircular canal where they connect with the utricle, containing the crista ampullaris which detects movement of the fluid within the canals" [MP:0008488, Wikipedia:Osseous_ampullae]
comment: TODO check duct vs canal. Also check FMA - has many subtypes of semicircular canal such as 'ampulla of anterior semicircular canal'
synonym: "ampullae osseae" RELATED LATIN [Wikipedia:Osseous_ampullae]
synonym: "membraneous ampulla of the semicircular duct" RELATED [MP:0008488]
synonym: "semicircular duct ampulla" RELATED [MA:0002770]
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg/200px-Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg
xref: MA:0002770
xref: SCTID:279759001
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001856 {source="MA"} ! semicircular duct
[Term]
id: UBERON:0004044
name: anterior visceral endoderm
def: "the extraembryonic tissue that is responsible for the proper orientation of the anterior-posterior axis of the embryo and for appropriate patterning of adjacent embryonic tissue" [MP:0008533]
comment: see also primitive streak
synonym: "AVE" RELATED [BTO:0003361]
xref: BTO:0003361
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000925 ! endoderm
[Term]
id: UBERON:0004045
name: tailgut
def: "the extension of the hindgut of the primitive digestive tube of the embryo, caudal to the location of the anal opening" [MP:0008787]
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0004046
name: anterior definitive endoderm
def: "the mesendoderm which first migrates from the node and which gives rise to the gut" [MP:0008926]
comment: TODO - check
is_a: UBERON:0000089 ! hypoblast
[Term]
id: UBERON:0004047
name: basal cistern
def: "the enclosed space where the arachnoid membrane stretches between the two temporal lobes and encloses the cerebral peduncles including the structures contained in the interpeduncular fossa" [MP:0009029]
xref: EMAPA:19056
xref: EMAPA:19149
is_a: UBERON:0004050 ! subarachnoid cistern
[Term]
id: UBERON:0004048
name: pontine cistern
def: "the space located on lateral aspects of the pons at the junction with the celebellum" [MP:0009030]
xref: EMAPA:18212
xref: FMA:83719
is_a: UBERON:0004050 ! subarachnoid cistern
is_a: UBERON:0005219 ! hindbrain subarachnoid space
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0004049
name: cerebellomedullary cistern
def: "the largest of the subarachnoid cisterns between the cerebellum and the medulla oblongata; it is divided into a posterior cerebellomedullary cistern [TA] located between the cerebellum and the posterior surface of the medulla (also called cisterna magna), and a lateral cerebellomedullary cistern [TA] located between the cerebellum and the lateral aspect of the medulla." [http://www.drugs.com/dict/cerebellomedullary-cistern.html]
synonym: "great cistern" EXACT [FMA:74517]
xref: FMA:74517
is_a: UBERON:0004050 ! subarachnoid cistern
[Term]
id: UBERON:0004050
name: subarachnoid cistern
def: "the widening portions of the subarachnoid space within the cranium where the arachnoid bridges over a depression on the surface of the brain" [MP:0009032, Wikipedia:Cistern_(neuroanatomy)]
comment: AO notes: in FMA is a subdivision of arachnoid space
synonym: "cistern" BROAD [Wikipedia:Cistern_(neuroanatomy)]
synonym: "cisterna" BROAD LATIN [Wikipedia:Cistern_(neuroanatomy)]
xref: FMA:83717
xref: ncithesaurus:Subarachnoid_Cistern
xref: SCTID:314223007
is_a: UBERON:0000315 ! subarachnoid space
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0004051
name: lateral cerebellomedullary cistern
def: "the space between the cerebellum and the lateral aspect of the medulla" [MP:0009034]
synonym: "cisterna cerebellomedullaris lateralis" EXACT [MP:0009034]
xref: FMA:83722
is_a: UBERON:0004049 ! cerebellomedullary cistern
relationship: adjacent_to UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004052
name: quadrigeminal cistern
def: "the enclosed space extending forward between the corpus callosum and the thalamus that contains the internal cerebral veins" [MP:0009035]
synonym: "ambient cistern" EXACT [FMA:74511]
synonym: "cistern of great cerebral vein" EXACT [FMA:74511]
synonym: "cisterna ambiens" EXACT [FMA:74511, FMA:TA]
synonym: "cisterna quadrigeminalis" EXACT [FMA:74511, FMA:TA]
synonym: "cisterna venae magnae cerebri" EXACT [FMA:74511, FMA:TA]
synonym: "superior cistern" EXACT [FMA:74511]
xref: FMA:74511
xref: ncithesaurus:Quadrigeminal_Cistern
xref: SCTID:56154003
is_a: UBERON:0004050 ! subarachnoid cistern
relationship: adjacent_to UBERON:0002336 ! corpus callosum
[Term]
id: UBERON:0004053
name: external male genitalia
def: "the external masculine genital organs, including the penis and scrotum" [MP:0009199]
subset: organ_slim
synonym: "external male genital organ" EXACT [BTO:0003097]
synonym: "male external genitalia" EXACT [FMA:45642]
synonym: "organa genitalia masculina externa" RELATED [BTO:0003097]
xref: BTO:0003097
xref: EMAPA:30977
xref: FMA:45642
xref: galen:MaleExternalGenitalia
xref: SCTID:362264000
is_a: UBERON:0003135 ! male reproductive organ
is_a: UBERON:0004176 ! external reproductive organ
relationship: part_of UBERON:0000079
intersection_of: UBERON:0004176 ! external reproductive organ
intersection_of: part_of UBERON:0000079 ! male reproductive system
disjoint_from: UBERON:0005056 ! external female genitalia
disjoint_from: UBERON:0009196 ! indifferent external genitalia
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0004054
name: internal male genitalia
def: "the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205]
comment: Editor note: consider splitting genitalia from genital organ
subset: organ_slim
synonym: "internal male genital organ" EXACT [BTO:0003096]
synonym: "male internal genitalia" EXACT [FMA:45655]
synonym: "organa genitalia masculina interna" RELATED [BTO:0003096]
xref: BTO:0003096
xref: FMA:45655
xref: SCTID:310536002
is_a: UBERON:0003135 ! male reproductive organ
is_a: UBERON:0004175 ! internal reproductive organ
relationship: part_of UBERON:0000079
intersection_of: UBERON:0004175 ! internal reproductive organ
intersection_of: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0004055
name: primitive pit
def: "the small depression in the primitive streak that is caudal to the primitive node where the cells of the epiblast initially begin to invaginate during early embryogenesis" [MP:0009329]
comment: TODO - check
xref: EHDAA2:0001521
xref: EHDAA:551
xref: ncithesaurus:Primitive_Pit
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0004341 ! primitive streak
[Term]
id: UBERON:0004056
name: primitive groove
def: "the shallow valley that extends along the length of the primitive streak" [MP:0009330]
comment: TODO - check
xref: EHDAA2:0001511
xref: EHDAA:547
xref: ncithesaurus:Primitive_Groove
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0004341 ! primitive streak
[Term]
id: UBERON:0004057
name: skeletal muscle fiber triad
def: "the skeletal muscle fiber structure comprised of the transverse tubule and the two associated terminal cisternae; each fiber normally has thousands of triads" [MP:0009411]
is_a: UBERON:0001134 ! skeletal muscle tissue
[Term]
id: UBERON:0004058
name: biliary ductule
def: "One of the fine terminal elements of the bile duct system, leaving the portal canal, and pursuing a course at the periphery of a lobule of the liver[BTO]. the excretory ducts of the liver that connect the interlobular ductules to the right or left hepatic duct[MP]" [BTO:0002840, MP:0009494]
comment: ZFIN: Digestive system duct that collects bile from the canaliculus and transports bile through the liver -- (check if the same) // The smallest and the most peripheral branches of the biliary tree consist of a portal part (portal ductule) and an intralobular part (intralobular ductule) //
synonym: "bile capillary" RELATED [BTO:0002840]
synonym: "bile ductule" EXACT [BTO:0002840]
synonym: "biliary ductule" RELATED [BTO:0002840]
synonym: "cholangiole" RELATED [BTO:0002840]
xref: BTO:0002840
xref: TAO:0005164
xref: ZFA:0005164
is_a: UBERON:0003928 ! digestive system duct
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: adjacent_to UBERON:0001175 ! common hepatic duct
relationship: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0002394 {source="BTO"} ! bile duct
[Term]
id: UBERON:0004059
name: spinal cord medial motor column
def: "the subclasses of motor neurons which project their axons to axial muscles that lie close to the vertebral column; motor neurons in the lateral subdivision of the MMC project their axons to body wall muscles" [MP:0009686]
is_a: UBERON:0003990 ! spinal cord motor column
[Term]
id: UBERON:0004060
name: neural tube ventricular layer
def: "the layer of undifferentiated, proliferating cells that line the neural tube lumen" [MP:0009689]
synonym: "neural tube ependymal zone" EXACT [MP:0009689]
synonym: "neural tube ventricular zone" RELATED [MP:0009689]
xref: EMAPA:16783
xref: EMAPA:17152
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: adjacent_to UBERON:0003842 ! neural tube lumen
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0004061
name: neural tube mantle layer
def: "the layer of glia and differentiating neurons that will form the gray matter of the spinal cord; this lies between the ventricular and marginal layers and includes the basal and alar plates" [MP:0009690]
synonym: "neural tube intermediate zone" EXACT [MP:0009690]
xref: EMAPA:17148
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: adjacent_to UBERON:0004060 ! neural tube ventricular layer
relationship: adjacent_to UBERON:0004062 ! neural tube marginal layer
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0004062
name: neural tube marginal layer
def: "the outermost layer of the neural tube that contains nerve fibers and will form the white matter" [MP:0009691]
synonym: "neural tube marginal zone" EXACT [MP:0009691]
xref: EMAPA:17151
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0004063
name: spinal cord alar plate
def: "the region of the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses; the alar plate develops into the dorsal horn in the grey matter of the spinal cord" [MP:0009692]
comment: TODO - merge with UBERON:0003054 roof plate?
synonym: "spinal cord alar column" EXACT [MP:0009692]
synonym: "spinal cord alar lamina" EXACT [MP:0009692]
xref: EMAPA:17149
xref: EMAPA:17581
xref: VHOG:0000899
is_a: UBERON:0005882 ! alar plate
relationship: part_of UBERON:0006241 ! future spinal cord
[Term]
id: UBERON:0004064
name: basal plate
def: "the region of the mantle layer of the neural tube that lies ventral to the sulcus limitans and contains primarily motor neurons and interneurons. the region of the neural tube ventral to the sulcus limitans. It extends from the rostral mesencephalon to the end of the spinal cord and contains primarily motor neurons, whereas neurons found in the alar plate are primarily associated with sensory functions. The cell types of the basal plate include lower motor neurons and four types of interneuron. Initially the left and right sides of the basal plate are continuous, but during neurulation they become separated by the floor plate, a derivative of the notochord[WP]." [MP:0009693, Wikipedia:Basal_plate_(neural_tube)]
synonym: "basal plate of neural tube" EXACT [Wikipedia:Basal_plate_(neural_tube)]
synonym: "spinal cord basal plate" EXACT [MP:0009693]
xref: AAO:0010561
xref: EFO:0001904
xref: ncithesaurus:Basal_Plate
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0004061 ! neural tube mantle layer
relationship: ventral_to UBERON:0005478 ! sulcus limitans of neural tube
[Term]
id: UBERON:0004065
name: primordial meninx
def: "the outermost mesenchymal covering of the developing brain and spinal cord that is composed of tough fibrous connective tissue from which the arachnoid mater, pia mater and dura mater are formed" [MP:0009726]
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0004066
name: frontonasal prominence
alt_id: UBERON:0006237
def: "During embryonic development, two areas of thickened ectoderm, the olfactory areas, appear immediately under the fore-brain in the anterior wall of the stomodeum, one on either side of a region termed the frontonasal prominence (or process)[WP]. By the upgrowth of the surrounding parts these areas are converted into pits, the olfactory pits, which indent the frontonasal prominence and divide it into a medial and two lateral nasal processes[WP]. two areas of thickened ectoderm, the olfactory areas, appear immediately under the fore-brain in the anterior wall of the stomodeum, one on either side of a region termed the frontonasal prominence. an unpaired facial process in the embryo formed from the tissues surrounding the forebrain vesicle that develops into the forehead and bridge of the nose/snout[MP]." [MP:0009901, Wikipedia:Frontonasal_prominence]
comment: TODO - improve def
synonym: "prominentia frontonasalis" RELATED LATIN [Wikipedia:Frontonasal_prominence]
xref: EHDAA2:0000581
xref: EHDAA:4778
xref: EMAPA:16681
xref: http://upload.wikimedia.org/wikipedia/commons/9/98/Gray44.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/98/Gray44.png/200px-Gray44.png
xref: ncithesaurus:Frontonasal_Prominence
xref: SCTID:361486000
xref: VHOG:0001319
is_a: UBERON:0009292 ! embryonic nasal process
[Term]
id: UBERON:0004067
name: lateral nasal prominence
def: "the lateral area of the two branches of a horseshoe-shaped mesenchymal swelling in the future nasal region of the embryo; it separates the olfactory pit from the developing eye and the ala of the nose/snout develops from it" [MP:0009902, Wikipedia:Lateral_nasal_prominence]
synonym: "lateral nasal process" EXACT [EHDAA2:0000916]
synonym: "lateral nasal swelling" RELATED [UBERON:cjm]
synonym: "latero-nasal process" EXACT [EMAPA:16805]
synonym: "prominentia nasalis lateralis" RELATED LATIN [Wikipedia:Lateral_nasal_prominence]
xref: EHDAA2:0000916
xref: EHDAA:4786
xref: EMAPA:16805
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray48.png/200px-Gray48.png
xref: SCTID:308880000
is_a: UBERON:0009292 ! embryonic nasal process
relationship: develops_from UBERON:0004066 {source="Wikipedia"} ! frontonasal prominence
relationship: part_of UBERON:0004066 {source="EHDAA2"} ! frontonasal prominence
[Term]
id: UBERON:0004068
name: medial nasal prominence
def: "the central area of the two limbs of a horseshoe-shaped mesenchymal swelling that lie medial to the olfactory placode or pit in the future nasal region of the embryo; it joins with the ipsilateral maxillary prominence in the formation of half of the upper jaw, and the nasal tip and philtrum of the upper lip develop from it" [MP:0009903, Wikipedia:Medial_nasal_prominence]
comment: Fusion of right and left medial nasal processes forms a primary palate rostrally and the nasal septum caudally. The incisive bone, including upper incisor teeth and the rostral up- per lip, are derived from the primary palate. The nasal septum consists of bone, cartilage, and a patch of soft tissue membrane that separates right & left halves of the nasal cavity.
synonym: "medial nasal process" EXACT [EHDAA2:0001076]
synonym: "medial nasal swelling" RELATED [UBERON:cjm]
synonym: "medial-nasal process" EXACT [EMAPA:16808]
synonym: "prominentia nasalis medialis" RELATED LATIN [Wikipedia:Medial_nasal_prominence]
xref: EHDAA2:0001076
xref: EHDAA:4792
xref: EMAPA:16808
xref: http://upload.wikimedia.org/wikipedia/commons/8/85/Gray45.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Gray45.png/200px-Gray45.png
xref: SCTID:308877001
xref: VHOG:0000804
is_a: UBERON:0009292 ! embryonic nasal process
relationship: develops_from UBERON:0004066 {source="Wikipedia"} ! frontonasal prominence
relationship: part_of UBERON:0004066 {source="EHDAA2"} ! frontonasal prominence
[Term]
id: UBERON:0004069
name: accessory olfactory bulb
def: "the forebrain region that coordinates sensory signaling arising from the vomeronasal organ; it is located on the dorsal-posterior portion of the main olfactory bulb, and the axons that leave the accessory olfactory bulb project to targets in the amygdala and hypothalamus" [MP:0009945, Wikipedia:Olfactory_bulb#Accessory_olfactory_bulb]
synonym: "accessory olfactory formation" RELATED [MA:0000966]
synonym: "olfactory bulb accessory nucleus" EXACT [NIF_GrossAnatomy:nlx_anat_20090453]
xref: ABA:AOB
xref: BTO:0004797
xref: MA:0000966
xref: NIF_GrossAnatomy:nlx_anat_20090453
property_value: "spatially_disjoint_from" UBERON:0002266
property_value: "spatially_disjoint_from" UBERON:0002590
property_value: "spatially_disjoint_from" UBERON:0002893
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0002264 {source="cjm"} ! olfactory bulb
relationship: part_of UBERON:0005366 {source="MA"} ! olfactory lobe
[Term]
id: UBERON:0004070
name: cerebellum vermis lobule
def: "the region of a cerebellar lobule that resides in the central section of the cerebellum between the two hemispheres; in humans, vermis lobule regions may be nearly continuous with the cerebellar hemisphere lobules dorsally but are separated by deeper longitudinal fissues in the ventral regions; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres" [MP:0009957]
comment: TODO - define as a region overlapping
xref: MA:0002968
xref: NIF_GrossAnatomy:nlx_anat_20081223
is_a: UBERON:0004004 ! cerebellum lobule
relationship: part_of UBERON:0004720
intersection_of: UBERON:0004004 ! cerebellum lobule
intersection_of: part_of UBERON:0004720 ! cerebellar vermis
relationship: part_of UBERON:0004720 ! cerebellar vermis
[Term]
id: UBERON:0004071
name: cerebellum emboliform nucleus
def: "the small wedge shaped nucleus interposed between the dentate and fastigial nuclei; it receives axons from Purkinje cells of the intermediate area of the cerebral hemispheres and most of its efferent connections travel via the superior cerebellar peduncle" [MP:0009981]
xref: SCTID:279222003
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004072
name: cerebellum globose nucleus
def: "the two or three small masses of gray matter that is located medial to the emboliform nucleus and lateral to the fastigial nucleus; it receives axons from the intermediate area of the cerebellar hemispheres and its afferents exit through the superior cerebellar peduncle; it is recognized in human cerebellum but is not distinguishable in all mammalian species" [MP:0009982]
xref: SCTID:279223008
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004073
name: cerebellum interpositus nucleus
def: "the nucelus composed of the globose and emoliform nuclei of the cerebellum; in some mammalian species the globose nucleus is not distinguishable" [MP:0009984]
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004074
name: cerebellum vermis lobule I
def: "." [MP:0009988]
comment: TODO FMA:61904 lingual gyrus FMA:71032 lingula gyrus (lg)
synonym: "lingula" RELATED [MA:0000998]
synonym: "lingula (I)" EXACT [ABA:LING]
synonym: "lingula of anterior cerebellum vermis" EXACT []
synonym: "lingula of cerebellum" EXACT []
synonym: "lobule I of cerebellum vermis" EXACT []
synonym: "neuraxis lingula" EXACT []
xref: ABA:LING
xref: FMA:83884
xref: MA:0000998
xref: NIF_GrossAnatomy:birnlex_932
xref: SCTID:77232000
is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0003941 ! cerebellum anterior vermis
[Term]
id: UBERON:0004075
name: cerebellum vermis lobule II
def: "." [MP:0009989]
comment: central vs alar central? II and III? part_of CENT in ABA
synonym: "central lobule" BROAD [MA:0000999]
synonym: "central lobule of cerebellum" BROAD []
synonym: "lobule II" EXACT [ABA:CENT2]
synonym: "lobule II of cerebellum vermis" EXACT []
synonym: "vermic lobule II" EXACT [NIF_GrossAnatomy:nlx_anat_20081225]
xref: ABA:CENT2
xref: MA:0000999
xref: NIF_GrossAnatomy:nlx_anat_20081225
is_a: UBERON:0004003 ! cerebellum hemisphere lobule
is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule
relationship: part_of UBERON:0003021 {source="ABA"} ! central lobule
relationship: part_of UBERON:0003941 {source="MA"} ! cerebellum anterior vermis
[Term]
id: UBERON:0004076
name: cerebellum vermis lobule III
def: "." [MP:0009990]
comment: II or III?
synonym: "central lobule" BROAD [MA:0001000]
synonym: "central lobule of cerebellum" BROAD []
synonym: "lobule III" EXACT [ABA:CENT3]
synonym: "lobule III of cerebellum vermis" EXACT []
xref: ABA:CENT3
xref: MA:0001000
xref: NIF_GrossAnatomy:nlx_anat_20081226
is_a: UBERON:0004003 ! cerebellum hemisphere lobule
is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0003021 {source="ABA"} ! central lobule
relationship: part_of UBERON:0003941 ! cerebellum anterior vermis
[Term]
id: UBERON:0004077
name: cerebellum vermis lobule IV
def: "The culmen is the portion of the anterior vermis adjacent to the primary fissure of cerebellum. The culmen and the anterior parts of the quadrangular lobules form the lobus culminis[WP]." [MP:0009991, Wikipedia:Culmen_(cerebellum)]
synonym: "culmen of cerebellum" BROAD []
synonym: "lobule IV of cerebellum vermis" EXACT []
synonym: "neuraxis culmen" BROAD [FMA:83886]
xref: ABA:CUL4
xref: MA:0001001
xref: NIF_GrossAnatomy:nlx_anat_20081227
property_value: "spatially_disjoint_from" UBERON:0003021
is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule
relationship: part_of UBERON:0007763 {source="ABA"} ! cerebellum culmen
[Term]
id: UBERON:0004078
name: cerebellum vermis lobule IX
def: "." [MP:0009992]
synonym: "cerebellar posterior vermis lobule IX" EXACT [PMID:2022820]
synonym: "lobule IX of cerebellar posterior vermis" EXACT [PMID:2022820]
synonym: "lobule IX of cerebellum vermis" EXACT []
synonym: "neuraxis uvula" EXACT [FMA:83883]
synonym: "uvula (IX)" EXACT [ABA:UVU]
synonym: "uvula [vermis]" EXACT []
synonym: "uvula of cerebellum" EXACT [FMA:83883]
synonym: "uvula of vermis of cerebellum" EXACT []
synonym: "vermic lobule IX" EXACT [NIF_GrossAnatomy:nlx_anat_20081234]
xref: ABA:UVU
xref: FMA:83883
xref: MA:0001006
xref: NIF_GrossAnatomy:nlx_anat_20081234
is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004079
name: cerebellum vermis lobule V
def: "." [MP:0009993]
synonym: "culmen" BROAD [MA:0001002]
synonym: "culmen of cerebellum" BROAD []
synonym: "lobule V" EXACT [ABA:CUL5]
synonym: "lobule V of cerebellum vermis" EXACT []
synonym: "neuraxis culmen" BROAD [FMA:83886]
xref: ABA:CUL5
xref: MA:0001002
xref: NIF_GrossAnatomy:nlx_anat_20081228
is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule
relationship: part_of UBERON:0007763 {source="ABA"} ! cerebellum culmen
[Term]
id: UBERON:0004080
name: cerebellum vermis lobule VI
alt_id: UBERON:0000909
alt_id: UBERON:Declive-MA_0001003
def: "." [MP:0009994]
synonym: "declive" BROAD [MA:0001003]
synonym: "declive (VI)" EXACT [ABA:DEC]
synonym: "declive of cerebellum" EXACT []
synonym: "declive of vermis of cerebellum" EXACT []
synonym: "lobule VI of cerebellum vermis" EXACT []
synonym: "neuraxis declive" EXACT [FMA:83887]
synonym: "vermic lobule vi" EXACT [NIF_GrossAnatomy:nlx_anat_20081229]
xref: ABA:DEC
xref: FMA:83887
xref: MA:0001003
xref: NIF_GrossAnatomy:nlx_anat_20081229
xref: SCTID:279385000
is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0004009 ! cerebellum posterior vermis
[Term]
id: UBERON:0004081
name: cerebellum vermis lobule VII
def: "The folium vermis is a short, narrow, concealed band at the posterior extremity of the vermis, consisting apparently of a single folium, but in reality marked on its upper and under surfaces by secondary fissures. Laterally, it expands in either hemisphere into a considerable lobule, the superior semilunar lobule (lobulus semilunaris superior; postero-superior lobules), which occupies the posterior third of the upper surface of the hemisphere, and is bounded below by the horizontal sulcus. The superior semilunar lobules and the folium vermis form the lobus semilunaris." [MP:0009995, Wikipedia:Folium_(vermis)]
comment: check MA, MP, FMA, folium?
synonym: "folium" BROAD [MA:0001004]
synonym: "folium lobule" NARROW [MP:0009995]
synonym: "folium of cerebellum" EXACT []
synonym: "folium of vermis of cerebellum" EXACT []
synonym: "folium-tuber vermis (VII)" EXACT [ABA:FOTU]
synonym: "lobule VII of cerebellum vermis" EXACT []
synonym: "neuraxis folium" EXACT [FMA:83889]
synonym: "vermic lobule VII" EXACT [NIF_GrossAnatomy:nlx_anat_20081230]
xref: ABA:FOTU
xref: FMA:83889
xref: MA:0001004
xref: NIF_GrossAnatomy:nlx_anat_20081230
xref: SCTID:369044003
is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0004009 ! cerebellum posterior vermis
[Term]
id: UBERON:0004082
name: cerebellum vermis lobule VIII
alt_id: UBERON:0002312
def: "." [MP:0009996]
synonym: "cerebellum lobule VIII" EXACT []
synonym: "lobule VIII of cerebellum vermis" EXACT []
synonym: "neuraxis pyramis" EXACT []
synonym: "neuraxis pyramus" EXACT []
synonym: "pyramis" EXACT [NIF_GrossAnatomy:nlx_anat_20081233]
synonym: "pyramis of vermis of cerebellum" EXACT [FMA:83888]
synonym: "pyramus" BROAD [MA:0001005]
synonym: "pyramus" RELATED []
synonym: "pyramus (VIII)" EXACT [ABA:PYR]
synonym: "pyramus of cerebellum" EXACT []
synonym: "pyramus of vermis of cerebellum" EXACT [FMA:83888]
synonym: "vermic lobule VIII" EXACT [NIF_GrossAnatomy:nlx_anat_20081233]
xref: ABA:PYR
xref: FMA:83888
xref: MA:0001005
xref: NIF_GrossAnatomy:nlx_anat_20081233
is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0004009 ! cerebellum posterior vermis
[Term]
id: UBERON:0004083
name: cerebellum vermis lobule X
def: "." [MP:0009997]
synonym: "lobule X of cerebellum vermis" EXACT []
synonym: "neuraxis nodulus" EXACT []
synonym: "nodulus" BROAD [MA:0001007]
synonym: "nodulus (X)" EXACT [ABA:NOD]
synonym: "nodulus of cerebellum" EXACT []
synonym: "nodulus of vermis of cerebellum" EXACT []
xref: ABA:NOD
xref: FMA:83882
xref: MA:0001007
xref: NIF_GrossAnatomy:birnlex_1165
is_a: UBERON:0004070 {source="MA"} ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004084
name: labium
def: "the folds of skin which form the inner lips (labia minora) on both sides of the vaginal opening " [MP:0003520]
synonym: "labia" EXACT PLURAL []
xref: EMAPA:30837
xref: galen:Labia
xref: MA:0002464
xref: ncithesaurus:Labium
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000997 {source="MA"} ! mammalian vulva
[Term]
id: UBERON:0004085
name: labium majora
def: "The labia majora are two prominent longitudinal cutaneous folds which extend downward and backward from the mons pubis to the perineum and form the lateral boundaries of the cleft of venus, which contains the labia minora, interlabial sulci, clitoral hood, clitoral glans, frenulum clitoridis, the Hart's Line, and the vulval vestibule, which contains the external openings of the urethra and the vagina. Each labium majus has two surfaces, an outer, pigmented and covered with strong, crisp hairs; and an inner, smooth and beset with large sebaceous follicles. Between the two there is a considerable quantity of areolar tissue, fat, and a tissue resembling the dartos tunic of the scrotum, besides vessels, nerves, and glands. The Labia Majora are thicker in front, where they form by their meeting the anterior commisure of the labia majora. Posteriorly they are not really joined, but appear to become lost in the neighboring integument, ending close to — and nearly parallel with — each other. Together with the connecting skin between them, they form the posterior commisure of the labia majora or posterior boundary of the pudendum. The interval between the posterior commissure of the labia majora and the anus, from 2.5 to 3 cm. in length, constitutes the perineum. The labia majora correspond to the scrotum in the male. Between the labia majora and the inner thighs are the labiocrural folds. Between the labia majora and labia minora are the interlabial sulci. [WP,unvetted]." [Wikipedia:Labia_majora]
synonym: "labia majorum" EXACT []
synonym: "labium majora" EXACT []
synonym: "labium majus" EXACT []
synonym: "labium majus pudendi" RELATED LATIN [Wikipedia:Labia_majora]
xref: FMA:20367
xref: galen:LabiaMajora
xref: http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png
xref: MA:0002844
xref: ncithesaurus:Labium_Majus
xref: SCTID:362237001
is_a: UBERON:0004084 ! labium
relationship: develops_from UBERON:0011755 {notes="posterior labial commissure", source="Wikipedia"} ! female labial swelling
[Term]
id: UBERON:0004086
name: brain ventricle
def: "one of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid" []
comment: Note that FMA draws the distinction between e.g. 'fourth ventricle' and 'cavity of fourth ventricle'. The former is a cavity, and part of the latter, which is a region. The superclass of 'fourth ventricle' is_a 'region of ventricular system of the brain'. We place this class here, although it is not equivalent to ventricles, as it includes ventricle bodies.
synonym: "cerebral ventricle" EXACT [HP:0002118]
synonym: "region of ventricular system of brain" EXACT [FMA:78447]
xref: BTO:0001442
xref: EFO:0001914
xref: EV:0100306
xref: FMA:78447
xref: MA:0000818
xref: MESH:A.08.186.211.276
xref: ncithesaurus:Ventricle_Brain
xref: NIF_GrossAnatomy:birnlex_1356
xref: OpenCyc:Mx4rvmTY65wpEbGdrcN5Y29ycA
xref: SCTID:180929003
is_a: UBERON:0005358 ! ventricle of nervous system
relationship: part_of UBERON:0005282 ! ventricular system of brain
[Term]
id: UBERON:0004087
name: vena cava
def: "The superior and inferior vena cava are collectively called the venae cavae. They are the veins that return deoxygenated blood from the body into the heart. They both empty into the right atrium. The inferior vena cava (or posterior vena cava in animals) travels up alongside the abdominal aorta with blood from the lower part of the body (see # 11 in the diagram). It is the largest vein in the body. The superior vena cava (or anterior vena cava in animals) is above the heart, and forms from a convergence of the left and right brachiocephalic veins that contain blood from the head and the arms (see # 3 in the diagram). [WP,unvetted]." [Wikipedia:Venae_cavae]
xref: AAO:0010215
xref: BTO:0001438
xref: EMAPA:18415
xref: GAID:547
xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Relations_of_the_aorta\,_trachea\,_esophagus_and_other_heart_structures.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Heart_numlabels.png/200px-Heart_numlabels.png
xref: MA:0000068
xref: MESH:A.07.231.908.949
xref: ncithesaurus:Vena_Cava
xref: OpenCyc:Mx4rkJQ4U6gEEdudWQACs5b6Bw
xref: SCTID:244405007
is_a: UBERON:0003479 ! thoracic cavity vein
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0004088
name: ocular region
def: "." [HP:0000284]
comment: TODO: consider the following: eyeball (eye proper) part_of eye (= eyeball+eyelid etc) part_of ocular region (= eye + eyebrow); note the FMA class is more narrow though, and is more like eye + muscles + vasculature // in HP covers eyelid, eyebrow
synonym: "content of orbital part of eye" EXACT [FMA:260119]
synonym: "eye region" EXACT [OBOL:automatic]
xref: FMA:260119
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0004089
name: midface
def: "the middle of the face including the nose and its associated bony structures[MW]." [HP:0000309, http://www.merriam-webster.com/medical/midface]
comment: editors note: this class is currently a union of the snout (e.g. in mouse), the midface and the lower face. Note that in MA, snout includes the whole jaw and should thus be more alike the lower face than the midface, so its placement here is not strictly accurate. In future we might introduce specific classes for each of these, and include the full parthood relationships. if this is done, then care should be taken to preserve inferences such as an abnormality of the lower face being an abnormality of the midface.
synonym: "lower face" RELATED []
synonym: "midface/lower face" RELATED []
synonym: "snout" RELATED SENSU [MA:0001910]
xref: MA:0001910
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0004090
name: periorbital region
def: "." [HP:0000606]
comment: AO notes: does not contain any subparts in FMA. In HP covers eyelid, eyebrow, soft tissue
synonym: "periorbita" EXACT [FMA:59351]
synonym: "periorbital area" EXACT [MA:0002875]
xref: FMA:59351
xref: MA:0002875
xref: SCTID:362646004
is_a: UBERON:0000477 ! anatomical cluster
relationship: has_part UBERON:0002515 ! periosteum
relationship: part_of UBERON:0001456 ! face
relationship: surrounds UBERON:0004867 ! orbital cavity
[Term]
id: UBERON:0004092
name: hypothalamus-pituitary axis
def: "." [HP:0000864]
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0004095
name: corticospinal tract
def: "The corticospinal or pyramidal tract is a collection of axons that travel between the cerebral cortex of the brain and the spinal cord. The corticospinal tract mostly contains motor axons. It actually consists of two separate tracts in the spinal cord: the lateral corticospinal tract and the medial corticospinal tract. An understanding of these tracts leads to an understanding of why for the most part, one side of the body is controlled by the opposite side of the brain. Also the corticobulbar tract is considered to be a pyramidal tract. The corticobulbar tract carries signals that control motor neurons located in cranial nerve brain nuclei rather than motor neurons located in the spinal cord. The neurons of the pyramidal tracts are pyramidal neurons, but that is not how the pyramidal tract got its name, as most of the pyramidal neurons send their axons elsewhere. Instead, it got its name from the shape of the corticospinal axon tracts: when the pyramidal tract passes the medulla, it forms a dense bundle of nerve fibres that is shaped somewhat like a pyramid. [WP,unvetted]." [HP:0002492, Wikipedia:Corticospinal_tract]
synonym: "tractus corticospinalis" RELATED LATIN [Wikipedia:Corticospinal_tract]
xref: BM:CST
xref: http://upload.wikimedia.org/wikipedia/commons/a/ac/Gray684.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Gray684.png/200px-Gray684.png
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002707 ! pyramidal tract
[Term]
id: UBERON:0004096
name: odontoid process of cervical vertebra 2
alt_id: UBERON:0005210
def: "The toothlike process on the upper surface of the axis, which articulates with the atlas above[GAID]." [GAID:238, HP:0003310, Wikipedia:Wikipedia:Dens_(anatomy)]
comment: TODO check AAO:0000721 odontoid_process -- Anterior process located between the atlantal cotyles that projects into the foramen magnum of the skull and bears facets that articulate with the lateral walls of the foramen
synonym: "axis dens" EXACT [FMA:24043]
synonym: "axis odontoid process" EXACT [MA:0002872]
synonym: "cervical vertebra 2 odontoid process" EXACT [MA:0002872]
synonym: "dens" EXACT [EMAPA:26535]
synonym: "dens of axis" EXACT [FMA:24043]
synonym: "odontoid" RELATED [Wikipedia:Wikipedia:Dens_(anatomy)]
synonym: "odontoid process" EXACT [FMA:24043]
synonym: "odontoid process of axis" EXACT [FMA:24043]
xref: AAO:0000721
xref: EMAPA:26535
xref: FMA:24043
xref: GAID:238
xref: MA:0002872
xref: MESH:A.02.835.232.834.151.383.668
xref: ncithesaurus:Odontoid_Process
xref: OpenCyc:Mx4rwIYGoJwpEbGdrcN5Y29ycA
xref: SCTID:181899003
property_value: UBPROP:0000001 "Anterior process located between the atlantal cotyles that projects into the foramen magnum of the skull and bears facets that articulate with the lateral walls of the foramen.[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001093 ! second cervical vertebra
[Term]
id: UBERON:0004097
name: renin-aldosterone axis
def: "." [HP:0003350]
is_obsolete: true
[Term]
id: UBERON:0004098
name: tibial plateaux
def: "." [HP:0003832]
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000979 ! tibia
[Term]
id: UBERON:0004099
name: joint space of elbow
def: "Joint cavity shared by all the joints of the elbow. The elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis. All three share a joint cavity which is highly sinuated/scalloped/coved. Joint spaces of the elbow summarizes the joint cavity shared by all three adjoining joints of the elbow joint." [HP:0003943]
synonym: "synovial cavity of elbow joint" EXACT [FMA:38911]
xref: FMA:38911
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001490
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: part_of UBERON:0001490 ! elbow joint
relationship: part_of UBERON:0001490 ! elbow joint
[Term]
id: UBERON:0004100
name: renal collecting system
def: "The collecting duct system of the kidney consists of a series of tubules and ducts that connect the nephrons to the ureter. It participates in electrolyte and fluid balance through reabsorption and excretion, processes regulated by the hormones aldosterone and antidiuretic hormone." [HP:0004742, Wikipedia:Collecting_duct_system]
synonym: "collecting_duct_system" EXACT [Wikipedia:Collecting_duct_system]
synonym: "tubulus renalis colligens" RELATED LATIN [Wikipedia:Collecting_duct_system]
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0004101
name: nasolabial region
def: "." [HP:0005289]
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000004 ! olfactory apparatus
[Term]
id: UBERON:0004102
name: tracheobronchial system
def: "." [HP:0005607]
is_a: UBERON:0000467 ! anatomical system
relationship: has_part UBERON:0002185 ! bronchus
relationship: has_part UBERON:0003126 ! trachea
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004103
name: alveolar ridge
def: "one of the two jaw ridges either on the roof of the mouth between the upper teeth and the hard palate or on the bottom of the mouth behind the lower teeth[WP]. The alveolar ridges contain the sockets (alveoli) of the teeth[HP]." [HP:0006477, Wikipedia:Alveolar_ridge]
comment: note that in BTO, this is part of an embryo
synonym: "alveolar body" EXACT [MP:0004189]
synonym: "alveolar bone" EXACT [MP:0004189]
synonym: "alveolar margin" EXACT []
synonym: "alveolar process" EXACT [GAID:215]
xref: BTO:0001383
xref: GAID:215
xref: MESH:A.02.835.232.781.324.502.125
xref: ncithesaurus:Alveolar_Ridge
xref: SCTID:245790000
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0008969 {source="PMID:19767574", source="Wikipedia"} ! dental follicle
relationship: part_of UBERON:0001708 ! jaw skeleton
[Term]
id: UBERON:0004104
name: hairline
def: "." [HP:0009553]
is_a: UBERON:0000061 ! anatomical structure
relationship: adjacent_to UBERON:0001037 ! strand of hair
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0004105
name: subungual region
def: "." [HP:0009723]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001705 ! nail
[Term]
id: UBERON:0004106
name: crus of ear
def: "horizontal piece of cartilage located outside the ear canal that divides the upper and lower parts of the ear." [HP:0009895]
synonym: "crus helicis" EXACT [FMA:61024, FMA:TA]
synonym: "crus of helical part of auricular cartilage" EXACT []
synonym: "crus of helix" EXACT [FMA:61024]
xref: FMA:61024
xref: ncithesaurus:Crus_Helicis
xref: SCTID:362547004
is_a: UBERON:0001867 ! cartilage of external ear
relationship: part_of UBERON:0001848 ! auricular cartilage
[Term]
id: UBERON:0004108
name: clivus of occipital bone
def: "Part of the cranium, the clivus is a shallow depression behind the dorsum sellC& that slopes obliquely backward. It forms a gradual sloping process at the anterior most portion of the basilar occipital bone at its junction with the sphenoid bone. On axial planes, it sits just posterior to the sphenoid sinuses. Just lateral to the clivus bilaterally is the foramen lacerum which contains the internal carotid artery, proximal to its anastamosis with the Circle of Willis. Posterior to the clivus is the basilar artery. The clivus supports the upper part of the pons." [HP:0010558, Wikipedia:Clivus_%28anatomy%29]
comment: The clivus is an important landmark for checking for anatomical atlanto-occipital alignment; the clivus, when viewed on a lateral C-spine X-ray, forms a line which, if extended, is known as Wackenheim's clivus line. Wackenheim's clivus line should pass through the dens of the axis or be tangential to it. Editor note: check relationships.
synonym: "clivus" EXACT [HP:0010558]
synonym: "occipital bone clivus" EXACT [FMA:75747]
synonym: "Wackenheim's clivus line" RELATED [Wikipedia:Clivus_%28anatomy%29]
xref: FMA:75747
xref: http://upload.wikimedia.org/wikipedia/commons/c/c5/Clivus.png
xref: ncithesaurus:Clivus
xref: SCTID:361736007
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: adjacent_to UBERON:0001677 {source="Wikipedia"} ! sphenoid bone
relationship: part_of UBERON:0001676 {source="FMA"} ! occipital bone
relationship: part_of UBERON:0008788 {source="HP:0010558"} ! posterior cranial fossa
[Term]
id: UBERON:0004109
name: cortex of humerus
def: "." [HP:0010629]
synonym: "compact bone of humerus" EXACT [FMA:31542]
synonym: "cortex of the humerus" EXACT []
synonym: "humerus compact bone" EXACT []
synonym: "humerus cortical bone" EXACT []
xref: FMA:31542
is_a: UBERON:0001439 ! compact bone
is_a: UBERON:0004269 ! upper arm connective tissue
is_a: UBERON:0005808 ! bone tissue of long bone
relationship: part_of UBERON:0000976
intersection_of: UBERON:0001439 ! compact bone
intersection_of: part_of UBERON:0000976 ! humerus
relationship: part_of UBERON:0000976 ! humerus
[Term]
id: UBERON:0004110
name: midnasal cavity
def: "includes the cavity between the nares and the choanae." [HP:0010641]
is_a: UBERON:0002553 ! anatomical cavity
relationship: adjacent_to UBERON:0004771 ! posterior nasal aperture
relationship: adjacent_to UBERON:0005928 ! external naris
relationship: part_of UBERON:0001707 ! nasal cavity
[Term]
id: UBERON:0004111
name: anatomical conduit
def: "any opening in the body." [Wikipedia:Foramen]
comment: note that FMA has both conduit and conduit space. In EHDAA2 this is a surface feature
synonym: "foramen" NARROW [EHDAA2:0003080]
synonym: "foramina" NARROW PLURAL [UBERON:cjm]
xref: AEO:0000080
xref: EHDAA2:0003080
xref: FMA:242873
is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster
[Term]
id: UBERON:0004112
name: muscle of middle ear
def: "A muscle of head that is part of a tympanic cavity [Obol]." [OBOL:automatic]
comment: check tympanic cavity vs middle ear. the same for muscles?
synonym: "muscle of tympanic cavity" EXACT []
synonym: "tympanic cavity muscle" EXACT []
xref: MA:0000256
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0002376 ! muscle of head
relationship: part_of UBERON:0004114
intersection_of: UBERON:0002376 ! muscle of head
intersection_of: part_of UBERON:0004114 ! tympanic cavity
relationship: part_of UBERON:0004114 ! tympanic cavity
[Term]
id: UBERON:0004113
name: muscle of auditory ossicle
synonym: "auditory ossicles muscle" EXACT [FMA:49026]
synonym: "muscle of auditory ossicles" EXACT [FMA:49026]
synonym: "ossicular muscle" EXACT [FMA:49026]
xref: FMA:49026
xref: SCTID:244778009
is_a: UBERON:0002376 ! muscle of head
relationship: attaches_to UBERON:0001686
intersection_of: UBERON:0002376 ! muscle of head
intersection_of: attaches_to UBERON:0001686 ! auditory ossicle
relationship: attaches_to UBERON:0001686 ! auditory ossicle
[Term]
id: UBERON:0004114
name: tympanic cavity
def: "small cavity surrounding the bones of the middle ear." [Wikipedia:Tympanic_cavity]
synonym: "anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "cavitas tympani" EXACT [Wikipedia:Tympanic_cavity]
synonym: "cavitas tympani" RELATED LATIN [Wikipedia:Tympanic_cavity]
synonym: "cavity of middle ear" EXACT [OBOL:automatic]
synonym: "middle ear cavity" EXACT [OBOL:automatic]
synonym: "tympanum" RELATED [BTO:0002098]
xref: BTO:0002098
xref: EHDAA2:0004119
xref: EV:0100358
xref: FMA:56461
xref: http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png
xref: SCTID:362551002
is_a: UBERON:0002553 {source="FMA"} ! anatomical cavity
is_a: UBERON:0005082 ! tube lumen
is_a: UBERON:0010064 {source="EHDAA2"} ! open anatomical space
relationship: developmentally_replaces UBERON:0005625 {source="EHDAA2"} ! tubotympanic recess
relationship: part_of UBERON:0001756 ! middle ear
relationship: surrounded_by UBERON:0010063 ! tympanic cavity epithelium
relationship: surrounds UBERON:0001686 ! auditory ossicle
[Term]
id: UBERON:0004115
name: blood vessel of tympanic cavity
def: "A blood vessel that is part of a tympanic cavity [Obol]." [OBOL:automatic]
synonym: "anatomical cavity of middle ear blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "blood vessel of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "blood vessel of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "blood vessel of middle ear cavity" EXACT [OBOL:automatic]
synonym: "cavity of middle ear blood vessel" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity blood vessel" EXACT [OBOL:automatic]
synonym: "middle ear blood vessel" EXACT []
synonym: "middle ear cavity blood vessel" EXACT [OBOL:automatic]
synonym: "tympanic cavity blood vessel" EXACT []
xref: MA:0001219
is_a: UBERON:0003496 ! head blood vessel
relationship: part_of UBERON:0004114
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0004114 ! tympanic cavity
relationship: part_of UBERON:0004114 ! tympanic cavity
[Term]
id: UBERON:0004116
name: nerve of tympanic cavity
def: "A nerve that is part of a tympanic cavity [Obol]." [OBOL:automatic]
synonym: "anatomical cavity of middle ear nerve" EXACT [OBOL:automatic]
synonym: "cavity of middle ear nerve" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity nerve" EXACT [OBOL:automatic]
synonym: "middle ear cavity nerve" EXACT [OBOL:automatic]
synonym: "nerve blood vessel" EXACT []
synonym: "nerve of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "nerve of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "nerve of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "nerve of middle ear cavity" EXACT [OBOL:automatic]
synonym: "tympanic cavity nerve" EXACT []
synonym: "tympanic cavity nerves" EXACT [MA:0001222]
xref: MA:0001222
is_a: UBERON:0001021 ! nerve
relationship: part_of UBERON:0004114
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0004114 ! tympanic cavity
relationship: part_of UBERON:0004114 ! tympanic cavity
[Term]
id: UBERON:0004117
name: pharyngeal pouch
def: "embryonic structure that forms on the endodermal side between the pharyngeal arches, and pharyngeal grooves (or clefts) form the lateral ectodermal surface of the neck region to separate the arches. The pouches line up with the clefts, and these thin segments become gills in fish[WP]. Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits[ZFA]." [Wikipedia:Pharyngeal_pouch_(embryology)]
comment: AO notes: VHOG and EMAPAA distinguish between pouch endoderm and pouch but we merge those here. Editor notes: consider adding location (precursor) - i.e. internal (endodermal) // The pouches are polarized structures. For example, whereas the rostral half of each pouch expresses Bmp-7, the caudal half expresses FGF-8 and the dorsal aspect of each pouch is marked via its expression of Pax-1. each pouch has an individual sense of identity. Shh expression is a prominent early feature of the caudal endoderm of the second arch, and individual pouches mark the anterior limits of expression of Hox genes within the pharyngeal endoderm; Hox-a2 has a rostral boundary at the second pouch, Hox-a3 at the third pouch and Hox-a4 at the most caudal pouch[PMID:16313389]
subset: vertebrate_core
synonym: "branchial pouch" EXACT [Wikipedia:Branchial_pouch]
synonym: "visceral pouch" EXACT SENSU []
xref: AAO:0011113
xref: EFO:0003627
xref: EHDAA:1086
xref: EHDAA:1669
xref: EHDAA:579
xref: EHDAA:617
xref: ncithesaurus:Pharyngeal_Pouch
xref: SCTID:34674002
xref: TAO:0001106
xref: VHOG:0001203
xref: XAO:0000282
xref: ZFA:0001106
property_value: UBPROP:0000001 "Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits. Crump et al, 2004.[TAO]" xsd:string
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: develops_from UBERON:0007690 {source="EHDAA2", source="ZFA"} ! early pharyngeal endoderm
relationship: overlaps UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0008814 ! pharyngeal system
[Term]
id: UBERON:0004118
name: vasculature of iris
def: "A vasculature that is part of a iris [Obol]." [OBOL:automatic]
synonym: "iris blood vessels" EXACT [OBOL:automatic]
synonym: "iris vascular network" EXACT [OBOL:automatic]
synonym: "iris vasculature" EXACT []
synonym: "vascular network of iris" EXACT [OBOL:automatic]
xref: ZFA:0005568
is_a: UBERON:0002203 ! vasculature of eye
relationship: part_of UBERON:0001769
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0004119
name: endoderm-derived structure
def: "An anatomical structure that develops (entirely or partially) from the endoderm." [UBERON:cjm]
comment: Grouping term for query purposes
subset: grouping_class
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0000925
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000925 ! endoderm
relationship: develops_from UBERON:0000925 ! endoderm
[Term]
id: UBERON:0004120
name: mesoderm-derived structure
def: "An anatomical structure that develops (entirely or partially) from the mesoderm." [UBERON:cjm]
comment: Grouping term for query purposes
subset: grouping_class
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0000926
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000926 ! mesoderm
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0004121
name: ectoderm-derived structure
def: "An anatomical structure that develops (entirely or partially) from the ectoderm." [UBERON:cjm]
comment: Grouping term for query purposes
subset: grouping_class
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0000924
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0004122
name: genitourinary system
synonym: "genitourinary tract" RELATED []
synonym: "GU tract" RELATED []
synonym: "urogenital system" EXACT []
synonym: "urogenital tract" RELATED [BTO:0003091]
synonym: "Urogenitalsystem" RELATED [BTO:0003091]
xref: AAO:0000624
xref: BILA:0000122
xref: BTO:0003091
xref: EFO:0003864
xref: EHDAA:1013
xref: EMAPA:16367
xref: EV:0100094
xref: GAID:362
xref: galen:GenitoUrinarySystem
xref: MESH:A.05
xref: ncithesaurus:Genitourinary_System
xref: OpenCyc:Mx4rQRpVMgAKEdyHxgDggVfs8g
xref: SCTID:278861008
xref: VHOG:0000286
xref: XAO:0000140
property_value: UBPROP:0000001 "Anatomical system that has as its parts the organs concerned with the production and excretion of urine and those concerned with reproduction.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: differentiates_from intermediate mesoderm (AAO:0010575) CHANGED TO: develops_from intermediate mesoderm (UBERON:0003064)[AAO]" xsd:string
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: has_part UBERON:0000990
relationship: has_part UBERON:0001008
intersection_of: UBERON:0000467 ! anatomical system
intersection_of: has_part UBERON:0000990 ! reproductive system
intersection_of: has_part UBERON:0001008 ! excretory system
relationship: develops_from UBERON:0003064 {source="AAO"} ! intermediate mesoderm
relationship: has_part UBERON:0000990 ! reproductive system
relationship: has_part UBERON:0001008 ! excretory system
[Term]
id: UBERON:0004123
name: myocardial layer
synonym: "layer of myocardium" EXACT []
synonym: "myocardium layer" EXACT []
xref: MA:0000080
is_a: UBERON:0005983 ! heart layer
relationship: part_of UBERON:0002349
intersection_of: UBERON:0004923 ! organ component layer
intersection_of: part_of UBERON:0002349 ! myocardium
relationship: part_of UBERON:0002349 ! myocardium
[Term]
id: UBERON:0004124
name: myocardium trabecular layer
def: "The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. In zebrafish, unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae have more strut-like character, and are more uniform without apparent regional differences[ZFA]." [ZFA:0005059]
subset: vertebrate_core
synonym: "myocardial trabecular layer" EXACT []
synonym: "trabecular layer" EXACT [ZFA:0005059]
xref: EFO:0003706
xref: MA:0002866
xref: TAO:0005059
xref: ZFA:0005059
property_value: UBPROP:0000001 "The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the the endocardium. Unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae of the zebrafish have more strut-like character, and are more uniform without apparent regional differences Hu et al. 2001.[TAO]" xsd:string
is_a: UBERON:0004123 ! myocardial layer
[Term]
id: UBERON:0004125
name: myocardial compact layer
def: " outer dense layer of the myocardium uniting the epicardium and myocardium[MP]." [MP:0004056]
synonym: "myocardium compact layer" EXACT [MA:0002865]
xref: MA:0002865
is_a: UBERON:0004123 ! myocardial layer
[Term]
id: UBERON:0004126
name: trabecular layer of ventricle
comment: todo - check FMA
subset: vertebrate_core
synonym: "myocardium of region of ventricle" EXACT [FMA:83511]
synonym: "trabecular cardiac ventricle muscle" EXACT [GO:0003222]
synonym: "ventricular trabecular myocardium" EXACT [GO:0003222]
xref: FMA:83511
xref: TAO:0005060
xref: ZFA:0005060
is_a: UBERON:0004124 ! myocardium trabecular layer
relationship: part_of UBERON:0002082
intersection_of: UBERON:0004124 ! myocardium trabecular layer
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0004127
name: compact layer of ventricle
def: "The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle." [ZFA:0005062]
synonym: "compact cardiac ventricle muscle" EXACT []
synonym: "ventricle myocardium compact zone" EXACT [MP:0010556]
synonym: "ventricular compact myocardium" EXACT []
synonym: "ventricular myocardial compact layer" EXACT [MP:0010556]
synonym: "ventricular myocardial compact zone" EXACT [MP:0010556]
xref: TAO:0005062
xref: ZFA:0005062
property_value: UBPROP:0000001 "The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle.[TAO]" xsd:string
is_a: UBERON:0004125 ! myocardial compact layer
relationship: part_of UBERON:0002082
intersection_of: UBERON:0004125 ! myocardial compact layer
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0001083 {source="ZFA"} ! myocardium of ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0004128
name: optic vesicle
def: "The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portion of tissue that is comprised of neuroepitheium which has pinched off from the anterior neural keel and will form the optic cup[ZFA]." [GO:0003404, Wikipedia:Optic_vesicles]
comment: Genes: Six3, Pax6, Rx1 are expressed together in the tip of the neural plate [ISBN:9780878932504 "Developmental Biology"]. Development notes: During subsequent develop- ment, the optic vesicle invaginates and becomes a two-layered structure with an inner neural retina and outer retinal pigment epithelium. As soon as the developing optic vesicle makes contact with the overlying ectoderm, it induces the ectoderm to thicken and form the lens placode PMID:16496288
subset: vertebrate_core
synonym: "evagination" RELATED []
xref: AAO:0011039
xref: EHDAA2:0001320
xref: EMAPA:16540
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e0/Gray863.png/200px-Gray863.png
xref: ncithesaurus:Optic_Vesicle
xref: SCTID:362864008
xref: TAO:0000050
xref: VHOG:0000165
xref: XAO:0000228
xref: ZFA:0000050
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0003071 {source="ZFA"} ! eye primordium
relationship: induced_by UBERON:0004880 ! chordamesoderm
relationship: part_of UBERON:0010312 {source="ZFA"} ! immature eye
[Term]
id: UBERON:0004129
name: growth plate cartilage
def: "cartilage that will provide a scaffold for mineralization of endochondral bones as they elongate or grow." [GO:0003417]
synonym: "growth plate" RELATED []
is_a: UBERON:0002418 ! cartilage tissue
relationship: surrounds UBERON:0002513 ! endochondral bone
[Term]
id: UBERON:0004130
name: cerebellar layer
synonym: "cell layer of cerebellar cortex" EXACT []
synonym: "gray matter layer of cerebellum" EXACT [FMA:83141]
synonym: "layer of cerebellar cortex" EXACT []
xref: FMA:83141
xref: MA:0000201
xref: ncithesaurus:Cortical_Cell_Layer_of_the_Cerebellum
xref: SCTID:360478008
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0004132
name: trigeminal sensory nucleus
def: "The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. The nucleus is divided into three parts, from rostral to caudal (top to bottom in humans): * The mesencephalic nucleus * The chief sensory nucleus (or pontine nucleus or main sensory nucleus or primary nucleus) * The spinal trigeminal nucleus[WP]." [Wikipedia:Trigeminal_nuclei]
comment: TODO: check ZFA link. note this is part of medulla in ZFA, but we do not include this link here as it leads to inconsistencies
subset: vertebrate_core
synonym: "sensory trigeminal nucleus" EXACT [ZFA:0000433]
synonym: "sensory trigeminal V nucleus" EXACT []
synonym: "trigeminal sensory nucleus" EXACT [GO:0021730]
synonym: "trigeminal V sensory nucleus" EXACT [MA:0001030]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0001030
xref: SCTID:280170001
xref: TAO:0000433
xref: VHOG:0001356
xref: ZFA:0000433
is_a: UBERON:0000126 {source="FMA"} ! cranial nerve nucleus
is_a: UBERON:0002925 ! trigeminal nucleus
relationship: part_of UBERON:0002925 {source="MA"} ! trigeminal nucleus
[Term]
id: UBERON:0004133
name: salivatory nucleus
def: "." [GO:0021751]
synonym: "salivary nucleus" EXACT [GO:0021751]
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0004134
name: proximal tubule
def: "In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the loop of Henle. It has a brush border epithelial morphology[GO]." [GO:0072014]
comment: todo - ensure definition works across species.
synonym: "proximal kidney tubule" EXACT [MESH:A.05.810.453.736.560.570]
synonym: "renal proximal tubule" EXACT []
xref: BTO:0001498
xref: EMAPA:28281
xref: MA:0002611
xref: MESH:A.05.810.453.736.560.570
is_a: UBERON:0006853 ! renal cortex tubule
relationship: continuous_with UBERON:0001230 {source="GO"} ! glomerular capsule
relationship: continuous_with UBERON:0001289 {source="GO"} ! descending limb of loop of Henle
relationship: part_of UBERON:0001225 {notes="checkme"} ! cortex of kidney
relationship: part_of UBERON:0001231 {source="multiple"} ! nephron tubule
[Term]
id: UBERON:0004135
name: distal tubule
def: "The distal tubule is a nephron tubule that consists of the convoluted and straight distal tubule segments" [GO:0072017]
synonym: "renal distal tubule" EXACT []
xref: BTO:0000482
xref: EMAPA:28387
xref: MA:0002633
xref: MESH:A.05.810.453.736.560.540
is_a: UBERON:0007685 ! region of nephron tubule
[Term]
id: UBERON:0004136
name: intermediate tubule
def: "The intermediate tubule is a nephron tubule that lies between the proximal and distal tubules" [GO:0072018]
comment: todo - check for applicability across species
synonym: "renal intermediate tubule" EXACT []
synonym: "tubulus attenuatus" EXACT [FMA:17718]
xref: FMA:17718
is_a: UBERON:0007685 ! region of nephron tubule
relationship: part_of UBERON:0001288 {source="FMA"} ! loop of Henle
[Term]
id: UBERON:0004138
name: somitomeric trunk muscle
def: "The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. An example of this process is found in Mus musculus.[GO]." [GO:0002075]
comment: TODO - find N+S conditions. SMT & develops_from somite is not specific enough (all SMT develops_from somite)
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: develops_from UBERON:0002329 ! somite
[Term]
id: UBERON:0004139
name: cardiogenic plate
def: "The first recognizable structure derived from the heart field" [GO:0003142]
comment: TODO - check plate vs rudiment vs primordium vs endocardial tube. See XAO
synonym: "cardiogenic crescent" RELATED [GO:0003142]
synonym: "heart rudiment" RELATED []
synonym: "myocardial plate" EXACT [EHDAA2:0000215]
xref: EHDAA2:0000215
xref: EMAPA:16106
xref: VHOG:0000975
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003084 ! heart primordium
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0004140
name: heart field
def: "a specific region of the lateral mesoderm in which the heart will develop." [GO:0003128]
comment: note that this term denotes the primary heart field; GO:0003128 denotes the superclass of primary and secondary: specific region of the lateral mesoderm into the area which will form the primary beating heart tube[GO:0003138]
synonym: "primary heart field" EXACT [PMID:17276708, XAO:0004185]
xref: XAO:0004185
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0003081 {source="GO:0003128"} ! lateral plate mesoderm
[Term]
id: UBERON:0004141
name: heart tube
def: "Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation[ZFA]." [GO:0003143, ZFA:0000360]
subset: vertebrate_core
synonym: "early primitive heart tube" EXACT [EMAPA:16208]
synonym: "embryonic heart tube" RELATED []
xref: AAO:0010411
xref: EFO:0003526
xref: EHDAA:424
xref: EMAPA:16208
xref: TAO:0000360
xref: XAO:0000337
xref: ZFA:0000360
is_a: UBERON:0003914 ! epithelial tube
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0005498 {source="ZFA"} ! primitive heart tube
[Term]
id: UBERON:0004142
name: outflow tract septum
def: "The outflow tract septum is a partition in the outflow tract" [GO:0003148]
is_a: UBERON:0002099 ! cardiac septum
relationship: part_of UBERON:0004145
intersection_of: UBERON:0002099 ! cardiac septum
intersection_of: part_of UBERON:0004145 ! outflow tract
relationship: part_of UBERON:0004145 ! outflow tract
[Term]
id: UBERON:0004143
name: membranous septum
def: "The membranous septum is the upper part of ventricular septum." [GO:0003149]
is_a: UBERON:0002099 ! cardiac septum
relationship: part_of UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0004144
name: muscular septum
def: "The muscular septum is the lower part of the ventricular septum" [GO:0003150]
is_a: UBERON:0002099 ! cardiac septum
relationship: part_of UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0004145
name: outflow tract
def: "The outflow tract is the portion of the heart through which blood flows into the arteries" [GO:0003151]
synonym: "cardiac outflow tract" EXACT []
xref: EHDAA2:0001351
xref: EHDAA:464
xref: EHDAA:798
xref: EMAPA:16229
xref: EMAPA:16346
xref: MA:0000100
xref: VHOG:0000670
xref: XAO:0004139
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0004146
name: His-Purkinje system
def: "The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles" [GO:0003164]
synonym: "distal conduction system" EXACT [ZFA:0005071]
synonym: "His-Purkinji network" EXACT [ZFA:0005071]
synonym: "HPS" EXACT [ZFA:0005071]
xref: TAO:0005071
xref: ZFA:0005071
is_a: UBERON:0002350 ! conducting system of heart
[Term]
id: UBERON:0004147
name: cardiac Purkinje fiber
def: "The cardiac Purkinje fiber is part of the cardiac conduction system that receives signals from the bundle of His and innervates the ventricular cardiac muscle" [GO:0003165]
synonym: "heart Purkinje fiber" RELATED [BTO:0001735]
xref: BTO:0001735
xref: MESH:A.07.541.409.683
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0004146 ! His-Purkinje system
[Term]
id: UBERON:0004148
name: coronary vein
def: "Vein of heart" [GOC:Obol]
synonym: "cardiac vein" EXACT [FMA:12846]
synonym: "heart vein" EXACT [OBOL:automatic]
synonym: "vein of heart" EXACT [OBOL:automatic]
xref: EHDAA2:0004507
xref: FMA:12846
xref: galen:CoronaryVein
xref: ncithesaurus:Coronary_Vein
xref: SCTID:277726009
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003498 ! heart blood vessel
relationship: part_of UBERON:0000948
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0004149
name: ventriculo bulbo valve
def: "A heart valve located between the ventricle and bulbus arteriosus." [GO:0003173]
synonym: "bulboventricular valve" EXACT [ZFA:0001375]
xref: TAO:0001375
xref: ZFA:0001375
is_a: UBERON:0000946 ! cardial valve
relationship: develops_from UBERON:0002062 {source="ZFA"} ! endocardial cushion
[Term]
id: UBERON:0004150
name: coronary sinus valve
def: "Vestigial cardiac valve which is continuous with the valve of the inferior vena cava[FMA]." [GO:0003178]
comment: todo - development
synonym: "thebesian valve" EXACT []
synonym: "thebesius valve" EXACT []
synonym: "valve of coronary sinus" EXACT []
xref: FMA:9242
xref: SCTID:277723001
is_a: UBERON:0000946 ! cardial valve
[Term]
id: UBERON:0004151
name: cardiac chamber
def: "A cardiac chamber surrounds an enclosed cavity within the heart" [GO:0003205]
comment: generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus
synonym: "chamber of heart" EXACT []
synonym: "heart chamber" EXACT []
xref: FMA:7095
xref: OpenCyc:Mx4rmexpjPdAEduAAAAOpmP6tw
xref: SCTID:276456008
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0004152
name: bulbus arteriosus
def: "The bulbus arteriosus is an elastic heart chamber[GO]. Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches[ZFA]." [GO:0003232, PMID:15108157]
comment: Evolution notes: replaces conus arteriosis in cartilaginous fish
synonym: "truncus" EXACT [ZFA:0000173]
xref: EFO:0003505
xref: TAO:0000173
xref: ZFA:0000173
property_value: UBPROP:0000001 "A pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches. The bulbus arteriosus has three distinct layers. Hu et al. 2000.[TAO]" xsd:string
is_a: UBERON:0004151 ! cardiac chamber
relationship: develops_from UBERON:0007287 {evidence="definitional"} ! presumptive bulbus arteriosus
[Term]
id: UBERON:0004153
name: ventricular septum intermedium
def: "Endocardial cushions project into the atrial canal, and, meeting in the middle line, unite to form the septum intermedium which divides the canal into two channels, the future right and left atrioventricular orifices[Gray's via WP]." [GO:0003282, Wikipedia:Septum_intermedium]
synonym: "septum intermedium" EXACT []
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray467.png
xref: SCTID:361468003
is_a: UBERON:0002094 ! interventricular septum
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0002062 {source="Wikipedia"} ! endocardial cushion
[Term]
id: UBERON:0004154
name: septum primum
def: "In the developing heart, the cavity of the primitive atrium becomes subdivided into right and left chambers by a septum, the septum primum, which grows downward into the cavity. The increasingly smaller gap below it (before it fuses with the endocardial cushion) is known as the ostium primum. The septum primum eventually fuses with the endocardial cushion, closing the ostium primum off completely. Meanwhile, perforations appear in the superior part of the septum primum, forming the ostium secundum. This will eventually form part of the fossa ovalis.." [GO:0003284, Wikipedia:Septum_primum]
comment: AO notes: part_of IAS in EHDAA2
synonym: "interatrial septum primum" EXACT [EHDAA2:0001825]
xref: EHDAA2:0001825
xref: EHDAA:1900
xref: EMAPA:17013
xref: FMA:63909
xref: http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray465.png
xref: ncithesaurus:Septum_Primum
xref: SCTID:362017007
xref: VHOG:0000020
is_a: UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004155
name: septum secundum
def: "." [GO:0003285, Wikipedia:Septum_secondum]
comment: The septum secundum, semilunar in shape, grows downward from the upper wall of the atrium immediately to the right of the primary septum and ostium secundum. Shortly after birth it fuses with the septum primum, and consequently the foramen ovale is closed, but sometimes the fusion is incomplete and the upper part of the foramen remains patent. The limbus fossae ovalis denotes the free margin of the septum secundum.
synonym: "interatrial septum secundum" EXACT [EHDAA2:0001827]
xref: EHDAA2:0001827
xref: EHDAA:3406
xref: EMAPA:17864
xref: FMA:63910
xref: ncithesaurus:Septum_Secundum
xref: SCTID:308850005
xref: VHOG:0000021
is_a: UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004157
name: atrial septum primum
def: "." [GO:0003289]
is_a: UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004158
name: atrial septum secundum
def: "." [GO:0003290]
is_a: UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004159
name: atrial septum intermedium
def: "." [GO:0003291]
is_a: UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004160
name: proepicardium
def: "An outpouching of the septum transversum[GO]. An embryonic group of progenitor cells that forms near the venous pole of the heart and gives rise to the epicardium[Wiktionary]" [GO:0003342, http://en.wiktionary.org/wiki/proepicardium]
is_a: UBERON:0005256 ! trunk mesenchyme
relationship: part_of UBERON:0004161 ! septum transversum
[Term]
id: UBERON:0004161
name: septum transversum
def: "A thick plate of mesodermal tissue that occupies the space between the thoracic cavity and yolk stalk in the early embryo, forming a transverse partition partially separating the coelomic cavity into thoracic and abdominal portions. It gives rise to the central tendon of the diaphragm[OG]. The septum transversum is a portion of the trunk mesenchyme[GO]." [GO:0003343, VHOG:0000019, Wikipedia:Septum_transversum]
synonym: "transverse septum" EXACT [UBERON:cjm]
xref: EHDAA2:0001829
xref: EHDAA:736
xref: EMAPA:16318
xref: ncithesaurus:Septum_Transversum
xref: SCTID:308819008
xref: VHOG:0000019
is_a: UBERON:0005256 ! trunk mesenchyme
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0004162
name: pulmonary myocardium
def: "The pulmonary myocardium is the myocardial tissue present in the pulmonary vein" [GO:0003350]
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002036 ! striated muscle tissue
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002016 ! pulmonary vein
relationship: part_of UBERON:0002349 ! myocardium
[Term]
id: UBERON:0004163
name: anterior ectodermal midgut
def: "portions of the midgut that are derived from ectoderm." [GO:0007441]
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0004164
name: branchiomeric muscle
def: "The branchiomeric muscle is derived from cranial mesoderm and controls facial expression, pharyngeal and laryngeal function, operating the jaw. Branchiomeric muscles of mammals correspond to the gill musculature of fish[GO]." [GO:0014707, Wikipedia:Branchiomeric_musculature]
comment: Note: Kardong uses this term in a different way, including trapezius and mastoid groups
comment: TODO - gill musculature
synonym: "branchiomeric skeletal muscle" RELATED [GO:0014707]
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: develops_from UBERON:0010360 {source="PMID:21610022"} ! pharyngeal arch mesenchyme from head mesenchyme
[Term]
id: UBERON:0004166
name: superior reticular formation
def: "." [GO:0021729, GO_REF:0000021]
comment: check ZFA structures superior reticular formation medial column & tegmentum
is_a: UBERON:0002559 ! medullary reticular formation
is_a: UBERON:0002579 ! regional part of medullary reticular formation
relationship: part_of UBERON:0002559 {source="GO"} ! medullary reticular formation
[Term]
id: UBERON:0004167
name: orbitofrontal cortex
def: "The orbitofrontal cortex is a cerebral cortex region located in the frontal lobe" [GO:0021769]
comment: note that this is a gyrus in FMA
synonym: "fronto-orbital cortex" EXACT []
synonym: "orbital frontal cortex" EXACT [DHB:OFC, NIF_GrossAnatomy:birnlex_1049]
synonym: "orbito-frontal cortex" EXACT []
xref: EFO:0001990
xref: FMA:242003
xref: NIF_GrossAnatomy:birnlex_1049
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000349 ! limbic system
relationship: part_of UBERON:0001870 {source="GO"} ! frontal cortex
[Term]
id: UBERON:0004170
name: spinal cord ventral commissure
def: "the band of nerve fibers which cross the midline of the spinal cord ventral to the central canal and posterior grey commissure[MP]. The anterior (or ventral) white commissure, also known as the alba anterior medullae spinalis, is a bundle of nerve fibers which cross the midline of the spinal cord just anterior to the gray commissure. A N4 fibers and C fibers carrying pain sensation in the spinothalamic tract contribute to this commissure, as do fibers of the anterior corticospinal tract, which carry motor signals from the primary motor cortex[WP]." [GO:0021965, MP:0009695, Wikipedia:Anterior_white_commissure]
synonym: "anterior commissure" RELATED INCONSISTENT [MP:0009695]
synonym: "anterior white commissure" EXACT [MP:0009695]
synonym: "anterior white commissure of spinal cord" EXACT [FMA:77035]
synonym: "commissura alba anterior medullae spinalis, alba anterior medullae spinalis" RELATED LATIN [Wikipedia:Anterior_white_commissure]
synonym: "spinal cord anterior commissure" EXACT [MP:0009695]
synonym: "ventral spinal commissure" EXACT [MP:0009695]
synonym: "ventral white column" EXACT [MP:0009695]
synonym: "ventral white commissure of spinal cord" EXACT [FMA:77035]
synonym: "white commissure" RELATED [MP:0009695]
xref: FMA:77035
xref: http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray664.png
xref: ncithesaurus:White_Commissure
xref: SCTID:424149007
is_a: UBERON:0007838 {source="FMA"} ! spinal cord white commissure
[Term]
id: UBERON:0004171
name: trigeminothalamic tract
def: "the trigeminothalamic tract is one of the major routes of nociceptive and temperature signaling from the face" [GO:0021974]
xref: FMA:83852
is_a: UBERON:0001018 ! axon tract
[Term]
id: UBERON:0004172
name: pons reticulospinal tract
def: "axon tract that carries efferent (outgoing) action potentials from the cell body in the pons towards target cells in the spinal cord." [GO:0021975]
xref: SCTID:362404001
is_a: UBERON:0001018 ! axon tract
relationship: overlaps UBERON:0000988 ! pons
relationship: overlaps UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0004173
name: medulla reticulospinal tract
def: "axon tract that carries efferent (outgoing) action potentials from the cell body in the medulla towards target cells in the spinal cord[GO]." [GO:0021976]
synonym: "medullary reticulospinal tract" EXACT [FMA:73989]
xref: FMA:73989
is_a: UBERON:0001018 ! axon tract
relationship: overlaps UBERON:0001896 ! medulla oblongata
relationship: overlaps UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0004174
name: leg joint
def: "Joint in the leg. For example the knee, which separates the leg tibia and femur" [GO:0035111]
synonym: "joint of leg" EXACT [OBOL:automatic]
synonym: "joint of lower limb" RELATED [OBOL:automatic]
is_a: UBERON:0003840 ! hindlimb joint
relationship: part_of UBERON:0000978
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0004175
name: internal reproductive organ
def: "The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals" [GO:0035260]
subset: organ_slim
synonym: "internal genitalia" EXACT []
synonym: "internal reproductive organ" EXACT []
synonym: "internal sex organ" EXACT []
xref: FMA:45652
is_a: UBERON:0003133 ! reproductive organ
[Term]
id: UBERON:0004176
name: external reproductive organ
def: "The external genitalia are the outer sex organs, such as the penis or vulva in mammals" [GO:0035261]
subset: organ_slim
synonym: "external genitalia" EXACT []
synonym: "external reproductive organ" EXACT []
synonym: "external sex organ" EXACT []
xref: FMA:45643
xref: SCTID:362207005
is_a: UBERON:0003133 ! reproductive organ
[Term]
id: UBERON:0004177
name: hemopoietic organ
def: "Organ that is part of the hematopoietic system." [GOC:Obol]
comment: note that the FMA class 'lymphoid organ' is a general anatomical term
subset: organ_slim
synonym: "haematological system organ" EXACT [OBOL:automatic]
synonym: "haemopoietic system organ" EXACT [OBOL:automatic]
synonym: "hematopoeitic or lymphoid organ" NARROW []
synonym: "hematopoietic system organ" EXACT [OBOL:automatic]
synonym: "lymphoid organ" NARROW [BTO:0004605, FMA:7143]
synonym: "organ of haematological system" EXACT [OBOL:automatic]
synonym: "organ of haemopoietic system" EXACT [OBOL:automatic]
synonym: "organ of hematopoietic system" EXACT [OBOL:automatic]
synonym: "organ of organa haemopoietica" EXACT [OBOL:automatic]
synonym: "organa haemopoietica organ" EXACT [OBOL:automatic]
xref: BTO:0004605
xref: FMA:7143
xref: SCTID:361338006
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002390
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002390 ! hematopoietic system
[Term]
id: UBERON:0004178
name: aorta smooth muscle tissue
def: "A portion of smooth muscle tissue that is part of an aorta [Obol]." [OBOL:automatic]
synonym: "adult aorta involuntary muscle" EXACT [OBOL:automatic]
synonym: "adult aorta non-striated muscle" EXACT [OBOL:automatic]
synonym: "adult aorta smooth muscle" EXACT [OBOL:automatic]
synonym: "adult aorta smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "aorta involuntary muscle" EXACT [OBOL:automatic]
synonym: "aorta non-striated muscle" EXACT [OBOL:automatic]
synonym: "aorta smooth muscle" EXACT [OBOL:automatic]
synonym: "aortic smooth muscle" EXACT [BTO:0001685]
synonym: "dorsal aorta involuntary muscle" EXACT [OBOL:automatic]
synonym: "dorsal aorta non-striated muscle" EXACT [OBOL:automatic]
synonym: "dorsal aorta smooth muscle" EXACT [OBOL:automatic]
synonym: "dorsal aorta smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of adult aorta" EXACT [OBOL:automatic]
synonym: "involuntary muscle of aorta" EXACT [OBOL:automatic]
synonym: "involuntary muscle of dorsal aorta" EXACT [OBOL:automatic]
synonym: "involuntary muscle of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "non-striated muscle of adult aorta" EXACT [OBOL:automatic]
synonym: "non-striated muscle of aorta" EXACT [OBOL:automatic]
synonym: "non-striated muscle of dorsal aorta" EXACT [OBOL:automatic]
synonym: "non-striated muscle of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "smooth muscle of adult aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle of aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle of dorsal aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of adult aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of dorsal aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree involuntary muscle" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree non-striated muscle" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree smooth muscle" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree smooth muscle tissue" EXACT [OBOL:automatic]
xref: BTO:0001685
xref: EFO:0002775
xref: MA:0000702
xref: ncithesaurus:Aorta_Smooth_Muscle_Tissue
is_a: UBERON:0002111 ! artery smooth muscle tissue
relationship: part_of UBERON:0000947
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0004179
name: prostate glandular acinus
def: "A saclike structure of the prostate gland, comprised of at least three cell layers: an innermost layer of secretory columnar luminal epithelium, a middle layer of squamous basal epithelium that also contains neuroendocrine cells, transit amplifying cells, and stem cells, and an outer layer of smooth muscle intermixed with other stromal cells" [GO:0060525, PMID:18977204]
comment: Concurrent with branching morphogenesis, the solid cords of epithelium formed by budding arborize and differentiate postnatally into glandular acin. The basic prostate architecture is established by puberty and acquires secretory function thereafter[PMID:18977204]
synonym: "prostatic acinus" EXACT [FMA:66808]
synonym: "prostatic follicle" EXACT [FMA:66808]
xref: FMA:66808
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0009842 {source="FMA"} ! acinus
relationship: develops_from UBERON:0009843 {source="PMID:18977204"} ! prostate epithelial cord
relationship: part_of UBERON:0000428 {source="GO"} ! prostate epithelium
relationship: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0004180
name: mammary gland fat
def: "The mammary fat is an adipose structure in the gland that is invaded by the mammary ducts" [GO:0060611]
synonym: "adipose tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "adipose tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "adipose tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "adipose tissue of mammary gland" EXACT [OBOL:automatic]
synonym: "fat tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "fat tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "fat tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "fat tissue of mammary gland" EXACT [OBOL:automatic]
synonym: "fatty tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "fatty tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "fatty tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "fatty tissue of mammary gland" EXACT [OBOL:automatic]
synonym: "lactiferous gland adipose tissue" EXACT [OBOL:automatic]
synonym: "lactiferous gland fat tissue" EXACT [OBOL:automatic]
synonym: "lactiferous gland fatty tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast adipose tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast fat tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast fatty tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland adipose tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland fat tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland fatty tissue" EXACT [OBOL:automatic]
synonym: "mammary gland adipose tissue" EXACT [OBOL:automatic]
synonym: "mammary gland fat tissue" EXACT [OBOL:automatic]
synonym: "mammary gland fatty tissue" EXACT [OBOL:automatic]
xref: MA:0002911
is_a: UBERON:0001013 ! adipose tissue
is_a: UBERON:0003584 ! mammary gland connective tissue
relationship: part_of UBERON:0001911
intersection_of: UBERON:0001013 ! adipose tissue
intersection_of: part_of UBERON:0001911 ! mammary gland
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0004182
name: mammary gland cord
def: "Mammary gland cords form when the mammary gland bud invades the mammary fat" [GO:0060652]
comment: TODO - mammary placode
is_a: UBERON:0003244 ! epithelium of mammary gland
is_a: UBERON:0005154 ! epithelial cord
relationship: part_of UBERON:0001765
intersection_of: UBERON:0005154 ! epithelial cord
intersection_of: part_of UBERON:0001765 ! mammary duct
relationship: part_of UBERON:0001765 ! mammary duct
[Term]
id: UBERON:0004183
name: labyrinthine layer blood vessel
def: "The embryonic vessels grow through the layer to come in close contact with the maternal blood supply" [GO:0060716]
synonym: "blood vessel of labyrinthine layer" EXACT [OBOL:automatic]
synonym: "blood vessel of labyrinthine layer of placenta" EXACT [OBOL:automatic]
synonym: "blood vessel of placenta labyrinth" EXACT [OBOL:automatic]
synonym: "labyrinthine layer of placenta blood vessel" EXACT [OBOL:automatic]
synonym: "placenta labyrinth blood vessel" EXACT [OBOL:automatic]
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001981 ! blood vessel
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010303 ! extraembryonic epithelium
relationship: part_of UBERON:0003946
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0003946 ! placenta labyrinth
relationship: part_of UBERON:0003946 ! placenta labyrinth
[Term]
id: UBERON:0004184
name: prostate gland stroma
alt_id: UBERON:0005084
def: "The prostate gland stroma is made up of the mesenchymal or fibroblast cells of the prostate gland" [GO:0060741]
comment: TODO - check also FMA Stroma of glandular part of prostate
synonym: "prostate stroma" EXACT [OBOL:automatic]
synonym: "prostatic stroma" EXACT [FMA:45719]
synonym: "stroma of glandular part of prostate" NARROW [FMA:74349, OBOL:automatic]
synonym: "stroma of prostate" EXACT [OBOL:automatic]
synonym: "stroma of prostate gland" EXACT [OBOL:automatic]
xref: FMA:45719
xref: MA:0002912
xref: ncithesaurus:Prostatic_Stroma
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0002367
intersection_of: UBERON:0003891 ! stroma
intersection_of: part_of UBERON:0002367 ! prostate gland
relationship: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0004185
name: endodermal gut
def: "A portions of the gut that is derived from endoderm." [GO:0061031]
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000925
relationship: part_of UBERON:0001555
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: develops_from UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001555 ! digestive tract
relationship: develops_from UBERON:0000925 ! endoderm
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0004186
name: olfactory bulb mitral cell layer
def: "The mitral cell layer is composed of pyramidal neurons whose cell bodies are located between the granule cell layer and the plexiform layer" [GO:0061034]
comment: note that NIF divides this into main and accessory
synonym: "mitral cell body layer" EXACT [NIF_GrossAnatomy:nlx_anat_100201]
synonym: "mitral cell layer" EXACT [BTO:0001108]
synonym: "olfactory bulb main mitral cell body layer" RELATED [NIF_GrossAnatomy:nlx_anat_100201]
xref: BTO:0001108
xref: MA:0000973
xref: NIF_GrossAnatomy:nlx_anat_100201
is_a: UBERON:0004001 ! olfactory bulb layer
relationship: part_of UBERON:0002264 ! olfactory bulb
[Term]
id: UBERON:0004187
name: Harderian gland
def: "The Harderian gland is an anterior orbital structure usually associated with the nictitating membrane, and produces and secretes a variety of substances to the eye, depending upon the species[GO]. An accessory lacrimal gland on the inner side of the orbit in reptiles and birds but usually degenerate in mammals[BTO]." [GO:0070384]
subset: organ_slim
synonym: "Harder's gland" RELATED []
xref: BTO:0000557
xref: EMAPA:19153
xref: GAID:1219
xref: MA:0001247
xref: MESH:A.13.445
xref: ncithesaurus:Harderian_Gland
xref: SCTID:41474005
is_a: UBERON:0003484 ! eye sebaceous gland
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0004188
name: glomerular epithelium
def: "The glomerular epithelium is an epithelial tissue that covers the outer surfaces of the glomerulus. The glomerular epithelium consists of both parietal and visceral epithelium. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros." [GO:0072010]
comment: TODO - check - GO says outer, BTO says inner. Make this a superclass
synonym: "epithelium of glomerulus" EXACT []
synonym: "epithelium of kidney glomerulus" EXACT []
synonym: "epithelium of renal glomerulus" EXACT []
synonym: "glomerular epithelial cell" RELATED [BTO:0001515]
synonym: "kidney glomerular epithelium" EXACT [MA:0002847]
xref: BTO:0001515
xref: MA:0002847
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004211 ! nephron epithelium
relationship: part_of UBERON:0000074
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000074 ! renal glomerulus
relationship: part_of UBERON:0000074 ! renal glomerulus
[Term]
id: UBERON:0004189
name: glomerular endothelium
def: "The glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus" [GO:0072011]
synonym: "endothelium of renal glomerulus" EXACT [OBOL:automatic]
synonym: "renal glomerulus endothelium" EXACT [OBOL:automatic]
xref: BTO:0004631
is_a: UBERON:0004188 ! glomerular epithelium
is_a: UBERON:0004852 ! cardiovascular system endothelium
relationship: part_of UBERON:0000074
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0000074 ! renal glomerulus
relationship: part_of UBERON:0000074 ! renal glomerulus
relationship: part_of UBERON:0004190 ! glomerulus vasculature
[Term]
id: UBERON:0004190
name: glomerulus vasculature
def: "The glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the glomerulus" [GO:0072012]
synonym: "renal glomerulus vascular network" EXACT [OBOL:automatic]
synonym: "renal glomerulus vasculature" EXACT [OBOL:automatic]
synonym: "vascular network of renal glomerulus" EXACT [OBOL:automatic]
synonym: "vasculature of renal glomerulus" EXACT [OBOL:automatic]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006544 ! kidney vasculature
relationship: part_of UBERON:0000074
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000074 ! renal glomerulus
relationship: part_of UBERON:0000074 ! renal glomerulus
[Term]
id: UBERON:0004193
name: loop of Henle ascending limb thin segment
def: "A sub-portion of the loop of Henle in the nephron of the kidney that is permeable to ions but not to water" [GO:0072021, Wikipedia:Thin_ascending_limb_of_loop_of_Henle]
comment: check relationship to distal tubule
synonym: "ascending limb thin segment of loop of Henle" EXACT []
synonym: "ascending thin limb" EXACT [FMA:17720]
synonym: "pars ascendens (tubulus attenuatus)" EXACT [FMA:17720]
synonym: "thin ascending limb" EXACT [EMAPA:28328]
synonym: "thin ascending limb of loop of Henle" EXACT []
xref: EMAPA:28328
xref: EMAPA:28361
xref: FMA:17720
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0001678
is_a: UBERON:0007685 ! region of nephron tubule
is_a: UBERON:0008408 ! distal tubular epithelium
relationship: part_of UBERON:0003455 ! inner renal medulla loop of henle
relationship: part_of UBERON:0005164 ! ascending limb of loop of Henle
[Term]
id: UBERON:0004194
name: long nephron
def: "Long nephrons are associated with juxtamedullary glomeruli and extend to the inner medulla" [GO:0072029]
synonym: "juxtamedullary nephron" RELATED [GO:0072029, http://sourceforge.net/tracker/?func=detail&aid=3031362&group_id=36855&atid=440764]
xref: ncithesaurus:Juxtamedullary_Nephron
is_a: UBERON:0001285 ! nephron
[Term]
id: UBERON:0004195
name: short nephron
def: "Short nephrons are associated with mid-cortical glomeruli, and have no short ascending limb, so the limb is situated in the outer medulla" [GO:0072030]
is_a: UBERON:0001285 ! nephron
[Term]
id: UBERON:0004196
name: proximal convoluted tubule segment 1
alt_id: UBERON:0006432
def: "The S1 portion is the initial portion of the proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]." [GO:0072031, http://sourceforge.net/tracker/?func=detail&atid=440764&aid=3298740&group_id=36855]
synonym: "S1" BROAD [GO:0072031]
synonym: "S1 portion of renal tubule" EXACT []
synonym: "S1 portion of tubule" EXACT []
synonym: "segment 1 of proximal tubule" EXACT [EMAPA:29657]
xref: EMAPA:29657
xref: MA:0002612
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001287 {source="GO"} ! proximal convoluted tubule
[Term]
id: UBERON:0004197
name: proximal convoluted tubule segment 2
alt_id: UBERON:0006433
def: "The S2 portion of the tubule is involved in reabsorption of water and sodium chloride[GO]." [GO:0072032]
synonym: "S2" BROAD [GO:0072032]
synonym: "S2 portion of renal tubule" EXACT []
synonym: "S2 portion of tubule" EXACT []
synonym: "segment 2 of proximal tubule" EXACT [EMAPA:29659]
xref: EMAPA:29659
xref: MA:0002613
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001287 {source="GO"} ! proximal convoluted tubule
[Term]
id: UBERON:0004198
name: comma-shaped body
def: "The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron" [GO:0072049]
xref: EMAPA:27681
xref: EMAPA:27835
xref: ZFA:0005588
is_a: UBERON:0001231 ! nephron tubule
is_a: UBERON:0010532 {source="cjm"} ! primitive nephron
relationship: develops_from UBERON:0004209 {source="ZFA"} ! renal vesicle
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0004199
name: S-shaped body
def: "The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron" [GO:0072050]
comment: TODO
synonym: "stage II nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html]
xref: EMAPA:27756
xref: EMAPA:27853
xref: ZFA:0005589
is_a: UBERON:0010532 {source="cjm"} ! primitive nephron
relationship: develops_from UBERON:0004198 {source="GO"} ! comma-shaped body
[Term]
id: UBERON:0004200
name: kidney pyramid
alt_id: UBERON:0002449
alt_id: UBERON:0005098
def: "Kidney pyramids are the conical masses that constitute the renal medulla in a multi-lobed mammalian kidney; they contain the loops of Henle and the medullary collecting ducts[GO]. One of a number of pyramidal masses seen on longitudinal section of the kidney; collectively, they constitute the renal medulla, and contain part of the secreting tubules and the collecting tubules[BTO]. Renal pyramids (or malpighian pyramids) are cone-shaped tissues of the kidney. The renal medulla is made up of 8 to 18 of these conical subdivisions. The broad base of each pyramid faces the renal cortex, and its apex, or papilla, points internally. The pyramids appear striped because they are formed by straight parallel segments of nephrons. [WP,unvetted]." [BTO:0003926, GO:0072056, Wikipedia:Renal_pyramids]
comment: not the same as FMA:50609 Pyramid (which is a volume / dimensional entity)
synonym: "malphigian pyramid" RELATED [BTO:0003926]
synonym: "malpighian pyramid" EXACT [Wikipedia:Renal_pyramids]
synonym: "medullary pyramid" RELATED []
synonym: "pyramid" BROAD [GO:0072056]
synonym: "pyramid of Malphigi" RELATED [ncithesaurus:Pyramid_of_Malpighi]
synonym: "pyramides renales" RELATED LATIN [Wikipedia:Renal_pyramids]
synonym: "pyramis renalis" RELATED [BTO:0003926]
synonym: "renal pyramid" EXACT [Wikipedia:Renal_pyramids]
xref: BTO:0003926
xref: FMA:258870
xref: http://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png
xref: MA:0001654
xref: ncithesaurus:Pyramid_of_Malpighi
xref: ncithesaurus:Renal_Pyramid
xref: SCTID:361328001
is_a: UBERON:0006554 ! urinary system structure
disjoint_from: UBERON:0005159 ! pyramid of medulla oblongata
relationship: part_of UBERON:0000362 ! renal medulla
[Term]
id: UBERON:0004201
name: kidney outer medulla inner stripe
def: "The inner stripe is a deep, centrally located portion of the renal outer medulla and is traversed by thick and thin portions of nephron tubules" [GO:0072057]
synonym: "inner stripe" EXACT [GO:0072057]
synonym: "inner stripe of medulla of kidney" EXACT [FMA:76663]
synonym: "inner stripe of outer medulla" EXACT [EMAPA:29675]
synonym: "inner stripe of renal medulla" EXACT [FMA:76663]
synonym: "outer medulla inner stripe" EXACT [MA:0002626]
synonym: "stria interna medullae renalis" EXACT [FMA:76663, FMA:TA]
xref: EMAPA:29675
xref: FMA:76663
xref: MA:0002626
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001293 ! outer medulla of kidney
[Term]
id: UBERON:0004202
name: kidney outer medulla outer stripe
def: "The outer stripe is the region of the kidney that lies distal to the line of termination of the straight renal tubules" [GO:0072058]
synonym: "outer medulla outer stripe" EXACT [MA:0002629]
synonym: "outer stripe" EXACT [GO:0072058]
synonym: "outer stripe of medulla of kidney" EXACT [FMA:76662]
synonym: "outer stripe of outer medulla" EXACT [EMAPA:29663]
synonym: "outer stripe of renal medulla" EXACT [FMA:76662]
synonym: "stria externa medullae renalis" EXACT [FMA:76662, FMA:TA]
xref: EMAPA:29663
xref: FMA:76662
xref: MA:0002629
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001293 ! outer medulla of kidney
[Term]
id: UBERON:0004203
name: cortical collecting duct
def: "The cortical collecting duct is the portion of the collecting duct that resides in the renal cortex" [GO:0072059]
xref: BTO:0002643
xref: EMAPA:28130
is_a: UBERON:0006553 ! renal duct
relationship: part_of UBERON:0001225
relationship: part_of UBERON:0001232
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001225 ! cortex of kidney
intersection_of: part_of UBERON:0001232 ! collecting duct of renal tubule
relationship: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001232 ! collecting duct of renal tubule
[Term]
id: UBERON:0004204
name: outer medullary collecting duct
def: "The outer medullary collecting duct is the portion of the collecting duct that lies in the renal outer medulla" [GO:0072060]
xref: EMAPA:28346
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001232 ! collecting duct of renal tubule
[Term]
id: UBERON:0004205
name: inner medullary collecting duct
def: "The inner medullary collecting duct is the portion of the collecting duct that lies in the renal inner medulla" [GO:0072061]
xref: BTO:0004544
xref: EMAPA:28370
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001232 ! collecting duct of renal tubule
[Term]
id: UBERON:0004206
name: long descending thin limb bend
def: "The long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment" [GO:0072065]
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001289 ! descending limb of loop of Henle
[Term]
id: UBERON:0004207
name: prebend segment
def: "The prebend segment is a part of the descending thin limb that lies before the bend and exhibits robust sodium chloride reabsorption" [GO:0072066]
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001289 ! descending limb of loop of Henle
relationship: part_of UBERON:0005096 {source="GO"} ! descending thin limb
[Term]
id: UBERON:0004208
name: nephrogenic mesenchyme
def: "Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron" [GO:0072076]
comment: The detailed events associated with the differentiation of the nephrogenic mesenchyme are somewhat complex. It has been suggested that each terminal branch of the ureteric bud stimulates the associated cap mesenchyme tissue to form a renal vesicle (the most primitive stage of nephron development: a stage I nephron). This then elongates, becomes a comma-shaped and then an S-shaped body (stage II nephron), and makes contact with and fuses with the distal component of the ureteric bud. The latter then forms the collecting duct. One fold of the S-shaped body gives rise to Bowman’s capsule (also termed the glomerular capsule). Soon afterwards, endothelial cells invade to make a capillary knot-like outgrowth, the glomerular tuft, which goes on to form the glomerulus. The inner epithelial layer of the Bowman’s capsule (also called the visceral epithelium, or podocyte layer because it consists of podocytes) is closely apposed to the endothelial glomerulus. Together, the Bowman’s capsule and the glomerulus comprise the definitive renal corpuscle. The rest of the nephron elongates to form components of the proximal tubule, the loop of Henle and the distal tubule. The distal pole of the developing nephron connects to the ureteric bud that induced it at an early stage of nephron/ collecting duct development, before differentiation of the proximal tubule, the loop of Henle and the distal tubule are complete. This connection allows the excretory products produced by the kidney to be removed and subsequently transferred, via the ureter, into the bladder where they are stored until it is appropriate to empty the bladder. [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron]
synonym: "mesenchyme of nephron" EXACT [OBOL:automatic]
synonym: "nephron mesenchyme" EXACT [OBOL:automatic]
is_a: UBERON:0003104 ! mesenchyme
relationship: develops_into UBERON:0001285
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_into UBERON:0001285 ! nephron
relationship: develops_into UBERON:0001285 ! nephron
[Term]
id: UBERON:0004209
name: renal vesicle
def: "The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells. " [GO:0072077]
comment: Editor notes: note that this class includes both metanephric and mesonephric vesicles - ZFA and EHDAA2 associations are placed with these classes. TODO - make a more specific develops_from relationship - see UBERON:0005107
synonym: "stage I nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html, ZFA:0005586]
is_a: UBERON:0004211 ! nephron epithelium
is_a: UBERON:0007503 {source="EHDAA2"} ! epithelial vesicle
relationship: develops_from UBERON:0004208 ! nephrogenic mesenchyme
relationship: induced_by UBERON:0000084 ! ureteric bud
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0004211
name: nephron epithelium
def: "The nephron epithelium is a tissue that covers the surface of a nephron" [GO:0072088]
synonym: "epithelial tissue of nephron" EXACT [OBOL:automatic]
synonym: "epithelium of nephron" EXACT [OBOL:automatic]
synonym: "nephron epithelial tissue" EXACT [OBOL:automatic]
is_a: UBERON:0004819 ! kidney epithelium
relationship: part_of UBERON:0001285
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001285 ! nephron
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0004212
name: glomerular capillary
def: "A capillary that is part of a renal glomerulus [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "blood capillary of renal glomerulus" EXACT [OBOL:automatic]
synonym: "capillary of renal glomerulus" EXACT [OBOL:automatic]
synonym: "capillary vessel of renal glomerulus" EXACT [OBOL:automatic]
synonym: "glomerular capillary system" RELATED [MA:0002587]
synonym: "renal glomerulus blood capillary" EXACT [OBOL:automatic]
synonym: "renal glomerulus capillary" EXACT [OBOL:automatic]
synonym: "renal glomerulus capillary vessel" EXACT [OBOL:automatic]
xref: EMAPA:28245
xref: MA:0002587
xref: ncithesaurus:Glomerular_Capillary
xref: TAO:0005284
xref: ZFA:0005284
property_value: UBPROP:0000001 "Capillary that is part of the renal glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level.[TAO]" xsd:string
is_a: UBERON:0001231 ! nephron tubule
is_a: UBERON:0003527 ! kidney capillary
is_a: UBERON:0004188 ! glomerular epithelium
relationship: part_of UBERON:0000074
intersection_of: UBERON:0001982 ! capillary
intersection_of: part_of UBERON:0000074 ! renal glomerulus
relationship: part_of UBERON:0000074 ! renal glomerulus
[Term]
id: UBERON:0004214
name: upper leg nerve
def: "A nerve that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
synonym: "hind limb stylopod nerve" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod nerve" EXACT [OBOL:automatic]
synonym: "inferior member stylopod nerve" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod nerve" EXACT [OBOL:automatic]
synonym: "nerve of hind limb stylopod" EXACT [OBOL:automatic]
synonym: "nerve of hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "nerve of inferior member stylopod" EXACT [OBOL:automatic]
synonym: "nerve of lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "nerve of Proximal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of lower limb" EXACT [OBOL:automatic]
synonym: "nerve of thigh" EXACT [OBOL:automatic]
synonym: "nerve of upper leg" EXACT [OBOL:automatic]
synonym: "Proximal segment of free lower limb nerve" EXACT [OBOL:automatic]
synonym: "stylopod of hind limb nerve" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb nerve" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member nerve" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity nerve" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb nerve" EXACT [OBOL:automatic]
synonym: "thigh nerve" EXACT [OBOL:automatic]
xref: MA:0000685
is_a: UBERON:0003431 ! leg nerve
relationship: part_of UBERON:0000376
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0004215
name: back nerve
def: "A nerve that is part of a back [Obol]." [OBOL:automatic]
synonym: "nerve of back" EXACT [OBOL:automatic]
xref: MA:0000497
is_a: UBERON:0001021 ! nerve
relationship: part_of UBERON:0001137
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001137 ! dorsum
relationship: part_of UBERON:0001137 ! dorsum
[Term]
id: UBERON:0004216
name: lower arm nerve
def: "A nerve that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region nerve" EXACT [OBOL:automatic]
synonym: "arm middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "arm zeugopod nerve" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod nerve" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb nerve" EXACT [OBOL:automatic]
synonym: "lower segment of arm nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
synonym: "nerve of antebrachial region" EXACT [OBOL:automatic]
synonym: "nerve of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of arm zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of lower arm" EXACT [OBOL:automatic]
synonym: "nerve of lower segment of arm" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of arm nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
xref: MA:0000601
is_a: UBERON:0003433 ! arm nerve
relationship: part_of UBERON:0002386
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0004217
name: upper arm nerve
def: "A nerve that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
synonym: "arm stylopod nerve" EXACT [OBOL:automatic]
synonym: "brachial region stylopod nerve" EXACT [OBOL:automatic]
synonym: "nerve of arm stylopod" EXACT [OBOL:automatic]
synonym: "nerve of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "nerve of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of arm" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of upper arm" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod nerve" EXACT [OBOL:automatic]
synonym: "stylopod of arm nerve" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region nerve" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
xref: MA:0000607
is_a: UBERON:0003433 ! arm nerve
relationship: part_of UBERON:0003822
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
relationship: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0004218
name: lower leg nerve
def: "A nerve that is part of a lower leg [Obol]." [OBOL:automatic]
synonym: "hind limb middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod nerve" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod nerve" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod nerve" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb nerve" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity nerve" EXACT [OBOL:automatic]
synonym: "nerve of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "nerve of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of lower leg" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of leg nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity nerve" EXACT [OBOL:automatic]
xref: MA:0000679
is_a: UBERON:0003431 ! leg nerve
relationship: part_of UBERON:0003823
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0004219
name: urethra smooth muscle
def: "A portion of smooth muscle tissue that is part of a urethra [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of urethra" EXACT [OBOL:automatic]
synonym: "non-striated muscle of urethra" EXACT [OBOL:automatic]
synonym: "smooth muscle of urethra" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of urethra" EXACT [OBOL:automatic]
synonym: "urethra involuntary muscle" EXACT [OBOL:automatic]
synonym: "urethra non-striated muscle" EXACT [OBOL:automatic]
synonym: "urethra smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "urethral smooth muscle" RELATED [MA:0001691]
xref: MA:0001691
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000057
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0004220
name: large intestine smooth muscle
def: "A portion of smooth muscle tissue that is part of a large intestine [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of large intestine" EXACT [OBOL:automatic]
synonym: "large intestine involuntary muscle" EXACT [OBOL:automatic]
synonym: "large intestine non-striated muscle" EXACT [OBOL:automatic]
synonym: "large intestine smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of large intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle of large intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of large intestine" EXACT [OBOL:automatic]
xref: MA:0001547
is_a: UBERON:0004221 ! intestine smooth muscle
relationship: part_of UBERON:0000059
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 ! wall of large intestine
[Term]
id: UBERON:0004221
name: intestine smooth muscle
def: "A portion of smooth muscle tissue that is part of a intestine [Obol]." [OBOL:automatic]
synonym: "bowel involuntary muscle" EXACT [OBOL:automatic]
synonym: "bowel non-striated muscle" EXACT [OBOL:automatic]
synonym: "bowel smooth muscle" EXACT [OBOL:automatic]
synonym: "bowel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "intestine involuntary muscle" EXACT [OBOL:automatic]
synonym: "intestine non-striated muscle" EXACT [OBOL:automatic]
synonym: "intestine smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bowel" EXACT [OBOL:automatic]
synonym: "involuntary muscle of intestine" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bowel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle of bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle of intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of intestine" EXACT [OBOL:automatic]
xref: BTO:0000643
xref: MA:0001539
xref: ncithesaurus:Intestinal_Smooth_Muscle_Tissue
xref: WBbt:0005796
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004226 ! gastrointestinal system smooth muscle
relationship: part_of UBERON:0000160
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001262 ! wall of intestine
[Term]
id: UBERON:0004222
name: stomach smooth muscle
def: "A portion of smooth muscle tissue that is part of a stomach [Obol]." [OBOL:automatic]
synonym: "gastric muscle" RELATED [BTO:0001818]
synonym: "gastric smooth muscle" RELATED [MA:0001627]
synonym: "involuntary muscle of stomach" EXACT [OBOL:automatic]
synonym: "involuntary muscle of ventriculus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of stomach" EXACT [OBOL:automatic]
synonym: "non-striated muscle of ventriculus" EXACT [OBOL:automatic]
synonym: "smooth muscle of stomach" EXACT [OBOL:automatic]
synonym: "smooth muscle of ventriculus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of stomach" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of ventriculus" EXACT [OBOL:automatic]
synonym: "stomach involuntary muscle" EXACT [OBOL:automatic]
synonym: "stomach muscle" RELATED [BTO:0001818]
synonym: "stomach non-striated muscle" EXACT [OBOL:automatic]
synonym: "stomach smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "ventriculus involuntary muscle" EXACT [OBOL:automatic]
synonym: "ventriculus non-striated muscle" EXACT [OBOL:automatic]
synonym: "ventriculus smooth muscle" EXACT [OBOL:automatic]
synonym: "ventriculus smooth muscle tissue" EXACT [OBOL:automatic]
xref: BTO:0001818
xref: MA:0001627
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004226 ! gastrointestinal system smooth muscle
relationship: part_of UBERON:0000945
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001167 ! wall of stomach
[Term]
id: UBERON:0004223
name: vagina smooth muscle
def: "A portion of smooth muscle tissue that is part of a vagina [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of vagina" EXACT [OBOL:automatic]
synonym: "non-striated muscle of vagina" EXACT [OBOL:automatic]
synonym: "smooth muscle of vagina" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of vagina" EXACT [OBOL:automatic]
synonym: "vagina involuntary muscle" EXACT [OBOL:automatic]
synonym: "vagina non-striated muscle" EXACT [OBOL:automatic]
synonym: "vagina smooth muscle" RELATED [BTO:0004999]
synonym: "vagina smooth muscle tissue" EXACT [OBOL:automatic]
xref: BTO:0004999
xref: MA:0001733
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0006652 ! muscular layer of vagina
relationship: part_of UBERON:0000996
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0004224
name: vas deferens smooth muscle
def: "A portion of smooth muscle tissue that is part of a vas deferens [Obol]." [OBOL:automatic]
comment: todo - check MA and FMA classes mean the same thing
synonym: "muscle layer of deferent duct" EXACT [FMA:19239]
synonym: "muscle layer of ductus deferens" EXACT [FMA:19239]
synonym: "muscle layer of vas deferens" EXACT [FMA:19239]
synonym: "muscular coat of ductus deferens" EXACT [FMA:19239]
synonym: "muscular layer of ductus deferens" EXACT [FMA:19239]
synonym: "muscularis of vas deferens" EXACT [FMA:19239]
synonym: "tunica muscularis (Ductus deferens)" EXACT [FMA:19239]
synonym: "tunica muscularis ductus deferentis" EXACT [FMA:19239, FMA:TA]
xref: EMAPA:29270
xref: FMA:19239
xref: MA:0001750
xref: SCTID:299705008
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0001000
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0001000 ! vas deferens
relationship: part_of UBERON:0001000 ! vas deferens
[Term]
id: UBERON:0004225
name: respiratory system smooth muscle
def: "A portion of smooth muscle tissue that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "airway smooth muscle" RELATED [BTO:0001660]
synonym: "apparatus respiratorius involuntary muscle" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius non-striated muscle" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius smooth muscle" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "involuntary muscle of respiratory system" EXACT [OBOL:automatic]
synonym: "non-striated muscle of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "non-striated muscle of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory smooth muscle" EXACT [BTO:0001660]
synonym: "respiratory system involuntary muscle" EXACT [OBOL:automatic]
synonym: "respiratory system non-striated muscle" EXACT [OBOL:automatic]
synonym: "respiratory system smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "smooth muscle of respiratory system" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of respiratory system" EXACT [OBOL:automatic]
xref: BTO:0001660
xref: MA:0001830
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004226
name: gastrointestinal system smooth muscle
def: "A portion of smooth muscle tissue that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system involuntary muscle" EXACT [OBOL:automatic]
synonym: "digestive system non-striated muscle" EXACT [OBOL:automatic]
synonym: "digestive system smooth muscle" EXACT [OBOL:automatic]
synonym: "digestive system smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "gastrointestinal system involuntary muscle" EXACT [OBOL:automatic]
synonym: "gastrointestinal system non-striated muscle" EXACT [OBOL:automatic]
synonym: "gastrointestinal system smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of digestive system" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "non-striated muscle of digestive system" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "smooth muscle of digestive system" EXACT [OBOL:automatic]
synonym: "smooth muscle of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of digestive system" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001523
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0005409
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0005409 ! gastrointestinal system
relationship: part_of UBERON:0005409 ! gastrointestinal system
[Term]
id: UBERON:0004227
name: kidney pelvis smooth muscle
def: "A portion of smooth muscle tissue that is part of a renal pelvis [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of kidney pelvis" EXACT [OBOL:automatic]
synonym: "involuntary muscle of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "involuntary muscle of renal pelvis" EXACT [OBOL:automatic]
synonym: "kidney pelvis involuntary muscle" EXACT [OBOL:automatic]
synonym: "kidney pelvis non-striated muscle" EXACT [OBOL:automatic]
synonym: "kidney pelvis smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of kidney pelvis" EXACT [OBOL:automatic]
synonym: "non-striated muscle of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "non-striated muscle of renal pelvis" EXACT [OBOL:automatic]
synonym: "pelvis of ureter involuntary muscle" EXACT [OBOL:automatic]
synonym: "pelvis of ureter non-striated muscle" EXACT [OBOL:automatic]
synonym: "pelvis of ureter smooth muscle" EXACT [OBOL:automatic]
synonym: "pelvis of ureter smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "renal pelvis involuntary muscle" EXACT [OBOL:automatic]
synonym: "renal pelvis non-striated muscle" EXACT [OBOL:automatic]
synonym: "renal pelvis smooth muscle" EXACT [OBOL:automatic]
synonym: "renal pelvis smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of kidney pelvis" EXACT [OBOL:automatic]
synonym: "smooth muscle of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "smooth muscle of renal pelvis" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of kidney pelvis" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of renal pelvis" EXACT [OBOL:automatic]
xref: FMA:262022
xref: MA:0002631
is_a: UBERON:0005321 ! mesonephric smooth muscle tissue
is_a: UBERON:0009919 ! ureter smooth muscle
relationship: part_of UBERON:0001224
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001224 ! renal pelvis
relationship: part_of UBERON:0001224 ! renal pelvis
[Term]
id: UBERON:0004228
name: urinary bladder smooth muscle
def: "A portion of smooth muscle tissue that is part of a urinary bladder [Obol]." [OBOL:automatic]
synonym: "bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of urinary bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of urinary bladder" EXACT [OBOL:automatic]
synonym: "urinary bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder smooth muscle tissue" EXACT [OBOL:automatic]
xref: BTO:0001849
xref: MA:0001697
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001255
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0004229
name: urinary bladder trigone smooth muscle
def: "A portion of smooth muscle tissue that is part of a trigone of urinary bladder [Obol]." [OBOL:automatic]
synonym: "deep trigone involuntary muscle" EXACT [OBOL:automatic]
synonym: "deep trigone non-striated muscle" EXACT [OBOL:automatic]
synonym: "deep trigone smooth muscle" EXACT [OBOL:automatic]
synonym: "deep trigone smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of deep trigone" EXACT [OBOL:automatic]
synonym: "involuntary muscle of Lieutaud's trigone" EXACT [OBOL:automatic]
synonym: "involuntary muscle of trigone of bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "involuntary muscle of vesical trigone" EXACT [OBOL:automatic]
synonym: "Lieutaud's trigone involuntary muscle" EXACT [OBOL:automatic]
synonym: "Lieutaud's trigone non-striated muscle" EXACT [OBOL:automatic]
synonym: "Lieutaud's trigone smooth muscle" EXACT [OBOL:automatic]
synonym: "Lieutaud's trigone smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of deep trigone" EXACT [OBOL:automatic]
synonym: "non-striated muscle of Lieutaud's trigone" EXACT [OBOL:automatic]
synonym: "non-striated muscle of trigone of bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "non-striated muscle of vesical trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle of deep trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle of Lieutaud's trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle of trigone of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle of vesical trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of deep trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of Lieutaud's trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of trigone of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of vesical trigone" EXACT [OBOL:automatic]
synonym: "trigone of bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "trigone of bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "trigone of bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "trigone of bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone involuntary muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone non-striated muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "vesical trigone involuntary muscle" EXACT [OBOL:automatic]
synonym: "vesical trigone non-striated muscle" EXACT [OBOL:automatic]
synonym: "vesical trigone smooth muscle" EXACT [OBOL:automatic]
synonym: "vesical trigone smooth muscle tissue" EXACT [OBOL:automatic]
xref: MA:0001700
is_a: UBERON:0004228 ! urinary bladder smooth muscle
relationship: part_of UBERON:0001257
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder
relationship: part_of UBERON:0001257 ! trigone of urinary bladder
[Term]
id: UBERON:0004230
name: urinary bladder neck smooth muscle
def: "A portion of smooth muscle tissue that is part of a neck of urinary bladder [Obol]." [OBOL:automatic]
synonym: "bladder neck involuntary muscle" EXACT [OBOL:automatic]
synonym: "bladder neck non-striated muscle" EXACT [OBOL:automatic]
synonym: "bladder neck smooth muscle" EXACT [OBOL:automatic]
synonym: "bladder neck smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bladder neck" EXACT [OBOL:automatic]
synonym: "involuntary muscle of neck of bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "involuntary muscle of vesical neck" EXACT [OBOL:automatic]
synonym: "neck of bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "neck of bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "neck of bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "neck of bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bladder neck" EXACT [OBOL:automatic]
synonym: "non-striated muscle of neck of bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "non-striated muscle of vesical neck" EXACT [OBOL:automatic]
synonym: "smooth muscle of bladder neck" EXACT [OBOL:automatic]
synonym: "smooth muscle of neck of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "smooth muscle of vesical neck" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bladder neck" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of neck of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of vesical neck" EXACT [OBOL:automatic]
synonym: "urinary bladder neck involuntary muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder neck non-striated muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder neck smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "vesical neck involuntary muscle" EXACT [OBOL:automatic]
synonym: "vesical neck non-striated muscle" EXACT [OBOL:automatic]
synonym: "vesical neck smooth muscle" EXACT [OBOL:automatic]
synonym: "vesical neck smooth muscle tissue" EXACT [OBOL:automatic]
xref: MA:0001699
is_a: UBERON:0004228 ! urinary bladder smooth muscle
relationship: part_of UBERON:0001258
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001258 ! neck of urinary bladder
relationship: part_of UBERON:0001258 ! neck of urinary bladder
[Term]
id: UBERON:0004231
name: anal region smooth muscle
def: "A portion of smooth muscle tissue that is part of an anal region [Obol]." [OBOL:automatic]
synonym: "anal part of perineum involuntary muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum non-striated muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum smooth muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "anal region involuntary muscle" EXACT [OBOL:automatic]
synonym: "anal region non-striated muscle" EXACT [OBOL:automatic]
synonym: "anal region smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "anal triangle involuntary muscle" EXACT [OBOL:automatic]
synonym: "anal triangle non-striated muscle" EXACT [OBOL:automatic]
synonym: "anal triangle smooth muscle" EXACT [OBOL:automatic]
synonym: "anal triangle smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "involuntary muscle of anal region" EXACT [OBOL:automatic]
synonym: "involuntary muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "non-striated muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "non-striated muscle of anal region" EXACT [OBOL:automatic]
synonym: "non-striated muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "smooth muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "smooth muscle of anal region" EXACT [OBOL:automatic]
synonym: "smooth muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of anal part of perineum" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of anal region" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of anal triangle" EXACT [OBOL:automatic]
xref: MA:0001532
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0001353
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001353 ! anal region
relationship: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0004232
name: lymphatic vessel smooth muscle
def: "A portion of smooth muscle tissue that is part of a lymphatic vessel [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of lymph vessel" EXACT [OBOL:automatic]
synonym: "involuntary muscle of lymphatic vessel" EXACT [OBOL:automatic]
synonym: "lymph vessel involuntary muscle" EXACT [OBOL:automatic]
synonym: "lymph vessel non-striated muscle" EXACT [OBOL:automatic]
synonym: "lymph vessel smooth muscle" EXACT [OBOL:automatic]
synonym: "lymph vessel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "lymphatic vessel involuntary muscle" EXACT [OBOL:automatic]
synonym: "lymphatic vessel non-striated muscle" EXACT [OBOL:automatic]
synonym: "lymphatic vessel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lymph vessel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lymphatic vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle of lymph vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle of lymphatic vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lymph vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lymphatic vessel" EXACT [OBOL:automatic]
xref: MA:0000751
xref: ncithesaurus:Lymphatic_Vessel_Smooth_Muscle_Tissue
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0001473
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001473 ! lymphatic vessel
relationship: part_of UBERON:0001473 ! lymphatic vessel
[Term]
id: UBERON:0004233
name: lower respiratory tract smooth muscle
def: "A portion of smooth muscle tissue that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "lower respiratory tract involuntary muscle" EXACT [OBOL:automatic]
synonym: "lower respiratory tract non-striated muscle" EXACT [OBOL:automatic]
synonym: "lower respiratory tract smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "smooth muscle of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lower respiratory tract" EXACT [OBOL:automatic]
xref: MA:0002410
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004225 ! respiratory system smooth muscle
relationship: part_of UBERON:0001558
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001558 ! lower respiratory tract
relationship: part_of UBERON:0001558 ! lower respiratory tract
[Term]
id: UBERON:0004234
name: iris smooth muscle
def: "A portion of smooth muscle tissue that is part of a iris [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of iris" EXACT [OBOL:automatic]
synonym: "iris involuntary muscle" EXACT [OBOL:automatic]
synonym: "iris non-striated muscle" EXACT [OBOL:automatic]
synonym: "iris smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of iris" EXACT [OBOL:automatic]
synonym: "smooth muscle of iris" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of iris" EXACT [OBOL:automatic]
xref: BTO:0000655
xref: MA:0001270
is_a: UBERON:0001606 ! muscle of iris
is_a: UBERON:0003386 ! smooth muscle of eye
relationship: part_of UBERON:0001769
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0004235
name: mammary gland smooth muscle
def: "A portion of smooth muscle tissue that is part of a lactiferous gland [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of lactiferous gland" EXACT [OBOL:automatic]
synonym: "involuntary muscle of lobe of breast" EXACT [OBOL:automatic]
synonym: "involuntary muscle of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "involuntary muscle of mammary gland" EXACT [OBOL:automatic]
synonym: "lactiferous gland involuntary muscle" EXACT [OBOL:automatic]
synonym: "lactiferous gland non-striated muscle" EXACT [OBOL:automatic]
synonym: "lactiferous gland smooth muscle" EXACT [OBOL:automatic]
synonym: "lactiferous gland smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast involuntary muscle" EXACT [OBOL:automatic]
synonym: "lobe of breast non-striated muscle" EXACT [OBOL:automatic]
synonym: "lobe of breast smooth muscle" EXACT [OBOL:automatic]
synonym: "lobe of breast smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland involuntary muscle" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland non-striated muscle" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland smooth muscle" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "mammary gland involuntary muscle" EXACT [OBOL:automatic]
synonym: "mammary gland non-striated muscle" EXACT [OBOL:automatic]
synonym: "mammary gland smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lactiferous gland" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lobe of breast" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "non-striated muscle of mammary gland" EXACT [OBOL:automatic]
synonym: "smooth muscle of lactiferous gland" EXACT [OBOL:automatic]
synonym: "smooth muscle of lobe of breast" EXACT [OBOL:automatic]
synonym: "smooth muscle of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "smooth muscle of mammary gland" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of mammary gland" EXACT [OBOL:automatic]
xref: MA:0000795
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001911
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001911 ! mammary gland
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0004236
name: arteriole smooth muscle
def: "A portion of smooth muscle tissue that is part of an arteriole [Obol]." [OBOL:automatic]
xref: MA:0000706
is_a: UBERON:0002111 ! artery smooth muscle tissue
relationship: part_of UBERON:0001980
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001980 ! arteriole
relationship: part_of UBERON:0001980 ! arteriole
[Term]
id: UBERON:0004237
name: blood vessel smooth muscle
alt_id: UBERON:0010508
def: "smooth muscle found within, and composing the majority of the wall of blood vessels." [Wikipedia:Vascular_smooth_muscle]
comment: Function notes: Vascular smooth muscle contracts or relaxes to both change the volume of blood vessels and the local blood pressure, a mechanism that is responsible for the redistribution of the blood within the body to areas where it is needed (i.e. areas with temporarily enhanced oxygen consumption). Thus the main function of vascular smooth muscle tonus is to regulate the caliber of the blood vessels in the body. Excessive vasoconstriction leads to hypertension, while excessive vasodilation as in shock leads to hypotension.
synonym: "blood vessel involuntary muscle" EXACT [OBOL:automatic]
synonym: "blood vessel non-striated muscle" EXACT [OBOL:automatic]
synonym: "blood vessel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of blood vessel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of blood vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle of blood vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of blood vessel" EXACT [OBOL:automatic]
synonym: "vascular smooth muscle" EXACT [ZFA:0005321]
synonym: "vascular smooth muscle tissue" EXACT []
xref: BTO:0001431
xref: MA:0000710
xref: MESH:A.02.633.570.491
xref: ncithesaurus:Vascular_Smooth_Muscle_Tissue
xref: TAO:0005321
xref: ZFA:0005321
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0001981
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0004238
name: spleen smooth muscle
def: "A portion of smooth muscle tissue that is part of a spleen [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of spleen" EXACT [OBOL:automatic]
synonym: "non-striated muscle of spleen" EXACT [OBOL:automatic]
synonym: "smooth muscle of spleen" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of spleen" EXACT [OBOL:automatic]
synonym: "spleen involuntary muscle" EXACT [OBOL:automatic]
synonym: "spleen non-striated muscle" EXACT [OBOL:automatic]
synonym: "spleen smooth muscle tissue" EXACT [OBOL:automatic]
xref: MA:0000757
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0002106
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0004239
name: small intestine smooth muscle
def: "A portion of smooth muscle tissue that is part of a small intestine [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of small bowel" EXACT [OBOL:automatic]
synonym: "involuntary muscle of small intestine" EXACT [OBOL:automatic]
synonym: "non-striated muscle of small bowel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel involuntary muscle" EXACT [OBOL:automatic]
synonym: "small bowel non-striated muscle" EXACT [OBOL:automatic]
synonym: "small bowel smooth muscle" EXACT [OBOL:automatic]
synonym: "small bowel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "small intestine involuntary muscle" EXACT [OBOL:automatic]
synonym: "small intestine non-striated muscle" EXACT [OBOL:automatic]
synonym: "small intestine smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of small bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle of small intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of small bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of small intestine" EXACT [OBOL:automatic]
xref: MA:0001559
is_a: UBERON:0004221 ! intestine smooth muscle
relationship: part_of UBERON:0002108
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001168 ! wall of small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0004240
name: gall bladder smooth muscle
def: "A portion of smooth muscle tissue that is part of a gallbladder [Obol]." [OBOL:automatic]
synonym: "biliary smooth muscle" RELATED [MA:0001635]
synonym: "gall bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "gall bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "gall bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "gallbladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "gallbladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "gallbladder smooth muscle" EXACT [OBOL:automatic]
synonym: "gallbladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gall bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gallbladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gall bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gallbladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of gall bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of gallbladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gall bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gallbladder" EXACT [OBOL:automatic]
xref: MA:0001635
xref: ncithesaurus:Gallbladder_Smooth_Muscle_Tissue
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0002110
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002110 ! gallbladder
relationship: part_of UBERON:0002110 ! gallbladder
[Term]
id: UBERON:0004241
name: main bronchus smooth muscle
def: "A portion of smooth muscle tissue that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "bronchus principalis involuntary muscle" EXACT [OBOL:automatic]
synonym: "bronchus principalis non-striated muscle" EXACT [OBOL:automatic]
synonym: "bronchus principalis smooth muscle" EXACT [OBOL:automatic]
synonym: "bronchus principalis smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bronchus principalis" EXACT [OBOL:automatic]
synonym: "involuntary muscle of main bronchus" EXACT [OBOL:automatic]
synonym: "involuntary muscle of primary bronchus" EXACT [OBOL:automatic]
synonym: "involuntary muscle of principal bronchus" EXACT [OBOL:automatic]
synonym: "main bronchus involuntary muscle" EXACT [OBOL:automatic]
synonym: "main bronchus non-striated muscle" EXACT [OBOL:automatic]
synonym: "main bronchus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bronchus principalis" EXACT [OBOL:automatic]
synonym: "non-striated muscle of main bronchus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of primary bronchus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of principal bronchus" EXACT [OBOL:automatic]
synonym: "primary bronchus involuntary muscle" EXACT [OBOL:automatic]
synonym: "primary bronchus non-striated muscle" EXACT [OBOL:automatic]
synonym: "primary bronchus smooth muscle" EXACT [OBOL:automatic]
synonym: "primary bronchus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "principal bronchus involuntary muscle" EXACT [OBOL:automatic]
synonym: "principal bronchus non-striated muscle" EXACT [OBOL:automatic]
synonym: "principal bronchus smooth muscle" EXACT [OBOL:automatic]
synonym: "principal bronchus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of bronchus principalis" EXACT [OBOL:automatic]
synonym: "smooth muscle of main bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle of primary bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle of principal bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bronchus principalis" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of main bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of primary bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of principal bronchus" EXACT [OBOL:automatic]
xref: MA:0001848
is_a: UBERON:0004242 ! bronchus smooth muscle
relationship: part_of UBERON:0002182
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0004242
name: bronchus smooth muscle
def: "A portion of smooth muscle tissue that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "bronchi involuntary muscle" EXACT [OBOL:automatic]
synonym: "bronchi non-striated muscle" EXACT [OBOL:automatic]
synonym: "bronchi smooth muscle" EXACT [OBOL:automatic]
synonym: "bronchi smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk involuntary muscle" EXACT [OBOL:automatic]
synonym: "bronchial trunk non-striated muscle" EXACT [OBOL:automatic]
synonym: "bronchial trunk smooth muscle" EXACT [OBOL:automatic]
synonym: "bronchial trunk smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "bronchus involuntary muscle" EXACT [OBOL:automatic]
synonym: "bronchus non-striated muscle" EXACT [OBOL:automatic]
synonym: "bronchus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bronchi" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bronchial trunk" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bronchus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bronchi" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bronchial trunk" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle of bronchi" EXACT [OBOL:automatic]
synonym: "smooth muscle of bronchial trunk" EXACT [OBOL:automatic]
synonym: "smooth muscle of bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bronchi" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bronchus" EXACT [OBOL:automatic]
xref: MA:0001840
xref: ncithesaurus:Bronchus_Smooth_Muscle_Tissue
is_a: UBERON:0004233 ! lower respiratory tract smooth muscle
relationship: part_of UBERON:0002185
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0004243
name: prostate gland smooth muscle
def: "A portion of smooth muscle tissue that is part of a prostate gland [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of prostate" EXACT [OBOL:automatic]
synonym: "involuntary muscle of prostate gland" EXACT [OBOL:automatic]
synonym: "muscular tissue of prostate" EXACT [FMA:74245]
synonym: "non-striated muscle of prostate" EXACT [OBOL:automatic]
synonym: "non-striated muscle of prostate gland" EXACT [OBOL:automatic]
synonym: "prostate gland involuntary muscle" EXACT [OBOL:automatic]
synonym: "prostate gland non-striated muscle" EXACT [OBOL:automatic]
synonym: "prostate gland smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "prostate involuntary muscle" EXACT [OBOL:automatic]
synonym: "prostate non-striated muscle" EXACT [OBOL:automatic]
synonym: "prostate smooth muscle" EXACT [OBOL:automatic]
synonym: "prostate smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of prostate" EXACT [OBOL:automatic]
synonym: "smooth muscle of prostate gland" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of prostate" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of prostate gland" EXACT [OBOL:automatic]
synonym: "substantia muscularis prostatae" EXACT [FMA:74245, FMA:TA]
xref: BTO:0003159
xref: FMA:74245
xref: MA:0001741
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0008715 ! muscle tissue of prostate
relationship: part_of UBERON:0002367
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002367 ! prostate gland
relationship: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0004245
name: oviduct smooth muscle
def: "A portion of smooth muscle tissue that is part of a fallopian tube [Obol]." [OBOL:automatic]
synonym: "fallopian tube involuntary muscle" EXACT [OBOL:automatic]
synonym: "fallopian tube non-striated muscle" EXACT [OBOL:automatic]
synonym: "fallopian tube smooth muscle" EXACT [OBOL:automatic]
synonym: "fallopian tube smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of fallopian tube" EXACT [OBOL:automatic]
synonym: "non-striated muscle of fallopian tube" EXACT [OBOL:automatic]
synonym: "smooth muscle of fallopian tube" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of fallopian tube" EXACT [OBOL:automatic]
xref: MA:0001721
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0003889
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0003889 ! fallopian tube
relationship: part_of UBERON:0003889 ! fallopian tube
[Term]
id: UBERON:0004246
name: outflow tract smooth muscle
def: "A portion of smooth muscle tissue that is part of a outflow tract [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "non-striated muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "outflow tract involuntary muscle" EXACT [OBOL:automatic]
synonym: "outflow tract non-striated muscle" EXACT [OBOL:automatic]
synonym: "outflow tract smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of outflow tract" EXACT [OBOL:automatic]
xref: MA:0000492
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0004145
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0004145 ! outflow tract
relationship: part_of UBERON:0004145 ! outflow tract
[Term]
id: UBERON:0004247
name: back bone
def: "A bone that is part of a back [Obol]." [OBOL:automatic]
synonym: "back bone organ" EXACT [OBOL:automatic]
synonym: "bone of back" EXACT [OBOL:automatic]
synonym: "bone organ of back" EXACT [OBOL:automatic]
xref: MA:0000494
is_a: UBERON:0001474 ! bone
is_a: UBERON:0005174 ! back organ
relationship: part_of UBERON:0001137
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001137 ! dorsum
relationship: part_of UBERON:0001137 ! dorsum
[Term]
id: UBERON:0004248
name: foot digit bone
def: "A bone that is part of a toe [Obol]." [OBOL:automatic]
synonym: "bone of digit of foot" EXACT [OBOL:automatic]
synonym: "bone of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "bone of digitus pedis" EXACT [OBOL:automatic]
synonym: "bone of foot digit" EXACT [OBOL:automatic]
synonym: "bone of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "bone of toe" EXACT [OBOL:automatic]
synonym: "bone organ of digit of foot" EXACT [OBOL:automatic]
synonym: "bone organ of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "bone organ of digitus pedis" EXACT [OBOL:automatic]
synonym: "bone organ of foot digit" EXACT [OBOL:automatic]
synonym: "bone organ of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "bone organ of toe" EXACT [OBOL:automatic]
synonym: "digit of foot bone" EXACT [OBOL:automatic]
synonym: "digit of foot bone organ" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb bone" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb bone organ" EXACT [OBOL:automatic]
synonym: "digitus pedis bone" EXACT [OBOL:automatic]
synonym: "digitus pedis bone organ" EXACT [OBOL:automatic]
synonym: "foot digit bone organ" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit bone" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit bone organ" EXACT [OBOL:automatic]
synonym: "toe bone" EXACT [OBOL:automatic]
synonym: "toe bone organ" EXACT [OBOL:automatic]
xref: MA:0000646
is_a: UBERON:0005899 ! foot bone
relationship: part_of UBERON:0001466
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit
[Term]
id: UBERON:0004249
name: hand digit bone
def: "A bone that is part of a finger [Obol]." [OBOL:automatic]
synonym: "bone of digit of hand" EXACT [OBOL:automatic]
synonym: "bone of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of digitus manus" EXACT [OBOL:automatic]
synonym: "bone of finger" EXACT [OBOL:automatic]
synonym: "bone of hand digit" EXACT [OBOL:automatic]
synonym: "bone of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "bone organ of digit of hand" EXACT [OBOL:automatic]
synonym: "bone organ of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of digitus manus" EXACT [OBOL:automatic]
synonym: "bone organ of finger" EXACT [OBOL:automatic]
synonym: "bone organ of hand digit" EXACT [OBOL:automatic]
synonym: "bone organ of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "digit of hand bone" EXACT [OBOL:automatic]
synonym: "digit of hand bone organ" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "digitus manus bone" EXACT [OBOL:automatic]
synonym: "digitus manus bone organ" EXACT [OBOL:automatic]
synonym: "finger bone" EXACT [OBOL:automatic]
synonym: "finger bone organ" EXACT [OBOL:automatic]
synonym: "hand digit bone organ" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit bone" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit bone organ" EXACT [OBOL:automatic]
xref: MA:0000622
is_a: UBERON:0005897 ! hand bone
relationship: part_of UBERON:0002389
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit
[Term]
id: UBERON:0004250
name: upper arm bone
def: "A bone that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
synonym: "arm stylopod bone" EXACT [OBOL:automatic]
synonym: "arm stylopod bone organ" EXACT [OBOL:automatic]
synonym: "bone of arm stylopod" EXACT [OBOL:automatic]
synonym: "bone of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "bone of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "bone of stylopod of arm" EXACT [OBOL:automatic]
synonym: "bone of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "bone of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of upper arm" EXACT [OBOL:automatic]
synonym: "bone organ of arm stylopod" EXACT [OBOL:automatic]
synonym: "bone organ of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "bone organ of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "bone organ of stylopod of arm" EXACT [OBOL:automatic]
synonym: "bone organ of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "bone organ of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of upper arm" EXACT [OBOL:automatic]
synonym: "brachial region stylopod bone" EXACT [OBOL:automatic]
synonym: "brachial region stylopod bone organ" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod bone" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod bone organ" EXACT [OBOL:automatic]
synonym: "stylopod of arm bone" EXACT [OBOL:automatic]
synonym: "stylopod of arm bone organ" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region bone" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region bone organ" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "upper arm bone organ" EXACT [OBOL:automatic]
xref: MA:0000604
is_a: UBERON:0003460 ! arm bone
relationship: part_of UBERON:0003822
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
relationship: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0004251
name: lower leg bone
def: "A bone that is part of a lower leg [Obol]." [OBOL:automatic]
synonym: "bone of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "bone of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "bone of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "bone of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "bone of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "bone of lower leg" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "bone organ of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "bone organ of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of lower leg" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment bone" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod bone" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment bone" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod bone" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment bone" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod bone" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb bone" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb bone organ" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment bone" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod bone" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "lower leg bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb bone" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb bone" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member bone" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of leg bone" EXACT [OBOL:automatic]
synonym: "zeugopod of leg bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity bone" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity bone organ" EXACT [OBOL:automatic]
xref: MA:0000676
is_a: UBERON:0005893 ! leg bone
relationship: part_of UBERON:0003823
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0004252
name: hindlimb stylopod muscle
alt_id: UBERON:0000374
def: "A muscle organ that is part of a hindlimb stylopod (upper leg)[Obol]." [OBOL:automatic]
synonym: "muscle of thigh" EXACT [FMA:22470]
synonym: "thigh muscle" EXACT [FMA:22470]
synonym: "upper leg muscle" EXACT [MA:0000684]
xref: BTO:0001367
xref: FMA:22470
xref: MA:0000684
is_a: UBERON:0001383 ! muscle of leg
relationship: part_of UBERON:0000376
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0004253
name: skin muscle
def: "A muscle organ that is part of a skin of body [Obol]." [OBOL:automatic]
synonym: "muscle organ of skin" EXACT [OBOL:automatic]
synonym: "skin muscle organ" EXACT [OBOL:automatic]
xref: MA:0002710
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002097
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002097 ! skin of body
relationship: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0004254
name: forelimb zeugopod muscle
def: "A muscle organ that is part of a forelimb zeugopod (lower arm)[Obol]." [OBOL:automatic]
synonym: "forearm muscle" EXACT [FMA:37371]
synonym: "lower arm muscle" EXACT [MA:0000600]
synonym: "muscle of forearm" EXACT [FMA:37371]
xref: FMA:37371
xref: MA:0000600
xref: SCTID:181631004
is_a: UBERON:0001499 ! muscle of arm
relationship: part_of UBERON:0002386
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0004255
name: forelimb stylopod muscle
def: "A muscle organ that is part of a forelimb stylopod (upper arm)[Obol]." [OBOL:automatic]
synonym: "muscle of arm" RELATED INCONSISTENT [FMA:37370]
synonym: "upper arm muscle" EXACT [MA:0000606]
xref: FMA:37370
xref: MA:0000606
xref: SCTID:244979005
is_a: UBERON:0001499 ! muscle of arm
relationship: part_of UBERON:0003822
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
relationship: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0004256
name: hindlimb zeugopod muscle
def: "A muscle organ that is part of a hindlimb zeugopod (lower leg) [Obol]." [OBOL:automatic]
synonym: "lower leg muscle" EXACT [MA:0000678]
synonym: "muscle of leg" RELATED INCONSISTENT [FMA:22471]
xref: FMA:22471
xref: MA:0000678
is_a: UBERON:0001383 ! muscle of leg
relationship: part_of UBERON:0003823
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0004257
name: upper leg blood vessel
def: "A blood vessel that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
synonym: "blood vessel of stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "blood vessel of stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "blood vessel of thigh" EXACT [OBOL:automatic]
synonym: "blood vessel of upper leg" EXACT [OBOL:automatic]
synonym: "hind limb stylopod blood vessel" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod blood vessel" EXACT [OBOL:automatic]
synonym: "thigh blood vessel" EXACT [OBOL:automatic]
xref: MA:0000681
is_a: UBERON:0003503 ! leg blood vessel
is_a: UBERON:0005225 ! upper leg epithelium
relationship: part_of UBERON:0000376
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0004258
name: back blood vessel
def: "A blood vessel that is part of a back [Obol]." [OBOL:automatic]
synonym: "blood vessel of back" EXACT [OBOL:automatic]
xref: MA:0000493
is_a: UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0001137
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001137 ! dorsum
relationship: part_of UBERON:0001137 ! dorsum
[Term]
id: UBERON:0004259
name: lower arm blood vessel
def: "A blood vessel that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "forelimb zeugopod blood vessel" EXACT [UBERON:cjm]
xref: MA:0000597
is_a: UBERON:0003247 ! epithelium of forearm
is_a: UBERON:0003507 ! arm blood vessel
relationship: part_of UBERON:0002386
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0004260
name: upper arm blood vessel
def: "A blood vessel that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
synonym: "forelimb stylopod blood vessel" EXACT [UBERON:cjm]
xref: MA:0000603
is_a: UBERON:0003507 ! arm blood vessel
is_a: UBERON:0005228 ! upper arm epithelium
relationship: part_of UBERON:0003822
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
relationship: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0004261
name: lower leg blood vessel
def: "A blood vessel that is part of a lower leg [Obol]." [OBOL:automatic]
synonym: "hindlimb zeugopod blood vessel" EXACT [UBERON:cjm]
xref: MA:0000675
is_a: UBERON:0003503 ! leg blood vessel
is_a: UBERON:0005229 ! lower leg epithelium
relationship: part_of UBERON:0003823
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0004262
name: upper leg skin
def: "A zone of skin that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
synonym: "hind limb stylopod skin" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod skin" EXACT [OBOL:automatic]
synonym: "inferior member stylopod skin" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod skin" EXACT [OBOL:automatic]
synonym: "Proximal segment of free lower limb skin" EXACT [OBOL:automatic]
synonym: "skin of hind limb stylopod" EXACT [OBOL:automatic]
synonym: "skin of hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "skin of inferior member stylopod" EXACT [OBOL:automatic]
synonym: "skin of lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "skin of Proximal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "skin of stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "skin of stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "skin of stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "skin of stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "skin of stylopod of lower limb" EXACT [OBOL:automatic]
synonym: "skin of thigh" EXACT [OBOL:automatic]
synonym: "skin of upper leg" EXACT [OBOL:automatic]
synonym: "stylopod of hind limb skin" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb skin" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member skin" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity skin" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb skin" EXACT [OBOL:automatic]
synonym: "thigh skin" EXACT [OBOL:automatic]
xref: EMAPA:18159
xref: FMA:37790
xref: MA:0000686
xref: SCTID:181547006
is_a: UBERON:0001511 ! skin of leg
relationship: part_of UBERON:0000376
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0004263
name: upper arm skin
def: "A zone of skin that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
synonym: "arm stylopod skin" EXACT [OBOL:automatic]
synonym: "brachial region stylopod skin" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb skin" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod skin" EXACT [OBOL:automatic]
synonym: "skin of arm stylopod" EXACT [OBOL:automatic]
synonym: "skin of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "skin of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "skin of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "skin of stylopod of arm" EXACT [OBOL:automatic]
synonym: "skin of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "skin of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "skin of upper arm" EXACT [OBOL:automatic]
synonym: "stylopod of arm skin" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region skin" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb skin" EXACT [OBOL:automatic]
xref: EMAPA:18062
xref: MA:0000608
xref: SCTID:181531009
is_a: UBERON:0002427 ! arm skin
relationship: part_of UBERON:0003822
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
relationship: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0004264
name: lower leg skin
def: "A zone of skin that is part of a lower leg [Obol]." [OBOL:automatic]
synonym: "hind limb middle limb segment skin" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod skin" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment skin" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod skin" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment skin" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod skin" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb skin" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment skin" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity skin" EXACT [OBOL:automatic]
synonym: "skin of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "skin of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "skin of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "skin of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "skin of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "skin of lower leg" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb skin" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb skin" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member skin" EXACT [OBOL:automatic]
synonym: "zeugopod of leg skin" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity skin" EXACT [OBOL:automatic]
xref: EMAPA:18156
xref: MA:0000680
xref: SCTID:244180007
is_a: UBERON:0001511 ! skin of leg
relationship: part_of UBERON:0003823
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0004265
name: outflow tract myocardium
def: "A myocardium that is part of a outflow tract [Obol]." [OBOL:automatic]
synonym: "cardiac muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "heart muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "heart myocardium of outflow tract" EXACT [OBOL:automatic]
synonym: "muscle of heart of outflow tract" EXACT [OBOL:automatic]
synonym: "myocardium of outflow tract" EXACT [OBOL:automatic]
synonym: "outflow tract cardiac muscle" EXACT [OBOL:automatic]
synonym: "outflow tract heart muscle" EXACT [OBOL:automatic]
synonym: "outflow tract heart myocardium" EXACT [OBOL:automatic]
synonym: "outflow tract muscle of heart" EXACT [OBOL:automatic]
xref: EHDAA2:0001358
xref: MA:0000489
xref: VHOG:0000603
is_a: UBERON:0002349 ! myocardium
relationship: part_of UBERON:0004145
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0004145 ! outflow tract
relationship: part_of UBERON:0004145 ! outflow tract
[Term]
id: UBERON:0004266
name: upper leg connective tissue
def: "A portion of connective tissue that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
synonym: "connective tissue of hind limb stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of Proximal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of lower limb" EXACT [OBOL:automatic]
synonym: "connective tissue of thigh" EXACT [OBOL:automatic]
synonym: "connective tissue of upper leg" EXACT [OBOL:automatic]
synonym: "hind limb stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of Proximal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of lower limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of thigh" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of upper leg" EXACT [OBOL:automatic]
synonym: "Proximal segment of free lower limb connective tissue" EXACT [OBOL:automatic]
synonym: "Proximal segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "Proximal segment of free lower limb textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of Proximal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of lower limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of thigh" EXACT [OBOL:automatic]
synonym: "textus connectivus of upper leg" EXACT [OBOL:automatic]
synonym: "thigh connective tissue" EXACT [OBOL:automatic]
synonym: "thigh portion of connective tissue" EXACT [OBOL:automatic]
synonym: "thigh textus connectivus" EXACT [OBOL:automatic]
synonym: "upper leg portion of connective tissue" EXACT [OBOL:automatic]
synonym: "upper leg textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000683
is_a: UBERON:0003569 ! leg connective tissue
relationship: part_of UBERON:0000376
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0004267
name: back connective tissue
def: "A portion of connective tissue that is part of a back [Obol]." [OBOL:automatic]
synonym: "back portion of connective tissue" EXACT [OBOL:automatic]
synonym: "back textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of back" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of back" EXACT [OBOL:automatic]
synonym: "textus connectivus of back" EXACT [OBOL:automatic]
xref: MA:0000495
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0001137
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001137 ! dorsum
relationship: part_of UBERON:0001137 ! dorsum
[Term]
id: UBERON:0004268
name: lower arm connective tissue
def: "A portion of connective tissue that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region connective tissue" EXACT [OBOL:automatic]
synonym: "antebrachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "antebrachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "arm middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "arm middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "arm zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "arm zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of antebrachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of arm zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of lower arm" EXACT [OBOL:automatic]
synonym: "connective tissue of lower segment of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "lower arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower arm textus connectivus" EXACT [OBOL:automatic]
synonym: "lower segment of arm connective tissue" EXACT [OBOL:automatic]
synonym: "lower segment of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower segment of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of antebrachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower segment of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of antebrachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower segment of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "zeugopod of arm connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000599
is_a: UBERON:0003573 ! arm connective tissue
relationship: part_of UBERON:0002386
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0004269
name: upper arm connective tissue
def: "A portion of connective tissue that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
synonym: "arm stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "arm stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of arm stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of upper arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of upper arm" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of arm connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of upper arm" EXACT [OBOL:automatic]
synonym: "upper arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "upper arm textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000605
is_a: UBERON:0003573 ! arm connective tissue
relationship: part_of UBERON:0003822
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
relationship: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0004270
name: lower leg connective tissue
def: "A portion of connective tissue that is part of a lower leg [Obol]." [OBOL:automatic]
synonym: "connective tissue of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of lower leg" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb connective tissue" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "lower leg portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower leg textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower leg" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower leg" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of leg connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of leg portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of leg textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000677
is_a: UBERON:0003569 ! leg connective tissue
relationship: part_of UBERON:0003823
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0004271
name: outflow tract pericardium
def: "A pericardium that is part of a outflow tract [Obol]." [OBOL:automatic]
synonym: "pericardium of outflow tract" EXACT [OBOL:automatic]
xref: MA:0000491
is_a: UBERON:0002407 ! pericardium
relationship: part_of UBERON:0004145
intersection_of: UBERON:0002407 ! pericardium
intersection_of: part_of UBERON:0004145 ! outflow tract
relationship: part_of UBERON:0004145 ! outflow tract
[Term]
id: UBERON:0004273
name: cartilaginous joint suture
def: "A cranial suture that is part of a cartilaginous joint [Obol]." [OBOL:automatic]
synonym: "articulatio cartilaginea cranial suture" EXACT [OBOL:automatic]
synonym: "articulatio cartilaginea cranial sutures" EXACT [OBOL:automatic]
synonym: "articulatio cartilaginea cranial sutures set" EXACT [OBOL:automatic]
synonym: "articulatio cartilaginea cranium suture" EXACT [OBOL:automatic]
synonym: "articulatio cartilaginea suture of cranium" EXACT [OBOL:automatic]
synonym: "cartilaginous joint cranial suture" EXACT [OBOL:automatic]
synonym: "cartilaginous joint cranial sutures" EXACT [OBOL:automatic]
synonym: "cartilaginous joint cranial sutures set" EXACT [OBOL:automatic]
synonym: "cartilaginous joint cranium suture" EXACT [OBOL:automatic]
synonym: "cartilaginous joint suture of cranium" EXACT [OBOL:automatic]
synonym: "cranial suture of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "cranial suture of cartilaginous joint" EXACT [OBOL:automatic]
synonym: "cranial sutures of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "cranial sutures of cartilaginous joint" EXACT [OBOL:automatic]
synonym: "cranial sutures set of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "cranial sutures set of cartilaginous joint" EXACT [OBOL:automatic]
synonym: "cranium suture of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "cranium suture of cartilaginous joint" EXACT [OBOL:automatic]
synonym: "suture of cranium of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "suture of cranium of cartilaginous joint" EXACT [OBOL:automatic]
xref: MA:0001498
is_a: UBERON:0003685 ! cranial suture
relationship: part_of UBERON:0002213
intersection_of: UBERON:0003685 ! cranial suture
intersection_of: part_of UBERON:0002213 ! cartilaginous joint
relationship: part_of UBERON:0002213 ! cartilaginous joint
[Term]
id: UBERON:0004274
name: lateral ventricle choroid plexus epithelium
def: "A choroid plexus epithelium that is part of a lateral ventricle [Obol]." [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of lateral ventricle" EXACT [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelium of lateral ventricle" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelial tissue of lateral ventricle" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelium of lateral ventricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of choroid plexus of lateral ventricle" EXACT [OBOL:automatic]
synonym: "epithelium of chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic]
synonym: "epithelium of choroid plexus of lateral ventricle" EXACT [OBOL:automatic]
synonym: "lateral ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic]
synonym: "lateral ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic]
synonym: "lateral ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic]
synonym: "lateral ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "lateral ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic]
synonym: "lateral ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "lateral ventricle epithelium of choroid plexus" EXACT [OBOL:automatic]
xref: EHDAA2:0004450
xref: FMA:242815
xref: MA:0000962
xref: ncithesaurus:Choroid_Plexus_Epithelium_of_the_Lateral_Ventricle
is_a: UBERON:0003911 ! choroid plexus epithelium
is_a: UBERON:0004643 ! lateral ventricle ependyma
relationship: part_of UBERON:0002307
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002307 ! choroid plexus of lateral ventricle
relationship: part_of UBERON:0002307 ! choroid plexus of lateral ventricle
[Term]
id: UBERON:0004275
name: third ventricle choroid plexus epithelium
def: "A choroid plexus epithelium that is part of a third ventricle [Obol]." [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of third ventricle" EXACT [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelium of third ventricle" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelial tissue of third ventricle" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelium of third ventricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of choroid plexus of third ventricle" EXACT [OBOL:automatic]
synonym: "epithelium of chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic]
synonym: "epithelium of choroid plexus of third ventricle" EXACT [OBOL:automatic]
synonym: "third ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic]
synonym: "third ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic]
synonym: "third ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic]
synonym: "third ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "third ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic]
synonym: "third ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "third ventricle epithelium of choroid plexus" EXACT [OBOL:automatic]
xref: FMA:242821
xref: MA:0000880
is_a: UBERON:0003911 ! choroid plexus epithelium
is_a: UBERON:0004642 ! third ventricle ependyma
relationship: part_of UBERON:0002286
intersection_of: UBERON:0003911 ! choroid plexus epithelium
intersection_of: part_of UBERON:0002286 ! third ventricle
relationship: part_of UBERON:0002286 ! third ventricle
relationship: part_of UBERON:0002288 ! choroid plexus of third ventricle
[Term]
id: UBERON:0004276
name: fourth ventricle choroid plexus epithelium
def: "A choroid plexus epithelium that is part of a fourth ventricle [Obol]." [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of fourth ventricle" EXACT [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelium of fourth ventricle" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelial tissue of fourth ventricle" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelium of fourth ventricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of choroid plexus of fourth ventricle" EXACT [OBOL:automatic]
synonym: "epithelium of chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic]
synonym: "epithelium of choroid plexus of fourth ventricle" EXACT [OBOL:automatic]
synonym: "fourth ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic]
synonym: "fourth ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic]
synonym: "fourth ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic]
synonym: "fourth ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "fourth ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic]
synonym: "fourth ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "fourth ventricle epithelium of choroid plexus" EXACT [OBOL:automatic]
xref: FMA:242823
xref: MA:0000984
xref: ncithesaurus:Choroid_Plexus_Epithelium_of_the_Fourth_Ventricle
is_a: UBERON:0003911 ! choroid plexus epithelium
is_a: UBERON:0004644 ! fourth ventricle ependyma
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002422
intersection_of: UBERON:0003911 ! choroid plexus epithelium
intersection_of: part_of UBERON:0002422 ! fourth ventricle
relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle
relationship: part_of UBERON:0002422 ! fourth ventricle
[Term]
id: UBERON:0004277
name: eye muscle
def: "A muscle that is part of the eye region." [OBOL:automatic]
xref: AAO:0000156
xref: MA:0000271
xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycB4rvYA8cJwpEbGdrcN5Y29ycA
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0002376 ! muscle of head
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000019
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000019 {source="MA"} ! camera-type eye
[Term]
id: UBERON:0004288
name: skeleton
def: "all the bones and/or cartilaginous elements in the body. Together with the articular system, this comprises the skeletal system." [FMA:23875, UBERON:cjm, Wikipedia:Skeleton]
comment: Note that the source FMA definition has been modified here to include cartilage skeletons. We may wish to introduce subclasses for bony/cartilage skeletons.
subset: uberon_slim
synonym: "set of all bones" EXACT []
synonym: "set of bones of body" EXACT []
xref: AEO:0000168
xref: EFO:0000806
xref: EHDAA2:0001843
xref: EHDAA:5047
xref: EHDAA:8005
xref: EHDAA:8041
xref: FMA:23875
xref: GAID:177
xref: galen:Skeleton
xref: MA:0003006
xref: MAT:0000032
xref: MESH:A.02.835
xref: MIAA:0000032
xref: OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA
xref: SCTID:361378004
xref: VSAO:0000026
xref: XAO:0004053
property_value: UBPROP:0000001 "Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body.[VSAO]" xsd:string
is_a: UBERON:0000480 ! anatomical group
disjoint_from: UBERON:0004770 ! articular system
relationship: part_of UBERON:0001434 ! skeletal system
[Term]
id: UBERON:0004289
name: radula
def: "an anatomical structure found in mollusks and used for feeding. It is a minutely toothed, chitinous ribbon. It is typically used for scraping or cutting food before the food enters the esophagus. The radula is unique to the molluscs, and is found in all classes of mollusks except for the bivalves." [Wikipedia:Radula]
comment: The first bona fide radula dates to the Early Cambrian,[3] although trace fossils from the earlier Ediacaran have been suggested to have been made by the radula of the organism Kimberella.[WP]
xref: BTO:0001506
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0004290
name: dermomyotome
def: "Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis. Within the dermomyotome there is also a medio-lateral difference. The central region makes dermis, the mesenchymal connective tissue of the back skin. The medial region (closest to neural tube) makes epaxial muscle, and the lateral region (furthest from neural tube) makes hypaxial muscle." [http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=eurekah&part=A66768]
xref: AAO:0010572
xref: AEO:0000214
xref: EHDAA2:0003259
xref: ncithesaurus:Dermomyotome
xref: TAO:0001513
xref: VHOG:0000676
xref: ZFA:0001513
property_value: UBPROP:0000001 "Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis.[TAO]" xsd:string
property_value: UBPROP:0000001 "Portion of somites that gives rise to dermis and muscles.[AAO]" xsd:string
is_a: UBERON:0000486 {source="EHDAA2"} ! multilaminar epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0002329 {source="EHDAA2", source="ZFA"} ! somite
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0004291
name: heart rudiment
def: "a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003313]
synonym: "heart cone" EXACT [GO:0003313]
synonym: "rudimentary heart" EXACT [ZFA:0000115]
xref: TAO:0000115
xref: ZFA:0000115
property_value: UBPROP:0000001 "The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5hpf and 22hpf, and eventually telescope out into the primitive heart tube at 24hpf. Stainier 2001.[TAO]" xsd:string
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0003084 {source="ZFA"} ! heart primordium
relationship: develops_from UBERON:0004139 ! cardiogenic plate
[Term]
id: UBERON:0004292
name: cardiac skeleton
def: "a specialized extracellular matrix that separates the atria from the ventricles and provides physical support for the heart[GO]. structure of dense connective tissue in the heart that separates the atria from the ventricles. It is not a true skeleton, but it does provide structure and support for the heart, as well as isolating the atria from the ventricles. This allows the AV node and AV bundle to delay the wave of depolarisation such that the atria can contract and assist in ventricular filling before the ventricles themselves depolarise and contract (the AV bundle is the only part of the conduction system that passes from the atria to the ventricles in a normal heart). It also allows the valves (bicuspid, tricuspid, semilunar) to keep open by giving them structural support." [Wikipedia:Cardiac_skeleton]
synonym: "anulus fibrosus dexter cordis, anulus fibrosus sinister cordis" RELATED LATIN [Wikipedia:Cardiac_skeleton]
synonym: "cardiac fibrous skeleton" EXACT []
synonym: "fibrous skeleton of heart" EXACT []
synonym: "heart fibrous skeleton" EXACT []
synonym: "skeleton of heart" EXACT [FMA:9496]
synonym: "trigonum fibrosum dextrum cordis, trigonum fibrosum sinistrum cordis, trigona fibrosa" RELATED LATIN [Wikipedia:Cardiac_skeleton]
xref: FMA:9496
xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0004293
name: parasympathetic nerve
def: "A nerve that is part of a parasympathetic nervous system [Obol]." [OBOL:automatic]
synonym: "nerve of parasympathetic nervous system" EXACT [OBOL:automatic]
xref: AAO:0010488
xref: EHDAA2:0001401
xref: EMAPA:17271
xref: MA:0000224
xref: SCTID:276146002
xref: VHOG:0000641
property_value: UBPROP:0000001 "Part of the autonomic nervous system which has opposing physiological effects of the sympathetic nervous system. Examples include decreasing the heart rate or dilating the blood vessels.[AAO]" xsd:string
is_a: UBERON:0001021 ! nerve
relationship: part_of UBERON:0000011
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000011 ! parasympathetic nervous system
relationship: has_developmental_contribution_from UBERON:0005428 {source="NBK10065"} ! vagal neural crest
relationship: has_developmental_contribution_from UBERON:0010075 {source="NBK10065"} ! sacral neural crest
relationship: part_of UBERON:0000011 ! parasympathetic nervous system
[Term]
id: UBERON:0004294
name: glomerular capillary endothelium
synonym: "renal glomerulus capillary endothelium" EXACT [OBOL:automatic]
xref: MA:0001658
xref: ncithesaurus:Endothelium_of_the_Glomerular_Capillary
xref: SCTID:243993006
is_a: UBERON:0001915 ! endothelium of capillary
is_a: UBERON:0004189 ! glomerular endothelium
is_a: UBERON:0004810 ! nephron tubule epithelium
relationship: part_of UBERON:0004212
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0004212 ! glomerular capillary
relationship: part_of UBERON:0004212 ! glomerular capillary
[Term]
id: UBERON:0004295
name: sympathetic nerve trunk
def: "A nerve trunk that is part of a sympathetic nervous system [Obol]." [OBOL:automatic]
synonym: "nerve trunk of sympathetic nervous system" EXACT [OBOL:automatic]
synonym: "nerve trunk of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic]
synonym: "sympathetic nervous system nerve trunk" EXACT [OBOL:automatic]
xref: EHDAA2:0001970
xref: EMAPA:16986
xref: MA:0000227
is_a: UBERON:0002464 ! nerve trunk
relationship: part_of UBERON:0000013
intersection_of: UBERON:0002464 ! nerve trunk
intersection_of: part_of UBERON:0000013 ! sympathetic nervous system
relationship: part_of UBERON:0000013 ! sympathetic nervous system
[Term]
id: UBERON:0004296
name: respiratory system lymphatic vessel smooth muscle
def: "A lymphatic vessel smooth muscle that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "smooth muscle of lymph vessel of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001826
is_a: UBERON:0004225 ! respiratory system smooth muscle
is_a: UBERON:0004232 ! lymphatic vessel smooth muscle
relationship: part_of UBERON:0003456
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0003456 ! respiratory system lymphatic vessel
relationship: part_of UBERON:0003456 ! respiratory system lymphatic vessel
[Term]
id: UBERON:0004297
name: respiratory system blood vessel smooth muscle
def: "A blood vessel smooth muscle that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "smooth muscle tissue of blood vessel of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001806
is_a: UBERON:0004225 ! respiratory system smooth muscle
is_a: UBERON:0004237 ! blood vessel smooth muscle
relationship: part_of UBERON:0003504
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0003504 ! respiratory system blood vessel
relationship: part_of UBERON:0003504 ! respiratory system blood vessel
[Term]
id: UBERON:0004300
name: distal phalanx
def: "Terminal phalanx located at the tip of the digits." [Wikipedia:Distal_phalanges]
comment: Taxon notes: In human anatomy, the distal phalanges of the four fingers and toes articulate proximally with the intermediate phalanges at the distal interphalangeal joints (DIP); in the thumb and big toe, with only two phalanges, the distal phalanges articulate proximally with the proximal phalanges. The distal phalanges carry and shape nails and claws and are therefore occasionally referred to as the ungual phalanges. The distal phalanges are cone-shaped in most mammals, including most primates, but relatively wide and flat in humans. AO notes:
synonym: "Phalanx distalis" RELATED LATIN [Wikipedia:Distal_phalanges]
synonym: "phalanx distalis" EXACT [Wikipedia:Distal_phalanges]
synonym: "terminal phalanx" EXACT [AAO:0010676]
synonym: "ungual phalanx" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=67679]
xref: AAO:0010676
xref: http://upload.wikimedia.org/wikipedia/commons/a/ab/Scheme_human_hand_bones-en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Scheme_human_hand_bones-en.svg/200px-Scheme_human_hand_bones-en.svg.png
xref: MA:0002914
xref: SCTID:299711006
is_a: UBERON:0003221 ! phalanx
relationship: proximally_connected_to UBERON:0004301
intersection_of: UBERON:0003221 ! phalanx
intersection_of: proximally_connected_to UBERON:0004301 ! middle phalanx
relationship: part_of UBERON:0009551 ! distal segment of digit
relationship: proximally_connected_to UBERON:0004301 ! middle phalanx
[Term]
id: UBERON:0004301
name: middle phalanx
def: "A phalanx located between proximal and distal phalanges[CJM]. Intermediate phalanges are bones found in the limbs of most vertebrates. In humans, they are the bones of the finger and toe which lie in the middle, between the two wrinkly joints. The thumb and big toe do not have intermediate phalanges. In most other vertebrates, they have a corresponding place in their limbs, whether they be paw, wing, hoof or fin[WP]." [Wikipedia:Intermediate_phalanges]
comment: Taxon notes: in some groups such as whales, there are multiple intermediate phalanges. Editors note: consider using numbering system, and axioms to the effect that there is a single middle phalanx per finger in humans. This should perhaps be renamed 'intermediate phalanx', leaving the term middle phalanx open for the specific intermediate phalanx of a 3-phalanx digit
synonym: "intermediate phalanx" EXACT []
synonym: "medial phalanx" RELATED []
synonym: "penultimate phalanx" RELATED [AAO:0010677]
xref: AAO:0010677
xref: MA:0002915
xref: SCTID:299710007
is_a: UBERON:0003221 ! phalanx
relationship: distally_connected_to UBERON:0003221
relationship: proximally_connected_to UBERON:0003221
intersection_of: UBERON:0003221 ! phalanx
intersection_of: distally_connected_to UBERON:0003221 ! phalanx
intersection_of: proximally_connected_to UBERON:0003221 ! phalanx
relationship: distally_connected_to UBERON:0003221 ! phalanx
relationship: distally_connected_to UBERON:0004300 {notes="human and mouse", gci_relation="part_of", gci_filler="NCBITaxon:314146"} ! distal phalanx
relationship: proximally_connected_to UBERON:0003221 ! phalanx
relationship: proximally_connected_to UBERON:0004302 {notes="human and mouse", gci_relation="part_of", gci_filler="NCBITaxon:314146"} ! proximal phalanx
relationship: transitively_distally_connected_to UBERON:0004300 ! distal phalanx
relationship: transitively_proximally_connected_to UBERON:0004302 ! proximal phalanx
[Term]
id: UBERON:0004302
name: proximal phalanx
def: "Proximal-most phalanx within a digit[CJM]. Proximal phalanges are bones found in the limbs of most vertebrates. In humans, they are the bones at the base of a toe or finger, the prominent, knobby ends of which are often called the knuckles. In other vertebrates, proximal phalanges have a similar placement in the corresponding limbs, be they paw, wing or fin. In many species, they are the longest and thickest phalanx ('finger' bone)." [Wikipedia:Proximal_phalanges]
synonym: "proximal-most phalanx" EXACT [AAO:0010680]
xref: AAO:0010680
xref: MA:0002916
xref: SCTID:299708005
property_value: "phalanx_number" "1" xsd:nonNegativeInteger
is_a: UBERON:0003221 ! phalanx
relationship: connected_to UBERON:0003821
intersection_of: UBERON:0003221 ! phalanx
intersection_of: connected_to UBERON:0003821 ! metacarpal/metatarsal bone
relationship: connected_to UBERON:0003821 ! metacarpal/metatarsal bone
[Term]
id: UBERON:0004311
name: distal phalanx of hand digit 2
def: "A distal phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd digit of hand distal phalanx" EXACT [OBOL:automatic]
synonym: "2nd finger distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 2nd digit of hand" EXACT [OBOL:automatic]
synonym: "distal phalanx of 2nd finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of index finger" EXACT [FMA:23946]
synonym: "distal phalanx of second digit of hand" EXACT [FMA:23946]
synonym: "distal phalanx of second finger" EXACT [OBOL:automatic]
synonym: "hand digit 2 distal phalanx" EXACT [OBOL:automatic]
synonym: "second distal phalanx of hand" EXACT [FMA:23946]
synonym: "second finger distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23946
xref: SCTID:361784003
is_a: UBERON:0003636 ! hand digit 2 phalanx
is_a: UBERON:0003865 ! distal phalanx of finger
relationship: part_of UBERON:0003622
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003622 ! hand digit 2
relationship: part_of UBERON:0003622 ! hand digit 2
relationship: proximally_connected_to UBERON:0004320 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="shoge-lite"} ! middle phalanx of hand digit 2
[Term]
id: UBERON:0004312
name: distal phalanx of hand digit 3
def: "A distal phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd digit of hand distal phalanx" EXACT [OBOL:automatic]
synonym: "3rd finger distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 3rd digit of hand" EXACT [OBOL:automatic]
synonym: "distal phalanx of 3rd finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of middle finger" EXACT [FMA:23947]
synonym: "distal phalanx of third digit of hand" EXACT [FMA:23947]
synonym: "distal phalanx of third finger" EXACT [OBOL:automatic]
synonym: "hand digit 3 distal phalanx" EXACT [OBOL:automatic]
synonym: "third distal phalanx of hand" EXACT [FMA:23947]
synonym: "third finger distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23947
xref: SCTID:361786001
is_a: UBERON:0003637 ! hand digit 3 phalanx
is_a: UBERON:0003865 ! distal phalanx of finger
relationship: part_of UBERON:0003623
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003623 ! hand digit 3
relationship: part_of UBERON:0003623 ! hand digit 3
relationship: proximally_connected_to UBERON:0004321 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="shoge-lite"} ! middle phalanx of hand digit 3
[Term]
id: UBERON:0004313
name: distal phalanx of hand digit 4
def: "A distal phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic]
synonym: "4th digit of hand distal phalanx" EXACT [OBOL:automatic]
synonym: "4th finger distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 4th digit of hand" EXACT [OBOL:automatic]
synonym: "distal phalanx of 4th finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of fourth digit of hand" EXACT [FMA:23948]
synonym: "distal phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of ring finger" EXACT [FMA:23948]
synonym: "fourth distal phalanx of hand" EXACT [FMA:23948]
synonym: "fourth finger distal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 4 distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23948
xref: SCTID:361788000
is_a: UBERON:0003638 ! hand digit 4 phalanx
is_a: UBERON:0003865 ! distal phalanx of finger
relationship: part_of UBERON:0003624
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003624 ! hand digit 4
relationship: part_of UBERON:0003624 ! hand digit 4
relationship: proximally_connected_to UBERON:0004322 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="shoge-lite"} ! middle phalanx of hand digit 4
[Term]
id: UBERON:0004314
name: distal phalanx of hand digit 5
def: "A distal phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic]
synonym: "5th digit of hand distal phalanx" EXACT [OBOL:automatic]
synonym: "5th finger distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 5th digit of hand" EXACT [OBOL:automatic]
synonym: "distal phalanx of 5th finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of fifth digit of hand" EXACT [FMA:23949]
synonym: "distal phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of little finger" EXACT [FMA:23949]
synonym: "fifth distal phalanx of hand" EXACT [FMA:23949]
synonym: "fifth finger distal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 5 distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23949
xref: SCTID:361790004
is_a: UBERON:0003639 ! hand digit 5 phalanx
is_a: UBERON:0003865 ! distal phalanx of finger
relationship: part_of UBERON:0003625
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003625 ! hand digit 5
relationship: part_of UBERON:0003625 ! hand digit 5
relationship: proximally_connected_to UBERON:0004323 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="shoge-lite"} ! middle phalanx of hand digit 5
[Term]
id: UBERON:0004315
name: distal phalanx of foot digit 1
def: "A distal phalanx that is part of a foot digit 1 [Obol]." [OBOL:automatic]
synonym: "distal phalanx of big toe" EXACT [FMA:32627]
synonym: "distal phalanx of first digit of foot" EXACT [FMA:32627]
synonym: "distal phalanx of foot digit 1" EXACT [OBOL:automatic]
synonym: "distal phalanx of great toe" EXACT [FMA:32627]
synonym: "distal phalanx of hallux" EXACT [OBOL:automatic]
synonym: "first distal phalanx of foot" EXACT [FMA:32627]
synonym: "foot digit 1 distal phalanx" EXACT [OBOL:automatic]
synonym: "hallux distal phalanx" EXACT [OBOL:automatic]
xref: FMA:32627
xref: SCTID:361799003
is_a: UBERON:0003640 ! foot digit 1 phalanx
is_a: UBERON:0003867 ! distal phalanx of toe
relationship: part_of UBERON:0003631
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003631 ! foot digit 1
relationship: part_of UBERON:0003631 ! foot digit 1
relationship: proximally_connected_to UBERON:0004332 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="shoge-lite"} ! proximal phalanx of foot digit 1
[Term]
id: UBERON:0004316
name: distal phalanx of foot digit 2
def: "A distal phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd toe distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 2nd toe" EXACT [OBOL:automatic]
synonym: "distal phalanx of foot digit 2" EXACT [OBOL:automatic]
synonym: "distal phalanx of second digit of foot" EXACT [FMA:32628]
synonym: "distal phalanx of second toe" EXACT [FMA:32628]
synonym: "foot digit 2 distal phalanx" EXACT [OBOL:automatic]
synonym: "second distal phalanx of foot" EXACT [FMA:32628]
xref: FMA:32628
xref: SCTID:361801000
is_a: UBERON:0003641 ! foot digit 2 phalanx
is_a: UBERON:0003867 ! distal phalanx of toe
relationship: part_of UBERON:0003632
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003632 ! foot digit 2
relationship: part_of UBERON:0003632 ! foot digit 2
relationship: proximally_connected_to UBERON:0004324 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="shoge-lite"} ! middle phalanx of foot digit 2
[Term]
id: UBERON:0004317
name: distal phalanx of foot digit 3
def: "A distal phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd toe distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 3rd toe" EXACT [OBOL:automatic]
synonym: "distal phalanx of foot digit 3" EXACT [OBOL:automatic]
synonym: "distal phalanx of third digit of foot" EXACT [FMA:32629]
synonym: "distal phalanx of third toe" EXACT [FMA:32629]
synonym: "foot digit 3 distal phalanx" EXACT [OBOL:automatic]
synonym: "third distal phalanx of foot" EXACT [FMA:32629]
xref: FMA:32629
xref: SCTID:361803002
is_a: UBERON:0003642 ! foot digit 3 phalanx
is_a: UBERON:0003867 ! distal phalanx of toe
relationship: part_of UBERON:0003633
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003633 ! foot digit 3
relationship: part_of UBERON:0003633 ! foot digit 3
relationship: proximally_connected_to UBERON:0004325 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="shoge-lite"} ! middle phalanx of foot digit 3
[Term]
id: UBERON:0004318
name: distal phalanx of foot digit 4
def: "A distal phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic]
synonym: "4th toe distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 4th toe" EXACT [OBOL:automatic]
synonym: "distal phalanx of foot digit 4" EXACT [OBOL:automatic]
synonym: "distal phalanx of fourth digit of foot" EXACT [FMA:32630]
synonym: "distal phalanx of fourth toe" EXACT [FMA:32630]
synonym: "foot digit 4 distal phalanx" EXACT [OBOL:automatic]
synonym: "fourth distal phalanx of foot" EXACT [FMA:32630]
xref: FMA:32630
xref: SCTID:361805009
is_a: UBERON:0003862 ! foot digit 4 phalanx
is_a: UBERON:0003867 ! distal phalanx of toe
relationship: part_of UBERON:0003634
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003634 ! foot digit 4
relationship: part_of UBERON:0003634 ! foot digit 4
relationship: proximally_connected_to UBERON:0004326 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="shoge-lite"} ! middle phalanx of foot digit 4
[Term]
id: UBERON:0004319
name: distal phalanx of foot digit 5
def: "A distal phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic]
synonym: "5th toe distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 5th toe" EXACT [OBOL:automatic]
synonym: "distal phalanx of fifth digit of foot" EXACT [FMA:32631]
synonym: "distal phalanx of fifth toe" EXACT [FMA:32631]
synonym: "distal phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "distal phalanx of little toe" EXACT [FMA:32631]
synonym: "fifth distal phalanx of foot" EXACT [FMA:32631]
synonym: "foot digit 5 distal phalanx" EXACT [OBOL:automatic]
xref: FMA:32631
xref: SCTID:10770001
is_a: UBERON:0003863 ! foot digit 5 phalanx
is_a: UBERON:0003867 ! distal phalanx of toe
relationship: part_of UBERON:0003635
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003635 ! foot digit 5
relationship: part_of UBERON:0003635 ! foot digit 5
relationship: proximally_connected_to UBERON:0004327 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="shoge-lite"} ! middle phalanx of foot digit 5
[Term]
id: UBERON:0004320
name: middle phalanx of hand digit 2
def: "A middle phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd digit of hand intermediate phalanx" EXACT [OBOL:automatic]
synonym: "2nd digit of hand middle phalanx" EXACT [OBOL:automatic]
synonym: "2nd finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "2nd finger middle phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 2 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 2 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 2nd digit of hand" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 2nd finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of hand digit 2" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of second finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of 2nd digit of hand" EXACT [OBOL:automatic]
synonym: "middle phalanx of 2nd finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of index finger" EXACT [FMA:23933]
synonym: "middle phalanx of second digit of hand" EXACT [FMA:23933]
synonym: "middle phalanx of second finger" EXACT [OBOL:automatic]
synonym: "second finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "second finger middle phalanx" EXACT [OBOL:automatic]
synonym: "second middle phalanx of hand" EXACT [FMA:23933]
xref: FMA:23933
xref: SCTID:263407002
is_a: UBERON:0003636 ! hand digit 2 phalanx
is_a: UBERON:0003864 ! middle phalanx of finger
relationship: part_of UBERON:0003622
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003622 ! hand digit 2
relationship: distally_connected_to UBERON:0004311 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! distal phalanx of hand digit 2
relationship: part_of UBERON:0003622 ! hand digit 2
relationship: proximally_connected_to UBERON:0004328 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! proximal phalanx of hand digit 2
[Term]
id: UBERON:0004321
name: middle phalanx of hand digit 3
def: "A middle phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd digit of hand intermediate phalanx" EXACT [OBOL:automatic]
synonym: "3rd digit of hand middle phalanx" EXACT [OBOL:automatic]
synonym: "3rd finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "3rd finger middle phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 3 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 3 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 3rd digit of hand" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 3rd finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of hand digit 3" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of third finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of 3rd digit of hand" EXACT [OBOL:automatic]
synonym: "middle phalanx of 3rd finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of middle finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of third digit of hand" EXACT [FMA:23934]
synonym: "middle phalanx of third finger" EXACT [OBOL:automatic]
synonym: "third finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "third finger middle phalanx" EXACT [OBOL:automatic]
synonym: "third middle phalanx of hand" EXACT [FMA:23934]
xref: FMA:23934
xref: SCTID:263408007
is_a: UBERON:0003637 ! hand digit 3 phalanx
is_a: UBERON:0003864 ! middle phalanx of finger
relationship: part_of UBERON:0003623
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003623 ! hand digit 3
relationship: distally_connected_to UBERON:0004312 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! distal phalanx of hand digit 3
relationship: part_of UBERON:0003623 ! hand digit 3
relationship: proximally_connected_to UBERON:0004329 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! proximal phalanx of hand digit 3
[Term]
id: UBERON:0004322
name: middle phalanx of hand digit 4
def: "A middle phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic]
synonym: "4th digit of hand intermediate phalanx" EXACT [OBOL:automatic]
synonym: "4th digit of hand middle phalanx" EXACT [OBOL:automatic]
synonym: "4th finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "4th finger middle phalanx" EXACT [OBOL:automatic]
synonym: "fourth finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "fourth finger middle phalanx" EXACT [OBOL:automatic]
synonym: "fourth middle phalanx of hand" EXACT [FMA:23935]
synonym: "hand digit 4 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 4 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 4th digit of hand" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 4th finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of hand digit 4" EXACT [OBOL:automatic]
synonym: "middle phalanx of 4th digit of hand" EXACT [OBOL:automatic]
synonym: "middle phalanx of 4th finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of fourth digit of hand" EXACT [FMA:23935]
synonym: "middle phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of ring finger" EXACT [OBOL:automatic]
xref: FMA:23935
xref: SCTID:263409004
is_a: UBERON:0003638 ! hand digit 4 phalanx
is_a: UBERON:0003864 ! middle phalanx of finger
relationship: part_of UBERON:0003624
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003624 ! hand digit 4
relationship: distally_connected_to UBERON:0004313 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! distal phalanx of hand digit 4
relationship: part_of UBERON:0003624 ! hand digit 4
relationship: proximally_connected_to UBERON:0004330 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! proximal phalanx of hand digit 4
[Term]
id: UBERON:0004323
name: middle phalanx of hand digit 5
def: "A middle phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic]
synonym: "5th digit of hand intermediate phalanx" EXACT [OBOL:automatic]
synonym: "5th digit of hand middle phalanx" EXACT [OBOL:automatic]
synonym: "5th finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "5th finger middle phalanx" EXACT [OBOL:automatic]
synonym: "fifth finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "fifth finger middle phalanx" EXACT [OBOL:automatic]
synonym: "fifth middle phalanx of hand" EXACT [FMA:23936]
synonym: "hand digit 5 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 5 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 5th digit of hand" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 5th finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of hand digit 5" EXACT [OBOL:automatic]
synonym: "middle phalanx of 5th digit of hand" EXACT [OBOL:automatic]
synonym: "middle phalanx of 5th finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of fifth digit of hand" EXACT [FMA:23936]
synonym: "middle phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of little finger" EXACT [OBOL:automatic]
xref: FMA:23936
xref: SCTID:263410009
is_a: UBERON:0003639 ! hand digit 5 phalanx
is_a: UBERON:0003864 ! middle phalanx of finger
relationship: part_of UBERON:0003625
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003625 ! hand digit 5
relationship: distally_connected_to UBERON:0004314 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! distal phalanx of hand digit 5
relationship: part_of UBERON:0003625 ! hand digit 5
relationship: proximally_connected_to UBERON:0004331 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! proximal phalanx of hand digit 5
[Term]
id: UBERON:0004324
name: middle phalanx of foot digit 2
def: "A middle phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd toe intermediate phalanx" EXACT [OBOL:automatic]
synonym: "2nd toe middle phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 2 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 2 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 2nd toe" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of foot digit 2" EXACT [OBOL:automatic]
synonym: "middle phalanx of 2nd toe" EXACT [OBOL:automatic]
synonym: "middle phalanx of foot digit 2" EXACT [OBOL:automatic]
synonym: "middle phalanx of second digit of foot" EXACT [FMA:32623]
synonym: "middle phalanx of second toe" EXACT [FMA:32623]
synonym: "second middle phalanx of foot" EXACT [FMA:32623]
xref: FMA:32623
xref: SCTID:182152006
is_a: UBERON:0003641 ! foot digit 2 phalanx
is_a: UBERON:0003866 ! middle phalanx of toe
relationship: part_of UBERON:0003632
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003632 ! foot digit 2
relationship: distally_connected_to UBERON:0004316 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! distal phalanx of foot digit 2
relationship: part_of UBERON:0003632 ! foot digit 2
relationship: proximally_connected_to UBERON:0004333 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! proximal phalanx of foot digit 2
[Term]
id: UBERON:0004325
name: middle phalanx of foot digit 3
def: "A middle phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd toe intermediate phalanx" EXACT [OBOL:automatic]
synonym: "3rd toe middle phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 3 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 3 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 3rd toe" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of foot digit 3" EXACT [OBOL:automatic]
synonym: "middle phalanx of 3rd toe" EXACT [OBOL:automatic]
synonym: "middle phalanx of foot digit 3" EXACT [OBOL:automatic]
synonym: "middle phalanx of third digit of foot" EXACT [FMA:32624]
synonym: "middle phalanx of third toe" EXACT [FMA:32624]
synonym: "third middle phalanx of foot" EXACT [FMA:32624]
xref: FMA:32624
xref: SCTID:182154007
is_a: UBERON:0003642 ! foot digit 3 phalanx
is_a: UBERON:0003866 ! middle phalanx of toe
relationship: part_of UBERON:0003633
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003633 ! foot digit 3
relationship: distally_connected_to UBERON:0004317 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! distal phalanx of foot digit 3
relationship: part_of UBERON:0003633 ! foot digit 3
relationship: proximally_connected_to UBERON:0004334 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! proximal phalanx of foot digit 3
[Term]
id: UBERON:0004326
name: middle phalanx of foot digit 4
def: "A middle phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic]
synonym: "4th toe intermediate phalanx" EXACT [OBOL:automatic]
synonym: "4th toe middle phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 4 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 4 middle phalanx" EXACT [OBOL:automatic]
synonym: "fourth middle phalanx of foot" EXACT [FMA:32625]
synonym: "intermediate phalanx of 4th toe" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of foot digit 4" EXACT [OBOL:automatic]
synonym: "middle phalanx of 4th toe" EXACT [OBOL:automatic]
synonym: "middle phalanx of foot digit 4" EXACT [OBOL:automatic]
synonym: "middle phalanx of fourth digit of foot" EXACT [FMA:32625]
synonym: "middle phalanx of fourth toe" EXACT [OBOL:automatic]
xref: FMA:32625
xref: SCTID:182156009
is_a: UBERON:0003862 ! foot digit 4 phalanx
is_a: UBERON:0003866 ! middle phalanx of toe
relationship: part_of UBERON:0003634
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003634 ! foot digit 4
relationship: distally_connected_to UBERON:0004318 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! distal phalanx of foot digit 4
relationship: part_of UBERON:0003634 ! foot digit 4
relationship: proximally_connected_to UBERON:0004335 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! proximal phalanx of foot digit 4
[Term]
id: UBERON:0004327
name: middle phalanx of foot digit 5
def: "A middle phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic]
synonym: "5th toe intermediate phalanx" EXACT [OBOL:automatic]
synonym: "5th toe middle phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 5 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 5 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 5th toe" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "middle phalanx of 5th toe" EXACT [OBOL:automatic]
synonym: "middle phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "middle phalanx of little toe" EXACT [OBOL:automatic]
xref: FMA:230984
xref: SCTID:182158005
is_a: UBERON:0003863 ! foot digit 5 phalanx
is_a: UBERON:0003866 ! middle phalanx of toe
relationship: part_of UBERON:0003635
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003635 ! foot digit 5
relationship: distally_connected_to UBERON:0004319 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! distal phalanx of foot digit 5
relationship: part_of UBERON:0003635 ! foot digit 5
relationship: proximally_connected_to UBERON:0004336 {gci_relation="part_of", gci_filler="NCBITaxon:314146", source="shoge-lite"} ! proximal phalanx of foot digit 5
[Term]
id: UBERON:0004328
name: proximal phalanx of hand digit 2
def: "A proximal phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd digit of hand proximal phalanx" EXACT [OBOL:automatic]
synonym: "2nd finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 2 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 2nd digit of hand" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 2nd finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of index finger" EXACT [FMA:23919]
synonym: "proximal phalanx of second digit of hand" EXACT [FMA:23919]
synonym: "proximal phalanx of second finger" EXACT [OBOL:automatic]
synonym: "second finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "second proximal phalanx of hand" EXACT [FMA:23919]
xref: FMA:23919
xref: SCTID:263403003
is_a: UBERON:0002234 ! proximal phalanx of finger
is_a: UBERON:0003636 ! hand digit 2 phalanx
relationship: part_of UBERON:0003622
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003622 ! hand digit 2
relationship: part_of UBERON:0003622 ! hand digit 2
relationship: proximally_connected_to UBERON:0003646 ! metacarpal bone of digit 2
[Term]
id: UBERON:0004329
name: proximal phalanx of hand digit 3
def: "A proximal phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd digit of hand proximal phalanx" EXACT [OBOL:automatic]
synonym: "3rd finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 3 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 3rd digit of hand" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 3rd finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of middle finger" EXACT [FMA:23920]
synonym: "proximal phalanx of third digit of hand" EXACT [FMA:23920]
synonym: "proximal phalanx of third finger" EXACT [OBOL:automatic]
synonym: "third finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "third proximal phalanx of hand" EXACT [FMA:23920]
xref: FMA:23920
xref: SCTID:263404009
is_a: UBERON:0002234 ! proximal phalanx of finger
is_a: UBERON:0003637 ! hand digit 3 phalanx
relationship: part_of UBERON:0003623
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003623 ! hand digit 3
relationship: part_of UBERON:0003623 ! hand digit 3
relationship: proximally_connected_to UBERON:0003647 ! metacarpal bone of digit 3
[Term]
id: UBERON:0004330
name: proximal phalanx of hand digit 4
def: "A proximal phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic]
synonym: "4th digit of hand proximal phalanx" EXACT [OBOL:automatic]
synonym: "4th finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "fourth finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "fourth proximal phalanx of hand" EXACT [FMA:23921]
synonym: "hand digit 4 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 4th digit of hand" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 4th finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of fourth digit of hand" EXACT [FMA:23921]
synonym: "proximal phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of ring finger" EXACT [FMA:23921]
xref: FMA:23921
xref: SCTID:263405005
is_a: UBERON:0002234 ! proximal phalanx of finger
is_a: UBERON:0003638 ! hand digit 4 phalanx
relationship: part_of UBERON:0003624
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003624 ! hand digit 4
relationship: part_of UBERON:0003624 ! hand digit 4
relationship: proximally_connected_to UBERON:0003648 ! metacarpal bone of digit 4
[Term]
id: UBERON:0004331
name: proximal phalanx of hand digit 5
def: "A proximal phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic]
synonym: "5th digit of hand proximal phalanx" EXACT [OBOL:automatic]
synonym: "5th finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "fifth finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "fifth proximal phalanx of hand" EXACT [FMA:23922]
synonym: "hand digit 5 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 5th digit of hand" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 5th finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of fifth digit of hand" EXACT [FMA:23922]
synonym: "proximal phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of little finger" EXACT [FMA:23922]
xref: FMA:23922
xref: SCTID:263406006
is_a: UBERON:0002234 ! proximal phalanx of finger
is_a: UBERON:0003639 ! hand digit 5 phalanx
relationship: part_of UBERON:0003625
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003625 ! hand digit 5
relationship: part_of UBERON:0003625 ! hand digit 5
relationship: proximally_connected_to UBERON:0003649 ! metacarpal bone of digit 5
[Term]
id: UBERON:0004332
name: proximal phalanx of foot digit 1
def: "A proximal phalanx that is part of a foot digit 1 [Obol]." [OBOL:automatic]
synonym: "foot digit 1 proximal phalanx" EXACT [OBOL:automatic]
synonym: "hallux proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of big toe" EXACT [FMA:43252]
synonym: "proximal phalanx of foot digit 1" EXACT [OBOL:automatic]
synonym: "proximal phalanx of great toe" EXACT [FMA:43252]
synonym: "proximal phalanx of hallux" EXACT [OBOL:automatic]
xref: FMA:43252
xref: SCTID:182150003
is_a: UBERON:0003640 ! foot digit 1 phalanx
is_a: UBERON:0003868 ! proximal phalanx of toe
relationship: part_of UBERON:0003631
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003631 ! foot digit 1
relationship: part_of UBERON:0003631 ! foot digit 1
relationship: proximally_connected_to UBERON:0003650 ! metatarsal bone of digit 1
[Term]
id: UBERON:0004333
name: proximal phalanx of foot digit 2
def: "A proximal phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd toe proximal phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 2 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 2nd toe" EXACT [OBOL:automatic]
synonym: "proximal phalanx of foot digit 2" EXACT [OBOL:automatic]
synonym: "proximal phalanx of second digit of foot" EXACT [FMA:32618]
synonym: "proximal phalanx of second toe" EXACT [FMA:32618]
synonym: "second proximal phalanx of foot" EXACT [FMA:32618]
xref: FMA:32618
xref: SCTID:182151004
is_a: UBERON:0003641 ! foot digit 2 phalanx
is_a: UBERON:0003868 ! proximal phalanx of toe
relationship: part_of UBERON:0003632
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003632 ! foot digit 2
relationship: part_of UBERON:0003632 ! foot digit 2
relationship: proximally_connected_to UBERON:0003651 ! metatarsal bone of digit 2
[Term]
id: UBERON:0004334
name: proximal phalanx of foot digit 3
def: "A proximal phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd toe proximal phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 3 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 3rd toe" EXACT [OBOL:automatic]
synonym: "proximal phalanx of foot digit 3" EXACT [OBOL:automatic]
synonym: "proximal phalanx of third digit of foot" EXACT [FMA:32619]
synonym: "proximal phalanx of third toe" EXACT [FMA:32619]
synonym: "third proximal phalanx of foot" EXACT [FMA:32619]
xref: FMA:32619
xref: SCTID:182153001
is_a: UBERON:0003642 ! foot digit 3 phalanx
is_a: UBERON:0003868 ! proximal phalanx of toe
relationship: part_of UBERON:0003633
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003633 ! foot digit 3
relationship: part_of UBERON:0003633 ! foot digit 3
relationship: proximally_connected_to UBERON:0003652 ! metatarsal bone of digit 3
[Term]
id: UBERON:0004335
name: proximal phalanx of foot digit 4
def: "A proximal phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic]
synonym: "4th toe proximal phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 4 proximal phalanx" EXACT [OBOL:automatic]
synonym: "fourth proximal phalanx of foot" EXACT [FMA:32620]
synonym: "proximal phalanx of 4th toe" EXACT [OBOL:automatic]
synonym: "proximal phalanx of foot digit 4" EXACT [OBOL:automatic]
synonym: "proximal phalanx of fourth digit of foot" EXACT [FMA:32620]
synonym: "proximal phalanx of fourth toe" EXACT [FMA:32620]
xref: FMA:32620
xref: SCTID:182155008
is_a: UBERON:0003862 ! foot digit 4 phalanx
is_a: UBERON:0003868 ! proximal phalanx of toe
relationship: part_of UBERON:0003634
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003634 ! foot digit 4
relationship: part_of UBERON:0003634 ! foot digit 4
relationship: proximally_connected_to UBERON:0003653 ! metatarsal bone of digit 4
[Term]
id: UBERON:0004336
name: proximal phalanx of foot digit 5
def: "A proximal phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic]
synonym: "5th toe proximal phalanx" EXACT [OBOL:automatic]
synonym: "fifth proximal phalanx of foot" EXACT [FMA:32621]
synonym: "foot digit 5 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 5th toe" EXACT [OBOL:automatic]
synonym: "proximal phalanx of fifth digit of foot" EXACT [FMA:32621]
synonym: "proximal phalanx of fifth toe" EXACT [FMA:32621]
synonym: "proximal phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "proximal phalanx of little toe" EXACT [OBOL:automatic]
xref: FMA:32621
xref: SCTID:182157000
is_a: UBERON:0003863 ! foot digit 5 phalanx
is_a: UBERON:0003868 ! proximal phalanx of toe
relationship: part_of UBERON:0003635
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003635 ! foot digit 5
relationship: part_of UBERON:0003635 ! foot digit 5
relationship: proximally_connected_to UBERON:0003654 ! metatarsal bone of digit 5
[Term]
id: UBERON:0004337
name: distal phalanx of hand digit 1
def: "A distal phalanx that is part of a hand digit 1 [Obol]." [OBOL:automatic]
comment: Taxon notes: The human pollical distal phalanx (PDP) has a pronounced insertion for the flexor pollicis longus (asymmetric towards the radial side), an ungual fossa, and a pair of dissymmetric ungual spines (the ulnar being more prominent). This asymmetry is necessary to ensure that the thumb pulp is always facing the pulps of the other digits, an osteological configuration which provides the maximum contact surface with held objects.[WP]
synonym: "distal phalanx of first digit of hand" EXACT [FMA:23945]
synonym: "distal phalanx of thumb" EXACT [OBOL:automatic]
synonym: "first distal phalanx of hand" EXACT [FMA:23945]
synonym: "PDP" EXACT [Wikipedia:Distal_phalanges#Thumb]
synonym: "pollical distal phalanx" EXACT [Wikipedia:Distal_phalanges#Thumb]
synonym: "thumb distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23945
xref: SCTID:182007006
is_a: UBERON:0003620 ! hand digit 1 phalanx
is_a: UBERON:0003865 ! distal phalanx of finger
relationship: part_of UBERON:0001463
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0001463 ! hand digit 1
relationship: part_of UBERON:0001463 ! hand digit 1
relationship: proximally_connected_to UBERON:0004338 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="shoge-lite"} ! proximal phalanx of hand digit 1
[Term]
id: UBERON:0004338
name: proximal phalanx of hand digit 1
def: "A proximal phalanx that is part of a hand digit 1 [Obol]." [OBOL:automatic]
synonym: "first proximal phalanx of hand" EXACT [FMA:23918]
synonym: "proximal phalanx of first digit of hand" EXACT [FMA:23918]
synonym: "proximal phalanx of thumb" EXACT [OBOL:automatic]
synonym: "thumb proximal" EXACT [OBOL:automatic]
xref: FMA:23918
xref: SCTID:181992006
is_a: UBERON:0002234 ! proximal phalanx of finger
is_a: UBERON:0003620 ! hand digit 1 phalanx
relationship: part_of UBERON:0001463
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0001463 ! hand digit 1
relationship: part_of UBERON:0001463 ! hand digit 1
relationship: proximally_connected_to UBERON:0003645 ! metacarpal bone of digit 1
[Term]
id: UBERON:0004339
name: vault of skull
def: "Upper part of skull, consisting of parietals, frontals, post-parietals, and in some species the squamosal and a portion of the alisphenoid" [MP:0000076, PMID:11523816, Wikipedia:Calvaria_(skull)]
comment: Editor notes: We follow PMID:11523816 (Morriss-Kay) in defining the components of the skull vault. Note that there is a conflict with Kardong; e.g. in fig 7.10, Kardong places the squamosal in the temporal series. We cannot place the vault as entirely part of the dermatocranium as it has a small splanchnocranium contribution and a sclerotomal contribution. Terminology notes. we include calvarium as a synonym, but Gray's Anatomy's list includes the Ethmoid and Sphenoid bone in the Calvaria. Some books state that calvaria consists of just the frontal bone, parietal bone, temporal bone, and occipital bone. Note vault may not be precisely equivalent to calvaria
synonym: "calva" EXACT [FMA:52800]
synonym: "calvaria" RELATED PLURAL [ZFA:0005606]
synonym: "calvarium" RELATED []
synonym: "skull vault" EXACT []
synonym: "skullcap" RELATED [ZFA:0005606]
xref: EHDAA2:0002167
xref: EHDAA:9538
xref: EMAPA:18016
xref: FMA:52800
xref: ncithesaurus:Skullcap
xref: SCTID:140592008
xref: VHOG:0000331
xref: ZFA:0005606
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: overlaps UBERON:0003113 {notes="small pharyngeal arch and sclerotomal contribution"} ! dermatocranium
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0004340
name: allantois
def: "Allantois (plural allantoides or allantoises) is a part of a developing animal conceptus (which consists of all embryonic and extra-embryonic tissues). It helps the embryo exchange gases and handle liquid waste. The allantois, along with the amnion and chorion (other embryonic membranes), identify humans as amniotes, along with reptiles, dinosaurs, birds, and other mammals. Of the vertebrates, only Ichthyopsidas lack this structure. [WP,unvetted]." [MP:0001726, Wikipedia:Allantois]
comment: a diverticulum of the hindgut endoderm [ISBN10:0073040584 "Vertebrates, Kardong"]
xref: BTO:0000474
xref: EHDAA2:0000113
xref: EMAPA:16084
xref: EMAPA:16107
xref: EMAPA:28547
xref: http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray25.png
xref: MESH:A.16.254.403.147
xref: ncithesaurus:Allantois
xref: RETIRED_EHDAA2:0000114
xref: SCTID:308825007
xref: VHOG:0000738
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005631 ! extraembryonic membrane
is_a: UBERON:0006554 ! urinary system structure
relationship: develops_from UBERON:0000925 {source="ISBN10:0073040584"} ! endoderm
relationship: develops_from UBERON:0004872 {source="ISBN10:0073040584"} ! splanchnic layer of lateral plate mesoderm
relationship: part_of UBERON:0001008 {source="EHDAA2"} ! excretory system
[Term]
id: UBERON:0004341
name: primitive streak
def: "The primitive streak is a structure that forms during the early stages of avian, reptilian and mammalian embryonic development[WP]. the midline ridge of the embryonic epiblast that later develops into mesoderm and endoderm[MP]" [MP:0002231, Wikipedia:Primitive_streak]
comment: AO notes: VHOG includes a very broad grouping here based on PMID:9609826
subset: early_development
xref: EHDAA2:0001525
xref: EHDAA:185
xref: EMAPA:16072
xref: http://upload.wikimedia.org/wikipedia/commons/f/f4/Gray13.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Gray13.png/200px-Gray13.png
xref: ncithesaurus:Primitive_Streak
xref: SCTID:361438007
xref: VHOG:0001202
property_value: "dubious_for_taxon" NCBITaxon:32443
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0002532 ! epiblast
[Term]
id: UBERON:0004344
name: cardinal vein
def: "any of the four veins in the developing vertebrate embryo which run along each side of the vertebral column" [MP:0004783]
xref: AAO:0011022
xref: BTO:0004385
xref: EHDAA2:0000213
xref: EHDAA:1310
xref: EMAPA:16354
xref: ncithesaurus:Cardinal_Vein
xref: SCTID:362860004
xref: VHOG:0001197
xref: XAO:0000052
is_a: UBERON:0001638 ! vein
is_a: UBERON:0005291 ! embryonic tissue
[Term]
id: UBERON:0004345
name: trophectoderm
def: "outermost layer of cells in the blastodermic vesicle, which will develop into the trophoblast layer and then contact the endometrium and take part in establishing the embryo's means of nutrition" [MP:0005028]
subset: early_development
xref: BTO:0001840
xref: EHDAA2:0002091
xref: EHDAA:56
xref: EMAPA:16046
xref: VHOG:0000979
is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure
[Term]
id: UBERON:0004346
name: gubernaculum
alt_id: UBERON:0000452
def: "embryonic structures which begin as undifferentiated mesenchyme attaching to the caudal end of the gonads. The gubernaculum is present only during the development of the urinary and reproductive organs, being replaced by distinct vestiges in males and females[WP]. Enitoinguinal ligaments that, in the male, connect the fetal testis to the developing scrotum, and, in the female, connect the ovaries to the uterus[MP]" [MP:0005149, Wikipedia:Gubernaculum]
comment: WP def is male/female, split term? EMAP is male-specific. vestigial adult in FMA. TODO
synonym: "caudal suspensory ligament" RELATED [EMAPA:19089]
synonym: "Gabernaculum" RELATED LATIN [Wikipedia:Gubernaculum]
synonym: "gubernaculum testis" NARROW []
synonym: "Hunter's gubernaculum" RELATED [BTO:0002813]
xref: http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1138.png
xref: ncithesaurus:Gubernaculum_Testis
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0006590 {source="FMA"} ! vestigial embryonic structure
relationship: attaches_to UBERON:0000991 ! gonad
relationship: develops_from UBERON:0003064 {source="Wikipedia"} ! intermediate mesoderm
relationship: part_of UBERON:0000323 {source="BTO"} ! late embryo
relationship: part_of UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0002358 ! peritoneum
[Term]
id: UBERON:0004347
name: limb bud
def: "the mesenchymal outgrowth on the lateral trunk of the embryo that develops into a limb[MP]." [MP:0005650, Wikipedia:Limb_bud]
comment: induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm
synonym: "gemmae membrorum" RELATED LATIN [Wikipedia:Limb_bud]
synonym: "limb buds" EXACT PLURAL []
synonym: "limbbud" EXACT [GO:0060174]
xref: AAO:0010375
xref: BTO:0001640
xref: GAID:1307
xref: MESH:A.16.254.462
xref: ncithesaurus:Limb_Bud
xref: XAO:0003161
property_value: UBPROP:0000001 "Early outgrowth of presumptive limb.[AAO]" xsd:string
is_a: UBERON:0004357 ! limb/fin bud
relationship: develops_from UBERON:0005733 ! limb field
relationship: develops_into UBERON:0002101 ! limb
relationship: induced_by UBERON:0003081 {source="ISBN:9780878932504"} ! lateral plate mesoderm
[Term]
id: UBERON:0004348
name: optic eminence
def: "the embryonic structure that gives rise to the corneal ectoderm" [MP:0006305]
xref: EHDAA:938
xref: EMAPA:16322
xref: EMAPA:17003
xref: RETIRED_EHDAA2:0001308
xref: VHOG:0001296
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_into UBERON:0000964 ! cornea
[Term]
id: UBERON:0004353
name: female inguinal canal
def: "An inguinal canal that is part of a female organism. Conveys the round ligament + the ilioinguinal nerve.[WP,unvetted]." [MP:0008015, Wikipedia:Inguinal_canal#Contents]
xref: EMAPA:19171
is_a: UBERON:0003702 ! inguinal canal
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000474
intersection_of: UBERON:0003702 ! inguinal canal
intersection_of: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0004354
name: male inguinal canal
def: "An inguinal canal that is part of a male organism. Conveys the spermatic cord and its coverings + the ilioinguinal nerve.[WP,unvetted]." [MP:0008016, Wikipedia:Inguinal_canal#Contents]
xref: EMAPA:26913
is_a: UBERON:0003702 ! inguinal canal
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000079
intersection_of: UBERON:0003702 ! inguinal canal
intersection_of: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0004355
name: podocyte foot process
def: "the footlike extension of podocytes that interdigitate with one another to form the walls of the glomerular capillaries" [MP:0008059]
comment: TODO - submit to GO
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0004356
name: apical ectodermal ridge
def: "multilayered ectodermal region at the distal tip of a limb bud necessary for the proper development of the underlying mesenchyme[MP]. Along with the zone of polarizing activity, it is a crucial organizing region during limb development[WP]." [MP:0001676, Wikipedia:Apical_ectodermal_ridge]
comment: Functions: maintaining mesenchyme in plastic proliferating state; maintaining expression of A-P axis genes; interacting with D-V proteins. Genes: AER induced by Fgf10 in mesenchyme. AER secretes Fgf8, which stimulates mitosis in the mesenchyme causing Fgf10 production - positive feedback loop
synonym: "AER" RELATED [MP:0001676]
synonym: "crista ectodermalis apicalis" RELATED LATIN [Wikipedia:Apical_ectodermal_ridge]
xref: AAO:0010760
xref: http://upload.wikimedia.org/wikipedia/commons/5/56/Limbbuddiagram.jpg
xref: ncithesaurus:Apical_Ectodermal_Ridge
xref: TAO:0002146
xref: XAO:0004121
xref: ZFA:0001702
property_value: UBPROP:0000001 "Distal ectodermal thickening which forms along the anterior-posterior limb axis. Signaling from this region influences proximal-distal patterning of the limb. Structure is missing in some lineages (salamanders, Eleutherodactylus coqui) however morphologically their indistinct distal ectoderm may still be involved in signaling.[AAO]" xsd:string
property_value: UBPROP:0000001 "Proliferative region that is part of the developing fin fold or fin.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass proliferative region (TAO:0000098)[TAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: induced_by UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0004357 ! limb/fin bud
[Term]
id: UBERON:0004357
name: limb/fin bud
comment: Genes: In limb buds of chick and mouse, Shh expression is activated as soon as there is a morphological bud, whereas in S. canicula fin buds, consistent with reported data in other cartilaginous fishes, Shh is transcribed late in fin development[PMID:17187056]
synonym: "paired appendage bud" EXACT []
xref: VHOG:0001258
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0005732 ! limb/fin field
relationship: develops_into UBERON:0004708 ! limb/fin
relationship: has_part UBERON:0004356 ! apical ectodermal ridge
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0004358
name: caput epididymis
def: "the head of the epididymis" [MP:0002660]
comment: Structure notes: The head of the epididymis receives spermatozoa via the efferent ducts of the mediastinum of the testis. It is characterized histologically by a thin myoepithelium. The concentration of the sperm here is dilute[WP]
synonym: "caput" BROAD [MP:0002660]
synonym: "caput epididymidis" RELATED [BTO:0000336]
synonym: "epididymal head" EXACT [FMA:18259]
synonym: "epididymis head" EXACT [FMA:18259]
synonym: "epidymis head" EXACT [FMA:18259]
synonym: "head of epididymis" EXACT [FMA:18259]
synonym: "head of epidymis " EXACT []
xref: BTO:0000336
xref: EMAPA:19291
xref: FMA:18259
xref: MA:0002762
xref: ncithesaurus:Head_of_the_Epididymis
xref: SCTID:362282002
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0004359
name: corpus epididymis
def: "the body of the epididymis" [MP:0002661]
synonym: "body of epididymis" EXACT [FMA:18260]
synonym: "body of epididymis " EXACT [FMA:18260]
synonym: "body of epidymis " EXACT []
synonym: "corpus epididymidis" RELATED [BTO:0000209]
synonym: "epididymal body" EXACT [FMA:18260]
synonym: "epididymis body" EXACT [FMA:18260]
synonym: "epidymis body" EXACT []
xref: BTO:0000209
xref: EMAPA:19293
xref: FMA:18260
xref: MA:0002764
xref: ncithesaurus:Body_of_the_Epididymis
xref: SCTID:279620001
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0004360
name: cauda epididymis
def: "the tail of the epididymis" [MP:0002662]
comment: Structure notes: This has a thicker myoepithelium than the head region, as it is involved in absorbing fluid to make the sperm more concentrated.[WP]
synonym: "cauda epididymidis" EXACT [BTO:0000210]
synonym: "corpus" BROAD [MP:0002662]
synonym: "epididymal cauda" EXACT [BTO:0000210]
synonym: "epididymal tail" EXACT [FMA:18261]
synonym: "epididymis tail" EXACT [FMA:18261]
synonym: "epidymis tail" EXACT []
synonym: "tail of epididymis" EXACT [FMA:18261]
synonym: "tail of epididymis " EXACT [FMA:18261]
synonym: "tail of epidymis " EXACT []
xref: BTO:0000210
xref: EMAPA:19292
xref: FMA:18261
xref: MA:0002763
xref: ncithesaurus:Tail_of_the_Epididymis
xref: SCTID:279621002
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0004361
name: stylohyoid ligament
def: "the fibrous cord that connects the tip of the styloid process of the temporal bone to the lesser horn of the hyoid bone" [MP:0009918, Wikipedia:Stylohyoid_ligament]
synonym: "ligamentum stylohyoideum" EXACT [Wikipedia:Stylohyoid_ligament]
synonym: "ligamentum stylohyoideus" EXACT [Wikipedia:Stylohyoid_ligament]
synonym: "stylo-hyoid ligament" EXACT [MA:0002957]
xref: FMA:72308
xref: MA:0002957
xref: SCTID:66275001
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: connects UBERON:0003960 {source="Wikipedia"} ! styloid process of temporal bone
relationship: connects UBERON:0003998 {source="Wikipedia"} ! hyoid bone lesser horn
relationship: develops_from UBERON:0004368 {source="MP-implied-by-def"} ! Reichert's cartilage
[Term]
id: UBERON:0004362
name: pharyngeal arch 1
def: "First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove." [Wikipedia:First_pharyngeal_arch]
subset: uberon_slim
subset: vertebrate_core
synonym: "1st arch" RELATED [EHDAA2:0000006]
synonym: "1st pharyngeal arch" EXACT []
synonym: "arcus pharyngeus primus" RELATED LATIN [Wikipedia:First_pharyngeal_arch]
synonym: "branchial arch 1" EXACT SENSU []
synonym: "first branchial arch" EXACT SENSU []
synonym: "first pharyngeal arch" EXACT []
synonym: "first visceral arch" EXACT SENSU []
synonym: "mandibular arch" EXACT []
synonym: "visceral arch 1" EXACT SENSU []
xref: AAO:0010364
xref: EHDAA2:0000006
xref: EHDAA:573
xref: EMAPA:16118
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray48.png/200px-Gray48.png
xref: ncithesaurus:First_Pharyngeal_Arch
xref: SCTID:308767008
xref: TAO:0001595
xref: VHOG:0000296
xref: XAO:0000097
xref: ZFA:0001612
property_value: "pharyngeal_arch_number" "1" xsd:nonNegativeInteger
property_value: UBPROP:0000001 "The first of the series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO]" xsd:string
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0004363
name: aortic arch
alt_id: UBERON:0004342
def: "One of a series of paired embryological vascular structures which give rise to several major arteries." [MP:0002672, Wikipedia:Aortic_arches]
comment: Usage notes: Do not confuse with arch of aorta. Editor notes: add specific artery derivatives. Development notes: The third, fourth, and sixth arches, along with the seventh intersegmental arteries and the left dorsal aorta, are the primary contributors to the normal aortic arch and its major thoracic branches. Taxon notes: Number varies - Lampreys have 8, hagfishes 15; only up to 6 appear in embryonic development in most gnathostome fishes and all tetrapods
subset: uberon_slim
subset: vertebrate_core
synonym: "aa. arcuum pharyngeorum" RELATED LATIN [Wikipedia:Aortic_arches]
synonym: "aortic arches" EXACT PLURAL [ZFA:0005004]
synonym: "branchial aortic arches " EXACT PLURAL [ZFIN:ZDB-PUB-080512-6]
synonym: "branchial arch artery" EXACT [EMAPA:16684]
synonym: "embryonic aortic arch artery" EXACT [EMAPA:16684, MP:0002672]
xref: AAO:0010414
xref: EFO:0003695
xref: EHDAA2:0000186
xref: EHDAA:398
xref: EHDAA:7327
xref: EMAPA:16684
xref: http://upload.wikimedia.org/wikipedia/commons/8/84/Gray473.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Gray473.png/200px-Gray473.png
xref: ncithesaurus:Aortic_Arch
xref: TAO:0005004
xref: VHOG:0000122
xref: XAO:0000341
xref: ZFA:0005004
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003351 ! pharyngeal epithelium
is_a: UBERON:0003469 ! respiratory system artery
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007497 ! developing epithelial placode
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0002342 ! neural crest
relationship: develops_into UBERON:0001637 ! artery
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0007303 {source="ZFA"} ! pharyngeal vasculature
relationship: part_of UBERON:0008814 ! pharyngeal system
[Term]
id: UBERON:0004364
name: ectoplacental cone
def: "thickened trophoblast of the blastocyst in rodents that becomes the fetal portion of the placenta" [MP:0001717, PMID:19829370]
comment: Development notes: derivative of the early postimplantation trophoblast, which probably gives rise to the spongiotrophoblast.[PMID:19829370]
xref: BTO:0001715
xref: EMAPA:16059
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000088 ! trophoblast
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0004365
name: vitelline blood vessel
def: "blood vesself of the yolk sac." [MP:0001719]
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001981 ! blood vessel
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010303 ! extraembryonic epithelium
relationship: part_of UBERON:0001040
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001040 ! yolk sac
relationship: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0004366
name: extraembryonic ectoderm
def: "layer of the endoderm of the extraembryonic tissue." [MP:0002583]
comment: Editor note: we make the germ layer relationship develops_from, as currently the germ layers are declared to be purely embryonic. TODO - check. WP:Amnion - In the human embryo the earliest stages of the formation of the amnion have not been observed; in the youngest embryo which has been studied the amnion was already present as a closed sac, and appears in the inner cell-mass as a cavity. This cavity is roofed in by a single stratum of flattened, ectodermal cells, the amniotic ectoderm, and its floor consists of the prismatic ectoderm of the embryonic disk—the continuity between the roof and floor being established at the margin of the embryonic disk. Outside the amniotic ectoderm is a thin layer of mesoderm, which is continuous with that of the somatopleure and is connected by the body-stalk with the mesodermal lining of the chorion.
xref: EMAPA:16065
xref: EMAPA:16077
xref: EMAPA:16110
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0004367
name: Descemet's membrane
def: "transparent homogeneous acellular layer found between the substantia propria and the endothelial layer of the cornea[MP]. The strong, resistant, thin, noncellular fourth layer of the cornea, located between the endothelium (from which it is secreted) and the stroma. (Cline et al., Dictionary of Visual Science, 4th ed)." [MP:0004285]
subset: vertebrate_core
synonym: "Descemet membrane" EXACT []
synonym: "Descemet's posterior elastic lamina" EXACT [FMA:58309]
synonym: "lamina limitans posterior" EXACT [FMA:58309]
synonym: "posterior limiting lamina" EXACT [MA:0001246]
synonym: "posterior limiting lamina " EXACT [MA:0001246]
synonym: "posterior limiting lamina of cornea" EXACT [FMA:58309]
synonym: "posterior limiting lamina of cornea " EXACT [FMA:58309]
xref: EMAPA:18804
xref: FMA:58309
xref: GAID:894
xref: MA:0001246
xref: MESH:A.09.371.060.217.271
xref: ncithesaurus:Descemet_s_Membrane
xref: SCTID:281076002
xref: TAO:0002157
xref: ZFA:0001686
property_value: UBPROP:0000001 "Portion of tissue that is the innermost layer of the cornea and consists of a monolayer of ploygonal cells.[TAO]" xsd:string
is_a: UBERON:0005769 ! basement membrane
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: adjacent_to UBERON:0001777 ! substantia propria of cornea
relationship: adjacent_to UBERON:0001985 ! corneal endothelium
relationship: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0004368
name: Reichert's cartilage
def: "a continuous cartilaginous formation in mesenchyme of the second pharyngeal arch in the embryo. The longer cranial or styloid segment is continuous with the otic capsule; its inferior end is angulated and is situated very close to the oropharynx. The smaller caudal segment is in contact with the body and greater horn of the hyoid cartilaginous structure" [doi:10.1111/j.1469-7580.2006.00524.x, MP:0004916]
comment: AO notes: in EHDAA2 this also develops from 3rd arch Mes from NC. Development notes: Classically defined as: a structure... develop the stapes, the styloid processes, the stylohyoid ligaments, and the lesser cornua of the hyoid bone; its proximal end gives rise to the stylohyoid ligament. Relationship to stapes disputed.
synonym: "hyaloid cartilage" EXACT [MP:0004916]
synonym: "hyoid cartilage" EXACT [EHDAA2:0000793]
synonym: "Reichert cartilage" EXACT []
synonym: "second branchial arch cartilage" EXACT []
synonym: "second pharyngeal arch cartilage" EXACT [MP:0004916]
xref: EHDAA2:0000793
xref: EMAPA:17622
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0010354 ! Reichert's cartilage pre-cartilage condensation
relationship: part_of UBERON:0001557 {source="EHDAA2"} ! upper respiratory tract
relationship: part_of UBERON:0003066 ! pharyngeal arch 2
[Term]
id: UBERON:0004369
name: Reichert's membrane
def: "a thick multilayered basement membrane between the parietal endoderm cells and the trophoblast cells" [DOI:10.1007/BF00184752]
xref: EMAPA:16057
is_a: UBERON:0002050 ! embryonic structure
relationship: surrounded_by UBERON:0000088 ! trophoblast
relationship: surrounded_by UBERON:0000925 ! endoderm
[Term]
id: UBERON:0004370
name: anterior limiting lamina of cornea
subset: vertebrate_core
synonym: "anterior limiting lamina" EXACT [MA:0001240]
synonym: "anterior limiting lamina of cornea" EXACT [FMA:58273]
synonym: "Bowman's anterior elastic lamina" EXACT [FMA:58273]
synonym: "Bowman's layer" EXACT [FMA:58273]
synonym: "Bowman's membrane" EXACT [FMA:58273]
synonym: "lamina limitans anterior (cornea)" EXACT [FMA:58273]
synonym: "Reichert's membrane" RELATED DUBIOUS [http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957]
xref: EMAPA:16057
xref: FMA:58273
xref: MA:0001240
xref: ncithesaurus:Bowman_s_Membrane
xref: SCTID:281075003
xref: TAO:0002155
xref: ZFA:0001684
property_value: UBPROP:0000001 "Acellular anatomical structure that is the zone of collagen fibers adjacent the basement membrane of the corneal epithelium.[TAO]" xsd:string
is_a: UBERON:0005769 ! basement membrane
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0004374
name: vitelline vasculature
def: "vasculature of the yolk sac." [MP:0001719]
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006876 ! vasculature of organ
relationship: part_of UBERON:0001040
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0001040 ! yolk sac
relationship: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0004375
name: bone of appendage
def: "A bone that is part of an appendage [Obol]." [OBOL:automatic]
synonym: "appendage bone" EXACT []
is_a: UBERON:0001474 ! bone
relationship: part_of UBERON:0000026
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000026 ! appendage
relationship: part_of UBERON:0000026 ! appendage
[Term]
id: UBERON:0004376
name: fin bone
def: "A bone that is part of a fin [Obol]." [OBOL:automatic]
synonym: "bone of fin" EXACT []
is_a: UBERON:0001474 ! bone
relationship: part_of UBERON:0008897
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0008897 ! fin
relationship: part_of UBERON:0008897 ! fin
[Term]
id: UBERON:0004377
name: distal metaphysis
synonym: "distal diaphyseal end of long bone" EXACT [FMA:32824]
xref: FMA:32824
is_a: UBERON:0001438 ! metaphysis
relationship: in_distal_side_of UBERON:0004769
intersection_of: UBERON:0001438 ! metaphysis
intersection_of: in_distal_side_of UBERON:0004769 ! diaphysis
relationship: in_distal_side_of UBERON:0004769 ! diaphysis
[Term]
id: UBERON:0004378
name: proximal metaphysis
synonym: "proximal diaphyseal end of long bone" EXACT [FMA:32823]
xref: FMA:32823
is_a: UBERON:0001438 ! metaphysis
relationship: in_proximal_side_of UBERON:0004769
intersection_of: UBERON:0001438 ! metaphysis
intersection_of: in_proximal_side_of UBERON:0004769 ! diaphysis
relationship: in_proximal_side_of UBERON:0004769 ! diaphysis
[Term]
id: UBERON:0004379
name: distal epiphysis
synonym: "distal end of long bone" EXACT [FMA:32822]
xref: FMA:32822
xref: SCTID:279999006
is_a: UBERON:0001437 ! epiphysis
relationship: adjacent_to UBERON:0004377
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: adjacent_to UBERON:0004377 ! distal metaphysis
relationship: adjacent_to UBERON:0004377 ! distal metaphysis
[Term]
id: UBERON:0004380
name: proximal epiphysis
synonym: "proximal end of long bone" EXACT [FMA:32821]
xref: FMA:32821
xref: SCTID:279998003
is_a: UBERON:0001437 ! epiphysis
relationship: adjacent_to UBERON:0004378
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: adjacent_to UBERON:0004378 ! proximal metaphysis
relationship: adjacent_to UBERON:0004378 ! proximal metaphysis
[Term]
id: UBERON:0004381
name: skeleton of limb
def: "The collection of all skeletal elements in an individual limb." [UBERON:cjm]
comment: Note that EHDAA2 considers hip and shoulder joints part of limb skeleton.
synonym: "limb skeleton" EXACT [EHDAA2:0002221]
synonym: "set of bones of limb" EXACT []
xref: EHDAA2:0002221
xref: VSAO:0000300
property_value: UBPROP:0000001 "Skeletal subdivision that is part of the limb.[VSAO]" xsd:string
is_a: UBERON:0010712 ! limb skeleton subdivision
is_a: UBERON:0011582 ! skeleton of limb/fin
relationship: subdivision_of UBERON:0002101
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
relationship: subdivision_of UBERON:0002101 ! limb
[Term]
id: UBERON:0004382
name: epiphysis of humerus
def: "An epiphysis that is part of a humerus [Obol]." [OBOL:automatic]
synonym: "humeral epiphysis" EXACT [OBOL:automatic]
xref: FMA:32825
xref: SCTID:313054009
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000976
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0000976 ! humerus
relationship: part_of UBERON:0000976 ! humerus
[Term]
id: UBERON:0004383
name: epiphysis of tibia
def: "An epiphysis that is part of a tibia [Obol]." [OBOL:automatic]
synonym: "tibial epiphysis" EXACT [FMA:33112]
xref: FMA:33112
xref: SCTID:314626006
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000979
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0000979 ! tibia
relationship: part_of UBERON:0000979 ! tibia
[Term]
id: UBERON:0004384
name: epiphysis of femur
def: "An epiphysis that is part of a femur [Obol]." [OBOL:automatic]
synonym: "femoral epiphysis" EXACT [FMA:32838]
xref: FMA:32838
xref: SCTID:314625005
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000981
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur
[Term]
id: UBERON:0004385
name: epiphysis of radius
def: "An epiphysis that is part of a radius [Obol]." [OBOL:automatic]
synonym: "radial epiphysis" EXACT [FMA:33770]
xref: FMA:33770
xref: SCTID:313055005
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001423
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001423 ! radius bone
relationship: part_of UBERON:0001423 ! radius bone
[Term]
id: UBERON:0004386
name: epiphysis of ulna
def: "An epiphysis that is part of a ulna [Obol]." [OBOL:automatic]
synonym: "ulnar epiphysis" EXACT [FMA:33748]
xref: FMA:33748
xref: SCTID:313056006
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001424
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001424 ! ulna
relationship: part_of UBERON:0001424 ! ulna
[Term]
id: UBERON:0004387
name: epiphysis of phalanx of finger
def: "An epiphysis that is part of a phalanx of finger [Obol]." [OBOL:automatic]
xref: FMA:240707
xref: SCTID:314620000
is_a: UBERON:0004446 ! epiphysis of phalanx
relationship: part_of UBERON:0001436
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001436 ! phalanx of finger
relationship: part_of UBERON:0001436 ! phalanx of finger
[Term]
id: UBERON:0004388
name: epiphysis of fibula
def: "An epiphysis that is part of a fibula [Obol]." [OBOL:automatic]
synonym: "fibula epiphysis" EXACT [FMA:33726]
xref: FMA:33726
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001446
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001446 ! fibula
relationship: part_of UBERON:0001446 ! fibula
[Term]
id: UBERON:0004389
name: epiphysis of metatarsal bone
def: "An epiphysis that is part of a metatarsal bone [Obol]." [OBOL:automatic]
synonym: "epiphysis of metatarsal" EXACT []
synonym: "metatarsal bone epiphysis" EXACT [FMA:33814]
synonym: "metatarsal epiphysis" EXACT []
xref: FMA:33814
xref: SCTID:313057002
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001448
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001448 ! metatarsal bone
relationship: part_of UBERON:0001448 ! metatarsal bone
[Term]
id: UBERON:0004390
name: epiphysis of metacarpal bone
def: "An epiphysis that is part of a metacarpal bone [Obol]." [OBOL:automatic]
synonym: "epiphysis of metacarpal" EXACT []
synonym: "metacarpal bone epiphysis" EXACT [FMA:33792]
synonym: "metacarpal epiphysis" EXACT []
xref: FMA:33792
xref: SCTID:314907001
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002374
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0002374 ! metacarpal bone
relationship: part_of UBERON:0002374 ! metacarpal bone
[Term]
id: UBERON:0004391
name: epiphysis of first metacarpal bone
def: "An epiphysis that is part of a metacarpal bone of digit 1 [Obol]." [OBOL:automatic]
synonym: "first metacarpal bone epiphysis" EXACT [FMA:33793]
synonym: "metacarpal 1 epiphysis" EXACT []
xref: FMA:33793
is_a: UBERON:0004390 ! epiphysis of metacarpal bone
relationship: part_of UBERON:0003645
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003645 ! metacarpal bone of digit 1
relationship: part_of UBERON:0003645 ! metacarpal bone of digit 1
[Term]
id: UBERON:0004392
name: epiphysis of second metacarpal bone
def: "An epiphysis that is part of a metacarpal bone of digit 2 [Obol]." [OBOL:automatic]
synonym: "metacarpal 2 epiphysis" EXACT []
synonym: "second metacarpal bone epiphysis" EXACT [FMA:33794]
xref: FMA:33794
is_a: UBERON:0004390 ! epiphysis of metacarpal bone
relationship: part_of UBERON:0003646
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003646 ! metacarpal bone of digit 2
relationship: part_of UBERON:0003646 ! metacarpal bone of digit 2
[Term]
id: UBERON:0004393
name: epiphysis of third metacarpal bone
def: "An epiphysis that is part of a metacarpal bone of digit 3 [Obol]." [OBOL:automatic]
synonym: "metacarpal 3 epiphysis" EXACT []
synonym: "third metacarpal bone epiphysis" EXACT [FMA:86328]
xref: FMA:86328
is_a: UBERON:0004390 ! epiphysis of metacarpal bone
relationship: part_of UBERON:0003647
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003647 ! metacarpal bone of digit 3
relationship: part_of UBERON:0003647 ! metacarpal bone of digit 3
[Term]
id: UBERON:0004394
name: epiphysis of fourth metacarpal bone
def: "An epiphysis that is part of a metacarpal bone of digit 4 [Obol]." [OBOL:automatic]
synonym: "fourth metacarpal bone epiphysis" EXACT [FMA:86329]
synonym: "metacarpal 4 epiphysis" EXACT []
xref: FMA:86329
is_a: UBERON:0004390 ! epiphysis of metacarpal bone
relationship: part_of UBERON:0003648
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003648 ! metacarpal bone of digit 4
relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4
[Term]
id: UBERON:0004395
name: epiphysis of first metatarsal bone
def: "An epiphysis that is part of a metatarsal bone of digit 1 [Obol]." [OBOL:automatic]
synonym: "first metatarsal bone epiphysis" EXACT [FMA:33815]
synonym: "metatarsal 1 epiphysis" EXACT []
xref: FMA:33815
is_a: UBERON:0004389 ! epiphysis of metatarsal bone
relationship: part_of UBERON:0003650
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003650 ! metatarsal bone of digit 1
relationship: part_of UBERON:0003650 ! metatarsal bone of digit 1
[Term]
id: UBERON:0004396
name: epiphysis of second metatarsal bone
def: "An epiphysis that is part of a metatarsal bone of digit 2 [Obol]." [OBOL:automatic]
synonym: "metatarsal 2 epiphysis" EXACT []
synonym: "second metatarsal bone epiphysis" EXACT [FMA:33816]
xref: FMA:33816
is_a: UBERON:0004389 ! epiphysis of metatarsal bone
relationship: part_of UBERON:0003651
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003651 ! metatarsal bone of digit 2
relationship: part_of UBERON:0003651 ! metatarsal bone of digit 2
[Term]
id: UBERON:0004397
name: epiphysis of third metatarsal bone
def: "An epiphysis that is part of a metatarsal bone of digit 3 [Obol]." [OBOL:automatic]
synonym: "metatarsal 3 epiphysis" EXACT []
synonym: "third metatarsal bone epiphysis" EXACT [FMA:86313]
xref: FMA:86313
is_a: UBERON:0004389 ! epiphysis of metatarsal bone
relationship: part_of UBERON:0003652
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003652 ! metatarsal bone of digit 3
relationship: part_of UBERON:0003652 ! metatarsal bone of digit 3
[Term]
id: UBERON:0004398
name: epiphysis of fourth metatarsal bone
def: "An epiphysis that is part of a metatarsal bone of digit 4 [Obol]." [OBOL:automatic]
synonym: "fourth metatarsal bone epiphysis" EXACT [FMA:86314]
synonym: "metatarsal 4 epiphysis" EXACT []
xref: FMA:86314
is_a: UBERON:0004389 ! epiphysis of metatarsal bone
relationship: part_of UBERON:0003653
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003653 ! metatarsal bone of digit 4
relationship: part_of UBERON:0003653 ! metatarsal bone of digit 4
[Term]
id: UBERON:0004399
name: epiphysis of fifth metatarsal bone
def: "An epiphysis that is part of a metatarsal bone of digit 5 [Obol]." [OBOL:automatic]
synonym: "fifth metatarsal bone epiphysis" EXACT [FMA:86315]
synonym: "metatarsal 5 epiphysis" EXACT []
xref: FMA:86315
is_a: UBERON:0004389 ! epiphysis of metatarsal bone
relationship: part_of UBERON:0003654
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003654 ! metatarsal bone of digit 5
relationship: part_of UBERON:0003654 ! metatarsal bone of digit 5
[Term]
id: UBERON:0004400
name: bone tissue of epiphysis
def: "A portion of bone tissue that is part of a epiphysis [Obol]." [OBOL:automatic]
xref: FMA:241364
is_a: UBERON:0005808 ! bone tissue of long bone
relationship: part_of UBERON:0001437
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0001437 ! epiphysis
relationship: part_of UBERON:0001437 ! epiphysis
[Term]
id: UBERON:0004401
name: bone tissue of distal epiphysis
def: "A portion of bone tissue that is part of a distal epiphysis [Obol]." [OBOL:automatic]
xref: FMA:241374
is_a: UBERON:0004400 ! bone tissue of epiphysis
relationship: part_of UBERON:0004379
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0004379 ! distal epiphysis
relationship: part_of UBERON:0004379 ! distal epiphysis
[Term]
id: UBERON:0004402
name: bone tissue of proximal epiphysis
def: "A portion of bone tissue that is part of a proximal epiphysis [Obol]." [OBOL:automatic]
xref: FMA:241372
is_a: UBERON:0004400 ! bone tissue of epiphysis
relationship: part_of UBERON:0004380
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0004380 ! proximal epiphysis
relationship: part_of UBERON:0004380 ! proximal epiphysis
[Term]
id: UBERON:0004403
name: periosteum of epiphysis
def: "A periosteum that is part of a epiphysis [Obol]." [OBOL:automatic]
synonym: "epiphysis periosteum" EXACT [FMA:32687]
xref: FMA:32687
is_a: UBERON:0002515 ! periosteum
relationship: part_of UBERON:0001437
intersection_of: UBERON:0002515 ! periosteum
intersection_of: part_of UBERON:0001437 ! epiphysis
relationship: part_of UBERON:0001437 ! epiphysis
[Term]
id: UBERON:0004404
name: distal epiphysis of humerus
def: "A distal epiphysis that is part of a humerus [Obol]." [OBOL:automatic]
synonym: "distal end of humerus" EXACT [FMA:32826]
synonym: "lower end of humerus" EXACT [FMA:32826]
xref: FMA:32826
xref: SCTID:310655007
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004382 ! epiphysis of humerus
relationship: part_of UBERON:0000976
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0000976 ! humerus
relationship: part_of UBERON:0000976 ! humerus
[Term]
id: UBERON:0004405
name: distal epiphysis of tibia
def: "A distal epiphysis that is part of a tibia [Obol]." [OBOL:automatic]
synonym: "distal end of tibia" EXACT [FMA:33116]
synonym: "lower end of tibia" EXACT [FMA:33116]
xref: FMA:33116
xref: SCTID:302527001
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004383 ! epiphysis of tibia
relationship: part_of UBERON:0000979
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0000979 ! tibia
relationship: part_of UBERON:0000979 ! tibia
[Term]
id: UBERON:0004406
name: distal epiphysis of femur
def: "A distal epiphysis that is part of a femur [Obol]." [OBOL:automatic]
synonym: "distal femoral epiphysis" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "distal head of femur" RELATED [AAO:0000893]
xref: AAO:0000893
xref: FMA:32844
xref: SCTID:280016000
property_value: UBPROP:0000001 "Head of the femur that articulates with the tibia and fibula.[AAO]" xsd:string
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004384 ! epiphysis of femur
relationship: part_of UBERON:0000981
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur
[Term]
id: UBERON:0004407
name: distal epiphysis of radius
def: "A distal epiphysis that is part of a radius [Obol]." [OBOL:automatic]
synonym: "distal end of radius" EXACT [FMA:33776]
synonym: "lower end of radius" EXACT [FMA:33776]
xref: FMA:33776
xref: SCTID:280013008
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004385 ! epiphysis of radius
relationship: part_of UBERON:0001423
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0001423 ! radius bone
relationship: part_of UBERON:0001423 ! radius bone
[Term]
id: UBERON:0004408
name: distal epiphysis of ulna
def: "A distal epiphysis that is part of a ulna [Obol]." [OBOL:automatic]
synonym: "distal end of ulna" EXACT [FMA:33754]
synonym: "lower end of ulna" EXACT [FMA:33754]
xref: FMA:33754
xref: SCTID:302521000
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004386 ! epiphysis of ulna
relationship: part_of UBERON:0001424
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0001424 ! ulna
relationship: part_of UBERON:0001424 ! ulna
[Term]
id: UBERON:0004409
name: distal epiphysis of phalanx of finger
def: "A distal epiphysis that is part of a phalanx of finger [Obol]." [OBOL:automatic]
xref: FMA:226577
xref: SCTID:280046002
is_a: UBERON:0004387 ! epiphysis of phalanx of finger
is_a: UBERON:0004448 ! distal epiphysis of phalanx
relationship: part_of UBERON:0001436
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0001436 ! phalanx of finger
relationship: part_of UBERON:0001436 ! phalanx of finger
[Term]
id: UBERON:0004410
name: distal epiphysis of fibula
def: "A distal epiphysis that is part of a fibula [Obol]." [OBOL:automatic]
synonym: "distal end of fibula" EXACT [FMA:33732]
synonym: "lower end of fibula" EXACT [FMA:33732]
xref: FMA:33732
xref: SCTID:129111008
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004388 ! epiphysis of fibula
relationship: part_of UBERON:0001446
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0001446 ! fibula
relationship: part_of UBERON:0001446 ! fibula
[Term]
id: UBERON:0004411
name: proximal epiphysis of humerus
def: "The upper extremity of the humerus (proximal humerus) consists of a large rounded head joined to the body by a constricted portion called the neck, and two eminences, the greater and lesser tubercles." [Wikipedia:Upper_extremity_of_humerus]
synonym: "head of the humerus" RELATED [Wikipedia:Upper_extremity_of_humerus]
synonym: "humeral head" RELATED [Wikipedia:Upper_extremity_of_humerus]
synonym: "proximal end of humerus" EXACT [FMA:23362]
synonym: "proximal humeral epiphysis" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "proximal humerus" RELATED [Wikipedia:Upper_extremity_of_humerus]
synonym: "upper end of humerus" EXACT [FMA:23362]
xref: FMA:23362
xref: http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray207.png
xref: ncithesaurus:Head_of_the_Humerus
xref: SCTID:280028008
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004382 ! epiphysis of humerus
relationship: part_of UBERON:0000976
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0000976 ! humerus
relationship: part_of UBERON:0000976 ! humerus
[Term]
id: UBERON:0004412
name: proximal epiphysis of femur
def: "A proximal epiphysis that is part of a femur [Obol]." [OBOL:automatic]
synonym: "proximal femoral epiphysis" EXACT [OBOL:automatic, UBERON:cjm]
xref: FMA:32841
xref: SCTID:244702009
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004384 ! epiphysis of femur
relationship: part_of UBERON:0000981
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur
[Term]
id: UBERON:0004413
name: proximal epiphysis of radius
def: "A proximal epiphysis that is part of a radius [Obol]." [OBOL:automatic]
synonym: "proximal end of radius" EXACT [FMA:39780]
synonym: "proximal radial epiphysis" EXACT [OBOL:automatic, UBERON:cjm]
synonym: "upper end of radius" EXACT [FMA:39780]
xref: FMA:39780
xref: SCTID:280029000
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004385 ! epiphysis of radius
relationship: part_of UBERON:0001423
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0001423 ! radius bone
relationship: part_of UBERON:0001423 ! radius bone
[Term]
id: UBERON:0004414
name: proximal epiphysis of phalanx of finger
def: "A proximal epiphysis that is part of a phalanx of finger [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of phalanx of finger" EXACT [FMA:226482]
synonym: "base of phalanx of finger" EXACT [FMA:226482]
synonym: "basis phalangis manus" EXACT [FMA:226482, FMA:TA]
xref: FMA:226482
xref: SCTID:272704004
is_a: UBERON:0004387 ! epiphysis of phalanx of finger
is_a: UBERON:0004447 ! proximal epiphysis of phalanx
relationship: part_of UBERON:0001436
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0001436 ! phalanx of finger
relationship: part_of UBERON:0001436 ! phalanx of finger
[Term]
id: UBERON:0004415
name: proximal epiphysis of metatarsal bone
def: "A proximal epiphysis that is part of a metatarsal bone [Obol]." [OBOL:automatic]
synonym: "base of metatarsal bone" EXACT [FMA:33817]
synonym: "basis ossis metatarsi" EXACT [FMA:33817, FMA:TA]
synonym: "proximal end of metatarsal bone" EXACT [FMA:33817]
synonym: "upper end of metatarsal bone" EXACT [FMA:33817]
xref: FMA:33817
xref: SCTID:119545008
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004389 ! epiphysis of metatarsal bone
relationship: part_of UBERON:0001448
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0001448 ! metatarsal bone
relationship: part_of UBERON:0001448 ! metatarsal bone
[Term]
id: UBERON:0004416
name: proximal epiphysis of metacarpal bone
def: "A proximal epiphysis that is part of a metacarpal bone [Obol]." [OBOL:automatic]
synonym: "base of metacarpal bone" EXACT [FMA:33795]
synonym: "basis ossis metacarpi" EXACT [FMA:33795, FMA:TA]
synonym: "metacarpal bone base" EXACT [FMA:33795]
synonym: "proximal end of metacarpal bone" EXACT [FMA:33795]
synonym: "upper end of metacarpal bone" EXACT [FMA:33795]
xref: FMA:33795
xref: SCTID:272695001
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004390 ! epiphysis of metacarpal bone
relationship: part_of UBERON:0002374
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0002374 ! metacarpal bone
relationship: part_of UBERON:0002374 ! metacarpal bone
[Term]
id: UBERON:0004417
name: proximal epiphysis of phalanx of thumb
def: "A proximal epiphysis that is part of a hand digit 1 phalanx [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of phalanx of thumb" EXACT [FMA:37489]
synonym: "base of phalanx of first digit of hand" EXACT [FMA:37489]
synonym: "base of phalanx of thumb" EXACT [FMA:37489]
xref: FMA:37489
xref: SCTID:272700008
is_a: UBERON:0004414 ! proximal epiphysis of phalanx of finger
relationship: part_of UBERON:0003620
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003620 ! hand digit 1 phalanx
relationship: part_of UBERON:0003620 ! hand digit 1 phalanx
[Term]
id: UBERON:0004418
name: proximal epiphysis of phalanx of index finger
def: "A proximal epiphysis that is part of a hand digit 2 phalanx [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of phalanx of index finger" EXACT [FMA:37498]
synonym: "base of phalanx of index finger" EXACT [FMA:37498]
synonym: "base of phalanx of second digit of hand" EXACT [FMA:37498]
synonym: "base of phalanx of second finger" EXACT [FMA:37498]
xref: FMA:37498
xref: SCTID:368307004
is_a: UBERON:0004414 ! proximal epiphysis of phalanx of finger
relationship: part_of UBERON:0003636
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003636 ! hand digit 2 phalanx
relationship: part_of UBERON:0003636 ! hand digit 2 phalanx
[Term]
id: UBERON:0004419
name: proximal epiphysis of phalanx of middle finger
def: "A proximal epiphysis that is part of a hand digit 3 phalanx [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of phalanx of middle finger" EXACT [FMA:37510]
synonym: "base of phalanx of middle finger" EXACT [FMA:37510]
synonym: "base of phalanx of third digit of hand" EXACT [FMA:37510]
synonym: "base of phalanx of third finger" EXACT [FMA:37510]
xref: FMA:37510
xref: SCTID:181997000
is_a: UBERON:0004414 ! proximal epiphysis of phalanx of finger
relationship: part_of UBERON:0003637
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003637 ! hand digit 3 phalanx
relationship: part_of UBERON:0003637 ! hand digit 3 phalanx
[Term]
id: UBERON:0004420
name: proximal epiphysis of phalanx of ring finger
def: "A proximal epiphysis that is part of a hand digit 4 phalanx [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of phalanx of ring finger" EXACT [FMA:37522]
synonym: "base of phalanx of fourth digit of hand" EXACT [FMA:37522]
synonym: "base of phalanx of fourth finger" EXACT [FMA:37522]
synonym: "base of phalanx of ring finger" EXACT [FMA:37522]
xref: FMA:37522
xref: SCTID:368337008
is_a: UBERON:0004414 ! proximal epiphysis of phalanx of finger
relationship: part_of UBERON:0003638
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003638 ! hand digit 4 phalanx
relationship: part_of UBERON:0003638 ! hand digit 4 phalanx
[Term]
id: UBERON:0004421
name: proximal epiphysis of phalanx of little finger
def: "A proximal epiphysis that is part of a hand digit 5 phalanx [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of phalanx of fifth finger" EXACT [FMA:37534]
synonym: "basal epiphysis of phalanx of little finger" EXACT [FMA:37534]
synonym: "base of phalanx of fifth digit of hand" EXACT [FMA:37534]
synonym: "base of phalanx of fifth finger" EXACT [FMA:37534]
synonym: "base of phalanx of little finger" EXACT [FMA:37534]
xref: FMA:37534
xref: SCTID:368351008
is_a: UBERON:0004414 ! proximal epiphysis of phalanx of finger
relationship: part_of UBERON:0003639
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003639 ! hand digit 5 phalanx
relationship: part_of UBERON:0003639 ! hand digit 5 phalanx
[Term]
id: UBERON:0004422
name: proximal epiphysis of first metacarpal bone
def: "A proximal epiphysis that is part of a metacarpal bone of digit 1 [Obol]." [OBOL:automatic]
synonym: "base of first metacarpal bone" EXACT [FMA:42788]
synonym: "first metacarpal bone base" EXACT [FMA:42788]
xref: FMA:42788
xref: SCTID:181978000
is_a: UBERON:0004391 ! epiphysis of first metacarpal bone
is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone
relationship: part_of UBERON:0003645
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003645 ! metacarpal bone of digit 1
relationship: part_of UBERON:0003645 ! metacarpal bone of digit 1
[Term]
id: UBERON:0004423
name: proximal epiphysis of second metacarpal bone
def: "A proximal epiphysis that is part of a metacarpal bone of digit 2 [Obol]." [OBOL:automatic]
synonym: "base of second metacarpal bone" EXACT [FMA:42791]
synonym: "proximal end of second metacarpal bone" EXACT [FMA:42791]
synonym: "second metacarpal bone base" EXACT [FMA:42791]
xref: FMA:42791
xref: SCTID:263461004
is_a: UBERON:0004392 ! epiphysis of second metacarpal bone
is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone
relationship: part_of UBERON:0003646
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003646 ! metacarpal bone of digit 2
relationship: part_of UBERON:0003646 ! metacarpal bone of digit 2
[Term]
id: UBERON:0004424
name: proximal epiphysis of third metacarpal bone
def: "A proximal epiphysis that is part of a metacarpal bone of digit 3 [Obol]." [OBOL:automatic]
synonym: "base of third metacarpal bone" EXACT [FMA:42794]
synonym: "proximal end of third metacarpal bone" EXACT [FMA:42794]
synonym: "third metacarpal bone base" EXACT [FMA:42794]
xref: FMA:42794
xref: SCTID:263465008
is_a: UBERON:0004393 ! epiphysis of third metacarpal bone
is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone
relationship: part_of UBERON:0003647
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003647 ! metacarpal bone of digit 3
relationship: part_of UBERON:0003647 ! metacarpal bone of digit 3
[Term]
id: UBERON:0004425
name: proximal epiphysis of fourth metacarpal bone
def: "A proximal epiphysis that is part of a metacarpal bone of digit 4 [Obol]." [OBOL:automatic]
synonym: "base of fourth metacarpal bone" EXACT [FMA:42797]
synonym: "fourth metacarpal bone base" EXACT [FMA:42797]
synonym: "proximal end of fourth metacarpal bone" EXACT [FMA:42797]
xref: FMA:42797
xref: SCTID:263469002
is_a: UBERON:0004394 ! epiphysis of fourth metacarpal bone
is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone
relationship: part_of UBERON:0003648
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003648 ! metacarpal bone of digit 4
relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4
[Term]
id: UBERON:0004426
name: proximal epiphysis of fifth metacarpal bone
def: "A proximal epiphysis that is part of a metacarpal bone of digit 5 [Obol]." [OBOL:automatic]
synonym: "base of fifth metacarpal bone" EXACT [FMA:42800]
synonym: "fifth metacarpal bone base" EXACT [FMA:42800]
synonym: "proximal end of fifth metacarpal bone" EXACT [FMA:42800]
xref: FMA:42800
xref: SCTID:263473004
is_a: UBERON:0004416 ! proximal epiphysis of metacarpal bone
is_a: UBERON:0011104 ! epiphysis of fifth metacarpal bone
relationship: part_of UBERON:0003649
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003649 ! metacarpal bone of digit 5
relationship: part_of UBERON:0003649 ! metacarpal bone of digit 5
[Term]
id: UBERON:0004427
name: proximal epiphysis of first metatarsal bone
def: "A proximal epiphysis that is part of a metatarsal bone of digit 1 [Obol]." [OBOL:automatic]
synonym: "base of first metatarsal bone" EXACT [FMA:42963]
synonym: "proximal end of first metatarsal bone" EXACT [FMA:42963]
xref: FMA:42963
xref: SCTID:182124002
is_a: UBERON:0004395 ! epiphysis of first metatarsal bone
is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone
relationship: part_of UBERON:0003650
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003650 ! metatarsal bone of digit 1
relationship: part_of UBERON:0003650 ! metatarsal bone of digit 1
[Term]
id: UBERON:0004428
name: proximal epiphysis of second metatarsal bone
def: "A proximal epiphysis that is part of a metatarsal bone of digit 2 [Obol]." [OBOL:automatic]
synonym: "base of second metatarsal bone" EXACT [FMA:42964]
synonym: "proximal end of second metatarsal bone" EXACT [FMA:42964]
xref: FMA:42964
xref: SCTID:182130002
is_a: UBERON:0004396 ! epiphysis of second metatarsal bone
is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone
relationship: part_of UBERON:0003651
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003651 ! metatarsal bone of digit 2
relationship: part_of UBERON:0003651 ! metatarsal bone of digit 2
[Term]
id: UBERON:0004429
name: proximal epiphysis of third metatarsal bone
def: "A proximal epiphysis that is part of a metatarsal bone of digit 3 [Obol]." [OBOL:automatic]
synonym: "base of third metatarsal bone" EXACT [FMA:42965]
synonym: "proximal end of third metatarsal bone" EXACT [FMA:42965]
xref: FMA:42965
xref: SCTID:182135007
is_a: UBERON:0004397 ! epiphysis of third metatarsal bone
is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone
relationship: part_of UBERON:0003652
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003652 ! metatarsal bone of digit 3
relationship: part_of UBERON:0003652 ! metatarsal bone of digit 3
[Term]
id: UBERON:0004430
name: proximal epiphysis of fourth metatarsal bone
def: "A proximal epiphysis that is part of a metatarsal bone of digit 4 [Obol]." [OBOL:automatic]
synonym: "base of fourth metatarsal bone" EXACT [FMA:42966]
synonym: "proximal end of fourth metatarsal bone" EXACT [FMA:42966]
xref: FMA:42966
xref: SCTID:182140004
is_a: UBERON:0004398 ! epiphysis of fourth metatarsal bone
is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone
relationship: part_of UBERON:0003653
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003653 ! metatarsal bone of digit 4
relationship: part_of UBERON:0003653 ! metatarsal bone of digit 4
[Term]
id: UBERON:0004431
name: proximal epiphysis of fifth metatarsal bone
def: "A proximal epiphysis that is part of a metatarsal bone of digit 5 [Obol]." [OBOL:automatic]
synonym: "base of fifth metatarsal bone" EXACT [FMA:42967]
synonym: "proximal end of fifth metatarsal bone" EXACT [FMA:42967]
xref: FMA:42967
xref: SCTID:182145009
is_a: UBERON:0004399 ! epiphysis of fifth metatarsal bone
is_a: UBERON:0004415 ! proximal epiphysis of metatarsal bone
relationship: part_of UBERON:0003654
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003654 ! metatarsal bone of digit 5
relationship: part_of UBERON:0003654 ! metatarsal bone of digit 5
[Term]
id: UBERON:0004432
name: proximal epiphysis of distal phalanx of index finger
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 2 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of distal phalanx of index finger" EXACT [FMA:37505]
synonym: "base of distal phalanx of index finger" EXACT [FMA:37505]
synonym: "base of distal phalanx of second digit of hand" EXACT [FMA:37505]
synonym: "base of distal phalanx of second finger" EXACT [FMA:37505]
xref: FMA:37505
xref: SCTID:263445001
is_a: UBERON:0004418 ! proximal epiphysis of phalanx of index finger
relationship: part_of UBERON:0004311
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004311 ! distal phalanx of hand digit 2
relationship: part_of UBERON:0004311 ! distal phalanx of hand digit 2
[Term]
id: UBERON:0004433
name: proximal epiphysis of distal phalanx of middle finger
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 3 [Obol]." [OBOL:automatic]
synonym: "base of distal phalanx of middle finger" EXACT [FMA:37517]
synonym: "base of distal phalanx of third digit of hand" EXACT [FMA:37517]
synonym: "base of distal phalanx of third finger" EXACT [FMA:37517]
xref: FMA:37517
xref: SCTID:263446000
is_a: UBERON:0004419 ! proximal epiphysis of phalanx of middle finger
relationship: part_of UBERON:0004312
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004312 ! distal phalanx of hand digit 3
relationship: part_of UBERON:0004312 ! distal phalanx of hand digit 3
[Term]
id: UBERON:0004434
name: proximal epiphysis of distal phalanx of ring finger
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 4 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of distal phalanx of fourth finger" EXACT [FMA:37529]
synonym: "basal epiphysis of distal phalanx of ring finger" EXACT [FMA:37529]
synonym: "base of distal phalanx of fourth digit of hand" EXACT [FMA:37529]
synonym: "base of distal phalanx of fourth finger" EXACT [FMA:37529]
synonym: "base of distal phalanx of ring finger" EXACT [FMA:37529]
xref: FMA:37529
xref: SCTID:263447009
is_a: UBERON:0004420 ! proximal epiphysis of phalanx of ring finger
relationship: part_of UBERON:0004313
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004313 ! distal phalanx of hand digit 4
relationship: part_of UBERON:0004313 ! distal phalanx of hand digit 4
[Term]
id: UBERON:0004435
name: proximal epiphysis of distal phalanx of little finger
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 5 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of distal phalanx of fifth finger" EXACT [FMA:37541]
synonym: "basal epiphysis of distal phalanx of little finger" EXACT [FMA:37541]
synonym: "base of distal phalanx of fifth digit of hand" EXACT [FMA:37541]
synonym: "base of distal phalanx of fifth finger" EXACT [FMA:37541]
synonym: "base of distal phalanx of little finger" EXACT [FMA:37541]
xref: FMA:37541
xref: SCTID:263448004
is_a: UBERON:0004421 ! proximal epiphysis of phalanx of little finger
relationship: part_of UBERON:0004314
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004314 ! distal phalanx of hand digit 5
relationship: part_of UBERON:0004314 ! distal phalanx of hand digit 5
[Term]
id: UBERON:0004436
name: proximal epiphysis of middle phalanx of index finger
def: "A proximal epiphysis that is part of a middle phalanx of hand digit 2 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of middle phalanx of index finger" EXACT [FMA:37502]
synonym: "base of middle phalanx of index finger" EXACT [FMA:37502]
synonym: "base of middle phalanx of second digit of hand" EXACT [FMA:37502]
synonym: "base of middle phalanx of second finger" EXACT [FMA:37502]
xref: FMA:37502
xref: SCTID:263428006
is_a: UBERON:0004418 ! proximal epiphysis of phalanx of index finger
relationship: part_of UBERON:0004320
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004320 ! middle phalanx of hand digit 2
relationship: part_of UBERON:0004320 ! middle phalanx of hand digit 2
[Term]
id: UBERON:0004437
name: proximal epiphysis of middle phalanx of middle finger
def: "A proximal epiphysis that is part of a middle phalanx of hand digit 3 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of middle phalanx of middle finger" EXACT [FMA:37514]
synonym: "base of middle phalanx of middle finger" EXACT [FMA:37514]
synonym: "base of middle phalanx of third digit of hand" EXACT [FMA:37514]
synonym: "base of middle phalanx of third finger" EXACT [FMA:37514]
xref: FMA:37514
xref: SCTID:263429003
is_a: UBERON:0004419 ! proximal epiphysis of phalanx of middle finger
relationship: part_of UBERON:0004321
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004321 ! middle phalanx of hand digit 3
relationship: part_of UBERON:0004321 ! middle phalanx of hand digit 3
[Term]
id: UBERON:0004438
name: proximal epiphysis of middle phalanx of ring finger
def: "A proximal epiphysis that is part of a middle phalanx of hand digit 4 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of middle phalanx of fourth finger" EXACT [FMA:37526]
synonym: "basal epiphysis of middle phalanx of ring finger" EXACT [FMA:37526]
synonym: "base of middle phalanx of fourth digit of hand" EXACT [FMA:37526]
synonym: "base of middle phalanx of fourth finger" EXACT [FMA:37526]
synonym: "base of middle phalanx of ring finger" EXACT [FMA:37526]
xref: FMA:37526
xref: SCTID:263430008
is_a: UBERON:0004420 ! proximal epiphysis of phalanx of ring finger
relationship: part_of UBERON:0004322
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004322 ! middle phalanx of hand digit 4
relationship: part_of UBERON:0004322 ! middle phalanx of hand digit 4
[Term]
id: UBERON:0004439
name: proximal epiphysis of middle phalanx of little finger
def: "A proximal epiphysis that is part of a middle phalanx of hand digit 5 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of middle phalanx of fifth finger" EXACT [FMA:37538]
synonym: "basal epiphysis of middle phalanx of little finger" EXACT [FMA:37538]
synonym: "base of middle phalanx of fifth digit of hand" EXACT [FMA:37538]
synonym: "base of middle phalanx of fifth finger" EXACT [FMA:37538]
synonym: "base of middle phalanx of little finger" EXACT [FMA:37538]
xref: FMA:37538
xref: SCTID:263431007
is_a: UBERON:0004421 ! proximal epiphysis of phalanx of little finger
relationship: part_of UBERON:0004323
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004323 ! middle phalanx of hand digit 5
relationship: part_of UBERON:0004323 ! middle phalanx of hand digit 5
[Term]
id: UBERON:0004440
name: proximal epiphysis of proximal phalanx of index finger
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 2 [Obol]." [OBOL:automatic]
synonym: "base of proximal phalanx of index finger" EXACT [FMA:37499]
synonym: "base of proximal phalanx of second digit of hand" EXACT [FMA:37499]
synonym: "base of proximal phalanx of second finger" EXACT [FMA:37499]
xref: FMA:37499
xref: SCTID:263412001
is_a: UBERON:0004418 ! proximal epiphysis of phalanx of index finger
relationship: part_of UBERON:0004328
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004328 ! proximal phalanx of hand digit 2
relationship: part_of UBERON:0004328 ! proximal phalanx of hand digit 2
[Term]
id: UBERON:0004441
name: proximal epiphysis of proximal phalanx of middle finger
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 3 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of proximal phalanx of middle finger" EXACT [FMA:37511]
synonym: "base of proximal phalanx of middle finger" EXACT [FMA:37511]
synonym: "base of proximal phalanx of third digit of hand" EXACT [FMA:37511]
synonym: "base of proximal phalanx of third finger" EXACT [FMA:37511]
xref: FMA:37511
xref: SCTID:263413006
is_a: UBERON:0004419 ! proximal epiphysis of phalanx of middle finger
relationship: part_of UBERON:0004329
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004329 ! proximal phalanx of hand digit 3
relationship: part_of UBERON:0004329 ! proximal phalanx of hand digit 3
[Term]
id: UBERON:0004442
name: proximal epiphysis of proximal phalanx of ring finger
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 4 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of proximal phalanx of fourth finger" EXACT [FMA:37523]
synonym: "basal epiphysis of proximal phalanx of ring finger" EXACT [FMA:37523]
synonym: "base of proximal phalanx of fourth digit of hand" EXACT [FMA:37523]
synonym: "base of proximal phalanx of fourth finger" EXACT [FMA:37523]
synonym: "base of proximal phalanx of ring finger" EXACT [FMA:37523]
xref: FMA:37523
xref: SCTID:263414000
is_a: UBERON:0004420 ! proximal epiphysis of phalanx of ring finger
relationship: part_of UBERON:0004330
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004330 ! proximal phalanx of hand digit 4
relationship: part_of UBERON:0004330 ! proximal phalanx of hand digit 4
[Term]
id: UBERON:0004443
name: proximal epiphysis of proximal phalanx of little finger
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 5 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of proximal phalanx of little finger" EXACT [FMA:37535]
synonym: "base of proximal phalanx of fifth digit of hand" EXACT [FMA:37535]
synonym: "base of proximal phalanx of fifth finger" EXACT [FMA:37535]
synonym: "base of proximal phalanx of little finger" EXACT [FMA:37535]
xref: FMA:37535
xref: SCTID:263415004
is_a: UBERON:0004421 ! proximal epiphysis of phalanx of little finger
relationship: part_of UBERON:0004331
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004331 ! proximal phalanx of hand digit 5
relationship: part_of UBERON:0004331 ! proximal phalanx of hand digit 5
[Term]
id: UBERON:0004444
name: proximal epiphysis of distal phalanx of thumb
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 1 [Obol]." [OBOL:automatic]
synonym: "base of distal phalanx of thumb" EXACT [FMA:37493]
xref: FMA:37493
xref: SCTID:182008001
is_a: UBERON:0004417 ! proximal epiphysis of phalanx of thumb
relationship: part_of UBERON:0004337
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004337 ! distal phalanx of hand digit 1
relationship: part_of UBERON:0004337 ! distal phalanx of hand digit 1
[Term]
id: UBERON:0004445
name: proximal epiphysis of proximal phalanx of thumb
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 1 [Obol]." [OBOL:automatic]
synonym: "basal epiphysis of proximal phalanx of thumb" EXACT [FMA:37490]
synonym: "base of proximal phalanx of thumb" EXACT [FMA:37490]
xref: FMA:37490
xref: SCTID:181993001
is_a: UBERON:0004417 ! proximal epiphysis of phalanx of thumb
relationship: part_of UBERON:0004338
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004338 ! proximal phalanx of hand digit 1
relationship: part_of UBERON:0004338 ! proximal phalanx of hand digit 1
[Term]
id: UBERON:0004446
name: epiphysis of phalanx
def: "An epiphysis that is part of a phalanx [Obol]." [OBOL:automatic]
xref: SCTID:280033007
is_a: UBERON:0001437 ! epiphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0003221
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003221 ! phalanx
relationship: part_of UBERON:0003221 ! phalanx
[Term]
id: UBERON:0004447
name: proximal epiphysis of phalanx
def: "A proximal epiphysis that is part of a phalanx [Obol]." [OBOL:automatic]
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004446 ! epiphysis of phalanx
relationship: part_of UBERON:0003221
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003221 ! phalanx
relationship: part_of UBERON:0003221 ! phalanx
[Term]
id: UBERON:0004448
name: distal epiphysis of phalanx
def: "A distal epiphysis that is part of a phalanx [Obol]." [OBOL:automatic]
is_a: UBERON:0004379 ! distal epiphysis
is_a: UBERON:0004446 ! epiphysis of phalanx
relationship: part_of UBERON:0003221
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0003221 ! phalanx
relationship: part_of UBERON:0003221 ! phalanx
[Term]
id: UBERON:0004449
name: cerebral artery
def: "One of three main pairs of arteries and their branches, which irrigate the cerebrum of the brain." [Wikipedia:Cerebral_artery]
xref: AAO:0010493
xref: EHDAA2:0000233
xref: EHDAA:5294
xref: EMAPA:18613
xref: GAID:484
xref: MA:0002562
xref: MESH:A.07.231.114.228
xref: ncithesaurus:Cerebral_Artery
xref: SCTID:181308008
xref: XAO:0000367
property_value: UBPROP:0000001 "Part of the internal carotid containing many branches supplying blood to the chorioid plexuses of the brain.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of internal carotid (AAO:0010219)[AAO]" xsd:string
is_a: UBERON:0004573 ! systemic artery
relationship: continuous_with UBERON:0001532 ! internal carotid artery
relationship: part_of UBERON:0003709 ! circle of Willis
[Term]
id: UBERON:0004450
name: gastric vein
xref: AAO:0011046
xref: MA:0002128
xref: ncithesaurus:Gastric_Vein
xref: SCTID:281060006
xref: XAO:0000389
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0004451
name: trunk or cervical vertebra
def: "A vertebra in the trunk or cervical region. Includes all cervical, thoracic and lumbar vertebrae, but excludes caudal vertebra." [UBERONREF:0000006]
comment: In humans, there are 24 presacral vertebrae (7 cervical, 12 thoracic, and 5 lumbar). AO notes: it's not clear if the XAO class belongs here or below
xref: MA:0002869
xref: XAO:0003077
is_a: UBERON:0002412 ! vertebra
union_of: UBERON:0002413 ! cervical vertebra
union_of: UBERON:0011677 ! trunk vertebra
[Term]
id: UBERON:0004452
name: carpal region
alt_id: UBERON:0001462
def: "A mesopodium that is part of a hand. Includes as parts the carpal skeleton and associated tissues[cjm]. The anatomical region surrounding the carpus including the distal parts of the bones of the forearm and the proximal parts of the metacarpus or five metacarpal bones and the series of joints between these bones, thus referred to as wrist joints. This region also include the carpal tunnel, the anatomical snuff box, the flexor retinaculum, and the extensor retinaculum[WP,unvetted]" [UBERON:cjm, Wikipedia:Wrist]
subset: uberon_slim
synonym: "articulatio radiocarpea" RELATED LATIN [Wikipedia:Wrist]
synonym: "carpal limb segment" EXACT []
synonym: "carpal segment" EXACT []
synonym: "carpus" RELATED INCONSISTENT []
synonym: "fore basipodium" EXACT [MA:th]
synonym: "fore mesopodium" EXACT [MA:th]
synonym: "hand mesopodium" EXACT []
synonym: "regio carpalis" EXACT [FMA:24922, FMA:TA]
synonym: "wrist" EXACT [MA:0000039]
synonym: "wrist region" EXACT []
xref: EHDAA2:0000218
xref: EHDAA:5196
xref: EMAPA:19122
xref: FMA:24922
xref: GAID:59
xref: galen:Wrist
xref: http://upload.wikimedia.org/wikipedia/commons/c/cc/Hand_parts.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Human_wrist.png/200px-Human_wrist.png
xref: MA:0000039
xref: MESH:A.01.378.800.667.715
xref: OpenCyc:Mx4rvVjncpwpEbGdrcN5Y29ycA
xref: SCTID:361289009
is_a: UBERON:0006716 ! mesopodium region
is_a: UBERON:0008785 {source="FMA"} ! upper limb segment
relationship: part_of UBERON:0002398
intersection_of: UBERON:0006716 ! mesopodium region
intersection_of: part_of UBERON:0002398 ! hand
relationship: distally_connected_to UBERON:0004453 ! metacarpus region
relationship: part_of UBERON:0002398 ! hand
relationship: proximally_connected_to UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0004453
name: metacarpus region
comment: Editor notes: Note that along with FMA we treat this as a limb segment rather than a purely skeletal element. AO notes: Note that mammalian and non-mammalian AOs differ in whether they consider this a part of the skeleton
synonym: "distal segment of hand proper" EXACT [FMA:24925]
synonym: "metacarpal part of hand" EXACT [FMA:24925]
synonym: "metacarpal region" EXACT [FMA:24925]
xref: FMA:24925
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Metacarpals_numbered-en.svg/200px-Metacarpals_numbered-en.svg.png
xref: MA:0000042
is_a: UBERON:0005451 {source="FMA"} ! segment of hand
is_a: UBERON:0009877 ! metapodium region
relationship: part_of UBERON:0002398
intersection_of: UBERON:0009877 ! metapodium region
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0004454
name: tarsal region
alt_id: UBERON:0002388
def: "mesopodial segment of the foot, including the tarsal skeleton and associated tissues." [UBERON:cjm, Wikipedia:Ankle]
comment: note that this term refers to the limb segment. See also: tarsal bones and tarsal skeleton. AO notes: MA has both tarsus (part of foot, has tarsal bone) and ankle (part of hindlimb, has joint, nerve, skin).
subset: uberon_slim
synonym: "ankle" EXACT [MA:0000043]
synonym: "ankle region" EXACT []
synonym: "articulatio talocruralis" RELATED LATIN [Wikipedia:Ankle]
synonym: "hind basipodium" RELATED [MA:th]
synonym: "hind mesopodium" RELATED [MA:th]
synonym: "hock" RELATED SENSU [Wikipedia:Hock_(anatomy)]
synonym: "tarsal limb segment" EXACT []
xref: EFO:0001409
xref: EMAPA:19133
xref: FMA:9665
xref: GAID:41
xref: galen:Ankle
xref: http://upload.wikimedia.org/wikipedia/commons/b/bf/Ankle_en.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png
xref: MA:0000043
xref: MESH:A.01.378.610.250.149
xref: MESH:A.13.473.821
xref: OpenCyc:Mx4rvVi-R5wpEbGdrcN5Y29ycA
xref: SCTID:361292008
is_a: UBERON:0006716 ! mesopodium region
is_a: UBERON:0008784 ! lower limb segment
relationship: part_of UBERON:0002387
intersection_of: UBERON:0006716 ! mesopodium region
intersection_of: part_of UBERON:0002387 ! foot
disjoint_from: UBERON:0004772 ! eyelid tarsus
relationship: distally_connected_to UBERON:0000983 ! metatarsus region
relationship: part_of UBERON:0002387 ! foot
relationship: proximally_connected_to UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0004455
name: neurula
alt_id: UBERON:0007013
def: "An embryo at the neurula stage." [GOC:cjm]
synonym: "neurula embryo" EXACT [BILA:0000061]
xref: BILA:0000061
xref: BTO:0001766
xref: ncithesaurus:Neurula
is_a: UBERON:0000922 ! embryo
relationship: existence_starts_and_ends_during UBERON:0000110
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_starts_and_ends_during UBERON:0000110 ! neurula stage
relationship: develops_from UBERON:0004734 ! gastrula
relationship: existence_starts_and_ends_during UBERON:0000110 ! neurula stage
[Term]
id: UBERON:0004456
name: entire sense organ system
def: "Sum of all sensory systems in an organism." []
comment: note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs
subset: uberon_slim
synonym: "sense organ system" EXACT [FMA:78499]
xref: FMA:78499
is_a: UBERON:0000467 ! anatomical system
relationship: overlaps UBERON:0001016 ! nervous system
[Term]
id: UBERON:0004457
name: cavity lining
xref: MA:0002448
is_a: UBERON:0004458 {notes="pre inferred via union_of"} ! body cavity or lining
is_a: UBERON:0004923 ! organ component layer
[Term]
id: UBERON:0004458
name: body cavity or lining
xref: EMAPA:16060
xref: MA:0000005
is_a: UBERON:0001062 ! anatomical entity
union_of: UBERON:0002323 ! body cavity
union_of: UBERON:0004457 ! cavity lining
[Term]
id: UBERON:0004461
name: musculature of head
def: "A musculature that is part of a head [Obol]." [OBOL:automatic]
synonym: "head musculature" EXACT [FMA:71287]
synonym: "muscle group of head" EXACT [FMA:71287]
synonym: "muscles of head" EXACT [FMA:71287]
synonym: "musculi capitis" EXACT [FMA:71287, FMA:TA]
xref: FMA:71287
is_a: UBERON:0008229 ! craniocervical region musculature
relationship: part_of UBERON:0000033
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0004462
name: musculature of body wall
def: "A musculature that is part of a body wall [Obol]." [OBOL:automatic]
synonym: "body wall muscles" RELATED []
synonym: "body wall musculature" EXACT [FMA:86931]
xref: FMA:86931
is_a: UBERON:0004479 ! musculature of trunk
relationship: part_of UBERON:0000309
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000309 ! body wall
relationship: part_of UBERON:0000309 ! body wall
[Term]
id: UBERON:0004463
name: musculature of hindlimb stylopod
def: "A musculature that is part of a hindlimb stylopod (upper leg / thigh)[Obol]." [OBOL:automatic]
synonym: "muscle group of thigh" EXACT [FMA:50208]
synonym: "musculature of thigh" EXACT [FMA:50208]
synonym: "set of muscles of thigh" EXACT [FMA:50208]
synonym: "thigh musculature" EXACT [FMA:50208]
xref: FMA:50208
is_a: UBERON:0004466 ! musculature of leg
relationship: part_of UBERON:0000376
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0004464
name: musculature of thorax
def: "A musculature that is part of a thorax [Obol]." [OBOL:automatic]
comment: note BTO and FMA do not mean precisely the same thing here
synonym: "muscle group of thorax" EXACT [FMA:71293]
synonym: "muscles of thorax" EXACT [FMA:71293]
synonym: "musculi thoracis" EXACT [FMA:71293, FMA:TA]
synonym: "thoracic musculature" EXACT [FMA:71293]
xref: BTO:0000508
xref: FMA:71293
is_a: UBERON:0004479 ! musculature of trunk
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0004465
name: musculature of neck
def: "A musculature that is part of a neck [Obol]." [OBOL:automatic]
synonym: "cervical muscles" EXACT [AAO:0000091]
synonym: "muscle group of neck" EXACT [FMA:71290]
synonym: "muscles of neck" EXACT [FMA:71290]
synonym: "musculi cervicis" EXACT [FMA:71290, FMA:TA]
synonym: "musculi colli" EXACT [FMA:71290, FMA:TA]
synonym: "neck musculature" EXACT [FMA:71290]
xref: AAO:0000091
xref: FMA:71290
xref: MESH:A.02.633.567.650
is_a: UBERON:0008229 ! craniocervical region musculature
relationship: part_of UBERON:0000974
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0004466
name: musculature of leg
alt_id: UBERON:0005632
def: "A musculature that is part of a lower leg or upper leg [Obol]." [OBOL:automatic]
comment: see notes on UBERON:0000978 for possible confusion over the term 'leg'. This class represents the class-union of upper leg musculature and lower leg musculature (and thus may not mean precisely the same thing as the EHDAA2 class)
synonym: "leg muscle system" EXACT [EHDAA2:0000973]
xref: EHDAA2:0000973
is_a: UBERON:0004482 ! musculature of lower limb
relationship: part_of UBERON:0000978
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0004467
name: musculature of pharynx
def: "A musculature that is part of a pharynx [Obol]." [OBOL:automatic]
comment: See comments for 'pharyngeal muscle'
subset: vertebrate_core
xref: FMA:264609
xref: TAO:0001307
xref: ZFA:0001307
is_a: UBERON:0001015 ! musculature
relationship: overlaps UBERON:0001042 ! chordate pharynx
[Term]
id: UBERON:0004468
name: set of muscles of vertebral column
def: "A musculature that is part of a vertebral column [Obol]." [OBOL:automatic]
synonym: "muscle group of vertebral column" EXACT [FMA:33061]
xref: FMA:33061
is_a: UBERON:0001015 ! musculature
relationship: part_of UBERON:0001130
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0004469
name: musculature of back
def: "A musculature that is part of a back [Obol]." [OBOL:automatic]
synonym: "muscle group of back" EXACT [FMA:71291]
synonym: "muscles of back" EXACT [FMA:71291]
synonym: "musculi dorsi" EXACT [FMA:71291, FMA:TA]
xref: FMA:71291
is_a: UBERON:0001015 ! musculature
relationship: part_of UBERON:0001137
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001137 ! dorsum
relationship: part_of UBERON:0001137 ! dorsum
[Term]
id: UBERON:0004470
name: musculature of pelvic girdle
alt_id: UBERON:0005633
def: "A musculature that is part of a pelvic girdle [Obol]." [OBOL:automatic]
synonym: "muscle group of pelvic girdle" EXACT [FMA:50205]
synonym: "pelvic girdle muscle system" EXACT [EHDAA2:0001429]
synonym: "pelvic girdle muscles" EXACT [AAO:0000427]
synonym: "pelvic girdle musculature" EXACT [FMA:50205]
xref: AAO:0000427
xref: EHDAA2:0001429
xref: FMA:50205
is_a: UBERON:0001015 ! musculature
relationship: part_of UBERON:0001271
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001271 ! pelvic girdle region
relationship: part_of UBERON:0001271 ! pelvic girdle region
[Term]
id: UBERON:0004471
name: musculature of pectoral girdle
def: "A subdivision of the musculature of the body in the pectoral girdle region. Includes pectoral and shoulder muscles." [UBERON:cjm]
synonym: "muscle group of pectoral girdle" EXACT [FMA:33519]
synonym: "pectoral girdle muscles" EXACT [AAO:0000423]
synonym: "pectoral girdle musculature" EXACT [FMA:33519]
xref: AAO:0000423
xref: FMA:33519
is_a: UBERON:0001015 ! musculature
relationship: part_of UBERON:0001421
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0001421 ! pectoral girdle region
[Term]
id: UBERON:0004472
name: musculature of chest
def: "A musculature that is part of a chest [Obol]." [OBOL:automatic]
synonym: "chest musculature" EXACT [FMA:74779]
xref: FMA:74779
is_a: UBERON:0004464 ! musculature of thorax
relationship: part_of UBERON:0001443
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0004473
name: musculature of face
comment: originally created to reflect the distinction drawn in FMA between a facial muscle and the entire musculature of the face. However, naming both does not serve any particular purpose
synonym: "entire facial musculature" EXACT [UBERON:cjm]
synonym: "facial muscles" EXACT [FMA:71288]
synonym: "muscle group of face" EXACT [FMA:71288]
synonym: "musculi faciei" EXACT [FMA:71288, FMA:TA]
xref: FMA:71288
is_a: UBERON:0004461 ! musculature of head
relationship: part_of UBERON:0001456
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0004474
name: musculature of arm
def: "A musculature that is part of an arm [Obol]." [OBOL:automatic]
synonym: "arm musculature" EXACT [FMA:50202]
synonym: "muscle group of arm" EXACT [FMA:50202]
xref: FMA:50202
is_a: UBERON:0004481 ! musculature of upper limb
relationship: part_of UBERON:0001460
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0004475
name: musculature of hip
def: "A musculature that is part of a hip [Obol]." [OBOL:automatic]
synonym: "hip musculature" EXACT [FMA:50227]
synonym: "muscle group of hip" EXACT [FMA:50227]
xref: FMA:50227
is_a: UBERON:0001015 ! musculature
relationship: part_of UBERON:0001464
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0004476
name: musculature of shoulder
def: "A musculature that is part of a shoulder [Obol]." [OBOL:automatic]
synonym: "muscle group of shoulder" EXACT [FMA:50220]
xref: FMA:50220
is_a: UBERON:0001015 ! musculature
relationship: part_of UBERON:0001467
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0004477
name: Set of muscles of tongue
def: "A musculature that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "muscle group of tongue" EXACT [FMA:71289]
synonym: "muscles of tongue" EXACT [FMA:71289]
synonym: "musculi linguae" EXACT [FMA:71289, FMA:TA]
xref: FMA:71289
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004461 ! musculature of head
relationship: part_of UBERON:0001723
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001723 ! tongue
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0004478
name: musculature of larynx
def: "A musculature that is part of a larynx [Obol]." [OBOL:automatic]
synonym: "laryngeal muscles" EXACT [FMA:46616]
synonym: "laryngeal muscles set" EXACT [FMA:46616]
synonym: "muscle group of larynx" EXACT [FMA:46616]
xref: FMA:264611
xref: FMA:46616
xref: MESH:A.02.633.567.500
is_a: UBERON:0001015 ! musculature
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001737
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0004479
name: musculature of trunk
def: "A musculature that is part of a trunk [Obol]." [OBOL:automatic]
synonym: "muscle group of trunk" EXACT [FMA:50187]
xref: AAO:0011572
xref: EFO:0003531
xref: FMA:50187
is_a: UBERON:0001015 ! musculature
relationship: part_of UBERON:0002100
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0004480
name: musculature of limb
alt_id: UBERON:0005635
def: "A musculature that is part of a limb [Obol]." [OBOL:automatic]
synonym: "limb muscle system" EXACT [EHDAA2:0000995]
synonym: "limb musculature" EXACT [FMA:50188]
synonym: "muscle group of limb" EXACT [FMA:50188]
xref: EHDAA2:0000995
xref: FMA:50188
is_a: UBERON:0007271 ! limb/fin musculature
relationship: part_of UBERON:0002101
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0004481
name: musculature of upper limb
def: "A musculature that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "muscles of upper limb" EXACT [FMA:71296]
synonym: "musculi membri superioris" EXACT [FMA:71296, FMA:TA]
synonym: "upper limb musculature" EXACT [FMA:71296]
xref: FMA:71296
is_a: UBERON:0004480 ! musculature of limb
is_a: UBERON:0007269 ! pectoral appendage musculature
relationship: part_of UBERON:0002102
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0004482
name: musculature of lower limb
def: "A musculature that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "muscles of lower limb" EXACT [FMA:71297]
synonym: "musculi membri inferioris" EXACT [FMA:71297, FMA:TA]
xref: FMA:71297
is_a: UBERON:0004480 ! musculature of limb
is_a: UBERON:0007270 ! pelvic appendage musculature
relationship: part_of UBERON:0002103
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0004483
name: Set of iliocostalis muscles
def: "A musculature that is part of a iliocostalis [Obol]." [OBOL:automatic]
synonym: "iliocostalis muscle group" EXACT [FMA:33062]
synonym: "iliocostalis muscles set" EXACT [FMA:33062]
xref: FMA:33062
is_a: UBERON:0001015 ! musculature
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002251
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002251 ! iliocostalis muscle
relationship: part_of UBERON:0002251 ! iliocostalis muscle
[Term]
id: UBERON:0004484
name: Set of splenius muscles
def: "A musculature that is part of a splenius [Obol]." [OBOL:automatic]
synonym: "splenius muscle group" EXACT [FMA:22596]
synonym: "splenius muscles set" EXACT [FMA:22596]
xref: FMA:22596
is_a: UBERON:0001015 ! musculature
relationship: part_of UBERON:0002252
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002252 ! splenius
relationship: part_of UBERON:0002252 ! splenius
[Term]
id: UBERON:0004485
name: Set of muscles of pelvis
def: "A musculature that is part of a pelvis [Obol]." [OBOL:automatic]
synonym: "muscle group of pelvis" EXACT [FMA:50248]
xref: FMA:50248
is_a: UBERON:0004479 ! musculature of trunk
relationship: part_of UBERON:0002355
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0004486
name: musculature of perineum
def: "A musculature that is part of a perineum [Obol]." [OBOL:automatic]
synonym: "musculi perinei" EXACT [FMA:71295, FMA:TA]
synonym: "perineal muscles" EXACT [FMA:71295]
synonym: "perineal muscles set" EXACT [FMA:71295]
xref: EMAPA:18923
xref: FMA:71295
is_a: UBERON:0004479 ! musculature of trunk
relationship: part_of UBERON:0002356
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002356 ! perineum
relationship: part_of UBERON:0002356 ! perineum
[Term]
id: UBERON:0004487
name: musculature of forearm
def: "A musculature that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "muscle group of forearm" EXACT [FMA:39089]
xref: FMA:39089
is_a: UBERON:0004474 ! musculature of arm
relationship: part_of UBERON:0002386
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0004488
name: musculature of foot
def: "A musculature that is part of a foot [Obol]." [OBOL:automatic]
synonym: "foot musculature" EXACT [FMA:50214]
synonym: "muscle group of foot" EXACT [FMA:50214]
xref: FMA:50214
is_a: UBERON:0004482 ! musculature of lower limb
relationship: part_of UBERON:0002387
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0004489
name: musculature of hand
def: "A musculature that is part of a hand [Obol]." [OBOL:automatic]
synonym: "hand musculature" EXACT [FMA:42368]
synonym: "muscle group of hand" EXACT [FMA:42368]
xref: FMA:42368
is_a: UBERON:0004481 ! musculature of upper limb
relationship: part_of UBERON:0002398
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0004490
name: cardiac muscle tissue of atrium
def: "A portion of cardiac muscle tissue that is part of an atrium [Obol]." [OBOL:automatic]
xref: FMA:7283
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002081
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0004491
name: cardiac muscle tissue of interatrial septum
def: "A portion of cardiac muscle tissue that is part of a interatrial septum [Obol]." [OBOL:automatic]
xref: FMA:84083
is_a: UBERON:0004492 ! cardiac muscle tissue of cardiac septum
relationship: part_of UBERON:0002085
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002085 ! interatrial septum
relationship: part_of UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004492
name: cardiac muscle tissue of cardiac septum
def: "A portion of cardiac muscle tissue that is part of a cardiac septum [Obol]." [OBOL:automatic]
xref: FMA:226279
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002099
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002099 ! cardiac septum
relationship: part_of UBERON:0002099 ! cardiac septum
[Term]
id: UBERON:0004493
name: cardiac muscle tissue of myocardium
def: "A portion of cardiac muscle tissue that is part of a myocardium [Obol]." [OBOL:automatic]
comment: Editors note: Note placement of MA class based on parthood relationship
xref: FMA:261726
xref: MA:0002441
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002349
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002349 ! myocardium
relationship: part_of UBERON:0002349 {source="MA"} ! myocardium
relationship: part_of UBERON:0002349 ! myocardium
[Term]
id: UBERON:0004494
name: cardiac muscle tissue of papillary muscle
def: "A portion of cardiac muscle tissue that is part of a papillary muscle [Obol]." [OBOL:automatic]
xref: FMA:84425
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002494
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002494 ! papillary muscle
relationship: part_of UBERON:0002494 ! papillary muscle
[Term]
id: UBERON:0004495
name: skeletal muscle tissue of diaphragm
def: "A portion of skeletal muscle tissue that is part of a diaphragm [Obol]." [OBOL:automatic]
xref: FMA:261898
is_a: UBERON:0003898 ! skeletal muscle of trunk
is_a: UBERON:0004830 ! respiratory system skeletal muscle
relationship: part_of UBERON:0001103
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001103 ! diaphragm
relationship: part_of UBERON:0001103 ! diaphragm
[Term]
id: UBERON:0004496
name: skeletal muscle tissue of iliacus
def: "A portion of skeletal muscle tissue that is part of a iliacus [Obol]." [OBOL:automatic]
xref: FMA:261992
is_a: UBERON:0003271 ! skeletal muscle of pelvic girdle
relationship: part_of UBERON:0001369
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001369 ! iliacus muscle
relationship: part_of UBERON:0001369 ! iliacus muscle
[Term]
id: UBERON:0004497
name: skeletal muscle tissue of gluteus maximus
def: "A portion of skeletal muscle tissue that is part of a gluteus maximus [Obol]." [OBOL:automatic]
xref: FMA:261980
is_a: UBERON:0003271 ! skeletal muscle of pelvic girdle
relationship: part_of UBERON:0001370
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001370 ! gluteus maximus
relationship: part_of UBERON:0001370 ! gluteus maximus
[Term]
id: UBERON:0004498
name: skeletal muscle tissue of quadriceps femoris
def: "A portion of skeletal muscle tissue that is part of a quadriceps femoris [Obol]." [OBOL:automatic]
xref: FMA:261998
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0001377
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001377 ! quadriceps femoris
relationship: part_of UBERON:0001377 ! quadriceps femoris
[Term]
id: UBERON:0004499
name: skeletal muscle tissue of tibialis anterior
def: "A portion of skeletal muscle tissue that is part of a tibialis anterior [Obol]." [OBOL:automatic]
xref: FMA:262004
is_a: UBERON:0003270 ! skeletal muscle of leg
relationship: part_of UBERON:0001385
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001385 ! tibialis anterior
relationship: part_of UBERON:0001385 ! tibialis anterior
[Term]
id: UBERON:0004500
name: skeletal muscle tissue of deltoid
def: "A portion of skeletal muscle tissue that is part of a deltoid [Obol]." [OBOL:automatic]
xref: FMA:261732
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0001476
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001476 ! deltoid
relationship: part_of UBERON:0001476 ! deltoid
[Term]
id: UBERON:0004501
name: skeletal muscle tissue of teres major
def: "A portion of skeletal muscle tissue that is part of a teres major [Obol]." [OBOL:automatic]
xref: FMA:261962
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0001478
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001478 ! teres major muscle
relationship: part_of UBERON:0001478 ! teres major muscle
[Term]
id: UBERON:0004502
name: skeletal muscle tissue of biceps brachii
def: "A portion of skeletal muscle tissue that is part of a biceps brachii [Obol]." [OBOL:automatic]
xref: FMA:261974
is_a: UBERON:0003272 ! skeletal muscle of arm
relationship: part_of UBERON:0001507
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001507 ! biceps brachii
relationship: part_of UBERON:0001507 ! biceps brachii
[Term]
id: UBERON:0004503
name: skeletal muscle tissue of digastric
def: "A portion of skeletal muscle tissue that is part of a digastric [Obol]." [OBOL:automatic]
xref: FMA:261872
is_a: UBERON:0003899 ! skeletal muscle of head
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001562
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001562 ! digastric muscle
relationship: part_of UBERON:0001562 ! digastric muscle
[Term]
id: UBERON:0004504
name: skeletal muscle tissue of mylohyoid
def: "A portion of skeletal muscle tissue that is part of a mylohyoid [Obol]." [OBOL:automatic]
xref: FMA:261878
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001564
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001564 ! mylohyoid muscle
relationship: part_of UBERON:0001564 ! mylohyoid muscle
[Term]
id: UBERON:0004505
name: skeletal muscle tissue of orbicularis oculi
def: "A portion of skeletal muscle tissue that is part of a orbicularis oculi [Obol]." [OBOL:automatic]
xref: FMA:261812
is_a: UBERON:0003269 ! skeletal muscle of eye
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001578
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001578 ! orbicularis oculi
relationship: part_of UBERON:0001578 ! orbicularis oculi
[Term]
id: UBERON:0004506
name: skeletal muscle tissue of masseter
def: "A portion of skeletal muscle tissue that is part of a masseter [Obol]." [OBOL:automatic]
xref: FMA:261824
is_a: UBERON:0003899 ! skeletal muscle of head
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001597
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001597 ! masseter muscle
relationship: part_of UBERON:0001597 ! masseter muscle
[Term]
id: UBERON:0004507
name: skeletal muscle tissue of temporalis
def: "A portion of skeletal muscle tissue that is part of a temporalis [Obol]." [OBOL:automatic]
xref: FMA:261740
is_a: UBERON:0003899 ! skeletal muscle of head
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001598
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001598 ! temporalis muscle
relationship: part_of UBERON:0001598 ! temporalis muscle
[Term]
id: UBERON:0004508
name: skeletal muscle tissue of levator palpebrae superioris
def: "A portion of skeletal muscle tissue that is part of a levator palpebrae superioris [Obol]." [OBOL:automatic]
xref: FMA:261782
is_a: UBERON:0003269 ! skeletal muscle of eye
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001604
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001604 ! levator palpebrae superioris
relationship: part_of UBERON:0001604 ! levator palpebrae superioris
[Term]
id: UBERON:0004509
name: skeletal muscle tissue of trapezius
def: "A portion of skeletal muscle tissue that is part of a trapezius [Obol]." [OBOL:automatic]
xref: FMA:261938
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002380
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002380 ! trapezius
relationship: part_of UBERON:0002380 ! trapezius
[Term]
id: UBERON:0004510
name: skeletal muscle tissue of pectoralis major
def: "A portion of skeletal muscle tissue that is part of a pectoralis major [Obol]." [OBOL:automatic]
xref: FMA:261968
is_a: UBERON:0003898 ! skeletal muscle of trunk
relationship: part_of UBERON:0002381
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002381 ! pectoralis major
relationship: part_of UBERON:0002381 ! pectoralis major
[Term]
id: UBERON:0004511
name: skeletal muscle tissue of rectus abdominis
def: "A portion of skeletal muscle tissue that is part of a rectus abdominis [Obol]." [OBOL:automatic]
xref: FMA:261924
is_a: UBERON:0003898 ! skeletal muscle of trunk
relationship: part_of UBERON:0002382
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002382 ! rectus abdominis muscle
relationship: part_of UBERON:0002382 ! rectus abdominis muscle
[Term]
id: UBERON:0004512
name: skeletal muscle tissue of supraspinatus
def: "A portion of skeletal muscle tissue that is part of a supraspinatus [Obol]." [OBOL:automatic]
xref: FMA:261956
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0002383
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002383 ! supraspinatus muscle
relationship: part_of UBERON:0002383 ! supraspinatus muscle
[Term]
id: UBERON:0004513
name: skeletal muscle tissue of internal intercostal muscle
def: "A portion of skeletal muscle tissue that is part of a internal intercostal muscle [Obol]." [OBOL:automatic]
xref: FMA:261888
is_a: UBERON:0003898 ! skeletal muscle of trunk
relationship: part_of UBERON:0002403
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002403 ! internal intercostal muscle
relationship: part_of UBERON:0002403 ! internal intercostal muscle
[Term]
id: UBERON:0004514
name: skeletal muscle tissue of transversus thoracis
def: "A portion of skeletal muscle tissue that is part of a transversus thoracis [Obol]." [OBOL:automatic]
xref: FMA:261892
is_a: UBERON:0003898 ! skeletal muscle of trunk
relationship: part_of UBERON:0002404
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002404 ! transversus thoracis
relationship: part_of UBERON:0002404 ! transversus thoracis
[Term]
id: UBERON:0004515
name: smooth muscle tissue of bronchiole
def: "A portion of smooth muscle tissue that is part of a bronchiole [Obol]." [OBOL:automatic]
synonym: "smooth muscle tissue of lobular bronchiole" EXACT [FMA:261081]
xref: FMA:261045
xref: FMA:261081
is_a: UBERON:0004233 ! lower respiratory tract smooth muscle
relationship: part_of UBERON:0002186
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002186 ! bronchiole
relationship: part_of UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0004516
name: smooth muscle tissue of terminal bronchiole
def: "A portion of smooth muscle tissue that is part of a terminal bronchiole [Obol]." [OBOL:automatic]
xref: FMA:261051
is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole
relationship: part_of UBERON:0002187
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002187 ! terminal bronchiole
relationship: part_of UBERON:0002187 ! terminal bronchiole
[Term]
id: UBERON:0004517
name: smooth muscle tissue of respiratory bronchiole
def: "A portion of smooth muscle tissue that is part of a respiratory bronchiole [Obol]." [OBOL:automatic]
xref: FMA:261055
is_a: UBERON:0004515 ! smooth muscle tissue of bronchiole
relationship: part_of UBERON:0002188
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002188 ! respiratory bronchiole
relationship: part_of UBERON:0002188 ! respiratory bronchiole
[Term]
id: UBERON:0004518
name: muscle of vertebral column
def: "A muscle that is attached to a vertebra of the vertebral column." [UBERON:cjm]
synonym: "vertebral column muscle" EXACT [FMA:22594]
xref: FMA:22594
is_a: UBERON:0001630 ! muscle organ
relationship: attaches_to UBERON:0002412
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: attaches_to UBERON:0002412 ! vertebra
relationship: attaches_to UBERON:0002412 ! vertebra
[Term]
id: UBERON:0004519
name: muscle of anal triangle
def: "A muscle organ that is part of an anal region [Obol]." [OBOL:automatic]
synonym: "anal triangle muscle" EXACT [FMA:77304]
xref: FMA:77304
is_a: UBERON:0002379 ! perineal muscle
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001353
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001353 ! anal region
relationship: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0004520
name: striated muscle tissue of prostate
def: "A portion of striated muscle tissue that is part of a prostate gland [Obol]." [OBOL:automatic]
xref: FMA:45716
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0008715 ! muscle tissue of prostate
relationship: part_of UBERON:0002367
intersection_of: UBERON:0002036 ! striated muscle tissue
intersection_of: part_of UBERON:0002367 ! prostate gland
relationship: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0004521
name: vasculature of muscle organ
def: "A vasculature that is part of a muscle organ [Obol]." [OBOL:automatic]
synonym: "muscular organ vasculature" EXACT [FMA:87123]
xref: FMA:87123
is_a: UBERON:0004522 ! vasculature of musculoskeletal system
is_a: UBERON:0006876 ! vasculature of organ
relationship: part_of UBERON:0001630
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0004522
name: vasculature of musculoskeletal system
def: "A vasculature that is part of a musculoskeletal system [Obol]." [OBOL:automatic]
xref: FMA:239607
is_a: UBERON:0002049 ! vasculature
relationship: part_of UBERON:0002204
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002204 ! musculoskeletal system
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0004523
name: papillary muscle of right ventricle
def: "A papillary muscle that is part of a right ventricle [Obol]." [OBOL:automatic]
xref: EHDAA2:0004544
xref: FMA:7259
is_a: UBERON:0002494 ! papillary muscle
relationship: part_of UBERON:0002080
intersection_of: UBERON:0002494 ! papillary muscle
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0002080 ! heart right ventricle
[Term]
id: UBERON:0004524
name: papillary muscle of left ventricle
def: "A papillary muscle that is part of a left ventricle [Obol]." [OBOL:automatic]
xref: EHDAA2:0001398
xref: FMA:9352
is_a: UBERON:0002494 ! papillary muscle
relationship: part_of UBERON:0002084
intersection_of: UBERON:0002494 ! papillary muscle
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0002084 ! heart left ventricle
[Term]
id: UBERON:0004525
name: cardiac muscle tissue of trabecula carnea of right ventricle
def: "A portion of trabecula carnea cardiac muscle tissue that is part of a right ventricle [Obol]." [OBOL:automatic]
xref: FMA:84429
is_a: UBERON:0003381 ! cardiac muscle of right ventricle
is_a: UBERON:0003452 ! trabecula carnea cardiac muscle tissue
relationship: part_of UBERON:0002080
intersection_of: UBERON:0003452 ! trabecula carnea cardiac muscle tissue
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0002080 ! heart right ventricle
[Term]
id: UBERON:0004526
name: cardiac muscle tissue of trabecula carnea of left ventricle
def: "A portion of trabecula carnea cardiac muscle tissue that is part of a left ventricle [Obol]." [OBOL:automatic]
xref: FMA:84430
is_a: UBERON:0003382 ! cardiac muscle of left ventricle
is_a: UBERON:0003452 ! trabecula carnea cardiac muscle tissue
relationship: part_of UBERON:0002084
intersection_of: UBERON:0003452 ! trabecula carnea cardiac muscle tissue
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0002084 ! heart left ventricle
[Term]
id: UBERON:0004527
name: alveolar process of maxilla
alt_id: UBERON:0001696
def: "thickened ridge of bone that contains the tooth sockets on bones that bear teeth. In humans, the tooth-bearing bones are the maxilla and the mandible. The mineral content of alveolar bone is mostly hydroxyapatite, which is also found in enamel as the main inorganic substance[WP]." [Wikipedia:Alveolar_process]
synonym: "alveolar margin of maxilla" EXACT []
synonym: "alveolar part of maxilla" EXACT []
synonym: "alveolar ridge of maxilla" EXACT []
synonym: "lower alveolar ridge" EXACT []
synonym: "maxilla alveolar process" EXACT []
synonym: "posterior alveolar ridge" EXACT []
synonym: "processus alveolaris (maxilla)" EXACT []
xref: FMA:52897
xref: http://upload.wikimedia.org/wikipedia/commons/7/71/Gray157.png
xref: MA:0001492
xref: SCTID:245795005
is_a: UBERON:0004103 ! alveolar ridge
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002397
intersection_of: UBERON:0004103 ! alveolar ridge
intersection_of: part_of UBERON:0002397 ! maxilla
relationship: part_of UBERON:0002397 ! maxilla
[Term]
id: UBERON:0004528
name: alveolar ridge of mandible
def: "The alveolar part of mandible is the part of the mandible, adjacent to the teeth, containing the dental alveolus. [WP,unvetted]." [Wikipedia:Alveolar_part_of_mandible]
synonym: "alveolar margin of mandible" EXACT []
synonym: "alveolar part of mandible" EXACT []
synonym: "alveolar process of mandible" EXACT [FMA:52832]
synonym: "anterior alveolar ridge" EXACT []
synonym: "pars alveolaris (mandibula)" EXACT [FMA:52832]
synonym: "pars alveolaris mandibulae" RELATED LATIN [Wikipedia:Alveolar_part_of_mandible]
synonym: "upper alveolar ridge" EXACT []
xref: FMA:52832
xref: http://upload.wikimedia.org/wikipedia/commons/9/9f/Mandibule.jpg
xref: SCTID:245791001
is_a: UBERON:0004103 ! alveolar ridge
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001684
intersection_of: UBERON:0004103 ! alveolar ridge
intersection_of: part_of UBERON:0001684 ! mandible
relationship: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0004529
name: anatomical projection
def: "a projection or outgrowth of tissue from a larger body or organ." [Wikipedia:Process_(anatomy)]
synonym: "anatomical process" BROAD []
synonym: "flange" NARROW [VSAO:0000180]
synonym: "flanges" NARROW PLURAL [VSAO:0000180]
synonym: "lamella" NARROW [VSAO:0000180]
synonym: "lamellae" NARROW PLURAL [VSAO:0000180]
synonym: "lamina" NARROW [VSAO:0000180]
synonym: "laminae" NARROW [VSAO:0000180]
synonym: "organ process" NARROW []
synonym: "process" BROAD [VSAO:0000180]
synonym: "process of organ" NARROW []
synonym: "processes" NARROW PLURAL [VSAO:0000180]
synonym: "projection" EXACT []
synonym: "projection" NARROW [VSAO:0000180]
synonym: "projections" NARROW PLURAL [VSAO:0000180]
synonym: "ridge" NARROW [VSAO:0000180]
synonym: "ridges" NARROW PLURAL [VSAO:0000180]
synonym: "shelf" NARROW [VSAO:0000180]
synonym: "shelves" NARROW PLURAL [VSAO:0000180]
xref: AAO:0010278
xref: FMA:67601
xref: galen:Ridge
xref: HAO:0000822
xref: TAO:0001834
xref: VSAO:0000180
xref: XAO:0004020
property_value: UBPROP:0000001 "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, or tissue.[AAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, tissue, fin, scale, etc.[TAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, tissue, fin, scale, etc.[VSAO]" xsd:string
is_a: UBERON:0000063 ! organ segment
[Term]
id: UBERON:0004530
name: bony projection
def: "Anatomical projection that is composed of bone tissue." [VSAO:wd]
subset: vertebrate_core
synonym: "bone process" EXACT [FMA:75433]
synonym: "projection of bone" EXACT []
xref: FMA:75433
xref: ZFA:0001637
is_a: UBERON:0004529 ! anatomical projection
relationship: composed_primarily_of UBERON:0002481
intersection_of: UBERON:0004529 ! anatomical projection
intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue
relationship: composed_primarily_of UBERON:0002481 ! bone tissue
[Term]
id: UBERON:0004531
name: left side of organism
is_obsolete: true
[Term]
id: UBERON:0004532
name: right side of organism
is_obsolete: true
[Term]
id: UBERON:0004533
name: left testicle
def: "A testis that is part of a left side of organism [Obol]." [OBOL:automatic]
synonym: "left testis" EXACT [MA:0001746]
xref: FMA:7212
xref: MA:0001746
xref: ncithesaurus:Left_Testis
xref: SCTID:367720001
is_a: UBERON:0000473 ! testis
relationship: in_left_side_of UBERON:0000468
intersection_of: UBERON:0000473 ! testis
intersection_of: in_left_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0004534
name: right testicle
def: "A testis that is part of a right side of organism [Obol]." [OBOL:automatic]
synonym: "right testis" EXACT [MA:0001747]
xref: FMA:7211
xref: MA:0001747
xref: ncithesaurus:Right_Testis
xref: OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA
xref: SCTID:367719007
is_a: UBERON:0000473 ! testis
relationship: in_right_side_of UBERON:0000468
intersection_of: UBERON:0000473 ! testis
intersection_of: in_right_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_right_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0004535
name: cardiovascular system
def: "Anatomical system that has as its parts the heart and blood vessels." [BTO:0000088]
comment: Usage notes: we treat cardiovascular as part of circulatory system, with the latter including other kinds of circulation, including lymph.
subset: uberon_slim
subset: vertebrate_core
synonym: "CV system" RELATED [BTO:0000088]
synonym: "Herz und Gefaesssystem" RELATED [BTO:0000088]
xref: AAO:0011001
xref: BILA:0000016
xref: BTO:0000088
xref: EFO:0000791
xref: EHDAA2:0000216
xref: EHDAA:394
xref: EMAPA:16104
xref: EMAPA:16370
xref: EV:0100017
xref: FMA:7161
xref: GAID:467
xref: MA:0000010
xref: MAT:0000016
xref: MESH:A.07
xref: MIAA:0000016
xref: ncithesaurus:Cardiovascular_System
xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA
xref: SCTID:278198007
xref: TAO:0000010
xref: VHOG:0000302
xref: XAO:0000100
xref: XAO:0001010
xref: ZFA:0000010
is_a: UBERON:0000467 ! anatomical system
relationship: has_part UBERON:0000948
relationship: has_part UBERON:0001981
relationship: part_of UBERON:0001009
intersection_of: UBERON:0000467 ! anatomical system
intersection_of: has_part UBERON:0000948 ! heart
intersection_of: has_part UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001009 ! circulatory system
relationship: has_part UBERON:0000948 ! heart
relationship: has_part UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0004536
name: lymph vasculature
def: "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105]
subset: vertebrate_core
synonym: "lymphatic trunks and ducts" EXACT [FMA:63815]
synonym: "lymphatic vasculature" EXACT []
synonym: "lymphatic vessel network" EXACT []
synonym: "lymphatic vessels set" EXACT [FMA:63815]
synonym: "set of lymphatic vessels" EXACT []
synonym: "trunci et ductus lymphatici" EXACT [FMA:63815, FMA:TA]
xref: FMA:63815
xref: TAO:0005105
xref: ZFA:0005105
property_value: UBPROP:0000001 "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep.[TAO]" xsd:string
is_a: UBERON:0002049 ! vasculature
relationship: has_part UBERON:0002391
intersection_of: UBERON:0002049 ! vasculature
intersection_of: has_part UBERON:0002391 ! lymph
relationship: has_part UBERON:0002391 ! lymph
relationship: part_of UBERON:0002465 ! lymphoid system
[Term]
id: UBERON:0004537
name: blood vasculature
def: "a vascular network consisting of blood vessels." [UBERON:cjm]
synonym: "blood vascular network" EXACT []
synonym: "set of blood vessels" EXACT []
xref: TAO:0001079
xref: ZFA:0001079
is_a: UBERON:0002049 ! vasculature
relationship: composed_primarily_of UBERON:0001981
intersection_of: UBERON:0002049 ! vasculature
intersection_of: composed_primarily_of UBERON:0001981 ! blood vessel
relationship: composed_primarily_of UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0004535 ! cardiovascular system
[Term]
id: UBERON:0004538
name: left kidney
def: "A kidney that is part of a left side of organism [Obol]." [OBOL:automatic]
xref: FMA:7205
xref: MA:0001655
xref: ncithesaurus:Left_Kidney
xref: SCTID:362209008
is_a: UBERON:0002113 ! kidney
relationship: in_left_side_of UBERON:0000468
intersection_of: UBERON:0002113 ! kidney
intersection_of: in_left_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0004539
name: right kidney
def: "A kidney that is part of a right side of organism [Obol]." [OBOL:automatic]
xref: FMA:7204
xref: MA:0001683
xref: ncithesaurus:Right_Kidney
xref: SCTID:362208000
is_a: UBERON:0002113 ! kidney
relationship: in_right_side_of UBERON:0000468
intersection_of: UBERON:0002113 ! kidney
intersection_of: in_right_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_right_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0004540
name: proper plantar digital artery
def: "." [Wikipedia:Proper_plantar_digital_arteries]
comment: the MA term, even though plural, represents the singular, as it is an isa child of artery. We use the FMA set term as it is the closest match, but the semantics of set terms are unclear
synonym: "arteriae digitales plantares propriae" EXACT [FMA:71564, FMA:TA]
synonym: "arteriae digitales plantares propriae" RELATED LATIN [Wikipedia:Proper_plantar_digital_arteries]
synonym: "plantar digital artery proper" EXACT []
synonym: "proper plantar digital arteries" EXACT [MA:0001968]
xref: FMA:71564
xref: http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray555.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray1237.svg/200px-Gray1237.svg.png
xref: MA:0001968
is_a: UBERON:0006138 ! plantar digital artery
[Term]
id: UBERON:0004544
name: epididymis epithelium
def: "A simple columnar epithelium that is part of a epididymis [Obol]." [OBOL:automatic]
synonym: "Epididymis epithelium" EXACT [FMA:19153]
synonym: "epithelium of epididymis" EXACT [FMA:19153]
xref: EMAPA:30445
xref: FMA:19153
xref: MA:0002825
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001301
intersection_of: UBERON:0000485 ! simple columnar epithelium
intersection_of: part_of UBERON:0001301 ! epididymis
relationship: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0004545
name: external capsule
def: "External capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The external capsule is a sheet-like fiber bundle located lateral to the to the putamen and globus pallidus which projects dorsally to the white matter underlying the cerebral cortex[FMA]." [FMA:61959, Wikipedia:External_capsule]
synonym: "capsula externa" RELATED LATIN [Wikipedia:External_capsule]
xref: FMA:61959
xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Telencephalon-Horiconatal.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg
xref: MA:0002896
xref: ncithesaurus:External_Capsule
xref: NIF_GrossAnatomy:nlx_anat_1010013
xref: SCTID:279300007
is_a: UBERON:0002437 ! cerebral white matter
[Term]
id: UBERON:0004546
name: cribriform plate
def: "The cribriform plate of the ethmoid bone (horizontal lamina) is received into the ethmoidal notch of the frontal bone and roofs in the nasal cavities. Projecting upward from the middle line of this plate is a thick, smooth, triangular process, the crista galli, so called from its resemblance to a cock's comb. The long thin posterior border of the crista galli serves for the attachment of the falx cerebri. Its anterior border, short and thick, articulates with the frontal bone, and presents two small projecting alæ, which are received into corresponding depressions in the frontal bone and complete the foramen cecum. Its sides are smooth, and sometimes bulging from the presence of a small air sinus in the interior. On either side of the crista galli, the cribriform plate is narrow and deeply grooved; it supports the olfactory bulb and is perforated by foramina for the passage of the olfactory nerves. The foramina in the middle of the groove are small and transmit the nerves to the roof of the nasal cavity; those at the medial and lateral parts of the groove are larger—the former transmit the nerves to the upper part of the nasal septum, the latter those to the superior nasal concha. At the front part of the cribriform plate, on either side of the crista galli, is a small fissure which is occupied by a process of dura mater. Lateral to this fissure is a notch or foramen which transmits the nasociliary nerve; from this notch a groove extends backward to the anterior ethmoidal foramen. [WP,unvetted]." [Wikipedia:Cribriform_plate]
synonym: "cribiform plate of ethmoid bone" EXACT [Wikipedia:Cribriform_plate]
synonym: "ethmoid bone lamina cribrosa" RELATED [BTO:0004141]
synonym: "lamina cribrosa of ethmoid bone" RELATED [BTO:0004141]
synonym: "lamina cribrosa ossis ethmoidalis" RELATED LATIN [Wikipedia:Cribriform_plate]
xref: BTO:0004141
xref: EMAPA:19201
xref: FMA:52890
xref: http://upload.wikimedia.org/wikipedia/commons/9/93/Gray149.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray149.png/200px-Gray149.png
xref: MA:0002898
xref: SCTID:282814006
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001679 {source="MA"} ! ethmoid bone
[Term]
id: UBERON:0004547
name: decidua capsularis
def: "Endometrium that covers the implanted blastocyst." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm]
xref: FMA:86478
xref: MA:0002906
xref: ncithesaurus:Decidua_Capsularis
xref: SCTID:255498003
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0002450 ! decidua
[Term]
id: UBERON:0004548
name: left eye
def: "An eye that is part of a left side of organism [Obol]." [OBOL:automatic]
synonym: "left eyeball" EXACT [FMA:12515]
synonym: "left orbital part of face" NARROW [FMA:54450]
synonym: "left orbital region" NARROW [FMA:54450]
xref: FMA:12515
xref: MA:0002949
xref: SCTID:362503005
is_a: UBERON:0000970 ! eye
relationship: in_left_side_of UBERON:0000468
intersection_of: UBERON:0000970 ! eye
intersection_of: in_left_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0004549
name: right eye
def: "An eye that is part of a right side of organism [Obol]." [OBOL:automatic]
synonym: "right eyeball" EXACT [FMA:12514]
synonym: "right orbital part of face" NARROW [FMA:54449]
synonym: "right orbital region" NARROW [FMA:54449]
xref: FMA:12514
xref: MA:0002950
xref: SCTID:362502000
is_a: UBERON:0000970 ! eye
relationship: in_right_side_of UBERON:0000468
intersection_of: UBERON:0000970 ! eye
intersection_of: in_right_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_right_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0004550
name: gastroesophageal sphincter
def: "A sphincter muscle that is part of a cardia of stomach [Obol]." [OBOL:automatic]
comment: todo - split? check FMA:63048
synonym: "cardiac sphincter" RELATED [MA:0002951]
synonym: "gastroesophageal sphincter" EXACT [FMA:14915]
synonym: "inferior esophageal sphincter" EXACT [FMA:14915]
synonym: "lower esophageal sphincter" RELATED [MA:0002951]
xref: FMA:14915
xref: galen:LowerEsophagealSphincter
xref: MA:0002951
xref: ncithesaurus:Lower_Esophageal_Sphincter
xref: SCTID:267809009
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0011185 ! gastrointestinal sphincter
relationship: part_of UBERON:0001162
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001162 ! cardia of stomach
relationship: part_of UBERON:0001162 ! cardia of stomach
[Term]
id: UBERON:0004551
name: set of proper plantar digital arteries
comment: this class was made obsolete, as uberon does not include 'Set of X' classes. For now, the FMA class for set of plantar digital arteries proper is under UBERON:0004540, but it is unclear if this is correct
synonym: "arteriae digitales plantares propriae" EXACT [FMA:71564, FMA:TA]
synonym: "plantar digital arteries proper" EXACT [FMA:71564]
synonym: "plantar digital arteries proper set" EXACT [FMA:71564]
is_obsolete: true
[Term]
id: UBERON:0004552
name: digital artery
def: "An artery that is part of a digit [Obol]." [OBOL:automatic]
comment: check part_of - do we need term for digit + metacarpal/tarsal bones?
xref: MA:0001941
xref: SCTID:181335004
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003514 ! limb blood vessel
relationship: part_of UBERON:0002544
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002544 ! digit
relationship: part_of UBERON:0002544 ! digit
[Term]
id: UBERON:0004553
name: forelimb digital artery
def: "A digital artery that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "digital artery of hand" EXACT []
synonym: "forelimb digital arteries" EXACT [MA:0001953]
xref: MA:0001953
xref: SCTID:265791006
is_a: UBERON:0003515 ! forelimb blood vessel
is_a: UBERON:0004552 ! digital artery
relationship: part_of UBERON:0002102
intersection_of: UBERON:0004552 ! digital artery
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0004554
name: hindlimb digital artery
def: "A digital artery that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "digital artery of foot" EXACT [FMA:69713]
synonym: "hindlimb digital arteries" EXACT [MA:0001964]
xref: FMA:69713
xref: MA:0001964
is_a: UBERON:0003516 ! hindlimb blood vessel
is_a: UBERON:0004552 ! digital artery
relationship: part_of UBERON:0002103
intersection_of: UBERON:0004552 ! digital artery
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0004561
name: proper palmar digital vein
comment: Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal.
synonym: "common palmar digital venous tributary" EXACT [FMA:22926]
synonym: "distal palmar digital vein" EXACT [Wikipedia:Palmar_digital_veins]
synonym: "proper palmal vein" EXACT [MA:0002126]
synonym: "proper palmar vein" EXACT [MA:0002126]
synonym: "tributary of common palmar digital vein" EXACT [FMA:22926]
xref: FMA:22926
xref: MA:0002126
is_a: UBERON:0004563 ! forelimb digital vein
relationship: tributary_of UBERON:0001412 {source="FMA/obol"} ! common palmar digital vein
[Term]
id: UBERON:0004562
name: digital vein
comment: check part_of - do we need term for digit + metacarpal/tarsal bones?
xref: MA:0002101
xref: ncithesaurus:Digital_Vein
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003514 ! limb blood vessel
relationship: part_of UBERON:0002470 ! autopod region
[Term]
id: UBERON:0004563
name: forelimb digital vein
synonym: "forelimb digital veins" EXACT [MA:0002120]
xref: MA:0002120
is_a: UBERON:0003515 ! forelimb blood vessel
is_a: UBERON:0004562 ! digital vein
relationship: part_of UBERON:0002102
intersection_of: UBERON:0004562 ! digital vein
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0004564
name: hindlimb digital vein
def: "A digital vein that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hindlimb digital veins" EXACT [MA:0002133]
xref: MA:0002133
is_a: UBERON:0003516 ! hindlimb blood vessel
is_a: UBERON:0004562 ! digital vein
relationship: part_of UBERON:0002103
intersection_of: UBERON:0004562 ! digital vein
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0004571
name: systemic arterial system
def: "the part of the cardiovascular system which carries oxygenated blood away from the heart to the body, and returns deoxygenated blood back to the heart." [Wikipedia:Systemic_circulation#Arteries]
synonym: "Systemic arterial circulatory system" EXACT [FMA:45623]
xref: FMA:45623
is_a: UBERON:0007798 {source="MA-inferred"} ! vascular system
relationship: part_of UBERON:0004572 ! arterial system
[Term]
id: UBERON:0004572
name: arterial system
def: "The arterial system is the higher-pressure portion of the circulatory system." [BTO:0004690]
xref: BTO:0004690
xref: EHDAA2:0000143
xref: EHDAA:396
xref: EMAPA:16201
xref: EMAPA:16371
xref: MA:0002719
xref: SCTID:362030008
xref: VHOG:0000273
is_a: UBERON:0007798 {source="MA"} ! vascular system
relationship: part_of UBERON:0004535 {source="EHDAA2"} ! cardiovascular system
[Term]
id: UBERON:0004573
name: systemic artery
def: "Systemic arteries are the arteries of the systemic circulation, which is the part of the cardiovascular system which carries oxygenated blood away from the heart, to the body, and returns deoxygenated blood back to the heart." [Wikipedia:Artery#Systemic_arteries]
synonym: "systemic arterial subtree" EXACT [FMA:66464]
xref: FMA:66464
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0004571
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0004571 ! systemic arterial system
relationship: part_of UBERON:0004571 ! systemic arterial system
[Term]
id: UBERON:0004581
name: systemic venous system
def: "Subdivision of cardiovascular system which has as its parts the right side of heart, the superior vena cava and the inferior vena cava[FMA] In human anatomy, the systemic venous system refers to veins that drain into the right atrium without passing through two vascular beds (i.e. they originate from a set of capillaries and do not pass through a second set of capillaries before reaching the right side of the heart). The term systemic venous system is often used to differentiate veins from veins that drain the pulmonary system (the pulmonary venous system) and veins that drain the digestive tract (the portal venous system). Large veins that are considered part of the systemic venous system are the: Superior vena cava; Inferior vena cava[WP]." [FMA:45626, Wikipedia:Systemic_venous_system]
synonym: "Systemic venous circulatory system" EXACT [FMA:45626]
xref: BTO:0004692
xref: EHDAA2:0002171
xref: EHDAA:486
xref: FMA:45626
xref: ncithesaurus:Venous_System
xref: VHOG:0000277
is_a: UBERON:0002049 ! vasculature
relationship: part_of UBERON:0004582 ! venous system
[Term]
id: UBERON:0004582
name: venous system
synonym: "vein system" EXACT []
xref: BTO:0004692
xref: EHDAA2:0002171
xref: EHDAA:486
xref: EMAPA:16240
xref: MA:0002720
xref: ncithesaurus:Venous_System
xref: SCTID:362060003
xref: VHOG:0000277
is_a: UBERON:0007798 {source="MA"} ! vascular system
[Term]
id: UBERON:0004590
name: sphincter muscle
def: "a structure, usually a circular muscle, that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning." [Wikipedia:Sphincter]
comment: FMA class is not a subtype of muscle
synonym: "circular muscle" RELATED []
synonym: "sphincter" EXACT []
xref: FMA:75004
xref: ncithesaurus:Sphincter
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0004601
name: rib 1
def: "The first rib is the most curved and usually the shortest of all the ribs; it is broad and flat, its surfaces looking upward and downward, and its borders inward and outward. The head is small, rounded, and possesses only a single articular facet, for articulation with the body of the first thoracic vertebra. The neck is narrow and rounded. The tubercle, thick and prominent, is placed on the outer border. There is no angle, but at the tubercle the rib is slightly bent, with the convexity upward, so that the head of the bone is directed downward. The upper surface of the body is marked by two shallow grooves, separated from each other by a slight ridge prolonged internally into a tubercle, the scalene tubercle, for the attachment of the Scalenus anterior; the anterior groove transmits the subclavian vein, the posterior the subclavian artery and the lowest trunk of the brachial plexus. Behind the posterior groove is a rough area for the attachment of the Scalenus medius. The under surface is smooth, and destitute of a costal groove. The outer border is convex, thick, and rounded, and at its posterior part gives attachment to the first digitation of the Serratus anterior. The inner border is concave, thin, and sharp, and marked about its center by the scalene tubercle. The anterior extremity is larger and thicker than that of any of the other ribs. [WP,unvetted]." [Wikipedia:First_rib]
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "costa prima" RELATED LATIN [Wikipedia:First_rib]
synonym: "Costa prima (I)" EXACT [FMA:7597]
synonym: "first rib" EXACT [FMA:7597]
xref: FMA:7597
xref: http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray124.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray124.png/200px-Gray124.png
xref: MA:0001401
xref: ncithesaurus:Rib_1
xref: SCTID:182016005
property_value: "rib_number" "1" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004602
name: rib 2
def: "The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the Serratus anterior; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted]." [Wikipedia:Second_rib]
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "costa secunda" RELATED LATIN [Wikipedia:Second_rib]
synonym: "Costa secunda (II)" EXACT [FMA:7620]
synonym: "second rib" EXACT [FMA:7620]
xref: FMA:7620
xref: http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray125.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray125.png/200px-Gray125.png
xref: MA:0001402
xref: ncithesaurus:Rib_2
xref: SCTID:244656007
property_value: "rib_number" "2" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004603
name: rib 3
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "third rib" EXACT [FMA:7638]
xref: FMA:7638
xref: MA:0001403
xref: ncithesaurus:Rib_3
xref: SCTID:244658008
property_value: "rib_number" "3" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004604
name: rib 4
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "fourth rib" EXACT [FMA:7749]
xref: FMA:7749
xref: MA:0001404
xref: ncithesaurus:Rib_4
xref: SCTID:244659000
property_value: "rib_number" "4" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004605
name: rib 5
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "fifth rib" EXACT [FMA:7776]
xref: FMA:7776
xref: MA:0001405
xref: ncithesaurus:Rib_5
xref: SCTID:244660005
property_value: "rib_number" "5" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004606
name: rib 6
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "sixth rib" EXACT [FMA:8147]
xref: FMA:8147
xref: MA:0001406
xref: ncithesaurus:Rib_6
xref: SCTID:244661009
property_value: "rib_number" "6" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004607
name: rib 7
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "seventh rib" EXACT [FMA:7830]
xref: FMA:7830
xref: MA:0001407
xref: ncithesaurus:Rib_7
xref: SCTID:244662002
property_value: "rib_number" "7" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004608
name: rib 9
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "ninth rib" EXACT [FMA:8337]
xref: FMA:8337
xref: MA:0001409
xref: ncithesaurus:Rib_9
xref: SCTID:244664001
property_value: "rib_number" "9" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
is_a: UBERON:0002238 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! false rib
[Term]
id: UBERON:0004609
name: rib 10
def: "The tenth rib has only a single articular facet on its head. [WP,unvetted]." [Wikipedia:Tenth_rib]
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "tenth rib" EXACT [FMA:8418]
xref: FMA:8418
xref: http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray126.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Gray126.png/200px-Gray126.png
xref: MA:0001410
xref: ncithesaurus:Rib_10
xref: SCTID:244665000
property_value: "rib_number" "10" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
is_a: UBERON:0002238 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! false rib
[Term]
id: UBERON:0004610
name: rib 11
def: "The eleventh rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The eleventh has a slight angle and a shallow costal groove. [WP,unvetted]." [Wikipedia:Eleventh_rib]
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "eleventh rib" EXACT [FMA:8499]
xref: FMA:8499
xref: http://upload.wikimedia.org/wikipedia/commons/d/db/Gray127.png
xref: MA:0001411
xref: ncithesaurus:Rib_11
xref: SCTID:244666004
property_value: "rib_number" "11" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
is_a: UBERON:0002239 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! floating rib
[Term]
id: UBERON:0004611
name: rib 12
def: "In humans: The twelfth rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The twelfth has angle nor costal groove; it is much shorter than the eleventh rib, and its head is inclined slightly downward. Sometimes the twelfth rib is even shorter than the first rib. [WP,unvetted]." [Wikipedia:Twelfth_rib]
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "twelfth rib" EXACT [FMA:8515]
xref: FMA:8515
xref: http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray128.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray128.png/200px-Gray128.png
xref: MA:0001412
xref: ncithesaurus:Rib_12
xref: SCTID:244667008
property_value: "rib_number" "12" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
is_a: UBERON:0002239 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! floating rib
[Term]
id: UBERON:0004612
name: mammalian cervical vertebra 3
comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae
subset: defined_by_ordinal_series
synonym: "C3 vertebra" EXACT [FMA:12521]
synonym: "cervical vertebra 3" EXACT [MA:0001423]
synonym: "third cervical vertebra" EXACT [FMA:12521]
xref: EMAPA:19433
xref: FMA:12521
xref: MA:0001423
xref: ncithesaurus:C3_Vertebra
xref: SCTID:181823007
property_value: "vertebra_number" "3" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra
relationship: anteriorly_connected_to UBERON:0001093 {source="FMA"} ! second cervical vertebra
[Term]
id: UBERON:0004613
name: mammalian cervical vertebra 4
comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae
subset: defined_by_ordinal_series
synonym: "C4 vertebra" EXACT [FMA:12522]
synonym: "cervical vertebra 4" EXACT [MA:0001424]
synonym: "fourth cervical vertebra" EXACT [FMA:12522]
xref: EMAPA:19434
xref: FMA:12522
xref: MA:0001424
xref: ncithesaurus:C4_Vertebra
xref: SCTID:181824001
property_value: "vertebra_number" "4" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra
relationship: anteriorly_connected_to UBERON:0004612 {source="FMA"} ! mammalian cervical vertebra 3
[Term]
id: UBERON:0004614
name: mammalian cervical vertebra 5
comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae
subset: defined_by_ordinal_series
synonym: "C5 vertebra" EXACT [FMA:12523]
synonym: "fifth cervical vertebra" EXACT [FMA:12523]
xref: EMAPA:19435
xref: FMA:12523
xref: MA:0001425
xref: ncithesaurus:C5_Vertebra
xref: SCTID:181825000
property_value: "vertebra_number" "5" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra
relationship: anteriorly_connected_to UBERON:0004613 {source="FMA"} ! mammalian cervical vertebra 4
[Term]
id: UBERON:0004615
name: mammalian cervical vertebra 6
comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae
subset: defined_by_ordinal_series
synonym: "C6 vertebra" EXACT [FMA:12524]
synonym: "cervical vertebra 6" EXACT [MA:0001426]
synonym: "sixth cervical vertebra" EXACT [FMA:12524]
xref: EMAPA:19466
xref: FMA:12524
xref: MA:0001426
xref: ncithesaurus:C6_Vertebra
xref: SCTID:181826004
property_value: "vertebra_number" "6" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra
relationship: anteriorly_connected_to UBERON:0004614 {source="FMA"} ! mammalian cervical vertebra 5
[Term]
id: UBERON:0004616
name: mammalian cervical vertebra 7
comment: elements are to be defined spatially/topologically. all mammals have 7 cervical vertebrae
subset: defined_by_ordinal_series
synonym: "C7 vertebra" EXACT [FMA:12525]
synonym: "cervical vertebra 7" EXACT [MA:0001427]
synonym: "prominent vertebra" EXACT [FMA:12525]
synonym: "seventh cervical vertebra" EXACT [FMA:12525]
synonym: "vertebra prominens (CVII)" EXACT [FMA:12525]
xref: EMAPA:19467
xref: FMA:12525
xref: MA:0001427
xref: ncithesaurus:C7_Vertebra
xref: SCTID:181827008
property_value: "vertebra_number" "7" xsd:nonNegativeInteger
is_a: UBERON:0002413 ! cervical vertebra
relationship: anteriorly_connected_to UBERON:0004615 {source="FMA"} ! mammalian cervical vertebra 6
[Term]
id: UBERON:0004617
name: lumbar vertebra 1
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "first lumbar vertebra" EXACT [FMA:13072]
synonym: "L1 vertebra" EXACT [FMA:13072]
xref: EMAPA:19472
xref: FMA:13072
xref: MA:0001428
xref: ncithesaurus:L1_Vertebra
xref: SCTID:181841004
is_a: UBERON:0002414 ! lumbar vertebra
relationship: anteriorly_connected_to UBERON:0004636 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! thoracic vertebra 12
[Term]
id: UBERON:0004618
name: lumbar vertebra 2
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "L2 vertebra" EXACT [FMA:13073]
synonym: "second lumbar vertebra" EXACT [FMA:13073]
xref: EMAPA:19570
xref: FMA:13073
xref: MA:0001429
xref: ncithesaurus:L2_Vertebra
xref: SCTID:181842006
is_a: UBERON:0002414 ! lumbar vertebra
relationship: anteriorly_connected_to UBERON:0004617 {source="FMA"} ! lumbar vertebra 1
[Term]
id: UBERON:0004619
name: lumbar vertebra 3
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "L3 vertebra" EXACT [FMA:13074]
synonym: "third lumbar vertebra" EXACT [FMA:13074]
xref: EMAPA:19571
xref: FMA:13074
xref: MA:0001430
xref: ncithesaurus:L3_Vertebra
xref: SCTID:181843001
is_a: UBERON:0002414 ! lumbar vertebra
relationship: anteriorly_connected_to UBERON:0004618 {source="FMA"} ! lumbar vertebra 2
[Term]
id: UBERON:0004620
name: lumbar vertebra 4
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "fourth lumbar vertebra" EXACT [FMA:13075]
synonym: "L4 vertebra" EXACT [FMA:13075]
xref: EMAPA:19572
xref: FMA:13075
xref: MA:0001431
xref: ncithesaurus:L4_Vertebra
xref: SCTID:181844007
is_a: UBERON:0002414 ! lumbar vertebra
relationship: anteriorly_connected_to UBERON:0004619 {source="FMA"} ! lumbar vertebra 3
[Term]
id: UBERON:0004621
name: lumbar vertebra 5
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "fifth lumbar vertebra" EXACT [FMA:13076]
synonym: "L5 vertebra" EXACT [FMA:13076]
xref: EMAPA:19573
xref: FMA:13076
xref: MA:0001432
xref: ncithesaurus:L5_Vertebra
xref: SCTID:181845008
is_a: UBERON:0002414 ! lumbar vertebra
relationship: anteriorly_connected_to UBERON:0004620 {source="FMA"} ! lumbar vertebra 4
[Term]
id: UBERON:0004622
name: sacral vertebra 1
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "First sacral segment" EXACT [FMA:13077]
synonym: "first sacral vertebra" EXACT [FMA:13077]
synonym: "First segment of sacrum" EXACT [FMA:13077]
synonym: "S1 vertebra" EXACT [FMA:13077]
xref: EMAPA:19588
xref: FMA:13077
xref: MA:0001434
xref: ncithesaurus:S1_Vertebra
xref: SCTID:181846009
is_a: UBERON:0001094 ! sacral vertebra
[Term]
id: UBERON:0004623
name: sacral vertebra 2
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "S2 vertebra" EXACT [FMA:13078]
synonym: "Second sacral segment" EXACT [FMA:13078]
synonym: "second sacral vertebra" EXACT [FMA:13078]
synonym: "Second segment of sacrum" EXACT [FMA:13078]
xref: EMAPA:19589
xref: FMA:13078
xref: MA:0001435
xref: ncithesaurus:S2_Vertebra
xref: SCTID:181847000
is_a: UBERON:0001094 ! sacral vertebra
[Term]
id: UBERON:0004624
name: sacral vertebra 3
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "S3 vertebra" EXACT [FMA:13079]
synonym: "Third sacral segment" EXACT [FMA:13079]
synonym: "third sacral vertebra" EXACT [FMA:13079]
synonym: "Third segment of sacrum" EXACT [FMA:13079]
xref: EMAPA:19590
xref: FMA:13079
xref: MA:0001436
xref: ncithesaurus:S3_Vertebra
xref: SCTID:181848005
is_a: UBERON:0001094 ! sacral vertebra
[Term]
id: UBERON:0004625
name: sacral vertebra 4
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Fourth sacral segment" EXACT [FMA:13080]
synonym: "fourth sacral vertebra" EXACT [FMA:13080]
synonym: "Fourth segment of sacrum" EXACT [FMA:13080]
synonym: "S4 vertebra" EXACT [FMA:13080]
xref: EMAPA:19591
xref: FMA:13080
xref: MA:0001437
xref: ncithesaurus:S4_Vertebra
xref: SCTID:181849002
is_a: UBERON:0001094 ! sacral vertebra
[Term]
id: UBERON:0004626
name: thoracic vertebra 1
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "First dorsal vertebra" EXACT [FMA:9165]
synonym: "first thoracic vertebra" EXACT [FMA:9165]
synonym: "T1 vertebra" EXACT [FMA:9165]
xref: EMAPA:19542
xref: FMA:9165
xref: MA:0001438
xref: ncithesaurus:T1_Vertebra
xref: SCTID:181828003
is_a: UBERON:0002347 ! thoracic vertebra
relationship: anteriorly_connected_to UBERON:0004616 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! mammalian cervical vertebra 7
[Term]
id: UBERON:0004627
name: thoracic vertebra 2
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Second dorsal vertebra" EXACT [FMA:9187]
synonym: "second thoracic vertebra" EXACT [FMA:9187]
synonym: "T2 vertebra" EXACT [FMA:9187]
xref: EMAPA:19543
xref: FMA:9187
xref: MA:0001439
xref: ncithesaurus:T2_Vertebra
xref: SCTID:181829006
is_a: UBERON:0002347 ! thoracic vertebra
relationship: anteriorly_connected_to UBERON:0004626 {source="FMA"} ! thoracic vertebra 1
[Term]
id: UBERON:0004628
name: thoracic vertebra 3
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "T3 vertebra" EXACT [FMA:9209]
synonym: "Third dorsal vertebra" EXACT [FMA:9209]
synonym: "third thoracic vertebra" EXACT [FMA:9209]
xref: EMAPA:19544
xref: FMA:9209
xref: MA:0001440
xref: ncithesaurus:T3_Vertebra
xref: SCTID:181830001
is_a: UBERON:0002347 ! thoracic vertebra
relationship: anteriorly_connected_to UBERON:0004627 {source="FMA"} ! thoracic vertebra 2
[Term]
id: UBERON:0004629
name: thoracic vertebra 4
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Fourth dorsal vertebra" EXACT [FMA:9248]
synonym: "fourth thoracic vertebra" EXACT [FMA:9248]
synonym: "T4 vertebra" EXACT [FMA:9248]
xref: EMAPA:19545
xref: FMA:9248
xref: MA:0001441
xref: ncithesaurus:T4_Vertebra
xref: SCTID:181831002
is_a: UBERON:0002347 ! thoracic vertebra
relationship: anteriorly_connected_to UBERON:0004628 {source="FMA"} ! thoracic vertebra 3
[Term]
id: UBERON:0004630
name: thoracic vertebra 5
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Fifth dorsal vertebra" EXACT [FMA:9922]
synonym: "fifth thoracic vertebra" EXACT [FMA:9922]
synonym: "T5 vertebra" EXACT [FMA:9922]
xref: EMAPA:19546
xref: FMA:9922
xref: MA:0001442
xref: ncithesaurus:T5_Vertebra
xref: SCTID:181832009
is_a: UBERON:0002347 ! thoracic vertebra
relationship: anteriorly_connected_to UBERON:0004629 {source="FMA"} ! thoracic vertebra 4
[Term]
id: UBERON:0004631
name: thoracic vertebra 6
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Sixth dorsal vertebra" EXACT [FMA:9945]
synonym: "sixth thoracic vertebra" EXACT [FMA:9945]
synonym: "T6 vertebra" EXACT [FMA:9945]
xref: EMAPA:19547
xref: FMA:9945
xref: MA:0001443
xref: ncithesaurus:T6_Vertebra
xref: SCTID:181834005
is_a: UBERON:0002347 ! thoracic vertebra
relationship: anteriorly_connected_to UBERON:0004630 {source="FMA"} ! thoracic vertebra 5
[Term]
id: UBERON:0004632
name: thoracic vertebra 7
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Seventh dorsal vertebra" EXACT [FMA:9968]
synonym: "seventh thoracic vertebra" EXACT [FMA:9968]
synonym: "T7 vertebra" EXACT [FMA:9968]
xref: EMAPA:19548
xref: FMA:9968
xref: MA:0001444
xref: ncithesaurus:T7_Vertebra
xref: SCTID:181835006
is_a: UBERON:0002347 ! thoracic vertebra
relationship: anteriorly_connected_to UBERON:0004631 {source="FMA"} ! thoracic vertebra 6
[Term]
id: UBERON:0004633
name: thoracic vertebra 9
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Ninth dorsal vertebra" EXACT [FMA:10014]
synonym: "ninth thoracic vertebra" EXACT [FMA:10014]
synonym: "T9 vertebra" EXACT [FMA:10014]
xref: EMAPA:19550
xref: FMA:10014
xref: MA:0001446
xref: ncithesaurus:T9_Vertebra
xref: SCTID:181837003
is_a: UBERON:0002347 ! thoracic vertebra
relationship: anteriorly_connected_to UBERON:0011050 {source="FMA"} ! thoracic vertebra 8
[Term]
id: UBERON:0004634
name: thoracic vertebra 10
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "T10 vertebra" EXACT [FMA:10037]
synonym: "Tenth dorsal vertebra" EXACT [FMA:10037]
synonym: "tenth thoracic vertebra" EXACT [FMA:10037]
xref: EMAPA:19551
xref: FMA:10037
xref: MA:0001447
xref: ncithesaurus:T10_Vertebra
xref: SCTID:181838008
is_a: UBERON:0002347 ! thoracic vertebra
relationship: anteriorly_connected_to UBERON:0004633 {source="FMA"} ! thoracic vertebra 9
[Term]
id: UBERON:0004635
name: thoracic vertebra 11
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "Eleventh dorsal vertebra" EXACT [FMA:10059]
synonym: "eleventh thoracic vertebra" EXACT [FMA:10059]
synonym: "T11 vertebra" EXACT [FMA:10059]
xref: EMAPA:19552
xref: FMA:10059
xref: MA:0001448
xref: ncithesaurus:T11_Vertebra
xref: SCTID:181839000
is_a: UBERON:0002347 ! thoracic vertebra
relationship: anteriorly_connected_to UBERON:0004634 {source="FMA"} ! thoracic vertebra 10
[Term]
id: UBERON:0004636
name: thoracic vertebra 12
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
synonym: "T12 vertebra" EXACT [FMA:10081]
synonym: "Twelfth dorsal vertebra" EXACT [FMA:10081]
synonym: "twelfth thoracic vertebra" EXACT [FMA:10081]
xref: EMAPA:19553
xref: FMA:10081
xref: MA:0001449
xref: ncithesaurus:T12_Vertebra
xref: SCTID:181840003
is_a: UBERON:0002347 ! thoracic vertebra
relationship: anteriorly_connected_to UBERON:0004635 {source="FMA"} ! thoracic vertebra 11
[Term]
id: UBERON:0004637
name: otic capsule
def: "The capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." [http://medical-dictionary.thefreedictionary.com/otic+capsule, http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500]
comment: Taxon notes: developmental relationships need to be checked
synonym: "auditory capsule" RELATED [VHOG:0000854]
synonym: "otic capsule" EXACT [ZFA:0001500]
synonym: "otic region" RELATED []
synonym: "periotic" RELATED []
synonym: "periotic capsule" RELATED [VHOG:0000854]
xref: AAO:0010143
xref: SCTID:361515007
xref: VHOG:0000854
property_value: UBPROP:0000001 "Skeletal elements surrounding the membranous labyrinth of the inner ear. Sensory capsules anterolateral to and confluent with occipital arch.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of occipito-petrosal (AAO:0010831)[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0010351 ! otic capsule cartilage condensation
relationship: part_of UBERON:0001694 {source="EHDAA2"} ! petrous part of temporal bone
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0001846 ! internal ear
relationship: part_of UBERON:0003110 ! otic region
[Term]
id: UBERON:0004638
name: blood vessel endothelium
def: "An endothelium that lines the blood vasculature. Other endothelia may line lymph vessels, the heart" [UBERON:cjm]
subset: vertebrate_core
xref: BTO:0000766
xref: MA:0000709
xref: ncithesaurus:Blood_Vessel_Endothelium
xref: TAO:0005257
xref: ZFA:0005257
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004852 ! cardiovascular system endothelium
relationship: part_of UBERON:0001981
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0004639
name: afferent arteriole
def: "The afferent arterioles are a group of blood vessels that supply the nephrons in many excretory systems. They play an important role in the regulation of blood pressure. The afferent arterioles branch from the renal artery which supplies blood to the kidneys. The afferent arterioles later diverge into the capillaries of the glomerulus. When renal blood flow is reduced, the macula densa releases prostaglandins, which cause the juxtaglomerular cells lining the afferent arterioles to release renin, activating the renin-angiotensin-aldosterone system, to increase blood pressure. [WP,unvetted]." [Wikipedia:Afferent_arterioles]
subset: vertebrate_core
synonym: "arteriola glomerularis afferens" RELATED LATIN [Wikipedia:Afferent_arterioles]
synonym: "kidney afferent arteriole" EXACT [MP:0011312]
xref: EMAPA:28230
xref: EMAPA:28266
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png
xref: MA:0002579
xref: MP:0011312
xref: SCTID:67498004
xref: TAO:0002139
xref: ZFA:0005307
is_a: UBERON:0001231 ! nephron tubule
is_a: UBERON:0001980 ! arteriole
is_a: UBERON:0003644 ! kidney arterial blood vessel
relationship: part_of UBERON:0001229 ! renal corpuscle
[Term]
id: UBERON:0004640
name: efferent arteriole
def: "The efferent arterioles are blood vessels that are part of the urinary tract of organisms. The efferent arterioles form from a convergence of the capillaries of the glomerulus. They play an important role in maintaining the glomerular filtration rate despite fluctuations in blood pressure. In the mammalian kidney they follow two markedly different courses, depending on the location of the glomeruli from which they arise. In the mammalian kidney about 15% of glomeruli lie close to the boundary between the renal cortex and renal medulla and are known as juxtamedullary glomeruli. The rest are simply undifferentiated cortical glomeruli. [WP,unvetted]." [Wikipedia:Efferent_arteriole]
subset: vertebrate_core
synonym: "arteriola glomerularis efferens capsulae renalis" RELATED LATIN [Wikipedia:Efferent_arteriole]
synonym: "kidney efferent arteriole" EXACT [MP:0011313]
xref: EMAPA:28233
xref: EMAPA:28275
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png
xref: MA:0002585
xref: SCTID:29926005
xref: TAO:0002140
xref: ZFA:0005308
is_a: UBERON:0001231 ! nephron tubule
is_a: UBERON:0001980 ! arteriole
is_a: UBERON:0003644 ! kidney arterial blood vessel
relationship: part_of UBERON:0001229 ! renal corpuscle
[Term]
id: UBERON:0004641
name: spleen capsule
def: "A capsule that is part of a spleen [Obol]." [OBOL:automatic]
synonym: "capsule of spleen" EXACT [FMA:15849]
synonym: "fibroelastic coat of spleen" EXACT [FMA:15849]
synonym: "fibrous capsule of spleen" EXACT [FMA:15849]
synonym: "Malpighian capsule" EXACT [FMA:15849]
synonym: "splenic capsule" EXACT [FMA:15849]
synonym: "tunica fibrosa (splen)(lien)" EXACT [FMA:15849]
xref: FMA:15849
xref: MA:0000753
xref: ncithesaurus:Splenic_Capsule
xref: SCTID:329635002
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003893 ! capsule
relationship: part_of UBERON:0002106
intersection_of: UBERON:0003893 ! capsule
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0004642
name: third ventricle ependyma
def: "An ependyma that is part of a third ventricle [Obol]." [OBOL:automatic]
synonym: "3rd ventricle ependyma" EXACT [MA:0000882]
synonym: "ependyma of third ventricle" EXACT [MA:0000882]
xref: FMA:242833
xref: MA:0000882
xref: SCTID:362316006
is_a: UBERON:0005357 ! brain ependyma
relationship: part_of UBERON:0002286
intersection_of: UBERON:0004670 ! ependyma
intersection_of: part_of UBERON:0002286 ! third ventricle
relationship: part_of UBERON:0002286 ! third ventricle
[Term]
id: UBERON:0004643
name: lateral ventricle ependyma
def: "An ependyma that is part of a lateral ventricle [Obol]." [OBOL:automatic]
synonym: "ependyma of lateral ventricle" EXACT [FMA:242825]
xref: FMA:242825
xref: MA:0000964
xref: ncithesaurus:Lateral_Ventricle_Ependyma
xref: SCTID:369275002
is_a: UBERON:0005357 ! brain ependyma
relationship: part_of UBERON:0002285
intersection_of: UBERON:0004670 ! ependyma
intersection_of: part_of UBERON:0002285 ! lateral ventricle
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0004644
name: fourth ventricle ependyma
def: "An ependyma that is part of a fourth ventricle [Obol]." [OBOL:automatic]
synonym: "4th ventricle ependyma" RELATED [MA:0000986]
synonym: "ependyma of fourth ventricle" EXACT [FMA:242835]
xref: FMA:242835
xref: MA:0000986
xref: ncithesaurus:Fourth_Ventricle_Ependyma
xref: SCTID:369277005
is_a: UBERON:0005357 ! brain ependyma
relationship: part_of UBERON:0002422
intersection_of: UBERON:0004670 ! ependyma
intersection_of: part_of UBERON:0002422 ! fourth ventricle
relationship: part_of UBERON:0002422 ! fourth ventricle
[Term]
id: UBERON:0004645
name: urinary bladder urothelium
synonym: "bladder transitional cell epithelium" EXACT [FMA:15936]
synonym: "transitional epithelium" RELATED [MA:0001693]
synonym: "transitional epithelium of urinary bladder" EXACT [FMA:15936]
synonym: "urinary bladder transitional epithelium" EXACT [FMA:15936]
synonym: "urothelium" BROAD [BTO:0001245]
synonym: "urothelium of urinary bladder" EXACT [FMA:15936]
xref: BTO:0001694
xref: FMA:15936
xref: MA:0001693
xref: ncithesaurus:Transitional_Epithelium
xref: SCTID:25631003
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000365 ! urothelium
is_a: UBERON:0003350 ! epithelium of mucosa
relationship: part_of UBERON:0001255
intersection_of: UBERON:0000365 ! urothelium
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001259 ! mucosa of urinary bladder
[Term]
id: UBERON:0004646
name: infraorbital artery
def: "The infraorbital artery is an artery in the head that runs in the maxilla, emerging through the infraorbital foramen, just under the orbit of the eye. [WP,unvetted]." [Wikipedia:Infraorbital_artery]
synonym: "a. infraorbitalis" RELATED LATIN [Wikipedia:Infraorbital_artery]
synonym: "infra-orbital artery" EXACT [FMA:49767]
xref: FMA:49767
xref: http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray511.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray511.png/200px-Gray511.png
xref: MA:0001977
xref: ncithesaurus:Infraorbital_Artery
xref: SCTID:148167004
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001637 ! artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: branch_of UBERON:0001616 ! maxillary artery
[Term]
id: UBERON:0004647
name: liver lobule
synonym: "hepatic lobule" EXACT [FMA:14471]
synonym: "lobulus hepaticus" EXACT [FMA:14471]
xref: FMA:14471
xref: MA:0002494
xref: ncithesaurus:Hepatic_Lobule
xref: SCTID:362194004
is_a: UBERON:0000064 {source="FMA"} ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001280 {source="FMA"} ! liver parenchyma
[Term]
id: UBERON:0004648
name: esophagus muscularis mucosa
synonym: "esophagus muscularis mucosae" EXACT []
synonym: "lamina muscularis of esophageal mucous membrane" EXACT [FMA:63059]
synonym: "muscularis mucosae of esophagus" EXACT [FMA:63059]
xref: FMA:63059
xref: MA:0002681
xref: ncithesaurus:Esophageal_Muscularis_Mucosa
xref: SCTID:47720007
is_a: UBERON:0002112 ! smooth muscle of esophagus
is_a: UBERON:0006676 ! muscularis mucosa
relationship: part_of UBERON:0001043
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0002469 ! esophagus mucosa
[Term]
id: UBERON:0004649
name: sphenoid bone pterygoid process
def: "The pterygoid processes of the sphenoid, one on either side, descend perpendicularly from the regions where the body and great wings unite. Each process consists of a medial pterygoid plate and a lateral pterygoid plate, the upper parts of which are fused anteriorly; a vertical sulcus, the pterygopalatine groove, descends on the front of the line of fusion. The plates are separated below by an angular cleft, the pterygoid fissure (or pterygoid notch), the margins of which are rough for articulation with the pyramidal process of the palatine bone. The two plates diverge behind and enclose between them a V-shaped fossa, the pterygoid fossa, which contains pterygoideus internus and tensor veli palatini. Above this fossa is a small, oval, shallow depression, the scaphoid fossa, which gives origin to the tensor veli palatini. The anterior surface of the pterygoid process is broad and triangular near its root, where it forms the posterior wall of the pterygopalatine fossa and presents the anterior orifice of the pterygoid canal." [Wikipedia:Pterygoid_processes_of_the_sphenoid]
comment: todo - check AAO:0000521-pterygoid and MA:0001471-pterygoid bone. MA also has 'inner plate of pterygoid process' as a syn for MA:0001471, FMA has lateral/medial plates. Seems likely inner = lateral (see MP:0004452).
synonym: "processus pterygoideus" EXACT [FMA:54682]
synonym: "processus pterygoideus ossis sphenoidalis" EXACT [FMA:54682, FMA:TA]
synonym: "processus pterygoideus ossis sphenoidalis" RELATED LATIN [Wikipedia:Pterygoid_processes_of_the_sphenoid]
synonym: "pterygoid plate" RELATED [Wikipedia:Pterygoid_processes_of_the_sphenoid]
synonym: "pterygoid process" EXACT [FMA:54682]
synonym: "pterygoid process" RELATED [Wikipedia:Pterygoid_processes_of_the_sphenoid]
synonym: "pterygoid process of sphenoid" EXACT [FMA:54682]
synonym: "pterygoid process of sphenoid bone" EXACT [FMA:54682]
synonym: "pterygoid process of sphenoid bone" RELATED [MA:0002774]
synonym: "pterygoid processes" RELATED [Wikipedia:Pterygoid_processes_of_the_sphenoid]
synonym: "pterygoid processus" RELATED [Wikipedia:Pterygoid_processes_of_the_sphenoid]
xref: AAO:0010086
xref: FMA:54682
xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png
xref: MA:0002774
xref: SCTID:140390001
property_value: UBPROP:0000001 "Process that projects from posterior margin of commissure into subocular space.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of anterior quadratocranial commissure (AAO:0010061)[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001677 ! sphenoid bone
[Term]
id: UBERON:0004650
name: tongue keratinized epithelium
synonym: "keratinized epithelium of tongue" EXACT [FMA:74865]
xref: FMA:74865
xref: MA:0002787
is_a: UBERON:0006919 ! tongue squamous epithelium
[Term]
id: UBERON:0004651
name: scapula spine
def: "a prominent plate of bone, which crosses obliquely the medial four-fifths of the scapula at its upper part, and separates the supra- from the infraspinatous fossa." [Wikipedia:Spine_of_scapula]
comment: Taxon notes: the cleithrum, the major shoulder bone of extinct land vertebrate ancestors,.. appears to survive as the scapular spine in living mammals[Matsuoka, PMC1352163]
synonym: "scapular spine" RELATED [FMA:13453, MA:0002806]
synonym: "spina scapulae" RELATED LATIN [Wikipedia:Spine_of_scapula]
synonym: "spine of scapula" EXACT [FMA:13453]
xref: EMAPA:25123
xref: FMA:13453
xref: http://upload.wikimedia.org/wikipedia/commons/a/a6/Gray205_left_scapula_lateral_view.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Gray205_left_scapula_lateral_view.png/200px-Gray205_left_scapula_lateral_view.png
xref: MA:0002806
xref: SCTID:181916005
property_value: "homologous_to" UBERON:0004741
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0001124 {source="FMA"} ! pectoral limb scapula
[Term]
id: UBERON:0004652
name: humerus diaphysis
synonym: "body of humerus" EXACT [FMA:13305]
synonym: "corpus humeri" EXACT [FMA:13305, FMA:TA]
synonym: "diaphysis of humerus" EXACT [FMA:13305]
synonym: "humeral diaphysis" EXACT [FMA:13305]
synonym: "shaft of humerus" EXACT [FMA:13305]
xref: EMAPA:25051
xref: FMA:13305
xref: MA:0002807
xref: SCTID:181927007
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004769 ! diaphysis
relationship: part_of UBERON:0000976
intersection_of: UBERON:0004769 ! diaphysis
intersection_of: part_of UBERON:0000976 ! humerus
relationship: part_of UBERON:0000976 ! humerus
[Term]
id: UBERON:0004654
name: temporal process of zygomatic bone
def: "The temporal process of the zygomatic bone, directed backward and medialward, is concave, presenting medially a rough, triangular area, for articulation with the maxilla, and laterally a smooth, concave surface, the upper part of which forms the anterior boundary of the temporal fossa, the lower a part of the infratemporal fossa. Near the center of this surface is the zygomaticotemporal foramen for the transmission of the zygomaticotemporal nerve." [Wikipedia:Temporal_process_of_the_zygomatic_bone]
synonym: "facies temporalis ossis zygomatici" RELATED LATIN [Wikipedia:Temporal_process_of_the_zygomatic_bone]
synonym: "processus temporalis (os zygomaticum)" EXACT [FMA:52904]
synonym: "zygomatic bone temporal process" EXACT [MA:0002812]
xref: EMAPA:19015
xref: FMA:52904
xref: http://upload.wikimedia.org/wikipedia/commons/d/da/Gray166.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray166.png/200px-Gray166.png
xref: MA:0002812
xref: SCTID:122772003
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001683 ! zygomatic bone
relationship: part_of UBERON:0002500 ! zygomatic arch
[Term]
id: UBERON:0004655
name: zygomatic process of temporal bone
alt_id: UBERON:0004653
def: "The zygomatic process of the temporal bone is a long, arched process projecting from the lower part of the squamous portion of the temporal bone. It articulates with the zygomatic bone. This process is at first directed lateralward, its two surfaces looking upward and downward; it then appears as if twisted inward upon itself, and runs forward, its surfaces now looking medialward and lateralward." [Wikipedia:Zygomatic_process_of_temporal_bone]
synonym: "processus zygomaticus" EXACT [FMA:52886]
synonym: "processus zygomaticus ossis temporalis" RELATED LATIN [Wikipedia:Zygomatic_process_of_temporal_bone]
synonym: "temporal bone zygomatic process" EXACT [MA:0002811]
synonym: "temporal zygomatic process" EXACT [FMA:52886]
xref: EMAPA:19015
xref: FMA:52886
xref: http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray137.png/200px-Gray137.png
xref: MA:0002811
xref: SCTID:414110008
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
relationship: part_of UBERON:0001678 ! temporal bone
relationship: part_of UBERON:0002500 ! zygomatic arch
[Term]
id: UBERON:0004657
name: mandible condylar process
def: "The posterior process on the ramus of the mandible composed of two parts: a superior part, the articular portion, and an inferior part, the condylar neck." [BTO:0001750, Wikipedia:Condyloid_process]
synonym: "condylar process of mandible" EXACT [FMA:52836]
synonym: "condyle of mandible" RELATED [Wikipedia:Condyloid_process]
synonym: "condyle of the mandible" RELATED [Wikipedia:Condyloid_process]
synonym: "condyloid process" RELATED [Wikipedia:Condyloid_process]
synonym: "mandibular condyle" EXACT [BTO:0001750]
synonym: "mandibular condyloid process" RELATED [MA:0002816]
synonym: "processus condylaris" EXACT [FMA:52836]
xref: BTO:0001750
xref: FMA:52836
xref: GAID:219
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Processuscondylarismandibulae.PNG/200px-Processuscondylarismandibulae.PNG
xref: MA:0002816
xref: MESH:A.02.835.232.781.324.502.632.600
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000401 ! mandibular ramus
relationship: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0004658
name: mandible head
synonym: "head of mandible" EXACT [FMA:59331]
synonym: "Mandibular head" EXACT [FMA:59331]
xref: FMA:59331
xref: MA:0002817
xref: SCTID:51354009
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0004657 ! mandible condylar process
[Term]
id: UBERON:0004659
name: mandible neck
synonym: "Mandibular neck" EXACT [FMA:59332]
synonym: "neck of mandible" EXACT [FMA:59332]
xref: FMA:59332
xref: MA:0002818
xref: SCTID:368875004
is_a: UBERON:0001560 ! neck of organ
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001684 ! mandible
relationship: part_of UBERON:0004657 ! mandible condylar process
[Term]
id: UBERON:0004660
name: mandible coronoid process
def: "a dorsal process on the lower jaw associated with muscle attachment. It may be formed by a separate coronoid bone or as a process of the dentary. In most living (and many extinct) mammals, the most dorsal of the three proximal processes of the jaw." [http://palaeos.com/vertebrates/glossary/glossaryCh.html#Coronoid%20process, Wikipedia:Coronoid_process_of_the_mandible]
comment: AO notes: TAO:0001673 coronoid process, a bony projection on dentary
synonym: "coronoid" BROAD [AAO:0000103]
synonym: "coronoid process of mandible" EXACT [FMA:52833]
synonym: "mandibular coronoid process" RELATED [MA:0002819]
synonym: "processus coronoideus (mandibula)" EXACT [FMA:52833]
synonym: "processus coronoideus mandibulae" RELATED LATIN [Wikipedia:Coronoid_process_of_the_mandible]
xref: FMA:52833
xref: http://upload.wikimedia.org/wikipedia/commons/7/74/Processuscoronoideusmandibulae.PNG
xref: MA:0002819
xref: SCTID:244691004
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000401 ! mandibular ramus
relationship: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0004661
name: mandible temporal crest
synonym: "Crista temporalis (Mandibulae)" EXACT [FMA:59484]
synonym: "temporal crest of mandible" EXACT [FMA:59484]
xref: FMA:59484
xref: MA:0002820
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
disjoint_from: UBERON:0010994 ! coronoid process of ulna
relationship: part_of UBERON:0000401 ! mandibular ramus
relationship: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0004662
name: vertebra lamina
synonym: "lamina arcus vertebrae" EXACT [FMA:11951, FMA:TA]
synonym: "lamina of vertebra" EXACT [FMA:11951]
synonym: "lamina of vertebral arch" EXACT [FMA:11951]
synonym: "neural arch lamina" EXACT [AAO:0000695]
synonym: "vertebral lamina" EXACT [FMA:11951]
synonym: "vertebral lamina" RELATED [MA:0002876]
xref: AAO:0000695
xref: FMA:11951
xref: MA:0002876
xref: SCTID:277423002
property_value: UBPROP:0000001 "Paired plates that form the neural arch. The lateral margin of each lamina rests dorsal to the superior end of the pedicel, and the medial end fuses to the medial end of the opposite lamina.[AAO]" xsd:string
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0002412 ! vertebra
relationship: part_of UBERON:0003861 ! neural arch
[Term]
id: UBERON:0004663
name: aorta wall
def: "An anatomical wall that is part of an aorta [Obol]." [OBOL:automatic]
synonym: "Aortic wall" EXACT [FMA:14156]
synonym: "wall of aorta" EXACT [FMA:14156]
xref: FMA:14156
xref: MA:0002901
is_a: UBERON:0000415 ! artery wall
relationship: part_of UBERON:0000947
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0004664
name: aorta tunica adventitia
synonym: "tunica adventitia of aorta" EXACT [FMA:14283]
xref: FMA:14283
xref: MA:0002902
xref: SCTID:24996002
is_a: UBERON:0007240 ! tunica adventitia of artery
relationship: part_of UBERON:0000947
intersection_of: UBERON:0005734 ! tunica adventitia
intersection_of: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0004663 ! aorta wall
[Term]
id: UBERON:0004665
name: seminal vesicle muscle layer
def: "A portion of muscle tissue that is part of a seminal vesicle [Obol]." [OBOL:automatic]
synonym: "muscle layer of seminal vesicle" EXACT [FMA:19404]
synonym: "muscular coat of seminal gland" EXACT [FMA:19404]
synonym: "muscular layer of seminal gland" EXACT [FMA:19404]
synonym: "tunica muscularis (Vesicula seminalis)" EXACT [FMA:19404]
synonym: "tunica muscularis glandulae vesiculosae" EXACT [FMA:19404, FMA:TA]
xref: EMAPA:29773
xref: FMA:19404
xref: MA:0002913
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0000998
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0000998 ! seminal vesicle
relationship: part_of UBERON:0000998 ! seminal vesicle
[Term]
id: UBERON:0004666
name: interventricular septum membranous part
synonym: "Membranous interventricular septum" EXACT [FMA:7135]
synonym: "membranous interventricular septum" RELATED [MA:0002939]
synonym: "membranous part of interventricular septum" EXACT [FMA:7135]
synonym: "Membranous portion of interventricular septum" EXACT [FMA:7135]
synonym: "Pars membranacea (septi interventricularis)" EXACT [FMA:7135]
xref: EHDAA2:0004596
xref: EMAPA:18246
xref: FMA:7135
xref: MA:0002939
xref: SCTID:278228007
xref: VHOG:0000927
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0004667
name: interventricular septum muscular part
def: "A portion of muscle tissue that is part of a interventricular septum [Obol]." [OBOL:automatic]
synonym: "Muscular interventricular septum" EXACT [FMA:7134]
synonym: "muscular interventricular septum" RELATED [MA:0002940]
synonym: "muscular part of interventricular septum" EXACT [FMA:7134]
synonym: "Pars muscularis (septi interventricularis)" EXACT [FMA:7134]
xref: EHDAA:2607
xref: EMAPA:18247
xref: FMA:7134
xref: MA:0002940
xref: RETIRED_EHDAA2:0000888
is_a: UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0002094
intersection_of: UBERON:0002385 ! muscle tissue
intersection_of: part_of UBERON:0002094 ! interventricular septum
relationship: part_of UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0004668
name: fourth ventricle aperture
def: "An orifice that is part of a fourth ventricle [Obol]." [OBOL:automatic]
synonym: "aperture of fourth ventricle" EXACT [FMA:242766]
xref: FMA:242766
xref: MA:0002945
is_a: UBERON:0000161 ! orifice
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002422
intersection_of: UBERON:0000161 ! orifice
intersection_of: part_of UBERON:0002422 ! fourth ventricle
relationship: part_of UBERON:0002422 ! fourth ventricle
[Term]
id: UBERON:0004670
name: ependyma
def: "the thin epithelial membrane lining the ventricular system of the brain and the spinal cord. Ependyma is one of the four types of neuroglia in the central nervous system. It is involved in the production of cerebrospinal fluid (CSF). It is simple, columnar or cuboidal." [BTO:0000401, Wikipedia:Ependyma]
comment: FMA has ependyma proper and ependyma, not defined
synonym: "ependyma of neuraxis" EXACT [FMA:242791]
synonym: "ependymal epithelium" EXACT [BTO:0000401]
synonym: "lamina epithelialis" RELATED [FMA:242791]
xref: BTO:0000401
xref: FMA:242791
xref: GAID:608
xref: http://upload.wikimedia.org/wikipedia/commons/b/b6/Gray667.png
xref: MESH:A.08.186.211.276.460
xref: ncithesaurus:Ependyma
xref: SCTID:12766003
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0005358
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0005358 ! ventricle of nervous system
relationship: part_of UBERON:0005358 ! ventricle of nervous system
[Term]
id: UBERON:0004671
name: gyrus rectus
synonym: "gyrus rectus" EXACT [NIF_GrossAnatomy:birnlex_1103]
synonym: "medial part of gyri orbitales" EXACT [FMA:61893]
synonym: "rectal gyrus" EXACT [FMA:61893]
synonym: "rectus gyrus" EXACT [FMA:61893]
synonym: "straight gyrus" EXACT [FMA:61893]
xref: FMA:61893
xref: NIF_GrossAnatomy:birnlex_1103
xref: SCTID:279206004
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
relationship: part_of UBERON:0001870 ! frontal cortex
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0004672
name: posterior horn lateral ventricle
synonym: "cornu posterius ventriculi lateralis" EXACT [FMA:83700, FMA:TA]
synonym: "occipital horn" EXACT [NIF_GrossAnatomy:birnlex_1297]
synonym: "occipital horn of lateral ventricle" EXACT [FMA:83700]
synonym: "posterior horn lateral ventricle" EXACT [NIF_GrossAnatomy:birnlex_1297]
synonym: "posterior horn of lateral ventricle" EXACT [FMA:83700]
synonym: "posterior horn of the lateral ventricle" EXACT [NIF_GrossAnatomy:birnlex_1297]
xref: FMA:83700
xref: ncithesaurus:Occipital_Horn_of_the_Lateral_Ventricle
xref: NIF_GrossAnatomy:birnlex_1297
xref: SCTID:362314009
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0004673
name: trigeminal nerve root
comment: TODO - check ZFA
synonym: "root of trigeminal nerve" EXACT [FMA:52610]
synonym: "root of trigeminal V nerve" EXACT [Obol:cjm]
synonym: "trigeminal nerve root" EXACT [NIF_GrossAnatomy:birnlex_1346]
synonym: "trigeminal neural root" EXACT [FMA:52610]
xref: FMA:52610
xref: NIF_GrossAnatomy:birnlex_1346
xref: SCTID:280185007
xref: TAO:0000192
xref: ZFA:0000192
is_a: UBERON:0004733 ! segmental subdivision of hindbrain
is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: continuous_with UBERON:0001645
intersection_of: UBERON:0002211 ! nerve root
intersection_of: continuous_with UBERON:0001645 ! trigeminal nerve
relationship: continuous_with UBERON:0001645 ! trigeminal nerve
relationship: part_of UBERON:0001895 ! metencephalon
[Term]
id: UBERON:0004674
name: facial nerve root
synonym: "central part of facial nerve" EXACT [FMA:53418]
synonym: "facial nerve fibers" EXACT [FMA:53418]
synonym: "facial nerve root" EXACT [NIF_GrossAnatomy:birnlex_1513]
synonym: "facial neural root" EXACT [FMA:53418]
synonym: "root of facial nerve" EXACT [FMA:53418]
xref: FMA:53418
xref: NIF_GrossAnatomy:birnlex_1513
xref: SCTID:280186008
is_a: UBERON:0004733 ! segmental subdivision of hindbrain
is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: continuous_with UBERON:0001647
intersection_of: UBERON:0002211 ! nerve root
intersection_of: continuous_with UBERON:0001647 ! facial nerve
relationship: continuous_with UBERON:0001647 ! facial nerve
relationship: part_of UBERON:0001895 ! metencephalon
[Term]
id: UBERON:0004675
name: hypoglossal nerve root
synonym: "central part of hypoglossal nerve" EXACT [FMA:72632]
synonym: "hypoglossal nerve fibers" EXACT [FMA:72632]
synonym: "hypoglossal nerve root" EXACT [NIF_GrossAnatomy:birnlex_1588]
synonym: "hypoglossal nerve tract" EXACT [FMA:72632]
synonym: "root of hypoglossal nerve" EXACT [FMA:72632]
xref: FMA:72632
xref: NIF_GrossAnatomy:birnlex_1588
is_a: UBERON:0004733 ! segmental subdivision of hindbrain
is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: continuous_with UBERON:0001650
intersection_of: UBERON:0002211 ! nerve root
intersection_of: continuous_with UBERON:0001650 ! hypoglossal nerve
relationship: continuous_with UBERON:0001650 ! hypoglossal nerve
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0004676
name: spinal cord lateral horn
def: "a triangular field that is a lateralward projection of the postero-lateral part of the anterior column[WP, modified by cjm]." [Wikipedia:Lateral_horn_of_spinal_cord]
comment: todo - check relationship to spinal cord lateral column. in FMA funiculus=white and horn=grep
synonym: "cornu laterale medullae spinalis" RELATED LATIN [Wikipedia:Lateral_horn_of_spinal_cord]
synonym: "intermediate gray column of spinal cord" EXACT [FMA:256536]
synonym: "intermediate grey column of spinal cord" EXACT [FMA:256536]
synonym: "lateral gray column of spinal cord" EXACT [FMA:256536]
synonym: "lateral gray horn" EXACT [NIF_GrossAnatomy:birnlex_2666]
synonym: "lateral gray matter of spinal cord" EXACT [FMA:256536]
synonym: "lateral horn of spinal cord" EXACT [FMA:256536]
synonym: "spinal cord intermediate horn" EXACT [NIF_GrossAnatomy:birnlex_2666]
synonym: "spinal cord lateral horn" EXACT [NIF_GrossAnatomy:birnlex_2666]
xref: FMA:256536
xref: http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray675.png
xref: ncithesaurus:Lateral_Horn_of_the_Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_2666
is_a: UBERON:0002315 {source="FMA"} ! gray matter of spinal cord
[Term]
id: UBERON:0004677
name: spinal cord gray commissure
def: "The gray commissure is a thin strip of gray matter that surrounds the central canal of the spinal cord and, along with the anterior white commissure, connects the two halves of the cord. It comprises lamina X in the Rexed classification." [Wikipedia:Gray_commissure]
synonym: "commissura grisea anaterior medullae spinalis, commissura grisea posterior medullae spinalis" RELATED LATIN [Wikipedia:Gray_commissure]
synonym: "gray commissure of spinal cord" EXACT [FMA:77036]
synonym: "spinal cord gray commissure" EXACT [NIF_GrossAnatomy:birnlex_2669]
synonym: "spinal cord grey commissure" EXACT [Obol:automatic]
xref: FMA:77036
xref: http://upload.wikimedia.org/wikipedia/commons/c/c0/Medulla_spinalis_-_Substantia_grisea_-_English.svg
xref: NIF_GrossAnatomy:birnlex_2669
is_a: UBERON:0002315 {source="FMA"} ! gray matter of spinal cord
is_a: UBERON:0008882 ! spinal cord commissure
[Term]
id: UBERON:0004678
name: apex of spinal cord dorsal horn
synonym: "apex cornu posterioris medullae spinalis" EXACT [FMA:256700, FMA:TA]
synonym: "apex of dorsal gray column" EXACT [FMA:256700]
synonym: "apex of dorsal gray column of spinal cord" EXACT [FMA:256700]
synonym: "apex of dorsal horn of spinal cord" EXACT [FMA:256700]
synonym: "apex of posterior horn of spinal cord" EXACT [FMA:256700]
synonym: "apex of spinal cord dorsal horn" EXACT [NIF_GrossAnatomy:birnlex_2670]
synonym: "apex of spinal cord posterior horn" EXACT [NIF_GrossAnatomy:birnlex_2670]
xref: FMA:256700
xref: NIF_GrossAnatomy:birnlex_2670
is_a: UBERON:0002315 ! gray matter of spinal cord
[Term]
id: UBERON:0004679
name: dentate gyrus molecular layer
synonym: "dentate gyrus molecular layer" EXACT [NIF_GrossAnatomy:birnlex_4127]
synonym: "molecular layer of dentate gyrus" EXACT [FMA:83677]
xref: FMA:83677
xref: NIF_GrossAnatomy:birnlex_4127
is_a: UBERON:0002304 ! layer of dentate gyrus
relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation
[Term]
id: UBERON:0004680
name: body of fornix
def: "The columns (anterior pillars; fornicolumns) of the fornix arch downward in front of the interventricular foramen and behind the anterior commissure, and each descends through the gray substance in the lateral wall of the third ventricle to the base of the brain, where it ends in the corpus mammillare. [WP,unvetted]." [Wikipedia:Columns_of_fornix]
synonym: "body of fornix" EXACT [NIF_GrossAnatomy:birnlex_739]
synonym: "body of fornix of forebrain" EXACT [FMA:61968]
synonym: "column of fornix" EXACT [FMA:61968]
synonym: "columna fornicis" EXACT [FMA:61968, FMA:TA]
synonym: "columna fornicis" RELATED LATIN [Wikipedia:Columns_of_fornix]
synonym: "fornix body" EXACT [FMA:61968]
xref: FMA:61968
xref: http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png
xref: NIF_GrossAnatomy:birnlex_739
is_a: UBERON:0002780 ! regional part of forebrain
is_a: UBERON:0003544 ! brain white matter
[Term]
id: UBERON:0004681
name: vestibular system
def: "The vestibular system, which contributes to our balance and our sense of spatial orientation, is the sensory system that provides the dominant input about movement and equilibrioception. Together with the cochlea, a part of the auditory system, it constitutes the labyrinth of the inner ear, situated in the vestibulum in the inner ear. As our movements consist of rotations and translations, the vestibular system comprises two components: the semicircular canal system, which indicate rotational movements; and the otoliths, which indicate linear accelerations. The vestibular system sends signals primarily to the neural structures that control our eye movements, and to the muscles that keep us upright. The projections to the former provide the anatomical basis of the vestibulo-ocular reflex, which is required for clear vision; and the projections to the muscles that control our posture are necessary to keep us upright." [Wikipedia:Vestibular_system]
comment: note that FMA and NIF have no part information for this class. This is a GAT in FMA
synonym: "vestibular organ system" EXACT [FMA:7193]
synonym: "vestibular system" EXACT [NIF_GrossAnatomy:nlx_anat_090819]
xref: BTO:0003381
xref: FMA:7193
xref: NIF_GrossAnatomy:nlx_anat_090819
xref: SCTID:361533001
is_a: UBERON:0001032 ! sensory system
[Term]
id: UBERON:0004682
name: corona radiata
def: "For the structure in embryology, see Corona radiata (embryology) In neuroanatomy, the corona radiata is a white matter sheet that continues caudally as the internal capsule and rostrally as the centrum semiovale. This sheet of axons contains both descending and ascending axons that carry nearly all of the neural traffic from and to the cerebral cortex. The corona radiata is associated with the corticospinal tract, the corticopontine tract, and the corticobulbar tract. [WP,unvetted]." [Wikipedia:Corona_radiata]
synonym: "corona radiata" EXACT [NIF_GrossAnatomy:nlx_anat_090903]
xref: FMA:18661
xref: http://upload.wikimedia.org/wikipedia/commons/2/26/Gray745.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Gray745.png/200px-Gray745.png
xref: NIF_GrossAnatomy:nlx_anat_090903
is_a: UBERON:0002791 ! regional part of telencephalon
is_a: UBERON:0011299 ! white matter of telencephalon
[Term]
id: UBERON:0004683
name: parasubiculum
synonym: "parasubicular area" EXACT [NIF_GrossAnatomy:nlx_anat_091002]
synonym: "parasubiculum" EXACT [NIF_GrossAnatomy:nlx_anat_091002]
xref: ABA:PAR
xref: BM:Tel-Cx-PASB
xref: FMA:77604
xref: NIF_GrossAnatomy:nlx_anat_091002
property_value: "spatially_disjoint_from" UBERON:0001953
property_value: "spatially_disjoint_from" UBERON:0002191
property_value: "spatially_disjoint_from" UBERON:0002728
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0004684
name: raphe nuclei
def: "Thin plates of cells in and immediately adjacent to the sagittal plane[NIF]. A moderate-size cluster of nuclei found in the brain stem. Their main function is to release serotonin to the rest of the brain. Selective serotonin reuptake inhibitor (SSRI) antidepressants are believed to act in these nuclei, as well as at their targets. The raphe nuclei are traditionally considered to be the medial portion of the reticular formation, and they appear as a ridge of cells in the center and most medial portion of the brain stem." [https://sourceforge.net/tracker/?func=detail&aid=3248146&group_id=36855&atid=440764, NIF_GrossAnatomy:nlx_anat_20090205, Wikipedia:Raphe_nuclei]
comment: we treat NR obscurus, NR magnus etc as parts of the raphe nuclei. This is consistent with treatment in FMA, where the class is 'set of raphe nuclei'
subset: vertebrate_core
synonym: "nuclei raphes" EXACT [FMA:84017, FMA:TA]
synonym: "nuclei raphes" RELATED LATIN [Wikipedia:Raphe_nuclei]
synonym: "raphe cluster" RELATED [Wikipedia:Raphe_nuclei]
synonym: "raphe nuclei" EXACT [NIF_GrossAnatomy:nlx_anat_20090205]
synonym: "raphe nuclei" EXACT [FMA:84017]
synonym: "raphe nuclei set" EXACT [FMA:84017]
synonym: "raphe nucleus" RELATED [ZFA:0001429]
xref: FMA:84017
xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Gray694.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png
xref: MESH:A.08.186.211.132.659.632
xref: ncithesaurus:Raphe_Nuclei
xref: NIF_GrossAnatomy:nlx_anat_20090205
xref: TAO:0001429
xref: ZFA:0001429
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0002275 {source="GO", source="Wikipedia"} ! reticular formation
[Term]
id: UBERON:0004685
name: middle temporal area
def: "Brodmann area 21, or BA21, is part of the temporal cortex in the human brain. The region encompasses most of the lateral temporal cortex, a region believed to play a part in auditory processing and language. Language function is left lateralized in most individuals. BA21 is superior to BA20 and inferior to BA40 and BA41. This area is also known as middle temporal area 21. It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the middle temporal gyrus. It is bounded rostrally by the temporopolar area 38 (H), ventrally by the inferior temporal area 20, caudally by the occipitotemporal area 37 (H), and dorsally by the superior temporal area 22 (Brodmann-1909). [WP,unvetted]." [Wikipedia:Brodmann_area_21]
synonym: "area 21 of Brodmann" EXACT [FMA:68618]
synonym: "Brodmann area 21" EXACT []
synonym: "middle temporal area" EXACT [NIF_GrossAnatomy:nlx_anat_20090308]
synonym: "middle temporal area" EXACT [FMA:68618]
xref: FMA:68618
xref: http://upload.wikimedia.org/wikipedia/commons/e/e8/Brodmann_area_21.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Brodmann_area_21.png/200px-Brodmann_area_21.png
xref: NIF_GrossAnatomy:nlx_anat_20090308
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0004686
name: gastro-splenic ligament
def: "peritoneum connecting the greater curvature of stomach with the hilum of the spleen[umich]. part of the greater omentum; derived from the dorsal mesogastrium in the embryo." [http://anatomy.med.umich.edu/gastrointestinal_system/stomach_tables.html, Wikipedia:Gastrosplenic_ligament]
comment: in MA, EMAPA and EHDAA2 this is part of the dorsal mesogastrium. In wikipedia, and the above source, it is derived from the DM. This is a generic ligament in MA, we infer this and assert that this is a nonskeletal ligament
synonym: "gastrolienal ligament" EXACT [FMA:16517]
synonym: "gastrosplenc ligament" EXACT [FMA:16517]
synonym: "gastrosplenic ligament" EXACT [FMA:16517]
synonym: "ligamentum gastrosplenicum" EXACT [Wikipedia:Gastrosplenic_ligament]
xref: EHDAA2:0000702
xref: EHDAA:9160
xref: EMAPA:18285
xref: EMAPA:18905
xref: FMA:16517
xref: http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1039.png
xref: MA:0001619
xref: SCTID:260636005
xref: VHOG:0000354
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003567 ! abdomen connective tissue
is_a: UBERON:0008845 {source="MA-propagated"} ! nonskeletal ligament
relationship: develops_from UBERON:0005602 {source="MA-modified", source="Wikipedia"} ! dorsal mesogastrium
relationship: part_of UBERON:0005448 {source="FMA", source="Wikipedia"} ! greater omentum
[Term]
id: UBERON:0004687
name: lieno-renal ligament
def: "peritoneum that attaches the spleen to the posterior abdominal wall over the left kidney. develops from the dorsal mesogastrium of the embryo[umich]" [http://anatomy.med.umich.edu/gastrointestinal_system/peritoneum_tables.html, Wikipedia:Splenorenal_ligament]
comment: Multiple sources support greater omentum assignment. E.g. http://medical-dictionary.thefreedictionary.com/splenorenal+ligament. We change the MA part_of assignment to develops_from
synonym: "lienorenal ligament" EXACT [FMA:16522]
synonym: "ligamentum lienorenale" EXACT [FMA:16522, FMA:TA]
synonym: "ligamentum splenorenale (lienorenale, phrenicosplenicum)" EXACT [FMA:16522]
synonym: "phrenicolienal ligament" EXACT [FMA:16522]
synonym: "splenicorenal ligament" EXACT [FMA:16522]
synonym: "splenorenal ligament" EXACT [FMA:16522]
xref: EHDAA2:0004572
xref: EMAPA:18286
xref: EMAPA:18906
xref: FMA:16522
xref: MA:0001620
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003567 ! abdomen connective tissue
is_a: UBERON:0008845 {source="MA-propagated"} ! nonskeletal ligament
relationship: develops_from UBERON:0005602 {source="MA-modified"} ! dorsal mesogastrium
relationship: part_of UBERON:0005448 {source="FMA"} ! greater omentum
[Term]
id: UBERON:0004688
name: costo-cervical trunk
def: "The costocervical trunk arises from the upper and back part of the subclavian artery, behind the scalenus anterior on the right side, and medial to that muscle on the left side. Passing backward, it splits into the deep cervical artery and the supreme intercostal artery (or the Highest intercostal artery), which descends behind the pleura in front of the necks of the first and second ribs, and anastomoses with the first aortic intercostal (3rd posterior intercostal artery). As it crosses the neck of the first rib it lies medial to the anterior division of the first thoracic nerve, and lateral to the first thoracic ganglion of the sympathetic trunk. In the first intercostal space, it gives off a branch which is distributed in a manner similar to the distribution of the aortic intercostals. The branch for the second intercostal space usually joins with one from the highest aortic intercostal artery. This branch is not constant, but is more commonly found on the right side; when absent, its place is supplied by an intercostal branch from the aorta. Each intercostal gives off a posterior branch which goes to the posterior vertebral muscles, and sends a small spinal branch through the corresponding intervertebral foramen to the medulla spinalis and its membranes. [WP,unvetted]." [Wikipedia:Costocervical_trunk]
synonym: "costocervical trunk" EXACT [FMA:10636]
synonym: "truncus costocervicalis" RELATED LATIN [Wikipedia:Costocervical_trunk]
synonym: "trunk of costocervical artery" EXACT [FMA:10636]
xref: FMA:10636
xref: http://upload.wikimedia.org/wikipedia/commons/b/b3/Costocervical_trunk_with_branches.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Costocervical_trunk_with_branches.png/200px-Costocervical_trunk_with_branches.png
xref: MA:0001939
xref: SCTID:244225009
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0004689
name: naso-frontal vein
synonym: "nasofrontal vein" EXACT [FMA:51729]
xref: FMA:51729
xref: MA:0002182
xref: SCTID:44840002
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus
relationship: tributary_of UBERON:0005486 {source="FMA/obol"} ! venous dural sinus
[Term]
id: UBERON:0004690
name: pancreaticoduodenal vein
synonym: "pancreatico-duodenal vein" EXACT [MA:0002190]
synonym: "pancreaticoduodenal vein" EXACT [FMA:15398]
synonym: "Superior posterior pancreaticoduodenal vein" EXACT [FMA:15398]
synonym: "vena pancreaticoduodenalis" EXACT []
synonym: "vena pancreaticoduodenalis superior posterior" EXACT [FMA:15398, FMA:TA]
xref: FMA:15398
xref: MA:0002190
xref: ncithesaurus:Pancreatico-Duodenal_Vein
xref: SCTID:76262002
is_a: UBERON:0001214 ! pancreatic tributary of splenic vein
relationship: tributary_of UBERON:0001138 {source="FMA/obol"} ! superior mesenteric vein
[Term]
id: UBERON:0004691
name: bulbourethral gland secretion
def: "A clear, viscous secretion that helps to lubricate the urethra for spermatozoa to pass through, neutralizing traces of acidic urine in the urethra,[2] and helps flush out any residual urine or foreign matter. It is possible for this fluid to pick up sperm, remaining in the urethral bulb from previous ejaculations, and carry them out prior to the next ejaculation[WP]." [Wikipedia:Bulbourethral_gland#Function]
synonym: "bulbo-urethral gland secretion" EXACT [FMA:62968]
synonym: "pre-ejaculate" EXACT [Wikipedia:Pre-ejaculate]
synonym: "secretion of bulbo-urethral gland" EXACT [FMA:62968]
xref: FMA:62968
xref: MA:0002524
xref: ncithesaurus:Bulbourethral_Gland_Secretion
is_a: UBERON:0006530 {source="FMA"} ! seminal fluid
relationship: secreted_by UBERON:0002366
intersection_of: UBERON:0000456 ! bodily secretion
intersection_of: secreted_by UBERON:0002366 ! bulbo-urethral gland
relationship: secreted_by UBERON:0002366 ! bulbo-urethral gland
[Term]
id: UBERON:0004692
name: external naris epithelium
def: "An epithelium that is part of a naris [Obol]." [OBOL:automatic]
xref: EMAPA:18596
xref: MA:0001321
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0005928
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0005928 ! external naris
relationship: part_of UBERON:0005928 ! external naris
[Term]
id: UBERON:0004693
name: peyer's patch epithelium
def: "An epithelium that is part of a Peyer ' s patch [Obol]." [OBOL:automatic]
xref: MA:0000731
is_a: UBERON:0001277 ! intestinal epithelium
relationship: part_of UBERON:0001211
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001211 ! Peyer's patch
relationship: part_of UBERON:0001211 ! Peyer's patch
[Term]
id: UBERON:0004694
name: harderian gland epithelium
def: "An epithelium that is part of a Harderian gland [Obol]." [OBOL:automatic]
xref: MA:0001248
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0004187
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0004187 ! Harderian gland
relationship: part_of UBERON:0004187 ! Harderian gland
[Term]
id: UBERON:0004695
name: arterial system smooth muscle
def: "A portion of smooth muscle tissue that is part of an arterial system [Obol]." [OBOL:automatic]
xref: MA:0000704
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0004572
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0004572 ! arterial system
relationship: part_of UBERON:0004572 ! arterial system
[Term]
id: UBERON:0004696
name: venous system smooth muscle
def: "A portion of smooth muscle tissue that is part of a venous system [Obol]." [OBOL:automatic]
xref: MA:0000715
is_a: UBERON:0004237 ! blood vessel smooth muscle
relationship: part_of UBERON:0004582
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0004582 ! venous system
relationship: part_of UBERON:0004237 ! blood vessel smooth muscle
relationship: part_of UBERON:0004582 ! venous system
[Term]
id: UBERON:0004697
name: Peyer's patch germinal center
def: "area of the Peyer's patch where B cells proliferate and differentiate into plasma cells" [MP:0002391]
xref: MA:0000734
xref: ncithesaurus:Peyer_s_Patch_Germinal_Center
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010754 ! germinal center
relationship: part_of UBERON:0001211
intersection_of: UBERON:0010754 ! germinal center
intersection_of: part_of UBERON:0001211 ! Peyer's patch
relationship: part_of UBERON:0001211 ! Peyer's patch
[Term]
id: UBERON:0004698
name: vena cava endothelium
def: "An endothelium that is part of a vena cava [Obol]." [OBOL:automatic]
xref: MA:0000713
xref: ncithesaurus:Vena_Cava_Endothelium
is_a: UBERON:0001919 ! endothelium of vein
relationship: part_of UBERON:0004087
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0004087 ! vena cava
relationship: part_of UBERON:0004087 ! vena cava
[Term]
id: UBERON:0004699
name: outflow tract endothelium
def: "An endothelium that is part of a outflow tract [Obol]." [OBOL:automatic]
xref: MA:0000490
xref: VHOG:0001524
is_a: UBERON:0008307 ! heart endothelium
relationship: part_of UBERON:0004145
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0004145 ! outflow tract
relationship: part_of UBERON:0004145 ! outflow tract
[Term]
id: UBERON:0004700
name: arterial system endothelium
def: "An endothelium that is part of an arterial system [Obol]." [OBOL:automatic]
xref: MA:0000703
xref: ncithesaurus:Arterial_System_Endothelium
is_a: UBERON:0004852 ! cardiovascular system endothelium
relationship: part_of UBERON:0004572
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0004572 ! arterial system
relationship: part_of UBERON:0004572 ! arterial system
[Term]
id: UBERON:0004701
name: venous system endothelium
def: "An endothelium that is part of a venous system [Obol]." [OBOL:automatic]
xref: MA:0000714
xref: ncithesaurus:Venous_System_Endothelium
is_a: UBERON:0004852 ! cardiovascular system endothelium
relationship: part_of UBERON:0004582
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0004582 ! venous system
relationship: part_of UBERON:0004582 ! venous system
[Term]
id: UBERON:0004702
name: respiratory system blood vessel endothelium
def: "A blood vessel endothelium that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "lung endothelium" RELATED [BTO:0004128]
synonym: "respiratory endothelium" RELATED [BTO:0004128]
xref: BTO:0004128
xref: MA:0001805
is_a: UBERON:0004638 ! blood vessel endothelium
is_a: UBERON:0004807 ! respiratory system epithelium
relationship: part_of UBERON:0001004
intersection_of: UBERON:0004638 ! blood vessel endothelium
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0003504 ! respiratory system blood vessel
[Term]
id: UBERON:0004703
name: dorsal thalamus
comment: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659
subset: vertebrate_core
synonym: "dorsal thalamus" RELATED [FMA:62007]
synonym: "thalamus, pars dorsalis" EXACT [ZFA:0000653]
xref: BM:Die-Th
xref: EHDAA2:0000692
xref: MA:0000180
xref: ncithesaurus:Dorsal_Thalamus
xref: TAO:0000653
xref: ZFA:0000653
is_a: UBERON:0002730 ! regional part of thalamus
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0004704
name: bone fossa
def: "a depression or hollow in a bone[WP]." [Wikipedia:Fossa#Anatomy]
comment: AO notes: General Anatomical term in FMA; not restricted to bone in ncit; surface feature in VSAO; note that entities named 'fossa' are cavities in FMA, hence placement here
subset: vertebrate_core
synonym: "fossa" EXACT []
xref: AAO:0010439
xref: FMA:45791
xref: ncithesaurus:Fossa
xref: TAO:0001743
xref: VSAO:0005069
xref: ZFA:0005388
property_value: UBPROP:0000001 "Anatomical space that is a concavity, shallow depression, or groove on a bone.[TAO]" xsd:string
is_a: UBERON:0002553 {source="FMA-implied"} ! anatomical cavity
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0004705
name: fenestra
def: "an opening in the skull or other bones[WP]." [Wikipedia:Fenestra]
comment: TODO check fenestra vs fossa. fenestra = hole, fossa = depression with bottom?
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0004706
name: bulbus cordis
def: "The bulbus cordis lies ventral to the primitive ventricle after the developing heart assumes its S-shaped form. Together, the bulbus cordis and the primitive ventricle give rise to the ventricle of the formed heart. The adjacent walls of the bulbus cordis and ventricle approximate, fuse, and finally disappear, and the bulbus cordis now communicates freely with the right ventricle, while the junction of the bulbus with the truncus arteriosus is brought directly ventral to and applied to the atrial canal. By the upgrowth of the ventricular septum the bulbus cordis is in great measure separated from the left ventricle, but remains an integral part of the right ventricle, of which it forms the infundibulum[WP]." [Wikipedia:Bulbus_cordis]
comment: todo - check ZFA
subset: vertebrate_core
synonym: "primitive right ventricle endocardium" EXACT [EHDAA2:0000197, JB:def]
xref: EHDAA2:0000197
xref: EHDAA:438
xref: EHDAA:768
xref: EMAPA:16216
xref: EMAPA:16333
xref: FMA:70300
xref: http://upload.wikimedia.org/wikipedia/commons/c/c9/Gray466.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c9/Gray466.png/200px-Gray466.png
xref: ncithesaurus:Bulbus_Cordis
xref: SCTID:361525002
xref: TAO:0000173
xref: ZFA:0000173
property_value: UBPROP:0000001 "A pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches. The bulbus arteriosus has three distinct layers. Hu et al. 2000.[TAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0004707
name: pharyngula stage
def: "A stage that follows the blastula, gastrula and neurula stages. At the pharyngula stage, all vertebrate embryos show remarkable similarities." [Wikipedia:Pharyngula]
comment: TODO: check with evo-devo biologists
synonym: "pharyngula" RELATED []
synonym: "phylotypic stage" EXACT []
xref: OGES:000006
is_a: UBERON:0000067 ! embryo stage part
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000110 ! neurula stage
[Term]
id: UBERON:0004708
name: limb/fin
alt_id: UBERON:0009872
comment: this class is the union of the classes limb, pectoral fin and pelvic fin.
synonym: "girdle-associated appendage" EXACT [UBERON:cjm]
synonym: "jointed paired lateral appendage" NARROW [UBERON:cjm]
synonym: "limb or fin" EXACT [UBERON:cjm]
synonym: "paired appendage" EXACT [VSAO:0000067]
synonym: "pectoral or pelvic appendage" EXACT [UBERON:cjm]
synonym: "pelvic/pectoral appendage" EXACT [UBERON:cjm]
xref: VSAO:0000067
is_a: UBERON:0000026 {source="VSAO"} ! appendage
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0010707
intersection_of: UBERON:0000026 ! appendage
intersection_of: part_of UBERON:0010707 ! appendage girdle complex
relationship: connected_to UBERON:0007823 ! appendage girdle region
relationship: develops_from UBERON:0004357 {evidence="definitional"} ! limb/fin bud
relationship: part_of UBERON:0010707 {source="VSAO"} ! appendage girdle complex
relationship: part_of UBERON:0010707 ! appendage girdle complex
[Term]
id: UBERON:0004709
name: pelvic appendage
alt_id: UBERON:0009876
def: "Paired appendage that consists of the posterior appendicular skeleton and associated soft and hard tissues, but excludes the pelvic girdle and its associated soft and hard tissues." [VSAO:0000150]
comment: VSAO notes - in contrast to VSAO, we include separate subclasses for limbs and fins
synonym: "hindlimb/pelvic fin" EXACT [UBERON:cjm]
synonym: "pelvic appendage" EXACT [VSAO:0000126]
synonym: "pelvic limb/fin" EXACT [UBERON:cjm]
xref: VSAO:0000126
is_a: UBERON:0004708 ! limb/fin
relationship: part_of UBERON:0010709
intersection_of: UBERON:0004708 ! limb/fin
intersection_of: part_of UBERON:0010709 ! pelvic complex
relationship: connected_to UBERON:0001271 ! pelvic girdle region
relationship: develops_from UBERON:0005420 {evidence="definitional"} ! hindlimb/pelvic fin bud
relationship: part_of UBERON:0010709 ! pelvic complex
[Term]
id: UBERON:0004710
name: pectoral appendage
alt_id: UBERON:0009875
def: "Paired appendage that consists of the anterior appendicular skeleton and associated soft and hard tissues, but excludes the pectoral girdle and its associated soft and hard tissues." [VSAO:0000150-modified]
synonym: "anterior limb/fin" EXACT [UBERON:cjm]
synonym: "anterior paired appendage" EXACT [VSAO:0000148]
synonym: "forelimb - pectoral fin" EXACT [VHOG:0001753]
synonym: "forelimb or pectoral fin" EXACT [UBERON:cjm]
synonym: "forelimb/pectoral fin" EXACT [UBERON:cjm]
synonym: "pectoral limb/fin" EXACT [UBERON:cjm]
xref: VHOG:0001753
xref: VSAO:0000125
is_a: UBERON:0004708 ! limb/fin
relationship: part_of UBERON:0010708
intersection_of: UBERON:0004708 ! limb/fin
intersection_of: part_of UBERON:0010708 ! pectoral complex
relationship: connected_to UBERON:0001421 ! pectoral girdle region
relationship: develops_from UBERON:0005419 {evidence="definitional"} ! forelimb/pectoral fin bud
relationship: part_of UBERON:0010708 ! pectoral complex
[Term]
id: UBERON:0004711
name: jugular vein
def: "Any one of the several large veins of the neck that drain blood from the head[BTO]. Veins in the neck which drain the brain, face, and neck into the brachiocephalic or subclavian veins[GAID]. The jugular veins are veins that bring deoxygenated blood from the head back to the heart via the superior vena cava[WP]." [BTO:0001744, Wikipedia:Jugular_vein]
synonym: "jugular" RELATED []
synonym: "vena jugularis" RELATED [BTO:0001744]
xref: BTO:0001744
xref: EMAPA:18638
xref: GAID:536
xref: http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Gray558.png/200px-Gray558.png
xref: MA:0002154
xref: MESH:A.07.231.908.498
xref: ncithesaurus:Jugular_Vein
xref: SCTID:244403000
is_a: UBERON:0003502 ! neck blood vessel
is_a: UBERON:0009141 ! craniocervical region vein
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0004713
name: corpus cavernosum penis
def: "One of the columns of erectile tissue forming the dorsum and sides of the penis." [BTO:0002019, Wikipedia:Corpus_cavernosum_penis]
synonym: "cavernous body of penis" RELATED [BTO:0002019]
synonym: "corpus cavernosum" BROAD [BTO:0002019]
synonym: "corpus cavernosum of penis" EXACT [FMA:19618]
synonym: "corpus cavernosum penis" RELATED LATIN [Wikipedia:Corpus_cavernosum_penis]
synonym: "corpus spongiosum penis" RELATED INCONSISTENT [BTO:0002019]
synonym: "penile corpus cavernosum" RELATED [BTO:0002019]
synonym: "penis erectile tissue" BROAD [MA:0001743]
synonym: "spongy body of male urethra" RELATED [BTO:0002019]
synonym: "spongy body of penis" RELATED [BTO:0002019]
xref: BTO:0002019
xref: EMAPA:29850
xref: EMAPA:29856
xref: FMA:19618
xref: http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Gray1155.png/200px-Gray1155.png
xref: MA:0001743
xref: ncithesaurus:Corpora_Cavernosa
xref: ncithesaurus:Penis_Erectile_Tissue
xref: SCTID:245468004
xref: Wikipedia:Corpus_cavernosum_penis
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006609 ! corpus cavernosum
relationship: part_of UBERON:0000989
intersection_of: UBERON:0006609 ! corpus cavernosum
intersection_of: part_of UBERON:0000989 ! penis
relationship: part_of UBERON:0000989 ! penis
[Term]
id: UBERON:0004714
name: septum pellucidum
def: "The septum pellucidum is made up of two thin sheets of mostly glial-like elements that abut each other in the midline and have a potential space between them. Those sheets also separate the left and right lateral ventricles from each other. At the base of the sheets rostrally, however, are the septal nuclei, which are important components of the limbic system.a thin, triangular, vertical membrane separating the lateral ventricles of the brain. It separates the anterior horn of the left and right lateral ventricles. It runs as a sheet from the corpus callosum down to the fornix. When the hemispheres are cut apart, the septum remains on one hemisphere, usually the left. The septum pellucidum is implicated in pleasure, mood, rage, sexual gratification and more. Lesions of the septum lead to sham rage. Stimulation of the medial forebrain bundle (primary efferent of the septum) restores normal behavior." [BTO:0003448, Wikipedia:Septum_pellucidum]
synonym: "pellucidum" RELATED [BTO:0003448]
synonym: "septum lucidum" RELATED [BTO:0003448]
synonym: "supracommissural septum" EXACT [FMA:61844]
xref: BTO:0003448
xref: FMA:61844
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: MA:0002979
xref: MESH:A.08.186.211.276.814
xref: ncithesaurus:Septum_Pellucidum
xref: NIF_GrossAnatomy:birnlex_1315
xref: SCTID:362313003
xref: Wikipedia:Septum_pellucidum
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000446 ! septum of telencephalon
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0004715
name: annulus fibrosus disci intervertebralis
def: "The ring of fibrocartilage and fibrous tissue forming the circumference of the intervertebral disc; surrounds the nucleus pulposus, which is prone to herniation when the annulus fibrosus is compromised." [BTO:0003629, Wikipedia:Annulus_fibrosus_disci_intervertebralis]
synonym: "annulus fibrosus" BROAD [MA:0000111]
synonym: "annulus fibrosus of intervertebral disc" RELATED [BTO:0003629]
synonym: "anulus fibrosus (diskus intervertebralis)" EXACT [FMA:13551]
synonym: "anulus fibrosus of intervertebral disk" EXACT [FMA:13551]
synonym: "fibrous ring of intervertebral disc" RELATED [BTO:0003629]
xref: BTO:0003629
xref: FMA:13551
xref: http://upload.wikimedia.org/wikipedia/commons/d/d9/Cervical_vertebra_english.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d9/Cervical_vertebra_english.png/200px-Cervical_vertebra_english.png
xref: MA:0000111
xref: Wikipedia:Annulus_fibrosus_disci_intervertebralis
is_a: UBERON:0006444 ! annulus fibrosus
relationship: part_of UBERON:0001066
intersection_of: UBERON:0006444 ! annulus fibrosus
intersection_of: part_of UBERON:0001066 ! intervertebral disk
disjoint_from: UBERON:0006008 ! fibrous ring of heart
relationship: part_of UBERON:0001066 ! intervertebral disk
[Term]
id: UBERON:0004716
name: conceptus
def: "The embryo and its adnexa (appendages or adjunct parts) or associated membranes (i.e. the products of conception) The conceptus includes all structures that develop from the zygote, both embryonic and extraembryonic. It includes the embryo as well as the embryonic part of the placenta and its associated membranes - amnion, chorion (gestational sac), and yolk sac[WP]." [BTO:0003834, Wikipedia:Conceptus]
xref: AEO:0000194
xref: BTO:0003834
xref: EHDAA2:0000001
xref: EHDAA2:0003235
xref: ncithesaurus:Conceptus
xref: Wikipedia:Conceptus
is_a: UBERON:0000061 ! anatomical structure
relationship: existence_ends_with UBERON:0000068 ! embryo stage
relationship: existence_starts_with UBERON:0000068 ! embryo stage
relationship: has_part UBERON:0000478 ! extraembryonic structure
relationship: has_part UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0004717
name: Brodmann area 29
def: "A cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30." [BTO:0003978]
synonym: "area 29 of brodmann" EXACT [FMA:68626]
synonym: "brodmann's area 29" EXACT [FMA:68626]
synonym: "granular retrolimbic area 29" RELATED [BTO:0003978, Wikipedia:Brodmann_area_29]
xref: BTO:0003978
xref: FMA:68626
xref: Wikipedia:Brodmann_area_29
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0004718
name: Brodmann area 26
def: "In the human this area is called ectosplenial area 26. It is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. It is a narrow band located in the isthmus of cingulate gyrus adjacent to the fasciolar gyrus internally. It is bounded externally by the granular retrolimbic area 29." [BTO:0003979]
synonym: "area 26 of brodmann" EXACT [FMA:68623]
synonym: "ectosplenial area" EXACT [FMA:68623]
synonym: "ectosplenial area 26" RELATED [BTO:0003979, Wikipedia:Brodmann_area_26]
xref: BTO:0003979
xref: FMA:68623
xref: Wikipedia:Brodmann_area_26
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0004719
name: arcuate vein
def: "The arcuate vein is a vessel of the renal circulation. It is located at the border of the renal cortex and renal medulla." [Wikipedia:Arcuate_vein]
synonym: "arcuate veins" RELATED [Wikipedia:Arcuate_vein]
synonym: "venae arcuatae renis" RELATED LATIN [Wikipedia:Arcuate_vein]
xref: EMAPA:28221
xref: http://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png
xref: MA:0002593
xref: Wikipedia:Arcuate_vein
is_a: UBERON:0003517 ! kidney blood vessel
[Term]
id: UBERON:0004720
name: cerebellar vermis
def: "Part of the structure of animal brains, the cerebellar vermis is a narrow, wormlike structure between the hemispheres of the cerebellum." [Wikipedia:Cerebellar_vermis]
synonym: "cerebellum vermis" EXACT [FMA:76928]
synonym: "vermal parts of the cerebellum" EXACT [NIF_GrossAnatomy:birnlex_1175]
synonym: "vermal regions" EXACT [ABA:VERM]
synonym: "vermis" RELATED [Wikipedia:Cerebellar_vermis]
synonym: "vermis cerebelli" RELATED LATIN [Wikipedia:Cerebellar_vermis]
synonym: "vermis cerebelli [i-x]" EXACT [FMA:76928, FMA:TA]
synonym: "vermis of cerebellum" EXACT [FMA:76928]
synonym: "vermis of cerebellum [i-x]" EXACT [FMA:76928]
xref: ABA:VERM
xref: EV:0100298
xref: FMA:76928
xref: http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/CerebellumDiv.png/200px-CerebellumDiv.png
xref: MA:0000202
xref: ncithesaurus:Vermis
xref: NIF_GrossAnatomy:birnlex_1175
xref: SCTID:279105006
is_a: UBERON:0002749 ! regional part of cerebellar cortex
relationship: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0002129 {source="ABA"} ! cerebellar cortex
[Term]
id: UBERON:0004721
name: crista ampullaris
def: "The crista ampullaris is the sensory organ of rotation located in the semicircular canal of the inner ear. The function of the crista ampullaris is to sense angular acceleration and deceleration." [Wikipedia:Crista_ampullaris]
subset: organ_slim
synonym: "ampullary crest" RELATED [MA:0002771]
synonym: "ampullary crest of semicircular duct" EXACT [FMA:77714]
synonym: "cristae ampullares" RELATED [Wikipedia:Crista_ampullaris]
xref: FMA:77714
xref: http://upload.wikimedia.org/wikipedia/commons/e/ec/Semicircular_canal_-_ampulla.png
xref: MA:0002771
xref: ncithesaurus:Ampullary_Crest
xref: SCTID:368953000
xref: Wikipedia:Crista_ampullaris
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla
[Term]
id: UBERON:0004722
name: deep cervical lymph node
def: "The deep cervical lymph nodes are a group of cervical lymph nodes found near the internal jugular vein. They can be divided into upper and lower groups, or superior and inferior groups. Alternatively, they can be divided into deep anterior cervical lymph nodes and deep lateral cervical lymph nodes. They can also be divided into three groups: superior deep jugular, middle deep jugular, and 'inferior deep jugular'." [Wikipedia:Deep_cervical_lymph_nodes]
synonym: "lower jugular nodes" RELATED [Wikipedia:Deep_cervical_lymph_nodes]
synonym: "middle jugular nodes" RELATED [Wikipedia:Deep_cervical_lymph_nodes]
synonym: "upper jugular nodes" RELATED [Wikipedia:Deep_cervical_lymph_nodes]
xref: http://upload.wikimedia.org/wikipedia/commons/b/b6/Illu_lymph_chain02.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Illu_lymph_chain02.jpg/200px-Illu_lymph_chain02.jpg
xref: MA:0002885
xref: ncithesaurus:Deep_Cervical_Lymph_Node
xref: SCTID:279145002
xref: Wikipedia:Deep_cervical_lymph_nodes
is_a: UBERON:0002429 ! cervical lymph node
[Term]
id: UBERON:0004723
name: interlobular artery
def: "the branches of the arcuate arteries of the kidney that radiate outward throught the renal columns and supply the glomeruli[MP]. The first set of renal bloodvessels, the interlobular arteries (or cortical radiate arteries, or cortical radial arteries), are given off at right angles from the side of the arcuate arteries looking toward the cortical substance, and pass directly outward between the medullary rays to reach the fibrous tunic, where they end in the capillary network of this part. These vessels do not anastomose with each other, but form what are called end-arteries. In their outward course they give off lateral branches; these are the afferent vessels for the renal corpuscles; they enter the capsule, and end in the glomerulus. From each tuft the corresponding efferent vessel arises, and, having made its egress from the capsule near to the point where the afferent vessel enters, breaks up into a number of branches, which form a dense plexus within Bowman's capsule." [MP:0011316, Wikipedia:Interlobular_arteries]
synonym: "arteriae corticales radiatae, arteriae interlobulares renis" RELATED LATIN [Wikipedia:Interlobular_arteries]
synonym: "cortical radial arteries" RELATED [Wikipedia:Interlobular_arteries]
synonym: "interlobular" RELATED [Wikipedia:Interlobular_arteries]
synonym: "kidney interlobular artery" EXACT [MP:0011316]
xref: EMAPA:28212
xref: FMA:70498
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0002584
xref: ncithesaurus:Interlobular_Artery
xref: SCTID:76147008
xref: Wikipedia:Interlobular_arteries
is_a: UBERON:0003644 ! kidney arterial blood vessel
disjoint_from: UBERON:0009885 ! interlobar artery
[Term]
id: UBERON:0004724
name: medial palpebral ligament
def: "The medial palpebral ligament (tendo oculi), about 4 mm. in length and 2 mm. in breadth, is attached to the frontal process of the maxilla in front of the lacrimal groove. Crossing the lacrimal sac, it divides into two parts, upper and lower, each attached to the medial end of the corresponding tarsus. As the ligament crosses the lacrimal sac, a strong aponeurotic is given off from its posterior surface; this expands over the sac, and is attached to the posterior lacrimal crest." [Wikipedia:Medial_palpebral_ligament]
synonym: "l. palpebrale mediale" RELATED LATIN [Wikipedia:Medial_palpebral_ligament]
xref: http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6f/Gray894.png/200px-Gray894.png
xref: MA:0001258
xref: ncithesaurus:Medial_Palpebral_Ligament
xref: SCTID:280578002
xref: Wikipedia:Medial_palpebral_ligament
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003581 ! eyelid connective tissue
relationship: part_of UBERON:0004772 ! eyelid tarsus
[Term]
id: UBERON:0004725
name: piriform cortex
def: "In anatomy of animals, the piriform cortex, or pyriform cortex is a region in the brain. The piriform cortex is part of the rhinencephalon situated in the telencephalon. The function of the piriform cortex relates to olfaction, which is the perception of smells. Sometimes called the olfactory cortex, olfactory lobe or paleopallium, piriform cortical regions are present in the brains of amphibians, reptiles and mammals. The piriform cortex is among three areas that emerge in the telencephalon of amphibians, situated caudally to a dorsal area, which is caudal to a hippocampal area. Farther along the phylogenic timeline, the telencephalic bulb of reptiles as viewed in a cross section of the transverse plane extends with the archipallial hippocampus folding toward the midline and down as the dorsal area begins to form a recognizable cortex. As mammalian cerebrums developed, volume of the dorsal cortex increased in slightly greater proportion, as compared proportionally with increased overall brain volume, until it enveloped the hippocampal regions. Recognized as neopallium or neocortex, enlarged dorsal areas envelop the paleopallial piriform cortex in humans and Old World monkeys. Among taxonomic groupings of mammals, the piriform cortex and the olfactory bulb become proportionally smaller in the brains of phylogenically younger species. The piriform cortex occupies a greater proportion of the overall brain and of the telencephalic brains of insectivores than in primates. The piriform cortex continues to occupy a consistent albeit small and declining proportion of the increasingly large telencephalon in the most recent primate species while the volume of the olfactory bulb becomes less in proportion. It is Brodmann area 27." [Wikipedia:Piriform_cortex]
synonym: "cortex piriformis" RELATED LATIN [Wikipedia:Piriform_cortex]
synonym: "piriform area" RELATED [BTO:0002651, MA:0000978]
synonym: "piriform lobe" RELATED [BTO:0002651]
synonym: "primary olfactory areas" EXACT [NIF_GrossAnatomy:birnlex_2706]
synonym: "primary olfactory cortex" RELATED INCONSISTENT [Wikipedia:Piriform_cortex]
synonym: "pyriform cortex" RELATED [Wikipedia:Piriform_cortex]
synonym: "pyriform lobe" RELATED [Wikipedia:Piriform_cortex]
xref: BTO:0002651
xref: EV:0100178
xref: http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG
xref: MA:0000978
xref: NIF_GrossAnatomy:birnlex_1097
xref: SCTID:369098004
xref: Wikipedia:Piriform_cortex
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0002894 ! olfactory cortex
[Term]
id: UBERON:0004726
name: vasa recta
def: "In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle." [Wikipedia:Vasa_recta]
comment: TODO - is this a vein or set of veins? in MA it is a venous blood vessel
synonym: "arteria recta" RELATED [Wikipedia:Vasa_recta]
synonym: "arteriae rectae" RELATED [Wikipedia:Vasa_recta]
synonym: "arteriolae rectae renis" EXACT [FMA:72006, FMA:TA]
synonym: "arteriolae rectae renis" RELATED LATIN [Wikipedia:Vasa_recta]
synonym: "arteriolae recti" RELATED [Wikipedia:Vasa_recta]
synonym: "kidney vasa recta" EXACT [MP:0011324]
synonym: "renal medullary capillary" EXACT [EMAPA:30043]
synonym: "set of straight arterioles of kidney" EXACT [FMA:72006]
synonym: "straight arterioles of kidney" EXACT [FMA:72006]
synonym: "vasa recta of kidney" EXACT [FMA:72006]
synonym: "vasa recta renis" EXACT [FMA:72006, FMA:TA]
synonym: "vasa rectae" RELATED [Wikipedia:Vasa_recta]
xref: EMAPA:30043
xref: FMA:72006
xref: galen:ArteriaeRectae
xref: http://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Kidney_nephron.png/200px-Kidney_nephron.png
xref: MA:0002595
is_a: UBERON:0001140 ! renal vein
[Term]
id: UBERON:0004727
name: cochlear nerve
def: "a nerve in the head that carries signals from the cochlea of the inner ear to the brain. It is part of the vestibulocochlear nerve, the 8th cranial nerve which is found in higher vertebrates; the other portion of the 8th cranial nerve is the vestibular nerve which carries spatial orientation information from the semicircular canals. The cochlear nerve is a sensory nerve, one which conducts to the brain information about the environment, in this case acoustic energy impinging on the tympanic membrane. The cochlear nerve arises from within the cochlea and extends to the brainstem, where its fibers make contact with the cochlear nucleus, the next stage of neural processing in the auditory system[WP]." [ISBN:Wikipedia:Cochlear_nerve]
subset: uberon_slim
synonym: "auditory nerve" EXACT [FMA:53431]
synonym: "cochlear root of acoustic nerve" EXACT [FMA:53431]
synonym: "cochlear root of eighth cranial nerve" EXACT [FMA:53431]
synonym: "nervus vestibulocochlearis" RELATED [BTO:0003490]
synonym: "vestibulocochlear VIII nerve cochlear component" EXACT [MA:0001110]
xref: BM:VIIIN
xref: BTO:0003490
xref: EHDAA2:0002195
xref: FMA:53431
xref: GAID:723
xref: MA:0001110
xref: MESH:A.08.800.800.120.910.120
xref: ncithesaurus:Cochlear_Nerve
xref: OpenCyc:Mx4rwIhQfZwpEbGdrcN5Y29ycA
xref: SCTID:280286001
xref: VHOG:0001182
is_a: UBERON:0001785 ! cranial nerve
relationship: branch_of UBERON:0001648 ! vestibulocochlear nerve
[Term]
id: UBERON:0004728
name: amphibian larval stage
def: "Amphibian larvae, sometimes called pollywogs or tadpoles, hatch from eggs and begin to grow limbs and other adult physical features at various times, depending on the species, before they metamorphose into the adult form." [GO:0002117]
synonym: "polliwog" NARROW SENSU [Wikipedia:Larva]
synonym: "polliwog stage" NARROW SENSU [Wikipedia:Larva]
synonym: "tadpole" NARROW SENSU [Wikipedia:Larva]
synonym: "tadpole stage" NARROW SENSU [Wikipedia:Larva]
xref: XAO:1000008
is_a: UBERON:0000069 ! larval stage
[Term]
id: UBERON:0004729
name: nematode larval stage
def: "Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew." [GO:0002119]
xref: WBls:0000023
is_a: UBERON:0000069 ! larval stage
[Term]
id: UBERON:0004730
name: instar larval stage
def: "This begins with the newly hatched first-instar larva, through its maturation to the end of the last larval stage. An example of this process is found in Drosophila melanogaster." [GO:0002168]
xref: FBdv:00005336
is_a: UBERON:0000069 ! larval stage
[Term]
id: UBERON:0004731
name: neuromere
def: "A segment of the developing neural tube[MP]. A metameric segment of the central nervous system[ZFA]. morphologically or molecularly defined transient segments of the early developing brain. Rhombomeres are such segments that make up the rhombencephalon or hindbrain. [WP]." [MP:0003208, Wikipedia:Neuromere]
comment: WP says: "More controversially, some argue that there exist early developmental segments that give rise to structures of the midbrain (mesomeres) and forebrain (prosomeres).". Note that ZFA has spinal neuromere
synonym: "neural segment" EXACT []
synonym: "neural tube segment" EXACT []
synonym: "neuromere" EXACT []
xref: TAO:0001328
xref: ZFA:0001328
property_value: UBPROP:0000001 "A metameric segment of the central nervous system.[TAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004732 ! segmental subdivision of nervous system
relationship: part_of UBERON:0001049
intersection_of: UBERON:0004732 ! segmental subdivision of nervous system
intersection_of: part_of UBERON:0001049 ! neural tube
relationship: part_of UBERON:0001049 ! neural tube
created_by: Melissa Haendel
creation_date: 2009-06-18T09:00:04Z
[Term]
id: UBERON:0004732
name: segmental subdivision of nervous system
def: "An organ segment that is part of a nervous system [Obol]." [OBOL:automatic]
comment: Editor note: revisit this after CARO is revised and/or we have defined metameric segment
synonym: "neuromere" RELATED [FBbt:00005140]
xref: FBbt:00005140
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001016
intersection_of: UBERON:0000063 ! organ segment
intersection_of: part_of UBERON:0001016 ! nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0004733
name: segmental subdivision of hindbrain
def: "An organ segment that is part of a hindbrain [Obol]." [OBOL:automatic]
synonym: "hindbrain segment" EXACT [FMA:61998]
synonym: "segment of hindbrain" EXACT [FMA:61998]
xref: FMA:61998
is_a: UBERON:0004732 ! segmental subdivision of nervous system
relationship: part_of UBERON:0002028
intersection_of: UBERON:0000063 ! organ segment
intersection_of: part_of UBERON:0002028 ! hindbrain
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0004734
name: gastrula
alt_id: UBERON:0007012
def: "Organism at the gastrula stage." [Wikipedia:Gastrula]
synonym: "gastrula embryo" EXACT [BILA:0000060]
xref: BILA:0000060
xref: BTO:0001403
xref: GAID:1302
xref: MESH:A.16.254.412
xref: MIAA:0000179
xref: ncithesaurus:Gastrula
is_a: UBERON:0000922 ! embryo
relationship: existence_starts_and_ends_during UBERON:0000109
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_starts_and_ends_during UBERON:0000109 ! gastrula stage
relationship: develops_from UBERON:0000307 ! blastula
relationship: existence_starts_and_ends_during UBERON:0000109 ! gastrula stage
[Term]
id: UBERON:0004735
name: archenteron
def: "The cavity of a gastrula forming a primitive gut[BTO]. The primitive gut that forms during gastrulation in the developing blastula. It develops into the digestive tract of an animal. As primary mesenchyme cells detach from the vegetal pole in the blastula and enter the fluid filled cavity in the center (the blastocoel), the remaining cells at the vegetal pole flatten to form a vegetal plate. This buckles inwards towards the blastocoel in a process called invagination. The cells continue to be rearranged until the shallow dip formed by invagination transforms into a deeper, narrower pouch formed by the gastrula's endoderm. This narrowing and lengthening of the archenteron is driven by convergent extension. The open end of the archenteron is called the blastopore. The filopodia--thin fibers formed by the mesenchyme cells--found in a late gastrula contract to drag the tip of the archenteron across the blastocoel. The endoderm of the archenteron will fuse with the ectoderm of the blastocoel wall. At this point gastrulation is complete, and the gastrula has a functional digestive tube. The indentation that is actually formed is called the lip of the blastopore in amphibians and fish, and the primitive streak in birds and mammals. Each is controlled by the dorsal blastopore, and primitive node (also known as Hensen's node), respectively." [Wikipedia:Archenteron]
synonym: "gastrocoel" RELATED [XAO:0000092]
synonym: "mesenteron" RELATED [UBERON:cjm]
xref: AAO:0010430
xref: BTO:0001696
xref: XAO:0000092
property_value: "dubious_for_taxon" NCBITaxon:7955
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0004734 ! gastrula
relationship: part_of UBERON:0007026 ! primitive gut
[Term]
id: UBERON:0004736
name: metanephric glomerulus
def: "glomerulus of the mature vertebrate kidney, or metanephros." [GO:0072224]
synonym: "glomerulus of metanephros" EXACT []
xref: VHOG:0001242
is_a: UBERON:0000074 ! renal glomerulus
relationship: part_of UBERON:0000081
intersection_of: UBERON:0000074 ! renal glomerulus
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0004737
name: metanephric collecting duct
def: "A collecting duct of renal tubule that is part of a metanephros [Obol]." [OBOL:automatic]
synonym: "collecting duct of metanephros" EXACT []
xref: VHOG:0000983
is_a: UBERON:0001232 ! collecting duct of renal tubule
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001232 ! collecting duct of renal tubule
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0004738
name: metanephric juxtaglomerular apparatus
def: "juxtaglomerular apparatus of the mature vertebrate kidney, or metanephros." [GO:0072206]
synonym: "juxtaglomerular apparatus of metanephros" EXACT []
is_a: UBERON:0002303 ! juxtaglomerular apparatus
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000081
intersection_of: UBERON:0002303 ! juxtaglomerular apparatus
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0004739
name: pronephric glomerulus
alt_id: UBERON:0004191
def: "The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment" [GO:0072013]
comment: a glomus differs from a glomerulus in that each vascular glomus services several tubules. ISBN10:0073040584 "Vertebrates, Kardong"
synonym: "glomerulus of pronephros" EXACT []
synonym: "glomus" EXACT [XAO:0000318]
xref: AAO:0011049
xref: SCTID:360548001
xref: TAO:0001557
xref: VHOG:0001237
xref: XAO:0000318
xref: ZFA:0001557
property_value: UBPROP:0000001 "Paired highly vascularized portion of the pronephros. Left and right glomeruli are fused at the midline. Begins to function between 40 and 48hpf. Drummond, 2000.[TAO]" xsd:string
property_value: UBPROP:0000001 "The filtration unit of the pronephric kidney. A glomus is a glomerulus that spans more than one body segment. It is the vascularized filter of the pronephric kidney. Blood is filtered through the glomus and the filtrate deposited into the coelom early in development, or the nephrocoel later in development. The Xenopus glomus contains podocytes with well developed foot processes that are anatomically indistinguishable from the podocytes of adult glomeruli. The two glomera are linked via a narrow bridge called the glomeral nexus.[AAO]" xsd:string
is_a: UBERON:0000074 ! renal glomerulus
relationship: part_of UBERON:0002120
intersection_of: UBERON:0000074 ! renal glomerulus
intersection_of: part_of UBERON:0002120 ! pronephros
relationship: develops_from UBERON:0007128 ! glomeral mesenchyme
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0004740
name: basibranchial
def: "Median ventral cartilage or bony element at the ventral point of a branchial arch, behind the tongue." [http://www.fishbase.org/Glossary/Glossary.php?q=basibranchial&sc=is, http://www.merriam-webster.com/dictionary/basibranchial]
synonym: "basibranchials" EXACT [ZFA:0000170]
synonym: "copula I" RELATED [AAO:0000686]
xref: AAO:0000686
xref: EFO:0003503
xref: TAO:0000170
xref: ZFA:0000170
property_value: UBPROP:0000001 "Medial element to which other parts of the hyoid apparatus are attached.[AAO]" xsd:string
property_value: UBPROP:0000001 "Replacement bone that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from copula (TAO:0001220)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of hyoid apparatus skeleton (AAO:0000682)[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass basibranchial element (TAO:0001914)[TAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003457 ! head bone
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0005886 {source="ZFA"} ! post-hyoid pharyngeal arch skeleton
[Term]
id: UBERON:0004741
name: cleithrum
def: "Dermal bone on the margin of the scapula. The cleithrum is attached to the skull in fishes, but free from the latter in amphibians and disappears early in the evolution of reptiles." [VSAO:0000187, Wikipedia:Cleithrum]
comment: Taxon notes: Found in some early members of Chelonia (e.g. Triassochelys), but missing in all later forms.[VSAO]
synonym: "cleithra" EXACT PLURAL [ZFA:0000184]
synonym: "cleithrum bone" EXACT PLURAL []
xref: AAO:0000750
xref: EFO:0003507
xref: TAO:0000184
xref: VSAO:0000187
xref: ZFA:0000184
property_value: RO:0002161 NCBITaxon:40674
property_value: UBPROP:0000001 "Dermal bone that articulates dorsally with the supracleithrum and ventro-medially with the scapula and coracoid and mesocoracoid bone when the last bone is present. With the posttemporal and supracleithrum, the cleithrum supports the primary pectoral girdle. The cleithrum is located immediately behind the branchial cavity.[TAO]" xsd:string
property_value: UBPROP:0000001 "Paired bones of intramembranous origin. Each cleithrum extends medially from a point near the suprascapular-scapular articulation to invest the anterior margin of the suprascapula, and occasionoally it may extend to the dorsal (medial) surface. Usually, this bone is bifurcate.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of scapular area (AAO:0000935)[AAO]" xsd:string
is_a: UBERON:0007829 ! pectoral girdle bone
is_a: UBERON:0008907 {source="ZFIN:ZDB-PUB-060210-7", source="ZFA"} ! dermal bone
relationship: connected_to UBERON:0003113 {gci_relation="part_of", gci_filler="NCBITaxon:32443"} ! dermatocranium
relationship: part_of UBERON:0007831 {source="ZFA"} ! skeleton of pectoral girdle
[Term]
id: UBERON:0004742
name: dentary
def: "The dentary is a dermal bone that forms the antero-lateral part of the lower jaw in fishes and amphibians, extending to the whole lower jaw in mammals[VHOG,modified]." [VHOG:0001022]
comment: Taxon notes: In lobe-finned fishes and the early fossil tetrapods, the bone homologous to the mandible of mammals is merely the largest of several bones in the lower jaw. In such animals, it is referred to as the dentary bone, and forms the body of the outer surface of the jaw. It is bordered below by a number of splenial bones, while the angle of the jaw is formed by a lower angular bone and a suprangular bone just above it. The inner surface of the jaw is lined by a prearticular bone, while the articular bone forms the articulation with the skull proper. Finally a set of three narrow coronoid bones lie above the prearticular bone. As the name implies, the majority of the teeth are attached to the dentary, but there are commonly also teeth on the coronoid bones, and sometimes on the prearticular as well. This complex primitive pattern has, however, been simplified to various degrees in the great majority of vertebrates, as bones have either fused or vanished entirely. In teleosts, only the dentary, articular, and angular bones remain, while in living amphibians, the dentary is accompanied only by the prearticular, and, in salamanders, one of the coronoids. The lower jaw of reptiles has only a single coronoid and splenial, but retains all the other primitive bones except the prearticular.
synonym: "dentale" RELATED [AAO:0000124]
synonym: "dentary bone" EXACT [ZFA:0000191]
synonym: "os dentale" RELATED [AAO:0000124]
synonym: "sur-angulaire" RELATED [AAO:0000124]
xref: AAO:0000124
xref: EFO:0003508
xref: http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif
xref: TAO:0000191
xref: VHOG:0001022
xref: ZFA:0000191
property_value: UBPROP:0000001 "Dermal bone that is usually the anteriormost bone of the lower jaw, and that articulates with the angular, or anguloarticular bone, posteriorly, and carries part of the mandibular sensory canal and pore openings of the mandibular sensory canal on its lateral surface. The dentary is a paired bone.[TAO]" xsd:string
property_value: UBPROP:0000001 "Ossified element of intramembranous origin that invests the lateral margin of Meckel's cartilage thereby forming the lateral side of the mandible in anurans and salamanders (Duellman & Trueb, 1994:293). In caecilians, the dentary is part of a compound bone termed the pseudodentary.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps dentary-anguloarticular joint (TAO:0001749)[TAO]" xsd:string
is_a: UBERON:0004768 ! bone of lower jaw
is_a: UBERON:0008907 {source="ZFA"} ! dermal bone
relationship: develops_from UBERON:0010336 {source="EHDAA2"} ! mandibular process mesenchyme from neural crest
relationship: has_developmental_contribution_from UBERON:0003324 {source="EHDAA2-modified"} ! mesenchyme of lower jaw
relationship: part_of UBERON:0003113 {source="Kardong", notes="mandibular series", source="ZFA"} ! dermatocranium
relationship: part_of UBERON:0003278 {source="VHOG"} ! skeleton of lower jaw
[Term]
id: UBERON:0004743
name: coracoid bone
def: "Endochondral bone that is paired and forms part of the socket for the humerus in tetrapods and acts as base of the pectoral fin in fish." [VSAO:curator, Wikipedia:Coracoid]
comment: Editor notes: check developmental relationships. Taxon notes: In Theria, coracoid bones non-existent or fused with the shoulder blades to form coracoid processes[WP]. Procoracoid+coracoid are homologuous with coracoid of teleostomi. The coracoid is a triangular shaped-bone that usually has an anteriorly directed long process that may joins its counterpart in some fish groups. It may be perforated by the coracoid foramen or it may be notched dorsally and forms the scapulo-coracoid foramen together with a similar notch of the ventral margin of the scapula[VSAO] Terminology notes: see discussion in Kardong - suggests using procoracoid (anterior coracoid) for the element in birds, reptiles, amphibians and fish, and reserving coracoid for the new synapsid/therian structure.
synonym: "clavicula" RELATED [AAO:0000764]
synonym: "clavicula posterior" RELATED [AAO:0000764]
synonym: "clavicula vera" RELATED [AAO:0000764]
synonym: "coracoid" EXACT [ZFA:0000332]
synonym: "coracoideum" RELATED [AAO:0000764]
synonym: "coracoidien" RELATED [AAO:0000764]
synonym: "coracoids" EXACT [ZFA:0000332]
synonym: "metacoracoid " RELATED [VSAO:0000158]
synonym: "pars sternalis scapulae" RELATED [AAO:0000764]
xref: AAO:0000764
xref: TAO:0000332
xref: VSAO:0000158
xref: ZFA:0000332
property_value: RO:0002161 NCBITaxon:32525
property_value: UBPROP:0000001 "Endochondral bone that articulates dorsally with the scapula and with the mesocoracoid when the latter is present, posteriorly with the lower two or three proximal radials and antero-ventrally with the cleithrum. The coracoid develops from the scapulo-coracoid cartilage. The coracoid is paired.[TAO]" xsd:string
property_value: UBPROP:0000001 "Paired cartilaginous structures or endochondral bones located on the posterolateral portions of the zonal area of the pectoral girdle.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of zonal element (AAO:0000936)[AAO]" xsd:string
is_a: UBERON:0002513 {source="VSAO"} ! endochondral bone
is_a: UBERON:0007829 ! pectoral girdle bone
disjoint_from: UBERON:0006633 ! coracoid process of scapula
relationship: develops_from UBERON:0004753 ! scapulocoracoid
relationship: part_of UBERON:0007831 {source="VSAO"} ! skeleton of pectoral girdle
[Term]
id: UBERON:0004744
name: articular/anguloarticular
def: "." [Wikipedia:Articular]
comment: Editor notes: We create different classes for articular and malleus, in contrast to VHOG. Taxon notes (from VHOG): "According to this theory [Reichert-Gaupp theory], the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular [...]" Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948) 62:339-357. Note that TAO has a distinct class for articular - in fact we need (at least) 3 classes here - articular, anguloarticular and malleus, arranged into a single VHOG group // TODO - resolve part_of relationships
synonym: "angulaire" RELATED [AAO:0000028]
synonym: "angulare" RELATED [AAO:0000028]
synonym: "anguloarticular" EXACT [ZFA:0000467]
synonym: "articular" EXACT [ZFA:0000467]
synonym: "dermarticulare" RELATED [AAO:0000028]
synonym: "goniale" RELATED [AAO:0000028]
synonym: "operculo angulaire" RELATED [AAO:0000028]
xref: AAO:0000028
xref: EFO:0003530
xref: TAO:0000467
xref: VHOG:0000690
xref: ZFA:0000467
property_value: "homologous_to" UBERON:0001689
property_value: UBPROP:0000001 "Dermal and endochondral compound bone that results from the fusion of the dermal angular and the endochondral articular and forms the posterior part of the lower jaw. It articulates with the dentary anteriorly and with the retroarticular postero-medially. The anguloarticular is paired.[TAO]" xsd:string
property_value: UBPROP:0000001 "Endochondral ossification of the posterior articular part of Meckel's cartilage.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from articular bone (TAO:0001805)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps dentary-anguloarticular joint (TAO:0001749)[TAO]" xsd:string
is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone
is_a: UBERON:0008907 {source="ZFA"} ! dermal bone
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0011002 {source="ZFA"} ! articular cartilage condensation
relationship: overlaps UBERON:0003113 {source="ZFA-modifed", source="cjm"} ! dermatocranium
relationship: overlaps UBERON:0003278 {source="AAO"} ! skeleton of lower jaw
[Term]
id: UBERON:0004745
name: parasphenoid
def: "Long, unpaired median dermal bone that runs almost the entire length of the cranium. Contacts the prevomer anteriorly, and the prootic and basioccipital posteriorly. Anteriorly the parasphenoid is a long, thin bone that widens abruptly at the point of contact with the prootic." [ZFA:0000561]
synonym: "keilbein" RELATED [AAO:0000385]
synonym: "os parasphenoidale" RELATED [AAO:0000385]
synonym: "os sphenoideum" RELATED [AAO:0000385]
synonym: "parabasale" RELATED [AAO:0000385]
xref: AAO:0000385
xref: TAO:0000561
xref: ZFA:0000561
property_value: UBPROP:0000001 "Azygous, dermal bone of intramembranous origin that underlies the ventral surface of the braincase in anurans and salamanders. In caecilians, the parasphenoid and other bones are fused to form the Os basale.[AAO]" xsd:string
property_value: UBPROP:0000001 "Dermal bone that forms part of the base of the skull and the lateral walls of the braincase through its ascending processes. It may articulate with the vomer anteriorly, the prootics and exoccipitals laterally, and the basioccipital posteriorly. The parasphenoid is an elongate median bone.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps parasphenoid-basioccipital joint (TAO:0001832)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps parasphenoid-pterosphenoid joint (TAO:0002217)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO]" xsd:string
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0011164 ! neurocranium bone
relationship: overlaps UBERON:0001697 {source="ZFA-modified"} ! orbital region
relationship: part_of UBERON:0001703 {source="ZFA"} ! neurocranium
relationship: part_of UBERON:0003111 {source="ZFA"} ! sphenoid region
relationship: part_of UBERON:0003112 {source="ZFA"} ! olfactory region
relationship: part_of UBERON:0003113 {source="Kardong", notes="palatal series"} ! dermatocranium
[Term]
id: UBERON:0004746
name: prootic bone
def: "Paired, endochondral bones forming the anterior, and lateral walls of the otic capsules." [AAO:0000514]
synonym: "prootic" EXACT [AAO:0000514]
xref: AAO:0000514
xref: EFO:0003542
xref: TAO:0000575
xref: ZFA:0000575
property_value: UBPROP:0000001 "Endochondral bone that sutures with the pterosphenoid anteriorly, the sphenotic and pterotic dorsally, the parasphenoid ventrally, the basioccipital postero-ventrally, the exoccipital posteriorly, and occasionally, with the intercalar posteriorly. The dorsal edge of the prootic contributes to the hyomandibular facet. The prootic bears foramina that accommodate branches of the trigeminal and facial nerves. The prootic is a paired bone.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from basal plate cartilage (TAO:0001425)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps orbitosphenoid-prootic joint (TAO:0001794)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps prootic-exoccipital joint (TAO:0002034)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps prootic-pterosphenoid joint (TAO:0002033)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: develops_from neurocranium (UBERON:0001703)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011164 ! neurocranium bone
relationship: develops_from UBERON:0004637 ! otic capsule
relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 {source="Kardong"} ! chondrocranium
relationship: part_of UBERON:0003110 ! otic region
[Term]
id: UBERON:0004747
name: supraoccipital bone
alt_id: UBERON:0005237
def: "In humans: a bone on the dorsal side of the great foramen of the skull, usually forming a part of the occipital in the adult, but distinct in the young[DF]. In teleosts: Large shield-shaped unpaired median cartilage bone that contact the parietal anteriorly, and the exocciptial and epiotic laterally. Forms the posterodorsal most point of the cranium. The supraoccipital usually bears a crest that extends posterodorsally." [ZFA:0000595]
comment: Taxon notes (via VHOG): See Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution, Fourth Edition (2006) McGraw-Hill, p.237 Table 7.1; we follow
subset: vertebrate_core
synonym: "supraoccipital" EXACT [VHOG:0001150]
xref: MA:0001474
xref: SCTID:95947006
xref: TAO:0000595
xref: VHOG:0001150
xref: ZFA:0000595
property_value: UBPROP:0000001 "Endochondral bone that is located at the dorsal part of the occipital region of the cranium or the dorso-posterior part of the skull. It forms the dorsal margin of the foramen magnum. Commonly the supraoccipital articulates with the parietals anteriorly, the epiotics laterally, and the exoccipitals posteroventrally. The supraoccipital is an unpaired median bone.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps supraoccipital-parietal joint (TAO:0005264)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: overlaps neurocranium (TAO:0001580) CHANGED TO: part_of neurocranium (UBERON:0001703)[TAO]" xsd:string
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0011164 ! neurocranium bone
relationship: develops_from UBERON:0011162 ! supraoccipital cartilaginous condensation
relationship: part_of UBERON:0001676 {source="Kardong", gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! occipital bone
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
relationship: part_of UBERON:0005902 {source="TAO"} ! occipital region
[Term]
id: UBERON:0004748
name: autopalatine
property_value: UBPROP:0000001 "Sliver of bone that invest part of or all the posterior aspect of each antorbital plane.[AAO]" xsd:string
property_value: UBPROP:0000001 "The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms).[ZFA]" xsd:string
is_obsolete: true
[Term]
id: UBERON:0004749
name: blastodisc
def: "a small, circular, white spot (approximately 2-3 mm across) on the surface of the yellow yolk of an egg that has been laid. The nucleus of the egg is in the germinal disc." [Wikipedia:Germinal_disc]
synonym: "germinal disc" EXACT [Wikipedia:Germinal_disc]
xref: AAO:0000043
xref: BTO:0000494
xref: BTO:0001504
xref: TAO:0001175
xref: ZFA:0001175
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0004750
name: blastoderm
def: "A layer of cells formed at one pole of macrolecithal eggs such as the yolky egg of birds. The yolk prevents the division from taking place through the egg, resulting in meroblastic cleavage during the many cleavage divisions. At the animal pole (containing less yolk than the vegetal pole), the zygote divides and subdivides, forming the blastoderm, which gradually spreads around the yolk and forms the embryo. The blastoderm is composed of two layers, the epiblast and the hypoblast, which enclose the fluid-filled blastocoel cavity." [Wikipedia:Blastoderm]
xref: AAO:0000042
xref: BTO:0000126
xref: MESH:A.16.254.085.067
xref: TAO:0001176
xref: ZFA:0001176
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0004749 ! blastodisc
relationship: has_part UBERON:0000089 ! hypoblast
relationship: has_part UBERON:0002532 ! epiblast
[Term]
id: UBERON:0004751
name: hypohyal bone
synonym: "hypohyals" EXACT PLURAL [ZFA:0001381]
xref: AAO:0000958
xref: TAO:0001381
xref: ZFA:0001381
property_value: UBPROP:0000001 "Paired element that articulates anterioly with the basihyal and posteriorly with the ceratohyal hypohyals.[AAO]" xsd:string
property_value: UBPROP:0000001 "Replacement bone that is bilaterally paired and articulates with the anterior ceratohyal posteriorly.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of hyoid apparatus skeleton (AAO:0000682)[AAO]" xsd:string
is_a: UBERON:0002513 {source="TAO"} ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0011613 ! hypohyal element
relationship: develops_from UBERON:0011610 {source="TAO"} ! ceratohyal cartilage
relationship: develops_from UBERON:0011612 {source="TAO"} ! hypohyal cartilage
relationship: part_of UBERON:0010272 {source="AAO"} ! hyoid apparatus
relationship: part_of UBERON:0011153 {source="TAO"} ! ventral hyoid arch skeleton
[Term]
id: UBERON:0004752
name: palatoquadrate cartilage
def: "the dorsal component of the mandibular arch" [Wikipedia:Palatoquadrate]
synonym: "dorsal mandibular cartilage" EXACT [ZFA:0001399]
synonym: "palatoquadrate" EXACT [AAO:0000379]
synonym: "pterygoquadrate" RELATED INCONSISTENT [ZFA:0001399]
synonym: "quadrate cartilage" EXACT [ZFA:0001399]
xref: AAO:0000379
xref: TAO:0001399
xref: ZFA:0001399
property_value: UBPROP:0000001 "Column of catilage, remnant in the adult of the larval palatoquadrate cartilage, that is located lateral or antero-lateral to the auditory capsule.[AAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0011004 {source="ZFA"} ! pharyngeal arch cartilage
relationship: part_of UBERON:0003108 {source="AAO"} ! suspensorium
relationship: part_of UBERON:0011085 {source="ZFA"} ! dorsal pharyngeal arch 1
[Term]
id: UBERON:0004753
name: scapulocoracoid
def: "Skeletal element that consists of the scapula and the coracoid[VSAO, modified]." [VSAO:0005002, Wikipedia:Scapulocoracoid]
comment: AO notes: ZFA defines as precursor to scapula and coracoid. Taxon notes: Fused, ossified portions of the scapula, procoracoid, and coracoid[AAO] Cartilage in TAO. Editor notes: todo - decide whether to create separate classes for cartilage & ossified
synonym: "coraco-scapular cartilage" NARROW [ZFA:0001455]
synonym: "scapulocoracoideum" EXACT [VSAO:0005002]
xref: AAO:0000781
xref: TAO:0001455
xref: VSAO:0005002
xref: ZFA:0001455
property_value: UBPROP:0000001 "Fused, ossified portions of the scapula, procoracoid, and coracoid.[AAO]" xsd:string
property_value: UBPROP:0000001 "Pectoral fin cartilage that consists of a paired cartilaginous plate of the embryonic primary pectoral girdle and from which the scapular and coracaoid bones ossify.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of scapular area (AAO:0000935)[AAO]" xsd:string
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0007831 {source="VSAO"} ! skeleton of pectoral girdle
[Term]
id: UBERON:0004754
name: foramen ovale of heart
def: "In the fetal heart, the foramen ovale (also ostium secundum of Born or falx septi) allows blood to enter the left atrium from the right atrium. It is one of two fetal cardiac shunts, the other being the ductus arteriosus (which allows blood that still escapes to the right ventricle to bypass the pulmonary circulation). Another similar adaptation in the fetus is the ductus venosus. In most individuals, the foramen ovale (pronounced /fɒˈreɪmən oʊˈvɑːli/) closes at birth. It later forms the fossa ovalis[WP]." [Wikipedia:Foramen_ovale_(heart)]
synonym: "Bottalo's foramen" EXACT [FMA:86043]
synonym: "falx septi" EXACT [Wikipedia:Foramen_ovale_(heart)]
synonym: "foramen ovale" NARROW [galen:ForamenOvale, MA:0001873]
synonym: "foramen ovale cordis" EXACT [galen:ForamenOvaleCordis]
synonym: "ostium secundum of Born" EXACT [Wikipedia:Foramen_ovale_(heart)]
xref: EHDAA2:0004142
xref: EMAPA:18244
xref: FMA:86043
xref: galen:ForamenOvaleCordis
xref: MA:0001873
xref: ncithesaurus:Oval_Foramen
xref: SCTID:362015004
is_a: UBERON:0000464 ! anatomical space
disjoint_from: UBERON:0006678 ! foramen secundum
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004755
name: skeletal tissue
def: "Connective tissue that functions in mechanical and structural support." [VSAO:0000015]
comment: Four classes of mineralized tissues are found in vertebrates: bone, cartilage, dentine, and enamel. We think of cartilage and bone as skeletal tissues and of enamel and dentine as dental tissues, but enamel and dentine arose evolutionarily together with bone as skeletal tissues in the dermal skeleton (exoskeleton) of early vertebrates. Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. Cartilage, on the other hand, provided the basis for the second vertebrate skeletal system, the endoskeleton (Smith and Hall, 1990; Hall, 1998a,b). some invertebrate skeletal tissues have surprisingly bone-like features. Examples include chondrocytes interconnected by cell processes in cephalopod cartilages (Cole and Hall, 2004a,b), and the calcium phosphate layer in the shells of brachiopods (Rodland et al., 2003). However, neither bone nor mineralized cartilage have been found in invertebrates. Editors notes: TODO - develops_from
synonym: "mineralized tissue" NARROW []
xref: SCTID:309311006
xref: VSAO:0000015
xref: XAO:0004038
xref: ZFA:0005619
property_value: UBPROP:0000001 "A specialized form of connective tissue in which the extracellular matrix is firm, providing the tissue with resilience, and/or mineralized and that functions in mechanical and structural support.[VSAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from skeletogenic cell (CL:0007001)[VSAO]" xsd:string
is_a: UBERON:0002384 {source="VSAO"} ! connective tissue
relationship: part_of UBERON:0004765 ! skeletal element
[Term]
id: UBERON:0004756
name: dermal skeletal element
def: "dermis-derived entity that is made of skeletal tissue." []
synonym: "dermal element" EXACT [VSAO:curator]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0002067
relationship: has_part UBERON:0004755
intersection_of: UBERON:0004765 ! skeletal element
intersection_of: develops_from UBERON:0002067 ! dermis
intersection_of: has_part UBERON:0004755 ! skeletal tissue
relationship: develops_from UBERON:0002067 ! dermis
relationship: has_part UBERON:0004755 ! skeletal tissue
[Term]
id: UBERON:0004757
name: rectal gland
def: "An evagination of the terminal portion of the intestine of Elasmobranchii. Function formerly thought to be related to digestion or excretion, but now considered to secrete high concentrations of excess sodium chloride. Found also in the coelacanth Latimeria chalumnae[BTO]." [BTO:0001157]
comment: does not include FMA:15724 Rectal gland // epithelial tissue gland - concentrates & secretes excess Na & Cl in sharks. large shark liver produces copious amounts of urea, making the shark hyperosmotic to seawater, & thus a shark acts like a fresh water fish, constantly gaining water. Excess salts are concentrated by the rectal gland and secreted
subset: organ_slim
xref: BTO:0001157
xref: SCTID:80455007
is_a: UBERON:0003408 ! gland of gut
is_a: UBERON:0004758 ! salt gland
relationship: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0004758
name: salt gland
def: "an organ for excreting excess salts. It is found in elasmobranchs, seabirds, and some reptiles. In sharks, salt glands are found in the rectum, but in birds and reptiles, they are found in or on the skull, in the area of the eyes, nostrils or mouth. In crocodiles, the salt is excreted through the tongue. Such glands work by active transport via sodium-potassium pump that moves salt from the blood into the gland, where it can be excreted as a concentrated solution. Salt glands function to keep salt balance, and allow marine vertebrates to drink seawater[WP]." [Wikipedia:Salt_gland]
subset: functional_classification
subset: organ_slim
xref: BTO:0001204
xref: GAID:1235
xref: MESH:A.13.811
is_a: UBERON:0002530 ! gland
[Term]
id: UBERON:0004759
name: salt gland of cranial region
def: "A salt gland located in the cranium or cranial region." [OBOL:automatic]
subset: organ_slim
is_a: UBERON:0004758 ! salt gland
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0004760
name: gland of anal canal
def: "A gland that is part of an anal canal [Obol]." [OBOL:automatic, Wikipedia:Anal_gland]
subset: organ_slim
synonym: "anal gland" RELATED []
synonym: "anal sac" RELATED SENSU [Wikipedia:Anal_gland]
synonym: "gland of anal canal" EXACT [OBOL:automatic]
synonym: "gland of anus" RELATED []
synonym: "rectal gland" RELATED []
xref: EMAPA:27221
xref: EMAPA:27233
xref: EMAPA:27543
xref: FMA:15720
xref: FMA:15724
xref: ncithesaurus:Anal_Gland
xref: SCTID:245448005
is_a: UBERON:0003408 ! gland of gut
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000159
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000159 ! anal canal
relationship: part_of UBERON:0000159 ! anal canal
[Term]
id: UBERON:0004761
name: cartilaginous neurocranium
def: "the primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]." [Wikipedia:Chondrocranium]
comment: note that in contrast to chondrocranium, this structure is entirely cartiliginous. In Chondricthyes this is the same as the neurocranium. FMA:76621 is an undefined fetal structure, so we assume the correct placement is here. Note that this is distinct from MA:0000317 which is the uberon:neurocranium (the part of the cranium that encloses the brain)
synonym: "cartilaginous chondocranium" EXACT []
synonym: "cartilaginous skull" RELATED []
synonym: "cartiligionous skeletal structure of skull" EXACT []
synonym: "chondocranium" RELATED [Wikipedia:Chondrocranium]
synonym: "embryonic chondocranium" RELATED []
synonym: "neurocranium" RELATED SENSU []
xref: AAO:0000094
xref: AAO:0010153
xref: EHDAA:6031
xref: FMA:76621
xref: ncithesaurus:Chondrocranium
xref: SCTID:155540009
xref: XAO:0003059
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0009617 {source="PMC1571569"} ! head paraxial mesoderm
relationship: has_part UBERON:0002418 ! cartilage tissue
[Term]
id: UBERON:0004763
name: endochondral bone tissue
def: "Replacement bone tissue that forms within cartilage[TAO]. Endochondral ossification is the formation of bone by the replacement of cartilage tissue with mineralized bone[GO]. cartilage is present during endochondral ossification. It is also an essential process during the rudimentary formation of long bones, the growth of the length of long bones, and the natural healing of bone fractures[WP]." [GO:0001958, Wikipedia:Endochondral_ossification]
comment: note the distinction between endochondral bone and endochondral bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type
subset: uberon_slim
subset: vertebrate_core
synonym: "replacement bone" BROAD [ZFA:0001628]
xref: AAO:0010768
xref: MA:0002836
xref: TAO:0001637
xref: ZFA:0001628
property_value: UBPROP:0000001 "Bone that forms as a replacement of another structural tissue.[TAO]" xsd:string
is_a: UBERON:0002481 ! bone tissue
is_a: UBERON:0010522 {source="ZFA"} ! replacement element
disjoint_from: UBERON:0004764 ! intramembranous bone tissue
relationship: developmentally_replaces UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0002513 ! endochondral bone
[Term]
id: UBERON:0004764
name: intramembranous bone tissue
def: "Bone tissue that forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, Wikipedia:Intramembranous_ossification]
comment: note the distinction between intramembranous bone and intramembranous bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type.
xref: MA:0002837
is_a: UBERON:0002481 ! bone tissue
relationship: develops_from UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0002514 ! intramembranous bone
[Term]
id: UBERON:0004765
name: skeletal element
def: "Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm]
comment: TODO - add more general class for other kinds of mineralized tissue
subset: organ_slim
subset: uberon_slim
xref: AAO:0011129
xref: galen:SkeletalStructure
xref: TAO:0001890
xref: VSAO:0000128
xref: XAO:0004012
xref: ZFA:0005494
property_value: UBPROP:0000001 "Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.[VSAO]" xsd:string
property_value: UBPROP:0000001 "Organ entity that may have different tissue compositions at different stages and is typically involved in mechanical support.[TAO]" xsd:string
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001434 {source="VSAO"} ! skeletal system
[Term]
id: UBERON:0004766
name: cranial bone
def: "A bone that is part of a cranium." [UBERON:automatic]
comment: Note that here cranium = skull - mandible
synonym: "cranium bone" EXACT [UBERON:automatic]
xref: SCTID:181792001
is_a: UBERON:0003457 ! head bone
relationship: part_of UBERON:0003128
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0003128 ! cranium
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0004767
name: vomerine tooth
def: "A tooth that is on the vomer." [http://www.encyclo.co.uk/define/Vomerine%20teeth]
xref: AAO:0000635
xref: TAO:0001631
property_value: UBPROP:0000001 "Tooth that is attached to the vomer.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: OBO_REL:part_of vomer (TAO:0000308) CHANGED TO: attaches_to vomer (UBERON:0002396)[TAO]" xsd:string
is_a: UBERON:0001091 ! calcareous tooth
relationship: attaches_to UBERON:0002396
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: attaches_to UBERON:0002396 ! vomer
relationship: attaches_to UBERON:0002396 ! vomer
[Term]
id: UBERON:0004768
name: bone of lower jaw
def: "Any bone that is part of the lower jaw skeleton. This includes (when present): the dentary/mandible, the articular, the splenial, the supraangular" [UBERON:cjm]
comment: Editor notes: Do not manually classify under here - bones are automatically classified
subset: grouping_class
synonym: "lower jaw bone" EXACT []
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001710
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001710 ! lower jaw region
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0001710 ! lower jaw region
relationship: part_of UBERON:0003278 ! skeleton of lower jaw
[Term]
id: UBERON:0004769
name: diaphysis
def: "Subdivision of long bone which forms the part of the bone between the two epiphyses; together with other the subdivisions of long bone, it constitutes the long bone. Examples: diaphysis of humerus, diaphysis of femur[FMA]. the main or mid section (shaft) of a long bone. It is made up of cortical bone and usually contains bone marrow and adipose tissue (fat)." [Wikipedia:Diaphysis]
subset: uberon_slim
synonym: "body of long bone" EXACT []
synonym: "long bone diaphysis" EXACT []
synonym: "shaft of long bone" EXACT []
xref: FMA:24013
xref: GAID:189
xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Illu_long_bone.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Illu_long_bone.jpg/200px-Illu_long_bone.jpg
xref: MESH:A.02.835.232.169
xref: SCTID:361729006
is_a: UBERON:0005055 ! zone of long bone
[Term]
id: UBERON:0004770
name: articular system
def: "Anatomical system that consists of all the joints of the body." [VSAO:0000181]
synonym: "joint system" EXACT [FMA:23878]
synonym: "set of all joints" RELATED []
synonym: "set of all joints of body" EXACT [FMA:23878]
xref: FMA:23878
xref: MA:0003007
xref: SCTID:361827000
xref: VSAO:0000181
is_a: UBERON:0000467 {source="VSAO"} ! anatomical system
relationship: has_part UBERON:0000982 ! skeletal joint
relationship: part_of UBERON:0001434 {source="FMA"} ! skeletal system
[Term]
id: UBERON:0004771
name: posterior nasal aperture
def: "Opening/conduit between the nasal cavity and the nasopharynx[AAO] The choanae are separated by the vomer[WP]." [AAO:0000093, Wikipedia:Posterior_nasal_apertures]
comment: Fish don't have choanae, instead they have two pairs of external nostrils[WP] In addition to tetrapods, the lungfish has internal nostrils too. TODO: check part_of vs adjacent_to nasal cavity. In tetrapods the exhalant nostril (choana) empties into the buccal cavity.
synonym: "choana" BROAD [Wikipedia:Choane, XAO:0000277]
synonym: "internal naris" BROAD [MA:0001323]
synonym: "nasopharyngeal naris" RELATED []
xref: AAO:0000093
xref: EHDAA2:0000242
xref: EHDAA:7842
xref: FMA:53143
xref: http://upload.wikimedia.org/wikipedia/commons/8/87/Gray855.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Gray855.png/200px-Gray855.png
xref: MA:0001323
xref: SCTID:244507001
xref: VHOG:0000545
xref: XAO:0000277
property_value: UBPROP:0000001 "Opening between the nasal cavity and the nasopharynx.[AAO]" xsd:string
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
is_a: UBERON:0010425 ! internal naris
relationship: adjacent_to UBERON:0001728
relationship: part_of UBERON:0001707
intersection_of: UBERON:0000003 ! naris
intersection_of: adjacent_to UBERON:0001728 ! nasopharynx
intersection_of: part_of UBERON:0001707 ! nasal cavity
relationship: adjacent_to UBERON:0001728 ! nasopharynx
relationship: part_of UBERON:0001707 ! nasal cavity
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0004772
name: eyelid tarsus
def: "The tarsi (tarsal plates) are two comparatively thick, elongated plates of dense connective tissue, about 2.5 cm. in length; one is found in each eyelid, and contributes to its form and support. They directly abut the lid margins." [Wikipedia:Tarsus_(eyelids)]
comment: Taxon notes: In most taxa (birds, mammals, lizards), the tarsal plate is described as a dense, fibrous connective tissue, possibly including cartilage, present within one or both of the upper and lower eyelids (Gau- thier et al., 1988; Rieppel, 2000). In humans, the tarsal plate of the upper eyelid is composed of collagens types I, III, and V, as well as glycosaminogly- cans (chondroitin sulphate 4 and 6), aggrecan, and cartilage oligomeric matrix proteins but lacks collagen type II as well as chondrocytes (Milz et al., 2005). Thus, for humans, the upper tarsal plate represents neither a truly fibrous nor a truly cartilagi- nous element but instead one that is composed of a unique transitional tissue (Milz et al., 2005). In many birds, lizards, and Sphenodon (the tuatara), the upper eyelid has lim- ited mobility and a putative tarsal plate is instead found within the lower eyelid (Underwood, 1970; Gau- thier et al., 1988). [PMID:16496288]
subset: organ_slim
synonym: "tarsal plate" EXACT [FMA:59086]
synonym: "tarsal plate" EXACT []
synonym: "tarsal plate of eyelid" EXACT [FMA:59086]
synonym: "tarsus palpebralis" EXACT [PMID:16496288]
xref: FMA:59086
xref: MA:0000270
xref: ncithesaurus:Tarsal_Plate
xref: SCTID:362529005
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0000094 ! membrane organ
is_a: UBERON:0003581 ! eyelid connective tissue
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0004773
name: superior eyelid tarsus
def: "An eyelid tarsus that is part of a upper eyelid [Obol]." [OBOL:automatic]
synonym: "superior tarsal plate" EXACT [FMA:59087]
synonym: "superior tarsus" EXACT [FMA:59087]
synonym: "superior tarsus of eyelid" EXACT []
synonym: "tarsal plate of upper eyelid" EXACT [FMA:59087]
synonym: "tarsus of upper eyelid" EXACT []
synonym: "tarsus superior" EXACT [FMA:59087, FMA:TA]
xref: FMA:59087
xref: MA:0001260
xref: SCTID:368773004
is_a: UBERON:0004772 ! eyelid tarsus
relationship: part_of UBERON:0001712
intersection_of: UBERON:0004772 ! eyelid tarsus
intersection_of: part_of UBERON:0001712 ! upper eyelid
relationship: part_of UBERON:0001712 ! upper eyelid
[Term]
id: UBERON:0004774
name: inferior eyelid tarsus
def: "An eyelid tarsus that is part of a lower eyelid [Obol]." [OBOL:automatic]
synonym: "inferior tarsal plate" EXACT [FMA:59088]
synonym: "inferior tarsus" EXACT [FMA:59088]
synonym: "inferior tarsus of eyelid" EXACT []
synonym: "tarsal plate of lower eyelid" EXACT [FMA:59088]
synonym: "tarsus inferior" EXACT [FMA:59088, FMA:TA]
synonym: "tarsus of lower eyelid" EXACT []
xref: FMA:59088
xref: MA:0001257
xref: SCTID:368774005
is_a: UBERON:0004772 ! eyelid tarsus
relationship: part_of UBERON:0001713
intersection_of: UBERON:0004772 ! eyelid tarsus
intersection_of: part_of UBERON:0001713 ! lower eyelid
relationship: part_of UBERON:0001713 ! lower eyelid
[Term]
id: UBERON:0004775
name: outer renal medulla vasa recta
def: "A vasa recta that is part of a outer medulla of kidney [Obol]." [OBOL:automatic]
synonym: "kidney outer medulla vasa recta" EXACT [MP:0011330]
synonym: "kidney outer renal medulla vasa recta" EXACT [MP:0011330]
synonym: "outer medulla of kidney vasa recta" EXACT [OBOL:automatic]
synonym: "outer zone of medulla of kidney vasa recta" EXACT [OBOL:automatic]
synonym: "outer zone of renal medulla vasa recta" EXACT [OBOL:automatic]
synonym: "vasa recta of outer medulla of kidney" EXACT [OBOL:automatic]
synonym: "vasa recta of outer renal medulla" EXACT [OBOL:automatic]
synonym: "vasa recta of outer zone of medulla of kidney" EXACT [OBOL:automatic]
synonym: "vasa recta of outer zone of renal medulla" EXACT [OBOL:automatic]
xref: MA:0002597
is_a: UBERON:0004726 ! vasa recta
relationship: part_of UBERON:0001293
intersection_of: UBERON:0004726 ! vasa recta
intersection_of: part_of UBERON:0001293 ! outer medulla of kidney
relationship: part_of UBERON:0001293 ! outer medulla of kidney
[Term]
id: UBERON:0004776
name: inner renal medulla vasa recta
def: "A vasa recta that is part of a inner medulla of kidney [Obol]." [OBOL:automatic]
synonym: "inner medulla of kidney vasa recta" EXACT [OBOL:automatic]
synonym: "inner zone of medulla of kidney vasa recta" EXACT [OBOL:automatic]
synonym: "inner zone of renal medulla vasa recta" EXACT [OBOL:automatic]
synonym: "set of inner region of renal pyramids vasa recta" EXACT [OBOL:automatic]
synonym: "vasa recta of inner medulla of kidney" EXACT [OBOL:automatic]
synonym: "vasa recta of inner renal medulla" EXACT [OBOL:automatic]
synonym: "vasa recta of inner zone of medulla of kidney" EXACT [OBOL:automatic]
synonym: "vasa recta of inner zone of renal medulla" EXACT [OBOL:automatic]
synonym: "vasa recta of set of inner region of renal pyramids" EXACT [OBOL:automatic]
xref: MA:0002596
is_a: UBERON:0004726 ! vasa recta
relationship: part_of UBERON:0001294
intersection_of: UBERON:0004726 ! vasa recta
intersection_of: part_of UBERON:0001294 ! inner medulla of kidney
relationship: part_of UBERON:0001294 ! inner medulla of kidney
[Term]
id: UBERON:0004777
name: respiratory system submucosa
def: "A submucosa that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "submucosa of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001822
is_a: UBERON:0000009 ! submucosa
relationship: part_of UBERON:0001004
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0003570 ! respiratory system connective tissue
[Term]
id: UBERON:0004778
name: larynx submucosa
def: "A submucosa that is part of a larynx [Obol]." [OBOL:automatic]
synonym: "submucosa of larynx" EXACT [OBOL:automatic]
xref: MA:0002728
xref: SCTID:361941005
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004777 ! respiratory system submucosa
relationship: part_of UBERON:0001737
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0004779
name: respiratory system lamina propria
def: "A lamina propria that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius lamina propria" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of respiratory system" EXACT [OBOL:automatic]
synonym: "lamina propria of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lamina propria of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system lamina propria mucosa" EXACT [OBOL:automatic]
xref: MA:0001821
is_a: UBERON:0000030 ! lamina propria
relationship: part_of UBERON:0001004
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0003570 ! respiratory system connective tissue
[Term]
id: UBERON:0004780
name: gastrointestinal system lamina propria
xref: MA:0001899
xref: ncithesaurus:Gastrointestinal_Tract_Lamina_Propria
is_a: UBERON:0000030 ! lamina propria
relationship: part_of UBERON:0005409
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0005409 ! gastrointestinal system
relationship: part_of UBERON:0005409 ! gastrointestinal system
[Term]
id: UBERON:0004781
name: gall bladder lamina propria
def: "A lamina propria that is part of a gallbladder [Obol]." [OBOL:automatic]
synonym: "biliary lamina propria" RELATED [MA:0001633]
synonym: "gall bladder lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "gallbladder lamina propria" EXACT [OBOL:automatic]
synonym: "gallbladder lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of gall bladder" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of gallbladder" EXACT [OBOL:automatic]
synonym: "lamina propria of gall bladder" EXACT [OBOL:automatic]
synonym: "lamina propria of gallbladder" EXACT [OBOL:automatic]
xref: MA:0001633
xref: ncithesaurus:Gallbladder_Lamina_Propria
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002110
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0002110 ! gallbladder
relationship: part_of UBERON:0002110 ! gallbladder
[Term]
id: UBERON:0004782
name: gastrointestinal system serosa
def: "A serous membrane that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system serosa" EXACT [OBOL:automatic]
synonym: "digestive system serous membrane" EXACT [OBOL:automatic]
synonym: "gastrointestinal system serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of digestive system" EXACT [OBOL:automatic]
synonym: "serosa of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "serous membrane of digestive system" EXACT [OBOL:automatic]
synonym: "serous membrane of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001522
is_a: UBERON:0000042 ! serous membrane
relationship: part_of UBERON:0005409
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0005409 ! gastrointestinal system
relationship: part_of UBERON:0005409 ! gastrointestinal system
[Term]
id: UBERON:0004783
name: gall bladder serosa
def: "A serous membrane that is part of a gallbladder [Obol]." [OBOL:automatic]
synonym: "biliary serosa" RELATED [MA:0001634]
synonym: "gall bladder serous membrane" EXACT [OBOL:automatic]
synonym: "gallbladder serosa" EXACT [OBOL:automatic]
synonym: "gallbladder serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of gall bladder" EXACT [OBOL:automatic]
synonym: "serosa of gallbladder" EXACT [OBOL:automatic]
synonym: "serous coat of gallbladder" EXACT [FMA:14659]
synonym: "serous membrane of gall bladder" EXACT [OBOL:automatic]
synonym: "serous membrane of gallbladder" EXACT [OBOL:automatic]
synonym: "tunica serosa (vesica biliaris)" EXACT [FMA:14659]
synonym: "tunica serosa vesicae biliaris" EXACT [FMA:14659, FMA:TA]
xref: FMA:14659
xref: MA:0001634
xref: SCTID:362197006
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
relationship: part_of UBERON:0002110
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0002110 ! gallbladder
relationship: part_of UBERON:0002110 ! gallbladder
[Term]
id: UBERON:0004784
name: heart ventricle wall
def: "An anatomical wall that is part of a cardiac ventricle [Obol]." [OBOL:automatic]
synonym: "anatomical wall of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "anatomical wall of heart ventricle" EXACT [OBOL:automatic]
synonym: "anatomical wall of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "anatomical wall of ventricle of heart" EXACT [OBOL:automatic]
synonym: "cardiac ventricle anatomical wall" EXACT [OBOL:automatic]
synonym: "cardiac ventricle wall" EXACT [OBOL:automatic]
synonym: "heart ventricle anatomical wall" EXACT [OBOL:automatic]
synonym: "lower chamber of heart anatomical wall" EXACT [OBOL:automatic]
synonym: "lower chamber of heart wall" EXACT [OBOL:automatic]
synonym: "ventricle of heart anatomical wall" EXACT [OBOL:automatic]
synonym: "ventricle of heart wall" EXACT [OBOL:automatic]
synonym: "ventricular wall" EXACT [FMA:13884]
synonym: "wall of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "wall of heart ventricle" EXACT [OBOL:automatic]
synonym: "wall of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "wall of ventricle" RELATED [MA:0002791]
synonym: "wall of ventricle of heart" EXACT [OBOL:automatic]
xref: FMA:13884
xref: MA:0002791
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002082
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0004785
name: respiratory system mucosa
def: "A mucosa that is part of a respiratory system [Obol]." [OBOL:automatic]
comment: TODO - split respiratory tract mucosa from respiratory system mucosa
synonym: "apparatus respiratorius mucosa" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius mucosa of organ" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius mucous membrane" EXACT [OBOL:automatic]
synonym: "mucosa of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "mucosa of organ of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "mucosa of organ of respiratory system" EXACT [OBOL:automatic]
synonym: "mucosa of respiratory system" EXACT [OBOL:automatic]
synonym: "mucous membrane of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "mucous membrane of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory mucosa" RELATED [BTO:0000973]
synonym: "respiratory system mucosa of organ" EXACT [OBOL:automatic]
synonym: "respiratory system mucous membrane" EXACT [OBOL:automatic]
xref: BTO:0000973
xref: EMAPA:18334
xref: GAID:304
xref: MA:0001827
xref: MESH:A.04.760
is_a: UBERON:0000344 ! mucosa
relationship: part_of UBERON:0001004
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004786
name: gastrointestinal system mucosa
comment: The gut mucosa of amphioxus has insulin-secreting cells. PMID:16417468
synonym: "digestive tract mucosa" EXACT [UBERON:cjm]
synonym: "gut mucosa" EXACT [BTO:0000546]
synonym: "gut mucuous membrane" EXACT [UBERON:cjm]
synonym: "mucosa of gut" EXACT [UBERON:cjm]
xref: BTO:0000546
xref: MA:0001521
xref: SCTID:410433007
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0005409
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0005409 ! gastrointestinal system
relationship: adjacent_to UBERON:0006909 {source="BTO-modified"} ! lumen of gut
relationship: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0005409 ! gastrointestinal system
[Term]
id: UBERON:0004787
name: urethra urothelium
def: "A urothelium that is part of a urethra [Obol]." [OBOL:automatic]
synonym: "urethra Uroepithelium" EXACT [OBOL:automatic]
synonym: "uroepithelium of urethra" EXACT [OBOL:automatic]
synonym: "urothelium of urethra" EXACT [OBOL:automatic]
xref: MA:0001687
xref: ncithesaurus:Urethra_Transitional_Cell_Epithelium
is_a: UBERON:0000365 ! urothelium
is_a: UBERON:0002325 ! epithelium of urethra
relationship: part_of UBERON:0000057
intersection_of: UBERON:0000365 ! urothelium
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0004788
name: kidney pelvis urothelium
def: "A urothelium that is part of a renal pelvis [Obol]." [OBOL:automatic]
synonym: "kidney pelvis transitional epithelium" EXACT [OBOL:automatic]
synonym: "kidney pelvis Uroepithelium" EXACT [OBOL:automatic]
synonym: "pelvis of ureter Uroepithelium" EXACT [OBOL:automatic]
synonym: "pelvis of ureter urothelium" EXACT [OBOL:automatic]
synonym: "renal pelvis transitional epithelium" EXACT [OBOL:automatic]
synonym: "renal pelvis Uroepithelium" EXACT [OBOL:automatic]
synonym: "renal pelvis urothelium" EXACT [OBOL:automatic]
synonym: "transitional epithelium of kidney pelvis" EXACT [OBOL:automatic]
synonym: "transitional epithelium of renal pelvis" EXACT [FMA:263264]
synonym: "uroepithelium of kidney pelvis" EXACT [OBOL:automatic]
synonym: "uroepithelium of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "uroepithelium of renal pelvis" EXACT [OBOL:automatic]
synonym: "urothelium of kidney pelvis" EXACT [OBOL:automatic]
synonym: "urothelium of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "urothelium of renal pelvis" EXACT [OBOL:automatic]
xref: FMA:263264
xref: MA:0002632
xref: ncithesaurus:Renal_Pelvis_Urothelium
is_a: UBERON:0001254 ! urothelium of ureter
is_a: UBERON:0004819 ! kidney epithelium
relationship: part_of UBERON:0001224
intersection_of: UBERON:0000365 ! urothelium
intersection_of: part_of UBERON:0001224 ! renal pelvis
relationship: part_of UBERON:0001224 ! renal pelvis
[Term]
id: UBERON:0004789
name: larynx mucous gland
def: "A mucous gland that is part of a larynx [Obol]." [OBOL:automatic]
synonym: "mucous gland of larynx" EXACT [OBOL:automatic]
xref: MA:0001767
is_a: UBERON:0000414 ! mucous gland
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001737
intersection_of: UBERON:0000414 ! mucous gland
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001824 ! mucosa of larynx
[Term]
id: UBERON:0004790
name: skin mucous gland
comment: Editor notes; See comments for 'skin mucus'
subset: organ_slim
synonym: "mucous gland of entire skin" EXACT [OBOL:automatic]
synonym: "mucous gland of skin of body" EXACT [OBOL:automatic]
synonym: "skin mucus gland" EXACT [OBOL:automatic]
synonym: "skin of body mucous gland" EXACT [OBOL:automatic]
xref: MA:0000148
is_a: UBERON:0000414 ! mucous gland
is_a: UBERON:0002419 ! skin gland
relationship: part_of UBERON:0002097
intersection_of: UBERON:0000414 ! mucous gland
intersection_of: part_of UBERON:0002097 ! skin of body
relationship: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0004791
name: thymus trabecula
def: "A trabecula that is part of a thymus [Obol]." [OBOL:automatic]
synonym: "thymic trabecula" EXACT [OBOL:automatic]
synonym: "thymus gland trabecula" EXACT [OBOL:automatic]
synonym: "trabecula of thymus" EXACT [OBOL:automatic]
synonym: "trabecula of thymus gland" EXACT [OBOL:automatic]
xref: MA:0002674
xref: ncithesaurus:Thymic_Trabecula
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000440 ! trabecula
relationship: part_of UBERON:0002370
intersection_of: UBERON:0000440 ! trabecula
intersection_of: part_of UBERON:0002370 ! thymus
relationship: part_of UBERON:0002370 ! thymus
relationship: part_of UBERON:0002370 {source="MA"} ! thymus
[Term]
id: UBERON:0004792
name: secretion of endocrine pancreas
def: "A secretion that is part of a endocrine pancreas [Obol]." [OBOL:automatic]
synonym: "endocrine pancreas secretion" EXACT [OBOL:automatic]
synonym: "pancreatic endocrine secretion" EXACT [ncithesaurus:Pancreatic_Endocrine_Secretion]
synonym: "pars endocrina pancreatis secretion" EXACT [OBOL:automatic]
synonym: "secretion of pars endocrina pancreatis" EXACT [OBOL:automatic]
xref: MA:0002517
xref: ncithesaurus:Pancreatic_Endocrine_Secretion
is_a: UBERON:0004795 ! pancreas secretion
relationship: part_of UBERON:0000016
intersection_of: UBERON:0000456 ! bodily secretion
intersection_of: part_of UBERON:0000016 ! endocrine pancreas
relationship: part_of UBERON:0000016 ! endocrine pancreas
[Term]
id: UBERON:0004793
name: secretion of exocrine pancreas
def: "A secretion that is part of a exocrine pancreas [Obol]." [OBOL:automatic]
synonym: "exocrine pancreas secretion" EXACT [OBOL:automatic]
synonym: "pancreatic exocrine secretion" EXACT [ncithesaurus:Pancreatic_Exocrine_Secretion]
synonym: "pars exocrina pancreatis secretion" EXACT [OBOL:automatic]
synonym: "secretion of pars exocrina pancreatis" EXACT [OBOL:automatic]
xref: MA:0002518
xref: ncithesaurus:Pancreatic_Exocrine_Secretion
is_a: UBERON:0004795 ! pancreas secretion
relationship: part_of UBERON:0000017
intersection_of: UBERON:0000456 ! bodily secretion
intersection_of: part_of UBERON:0000017 ! exocrine pancreas
relationship: part_of UBERON:0000017 ! exocrine pancreas
[Term]
id: UBERON:0004794
name: esophagus secretion
def: "A secretion that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophageal secretion" EXACT [FMA:79662]
synonym: "gullet secretion" EXACT [OBOL:automatic]
synonym: "oesophagus secretion" EXACT [OBOL:automatic]
synonym: "secretion of esophagus" EXACT [OBOL:automatic]
synonym: "secretion of gullet" EXACT [OBOL:automatic]
synonym: "secretion of oesophagus" EXACT [OBOL:automatic]
xref: FMA:79662
xref: MA:0002514
xref: ncithesaurus:Esophagus_Secretion
is_a: UBERON:0000456 ! bodily secretion
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000456 ! bodily secretion
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0004795
name: pancreas secretion
def: "A secretion that is part of a pancreas [Obol]." [OBOL:automatic]
synonym: "pancreatic secretion" EXACT [OBOL:automatic]
synonym: "secretion of pancreas" EXACT [OBOL:automatic]
xref: MA:0002516
xref: ncithesaurus:Pancreatic_Secretion
is_a: UBERON:0000456 ! bodily secretion
relationship: part_of UBERON:0001264
intersection_of: UBERON:0000456 ! bodily secretion
intersection_of: part_of UBERON:0001264 ! pancreas
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0004796
name: prostate gland secretion
alt_id: UBERON:0010142
def: "A secretion of the prostate this is slightly alkaline fluid, milky or white in appearance. Usually constitutes 20–30% of the volume of the semen along with spermatozoa and seminal vesicle fluid" [Wikipedia:Prostate#Secretions]
comment: Taxon notes: Prostatic secretions vary among species. They are generally composed of simple sugars and are often slightly alkaline.
synonym: "prostate secretion" EXACT [OBOL:automatic]
synonym: "prostatic fluid" EXACT [FMA:66884]
synonym: "secretion of prostate" EXACT [OBOL:automatic]
synonym: "secretion of prostate gland" EXACT [OBOL:automatic]
xref: FMA:66884
xref: MA:0002525
xref: ncithesaurus:Prostate_Gland_Secretion
is_a: UBERON:0006530 {source="FMA"} ! seminal fluid
relationship: secreted_by UBERON:0002367
intersection_of: UBERON:0000456 ! bodily secretion
intersection_of: secreted_by UBERON:0002367 ! prostate gland
relationship: secreted_by UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0004797
name: blood vessel layer
xref: MA:0002854
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0001981
intersection_of: UBERON:0004923 ! organ component layer
intersection_of: part_of UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0004798
name: respiratory system basal lamina
def: "A basal lamina that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius basal lamina" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius basal lamina of connective tissue" EXACT [OBOL:automatic]
synonym: "basal lamina of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "basal lamina of connective tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "basal lamina of connective tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "basal lamina of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system basal lamina of connective tissue" EXACT [OBOL:automatic]
xref: MA:0001816
is_a: UBERON:0000482 ! basal lamina
relationship: part_of UBERON:0001004
intersection_of: UBERON:0000482 ! basal lamina
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004799
name: trachea basal lamina
def: "A basal lamina that is part of a respiratory airway [Obol]." [OBOL:automatic]
synonym: "basal lamina of connective tissue of respiratory airway" EXACT [OBOL:automatic]
xref: MA:0001855
xref: ncithesaurus:Trachea_Basal_Lamina
is_a: UBERON:0004798 ! respiratory system basal lamina
relationship: part_of UBERON:0001005
intersection_of: UBERON:0000482 ! basal lamina
intersection_of: part_of UBERON:0001005 ! respiratory airway
relationship: part_of UBERON:0001005 ! respiratory airway
[Term]
id: UBERON:0004800
name: bronchus basal lamina
def: "A basal lamina that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "basal lamina of bronchi" EXACT [OBOL:automatic]
synonym: "basal lamina of bronchial trunk" EXACT [OBOL:automatic]
synonym: "basal lamina of bronchus" EXACT [OBOL:automatic]
synonym: "basal lamina of connective tissue of bronchi" EXACT [OBOL:automatic]
synonym: "basal lamina of connective tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "basal lamina of connective tissue of bronchus" EXACT [OBOL:automatic]
synonym: "bronchi basal lamina" EXACT [OBOL:automatic]
synonym: "bronchi basal lamina of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk basal lamina" EXACT [OBOL:automatic]
synonym: "bronchial trunk basal lamina of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchus basal lamina of connective tissue" EXACT [OBOL:automatic]
xref: MA:0001833
xref: ncithesaurus:Bronchus_Basal_Lamina
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004798 ! respiratory system basal lamina
relationship: part_of UBERON:0002185
intersection_of: UBERON:0000482 ! basal lamina
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0004801
name: cervix epithelium
def: "An epithelium that is part of a uterine cervix [Obol]." [OBOL:automatic]
synonym: "cervical canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "cervical canal epithelium" EXACT [OBOL:automatic]
synonym: "cervical canal of uterus epithelial tissue" EXACT [OBOL:automatic]
synonym: "cervical canal of uterus epithelium" EXACT [OBOL:automatic]
synonym: "cervix epithelial tissue" EXACT [OBOL:automatic]
synonym: "cervix of uterus epithelial tissue" EXACT [OBOL:automatic]
synonym: "cervix of uterus epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cervical canal" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cervical canal of uterus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cervix" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cervix of uterus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of neck of uterus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of uterine cervix" EXACT [OBOL:automatic]
synonym: "epithelium of cervical canal" EXACT [OBOL:automatic]
synonym: "epithelium of cervical canal of uterus" EXACT [OBOL:automatic]
synonym: "epithelium of cervix" EXACT [OBOL:automatic]
synonym: "epithelium of cervix of uterus" EXACT [OBOL:automatic]
synonym: "epithelium of neck of uterus" EXACT [OBOL:automatic]
synonym: "epithelium of uterine cervix" EXACT [OBOL:automatic]
synonym: "neck of uterus epithelial tissue" EXACT [OBOL:automatic]
synonym: "neck of uterus epithelium" EXACT [OBOL:automatic]
synonym: "uterine cervix epithelial tissue" EXACT [OBOL:automatic]
synonym: "uterine cervix epithelium" EXACT [OBOL:automatic]
xref: BTO:0000241
xref: EFO:0001913
xref: MA:0001724
xref: ncithesaurus:Cervix_Epithelium
is_a: UBERON:0006955 ! uterine epithelium
relationship: part_of UBERON:0000002
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000002 ! uterine cervix
relationship: part_of UBERON:0000002 ! uterine cervix
[Term]
id: UBERON:0004802
name: respiratory tract epithelium
def: "An epithelium that is part of a respiratory tract [Obol]." [OBOL:automatic]
synonym: "airway epithelium" RELATED [BTO:0000419]
synonym: "epithelial tissue of respiratory tract" EXACT [OBOL:automatic]
synonym: "epithelium of respiratory tract" EXACT [OBOL:automatic]
synonym: "respiratory epithelium" RELATED [BTO:0000419]
synonym: "respiratory tract epithelial tissue" EXACT [OBOL:automatic]
xref: BTO:0000419
xref: MA:0001480
xref: SCTID:321764001
xref: VHOG:0000981
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0000065
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000065 ! respiratory tract
relationship: part_of UBERON:0000065 ! respiratory tract
relationship: part_of UBERON:0000072 ! segment of respiratory tract
[Term]
id: UBERON:0004803
name: penis epithelium
def: "An epithelium that is part of a penis [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of penis" EXACT [OBOL:automatic]
synonym: "epithelium of penis" EXACT [OBOL:automatic]
synonym: "penis epithelial tissue" EXACT [OBOL:automatic]
xref: EHDAA2:0004039
xref: MA:0001742
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000989
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000989 ! penis
relationship: part_of UBERON:0000989 ! penis
[Term]
id: UBERON:0004804
name: oviduct epithelium
def: "An epithelium that is part of a oviduct [Obol]." [OBOL:automatic]
comment: in FMA, epithelium of uterine tube is a subclass of ciliated columnar epithelium. MA introduces subtypes: ciliated columnar and cuboidal. We map the FMA type according to its relationships, not its label
synonym: "epithelial tissue of oviduct" EXACT [OBOL:automatic]
synonym: "epithelium of fallopian tube" EXACT [OBOL:automatic]
synonym: "epithelium of oviduct" EXACT [OBOL:automatic]
synonym: "epithelium of uterine tube" EXACT [FMA:62016]
synonym: "oviduct epithelial tissue" EXACT [OBOL:automatic]
xref: BTO:0002402
xref: EMAPA:29043
xref: MA:0001718
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000993
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000993 ! oviduct
relationship: part_of UBERON:0000993 ! oviduct
relationship: part_of UBERON:0003889 ! fallopian tube
[Term]
id: UBERON:0004805
name: seminal vesicle epithelium
def: "An epithelium that is part of a seminal vesicle [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of seminal gland" EXACT [OBOL:automatic]
synonym: "epithelial tissue of seminal vesicle" EXACT [OBOL:automatic]
synonym: "epithelium of seminal gland" EXACT [OBOL:automatic]
synonym: "epithelium of seminal vesicle" EXACT [OBOL:automatic]
synonym: "seminal gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "seminal gland epithelium" EXACT [OBOL:automatic]
synonym: "seminal vesicle epithelial tissue" EXACT [OBOL:automatic]
xref: EMAPA:29771
xref: MA:0001745
xref: ncithesaurus:Seminal_Vesicle_Epithelium
is_a: UBERON:0004910 ! epithelium of male gonad
relationship: part_of UBERON:0000998
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000998 ! seminal vesicle
relationship: part_of UBERON:0000998 ! seminal vesicle
[Term]
id: UBERON:0004806
name: vas deferens epithelium
def: "An epithelium that is part of a vas deferens [Obol]." [OBOL:automatic]
synonym: "deferent duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "deferent duct epithelium" EXACT [OBOL:automatic]
synonym: "ductus deferens epithelial tissue" EXACT [OBOL:automatic]
synonym: "ductus deferens epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of deferent duct" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ductus deferens" EXACT [OBOL:automatic]
synonym: "epithelial tissue of sperm duct" EXACT [OBOL:automatic]
synonym: "epithelial tissue of vas deferen" EXACT [OBOL:automatic]
synonym: "epithelial tissue of vas deferens" EXACT [OBOL:automatic]
synonym: "epithelium of deferent duct" EXACT [OBOL:automatic]
synonym: "epithelium of ductus deferens" EXACT [OBOL:automatic]
synonym: "epithelium of sperm duct" EXACT [OBOL:automatic]
synonym: "epithelium of vas deferen" EXACT [OBOL:automatic]
synonym: "epithelium of vas deferens" EXACT [OBOL:automatic]
synonym: "sperm duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "sperm duct epithelium" EXACT [OBOL:automatic]
synonym: "vas deferen epithelial tissue" EXACT [OBOL:automatic]
synonym: "vas deferen epithelium" EXACT [OBOL:automatic]
synonym: "vas deferens epithelial tissue" EXACT [OBOL:automatic]
xref: EMAPA:29274
xref: FMA:225317
xref: MA:0001749
xref: ncithesaurus:Vas_Deferens_Epithelium
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001000
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001000 ! vas deferens
relationship: part_of UBERON:0001000 ! vas deferens
[Term]
id: UBERON:0004807
name: respiratory system epithelium
def: "An epithelium that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius epithelial tissue" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "epithelial tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "epithelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "epithelium of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001823
xref: VHOG:0000981
is_a: UBERON:0000483 ! epithelium
relationship: part_of UBERON:0001004
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004808
name: gastrointestinal system epithelium
def: "An epithelium that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system epithelial tissue" EXACT [OBOL:automatic]
synonym: "digestive system epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of digestive system" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "epithelium of digestive system" EXACT [OBOL:automatic]
synonym: "epithelium of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "gastrointestinal system epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001520
is_a: UBERON:0000483 ! epithelium
relationship: part_of UBERON:0005409
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0005409 ! gastrointestinal system
relationship: part_of UBERON:0005409 ! gastrointestinal system
[Term]
id: UBERON:0004809
name: salivary gland epithelium
def: "An epithelium that is part of a salivary gland [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of salivary gland" EXACT [OBOL:automatic]
synonym: "epithelium of salivary gland" EXACT [OBOL:automatic]
synonym: "salivary gland epithelial tissue" EXACT [OBOL:automatic]
xref: BTO:0004421
xref: EMAPA:17753
xref: EMAPA:17756
xref: MA:0001587
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001044
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001044 ! salivary gland
relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! skin basal layer
relationship: part_of UBERON:0001044 ! salivary gland
[Term]
id: UBERON:0004810
name: nephron tubule epithelium
def: "An epithelium that is part of a nephron tubule [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of nephron tubule" EXACT [OBOL:automatic]
synonym: "epithelial tissue of renal tubule" EXACT [OBOL:automatic]
synonym: "epithelial tissue of tubulus renalis" EXACT [OBOL:automatic]
synonym: "epithelium of nephron tubule" EXACT [OBOL:automatic]
synonym: "epithelium of renal tubule" EXACT [OBOL:automatic]
synonym: "epithelium of tubulus renalis" EXACT [OBOL:automatic]
synonym: "nephron tubule epithelial tissue" EXACT [OBOL:automatic]
synonym: "nephron tubule epithelium" EXACT [OBOL:automatic]
synonym: "renal tubule epithelial tissue" EXACT [OBOL:automatic]
synonym: "tubulus renalis epithelial tissue" EXACT [OBOL:automatic]
synonym: "tubulus renalis epithelium" EXACT [OBOL:automatic]
xref: MA:0001681
xref: ncithesaurus:Renal_Tubule_Epithelium
is_a: UBERON:0004211 ! nephron epithelium
relationship: part_of UBERON:0001231
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001231 ! nephron tubule
relationship: part_of UBERON:0001231 ! nephron tubule
[Term]
id: UBERON:0004811
name: endometrium epithelium
def: "An epithelium that is part of a endometrium [Obol]." [OBOL:automatic]
comment: AO notes: this is an only child term in MA. Taxon notes: In rodents and primates, the uterine epithelium (the endometrium) is eroded away so that maternal blood comes into direct contact with the trophoblast surface (called haemochorial) [PMID:19829370]
synonym: "endometrium epithelial tissue" EXACT [OBOL:automatic]
synonym: "epithelial tissue of endometrium" EXACT [OBOL:automatic]
synonym: "epithelium of endometrium" EXACT [OBOL:automatic]
synonym: "epithelium of tunica mucosa (endometrium)" EXACT [OBOL:automatic]
synonym: "uterine epithelium" RELATED [PMID:19829370]
xref: MA:0002731
is_a: UBERON:0006955 ! uterine epithelium
relationship: part_of UBERON:0001295
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001295 ! endometrium
relationship: part_of UBERON:0001295 ! endometrium
[Term]
id: UBERON:0004812
name: male prepuce epithelium
def: "An epithelium that is part of a prepuce of penis [Obol]." [OBOL:automatic]
comment: Editor notes: NCITA term may be sex-neutral
synonym: "epithelial tissue of foreskin" EXACT [OBOL:automatic]
synonym: "epithelial tissue of penile prepuce" EXACT [OBOL:automatic]
synonym: "epithelial tissue of prepuce" BROAD [OBOL:automatic]
synonym: "epithelial tissue of prepuce of penis" EXACT [OBOL:automatic]
synonym: "epithelium of foreskin" EXACT [OBOL:automatic]
synonym: "epithelium of penile prepuce" EXACT [OBOL:automatic]
synonym: "epithelium of prepuce" BROAD [OBOL:automatic]
synonym: "epithelium of prepuce of penis" EXACT [OBOL:automatic]
synonym: "foreskin epithelial tissue" EXACT [OBOL:automatic]
synonym: "foreskin epithelium" EXACT [OBOL:automatic]
synonym: "penile prepuce epithelial tissue" EXACT [OBOL:automatic]
synonym: "penile prepuce epithelium" EXACT [OBOL:automatic]
synonym: "prepuce epithelial tissue" BROAD [OBOL:automatic]
synonym: "prepuce epithelium" EXACT [MA:0001753]
synonym: "prepuce of penis epithelial tissue" EXACT [OBOL:automatic]
synonym: "prepuce of penis epithelium" BROAD [OBOL:automatic]
xref: EMAPA:30638
xref: EMAPA:30655
xref: MA:0001753
xref: ncithesaurus:Prepuce_Epithelium
is_a: UBERON:0004803 ! penis epithelium
relationship: part_of UBERON:0001332
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001332 ! prepuce of penis
relationship: part_of UBERON:0001332 ! prepuce of penis
[Term]
id: UBERON:0004813
name: seminiferous tubule epithelium
def: "The epithelium lining the seminiferous tubules composed of primary male germ cells (spermatogonia) and supporting sertoli cells. As spermatogenesis proceeds, the developing germ cells migrate toward the lumen. The adluminal compartment, the inner two thirds of the tubules, contains spermatocytes and the more advanced germ cells[GAID]." [Wikipedia:Germinal_epithelium_(male)]
synonym: "epithelial tissue of seminiferous tubule" EXACT [OBOL:automatic]
synonym: "epithelial tissue of seminiferous tubule of testis" EXACT [OBOL:automatic]
synonym: "epithelium of seminiferous tubule" EXACT [OBOL:automatic]
synonym: "epithelium of seminiferous tubule of testis" EXACT [OBOL:automatic]
synonym: "germinal epithelium (male)" EXACT [Wikipedia:Germinal_epithelium_(male)]
synonym: "male germinal epithelium" EXACT [Wikipedia:Germinal_epithelium_(male)]
synonym: "seminiferous epithelium" EXACT [BTO:0001811]
synonym: "seminiferous tubule epithelial tissue" EXACT [OBOL:automatic]
synonym: "testis germinal epithelium" EXACT [VHOG:0000631]
synonym: "wall of seminiferous tubule" EXACT [Wikipedia:Germinal_epithelium_(male)]
xref: BTO:0001811
xref: EHDAA:8148
xref: FMA:19885
xref: GAID:401
xref: MA:0001748
xref: MESH:A.05.360.444.849.700.700
xref: ncithesaurus:Seminiferous_Epithelium
xref: RETIRED_EHDAA2:0002009
xref: VHOG:0000631
is_a: UBERON:0001136 ! mesothelium
is_a: UBERON:0004910 ! epithelium of male gonad
relationship: part_of UBERON:0001343
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001343 ! seminiferous tubule of testis
relationship: part_of UBERON:0001343 ! seminiferous tubule of testis
[Term]
id: UBERON:0004814
name: upper respiratory tract epithelium
def: "An epithelium that is part of a upper respiratory tract [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of upper respiratory tract" EXACT [OBOL:automatic]
synonym: "epithelium of upper respiratory tract" EXACT [OBOL:automatic]
synonym: "upper respiratory tract epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001912
is_a: UBERON:0004802 ! respiratory tract epithelium
relationship: part_of UBERON:0001557
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001557 ! upper respiratory tract
relationship: part_of UBERON:0001557 ! upper respiratory tract
[Term]
id: UBERON:0004815
name: lower respiratory tract epithelium
def: "An epithelium that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "epithelium of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "lower respiratory tract epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001481
is_a: UBERON:0004802 ! respiratory tract epithelium
relationship: part_of UBERON:0001558
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001558 ! lower respiratory tract
relationship: part_of UBERON:0001558 ! lower respiratory tract
[Term]
id: UBERON:0004816
name: larynx epithelium
def: "An epithelium that is part of a larynx [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of larynx" EXACT [OBOL:automatic]
synonym: "epithelium of larynx" EXACT [OBOL:automatic]
synonym: "laryngeal epithelium" EXACT [OBOL:automatic]
synonym: "larynx epithelial tissue" EXACT [OBOL:automatic]
xref: EHDAA2:0004065
xref: MA:0001765
xref: ncithesaurus:Laryngeal_Epithelium
is_a: UBERON:0004814 ! upper respiratory tract epithelium
relationship: part_of UBERON:0001737
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0004817
name: lacrimal gland epithelium
def: "An epithelium that is part of a lacrimal gland [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of lacrimal gland" EXACT [OBOL:automatic]
synonym: "epithelium of lacrimal gland" EXACT [OBOL:automatic]
synonym: "lacrimal gland epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001297
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001817
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001817 ! lacrimal gland
relationship: part_of UBERON:0001817 ! lacrimal gland
[Term]
id: UBERON:0004818
name: terminal bronchus epithelium
def: "An epithelium that is part of a terminal bronchus [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of terminal bronchus" EXACT [OBOL:automatic]
synonym: "epithelium of terminal bronchus" EXACT [OBOL:automatic]
synonym: "terminal bronchus epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001851
is_a: UBERON:0002031 ! epithelium of bronchus
relationship: part_of UBERON:0002041
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002041 ! terminal bronchus
relationship: part_of UBERON:0002041 ! terminal bronchus
[Term]
id: UBERON:0004819
name: kidney epithelium
def: "An epithelium that is part of a kidney [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of kidney" EXACT [OBOL:automatic]
synonym: "epithelium of kidney" EXACT [OBOL:automatic]
synonym: "kidney epithelial tissue" EXACT [OBOL:automatic]
xref: BTO:0000059
xref: MA:0002846
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002113
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0004820
name: bile duct epithelium
def: "Epithelium of the gallbladder and the intrahepatic and extrahepatic bile ducts." [BTO:0001513]
comment: todo - check if BTO terms need merged
synonym: "bile duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "biliary duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "biliary duct epithelium" EXACT [OBOL:automatic]
synonym: "biliary epithelium" EXACT [BTO:0001513]
synonym: "epithelial tissue of bile duct" EXACT [OBOL:automatic]
synonym: "epithelial tissue of biliary duct" EXACT [OBOL:automatic]
synonym: "epithelium of bile duct" EXACT [OBOL:automatic]
synonym: "epithelium of biliary duct" EXACT [OBOL:automatic]
xref: BTO:0000417
xref: BTO:0001513
xref: MA:0001629
xref: ncithesaurus:Bile_Duct_Epithelium
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0002394
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002394 ! bile duct
relationship: part_of UBERON:0002394 ! bile duct
[Term]
id: UBERON:0004821
name: pulmonary alveolus epithelium
def: "the epithelial layer of the alveoli[MP]. The layer of cells covering the lining of the tiny air sacs at the end of the bronchioles[BTO]." [BTO:0003511, MP:0010898]
synonym: "alveolus epithelial tissue" EXACT [OBOL:automatic]
synonym: "alveolus epithelium" EXACT [MA:0001771]
synonym: "epithelial tissue of alveolus" EXACT [OBOL:automatic]
synonym: "epithelium of alveolus" EXACT [OBOL:automatic]
synonym: "pulmonary alveolar epithelium" EXACT [FMA:63915]
synonym: "pulmonary alveolus epithelium" EXACT [MP:0010898]
xref: BTO:0003511
xref: FMA:63915
xref: MA:0001771
is_a: UBERON:0000115 ! lung epithelium
is_a: UBERON:0000487 {source="FMA"} ! simple squamous epithelium
relationship: part_of UBERON:0002299
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002299 ! alveolus of lung
relationship: part_of UBERON:0002299 ! alveolus of lung
relationship: part_of UBERON:0004894 {source="FMA"} ! alveolar wall
[Term]
id: UBERON:0004822
name: extrahepatic bile duct epithelium
def: "An epithelium that is part of a extrahepatic bile duct [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of extrahepatic bile duct" EXACT [OBOL:automatic]
synonym: "epithelium of extrahepatic bile duct" EXACT [OBOL:automatic]
synonym: "extrahepatic bile duct epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0002661
xref: ncithesaurus:Extrahepatic_Bile_Duct_Epithelium
is_a: UBERON:0004820 ! bile duct epithelium
relationship: part_of UBERON:0003703
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003703 ! extrahepatic bile duct
relationship: part_of UBERON:0003703 ! extrahepatic bile duct
[Term]
id: UBERON:0004823
name: intrahepatic bile duct epithelium
def: "An epithelium that is part of a intrahepatic bile duct [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of intrahepatic bile duct" EXACT [OBOL:automatic]
synonym: "epithelium of intrahepatic bile duct" EXACT [OBOL:automatic]
synonym: "intrahepatic bile duct epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0002662
xref: ncithesaurus:Intrahepatic_Bile_Duct_Epithelium
is_a: UBERON:0004820 ! bile duct epithelium
relationship: part_of UBERON:0003704
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003704 ! intrahepatic bile duct
relationship: part_of UBERON:0003704 ! intrahepatic bile duct
[Term]
id: UBERON:0004825
name: dental lamina
def: "a band of epithelial tissue seen in histologic sections of a developing tooth. The dental lamina is first evidence of tooth development and begins at the sixth week in utero or three weeks after the rupture of the buccopharyngeal membrane. It is formed when cells of the oral ectoderm proliferate faster than cells of other areas. Best described as an in-growth of oral ectoderm, the dental lamina is frequently distinguished from the vestibular lamina, which develops concurrently. This dividing tissue is surrounded by and, some would argue, stimulated by ectomysenchymal growth. When it is present, the dental lamina connects the developing tooth bud to the epithelium of the oral cavity. Eventually, the dental lamina disintegrates into small clusters of epithelium and is resorbed. In situations when the clusters are not resorbed, (this remanent of the dental lamina is sometimes known as the glands of Serres) eruption cysts are formed over the developing tooth and delay its eruption into the oral cavity. This invagination of ectodermal tissues is the progenitor to the later ameloblasts and enamel while the ectomysenchyme is responsible for the odontogenic papilla and later odontoblasts." [Wikipedia:Dental_lamina]
comment: Homology notes: In the epidermis of embryonic birds, there remains a transient thickening that is comparable to the early formation of the dental lamina in the mouse[PMID:10954731]. AO notes: check MA placement, this structure is the developing structure
synonym: "embryonic dental lamina" EXACT []
synonym: "lamina dentalis" RELATED LATIN [Wikipedia:Dental_lamina]
xref: EMAPA:18292
xref: EMAPA:18295
xref: EMAPA:18298
xref: EMAPA:18301
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/Dentallamina11-17-05.jpg
xref: MA:0001597
xref: SCTID:362862007
is_a: UBERON:0000957 ! lamina
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001091 {source="MA"} ! calcareous tooth
[Term]
id: UBERON:0004827
name: thyroid gland medulla
def: "A medulla that is part of a thyroid [Obol]." [OBOL:automatic]
synonym: "medulla of thyroid" EXACT [OBOL:automatic]
synonym: "medulla of thyroid follicle" EXACT [OBOL:automatic]
synonym: "medulla of thyroid gland" EXACT [OBOL:automatic]
synonym: "medulla of thyroid gland follicle" EXACT [OBOL:automatic]
synonym: "thyroid follicle medulla" EXACT [OBOL:automatic]
synonym: "thyroid gland follicle medulla" EXACT [OBOL:automatic]
synonym: "thyroid medulla" EXACT [OBOL:automatic]
xref: MA:0000132
is_a: UBERON:0000958 ! medulla
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002046
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0002046 ! thyroid gland
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0004829
name: urethra skeletal muscle
def: "A portion of skeletal muscle tissue that is part of a urethra [Obol]." [OBOL:automatic]
synonym: "skeletal muscle of urethra" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of urethra" EXACT [OBOL:automatic]
synonym: "urethra skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "urethral skeletal muscle" RELATED [MA:0001690]
xref: MA:0001690
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000057
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0003829 ! urethra muscle
[Term]
id: UBERON:0004830
name: respiratory system skeletal muscle
def: "A portion of skeletal muscle tissue that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "respiratory system skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "skeletal muscle of respiratory system" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001829
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004831
name: esophagus skeletal muscle
def: "A portion of skeletal muscle tissue that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophagus skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "gullet skeletal muscle" EXACT [OBOL:automatic]
synonym: "gullet skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "oesophagus skeletal muscle" EXACT [OBOL:automatic]
synonym: "oesophagus skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of esophagus" EXACT [OBOL:automatic]
synonym: "skeletal muscle of gullet" EXACT [OBOL:automatic]
synonym: "skeletal muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of esophagus" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of gullet" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of oesophagus" EXACT [OBOL:automatic]
xref: MA:0001572
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003898 ! skeletal muscle of trunk
relationship: part_of UBERON:0001043
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0003832 ! esophagus muscle
[Term]
id: UBERON:0004832
name: anal region skeletal muscle
def: "A portion of skeletal muscle tissue that is part of an anal region [Obol]." [OBOL:automatic]
synonym: "anal part of perineum skeletal muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "anal region skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "anal triangle skeletal muscle" EXACT [OBOL:automatic]
synonym: "anal triangle skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "skeletal muscle of anal region" EXACT [OBOL:automatic]
synonym: "skeletal muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of anal part of perineum" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of anal region" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of anal triangle" EXACT [OBOL:automatic]
xref: MA:0001530
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0001353
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001353 ! anal region
relationship: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0004833
name: lip skeletal muscle
def: "A portion of skeletal muscle tissue that is part of a lip [Obol]." [OBOL:automatic]
synonym: "lip skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of lip" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of lip" EXACT [OBOL:automatic]
xref: MA:0001578
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003899 ! skeletal muscle of head
relationship: part_of UBERON:0001833
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001833 ! lip
relationship: part_of UBERON:0001833 ! lip
[Term]
id: UBERON:0004834
name: hepatic duct smooth muscle
xref: MA:0001640
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0005171
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0005171 ! hepatic duct
relationship: part_of UBERON:0005171 ! hepatic duct
[Term]
id: UBERON:0004835
name: epididymis smooth muscle
def: "A portion of smooth muscle tissue that is part of a epididymis [Obol]." [OBOL:automatic]
synonym: "epididymis involuntary muscle" EXACT [OBOL:automatic]
synonym: "epididymis non-striated muscle" EXACT [OBOL:automatic]
synonym: "epididymis smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "epididymus involuntary muscle" EXACT [OBOL:automatic]
synonym: "epididymus non-striated muscle" EXACT [OBOL:automatic]
synonym: "epididymus smooth muscle" EXACT [OBOL:automatic]
synonym: "epididymus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of epididymis" EXACT [OBOL:automatic]
synonym: "involuntary muscle of epididymus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of epididymis" EXACT [OBOL:automatic]
synonym: "non-striated muscle of epididymus" EXACT [OBOL:automatic]
synonym: "smooth muscle of epididymis" EXACT [OBOL:automatic]
synonym: "smooth muscle of epididymus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of epididymis" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of epididymus" EXACT [OBOL:automatic]
xref: MA:0001736
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001301
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001301 ! epididymis
relationship: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0004848
name: respiratory system arterial endothelium
def: "An endothelium of artery that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius arterial endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius artery endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of artery" EXACT [OBOL:automatic]
synonym: "arterial endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "arterial endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "artery endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "artery endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "endothelium of artery of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of artery of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system artery endothelium" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of artery" EXACT [OBOL:automatic]
xref: MA:0001801
is_a: UBERON:0001917 ! endothelium of artery
is_a: UBERON:0004702 ! respiratory system blood vessel endothelium
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001917 ! endothelium of artery
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0003643 ! respiratory system arterial blood vessel
[Term]
id: UBERON:0004849
name: respiratory system venous endothelium
def: "An endothelium of vein that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of vein" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius vein endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius venous endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of vein of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of vein of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of vein" EXACT [OBOL:automatic]
synonym: "respiratory system vein endothelium" EXACT [OBOL:automatic]
synonym: "vein endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "vein endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "venous endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "venous endothelium of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001811
is_a: UBERON:0001919 ! endothelium of vein
is_a: UBERON:0004702 ! respiratory system blood vessel endothelium
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001919 ! endothelium of vein
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0003476 ! respiratory system venous blood vessel
[Term]
id: UBERON:0004850
name: lymph node endothelium
def: "An endothelium that is part of a lymph node [Obol]." [OBOL:automatic]
synonym: "endothelium of lymph node" EXACT [OBOL:automatic]
xref: MA:0000741
is_a: UBERON:0001986 ! endothelium
relationship: part_of UBERON:0000029
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0004851
name: aorta endothelium
def: "An endothelium that is part of an aorta [Obol]." [OBOL:automatic]
synonym: "adult aorta endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of adult aorta" EXACT [OBOL:automatic]
synonym: "endothelium of aorta" EXACT [OBOL:automatic]
synonym: "endothelium of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "endothelium of trunk of systemic arterial tree" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree endothelium" EXACT [OBOL:automatic]
synonym: "trunk of systemic arterial tree endothelium" EXACT [OBOL:automatic]
xref: BTO:0000394
xref: EFO:0002597
xref: MA:0000701
xref: ncithesaurus:Aorta_Endothelium
is_a: UBERON:0001917 ! endothelium of artery
relationship: part_of UBERON:0000947
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0004852
name: cardiovascular system endothelium
def: "An endothelium that is part of the cardiovascular system." [UBERON:cjm]
comment: consider merging with 'endothelium'
subset: vertebrate_core
xref: BTO:0001853
xref: GAID:519
xref: MA:0000717
xref: MESH:A.07.231.330
xref: TAO:0002171
xref: VHOG:0001217
xref: XAO:0000356
xref: ZFA:0001639
is_a: UBERON:0001986 ! endothelium
relationship: part_of UBERON:0004535
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0004535 ! cardiovascular system
relationship: part_of UBERON:0004535 ! cardiovascular system
[Term]
id: UBERON:0004854
name: gastrointestinal system mesentery
def: "A mesentery that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system mesentery" EXACT [OBOL:automatic]
synonym: "mesentery of digestive system" EXACT [OBOL:automatic]
synonym: "mesentery of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001900
is_a: UBERON:0002095 ! mesentery
is_a: UBERON:0004782 ! gastrointestinal system serosa
relationship: part_of UBERON:0005409
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0005409 ! gastrointestinal system
relationship: part_of UBERON:0005409 ! gastrointestinal system
[Term]
id: UBERON:0004857
name: skeletal muscle connective tissue
comment: no corresponding term in FMA? Skeletal muscle endomysium would be a subtype
synonym: "connective tissue of skeletal muscle" EXACT [OBOL:automatic]
synonym: "connective tissue of skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of skeletal muscle" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle endomysium" EXACT [FMA:86022]
synonym: "skeletal muscle interstitial tissue" RELATED [MA:0002868]
synonym: "skeletal muscle interstitum" RELATED [MA:0002868]
synonym: "skeletal muscle portion of connective tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle textus connectivus" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue connective tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue portion of connective tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of skeletal muscle" EXACT [OBOL:automatic]
synonym: "textus connectivus of skeletal muscle tissue" EXACT [OBOL:automatic]
xref: FMA:86022
xref: MA:0002868
is_a: UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0001134
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: surrounds UBERON:0001134 ! skeletal muscle tissue
relationship: surrounds UBERON:0001134 ! skeletal muscle tissue
[Term]
id: UBERON:0004858
name: cellular cartilage
xref: MA:0000105
xref: SCTID:81997001
is_a: UBERON:0002418 ! cartilage tissue
[Term]
id: UBERON:0004859
name: eye gland
def: "A gland that is part of a eye [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "gland of eye" EXACT [OBOL:automatic]
xref: MA:0000267
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0002530 ! gland
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000019
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0004860
name: brain ventricular zone
is_obsolete: true
consider: UBERON:0003053
[Term]
id: UBERON:0004861
name: right lung alveolus
def: "An alveolus that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "alveolus of right lung" EXACT [OBOL:automatic]
xref: EMAPA:19184
xref: EMAPA:19186
xref: EMAPA:19188
xref: EMAPA:19190
xref: MA:0001786
xref: ncithesaurus:Right_Lung_Alveolus
is_a: UBERON:0002299 ! alveolus of lung
relationship: part_of UBERON:0002167
intersection_of: UBERON:0003215 ! alveolus
intersection_of: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0006526 ! right lung alveolar system
[Term]
id: UBERON:0004862
name: left lung alveolus
def: "An alveolus that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "alveolus of left lung" EXACT [OBOL:automatic]
xref: EMAPA:19182
xref: MA:0001777
xref: ncithesaurus:Left_Lung_Alveolus
is_a: UBERON:0002299 ! alveolus of lung
relationship: part_of UBERON:0002168
intersection_of: UBERON:0003215 ! alveolus
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0006525 ! left lung alveolar system
[Term]
id: UBERON:0004863
name: thoracic sympathetic nerve trunk
def: "A sympathetic nerve trunk that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "nerve trunk of sympathetic nervous system of thorax" EXACT [OBOL:automatic]
synonym: "nerve trunk of sympathetic part of autonomic division of nervous system of thorax" EXACT [OBOL:automatic]
synonym: "sympathetic nerve trunk of thorax" EXACT [OBOL:automatic]
synonym: "sympathetic nervous system nerve trunk of thorax" EXACT [OBOL:automatic]
synonym: "thoracic sympathetic trunk" RELATED [FMA:6262]
synonym: "thorax nerve trunk of sympathetic nervous system" EXACT [OBOL:automatic]
synonym: "thorax nerve trunk of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic]
synonym: "thorax sympathetic nerve trunk" EXACT [OBOL:automatic]
synonym: "thorax sympathetic nervous system nerve trunk" EXACT [OBOL:automatic]
xref: FMA:6262
xref: MA:0001165
xref: ncithesaurus:Thoracic_Sympathetic_Nerve_Trunk
is_a: UBERON:0004295 ! sympathetic nerve trunk
relationship: part_of UBERON:0000915
intersection_of: UBERON:0004295 ! sympathetic nerve trunk
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0004864
name: vasculature of retina
def: "A vasculature that is part of a retina [Obol]." [OBOL:automatic]
synonym: "retina vasculature" EXACT [OBOL:automatic]
synonym: "retinal blood vessels" EXACT [FMA:76552]
synonym: "retinal blood vessels set" EXACT [FMA:76552]
synonym: "retinal vasculature" EXACT [OBOL:automatic]
synonym: "set of blood vessels of retina" EXACT [OBOL:automatic]
synonym: "set of retinal blood vessels" EXACT [FMA:76552]
synonym: "vasa sanguinea retinae" EXACT [FMA:76552, FMA:TA]
xref: FMA:76552
xref: MESH:A.07.231.611
xref: XAO:0004153
is_a: UBERON:0002203 ! vasculature of eye
relationship: part_of UBERON:0000966
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000966 ! retina
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0004865
name: teleost parietal bone
def: "Paired dermal bone that covers the hind part of the cranium, overlapping the dorsal edge of the sphenotic, pterotic, epiotic and the anterior edge of the supraoccipital. The parietal are overlapped anteriorly by the frontal." [ZFA:0000486]
synonym: "frontal bone" NARROW [FMA:52734]
synonym: "parietal bone" NARROW SENSU [TAO:0000486]
synonym: "post parietal" RELATED [ZFA:0000486]
synonym: "teleost parietal" EXACT []
xref: TAO:0000486
xref: VHOG:0001327
xref: ZFA:0000486
property_value: UBPROP:0000001 "Dermal bone that covers the otic region and may articulate with its antimere medially, with the frontal bone anteriorly, the pterotic laterally, the supraoccipital medio-posteriorly, and the epiotic and extrascapula latero-posteriorly. The parietal is a paired bone.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps frontal-parietal joint (TAO:0005255)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps inter-parietal joint (TAO:0005245)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps posttemporal-parietal joint (TAO:0002059)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps supraoccipital-parietal joint (TAO:0005264)[TAO]" xsd:string
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0011164 ! neurocranium bone
relationship: part_of UBERON:0001703 {source="ZFA"} ! neurocranium
relationship: part_of UBERON:0003110 {source="ZFA"} ! otic region
relationship: part_of UBERON:0003113 {source="ZFA"} ! dermatocranium
relationship: part_of UBERON:0004339 {source="PMID:11523816"} ! vault of skull
[Term]
id: UBERON:0004866
name: teleost frontal bone
def: "One of two large elongated paired dermal bones that roof the cranium and bear part of the supraorbital canal. The frontal bones cover the upper edge of the lateral ethmoid, orbitosphenoid and pterosphenoids and overlaps the parietal bone posteriorly." [ZFA:0000514]
comment: The frontal bone in teleost fish is the homolog of the parietal bone in tetrapods
synonym: "frontal bone" NARROW [TAO:0000514]
synonym: "teleost frontal" EXACT [TAO:0000514]
synonym: "teleost frontal bone" EXACT [TAO:0000514]
xref: TAO:0000514
xref: VHOG:0001324
xref: ZFA:0000514
property_value: UBPROP:0000001 "Dermal bone that bears part of the supraorbital canal and usually covers a large area of the neurocranium occupying part of the ethmoidal, orbitosphenoid, and otic regions. Commonly, the frontal bone articulates with its antimere medially, with lateral ethmoid, orbitosphenoid and pterosphenoid ventrolaterally, with supraorbital bone(s), autosphenotic and pterotic laterally, and with parietal posteriorly.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps frontal-parietal joint (TAO:0005255)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps frontal-pterotic joint (TAO:0001711)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps inter-frontal joint (TAO:0001922)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps lateral ethmoid-frontal joint (TAO:0002032)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps mesethmoid-frontal joint (TAO:0001678)[TAO]" xsd:string
is_a: UBERON:0008907 {source="ZFA"} ! dermal bone
is_a: UBERON:0011164 ! neurocranium bone
relationship: overlaps UBERON:0001697 {source="ZFA-modified"} ! orbital region
relationship: part_of UBERON:0001703 {source="ZFA"} ! neurocranium
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0003113 {source="ZFA"} ! dermatocranium
relationship: part_of UBERON:0004339 {source="PMID:11523816"} ! vault of skull
[Term]
id: UBERON:0004867
name: orbital cavity
comment: AO notes: note that the AAO class is a cavity
synonym: "orbit" RELATED [AAO:0000343]
xref: AAO:0000343
xref: FMA:84961
xref: SCTID:280541000
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001697
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: part_of UBERON:0001697 ! orbital region
relationship: part_of UBERON:0001697 ! orbital region
[Term]
id: UBERON:0004868
name: tapetum lucidum
def: "a layer of tissue in the eye of many vertebrate animals, that lies immediately behind or sometimes within the retina. It reflects visible light back through the retina, increasing the light available to the photoreceptors" [Wikipedia:Tapetum_lucidum]
property_value: RO:0002161 NCBITaxon:8782
property_value: RO:0002161 NCBITaxon:9606
property_value: RO:0002161 NCBITaxon:9822
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0010230 ! eyeball of camera-type eye
[Term]
id: UBERON:0004869
name: parietal organ
def: "A part of the epithalamus present in some animal species. The eye may be photoreceptive and is usually associated with the pineal gland, regulating circadian rhythmicity and hormone production for thermoregulation. The parietal eye is a part of the epithalamus, which can be divided into two major parts; the epiphysis (the pineal organ, or pineal gland if mostly endocrine) and the parietal organ (often called the parietal eye, or third eye if it is photoreceptive). It arises as an anterior evagination of the pineal organ or as a separate outgrowth of the roof of the diencephalon. In some species, it protrudes through the skull.[4] The parietal eye uses a different biochemical method of detecting light than rod cells or cone cells in a normal vertebrate eye[WP]." [Wikipedia:Parietal_eye]
synonym: "parietal eye" EXACT [Wikipedia:Parietal_eye]
synonym: "third eye" RELATED [Wikipedia:Parietal_eye]
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001899 ! epithalamus
[Term]
id: UBERON:0004870
name: superficial cervical lymph node
def: "A group of nodes lying along the external jugular vein; they drain the skin and superficial structures over the region of the sternocleidomastoid muscle and anterior cervical regions. Efferent vessels drain to the deep cervical lymph nodes. Lymph nodes can be further subdivided into anterior and lateral groupings." [CL:tm, ref:Stedmans, Wikipedia:Superficial_cervical_lymph_nodes]
synonym: "nodi lymphoidei cervicales" RELATED LATIN [Wikipedia:Superficial_cervical_lymph_nodes]
synonym: "prescapular lymph node" RELATED []
xref: http://upload.wikimedia.org/wikipedia/commons/4/4e/Illu_quiz_hn_03.jpg
xref: MA:0002886
xref: ncithesaurus:Superficial_Cervical_Lymph_Node
xref: SCTID:279144003
is_a: UBERON:0002429 ! cervical lymph node
is_a: UBERON:0003968 ! peripheral lymph node
[Term]
id: UBERON:0004871
name: somatic layer of lateral plate mesoderm
def: "Layer of lateral plate mesoderm that forms the future body wall - underlies the ectoderm[WP]." [Wikipedia:Lateral_plate_mesoderm#Division_into_layers]
comment: check BILA
synonym: "outer layer of lateral plate mesoderm" EXACT []
synonym: "parietal mesoderm" RELATED [ISBN:9780878932504]
synonym: "somatic mesoderm" RELATED [BILA:0000047]
xref: AAO:0011100
xref: BILA:0000047
xref: XAO:0000271
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0003081 ! lateral plate mesoderm
[Term]
id: UBERON:0004872
name: splanchnic layer of lateral plate mesoderm
def: "Layer of lateral plate mesoderm that forms the circulatory system and future gut wall - overlies endoderm[WP]." [Wikipedia:Lateral_plate_mesoderm#Division_into_layers]
comment: AO notes: We group the BILA class here. Considering adding more general class for metazoa grouping cardiogenic successors
synonym: "inner layer of lateral plate mesoderm" EXACT []
synonym: "splanchnic mesoderm" RELATED [ISBN:9780878932504]
synonym: "visceral mesoderm" BROAD [BILA:0000044, http://www.drugs.com/dict/visceral-mesoderm.html, http://www.stedmans.com/]
xref: AAO:0011102
xref: BILA:0000044
xref: XAO:0000276
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0003081 ! lateral plate mesoderm
[Term]
id: UBERON:0004873
name: splanchnopleure
def: "a structure created during embryogenesis when the lateral mesoderm splits into two layers - the inner (or splanchnic) layer adheres to the endoderm, and with it forms the splanchnopleure[WP]." [Wikipedia:Splanchnopleure]
comment: todo - check relationship to LPM
synonym: "ventral splanchnic mesoderm" RELATED [Wikipedia:Intraembryonic_coelom]
xref: EHDAA2:0001903
xref: EHDAA:383
xref: EMAPA:16181
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray16.png/200px-Gray16.png
xref: ncithesaurus:Splanchnopleure
xref: VHOG:0000558
is_a: UBERON:0005423 ! developing anatomical structure
relationship: overlaps UBERON:0000925 ! endoderm
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0006258 {source="EHDAA2"} ! lateral plate mesenchyme
[Term]
id: UBERON:0004874
name: somatopleure
def: "a structure created during embryogenesis when the lateral mesoderm splits into two layers - the outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]." [Wikipedia:Somatopleure]
comment: todo - check relationship to LPM
xref: EHDAA2:0001847
xref: EHDAA:381
xref: EMAPA:16180
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray16.png/200px-Gray16.png
xref: ncithesaurus:Somatopleure
xref: VHOG:0000557
is_a: UBERON:0005423 ! developing anatomical structure
relationship: overlaps UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0006258 {source="EHDAA2"} ! lateral plate mesenchyme
[Term]
id: UBERON:0004875
name: nephrogenic cord
def: "a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord]
comment: part_of or develops_from urogenital ridge?
synonym: "chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord]
xref: FMA:72168
xref: ncithesaurus:Nephrogenic_Cord
xref: SCTID:361405003
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0004876 ! urogenital ridge
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0004876
name: urogenital ridge
def: "An embryological structure which give rise to a portion of the external genitalia. It differentiates into two structures: gonadal ridge -- medial -- primarily reproductive system; nephrogenic cord -- lateral -- primarily urinary system. In the female, the urogenital folds become the labia minora. In contrast, the labia majora are formed by the labioscrotal folds; In the male, they form the spongy urethra and a portion of the shaft of the penis, not including the glans.[WP]." [Wikipedia:Urogenital_folds]
comment: Less commonly, urogenital fold refers to the fold in the mesonephros which is the precursor of e.g. the suspensory ligament of the ovary. This is the case in older versions of Gray's anatomy[WP]
synonym: "urogenital fold" EXACT []
xref: BTO:0001402
xref: EHDAA2:0004022
xref: EMAPA:30888
xref: EMAPA:30899
xref: ncithesaurus:Urogenital_Ridge
xref: SCTID:308801004
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
relationship: develops_into UBERON:0004176 ! external reproductive organ
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0004877
name: visceral endoderm
def: "Visceral endoderm, a population of extraembyonic endoderm, is an extraembryonic tissue that functions in a regulatory capacity but does not contribute directly to the formation of any adult organs[PMID:15905405]. primitive endoderm-derived tissue which remains in contact with and surrounds the extra-embryonic ectoderm and the epiblast and provides signals for the differentiation and patterning of the epiblast; a small number of visceral endoderm cells also contribute to the endoderm of the embryonic gut[MP]." [PMID:15905405]
xref: BTO:0003487
xref: EFO:0003626
xref: EMAPA:16058
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000925 ! endoderm
[Term]
id: UBERON:0004878
name: distal visceral endoderm
def: "precursors of the anterior visceral endoderm that arises at the distal tip of the embryo[MP]" [MP:0010126]
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000925 ! endoderm
[Term]
id: UBERON:0004879
name: marginal zone of embryo
def: "Belt-like region of presumptive mesoderm at the equator of the late blastula." [XAO:0000068]
comment: todo - check
subset: early_development
synonym: "margin" BROAD [ZFA:0000038]
synonym: "marginal zone" BROAD [XAO:0000068]
xref: AAO:0010448
xref: TAO:0000038
xref: XAO:0000068
xref: ZFA:0000038
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0004880
name: chordamesoderm
def: "The central region of trunk mesoderm. This tissue forms the notochord" [UBERON:cjm]
comment: note that WP treats this as synonym of axial mesoderm. Induces neural tube. Gilbert: contains an anterior head process and the notochord.
synonym: "axial chorda mesoderm" EXACT [ZFA:0000091]
synonym: "chorda mesoderm" EXACT []
synonym: "dorsal mesoderm" EXACT [UBERONREF:0000002]
synonym: "presumptive notochord" EXACT [ZFA:0000091]
xref: AAO:0000478
xref: EFO:0003426
xref: TAO:0000091
xref: ZFA:0000091
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0003068 ! axial mesoderm
[Term]
id: UBERON:0004882
name: eponychium
def: "Thickened layer of skin surrounding fingernails and toenails. Beneath the cuticle is a thin layer of a membrane known as the pterygium. The function is to protect the area between the nail and epidermis from exposure to harmful bacteria. The vascularization pattern is similar to that of perionychium. The eponychium is the end of the proximal fold that folds back upon itself to shed an epidermal layer of skin onto the newly formed nail plate. This layer of non-living, almost invisible skin is the cuticle that 'rides out' on the surface of the nail plate. Together, the eponychium and the cuticle form a protective seal. The cuticle on the nail plate is dead cells and is often removed during manicure, but the eponychium is living cells and should not be touched.[6] The perionyx is the projecting edge of the eponychium covering the proximal strip of the lunula[WP]." [Wikipedia:Eponychium]
synonym: "cuticle" RELATED [MA:0002704]
xref: FMA:77859
xref: http://upload.wikimedia.org/wikipedia/commons/9/9f/Fingernail_label.jpg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9f/Fingernail_label.jpg/200px-Fingernail_label.jpg
xref: MA:0002704
xref: SCTID:24631007
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0001003 ! epidermis
relationship: surrounds UBERON:0001705 ! nail
[Term]
id: UBERON:0004883
name: lung mesenchyme
def: "the mass of tissue made up of mesenchymal cells in the lung." [GO:0060484]
synonym: "lung-associated mesenchyme" EXACT [GO:0060484]
synonym: "mesenchyme of lung" EXACT [OBOL:automatic]
synonym: "pulmonary mesenchyme" EXACT [GO:0060484]
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
relationship: part_of UBERON:0002048
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002048 ! lung
relationship: develops_from UBERON:0003081 ! lateral plate mesoderm
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0004884
name: lobar bronchus mesenchyme
def: "the mass of tissue composed of mesenchymal cells in the lobar bronchus.." [GO:0060483]
synonym: "mesenchyme of lobar bronchus" EXACT [OBOL:automatic]
is_a: UBERON:0004883 ! lung mesenchyme
relationship: part_of UBERON:0002183
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002183 ! lobar bronchus
relationship: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0004885
name: hilum
alt_id: UBERON:0004460
def: "An anatomical cavity, depression or pit where structures are attached." [Wikipedia:Hilum_of_kidney_of_lung_of_lymph_node]
synonym: "hilus" EXACT [Wikipedia:Hilum]
xref: EMAPA:19303
xref: FMA:57836
xref: galen:Hilum
xref: ncithesaurus:Hilum
is_a: UBERON:0000161 ! orifice
[Term]
id: UBERON:0004886
name: lung hilus
def: "A depression on the surface of the lung where the bronchus, blood vessels and nerves enter." [GOC:lung_mtg, ISBN:0721662544]
synonym: "hilum of lung" EXACT []
synonym: "hilum pulmonis" EXACT [FMA:7330, FMA:TA]
synonym: "hilus of lung" EXACT [OBOL:automatic]
synonym: "lung hilum" EXACT [OBOL:automatic]
synonym: "pulmonary hilum" EXACT [FMA:7330]
synonym: "pulmonary hilus" EXACT [OBOL:automatic]
xref: FMA:7330
xref: ncithesaurus:Hilar_Area_of_the_Lung
xref: SCTID:264017007
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004885 ! hilum
relationship: part_of UBERON:0002048
intersection_of: UBERON:0004885 ! hilum
intersection_of: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0004887
name: left lung hilus
def: "A lung hilus that is part of the left lung." [OBOL:automatic]
synonym: "hilum of left lung" EXACT []
synonym: "hilus of left lung" EXACT [OBOL:automatic]
synonym: "left lung hilum" EXACT [OBOL:automatic]
synonym: "left pulmonary hilum" EXACT [FMA:9751]
synonym: "left pulmonary hilus" EXACT [OBOL:automatic]
xref: EHDAA2:0000962
xref: EHDAA:4965
xref: EMAPA:17980
xref: FMA:9751
xref: MA:0001781
xref: SCTID:361983000
xref: VHOG:0000483
is_a: UBERON:0004886 ! lung hilus
relationship: part_of UBERON:0002168
intersection_of: UBERON:0004886 ! lung hilus
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0004888
name: right lung hilus
def: "A lung hilus that is part of the right lung." [OBOL:automatic]
synonym: "hilum of right lung" EXACT []
synonym: "hilus of right lung" EXACT [OBOL:automatic]
synonym: "right lung hilum" EXACT [OBOL:automatic]
synonym: "right pulmonary hilum" EXACT [FMA:7330]
synonym: "right pulmonary hilus" EXACT [OBOL:automatic]
xref: EHDAA2:0001756
xref: EHDAA:4995
xref: EMAPA:17996
xref: FMA:7456
xref: MA:0001790
xref: SCTID:361968005
xref: VHOG:0000482
is_a: UBERON:0004886 ! lung hilus
relationship: part_of UBERON:0002167
intersection_of: UBERON:0004886 ! lung hilus
intersection_of: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0004889
name: lobar bronchus vasculature
def: "Vasculature that is composed of the tubule structures that carry blood or lymph in the lungs" [LG:0012616]
is_a: UBERON:0000102 ! lung vasculature
relationship: part_of UBERON:0002183
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002183 ! lobar bronchus
relationship: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0004890
name: right lung accessory lobe
def: "A specialized lobe of the right lung that extends to the left side of the organism" [LG:0012619]
comment: In humans, the right lung typically has 3 lobes (superior, middle, inferior). The lobar fissures are often incomplete, making a connection between two apposed lobes. Conversely, more than the expected number of lobes may be produced by new fissures e.g. the azygous lobe of the lung. The additional lobes are termed 'accessory lobes' -- http://www.gpnotebook.co.uk/simplepage.cfm?ID=1120927803
synonym: "right lung postcaval lobe" EXACT [MA:0000427]
xref: EHDAA2:0001731
xref: EHDAA:4971
xref: EMAPA:17981
xref: MA:0000427
xref: VHOG:0000831
is_a: UBERON:0006518 ! right lung lobe
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0004891
name: lobar bronchus bronchiole
def: "A bronchiole of the lobar bronchus" [OBOL:automatic]
xref: EMAPA:19000
xref: EMAPA:19002
xref: EMAPA:19004
xref: EMAPA:19006
xref: EMAPA:19008
is_a: UBERON:0002186 ! bronchiole
relationship: part_of UBERON:0002183
intersection_of: UBERON:0002186 ! bronchiole
intersection_of: part_of UBERON:0002183 ! lobar bronchus
relationship: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0004892
name: lobar bronchus alveolar system
def: "The lobar bronchus alveolar system is where molecules of oxygen and carbon dioxide are passively exchanged, by diffusion, between the gaseous environment and the blood in the lobar bronchus" [LG:0012622]
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0004893
name: interalveolar septum
def: "A the thin septum that separates adjacent pulmonary alveoli, containing connective tissue constituents of the respiratory tissue and the capillary network of the blood supply of the lung." [LG:0012625, Wikipedia:Alveolar_septum]
synonym: "alveolar septum" EXACT [UBERON:cjm]
synonym: "septal bone" RELATED [BTO:0003149]
synonym: "septum interalveolare" RELATED [BTO:0003149]
xref: BTO:0003149
xref: MA:0000421
xref: ncithesaurus:Alveolar_Septum
is_a: UBERON:0003037 ! septum
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: adjacent_to UBERON:0002299
intersection_of: UBERON:0003037 ! septum
intersection_of: adjacent_to UBERON:0002299 ! alveolus of lung
relationship: adjacent_to UBERON:0002299 ! alveolus of lung
relationship: part_of UBERON:0006524 ! alveolar system
[Term]
id: UBERON:0004894
name: alveolar wall
def: "A wall that contains the alveoli" [LG:0012626]
synonym: "pulmonary alveolar wall" EXACT [FMA:14117]
synonym: "pulmonary interalveolar septum" EXACT [FMA:14117]
synonym: "wall of pulmonary alveolus" EXACT [FMA:14117]
xref: BTO:0002543
xref: FMA:14117
xref: MA:0002568
xref: ncithesaurus:Alveolar_Wall
xref: SCTID:361965008
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002299
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0002299 ! alveolus of lung
relationship: part_of UBERON:0002299 ! alveolus of lung
[Term]
id: UBERON:0004895
name: alveolar smooth muscle
def: "Alveolar smooth muscle is a type of non-striated muscle, found within the walls of the alveolus" [LG:0012628]
xref: MA:0002759
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004225 ! respiratory system smooth muscle
relationship: part_of UBERON:0002299
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002299 ! alveolus of lung
relationship: part_of UBERON:0002299 ! alveolus of lung
[Term]
id: UBERON:0004896
name: right lung accessory lobe lobar bronchus
def: "The right lung accessory lobe lobar bronchus is the major airway within the right lung accessory lobe that starts at the division of the bronchus on the right side and ends at the point of its own subdivision into tertiary or segmental bronchi" [LG:0012636]
xref: EHDAA2:0001736
xref: VHOG:0000239
is_a: UBERON:0003404 ! lobar bronchus of right lung
relationship: part_of UBERON:0004890
intersection_of: UBERON:0002183 ! lobar bronchus
intersection_of: part_of UBERON:0004890 ! right lung accessory lobe
relationship: part_of UBERON:0004890 ! right lung accessory lobe
[Term]
id: UBERON:0004897
name: right lung accessory lobe lobar bronchus mesynchyme
def: "The right lung accessory lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung accessory lobe lobar bronchus" [LG:0012640]
is_a: UBERON:0004901 ! right lung lobar bronchus mesynchyme
relationship: part_of UBERON:0003404
relationship: part_of UBERON:0004890
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003404 ! lobar bronchus of right lung
intersection_of: part_of UBERON:0004890 ! right lung accessory lobe
relationship: part_of UBERON:0003404 ! lobar bronchus of right lung
relationship: part_of UBERON:0004890 ! right lung accessory lobe
[Term]
id: UBERON:0004898
name: right lung caudal lobe lobar bronchus mesynchyme
is_obsolete: true
[Term]
id: UBERON:0004899
name: right lung cranial lobe lobar bronchus mesynchyme
def: "The right lung cranial lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung cranial lobe lobar bronchus" [LG:0012659]
is_a: UBERON:0004901 ! right lung lobar bronchus mesynchyme
relationship: part_of UBERON:0002170
relationship: part_of UBERON:0003404
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002170 ! upper lobe of right lung
intersection_of: part_of UBERON:0003404 ! lobar bronchus of right lung
relationship: part_of UBERON:0002170 ! upper lobe of right lung
relationship: part_of UBERON:0003404 ! lobar bronchus of right lung
[Term]
id: UBERON:0004900
name: right lung middle lobe lobar bronchus mesynchyme
def: "The right lung middle lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung middle lobe lobar bronchus" [LG:0012672]
is_a: UBERON:0004901 ! right lung lobar bronchus mesynchyme
relationship: part_of UBERON:0002174
relationship: part_of UBERON:0003404
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002174 ! middle lobe of right lung
intersection_of: part_of UBERON:0003404 ! lobar bronchus of right lung
relationship: part_of UBERON:0002174 ! middle lobe of right lung
relationship: part_of UBERON:0003404 ! lobar bronchus of right lung
[Term]
id: UBERON:0004901
name: right lung lobar bronchus mesynchyme
def: "The right lung lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung lobar bronchus" [LG:0012681]
is_a: UBERON:0004884 ! lobar bronchus mesenchyme
is_a: UBERON:0009603 ! right lung associated mesenchyme
relationship: part_of UBERON:0002167
relationship: part_of UBERON:0002183
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002167 ! right lung
intersection_of: part_of UBERON:0002183 ! lobar bronchus
relationship: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0004902
name: urogenital sinus epithelium
def: "The fetal urogenital sinus (from which the prostate derives) is a simple cylinder of stratified basal epithelium, surrounded by mesenchyme and positioned between the embryonic bladder and pelvic urethra" [PMID:18977204]
comment: we follow EHDAA2 in dividing the UGS into epithelium and lumen
synonym: "epithelium of urogenital sinus" EXACT [OBOL:automatic]
synonym: "UGE" EXACT [PMID:18977204]
xref: EHDAA2:0004061
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0009846 ! embryonic cloacal epithelium
relationship: part_of UBERON:0000164
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000164 ! primitive urogenital sinus
relationship: develops_from UBERON:0009846 {source="EHDAA2"} ! embryonic cloacal epithelium
relationship: part_of UBERON:0000164 ! primitive urogenital sinus
[Term]
id: UBERON:0004903
name: bronchoalveolar duct junction
def: "A branch point connecting the respiratory bronchioles to the alveolar ducts[MP]." [MP:0004390]
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002173 ! alveolar duct
relationship: part_of UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0004904
name: nerve connecting eye with brain
def: "A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]." [BTO:0000966]
comment: for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II)
subset: grouping_class
synonym: "optic nerve" BROAD [BTO:0000966]
synonym: "optic nerve (generic)" EXACT []
xref: BTO:0000966
xref: EV:0100351
xref: FBbt:00001956
xref: TADS:0000232
is_a: UBERON:0001021 ! nerve
relationship: continuous_with UBERON:0000955
relationship: continuous_with UBERON:0005388
intersection_of: UBERON:0001021 ! nerve
intersection_of: continuous_with UBERON:0000955 ! brain
intersection_of: continuous_with UBERON:0005388 ! photoreceptor array
relationship: continuous_with UBERON:0000955 ! brain
relationship: continuous_with UBERON:0005388 ! photoreceptor array
relationship: part_of UBERON:0002104 ! visual system
[Term]
id: UBERON:0004905
name: articulation
def: "anatomical cluster that connects two or more adjacent skeletal elements or hardened body parts." []
subset: grouping_class
xref: FBbt:00005811
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0004906
name: ectodermal gut
def: "A portion of the gut that is derived from ectoderm." [GO:0007439]
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004185 ! endodermal gut
relationship: develops_from UBERON:0000924
relationship: part_of UBERON:0001555
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: develops_from UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0001555 ! digestive tract
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0004907
name: lower digestive tract
def: "the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
comment: WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L
subset: uberon_slim
synonym: "gut" BROAD [GO:0048565]
synonym: "lower gastrointestinal tract" EXACT []
synonym: "lower GI tract" EXACT []
xref: EHDAA2:0000726
xref: FMA:49179
xref: galen:LowerGastrointestinalTract
xref: MA:0000917
xref: ncithesaurus:Lower_Gastrointestinal_Tract
xref: SCTID:279973004
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0001046 ! hindgut
relationship: part_of UBERON:0005409 ! gastrointestinal system
[Term]
id: UBERON:0004908
name: upper digestive tract
def: "the region of the digestive tract extending from the mouth cavity through pharynx esophagus stomach and duodenum." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
comment: WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L. In Galen, entire GI tract excludes esophagus
subset: uberon_slim
synonym: "upper gastrointestinal tract" EXACT []
synonym: "upper GI tract" EXACT []
xref: FMA:49177
xref: galen:UpperGastrointestinalTract
xref: ncithesaurus:Upper_Gastrointestinal_Tract
xref: SCTID:181244000
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0001041 ! foregut
[Term]
id: UBERON:0004909
name: epithelium of gonad
def: "An epithelium surrounding a gonad." [OBOL:automatic]
comment: Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts
synonym: "gonad epithelium" EXACT [OBOL:automatic]
synonym: "gonadal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4032
xref: EHDAA:5931
xref: FBbt:00004859
xref: ncithesaurus:Germinal_Epithelium
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000991
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000991 ! gonad
relationship: part_of UBERON:0000991 ! gonad
[Term]
id: UBERON:0004910
name: epithelium of male gonad
def: "An epithelium surrounding a testis." [OBOL:automatic]
comment: Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts
synonym: "testis epithelium" EXACT [OBOL:automatic]
synonym: "testis sheath" NARROW SENSU [FBbt:00004955]
xref: BTO:0001364
xref: EMAPA:17973
xref: FBbt:00004955
is_a: UBERON:0004909 ! epithelium of gonad
relationship: part_of UBERON:0000473
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000473 ! testis
relationship: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0004911
name: epithelium of female gonad
def: "An epithelium surrounding an ovary." [OBOL:automatic]
comment: Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts
synonym: "ovarian epithelium" EXACT [OBOL:automatic]
synonym: "ovarian sheath" NARROW SENSU [FBbt:00004896]
synonym: "ovary epithelium" EXACT [OBOL:automatic]
xref: BTO:0003661
xref: FBbt:00004896
is_a: UBERON:0004909 ! epithelium of gonad
relationship: part_of UBERON:0000992
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000992 ! female gonad
relationship: part_of UBERON:0000992 ! female gonad
[Term]
id: UBERON:0004912
name: biliary bud
synonym: "hepatic diverticulum" RELATED [EMAPA:16561]
xref: EHDAA2:0000171
xref: EMAPA:16561
xref: EMAPA:16565
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4f/Gray1088.png/200px-Gray1088.png
xref: VHOG:0001351
is_a: UBERON:0003914 ! epithelial tube
is_a: UBERON:0009497 ! epithelium of foregut-midgut junction
relationship: develops_from UBERON:0004161 {source="EHDAA2-modified"} ! septum transversum
relationship: part_of UBERON:0006235 {source="EMAPA"} ! foregut-midgut junction
[Term]
id: UBERON:0004913
name: hepatopancreatic ampulla
def: "A dilation of the duodenal papilla that is the opening of the juncture of the common bile duct and the main pancreatic duct." [Wikipedia:Ampulla_of_Vater]
subset: vertebrate_core
synonym: "ampulla biliaropancreatica" EXACT [FMA:15076, FMA:TA]
synonym: "Ampulla hepatopancreatica, ampulla Vaterii" RELATED LATIN [Wikipedia:Ampulla_of_Vater]
synonym: "ampulla of bile duct" EXACT [FMA:15076]
synonym: "ampulla of Vater" EXACT []
synonym: "biliaropancreatic ampulla" EXACT []
synonym: "papilla duodeni major" RELATED [ZFA:0005167]
synonym: "papilla Vateri" EXACT [ZFA:0005167]
synonym: "Vater's ampulla" EXACT []
xref: FMA:15076
xref: GAID:283
xref: galen:AmpullaOfVater
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Biliary_system_new.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Biliary_system_new.svg/200px-Biliary_system_new.svg.png
xref: MESH:A.03.159.183.079.300.900
xref: ncithesaurus:Ampulla_of_Vater
xref: SCTID:362200007
xref: TAO:0005167
xref: ZFA:0005167
property_value: UBPROP:0000001 "Ampulla formed by the union of the pancreatic duct and the common bile duct where they enter the intestine.[TAO]" xsd:string
is_a: UBERON:0003928 ! digestive system duct
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001174
relationship: part_of UBERON:0004914
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001174 ! common bile duct
intersection_of: part_of UBERON:0004914 ! duodenal papilla
relationship: part_of UBERON:0001174 ! common bile duct
relationship: part_of UBERON:0004914 ! duodenal papilla
[Term]
id: UBERON:0004914
name: duodenal papilla
def: "." [Wikipedia:Major_duodenal_papilla, Wikipedia:Minor_duodenal_papilla]
synonym: "papilla duodeni major" RELATED LATIN [Wikipedia:Major_duodenal_papilla]
synonym: "papilla duodeni minor" RELATED LATIN [Wikipedia:Minor_duodenal_papilla]
synonym: "papilla of duodenum" EXACT []
xref: EMAPA:18662
xref: EMAPA:18853
xref: FMA:15953
xref: http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray1057.png/200px-Gray1057.png
xref: SCTID:245389007
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0004915
name: sphincter of hepatopancreatic ampulla
def: "muscular valve that controls the flow of digestive juices (bile and pancreatic juice) through the ampulla of Vater into the second part of the duodenum. Relaxed by the hormone Cholecystokinin (CCK) via vasoactive intestinal polypeptide (VIP).[WP]." [Wikipedia:Sphincter_of_ampulla]
synonym: "hepatopancreatic ampullary sphincter" EXACT [FMA:15077]
synonym: "musculus sphincter ampullae" EXACT [FMA:15077]
synonym: "Oddi's sphincter" EXACT []
synonym: "sphincter of ampulla of vater" EXACT [FMA:15077]
synonym: "sphincter of Oddi" EXACT []
xref: EMAPA:18663
xref: EMAPA:18854
xref: FMA:15077
xref: GAID:285
xref: http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray1057.png/200px-Gray1057.png
xref: MESH:A.03.159.183.079.300.900.600
xref: ncithesaurus:Sphincter_of_Oddi
xref: SCTID:181271000
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0011185 ! gastrointestinal sphincter
relationship: part_of UBERON:0004913
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0004913 ! hepatopancreatic ampulla
relationship: part_of UBERON:0004913 ! hepatopancreatic ampulla
[Term]
id: UBERON:0004916
name: anal sphincter
def: "A sphincter muscle in the anal part of the perineum." [OBOL:automatic]
is_a: UBERON:0004519 ! muscle of anal triangle
is_a: UBERON:0004590 ! sphincter muscle
relationship: part_of UBERON:0001353
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001353 ! anal region
relationship: part_of UBERON:0001353 ! anal region
relationship: surrounds UBERON:0001245 ! anus
[Term]
id: UBERON:0004917
name: urethral sphincter
def: "A sphincter muscle surrounding the urethra." [Wikipedia:Urethral_sphincter]
synonym: "sphincter muscle of urethra" EXACT []
synonym: "sphincter of urethra" EXACT []
synonym: "sphincter urethrae" EXACT []
synonym: "urethral sphincter muscle" EXACT []
xref: MA:0002650
xref: SCTID:277855007
xref: SCTID:277857004
is_a: UBERON:0003829 ! urethra muscle
is_a: UBERON:0004590 ! sphincter muscle
relationship: part_of UBERON:0000057
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0001556 ! lower urinary tract
[Term]
id: UBERON:0004918
name: internal urethral sphincter
def: "a urethral sphincter muscle which constricts the internal urethral orifice. It is the junction of the urethra with the urinary bladder. The muscle is made of smooth muscle, so therefore it is under involuntary control. It is kept tonically contracted by the sympathetic nervous system and during micturition, is relaxed via the parasympathetic nervous system. This is the primary muscle for preventing the release of urine[WP]." [Wikipedia:Internal_sphincter_muscle_of_urethra]
synonym: "internal sphincter muscle of urethra" EXACT []
synonym: "internal sphincter of urethra" EXACT []
synonym: "internal urethral sphincter muscle" EXACT []
synonym: "musculus sphincter supracollicularis" EXACT [FMA:45769, FMA:TA]
synonym: "musculus sphincter urethrae internus" EXACT [FMA:45769, FMA:TA]
synonym: "musculus sphincter urethrae internus" RELATED LATIN [Wikipedia:Internal_sphincter_muscle_of_urethra]
synonym: "preprostatic sphincter" EXACT [FMA:45769]
synonym: "sphincter urethrae internus" EXACT [FMA:45769, FMA:TA]
synonym: "supracollicular sphincter" EXACT [FMA:45769]
xref: FMA:45769
xref: http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray407.png
xref: SCTID:277856008
is_a: UBERON:0004917 ! urethral sphincter
relationship: has_muscle_nerve UBERON:0002013 {source="dbpedia", notes="Sympathetics from L1-L2 through lumbar splanchnic and hypogastric/pelvic plexus"} ! superior hypogastric nerve plexus
relationship: has_muscle_nerve UBERON:0005303 {source="dbpedia", notes="Sympathetics from L1-L2 through lumbar splanchnic and hypogastric/pelvic plexus"} ! hypogastric nerve
relationship: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0004919
name: external urethral sphincter
def: "." [Wikipedia:External_sphincter_muscle_of_female_urethra, Wikipedia:External_sphincter_muscle_of_male_urethra]
comment: TODO male/female subclasses
synonym: "annulus urethralis" EXACT []
synonym: "external sphincter muscle of urethra" EXACT []
synonym: "external sphincter of urethra" EXACT []
synonym: "external urethral sphincter muscle" EXACT []
synonym: "M. urethralis" EXACT [PMID:9879823]
synonym: "musculus sphincter urethrae externus urethrae femininae" RELATED LATIN [Wikipedia:External_sphincter_muscle_of_female_urethra]
synonym: "musculus sphincter urethrae externus urethrae masculinae, musculus sphincter urethrae membranaceae" RELATED LATIN [Wikipedia:External_sphincter_muscle_of_male_urethra]
synonym: "urethralis" EXACT [MA:0002401, PMID:9879823]
synonym: "urethralis muscle" EXACT [PMID:9879823]
xref: FMA:85274
xref: http://upload.wikimedia.org/wikipedia/commons/7/70/Gray1166.png
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png
xref: MA:0002401
xref: ncithesaurus:Urethralis
xref: SCTID:19101001
is_a: UBERON:0004917 ! urethral sphincter
relationship: has_muscle_origin UBERON:0001274 {source="dbpedia", notes="Junction of the inferior rami of the pubis and ischium to the extent of 1.25 to 2 cm."} ! ischium
relationship: has_muscle_origin UBERON:0001275 {source="dbpedia", notes="Junction of the inferior rami of the pubis and ischium to the extent of 1.25 to 2 cm."} ! pubis
relationship: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0004920
name: mesoderm of gonad
def: "A mesoderm that is part of a gonad [Obol]." [OBOL:automatic]
synonym: "gonad mesoderm" EXACT [OBOL:automatic]
synonym: "gonadal mesoderm" EXACT [OBOL:automatic]
is_obsolete: true
[Term]
id: UBERON:0004921
name: subdivision of digestive tract
comment: intended to denote both embryonic and adult structures. Note the FMA grouping here is not quite correct. we include pharynx, esophagus here, we may want an additional term for major subdivisions (fore/mid/hind vs upper/lower)
synonym: "alimentary system subdivision" EXACT [FMA:71131]
synonym: "subdivision of alimentary system" EXACT [FMA:71131]
xref: FBbt:00100315
xref: FMA:71131
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0011216 {source="FMA"} ! organ system subdivision
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0004922
name: postnatal subventricular zone
def: "A mitotically active layer of cells surrounding the brain ventricles in the adult that consists of migrating neuroblasts, astrocytes and transitory amplifying progenitor cells[MP]. a paired brain structure situated throughout the lateral walls of the lateral ventricles. It has been associated with having four distinct layers of variable thickness and cell density, as well as cellular composition[WP]." [Wikipedia:Subventricular_zone]
comment: todo - add layers. AO notes: in BTO:0003090 it is part of the lateral ventricle so we classify with the child term
synonym: "adult subventricular zone" EXACT [MP:0004275]
synonym: "brain subventricular zone" EXACT [MA:0000817]
synonym: "postnatal subventricular zone" EXACT [MP:0004275]
synonym: "subependymal layer" RELATED [MP:0004275]
synonym: "subependymal plate" RELATED [MP:0004275]
synonym: "subependymal zone" RELATED [MP:0004275]
synonym: "subventricular zone" EXACT [MA:0000817]
synonym: "subventricular zone of brain" EXACT []
synonym: "SVZ" EXACT []
xref: MA:0000817
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0004023 ! ganglionic eminence
relationship: part_of UBERON:0001890 {source="GO"} ! forebrain
relationship: part_of UBERON:0009953 ! post-embryonic organism
[Term]
id: UBERON:0004923
name: organ component layer
xref: FMA:82485
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0004924
name: submucosa of pharynx
def: "The tissue underlying the tunica mucosa of the pharynx." [BTO:0002113]
synonym: "pharyngeal submucosa" EXACT [FMA:75144]
synonym: "pharyngobasilar fascia" RELATED []
synonym: "pharynx submucosa" EXACT [OBOL:automatic]
synonym: "submucous coat of pharynx" RELATED [BTO:0002113]
synonym: "submucous layer of pharynx" RELATED [BTO:0002113]
synonym: "tela submucosa pharyngis" EXACT LATIN [BTO:0002113]
xref: BTO:0002113
xref: FMA:75144
xref: SCTID:19594009
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004777 ! respiratory system submucosa
relationship: part_of UBERON:0001042
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001042 ! chordate pharynx
[Term]
id: UBERON:0004925
name: submucosa of laryngopharynx
def: "A submucosa that is part of a hypopharynx [Obol]." [OBOL:automatic]
synonym: "hypopharynx submucosa" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx submucosa" EXACT [OBOL:automatic]
synonym: "laryngopharynx submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of hypopharynx" EXACT [OBOL:automatic]
synonym: "submucosa of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "tela submucosa (pars laryngea pharyngis)" EXACT [FMA:55072]
xref: FMA:55072
xref: SCTID:47496006
is_a: UBERON:0004924 ! submucosa of pharynx
relationship: part_of UBERON:0001051
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001051 ! hypopharynx
relationship: part_of UBERON:0001051 ! hypopharynx
[Term]
id: UBERON:0004926
name: submucosa of cystic duct
def: "A submucosa that is part of a cystic duct [Obol]." [OBOL:automatic]
synonym: "cystic duct submucosa" EXACT [OBOL:automatic]
synonym: "cystic ductal submucosa" EXACT [FMA:18013]
xref: FMA:18013
is_a: UBERON:0004938 ! submucosa of biliary tree
relationship: part_of UBERON:0001152
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001152 ! cystic duct
relationship: part_of UBERON:0001152 ! cystic duct
[Term]
id: UBERON:0004927
name: submucosa of cecum
def: "A submucosa that is part of a cecum [Obol]." [OBOL:automatic]
synonym: "caecum submucosa" EXACT [OBOL:automatic]
synonym: "cecum submucosa" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of caecum" EXACT [OBOL:automatic]
synonym: "submucosa of intestinum crassum caecum" EXACT [OBOL:automatic]
xref: FMA:14999
is_a: UBERON:0003331 ! submucosa of colon
relationship: part_of UBERON:0001153
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001153 ! caecum
relationship: part_of UBERON:0001153 ! caecum
[Term]
id: UBERON:0004928
name: submucosa of appendix
def: "A submucosa that is part of an appendix [Obol]." [OBOL:automatic]
synonym: "appendiceal submucosa" EXACT [FMA:14992]
synonym: "appendix submucosa" EXACT [OBOL:automatic]
synonym: "caecal appendix submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of caecal appendix" EXACT [OBOL:automatic]
synonym: "submucosa of vermiform appendix" EXACT [OBOL:automatic]
synonym: "submucosa of vermix" EXACT [OBOL:automatic]
synonym: "vermiform appendix submucosa" EXACT [OBOL:automatic]
synonym: "vermix submucosa" EXACT [OBOL:automatic]
xref: FMA:14992
xref: SCTID:86833001
is_a: UBERON:0004927 ! submucosa of cecum
relationship: part_of UBERON:0001154
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001154 ! appendix
relationship: part_of UBERON:0001154 ! appendix
[Term]
id: UBERON:0004929
name: submucosa of ascending colon
def: "A submucosa that is part of an ascending colon [Obol]." [OBOL:automatic]
synonym: "ascending colon submucosa" EXACT [OBOL:automatic]
xref: FMA:15006
is_a: UBERON:0003331 ! submucosa of colon
relationship: part_of UBERON:0001156
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001156 ! ascending colon
relationship: part_of UBERON:0001156 ! ascending colon
[Term]
id: UBERON:0004930
name: submucosa of transverse colon
def: "A submucosa that is part of a transverse colon [Obol]." [OBOL:automatic]
synonym: "transverse colon submucosa" EXACT [OBOL:automatic]
xref: FMA:15013
is_a: UBERON:0003331 ! submucosa of colon
relationship: part_of UBERON:0001157
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001157 ! transverse colon
relationship: part_of UBERON:0001157 ! transverse colon
[Term]
id: UBERON:0004931
name: submucosa of descending colon
def: "A submucosa that is part of a descending colon [Obol]." [OBOL:automatic]
synonym: "descending colon submucosa" EXACT [OBOL:automatic]
xref: FMA:15020
is_a: UBERON:0003331 ! submucosa of colon
relationship: part_of UBERON:0001158
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001158 ! descending colon
relationship: part_of UBERON:0001158 ! descending colon
[Term]
id: UBERON:0004932
name: submucosa of sigmoid colon
def: "A submucosa that is part of a sigmoid colon [Obol]." [OBOL:automatic]
synonym: "sigmoid colon submucosa" EXACT [OBOL:automatic]
xref: FMA:15027
is_a: UBERON:0003331 ! submucosa of colon
relationship: part_of UBERON:0001159
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001159 ! sigmoid colon
relationship: part_of UBERON:0001159 ! sigmoid colon
[Term]
id: UBERON:0004933
name: submucosa of fundus of stomach
def: "A submucosa that is part of a fundus of stomach [Obol]." [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) submucosa" EXACT [OBOL:automatic]
synonym: "fundus of stomach submucosa" EXACT [OBOL:automatic]
synonym: "stomach fundus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "submucosa of stomach fundus" EXACT [OBOL:automatic]
xref: FMA:17058
is_a: UBERON:0001200 ! submucosa of stomach
relationship: part_of UBERON:0001160
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001160 ! fundus of stomach
relationship: part_of UBERON:0001160 ! fundus of stomach
[Term]
id: UBERON:0004934
name: submucosa of body of stomach
def: "A submucosa that is part of a body of stomach [Obol]." [OBOL:automatic]
synonym: "body of stomach submucosa" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) submucosa" EXACT [OBOL:automatic]
synonym: "gastric body submucosa" EXACT [OBOL:automatic]
synonym: "stomach body submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "submucosa of gastric body" EXACT [OBOL:automatic]
synonym: "submucosa of stomach body" EXACT [OBOL:automatic]
xref: FMA:17059
is_a: UBERON:0001200 ! submucosa of stomach
relationship: part_of UBERON:0001161
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001161 ! body of stomach
relationship: part_of UBERON:0001161 ! body of stomach
[Term]
id: UBERON:0004935
name: submucosa of cardia of stomach
def: "A submucosa that is part of a cardia of stomach [Obol]." [OBOL:automatic]
synonym: "cardia of stomach submucosa" EXACT [OBOL:automatic]
synonym: "cardial part of stomach submucosa" EXACT [OBOL:automatic]
synonym: "gastric cardia submucosa" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) submucosa" EXACT [OBOL:automatic]
synonym: "stomach cardiac region submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "submucosa of gastric cardia" EXACT [OBOL:automatic]
synonym: "submucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "submucosa of stomach cardiac region" EXACT [OBOL:automatic]
xref: FMA:17457
is_a: UBERON:0001200 ! submucosa of stomach
relationship: part_of UBERON:0001162
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001162 ! cardia of stomach
relationship: part_of UBERON:0001162 ! cardia of stomach
[Term]
id: UBERON:0004936
name: submucosa of pyloric antrum
def: "A submucosa that is part of a pyloric antrum [Obol]." [OBOL:automatic]
synonym: "antrum of stomach submucosa" EXACT [OBOL:automatic]
synonym: "pyloric antrum submucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of antrum of stomach" EXACT [OBOL:automatic]
synonym: "submucosa of stomach pyloric antrum" EXACT [OBOL:automatic]
xref: FMA:17060
is_a: UBERON:0004937 ! submucosa of pylorus
relationship: part_of UBERON:0001165
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001165 ! pyloric antrum
relationship: part_of UBERON:0001165 ! pyloric antrum
[Term]
id: UBERON:0004937
name: submucosa of pylorus
def: "A submucosa that is part of a pylorus [Obol]." [OBOL:automatic]
synonym: "pyloric part of stomach submucosa" EXACT [OBOL:automatic]
synonym: "pylorus submucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric region submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "submucosa of stomach pyloric region" EXACT [OBOL:automatic]
xref: FMA:17462
is_a: UBERON:0001200 ! submucosa of stomach
relationship: part_of UBERON:0001166
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001166 ! pylorus
relationship: part_of UBERON:0001166 ! pylorus
[Term]
id: UBERON:0004938
name: submucosa of biliary tree
def: "A submucosa that is part of a biliary tree [Obol]." [OBOL:automatic]
synonym: "biliary tract submucosa" EXACT [OBOL:automatic]
synonym: "biliary tree submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of biliary tract" EXACT [OBOL:automatic]
xref: FMA:18009
is_a: UBERON:0000009 ! submucosa
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001173
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001173 ! biliary tree
relationship: part_of UBERON:0001173 ! biliary tree
[Term]
id: UBERON:0004939
name: submucosa of common bile duct
def: "A submucosa that is part of a common bile duct [Obol]." [OBOL:automatic]
synonym: "common bile duct submucosa" EXACT [OBOL:automatic]
synonym: "common bile ductal submucosa" EXACT [FMA:18011]
synonym: "ductus choledochus (biliaris) submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
xref: FMA:18011
is_a: UBERON:0004938 ! submucosa of biliary tree
relationship: part_of UBERON:0001174
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001174 ! common bile duct
relationship: part_of UBERON:0001174 ! common bile duct
[Term]
id: UBERON:0004940
name: submucosa of common hepatic duct
def: "A submucosa that is part of a common hepatic duct [Obol]." [OBOL:automatic]
synonym: "common hepatic duct submucosa" EXACT [OBOL:automatic]
synonym: "common hepatic ductal submucosa" EXACT [FMA:18014]
synonym: "hepatic duct submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of hepatic duct" EXACT [OBOL:automatic]
xref: FMA:18014
is_a: UBERON:0004938 ! submucosa of biliary tree
relationship: part_of UBERON:0001175
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001175 ! common hepatic duct
relationship: part_of UBERON:0001175 ! common hepatic duct
[Term]
id: UBERON:0004941
name: submucosa of right hepatic duct
def: "A submucosa that is part of a right hepatic duct [Obol]." [OBOL:automatic]
synonym: "right hepatic duct submucosa" EXACT [OBOL:automatic]
synonym: "right hepatic ductal submucosa" EXACT [FMA:18015]
xref: FMA:18015
is_a: UBERON:0004938 ! submucosa of biliary tree
relationship: part_of UBERON:0001176
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001176 ! right hepatic duct
relationship: part_of UBERON:0001176 ! right hepatic duct
[Term]
id: UBERON:0004942
name: submucosa of left hepatic duct
def: "A submucosa that is part of a left hepatic duct [Obol]." [OBOL:automatic]
synonym: "left hepatic duct submucosa" EXACT [OBOL:automatic]
synonym: "left hepatic ductal submucosa" EXACT [FMA:18017]
xref: FMA:18017
is_a: UBERON:0004938 ! submucosa of biliary tree
relationship: part_of UBERON:0001177
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001177 ! left hepatic duct
relationship: part_of UBERON:0001177 ! left hepatic duct
[Term]
id: UBERON:0004943
name: submucosa of urinary bladder
def: "The submucous layer of the wall of the urinary bladder." [BTO:0002117]
synonym: "bladder submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of bladder" EXACT [OBOL:automatic]
synonym: "submucous layer of urinary bladder" RELATED [BTO:0002117]
synonym: "tela submucosa vesicae" EXACT [FMA:15929, FMA:TA]
synonym: "tela submucosa vesicae urinariae" EXACT [BTO:0002117]
synonym: "urinary bladder submucosa" EXACT [OBOL:automatic]
xref: BTO:0002117
xref: FMA:15929
xref: SCTID:88384001
is_a: UBERON:0000009 ! submucosa
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001255
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0004944
name: submucosa of trigone of urinary bladder
def: "A submucosa that is part of a trigone of urinary bladder [Obol]." [OBOL:automatic]
synonym: "deep trigone submucosa" EXACT [OBOL:automatic]
synonym: "Lieutaud ' s trigone submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of deep trigone" EXACT [OBOL:automatic]
synonym: "submucosa of Lieutaud ' s trigone" EXACT [OBOL:automatic]
synonym: "submucosa of trigone of bladder" EXACT [OBOL:automatic]
synonym: "submucosa of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "submucosa of vesical trigone" EXACT [OBOL:automatic]
synonym: "trigone of bladder submucosa" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder submucosa" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone submucosa" EXACT [OBOL:automatic]
synonym: "vesical trigone submucosa" EXACT [OBOL:automatic]
xref: FMA:17852
is_a: UBERON:0004943 ! submucosa of urinary bladder
relationship: part_of UBERON:0001257
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder
relationship: part_of UBERON:0001257 ! trigone of urinary bladder
[Term]
id: UBERON:0004945
name: submucosa of neck of urinary bladder
def: "A submucosa that is part of a neck of urinary bladder [Obol]." [OBOL:automatic]
synonym: "bladder neck submucosa" EXACT [OBOL:automatic]
synonym: "neck of bladder submucosa" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of bladder neck" EXACT [OBOL:automatic]
synonym: "submucosa of neck of bladder" EXACT [OBOL:automatic]
synonym: "submucosa of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "submucosa of vesical neck" EXACT [OBOL:automatic]
synonym: "urinary bladder neck submucosa" EXACT [OBOL:automatic]
synonym: "vesical neck submucosa" EXACT [OBOL:automatic]
xref: FMA:17851
is_a: UBERON:0004943 ! submucosa of urinary bladder
relationship: part_of UBERON:0001258
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001258 ! neck of urinary bladder
relationship: part_of UBERON:0001258 ! neck of urinary bladder
[Term]
id: UBERON:0004946
name: submucosa of ileum
def: "A submucosa that is part of a ileum [Obol]." [OBOL:automatic]
synonym: "ileal submucosa" EXACT [FMA:14957]
synonym: "ileum submucosa" EXACT [OBOL:automatic]
xref: FMA:14957
xref: SCTID:65374006
is_a: UBERON:0001205 ! submucosa of small intestine
relationship: part_of UBERON:0002116
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002116 ! ileum
relationship: part_of UBERON:0002116 ! ileum
[Term]
id: UBERON:0004947
name: submucosa of right main bronchus
def: "A submucosa that is part of a right main bronchus [Obol]." [OBOL:automatic]
synonym: "right bronchus submucosa" EXACT [OBOL:automatic]
synonym: "right main bronchial submucosa" EXACT [FMA:13139]
synonym: "right main bronchus submucosa" EXACT [OBOL:automatic]
synonym: "right principal bronchus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of right bronchus" EXACT [OBOL:automatic]
synonym: "submucosa of right principal bronchus" EXACT [OBOL:automatic]
xref: FMA:13139
is_a: UBERON:0004949 ! submucosa of main bronchus
relationship: part_of UBERON:0002177
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002177 ! right main bronchus
relationship: part_of UBERON:0002177 ! right main bronchus
[Term]
id: UBERON:0004948
name: submucosa of left main bronchus
def: "A submucosa that is part of a left main bronchus [Obol]." [OBOL:automatic]
synonym: "left bronchus submucosa" EXACT [OBOL:automatic]
synonym: "left main bronchial submucosa" EXACT [FMA:13140]
synonym: "left main bronchus submucosa" EXACT [OBOL:automatic]
synonym: "left principal bronchus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of left bronchus" EXACT [OBOL:automatic]
synonym: "submucosa of left principal bronchus" EXACT [OBOL:automatic]
xref: FMA:13140
is_a: UBERON:0004949 ! submucosa of main bronchus
relationship: part_of UBERON:0002178
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002178 ! left main bronchus
relationship: part_of UBERON:0002178 ! left main bronchus
[Term]
id: UBERON:0004949
name: submucosa of main bronchus
def: "A submucosa that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "bronchus principalis submucosa" EXACT [OBOL:automatic]
synonym: "main bronchial submucosa" EXACT [FMA:13118]
synonym: "main bronchus submucosa" EXACT [OBOL:automatic]
synonym: "primary bronchus submucosa" EXACT [OBOL:automatic]
synonym: "principal bronchus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of bronchus principalis" EXACT [OBOL:automatic]
synonym: "submucosa of primary bronchus" EXACT [OBOL:automatic]
synonym: "submucosa of principal bronchus" EXACT [OBOL:automatic]
xref: FMA:13118
is_a: UBERON:0001957 ! submucosa of bronchus
relationship: part_of UBERON:0002182
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0004950
name: submucosa of lobar bronchus
def: "A submucosa that is part of a lobar bronchus [Obol]." [OBOL:automatic]
synonym: "lobar bronchial submucosa" EXACT [FMA:62669]
synonym: "lobar bronchus submucosa" EXACT [OBOL:automatic]
synonym: "secondary bronchus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of secondary bronchus" EXACT [OBOL:automatic]
xref: FMA:62669
is_a: UBERON:0001957 ! submucosa of bronchus
relationship: part_of UBERON:0002183
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002183 ! lobar bronchus
relationship: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0004951
name: submucosa of segmental bronchus
def: "A submucosa that is part of a segmental bronchus [Obol]." [OBOL:automatic]
synonym: "segmental bronchial submucosa" EXACT [FMA:62670]
synonym: "segmental bronchus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "tertiary bronchus submucosa" EXACT [OBOL:automatic]
xref: FMA:62670
is_a: UBERON:0001957 ! submucosa of bronchus
relationship: part_of UBERON:0002184
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002184 ! segmental bronchus
relationship: part_of UBERON:0002184 ! segmental bronchus
[Term]
id: UBERON:0004952
name: submucosa of bronchiole
def: "A submucosa that is part of a bronchiole [Obol]." [OBOL:automatic]
synonym: "bronchiole submucosa" EXACT [OBOL:automatic]
synonym: "lobular bronchiole submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of lobular bronchiole" EXACT [OBOL:automatic]
xref: FMA:62775
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004777 ! respiratory system submucosa
relationship: part_of UBERON:0002186
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002186 ! bronchiole
relationship: part_of UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0004980
name: mucosa of ureter
def: "A mucosa that is part of a ureter [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of ureter" EXACT [OBOL:automatic]
synonym: "mucosal layer of ureter" EXACT [FMA:15894]
synonym: "mucous membrane of ureter" EXACT [OBOL:automatic]
synonym: "organ mucosa of ureter" EXACT [OBOL:automatic]
synonym: "tunica mucosa (ureter)" EXACT [FMA:15894]
synonym: "tunica mucosa ureteris" EXACT [FMA:15894, FMA:TA]
synonym: "ureter mucosa" EXACT [OBOL:automatic]
synonym: "ureter mucosa of organ" EXACT [OBOL:automatic]
synonym: "ureter mucous membrane" EXACT [OBOL:automatic]
synonym: "ureter organ mucosa" EXACT [OBOL:automatic]
synonym: "ureteral mucosa" EXACT [FMA:15894]
synonym: "ureteric mucosa" EXACT [FMA:15894]
xref: FMA:15894
xref: galen:MucousMembraneOfUreter
xref: SCTID:40476001
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000056
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0000056 ! ureter
[Term]
id: UBERON:0004982
name: mucosa of epiglottis
def: "A mucosa that is part of a epiglottis [Obol]." [OBOL:automatic]
synonym: "epiglottis mucosa" EXACT [OBOL:automatic]
synonym: "epiglottis mucosa of organ" EXACT [OBOL:automatic]
synonym: "epiglottis mucous membrane" EXACT [OBOL:automatic]
synonym: "epiglottis organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of epiglottis" EXACT [OBOL:automatic]
synonym: "mucous membrane of epiglottis" EXACT [OBOL:automatic]
synonym: "organ mucosa of epiglottis" EXACT [OBOL:automatic]
xref: FMA:64015
xref: SCTID:156751001
is_a: UBERON:0004987 ! mucosa of laryngopharynx
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0000388
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000388 ! epiglottis
relationship: part_of UBERON:0000388 ! epiglottis
[Term]
id: UBERON:0004983
name: mucosa of vagina
def: "A mucosa that is part of a vagina [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of vagina" EXACT [OBOL:automatic]
synonym: "mucous membrane of vagina" EXACT [OBOL:automatic]
synonym: "organ mucosa of vagina" EXACT [OBOL:automatic]
synonym: "tunica mucosa vaginae" EXACT [FMA:19975, FMA:TA]
synonym: "vagina mucosa" EXACT [OBOL:automatic]
synonym: "vagina mucosa of organ" EXACT [OBOL:automatic]
synonym: "vagina mucous membrane" EXACT [OBOL:automatic]
synonym: "vagina organ mucosa" EXACT [OBOL:automatic]
synonym: "vaginal mucosa" EXACT [FMA:19975]
xref: FMA:19975
xref: SCTID:362245006
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000996
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0004984
name: mucosa of seminal vesicle
def: "A mucosa that is part of a seminal vesicle [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of seminal gland" EXACT [OBOL:automatic]
synonym: "mucosa of organ of seminal vesicle" EXACT [OBOL:automatic]
synonym: "mucosa of seminal gland" EXACT [OBOL:automatic]
synonym: "mucous membrane of seminal gland" EXACT [OBOL:automatic]
synonym: "mucous membrane of seminal vesicle" EXACT [OBOL:automatic]
synonym: "organ mucosa of seminal gland" EXACT [OBOL:automatic]
synonym: "organ mucosa of seminal vesicle" EXACT [OBOL:automatic]
synonym: "seminal gland mucosa" EXACT [OBOL:automatic]
synonym: "seminal gland mucosa of organ" EXACT [OBOL:automatic]
synonym: "seminal gland mucous membrane" EXACT [OBOL:automatic]
synonym: "seminal gland organ mucosa" EXACT [OBOL:automatic]
synonym: "seminal vesicle mucosa" EXACT [OBOL:automatic]
synonym: "seminal vesicle mucosa of organ" EXACT [OBOL:automatic]
synonym: "seminal vesicle mucous membrane" EXACT [OBOL:automatic]
synonym: "seminal vesicle organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa glandulae vesiculosae" EXACT [FMA:19405, FMA:TA]
xref: FMA:19405
xref: SCTID:252260007
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000998
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000998 ! seminal vesicle
relationship: part_of UBERON:0000998 ! seminal vesicle
[Term]
id: UBERON:0004985
name: mucosa of ejaculatory duct
def: "A mucosa that is part of a ejaculatory duct [Obol]." [OBOL:automatic]
synonym: "ejaculatory duct mucosa" EXACT [OBOL:automatic]
synonym: "ejaculatory duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "ejaculatory duct mucous membrane" EXACT [OBOL:automatic]
synonym: "ejaculatory duct organ mucosa" EXACT [OBOL:automatic]
synonym: "ejaculatory ductal mucosa" EXACT [FMA:19373]
synonym: "mucosa of organ of ejaculatory duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of ejaculatory duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of ejaculatory duct" EXACT [OBOL:automatic]
xref: FMA:19373
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000999
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000999 ! ejaculatory duct
relationship: part_of UBERON:0000999 ! ejaculatory duct
[Term]
id: UBERON:0004986
name: mucosa of deferent duct
def: "A mucosa that is part of a vas deferens [Obol]." [OBOL:automatic]
synonym: "deferent duct mucosa" EXACT [OBOL:automatic]
synonym: "deferent duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "deferent duct mucous membrane" EXACT [OBOL:automatic]
synonym: "deferent duct organ mucosa" EXACT [OBOL:automatic]
synonym: "deferent ductal mucosa" EXACT [FMA:19240]
synonym: "ductus deferens mucosa" EXACT [OBOL:automatic]
synonym: "ductus deferens mucosa of organ" EXACT [OBOL:automatic]
synonym: "ductus deferens mucous membrane" EXACT [OBOL:automatic]
synonym: "ductus deferens organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of ductus deferens" EXACT [OBOL:automatic]
synonym: "mucosa of organ of deferent duct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ductus deferens" EXACT [OBOL:automatic]
synonym: "mucosa of organ of sperm duct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vas deferen" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vas deferens" EXACT [OBOL:automatic]
synonym: "mucosa of sperm duct" EXACT [OBOL:automatic]
synonym: "mucosa of vas deferen" EXACT [OBOL:automatic]
synonym: "mucosa of vas deferens" EXACT [OBOL:automatic]
synonym: "mucous membrane of deferent duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of ductus deferens" EXACT [OBOL:automatic]
synonym: "mucous membrane of sperm duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of vas deferen" EXACT [OBOL:automatic]
synonym: "mucous membrane of vas deferens" EXACT [OBOL:automatic]
synonym: "organ mucosa of deferent duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of ductus deferens" EXACT [OBOL:automatic]
synonym: "organ mucosa of sperm duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of vas deferen" EXACT [OBOL:automatic]
synonym: "organ mucosa of vas deferens" EXACT [OBOL:automatic]
synonym: "sperm duct mucosa" EXACT [OBOL:automatic]
synonym: "sperm duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "sperm duct mucous membrane" EXACT [OBOL:automatic]
synonym: "sperm duct organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa (ductus deferens)" EXACT [FMA:19240]
synonym: "tunica mucosa ductus deferentis" EXACT [FMA:19240, FMA:TA]
synonym: "vas deferen mucosa" EXACT [OBOL:automatic]
synonym: "vas deferen mucosa of organ" EXACT [OBOL:automatic]
synonym: "vas deferen mucous membrane" EXACT [OBOL:automatic]
synonym: "vas deferen organ mucosa" EXACT [OBOL:automatic]
synonym: "vas deferens mucosa" EXACT [OBOL:automatic]
synonym: "vas deferens mucosa of organ" EXACT [OBOL:automatic]
synonym: "vas deferens mucous membrane" EXACT [OBOL:automatic]
synonym: "vas deferens organ mucosa" EXACT [OBOL:automatic]
xref: FMA:19240
xref: SCTID:299626000
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001000
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001000 ! vas deferens
relationship: part_of UBERON:0001000 ! vas deferens
[Term]
id: UBERON:0004987
name: mucosa of laryngopharynx
def: "A mucosa that is part of a hypopharynx [Obol]." [OBOL:automatic]
synonym: "hypopharynx mucosa" EXACT [OBOL:automatic]
synonym: "hypopharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "hypopharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "hypopharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx mucosa" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "laryngopharynx mucosa" EXACT [OBOL:automatic]
synonym: "laryngopharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "laryngopharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "laryngopharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of hypopharynx" EXACT [OBOL:automatic]
synonym: "mucosa of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of hypopharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of laryngopharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of hypopharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of laryngopharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of hypopharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of laryngopharynx" EXACT [OBOL:automatic]
xref: FMA:55030
xref: SCTID:362126008
is_a: UBERON:0000355 ! pharyngeal mucosa
relationship: part_of UBERON:0001051
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001051 ! hypopharynx
relationship: part_of UBERON:0001051 ! hypopharynx
[Term]
id: UBERON:0004988
name: mucosa of cystic duct
def: "A mucosa that is part of a cystic duct [Obol]." [OBOL:automatic]
synonym: "cystic duct mucosa" EXACT [OBOL:automatic]
synonym: "cystic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "cystic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "cystic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "cystic ductal mucosa" EXACT [FMA:14690]
synonym: "mucosa of organ of cystic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of cystic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of cystic duct" EXACT [OBOL:automatic]
xref: FMA:14690
is_a: UBERON:0004999 ! mucosa of biliary tree
relationship: part_of UBERON:0001152
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001152 ! cystic duct
relationship: part_of UBERON:0001152 ! cystic duct
[Term]
id: UBERON:0004989
name: mucosa of appendix
def: "A mucosa that is part of an appendix [Obol]." [OBOL:automatic]
synonym: "appendiceal mucous membrane" EXACT [FMA:14991]
synonym: "appendix mucosa" EXACT [OBOL:automatic]
synonym: "appendix mucosa of organ" EXACT [OBOL:automatic]
synonym: "appendix mucous membrane" EXACT [OBOL:automatic]
synonym: "appendix organ mucosa" EXACT [OBOL:automatic]
synonym: "caecal appendix mucosa" EXACT [OBOL:automatic]
synonym: "caecal appendix mucosa of organ" EXACT [OBOL:automatic]
synonym: "caecal appendix mucous membrane" EXACT [OBOL:automatic]
synonym: "caecal appendix organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of caecal appendix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of appendix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of caecal appendix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vermiform appendix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vermix" EXACT [OBOL:automatic]
synonym: "mucosa of vermiform appendix" EXACT [OBOL:automatic]
synonym: "mucosa of vermix" EXACT [OBOL:automatic]
synonym: "mucous membrane of appendix" EXACT [OBOL:automatic]
synonym: "mucous membrane of caecal appendix" EXACT [OBOL:automatic]
synonym: "mucous membrane of vermiform appendix" EXACT [OBOL:automatic]
synonym: "mucous membrane of vermix" EXACT [OBOL:automatic]
synonym: "organ mucosa of appendix" EXACT [OBOL:automatic]
synonym: "organ mucosa of caecal appendix" EXACT [OBOL:automatic]
synonym: "organ mucosa of vermiform appendix" EXACT [OBOL:automatic]
synonym: "organ mucosa of vermix" EXACT [OBOL:automatic]
synonym: "vermiform appendix mucosa" EXACT [OBOL:automatic]
synonym: "vermiform appendix mucosa of organ" EXACT [OBOL:automatic]
synonym: "vermiform appendix mucous membrane" EXACT [OBOL:automatic]
synonym: "vermiform appendix organ mucosa" EXACT [OBOL:automatic]
synonym: "vermix mucosa" EXACT [OBOL:automatic]
synonym: "vermix mucosa of organ" EXACT [OBOL:automatic]
synonym: "vermix mucous membrane" EXACT [OBOL:automatic]
synonym: "vermix organ mucosa" EXACT [OBOL:automatic]
xref: FMA:14991
xref: SCTID:362155000
is_a: UBERON:0000314 ! cecum mucosa
relationship: part_of UBERON:0001154
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001154 ! appendix
relationship: part_of UBERON:0001154 ! appendix
[Term]
id: UBERON:0004990
name: mucosa of ascending colon
def: "A mucosa that is part of an ascending colon [Obol]." [OBOL:automatic]
synonym: "ascending colon mucosa" EXACT [OBOL:automatic]
synonym: "ascending colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "ascending colon mucous membrane" EXACT [OBOL:automatic]
synonym: "ascending colon organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ascending colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of ascending colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of ascending colon" EXACT [OBOL:automatic]
xref: FMA:15005
is_a: UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0001156
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001156 ! ascending colon
relationship: part_of UBERON:0001156 ! ascending colon
[Term]
id: UBERON:0004991
name: mucosa of transverse colon
def: "A mucosa that is part of a transverse colon [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of transverse colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of transverse colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of transverse colon" EXACT [OBOL:automatic]
synonym: "transverse colon mucosa" EXACT [OBOL:automatic]
synonym: "transverse colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "transverse colon mucous membrane" EXACT [OBOL:automatic]
synonym: "transverse colon organ mucosa" EXACT [OBOL:automatic]
xref: FMA:15012
is_a: UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0001157
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001157 ! transverse colon
relationship: part_of UBERON:0001157 ! transverse colon
[Term]
id: UBERON:0004992
name: mucosa of descending colon
def: "A mucosa that is part of a descending colon [Obol]." [OBOL:automatic]
synonym: "descending colon mucosa" EXACT [OBOL:automatic]
synonym: "descending colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "descending colon mucous membrane" EXACT [OBOL:automatic]
synonym: "descending colon organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of descending colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of descending colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of descending colon" EXACT [OBOL:automatic]
xref: FMA:15019
is_a: UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0001158
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001158 ! descending colon
relationship: part_of UBERON:0001158 ! descending colon
[Term]
id: UBERON:0004993
name: mucosa of sigmoid colon
def: "A mucosa that is part of a sigmoid colon [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of sigmoid colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of sigmoid colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of sigmoid colon" EXACT [OBOL:automatic]
synonym: "sigmoid colon mucosa" EXACT [OBOL:automatic]
synonym: "sigmoid colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "sigmoid colon mucous membrane" EXACT [OBOL:automatic]
synonym: "sigmoid colon organ mucosa" EXACT [OBOL:automatic]
xref: FMA:15026
is_a: UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0001159
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001159 ! sigmoid colon
relationship: part_of UBERON:0001159 ! sigmoid colon
[Term]
id: UBERON:0004994
name: mucosa of fundus of stomach
def: "A mucosa that is part of a fundus of stomach [Obol]." [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) mucosa" EXACT [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) mucosa of organ" EXACT [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) mucous membrane" EXACT [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) organ mucosa" EXACT [OBOL:automatic]
synonym: "fundus of stomach mucosa" EXACT [OBOL:automatic]
synonym: "fundus of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "fundus of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "fundus of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of fundus of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach fundus" EXACT [OBOL:automatic]
synonym: "mucosa of stomach fundus" EXACT [OBOL:automatic]
synonym: "mucous membrane of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "mucous membrane of fundus of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach fundus" EXACT [OBOL:automatic]
synonym: "organ mucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "organ mucosa of fundus of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach fundus" EXACT [OBOL:automatic]
synonym: "stomach fundus mucosa" EXACT [OBOL:automatic]
synonym: "stomach fundus mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach fundus mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach fundus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17053
is_a: UBERON:0001199 ! mucosa of stomach
relationship: part_of UBERON:0001160
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001160 ! fundus of stomach
relationship: part_of UBERON:0001160 ! fundus of stomach
[Term]
id: UBERON:0004995
name: mucosa of body of stomach
def: "A mucosa that is part of a body of stomach [Obol]." [OBOL:automatic]
synonym: "body of stomach mucosa" EXACT [OBOL:automatic]
synonym: "body of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "body of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "body of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) mucosa" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) mucosa of organ" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) mucous membrane" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) organ mucosa" EXACT [OBOL:automatic]
synonym: "gastric body mucosa" EXACT [OBOL:automatic]
synonym: "gastric body mucosa of organ" EXACT [OBOL:automatic]
synonym: "gastric body mucous membrane" EXACT [OBOL:automatic]
synonym: "gastric body organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "mucosa of gastric body" EXACT [OBOL:automatic]
synonym: "mucosa of organ of body of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gastric body" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach body" EXACT [OBOL:automatic]
synonym: "mucosa of stomach body" EXACT [OBOL:automatic]
synonym: "mucous membrane of body of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "mucous membrane of gastric body" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach body" EXACT [OBOL:automatic]
synonym: "organ mucosa of body of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "organ mucosa of gastric body" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach body" EXACT [OBOL:automatic]
synonym: "stomach body mucosa" EXACT [OBOL:automatic]
synonym: "stomach body mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach body mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach body organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17054
is_a: UBERON:0001199 ! mucosa of stomach
relationship: part_of UBERON:0001161
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001161 ! body of stomach
relationship: part_of UBERON:0001161 ! body of stomach
[Term]
id: UBERON:0004996
name: mucosa of cardia of stomach
def: "A mucosa that is part of a cardia of stomach [Obol]." [OBOL:automatic]
synonym: "cardia of stomach mucosa" EXACT [OBOL:automatic]
synonym: "cardia of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "cardia of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "cardia of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "cardial part of stomach mucosa" EXACT [OBOL:automatic]
synonym: "cardial part of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "cardial part of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "cardial part of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "gastric cardia mucosa" EXACT [OBOL:automatic]
synonym: "gastric cardia mucosa of organ" EXACT [OBOL:automatic]
synonym: "gastric cardia mucous membrane" EXACT [OBOL:automatic]
synonym: "gastric cardia organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of gastric cardia" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cardia of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gastric cardia" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "mucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "mucosa of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "mucous membrane of cardia of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of gastric cardia" EXACT [OBOL:automatic]
synonym: "mucous membrane of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "organ mucosa of cardia of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of gastric cardia" EXACT [OBOL:automatic]
synonym: "organ mucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) mucosa" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) mucosa of organ" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) mucous membrane" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) organ mucosa" EXACT [OBOL:automatic]
synonym: "stomach cardiac region mucosa" EXACT [OBOL:automatic]
synonym: "stomach cardiac region mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach cardiac region mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach cardiac region organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17456
is_a: UBERON:0001199 ! mucosa of stomach
relationship: part_of UBERON:0001162
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001162 ! cardia of stomach
relationship: part_of UBERON:0001162 ! cardia of stomach
[Term]
id: UBERON:0004997
name: mucosa of pyloric antrum
def: "A mucosa that is part of a pyloric antrum [Obol]." [OBOL:automatic]
synonym: "antrum of stomach mucosa" EXACT [OBOL:automatic]
synonym: "antrum of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "antrum of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "antrum of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of antrum of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of antrum of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pyloric antrum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach pyloric antrum" EXACT [OBOL:automatic]
synonym: "mucosa of stomach pyloric antrum" EXACT [OBOL:automatic]
synonym: "mucous membrane of antrum of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of pyloric antrum" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach pyloric antrum" EXACT [OBOL:automatic]
synonym: "organ mucosa of antrum of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of pyloric antrum" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach pyloric antrum" EXACT [OBOL:automatic]
synonym: "pyloric antrum mucosa" EXACT [OBOL:automatic]
synonym: "pyloric antrum mucosa of organ" EXACT [OBOL:automatic]
synonym: "pyloric antrum mucous membrane" EXACT [OBOL:automatic]
synonym: "pyloric antrum organ mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17055
is_a: UBERON:0004998 ! mucosa of pylorus
relationship: part_of UBERON:0001165
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001165 ! pyloric antrum
relationship: part_of UBERON:0001165 ! pyloric antrum
[Term]
id: UBERON:0004998
name: mucosa of pylorus
def: "A mucosa that is part of a pylorus [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pylorus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "mucosa of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "mucous membrane of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of pylorus" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "organ mucosa of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of pylorus" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach mucosa" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "pylorus mucosa" EXACT [OBOL:automatic]
synonym: "pylorus mucosa of organ" EXACT [OBOL:automatic]
synonym: "pylorus mucous membrane" EXACT [OBOL:automatic]
synonym: "pylorus organ mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric region mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric region mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach pyloric region mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach pyloric region organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17461
is_a: UBERON:0001199 ! mucosa of stomach
relationship: part_of UBERON:0001166
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001166 ! pylorus
relationship: part_of UBERON:0001166 ! pylorus
[Term]
id: UBERON:0004999
name: mucosa of biliary tree
def: "A mucosa that is part of a biliary tree [Obol]." [OBOL:automatic]
synonym: "biliary tract mucosa" EXACT [OBOL:automatic]
synonym: "biliary tract mucosa of organ" EXACT [OBOL:automatic]
synonym: "biliary tract mucous membrane" EXACT [OBOL:automatic]
synonym: "biliary tract organ mucosa" EXACT [OBOL:automatic]
synonym: "biliary tree mucosa" EXACT [OBOL:automatic]
synonym: "biliary tree mucosa of organ" EXACT [OBOL:automatic]
synonym: "biliary tree mucous membrane" EXACT [OBOL:automatic]
synonym: "biliary tree organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of biliary tract" EXACT [OBOL:automatic]
synonym: "mucosa of organ of biliary tract" EXACT [OBOL:automatic]
synonym: "mucosa of organ of biliary tree" EXACT [OBOL:automatic]
synonym: "mucous membrane of biliary tract" EXACT [OBOL:automatic]
synonym: "mucous membrane of biliary tree" EXACT [OBOL:automatic]
synonym: "organ mucosa of biliary tract" EXACT [OBOL:automatic]
synonym: "organ mucosa of biliary tree" EXACT [OBOL:automatic]
xref: FMA:14695
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001173
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001173 ! biliary tree
relationship: part_of UBERON:0001173 ! biliary tree
[Term]
id: UBERON:0005000
name: mucosa of common bile duct
def: "A mucosa that is part of a common bile duct [Obol]." [OBOL:automatic]
synonym: "common bile duct mucosa" EXACT [OBOL:automatic]
synonym: "common bile duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "common bile duct mucous membrane" EXACT [OBOL:automatic]
synonym: "common bile duct organ mucosa" EXACT [OBOL:automatic]
synonym: "common bile ductal mucosa" EXACT [FMA:14688]
synonym: "ductus choledochus (biliaris) mucosa" EXACT [OBOL:automatic]
synonym: "ductus choledochus (biliaris) mucosa of organ" EXACT [OBOL:automatic]
synonym: "ductus choledochus (biliaris) mucous membrane" EXACT [OBOL:automatic]
synonym: "ductus choledochus (biliaris) organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of common bile duct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
synonym: "mucous membrane of common bile duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
synonym: "organ mucosa of common bile duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
xref: FMA:14688
is_a: UBERON:0004999 ! mucosa of biliary tree
relationship: part_of UBERON:0001174
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001174 ! common bile duct
relationship: part_of UBERON:0001174 ! common bile duct
[Term]
id: UBERON:0005001
name: mucosa of common hepatic duct
def: "A mucosa that is part of a common hepatic duct [Obol]." [OBOL:automatic]
synonym: "common hepatic duct mucosa" EXACT [OBOL:automatic]
synonym: "common hepatic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "common hepatic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "common hepatic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "common hepatic ductal mucosa" EXACT [FMA:14691]
synonym: "hepatic duct mucosa" EXACT [OBOL:automatic]
synonym: "hepatic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "hepatic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "hepatic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of hepatic duct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of common hepatic duct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of hepatic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of common hepatic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of hepatic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of common hepatic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of hepatic duct" EXACT [OBOL:automatic]
xref: FMA:14691
is_a: UBERON:0004999 ! mucosa of biliary tree
relationship: part_of UBERON:0001175
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001175 ! common hepatic duct
relationship: part_of UBERON:0001175 ! common hepatic duct
[Term]
id: UBERON:0005002
name: mucosa of right hepatic duct
def: "A mucosa that is part of a right hepatic duct [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of right hepatic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of right hepatic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of right hepatic duct" EXACT [OBOL:automatic]
synonym: "right hepatic duct mucosa" EXACT [OBOL:automatic]
synonym: "right hepatic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "right hepatic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "right hepatic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "right hepatic ductal mucosa" EXACT [FMA:14692]
xref: FMA:14692
is_a: UBERON:0004999 ! mucosa of biliary tree
relationship: part_of UBERON:0001176
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001176 ! right hepatic duct
relationship: part_of UBERON:0001176 ! right hepatic duct
[Term]
id: UBERON:0005003
name: mucosa of left hepatic duct
def: "A mucosa that is part of a left hepatic duct [Obol]." [OBOL:automatic]
synonym: "left hepatic duct mucosa" EXACT [OBOL:automatic]
synonym: "left hepatic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "left hepatic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "left hepatic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "left hepatic ductal mucosa" EXACT [FMA:14693]
synonym: "mucosa of organ of left hepatic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of left hepatic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of left hepatic duct" EXACT [OBOL:automatic]
xref: FMA:14693
is_a: UBERON:0004999 ! mucosa of biliary tree
relationship: part_of UBERON:0001177
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001177 ! left hepatic duct
relationship: part_of UBERON:0001177 ! left hepatic duct
[Term]
id: UBERON:0005004
name: mucosa of right ureter
def: "A mucosa that is part of a right ureter [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of right ureter" EXACT [OBOL:automatic]
synonym: "mucous membrane of right ureter" EXACT [OBOL:automatic]
synonym: "organ mucosa of right ureter" EXACT [OBOL:automatic]
synonym: "right ureter mucosa" EXACT [OBOL:automatic]
synonym: "right ureter mucosa of organ" EXACT [OBOL:automatic]
synonym: "right ureter mucous membrane" EXACT [OBOL:automatic]
synonym: "right ureter organ mucosa" EXACT [OBOL:automatic]
synonym: "right ureteral mucosa" EXACT [FMA:17806]
xref: FMA:17806
is_a: UBERON:0004980 ! mucosa of ureter
relationship: part_of UBERON:0001222
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001222 ! right ureter
relationship: part_of UBERON:0001222 ! right ureter
[Term]
id: UBERON:0005005
name: mucosa of left ureter
def: "A mucosa that is part of a left ureter [Obol]." [OBOL:automatic]
synonym: "left ureter mucosa" EXACT [OBOL:automatic]
synonym: "left ureter mucosa of organ" EXACT [OBOL:automatic]
synonym: "left ureter mucous membrane" EXACT [OBOL:automatic]
synonym: "left ureter organ mucosa" EXACT [OBOL:automatic]
synonym: "left ureteral mucosa" EXACT [FMA:17807]
synonym: "mucosa of organ of left ureter" EXACT [OBOL:automatic]
synonym: "mucous membrane of left ureter" EXACT [OBOL:automatic]
synonym: "organ mucosa of left ureter" EXACT [OBOL:automatic]
xref: FMA:17807
is_a: UBERON:0004980 ! mucosa of ureter
relationship: part_of UBERON:0001223
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001223 ! left ureter
relationship: part_of UBERON:0001223 ! left ureter
[Term]
id: UBERON:0005006
name: mucosa of renal pelvis
def: "A mucosa that is part of a renal pelvis [Obol]." [OBOL:automatic]
synonym: "kidney pelvis mucosa" EXACT [OBOL:automatic]
synonym: "kidney pelvis mucosa of organ" EXACT [OBOL:automatic]
synonym: "kidney pelvis mucous membrane" EXACT [OBOL:automatic]
synonym: "kidney pelvis organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of kidney pelvis" EXACT [OBOL:automatic]
synonym: "mucosa of organ of kidney pelvis" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "mucosa of organ of renal pelvis" EXACT [OBOL:automatic]
synonym: "mucosa of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "mucous membrane of kidney pelvis" EXACT [OBOL:automatic]
synonym: "mucous membrane of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "mucous membrane of renal pelvis" EXACT [OBOL:automatic]
synonym: "organ mucosa of kidney pelvis" EXACT [OBOL:automatic]
synonym: "organ mucosa of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "organ mucosa of renal pelvis" EXACT [OBOL:automatic]
synonym: "pelvis of ureter mucosa" EXACT [OBOL:automatic]
synonym: "pelvis of ureter mucosa of organ" EXACT [OBOL:automatic]
synonym: "pelvis of ureter mucous membrane" EXACT [OBOL:automatic]
synonym: "pelvis of ureter organ mucosa" EXACT [OBOL:automatic]
synonym: "renal pelvic mucosa" EXACT [FMA:17931]
synonym: "renal pelvis mucosa" EXACT [OBOL:automatic]
synonym: "renal pelvis mucosa of organ" EXACT [OBOL:automatic]
synonym: "renal pelvis mucous membrane" EXACT [OBOL:automatic]
synonym: "renal pelvis organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa pelvis renalis" EXACT [FMA:17931, FMA:TA]
xref: FMA:17931
xref: SCTID:243482002
is_a: UBERON:0004980 ! mucosa of ureter
relationship: part_of UBERON:0001224
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001224 ! renal pelvis
relationship: part_of UBERON:0001224 ! renal pelvis
[Term]
id: UBERON:0005007
name: mucosa of major calyx
def: "A mucosa that is part of a major calyx [Obol]." [OBOL:automatic]
synonym: "major calix mucosa" EXACT [OBOL:automatic]
synonym: "major calix mucosa of organ" EXACT [OBOL:automatic]
synonym: "major calix mucous membrane" EXACT [OBOL:automatic]
synonym: "major calix organ mucosa" EXACT [OBOL:automatic]
synonym: "major calyx mucosa" EXACT [OBOL:automatic]
synonym: "major calyx mucosa of organ" EXACT [OBOL:automatic]
synonym: "major calyx mucous membrane" EXACT [OBOL:automatic]
synonym: "major calyx organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of major calix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of major calix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of major calyx" EXACT [OBOL:automatic]
synonym: "mucous membrane of major calix" EXACT [OBOL:automatic]
synonym: "mucous membrane of major calyx" EXACT [OBOL:automatic]
synonym: "organ mucosa of major calix" EXACT [OBOL:automatic]
synonym: "organ mucosa of major calyx" EXACT [OBOL:automatic]
xref: FMA:17934
is_a: UBERON:0005006 ! mucosa of renal pelvis
relationship: part_of UBERON:0001226
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001226 ! major calyx
relationship: part_of UBERON:0001226 ! major calyx
[Term]
id: UBERON:0005008
name: mucosa of minor calyx
def: "A mucosa that is part of a minor calyx [Obol]." [OBOL:automatic]
synonym: "minor calix mucosa" EXACT [OBOL:automatic]
synonym: "minor calix mucosa of organ" EXACT [OBOL:automatic]
synonym: "minor calix mucous membrane" EXACT [OBOL:automatic]
synonym: "minor calix organ mucosa" EXACT [OBOL:automatic]
synonym: "minor calyx mucosa" EXACT [OBOL:automatic]
synonym: "minor calyx mucosa of organ" EXACT [OBOL:automatic]
synonym: "minor calyx mucous membrane" EXACT [OBOL:automatic]
synonym: "minor calyx organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of minor calix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of minor calix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of minor calyx" EXACT [OBOL:automatic]
synonym: "mucous membrane of minor calix" EXACT [OBOL:automatic]
synonym: "mucous membrane of minor calyx" EXACT [OBOL:automatic]
synonym: "organ mucosa of minor calix" EXACT [OBOL:automatic]
synonym: "organ mucosa of minor calyx" EXACT [OBOL:automatic]
xref: FMA:17937
is_a: UBERON:0005006 ! mucosa of renal pelvis
relationship: part_of UBERON:0001227
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001227 ! minor calyx
relationship: part_of UBERON:0001227 ! minor calyx
[Term]
id: UBERON:0005009
name: mucosa of trigone of urinary bladder
def: "A mucosa that is part of a trigone of urinary bladder [Obol]." [OBOL:automatic]
synonym: "deep trigone mucosa" EXACT [OBOL:automatic]
synonym: "deep trigone mucosa of organ" EXACT [OBOL:automatic]
synonym: "deep trigone mucous membrane" EXACT [OBOL:automatic]
synonym: "deep trigone organ mucosa" EXACT [OBOL:automatic]
synonym: "Lieutaud ' s trigone mucosa" EXACT [OBOL:automatic]
synonym: "Lieutaud ' s trigone mucosa of organ" EXACT [OBOL:automatic]
synonym: "Lieutaud ' s trigone mucous membrane" EXACT [OBOL:automatic]
synonym: "Lieutaud ' s trigone organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of deep trigone" EXACT [OBOL:automatic]
synonym: "mucosa of Lieutaud ' s trigone" EXACT [OBOL:automatic]
synonym: "mucosa of organ of deep trigone" EXACT [OBOL:automatic]
synonym: "mucosa of organ of Lieutaud ' s trigone" EXACT [OBOL:automatic]
synonym: "mucosa of organ of trigone of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vesical trigone" EXACT [OBOL:automatic]
synonym: "mucosa of trigone of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "mucosa of vesical trigone" EXACT [OBOL:automatic]
synonym: "mucous membrane of deep trigone" EXACT [OBOL:automatic]
synonym: "mucous membrane of Lieutaud ' s trigone" EXACT [OBOL:automatic]
synonym: "mucous membrane of trigone of bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "mucous membrane of vesical trigone" EXACT [OBOL:automatic]
synonym: "organ mucosa of deep trigone" EXACT [OBOL:automatic]
synonym: "organ mucosa of Lieutaud ' s trigone" EXACT [OBOL:automatic]
synonym: "organ mucosa of trigone of bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "organ mucosa of vesical trigone" EXACT [OBOL:automatic]
synonym: "trigone of bladder mucosa" EXACT [OBOL:automatic]
synonym: "trigone of bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "trigone of bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "trigone of bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder mucosa" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone mucosa" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone mucosa of organ" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone mucous membrane" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone organ mucosa" EXACT [OBOL:automatic]
synonym: "vesical trigone mucosa" EXACT [OBOL:automatic]
synonym: "vesical trigone mucosa of organ" EXACT [OBOL:automatic]
synonym: "vesical trigone mucous membrane" EXACT [OBOL:automatic]
synonym: "vesical trigone organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17847
is_a: UBERON:0001259 ! mucosa of urinary bladder
relationship: part_of UBERON:0001257
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder
relationship: part_of UBERON:0001257 ! trigone of urinary bladder
[Term]
id: UBERON:0005010
name: mucosa of neck of urinary bladder
def: "A mucosa that is part of a neck of urinary bladder [Obol]." [OBOL:automatic]
synonym: "bladder neck mucosa" EXACT [OBOL:automatic]
synonym: "bladder neck mucosa of organ" EXACT [OBOL:automatic]
synonym: "bladder neck mucous membrane" EXACT [OBOL:automatic]
synonym: "bladder neck organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bladder neck" EXACT [OBOL:automatic]
synonym: "mucosa of neck of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bladder neck" EXACT [OBOL:automatic]
synonym: "mucosa of organ of neck of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vesical neck" EXACT [OBOL:automatic]
synonym: "mucosa of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "mucosa of vesical neck" EXACT [OBOL:automatic]
synonym: "mucous membrane of bladder neck" EXACT [OBOL:automatic]
synonym: "mucous membrane of neck of bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "mucous membrane of vesical neck" EXACT [OBOL:automatic]
synonym: "neck of bladder mucosa" EXACT [OBOL:automatic]
synonym: "neck of bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "neck of bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "neck of bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder mucosa" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of bladder neck" EXACT [OBOL:automatic]
synonym: "organ mucosa of neck of bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "organ mucosa of vesical neck" EXACT [OBOL:automatic]
synonym: "urinary bladder neck mucosa" EXACT [OBOL:automatic]
synonym: "urinary bladder neck mucosa of organ" EXACT [OBOL:automatic]
synonym: "urinary bladder neck mucous membrane" EXACT [OBOL:automatic]
synonym: "vesical neck mucosa" EXACT [OBOL:automatic]
synonym: "vesical neck mucosa of organ" EXACT [OBOL:automatic]
synonym: "vesical neck mucous membrane" EXACT [OBOL:automatic]
synonym: "vesical neck organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17846
is_a: UBERON:0001259 ! mucosa of urinary bladder
relationship: part_of UBERON:0001258
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001258 ! neck of urinary bladder
relationship: part_of UBERON:0001258 ! neck of urinary bladder
[Term]
id: UBERON:0005011
name: mucosa of right uterine tube
def: "A mucosa that is part of a right uterine tube [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of right fallopian tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of right oviduct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of right uterine tube" EXACT [OBOL:automatic]
synonym: "mucosa of right fallopian tube" EXACT [OBOL:automatic]
synonym: "mucosa of right oviduct" EXACT [OBOL:automatic]
synonym: "mucous membrane of right fallopian tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of right oviduct" EXACT [OBOL:automatic]
synonym: "mucous membrane of right uterine tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of right fallopian tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of right oviduct" EXACT [OBOL:automatic]
synonym: "organ mucosa of right uterine tube" EXACT [OBOL:automatic]
synonym: "right fallopian tube mucosa" EXACT [OBOL:automatic]
synonym: "right fallopian tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "right fallopian tube mucous membrane" EXACT [OBOL:automatic]
synonym: "right fallopian tube organ mucosa" EXACT [OBOL:automatic]
synonym: "right oviduct mucosa" EXACT [OBOL:automatic]
synonym: "right oviduct mucosa of organ" EXACT [OBOL:automatic]
synonym: "right oviduct mucous membrane" EXACT [OBOL:automatic]
synonym: "right oviduct organ mucosa" EXACT [OBOL:automatic]
synonym: "right uterine tube mucosa" EXACT [OBOL:automatic]
synonym: "right uterine tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "right uterine tube mucous membrane" EXACT [OBOL:automatic]
synonym: "right uterine tube organ mucosa" EXACT [OBOL:automatic]
xref: FMA:18452
is_a: UBERON:0005048 ! mucosa of uterine tube
relationship: part_of UBERON:0001302
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001302 ! right uterine tube
relationship: part_of UBERON:0001302 ! right uterine tube
[Term]
id: UBERON:0005012
name: mucosa of left uterine tube
def: "A mucosa that is part of a left uterine tube [Obol]." [OBOL:automatic]
synonym: "left fallopian tube mucosa" EXACT [OBOL:automatic]
synonym: "left fallopian tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "left fallopian tube mucous membrane" EXACT [OBOL:automatic]
synonym: "left fallopian tube organ mucosa" EXACT [OBOL:automatic]
synonym: "left oviduct mucosa" EXACT [OBOL:automatic]
synonym: "left oviduct mucosa of organ" EXACT [OBOL:automatic]
synonym: "left oviduct mucous membrane" EXACT [OBOL:automatic]
synonym: "left oviduct organ mucosa" EXACT [OBOL:automatic]
synonym: "left uterine tube mucosa" EXACT [OBOL:automatic]
synonym: "left uterine tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "left uterine tube mucous membrane" EXACT [OBOL:automatic]
synonym: "left uterine tube organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of left fallopian tube" EXACT [OBOL:automatic]
synonym: "mucosa of left oviduct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left fallopian tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left oviduct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left uterine tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of left fallopian tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of left oviduct" EXACT [OBOL:automatic]
synonym: "mucous membrane of left uterine tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of left fallopian tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of left oviduct" EXACT [OBOL:automatic]
synonym: "organ mucosa of left uterine tube" EXACT [OBOL:automatic]
xref: FMA:18453
is_a: UBERON:0005048 ! mucosa of uterine tube
relationship: part_of UBERON:0001303
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001303 ! left uterine tube
relationship: part_of UBERON:0001303 ! left uterine tube
[Term]
id: UBERON:0005013
name: mucosa of male urethra
def: "A mucosa that is part of a male urethra [Obol]." [OBOL:automatic]
synonym: "male urethra mucosa" EXACT [OBOL:automatic]
synonym: "male urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "male urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "male urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of male urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of male urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of male urethra" EXACT [OBOL:automatic]
xref: FMA:239937
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001333
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001333 ! male urethra
relationship: part_of UBERON:0001333 ! male urethra
[Term]
id: UBERON:0005014
name: mucosa of female urethra
def: "A mucosa that is part of a female urethra [Obol]." [OBOL:automatic]
synonym: "female urethra mucosa" EXACT [OBOL:automatic]
synonym: "female urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "female urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "female urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of female urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of female urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of female urethra" EXACT [OBOL:automatic]
xref: FMA:239940
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001334
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001334 ! female urethra
relationship: part_of UBERON:0001334 ! female urethra
[Term]
id: UBERON:0005015
name: mucosa of prostatic urethra
def: "A mucosa that is part of a prostatic urethra [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of prostatic part of urethra" EXACT [OBOL:automatic]
synonym: "mucosa of organ of prostatic urethra" EXACT [OBOL:automatic]
synonym: "mucosa of prostatic part of urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of prostatic part of urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of prostatic urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of prostatic part of urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of prostatic urethra" EXACT [OBOL:automatic]
synonym: "prostatic part of urethra mucosa" EXACT [OBOL:automatic]
synonym: "prostatic part of urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "prostatic part of urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "prostatic part of urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "prostatic urethra mucosa" EXACT [OBOL:automatic]
synonym: "prostatic urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "prostatic urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "prostatic urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "prostatic urethral mucosa" EXACT [FMA:77079]
synonym: "tunica mucosa urethrae prosticae" EXACT [FMA:77079, FMA:TA]
xref: FMA:77079
is_a: UBERON:0005013 ! mucosa of male urethra
relationship: part_of UBERON:0001335
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001335 ! prostatic urethra
relationship: part_of UBERON:0001335 ! prostatic urethra
[Term]
id: UBERON:0005016
name: mucosa of intermediate urethra
def: "A mucosa that is part of a membranous urethra [Obol]." [OBOL:automatic]
synonym: "intermediate part of urethra mucosa" EXACT [OBOL:automatic]
synonym: "intermediate part of urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "intermediate part of urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "intermediate part of urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "intermediate urethra mucosa" EXACT [OBOL:automatic]
synonym: "intermediate urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "intermediate urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "intermediate urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "intermediate urethral mucosa" EXACT [FMA:77085]
synonym: "membranous part of urethra mucosa" EXACT [OBOL:automatic]
synonym: "membranous part of urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "membranous part of urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "membranous part of urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "membranous urethra mucosa" EXACT [OBOL:automatic]
synonym: "membranous urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "membranous urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "membranous urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of intermediate part of urethra" EXACT [OBOL:automatic]
synonym: "mucosa of membranous part of urethra" EXACT [OBOL:automatic]
synonym: "mucosa of membranous urethra" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intermediate part of urethra" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intermediate urethra" EXACT [OBOL:automatic]
synonym: "mucosa of organ of membranous part of urethra" EXACT [OBOL:automatic]
synonym: "mucosa of organ of membranous urethra" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pars membranacea (urethrae)" EXACT [OBOL:automatic]
synonym: "mucosa of pars membranacea (urethrae)" EXACT [OBOL:automatic]
synonym: "mucous membrane of intermediate part of urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of intermediate urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of membranous part of urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of membranous urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of pars membranacea (urethrae)" EXACT [OBOL:automatic]
synonym: "organ mucosa of intermediate part of urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of intermediate urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of membranous part of urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of membranous urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of pars membranacea (urethrae)" EXACT [OBOL:automatic]
synonym: "pars membranacea (urethrae) mucosa" EXACT [OBOL:automatic]
synonym: "pars membranacea (urethrae) mucosa of organ" EXACT [OBOL:automatic]
synonym: "pars membranacea (urethrae) mucous membrane" EXACT [OBOL:automatic]
synonym: "pars membranacea (urethrae) organ mucosa" EXACT [OBOL:automatic]
xref: FMA:77085
xref: galen:MucousMembraneOfUrethra
xref: SCTID:362229009
is_a: UBERON:0005013 ! mucosa of male urethra
relationship: part_of UBERON:0001336
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001336 ! membranous urethra
relationship: part_of UBERON:0001336 ! membranous urethra
[Term]
id: UBERON:0005017
name: mucosa of lacrimal sac
def: "A mucosa that is part of a lacrimal sac [Obol]." [OBOL:automatic]
synonym: "lacrimal sac mucosa" EXACT [OBOL:automatic]
synonym: "lacrimal sac mucosa of organ" EXACT [OBOL:automatic]
synonym: "lacrimal sac mucous membrane" EXACT [OBOL:automatic]
synonym: "lacrimal sac organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lacrimal sac" EXACT [OBOL:automatic]
synonym: "mucous membrane of lacrimal sac" EXACT [OBOL:automatic]
synonym: "organ mucosa of lacrimal sac" EXACT [OBOL:automatic]
xref: FMA:72061
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001351
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001351 ! lacrimal sac
relationship: part_of UBERON:0001351 ! lacrimal sac
[Term]
id: UBERON:0005018
name: mucosa of nasal septum
def: "A mucosa that is part of a nasal septum [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of nasal septum" EXACT [OBOL:automatic]
synonym: "mucous membrane of nasal septum" EXACT [OBOL:automatic]
synonym: "nasal septum mucosa" EXACT [OBOL:automatic]
synonym: "nasal septum mucosa of organ" EXACT [OBOL:automatic]
synonym: "nasal septum mucous membrane" EXACT [OBOL:automatic]
synonym: "nasal septum organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of nasal septum" EXACT [OBOL:automatic]
xref: FMA:60113
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004785 ! respiratory system mucosa
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001706
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001706 ! nasal septum
relationship: part_of UBERON:0001706 ! nasal septum
[Term]
id: UBERON:0005019
name: mucosa of palate
def: "A mucosa that is part of a palate [Obol]." [OBOL:automatic]
synonym: "mucosa of oral roof" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral roof" EXACT [OBOL:automatic]
synonym: "mucosa of organ of palate" EXACT [OBOL:automatic]
synonym: "mucosa of organ of roof of mouth" EXACT [OBOL:automatic]
synonym: "mucosa of roof of mouth" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral roof" EXACT [OBOL:automatic]
synonym: "mucous membrane of palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of roof of mouth" EXACT [OBOL:automatic]
synonym: "oral roof mucosa" EXACT [OBOL:automatic]
synonym: "oral roof mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral roof mucous membrane" EXACT [OBOL:automatic]
synonym: "oral roof organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral roof" EXACT [OBOL:automatic]
synonym: "organ mucosa of palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of roof of mouth" EXACT [OBOL:automatic]
synonym: "palate mucosa" EXACT [OBOL:automatic]
synonym: "palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "palate mucous membrane" EXACT [OBOL:automatic]
synonym: "palate organ mucosa" EXACT [OBOL:automatic]
synonym: "roof of mouth mucosa" EXACT [OBOL:automatic]
synonym: "roof of mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "roof of mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "roof of mouth organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59765
is_a: UBERON:0003729 ! mouth mucosa
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001716
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001716 ! secondary palate
relationship: part_of UBERON:0001716 ! secondary palate
[Term]
id: UBERON:0005020
name: mucosa of tongue
def: "A mucosa that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "lingual mucosa" EXACT [FMA:54807]
synonym: "mucosa of organ of tongue" EXACT [OBOL:automatic]
synonym: "mucous membrane of tongue" EXACT [OBOL:automatic]
synonym: "organ mucosa of tongue" EXACT [OBOL:automatic]
synonym: "tongue mucosa" EXACT [OBOL:automatic]
synonym: "tongue mucosa of organ" EXACT [OBOL:automatic]
synonym: "tongue mucous membrane" EXACT [OBOL:automatic]
synonym: "tongue organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa linguae" EXACT [FMA:54807, FMA:TA]
xref: EFO:0002553
xref: FMA:54807
xref: SCTID:362092002
is_a: UBERON:0003729 ! mouth mucosa
relationship: part_of UBERON:0001723
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001723 ! tongue
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0005021
name: mucosa of sphenoidal sinus
def: "A mucosa that is part of a sphenoidal sinus [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of sphenoid sinus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of sphenoidal sinus" EXACT [OBOL:automatic]
synonym: "mucosa of sphenoid sinus" EXACT [OBOL:automatic]
synonym: "mucous membrane of sphenoid sinus" EXACT [OBOL:automatic]
synonym: "mucous membrane of sphenoidal sinus" EXACT [OBOL:automatic]
synonym: "organ mucosa of sphenoid sinus" EXACT [OBOL:automatic]
synonym: "organ mucosa of sphenoidal sinus" EXACT [OBOL:automatic]
synonym: "sphenoid sinus mucosa" EXACT [OBOL:automatic]
synonym: "sphenoid sinus mucosa of organ" EXACT [OBOL:automatic]
synonym: "sphenoid sinus mucous membrane" EXACT [OBOL:automatic]
synonym: "sphenoid sinus organ mucosa" EXACT [OBOL:automatic]
synonym: "sphenoidal sinus mucosa" EXACT [OBOL:automatic]
synonym: "sphenoidal sinus mucosa of organ" EXACT [OBOL:automatic]
synonym: "sphenoidal sinus mucous membrane" EXACT [OBOL:automatic]
synonym: "sphenoidal sinus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59775
xref: SCTID:43774000
is_a: UBERON:0004785 ! respiratory system mucosa
relationship: part_of UBERON:0001724
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001724 ! sphenoidal sinus
relationship: part_of UBERON:0001724 ! sphenoidal sinus
[Term]
id: UBERON:0005022
name: mucosa of nasopharynx
def: "A mucosa that is part of a nasopharynx [Obol]." [OBOL:automatic]
synonym: "mucosa of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of nasopharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of rhinopharynx" EXACT [OBOL:automatic]
synonym: "mucosa of rhinopharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of nasopharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of rhinopharynx" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx mucosa" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "nasopharynx mucosa" EXACT [OBOL:automatic]
synonym: "nasopharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "nasopharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "nasopharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of nasopharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of rhinopharynx" EXACT [OBOL:automatic]
synonym: "rhinopharynx mucosa" EXACT [OBOL:automatic]
synonym: "rhinopharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "rhinopharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "rhinopharynx organ mucosa" EXACT [OBOL:automatic]
xref: FMA:54971
xref: SCTID:361938001
is_a: UBERON:0000355 ! pharyngeal mucosa
relationship: part_of UBERON:0001728
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001728 ! nasopharynx
relationship: part_of UBERON:0001728 ! nasopharynx
[Term]
id: UBERON:0005023
name: mucosa of oropharynx
def: "A mucosa that is part of a oropharynx [Obol]." [OBOL:automatic]
synonym: "mucosa of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oropharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of oropharynx" EXACT [OBOL:automatic]
synonym: "oral part of pharynx mucosa" EXACT [OBOL:automatic]
synonym: "oral part of pharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral part of pharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "oral part of pharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of oropharynx" EXACT [OBOL:automatic]
synonym: "oropharynx mucosa" EXACT [OBOL:automatic]
synonym: "oropharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "oropharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "oropharynx organ mucosa" EXACT [OBOL:automatic]
xref: FMA:54933
xref: SCTID:144632009
is_a: UBERON:0000355 ! pharyngeal mucosa
is_a: UBERON:0004786 ! gastrointestinal system mucosa
relationship: part_of UBERON:0001729
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001729 ! oropharynx
relationship: part_of UBERON:0001729 ! oropharynx
[Term]
id: UBERON:0005024
name: mucosa of soft palate
def: "A mucosa that is part of a soft palate [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of soft palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of soft palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of soft palate" EXACT [OBOL:automatic]
synonym: "soft palate mucosa" EXACT [OBOL:automatic]
synonym: "soft palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "soft palate mucous membrane" EXACT [OBOL:automatic]
synonym: "soft palate organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59784
xref: SCTID:245842003
is_a: UBERON:0005019 ! mucosa of palate
relationship: part_of UBERON:0001733
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001733 ! soft palate
relationship: part_of UBERON:0001733 ! soft palate
[Term]
id: UBERON:0005025
name: mucosa of uvula
def: "A mucosa that is part of a uvula [Obol]." [OBOL:automatic]
synonym: "cerebellum lobule IX mucosa" EXACT [OBOL:automatic]
synonym: "cerebellum lobule IX mucosa of organ" EXACT [OBOL:automatic]
synonym: "cerebellum lobule IX mucous membrane" EXACT [OBOL:automatic]
synonym: "cerebellum lobule IX organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "mucosa of organ of uvula" EXACT [OBOL:automatic]
synonym: "mucosa of organ of uvula of palate" EXACT [OBOL:automatic]
synonym: "mucosa of uvula of palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "mucous membrane of uvula" EXACT [OBOL:automatic]
synonym: "mucous membrane of uvula of palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "organ mucosa of uvula" EXACT [OBOL:automatic]
synonym: "organ mucosa of uvula of palate" EXACT [OBOL:automatic]
synonym: "uvula mucosa" EXACT [OBOL:automatic]
synonym: "uvula mucosa of organ" EXACT [OBOL:automatic]
synonym: "uvula mucous membrane" EXACT [OBOL:automatic]
synonym: "uvula of palate mucosa" EXACT [OBOL:automatic]
synonym: "uvula of palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "uvula of palate mucous membrane" EXACT [OBOL:automatic]
synonym: "uvula of palate organ mucosa" EXACT [OBOL:automatic]
synonym: "uvula organ mucosa" EXACT [OBOL:automatic]
xref: FMA:60030
is_a: UBERON:0005024 ! mucosa of soft palate
relationship: part_of UBERON:0001734
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001734 ! uvula
relationship: part_of UBERON:0001734 ! uvula
[Term]
id: UBERON:0005026
name: mucosa of middle ear
def: "A mucosa that is part of a middle ear [Obol]." [OBOL:automatic]
synonym: "middle ear mucosa" EXACT [OBOL:automatic]
synonym: "middle ear mucosa of organ" EXACT [OBOL:automatic]
synonym: "middle ear mucous membrane" EXACT [OBOL:automatic]
synonym: "middle ear organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of middle ear" EXACT [OBOL:automatic]
synonym: "mucosa of tympanic cavity" EXACT [FMA:59663]
synonym: "mucous membrane of middle ear" EXACT [OBOL:automatic]
synonym: "organ mucosa of middle ear" EXACT [OBOL:automatic]
synonym: "tunica mucosa cavitatis tympanicae" EXACT [FMA:59663, FMA:TA]
xref: FMA:59663
is_a: UBERON:0000344 ! mucosa
relationship: part_of UBERON:0001756
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001756 ! middle ear
relationship: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0005027
name: mucosa of frontal sinus
def: "A mucosa that is part of a frontal sinus [Obol]." [OBOL:automatic]
synonym: "frontal sinus mucosa" EXACT [OBOL:automatic]
synonym: "frontal sinus mucosa of organ" EXACT [OBOL:automatic]
synonym: "frontal sinus mucous membrane" EXACT [OBOL:automatic]
synonym: "frontal sinus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of frontal sinus" EXACT [OBOL:automatic]
synonym: "mucous membrane of frontal sinus" EXACT [OBOL:automatic]
synonym: "organ mucosa of frontal sinus" EXACT [OBOL:automatic]
xref: FMA:59774
xref: SCTID:368909005
is_a: UBERON:0004785 ! respiratory system mucosa
relationship: part_of UBERON:0001760
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001760 ! frontal sinus
relationship: part_of UBERON:0001760 ! frontal sinus
[Term]
id: UBERON:0005028
name: mucosa of maxillary sinus
def: "A mucosa that is part of a maxillary sinus [Obol]." [OBOL:automatic]
synonym: "antrum of highmore mucosa" EXACT [OBOL:automatic]
synonym: "antrum of highmore mucosa of organ" EXACT [OBOL:automatic]
synonym: "antrum of highmore mucous membrane" EXACT [OBOL:automatic]
synonym: "antrum of highmore organ mucosa" EXACT [OBOL:automatic]
synonym: "maxillary sinus mucosa" EXACT [OBOL:automatic]
synonym: "maxillary sinus mucosa of organ" EXACT [OBOL:automatic]
synonym: "maxillary sinus mucous membrane" EXACT [OBOL:automatic]
synonym: "maxillary sinus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of antrum of highmore" EXACT [OBOL:automatic]
synonym: "mucosa of organ of antrum of highmore" EXACT [OBOL:automatic]
synonym: "mucosa of organ of maxillary sinus" EXACT [OBOL:automatic]
synonym: "mucous membrane of antrum of highmore" EXACT [OBOL:automatic]
synonym: "mucous membrane of maxillary sinus" EXACT [OBOL:automatic]
synonym: "organ mucosa of antrum of highmore" EXACT [OBOL:automatic]
synonym: "organ mucosa of maxillary sinus" EXACT [OBOL:automatic]
xref: FMA:59773
xref: SCTID:368908002
is_a: UBERON:0004785 ! respiratory system mucosa
relationship: part_of UBERON:0001764
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001764 ! maxillary sinus
relationship: part_of UBERON:0001764 ! maxillary sinus
[Term]
id: UBERON:0005029
name: mucosa of lacrimal canaliculus
def: "A mucosa that is part of a lacrimal canaliculus [Obol]." [OBOL:automatic]
synonym: "lacrimal canalicular mucosa" EXACT [FMA:85366]
synonym: "lacrimal canaliculus mucosa" EXACT [OBOL:automatic]
synonym: "lacrimal canaliculus mucosa of organ" EXACT [OBOL:automatic]
synonym: "lacrimal canaliculus mucous membrane" EXACT [OBOL:automatic]
synonym: "lacrimal canaliculus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lacrimal canaliculus" EXACT [OBOL:automatic]
synonym: "mucous membrane of lacrimal canaliculus" EXACT [OBOL:automatic]
synonym: "organ mucosa of lacrimal canaliculus" EXACT [OBOL:automatic]
xref: FMA:85366
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001770
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001770 ! lacrimal canaliculus
relationship: part_of UBERON:0001770 ! lacrimal canaliculus
[Term]
id: UBERON:0005030
name: mucosa of paranasal sinus
synonym: "paranasal sinus mucosa" EXACT [OBOL:automatic]
xref: FMA:59772
is_a: UBERON:0000344 ! mucosa
relationship: adjacent_to UBERON:0001825
intersection_of: UBERON:0000344 ! mucosa
intersection_of: adjacent_to UBERON:0001825 ! paranasal sinus
relationship: adjacent_to UBERON:0001825 ! paranasal sinus
[Term]
id: UBERON:0005031
name: mucosa of upper lip
def: "A mucosa that is part of a upper lip [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of upper lip" EXACT [OBOL:automatic]
synonym: "mucous membrane of upper lip" EXACT [OBOL:automatic]
synonym: "organ mucosa of upper lip" EXACT [OBOL:automatic]
synonym: "upper lip mucosa" EXACT [OBOL:automatic]
synonym: "upper lip mucosa of organ" EXACT [OBOL:automatic]
synonym: "upper lip mucous membrane" EXACT [OBOL:automatic]
synonym: "upper lip organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59832
xref: ncithesaurus:Mucosa_of_the_Upper_Lip
xref: SCTID:362088009
is_a: UBERON:0003729 ! mouth mucosa
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001834
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001834 ! upper lip
relationship: part_of UBERON:0001834 ! upper lip
[Term]
id: UBERON:0005032
name: mucosa of lower lip
def: "A mucosa that is part of a lower lip [Obol]." [OBOL:automatic]
synonym: "lower lip mucosa" EXACT [OBOL:automatic]
synonym: "lower lip mucosa of organ" EXACT [OBOL:automatic]
synonym: "lower lip mucous membrane" EXACT [OBOL:automatic]
synonym: "lower lip organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lower lip" EXACT [OBOL:automatic]
synonym: "mucous membrane of lower lip" EXACT [OBOL:automatic]
synonym: "organ mucosa of lower lip" EXACT [OBOL:automatic]
xref: FMA:59833
xref: ncithesaurus:Mucosa_of_the_Lower_Lip
xref: SCTID:362089001
is_a: UBERON:0003729 ! mouth mucosa
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001835
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001835 ! lower lip
relationship: part_of UBERON:0001835 ! lower lip
[Term]
id: UBERON:0005033
name: mucosa of gallbladder
def: "A mucosa that is part of a gallbladder [Obol]." [OBOL:automatic]
synonym: "gall bladder mucosa" EXACT [OBOL:automatic]
synonym: "gall bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "gall bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "gall bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "gallbladder mucosa" EXACT [OBOL:automatic]
synonym: "gallbladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "gallbladder mucous membrane" EXACT [OBOL:automatic]
synonym: "gallbladder organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of gall bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gall bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gallbladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of gall bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of gallbladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of gall bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of gallbladder" EXACT [OBOL:automatic]
synonym: "tunica mucosa (vesica biliaris)" EXACT [FMA:14662]
synonym: "tunica mucosa vesicae biliaris" EXACT [FMA:14662, FMA:TA]
xref: FMA:14662
xref: SCTID:362196002
is_a: UBERON:0004999 ! mucosa of biliary tree
relationship: part_of UBERON:0002110
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002110 ! gallbladder
relationship: part_of UBERON:0002110 ! gallbladder
[Term]
id: UBERON:0005034
name: mucosa of right main bronchus
def: "A mucosa that is part of a right main bronchus [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of right bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of right main bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of right principal bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of right bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of right principal bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of right bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of right main bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of right principal bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of right bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of right main bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of right principal bronchus" EXACT [OBOL:automatic]
synonym: "right bronchus mucosa" EXACT [OBOL:automatic]
synonym: "right bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "right bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "right bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "right main bronchial mucosa" EXACT [FMA:13137]
synonym: "right main bronchus mucosa" EXACT [OBOL:automatic]
synonym: "right main bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "right main bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "right main bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "right principal bronchus mucosa" EXACT [OBOL:automatic]
synonym: "right principal bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "right principal bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "right principal bronchus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:13137
is_a: UBERON:0005036 ! mucosa of main bronchus
relationship: part_of UBERON:0002177
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002177 ! right main bronchus
relationship: part_of UBERON:0002177 ! right main bronchus
[Term]
id: UBERON:0005035
name: mucosa of left main bronchus
def: "A mucosa that is part of a left main bronchus [Obol]." [OBOL:automatic]
synonym: "left bronchus mucosa" EXACT [OBOL:automatic]
synonym: "left bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "left bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "left bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "left main bronchial mucosa" EXACT [FMA:13138]
synonym: "left main bronchus mucosa" EXACT [OBOL:automatic]
synonym: "left main bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "left main bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "left main bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "left principal bronchus mucosa" EXACT [OBOL:automatic]
synonym: "left principal bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "left principal bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "left principal bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of left bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of left principal bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left main bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left principal bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of left bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of left main bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of left principal bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of left bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of left main bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of left principal bronchus" EXACT [OBOL:automatic]
xref: FMA:13138
is_a: UBERON:0005036 ! mucosa of main bronchus
relationship: part_of UBERON:0002178
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002178 ! left main bronchus
relationship: part_of UBERON:0002178 ! left main bronchus
[Term]
id: UBERON:0005036
name: mucosa of main bronchus
def: "A mucosa that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "bronchus principalis mucosa" EXACT [OBOL:automatic]
synonym: "bronchus principalis mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchus principalis mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchus principalis organ mucosa" EXACT [OBOL:automatic]
synonym: "main bronchial mucosa" EXACT [FMA:13115]
synonym: "main bronchus mucosa" EXACT [OBOL:automatic]
synonym: "main bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "main bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "main bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bronchus principalis" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchus principalis" EXACT [OBOL:automatic]
synonym: "mucosa of organ of main bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of primary bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of principal bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of primary bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of principal bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchus principalis" EXACT [OBOL:automatic]
synonym: "mucous membrane of main bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of primary bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of principal bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchus principalis" EXACT [OBOL:automatic]
synonym: "organ mucosa of main bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of primary bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of principal bronchus" EXACT [OBOL:automatic]
synonym: "primary bronchus mucosa" EXACT [OBOL:automatic]
synonym: "primary bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "primary bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "primary bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "principal bronchus mucosa" EXACT [OBOL:automatic]
synonym: "principal bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "principal bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "principal bronchus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:13115
is_a: UBERON:0000410 ! bronchial mucosa
relationship: part_of UBERON:0002182
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0005037
name: mucosa of lobar bronchus
def: "A mucosa that is part of a lobar bronchus [Obol]." [OBOL:automatic]
synonym: "lobar bronchial mucosa" EXACT [FMA:62668]
synonym: "lobar bronchus mucosa" EXACT [OBOL:automatic]
synonym: "lobar bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "lobar bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "lobar bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lobar bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of secondary bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of secondary bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of lobar bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of secondary bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of lobar bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of secondary bronchus" EXACT [OBOL:automatic]
synonym: "secondary bronchus mucosa" EXACT [OBOL:automatic]
synonym: "secondary bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "secondary bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "secondary bronchus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:62668
is_a: UBERON:0000410 ! bronchial mucosa
relationship: part_of UBERON:0002183
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002183 ! lobar bronchus
relationship: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0005038
name: mucosa of segmental bronchus
def: "A mucosa that is part of a segmental bronchus [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of segmental bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of segmental bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of segmental bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "segmental bronchial mucosa" EXACT [FMA:62666]
synonym: "segmental bronchus mucosa" EXACT [OBOL:automatic]
synonym: "segmental bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "segmental bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "segmental bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "tertiary bronchus mucosa" EXACT [OBOL:automatic]
synonym: "tertiary bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "tertiary bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "tertiary bronchus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:62666
is_a: UBERON:0000410 ! bronchial mucosa
relationship: part_of UBERON:0002184
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002184 ! segmental bronchus
relationship: part_of UBERON:0002184 ! segmental bronchus
[Term]
id: UBERON:0005039
name: mucosa of bronchiole
def: "A mucosa that is part of a bronchiole [Obol]." [OBOL:automatic]
synonym: "bronchiole mucosa" EXACT [OBOL:automatic]
synonym: "bronchiole mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchiole mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchiole organ mucosa" EXACT [OBOL:automatic]
synonym: "lobular bronchiole mucosa" EXACT [OBOL:automatic]
synonym: "lobular bronchiole mucosa of organ" EXACT [OBOL:automatic]
synonym: "lobular bronchiole mucous membrane" EXACT [OBOL:automatic]
synonym: "lobular bronchiole organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of lobular bronchiole" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchiole" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lobular bronchiole" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchiole" EXACT [OBOL:automatic]
synonym: "mucous membrane of lobular bronchiole" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchiole" EXACT [OBOL:automatic]
synonym: "organ mucosa of lobular bronchiole" EXACT [OBOL:automatic]
xref: FMA:263230
xref: FMA:62774
xref: SCTID:10887006
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004785 ! respiratory system mucosa
relationship: part_of UBERON:0002186
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002186 ! bronchiole
relationship: part_of UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0005040
name: mucosa of terminal bronchiole
def: "A mucosa that is part of a terminal bronchiole [Obol]." [OBOL:automatic]
synonym: "bronchiolus terminalis mucosa" EXACT [OBOL:automatic]
synonym: "bronchiolus terminalis mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchiolus terminalis mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchiolus terminalis organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "mucosa of organ of terminal bronchiole" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "mucous membrane of terminal bronchiole" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "organ mucosa of terminal bronchiole" EXACT [OBOL:automatic]
synonym: "terminal bronchiole mucosa" EXACT [OBOL:automatic]
synonym: "terminal bronchiole mucosa of organ" EXACT [OBOL:automatic]
synonym: "terminal bronchiole mucous membrane" EXACT [OBOL:automatic]
synonym: "terminal bronchiole organ mucosa" EXACT [OBOL:automatic]
xref: FMA:263232
is_a: UBERON:0005039 ! mucosa of bronchiole
relationship: part_of UBERON:0002187
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002187 ! terminal bronchiole
relationship: part_of UBERON:0002187 ! terminal bronchiole
[Term]
id: UBERON:0005041
name: mucosa of respiratory bronchiole
def: "A mucosa that is part of a respiratory bronchiole [Obol]." [OBOL:automatic]
synonym: "bronchiolus respiratorius mucosa" EXACT [OBOL:automatic]
synonym: "bronchiolus respiratorius mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchiolus respiratorius mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchiolus respiratorius organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "mucosa of organ of respiratory bronchiole" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "mucous membrane of respiratory bronchiole" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "organ mucosa of respiratory bronchiole" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole mucosa" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole mucosa of organ" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole mucous membrane" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole organ mucosa" EXACT [OBOL:automatic]
xref: FMA:263238
is_a: UBERON:0005039 ! mucosa of bronchiole
relationship: part_of UBERON:0002188
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002188 ! respiratory bronchiole
relationship: part_of UBERON:0002188 ! respiratory bronchiole
[Term]
id: UBERON:0005042
name: inner epithelial layer of tympanic membrane
def: "A portion of the tympanic cavity epithelium which makes up the outer (cuticular) layer of the tympanic membrane" [PMID:11237469, UBERON:cjm]
comment: AO notes: in FMA this is classified as a mucosa
synonym: "mucosa of tympanic membrane" EXACT [FMA:56844]
synonym: "mucous layer of tympanic membrane" EXACT [FMA:56844]
synonym: "mucous stratum of tympanic membrane" EXACT [FMA:56844]
synonym: "tympanic membrane external middle ear cavity epithelial component" EXACT [UBERON:cjm]
xref: FMA:56844
xref: SCTID:36411006
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0009647 ! tympanic membrane epithelium
relationship: part_of UBERON:0010063
intersection_of: UBERON:0009647 ! tympanic membrane epithelium
intersection_of: part_of UBERON:0010063 ! tympanic cavity epithelium
relationship: part_of UBERON:0010063 ! tympanic cavity epithelium
[Term]
id: UBERON:0005043
name: mucosa of nasolacrimal duct
def: "A mucosa that is part of a nasolacrimal duct [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of nasolacrimal duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of nasolacrimal duct" EXACT [OBOL:automatic]
synonym: "nasolacrimal duct mucosa" EXACT [OBOL:automatic]
synonym: "nasolacrimal duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "nasolacrimal duct mucous membrane" EXACT [OBOL:automatic]
synonym: "nasolacrimal duct organ mucosa" EXACT [OBOL:automatic]
synonym: "nasolacrimal ductal mucosa" EXACT [FMA:59664]
synonym: "organ mucosa of nasolacrimal duct" EXACT [OBOL:automatic]
xref: FMA:59664
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002392
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002392 ! nasolacrimal duct
relationship: part_of UBERON:0002392 ! nasolacrimal duct
[Term]
id: UBERON:0005044
name: mucosa of pharyngotympanic tube
def: "A mucosa that is part of a pharyngotympanic tube [Obol]." [OBOL:automatic]
synonym: "auditory tube mucosa" EXACT [OBOL:automatic]
synonym: "auditory tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "auditory tube mucous membrane" EXACT [OBOL:automatic]
synonym: "auditory tube organ mucosa" EXACT [OBOL:automatic]
synonym: "internal auditory tube mucosa" EXACT [OBOL:automatic]
synonym: "internal auditory tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "internal auditory tube mucous membrane" EXACT [OBOL:automatic]
synonym: "internal auditory tube organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of auditory tube" EXACT [OBOL:automatic]
synonym: "mucosa of internal auditory tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of auditory tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of internal auditory tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pharyngotympanic tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of auditory tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of internal auditory tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of pharyngotympanic tube" EXACT [OBOL:automatic]
synonym: "mucuous membrane of eustachian tube" EXACT [FMA:60109]
synonym: "mucuous membrane of pharyngotympanic tube" EXACT [FMA:60109]
synonym: "organ mucosa of auditory tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of internal auditory tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of pharyngotympanic tube" EXACT [OBOL:automatic]
synonym: "pharyngotympanic tube mucosa" EXACT [OBOL:automatic]
synonym: "pharyngotympanic tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "pharyngotympanic tube mucous membrane" EXACT [OBOL:automatic]
synonym: "pharyngotympanic tube organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa (tuba auditiva)" EXACT [FMA:60109]
synonym: "tunica mucosa (tuba auditoria)" EXACT [FMA:60109]
xref: FMA:60109
is_a: UBERON:0005026 ! mucosa of middle ear
relationship: part_of UBERON:0002393
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002393 ! pharyngotympanic tube
relationship: part_of UBERON:0002393 ! pharyngotympanic tube
[Term]
id: UBERON:0005045
name: mucosa of ethmoidal sinus
def: "A mucosa that is part of a ethmoid sinus [Obol]." [OBOL:automatic]
synonym: "ethmoid sinus mucosa" EXACT [OBOL:automatic]
synonym: "ethmoid sinus mucosa of organ" EXACT [OBOL:automatic]
synonym: "ethmoid sinus mucous membrane" EXACT [OBOL:automatic]
synonym: "ethmoid sinus organ mucosa" EXACT [OBOL:automatic]
synonym: "ethmoidal sinus mucosa" EXACT [FMA:59776]
synonym: "mucosa of ethmoid sinus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ethmoid sinus" EXACT [OBOL:automatic]
synonym: "mucous membrane of ethmoid sinus" EXACT [OBOL:automatic]
synonym: "organ mucosa of ethmoid sinus" EXACT [OBOL:automatic]
xref: FMA:59776
xref: SCTID:65501003
is_a: UBERON:0004785 ! respiratory system mucosa
relationship: part_of UBERON:0002453
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002453 ! ethmoid sinus
relationship: part_of UBERON:0002453 ! ethmoid sinus
[Term]
id: UBERON:0005046
name: mucosa of hard palate
def: "A mucosa that is part of a hard palate [Obol]." [OBOL:automatic]
synonym: "hard palate mucosa" EXACT [OBOL:automatic]
synonym: "hard palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "hard palate mucous membrane" EXACT [OBOL:automatic]
synonym: "hard palate organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of hard palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of hard palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of hard palate" EXACT [OBOL:automatic]
xref: FMA:59783
xref: SCTID:245841005
is_a: UBERON:0005019 ! mucosa of palate
relationship: part_of UBERON:0003216
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0003216 ! hard palate
relationship: part_of UBERON:0003216 ! hard palate
[Term]
id: UBERON:0005047
name: mucosa of vocal fold
def: "A mucosa that is part of a vocal cord [Obol]." [OBOL:automatic]
synonym: "mucosa of glottis" EXACT [FMA:64017]
synonym: "mucosa of organ of true vocal cord" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vocal cord" EXACT [OBOL:automatic]
synonym: "mucosa of true vocal cord" EXACT [OBOL:automatic]
synonym: "mucosa of vocal cord" EXACT [OBOL:automatic]
synonym: "mucous membrane of true vocal cord" EXACT [OBOL:automatic]
synonym: "mucous membrane of vocal cord" EXACT [OBOL:automatic]
synonym: "organ mucosa of true vocal cord" EXACT [OBOL:automatic]
synonym: "organ mucosa of vocal cord" EXACT [OBOL:automatic]
synonym: "true vocal cord mucosa" EXACT [OBOL:automatic]
synonym: "true vocal cord mucosa of organ" EXACT [OBOL:automatic]
synonym: "true vocal cord mucous membrane" EXACT [OBOL:automatic]
synonym: "true vocal cord organ mucosa" EXACT [OBOL:automatic]
synonym: "vocal cord mucosa" EXACT [OBOL:automatic]
synonym: "vocal cord mucosa of organ" EXACT [OBOL:automatic]
synonym: "vocal cord mucous membrane" EXACT [OBOL:automatic]
synonym: "vocal cord organ mucosa" EXACT [OBOL:automatic]
synonym: "vocal fold mucosa" EXACT [FMA:64017]
xref: FMA:64017
is_a: UBERON:0001824 ! mucosa of larynx
relationship: part_of UBERON:0003706
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0003706 ! vocal cord
relationship: part_of UBERON:0003706 ! vocal cord
[Term]
id: UBERON:0005048
name: mucosa of uterine tube
def: "A mucosa that is part of a fallopian tube [Obol]." [OBOL:automatic]
synonym: "fallopian tube mucosa" EXACT [OBOL:automatic]
synonym: "fallopian tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "fallopian tube mucous membrane" EXACT [OBOL:automatic]
synonym: "fallopian tube organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of fallopian tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of fallopian tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of uterine tube" EXACT [OBOL:automatic]
synonym: "mucosa of oviduct" EXACT [FMA:18319]
synonym: "mucous membrane of fallopian tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of uterine tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of fallopian tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of uterine tube" EXACT [OBOL:automatic]
synonym: "tunica mucosa tubae uterinae" EXACT [FMA:18319, FMA:TA]
synonym: "uterine tubal mucosa" EXACT [FMA:18319]
synonym: "uterine tube mucosa" EXACT [OBOL:automatic]
synonym: "uterine tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "uterine tube mucous membrane" EXACT [OBOL:automatic]
synonym: "uterine tube organ mucosa" EXACT [OBOL:automatic]
xref: FMA:18319
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0003889
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0003889 ! fallopian tube
relationship: part_of UBERON:0003889 ! fallopian tube
[Term]
id: UBERON:0005049
name: mucosa of infundibulum of uterine tube
def: "A mucosa that is part of a uterine tube infundibulum [Obol]." [OBOL:automatic]
synonym: "mucosa of infundibulum of fallopian tube" EXACT [FMA:18357]
synonym: "mucosa of infundibulum of oviduct" EXACT [FMA:18357]
synonym: "mucosa of organ of uterine tube infundibulum" EXACT [OBOL:automatic]
synonym: "mucosa of uterine tube infundibulum" EXACT [OBOL:automatic]
synonym: "mucous membrane of uterine tube infundibulum" EXACT [OBOL:automatic]
synonym: "organ mucosa of uterine tube infundibulum" EXACT [OBOL:automatic]
synonym: "uterine tube infundibulum mucosa" EXACT [OBOL:automatic]
synonym: "uterine tube infundibulum mucosa of organ" EXACT [OBOL:automatic]
synonym: "uterine tube infundibulum mucous membrane" EXACT [OBOL:automatic]
synonym: "uterine tube infundibulum organ mucosa" EXACT [OBOL:automatic]
xref: FMA:18357
is_a: UBERON:0005048 ! mucosa of uterine tube
relationship: part_of UBERON:0003984
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0003984 ! uterine tube infundibulum
relationship: part_of UBERON:0003984 ! uterine tube infundibulum
[Term]
id: UBERON:0005050
name: liver papillary process
synonym: "papillary process of caudate lobe of liver" EXACT [FMA:14506]
synonym: "processus papillaris" EXACT [FMA:14506]
xref: FMA:14506
xref: MA:0001643
xref: SCTID:271187002
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0005051
name: mediastinum testis
def: "The mediastinum testis is a network of fibrous connective tissue that extends from the upper to near the lower extremity of the testis, and is wider above than below. From its front and sides numerous imperfect septa (trabeculæ) are given off, which radiate toward the surface of the organ, and are attached to the tunica albuginea. They divide the interior of the organ into a number of incomplete spaces, called lobules. These are somewhat cone-shaped, being broad at their bases at the surface of the gland, and becoming narrower as they converge to the mediastinum. The mediastinum supports the rete testis and blood vessels of the testis in their passage to and from the substance of the gland[WP]" [Wikipedia:Mediastinum_testis]
synonym: "body of highmore" EXACT [FMA:19812]
synonym: "mediastinum of testis" EXACT [FMA:19812]
synonym: "testis mediastinum" EXACT [FMA:19812]
xref: EMAPA:18331
xref: FMA:19812
xref: http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b5/Hodenschema.svg/200px-Hodenschema.svg.png
xref: SCTID:362279007
is_a: UBERON:0005423 ! developing anatomical structure
relationship: has_part UBERON:0002384 ! connective tissue
relationship: overlaps UBERON:0003728 ! mediastinum
relationship: part_of UBERON:0000473 ! testis
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0005052
name: gizzard
def: "The muscular enlargement of the alimentary canal that has usually thick muscular walls and a tough horny lining for grinding the food and when the crop is present follows it and the proventriculus." [BTO:0000520, Wikipedia:Gizzard]
comment: AO notes: BTO also includes: A thickened part of the alimentary canal in some animals (as an insect or an earthworm) that is similar in function to the crop of a bird. However, we are refering to the Aves structure here
subset: organ_slim
synonym: "gastric mill" EXACT [Wikipedia:Gizzard]
synonym: "gigerium" EXACT [Wikipedia:Gizzard]
synonym: "ventriculus" RELATED [Wikipedia:Gizzard]
xref: BTO:0000520
xref: GAID:1238
xref: MESH:A.13.853.363
xref: ncithesaurus:Gizzard
is_a: UBERON:0000945 {source="cjm"} ! stomach
relationship: has_part UBERON:0008861 {source="Wikipedia"} ! pyloric gastric gland
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0005053
name: nerve cord
subset: dubious_grouping
xref: BILA:0000136
xref: BTO:0001656
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0005054
name: dorsal nerve cord
def: "The dorsal tubular cord of nervous tissue above the notochord of a chordate that comprises or develops into the central nervous system[BTO]. The nerve cord of chordates develops dorsally in the body as a hollow tube above the notochord. In most species it differentiates in embryogeny into the brain anteriorly and spinal cord that runs through the trunk and tail. Together the brain and spinal cord are the central nervous system to which peripheral sensory and motor nerves connect[TOL]. The dorsal nerve cord is one of the embryonic features unique to chordates, along with a notochord, a post-anal tail and pharyngeal slits. The dorsal nerve cord is a hollow cord dorsal to the notochord. It is formed from a part of the ectoderm that rolls, forming the hollow tube, compared to other animal phyla, which have solid, ventral tubes. The dorsal nerve cord is later modified into the brain and spinal cord. Dorsal nerve cord is mainly found in phylum Vertebrata[WP]." [BTO:0002329, http://tolweb.org/Chordata/2499, Wikipedia:Dorsal_nerve_cord]
xref: BTO:0002329
is_a: UBERON:0005053 ! nerve cord
relationship: develops_from UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0005055
name: zone of long bone
def: "An organ part that is part of a long bone [Obol]." [OBOL:automatic]
subset: uberon_slim
synonym: "long bone zone" EXACT []
xref: FMA:24008
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0002495
intersection_of: UBERON:0005913 ! zone of bone organ
intersection_of: part_of UBERON:0002495 ! long bone
relationship: part_of UBERON:0002495 ! long bone
[Term]
id: UBERON:0005056
name: external female genitalia
def: "An external reproductive organ that is part of a female reproductive system [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "external female genital organ" EXACT [BTO:0003100]
synonym: "external genitalia of female reproductive system" EXACT [OBOL:automatic]
synonym: "female external genitalia" EXACT [FMA:45649]
synonym: "organa genitalia feminina externa" RELATED [BTO:0003100]
xref: BTO:0003100
xref: EMAPA:30984
xref: FMA:45649
xref: galen:FemaleExternalGenitalia
xref: SCTID:362234008
is_a: UBERON:0003134 ! female reproductive organ
is_a: UBERON:0004176 ! external reproductive organ
relationship: part_of UBERON:0000474
intersection_of: UBERON:0004176 ! external reproductive organ
intersection_of: part_of UBERON:0000474 ! female reproductive system
disjoint_from: UBERON:0009196 ! indifferent external genitalia
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0005057
name: immune organ
def: "An organ that is part of a immune system [Obol]." [OBOL:automatic]
subset: organ_slim
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0002405
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002405 ! immune system
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0005058
name: hemolymphoid system gland
def: "A gland that is part of a hemolymphoid system [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "hemopoietic or lymphoid gland" EXACT [GOC:cjm]
synonym: "hemopoietic or lymphoid organ" BROAD [GO:0048534]
xref: MA:0002962
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0002193
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0002193 ! hemolymphoid system
relationship: part_of UBERON:0002193 ! hemolymphoid system
[Term]
id: UBERON:0005059
name: Drosophila lymph gland
comment: out of scope
is_obsolete: true
[Term]
id: UBERON:0005061
name: neural groove
def: "The median dorsal longitudinal groove formed in the embryo by the neural plate after the appearance of the neural folds." [GO:0001842, GOC:cjm]
xref: AAO:0011071
xref: ncithesaurus:Neural_Groove
xref: SCTID:361463007
xref: XAO:0000248
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0003075 ! neural plate
[Term]
id: UBERON:0005062
name: neural fold
def: "One of the two elevated edges of the neural groove." [GO:0001842, MP:0011256]
synonym: "medullary fold" EXACT [MP:0011256]
xref: EHDAA2:0001249
xref: EMAPA:16090
xref: EMAPA:16093
xref: EMAPA:16142
xref: EMAPA:16146
xref: EMAPA:16151
xref: EMAPA:16155
xref: EMAPA:16159
xref: EMAPA:16162
xref: EMAPA:16288
xref: EMAPA:16292
xref: EMAPA:16295
xref: EMAPA:16299
xref: EMAPA:16303
xref: EMAPA:16307
xref: EMAPA:16528
xref: ncithesaurus:Neural_Fold
xref: SCTID:361461009
xref: XAO:0004087
is_a: UBERON:0005157 ! epithelial fold
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010371 ! ecto-epithelium
disjoint_from: UBERON:0009746 ! head fold
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0003075 ! neural plate
[Term]
id: UBERON:0005063
name: left ventricular compact myocardium
def: "." [GO:0003224]
is_a: UBERON:0004127 ! compact layer of ventricle
relationship: part_of UBERON:0002084
intersection_of: UBERON:0004127 ! compact layer of ventricle
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0003382 {source="GO"} ! cardiac muscle of left ventricle
[Term]
id: UBERON:0005064
name: left ventricular trabecular myocardium
def: "." [GO:0003225]
is_a: UBERON:0004126 ! trabecular layer of ventricle
relationship: part_of UBERON:0002084
intersection_of: UBERON:0004126 ! trabecular layer of ventricle
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0003382 {source="GO"} ! cardiac muscle of left ventricle
[Term]
id: UBERON:0005065
name: right ventricular compact myocardium
def: "." [GO:0003226]
is_a: UBERON:0004127 ! compact layer of ventricle
relationship: part_of UBERON:0002080
intersection_of: UBERON:0004127 ! compact layer of ventricle
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0003381 {source="GO"} ! cardiac muscle of right ventricle
[Term]
id: UBERON:0005066
name: right ventricular trabecular myocardium
def: "." [GO:0003227]
is_a: UBERON:0004126 ! trabecular layer of ventricle
relationship: part_of UBERON:0002080
intersection_of: UBERON:0004126 ! trabecular layer of ventricle
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0003381 {source="GO"} ! cardiac muscle of right ventricle
[Term]
id: UBERON:0005067
name: amphid sensory organ
def: "Amphid sensory organs are the sensory organs of nematodes[GO]." [GO:0003386]
subset: organ_slim
synonym: "amphid sensillum" EXACT []
xref: WBbt:0005391
is_a: UBERON:0000020 ! sense organ
[Term]
id: UBERON:0005068
name: neural rod
def: "a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts[GO]. An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube[ZFIN]." [GO:0014024, ZFA:0000133]
xref: EFO:0003498
xref: TAO:0000133
xref: ZFA:0000133
property_value: UBPROP:0000001 "An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0002346 ! neurectoderm
relationship: develops_from UBERON:0007135 ! neural keel
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0005069
name: neural fold hinge point
def: "The median hinge point extends for the entire length of the neural tube, and the lateral hinge points do not form in the spinal cord region of the neural tube[GO]." [GO:0021504]
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0005070
name: anterior neuropore
def: "The anterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021506]
comment: GO def of anterior neuropore closure is: The joining together of the neural folds of the rostral opening of the neural tube
synonym: "cephalic neuropore" EXACT [SCTID:361478000]
synonym: "cranial neuropore" EXACT [UBERON:cjm]
synonym: "rostral neuropore" EXACT [EMAPA:16523]
xref: EHDAA2:0004203
xref: EMAPA:16523
xref: RETIRED_EHDAA2:0001768
xref: SCTID:361478000
xref: VHOG:0000768
is_a: UBERON:0005077 ! neuropore
[Term]
id: UBERON:0005071
name: posterior neuropore
def: "The posterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021507]
synonym: "caudal neuropore" EXACT [EMAPA:16526]
xref: EHDAA2:0000676
xref: EHDAA:900
xref: EMAPA:16526
xref: RETIRED_EHDAA2:0000223
xref: SCTID:361479008
xref: VHOG:0000769
is_a: UBERON:0005077 ! neuropore
[Term]
id: UBERON:0005073
name: preganglionic parasympathetic nervous system
is_a: UBERON:0000011 ! parasympathetic nervous system
[Term]
id: UBERON:0005074
name: postganglionic parasympathetic nervous system
is_a: UBERON:0000011 ! parasympathetic nervous system
relationship: develops_from UBERON:0005073 ! preganglionic parasympathetic nervous system
[Term]
id: UBERON:0005075
name: forebrain-midbrain boundary
synonym: "forebrain midbrain boundary" EXACT [ZFA:0001367]
xref: TAO:0001367
xref: ZFA:0001367
property_value: UBPROP:0000001 "The boundary between the diencephalon and the mesencephalon.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from forebrain midbrain boundary neural tube (TAO:0007040)[TAO]" xsd:string
is_a: UBERON:0000015 ! anatomical boundary
relationship: adjacent_to UBERON:0001890
relationship: adjacent_to UBERON:0001891
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0001890 ! forebrain
intersection_of: adjacent_to UBERON:0001891 ! midbrain
relationship: adjacent_to UBERON:0001890 ! forebrain
relationship: adjacent_to UBERON:0001891 ! midbrain
relationship: develops_from UBERON:0007288 {evidence="definitional"} ! presumptive forebrain midbrain boundary
[Term]
id: UBERON:0005076
name: hindbrain-spinal cord boundary
is_a: UBERON:0000015 ! anatomical boundary
relationship: adjacent_to UBERON:0002028
relationship: adjacent_to UBERON:0002240
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0002028 ! hindbrain
intersection_of: adjacent_to UBERON:0002240 ! spinal cord
relationship: adjacent_to UBERON:0002028 ! hindbrain
relationship: adjacent_to UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0005077
name: neuropore
def: "Joined neural folds at either end of the neural tube.[GO]." [GO:0021995]
xref: SCTID:360408007
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0005078
name: lamina terminalis
def: "." [GO:0021996]
xref: AAO:0000881
xref: BM:LT
xref: EHDAA2:0000903
xref: EMAPA:16649
xref: EMAPA:16904
xref: FMA:61975
xref: SCTID:361483008
xref: VHOG:0001547
property_value: UBPROP:0000001 "In those cases in which the interilial region is broadly expanded and the pubis is extremely reduced, the anterior margin of the ischium forms an expanded area.[AAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0005070 ! anterior neuropore
[Term]
id: UBERON:0005079
name: eggshell
def: "a product of the somatic follicle cell epithelium and a structure that supports the egg in a hostile environment, minimizing water loss whilst allowing gas exchanges essential for embryonic respiration[GO]." [GO:0030703, Wikipedia:Eggshell]
synonym: "egg shell" EXACT [BTO:0001716]
xref: BTO:0001716
xref: MESH:A.13.316
xref: WBbt:0005843
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: surrounds UBERON:0007379 ! egg
[Term]
id: UBERON:0005080
name: metanephric ureteric bud
def: "the portion of the ureteric bud tube that contributes to the morphogenesis of the metanephros[GO]." [GO:0035502]
is_a: UBERON:0000084 ! ureteric bud
is_a: UBERON:0007497 ! developing epithelial placode
relationship: develops_into UBERON:0000081
intersection_of: UBERON:0000084 ! ureteric bud
intersection_of: develops_into UBERON:0000081 ! metanephros
relationship: develops_into UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005081
name: ureter ureteric bud
def: "The portion of the ureteric bud that contributes to the morphogenesis of the ureter. The ureter ureteric bud is the initial structure that forms the ureter[GO]." [GO:0035503]
is_a: UBERON:0000084 ! ureteric bud
is_a: UBERON:0007497 ! developing epithelial placode
relationship: develops_into UBERON:0000056
intersection_of: UBERON:0000084 ! ureteric bud
intersection_of: develops_into UBERON:0000056 ! ureter
relationship: develops_into UBERON:0000056 ! ureter
[Term]
id: UBERON:0005082
name: tube lumen
def: "A hole in a tube[GO]." [GO:0060609]
xref: AEO:0000078
xref: EHDAA2:0004618
xref: RETIRED_EHDAA2:0003078
is_a: UBERON:0000464 ! anatomical space
relationship: surrounded_by UBERON:0000025
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: surrounded_by UBERON:0000025 ! tube
relationship: surrounded_by UBERON:0000025 ! tube
[Term]
id: UBERON:0005083
name: nipple sheath
def: "a circular ingrowth of the epidermis around the region of the mammary sprout[GO]." [GO:0060659]
is_a: UBERON:0001003 ! epidermis
is_a: UBERON:0003244 ! epithelium of mammary gland
is_a: UBERON:0008367 ! breast epithelium
relationship: part_of UBERON:0002030 ! nipple
[Term]
id: UBERON:0005085
name: ectodermal placode
def: "An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]" [GO:0060788]
comment: Homology: With the exception of the adenohypophysis, homologues of the nonneurogenic placodes (e.g. placodes giving rise to the teeth, hair follicles and lens), appear to be lacking in invertebrate chordates. Editor notes: consder adding placodal ectoderm as a distinct class? Also place placodal ectoderm as develops_from ectoderm
is_a: UBERON:0001048 ! primordium
relationship: part_of UBERON:0000924
intersection_of: UBERON:0001048 ! primordium
intersection_of: part_of UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0005086
name: hair follicle placode
def: "An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud[GO]." [GO:0060789]
synonym: "hair gem" RELATED [ISBN:9780878932504]
synonym: "hair peg" RELATED [ISBN:9780878932504]
synonym: "vibrissa placode" NARROW []
is_a: UBERON:0005085 {source="GO"} ! ectodermal placode
relationship: develops_into UBERON:0002073
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0002073 ! hair follicle
relationship: develops_from UBERON:0001003 ! epidermis
relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! skin basal layer
relationship: develops_into UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0005087
name: tooth placode
def: "An tooth placode is a thickening of the ectoderm that will give rise to the tooth bud[GO]." [GO:0060790]
comment: Location notes: In mammals this may be located in the alveolar ridges, but note that some species such as zebrafish have ceratobranchial teeth. Sharks have dermal denticles that share developmental origins. Currently we don't include location information due to this diversity, but in future we may include specific subclasses and/or taxon GCIs.
synonym: "dental placode" EXACT [Obol:automatic]
synonym: "dental primordium" EXACT [ZFA:0001153]
synonym: "odontogenic placode" EXACT [Obol:automatic]
synonym: "tooth germ" RELATED [ZFA:0001153]
xref: BTO:0001511
xref: TAO:0001153
xref: ZFA:0001153
property_value: UBPROP:0000001 "Placode that develops into a tooth. The placode is a thickening of the pharyngeal epithelium.[TAO]" xsd:string
is_a: UBERON:0005085 {source="GO"} ! ectodermal placode
relationship: develops_into UBERON:0001091
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0001091 ! calcareous tooth
relationship: develops_into UBERON:0001091 ! calcareous tooth
relationship: has_developmental_contribution_from UBERON:0004362 {notes="check for other species", source="Wikipedia:Tooth_development"} ! pharyngeal arch 1
[Term]
id: UBERON:0005088
name: sebaceous gland placode
def: "A sebaceous gland placode is a thickening of the ectoderm that will give rise to the sebaceous gland bud[GO]." [GO:0060791]
comment: todo - add bud
is_a: UBERON:0005085 {source="GO"} ! ectodermal placode
relationship: develops_into UBERON:0001821
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0001821 ! sebaceous gland
relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! skin basal layer
relationship: develops_into UBERON:0001821 ! sebaceous gland
[Term]
id: UBERON:0005089
name: sweat gland placode
def: "An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud[GO]." [GO:0060793]
comment: todo - add bud
is_a: UBERON:0005085 {source="GO"} ! ectodermal placode
relationship: develops_into UBERON:0001820
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0001820 ! sweat gland
relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! skin basal layer
relationship: develops_into UBERON:0001820 ! sweat gland
[Term]
id: UBERON:0005090
name: muscle structure
def: "Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms[GO]." [GO:0061061]
xref: FBbt:00005073
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0005091
name: left horn of sinus venosus
xref: EHDAA2:0001840
xref: EHDAA:482
xref: EMAPA:16238
xref: FMA:70321
xref: VHOG:0000488
is_a: UBERON:0002050 {source="FMA"} ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: in_left_side_of UBERON:0002063 ! sinus venosus
[Term]
id: UBERON:0005092
name: right horn of sinus venosus
xref: EHDAA2:0001841
xref: EHDAA:484
xref: EMAPA:16239
xref: FMA:70318
xref: VHOG:0000489
is_a: UBERON:0002050 {source="FMA"} ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: in_right_side_of UBERON:0002063 ! sinus venosus
[Term]
id: UBERON:0005093
name: cement gland
def: "A simple mucus-secreting structure that is positioned at the front of the embryo, attaches the newly hatched embryo to a support before the hatchling can swim well or feed, and marks the anterior-most dorsal ectoderm[XAO]." [GO:0071570, XAO:0000033]
subset: organ_slim
xref: AAO:0010373
xref: BTO:0002738
xref: XAO:0000033
property_value: UBPROP:0000001 "A simple mucus-secreting structure that is positioned at the front of the embryo, attaches the newly hatched embryo to a support before the hatchling can swim well or feed, and marks the anterior-most dorsal ectoderm.[AAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002530 ! gland
[Term]
id: UBERON:0005094
name: beak
def: "The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary ramaphotheca, mandibular ramaphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus[GO]. The beak, bill or rostrum is an external anatomical structure of birds which is used for eating and for grooming, manipulating objects, killing prey, probing for food, courtship and feeding young. The term beak is also used to refer to a similar mouthpart in some Ornithischian dinosaurs, monotremes, cephalopods, cetaceans, pufferfishes, turtles, Anuran tadpoles and sirens[WP]." [GO:0071728, Wikipedia:Beak]
comment: TODO - add superclass
synonym: "avian beak" EXACT []
synonym: "bill" RELATED []
synonym: "rostrum" RELATED []
xref: MESH:A.13.114
is_a: UBERON:0003102 ! surface structure
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0005095
name: kidney rudiment
def: "." [GO:0072003]
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0007687 {source="GO"} ! kidney field
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0005096
name: descending thin limb
alt_id: UBERON:0005165
def: "The descending thin limb is a part of the loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the loop of Henle[GO]." [GO:0072022, Wikipedia:Descending_limb_of_loop_of_Henle]
subset: uberon_slim
synonym: "descending limb of henle%27s loop" RELATED [Wikipedia:Descending_limb_of_loop_of_Henle]
synonym: "descending limb of loop of henle" RELATED [Wikipedia:Descending_limb_of_loop_of_Henle]
synonym: "descending thin limb of loop of Henle" EXACT []
synonym: "loop of Henle descending thin limb" EXACT []
synonym: "loop of henle thin descending limb" EXACT [MA:0002625]
synonym: "pars descendens (tubulus attenuatus)" EXACT [FMA:17719]
synonym: "thin descending limb" EXACT []
synonym: "thin descending limb of loop of henle" RELATED [Wikipedia:Descending_limb_of_loop_of_Henle]
synonym: "thin descending limb of the loop of henle" RELATED [Wikipedia:Descending_limb_of_loop_of_Henle]
synonym: "thin descending loop of henle" RELATED [Wikipedia:Descending_limb_of_loop_of_Henle]
xref: EMAPA:28325
xref: EMAPA:28355
xref: EMAPA:29681
xref: FMA:17719
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png
xref: MA:0002625
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001288 ! loop of Henle
relationship: part_of UBERON:0004136 ! intermediate tubule
[Term]
id: UBERON:0005097
name: connecting tubule
def: "The connecting tubule is a tubular segment of the nephron; it connects the distal convoluted tubule to the collecting duct[GO]." [GO:0072027, Wikipedia:Connecting_tubule]
synonym: "renal connecting tubule" EXACT [MA:0002610]
synonym: "tubulus renalis arcuatus" RELATED LATIN [Wikipedia:Connecting_tubule]
xref: BTO:0004539
xref: EMAPA:27758
xref: EMAPA:27790
xref: EMAPA:27865
xref: EMAPA:28011
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png
xref: MA:0002610
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0007685 ! region of nephron tubule
relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme
[Term]
id: UBERON:0005099
name: short descending thin limb
def: "The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology[GO]." [GO:0072063]
comment: TODO - epithelium types
is_a: UBERON:0004211 ! nephron epithelium
is_a: UBERON:0006914 ! squamous epithelium
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0005100
name: long descending thin limb
def: "The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla[GO]." [GO:0072064]
is_a: UBERON:0004211 ! nephron epithelium
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0005101
name: early distal convoluted tubule
def: "The early distal convoluted tubule contains DCT cells and is vasopressin-insensitive[GO]." [GO:0072067]
xref: EMAPA:28393
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0008408 ! distal tubular epithelium
relationship: part_of UBERON:0001292 ! distal convoluted tubule
[Term]
id: UBERON:0005102
name: late distal convoluted tubule
def: "The late distal convoluted tubule contains DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]." [GO:0072068]
comment: TODO - CL
xref: EMAPA:28393
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0008408 ! distal tubular epithelium
relationship: part_of UBERON:0001292 ! distal convoluted tubule
[Term]
id: UBERON:0005103
name: mesonephric epithelium
def: "An epithelium that is part of a mesonephros [Obol]." [OBOL:automatic]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004819 ! kidney epithelium
relationship: part_of UBERON:0000080
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005104
name: anterior mesonephric tubule
def: "The anterior mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]." [GO:0072165]
is_a: UBERON:0000083 ! mesonephric tubule
[Term]
id: UBERON:0005105
name: posterior mesonephric tubule
def: "The posterior mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]." [GO:0072166]
xref: EMAPA:30571
xref: EMAPA:30574
is_a: UBERON:0000083 ! mesonephric tubule
[Term]
id: UBERON:0005106
name: metanephric tubule
def: "A metanephric tubule is an epithelial tube that is part of the metanephros[GO]." [GO:0072173]
xref: VHOG:0001526
is_a: UBERON:0003914 ! epithelial tube
is_a: UBERON:0005108 ! metanephric epithelium
is_a: UBERON:0006555 ! excretory tube
relationship: part_of UBERON:0000081
intersection_of: UBERON:0003914 ! epithelial tube
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005107
name: metanephric cap
def: "The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip[GO]. Mesenchyme closely apposed to the tips of the buds is called cap mesenchyme; it will later go on to form nephrons etc[GUDMAP]." [GO:0072185, http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron]
comment: TODO - check EMAPA
synonym: "cap mesenchyme" EXACT [EMAPA:27621]
xref: EMAPA:27621
xref: MA:0002997
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0003220 ! metanephric mesenchyme
relationship: surrounds UBERON:0000084 ! ureteric bud
[Term]
id: UBERON:0005108
name: metanephric epithelium
def: "An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure[GO]." [GO:0072207]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004819 ! kidney epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005109
name: metanephric smooth muscle tissue
def: "Any smooth muscle tissue that is part of a metanephros." [GO:0072208, UBERON:cjm]
is_a: UBERON:0005321 ! mesonephric smooth muscle tissue
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005110
name: metanephric nephron
alt_id: UBERON:0005142
def: "A metanephric nephron is the functional unit of the metanephros[GO]." [GO:0072273]
xref: VHOG:0000719
is_a: UBERON:0001285 ! nephron
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001285 ! nephron
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: develops_from UBERON:0003220 {source="Wikipedia:Nephron"} ! metanephric mesenchyme
relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005111
name: metanephric pyramid
def: "Metanephric pyramids are the conical masses that constitute the renal medulla in a metanephros; they contain the loops of Henle and the medullary collecting ducts[GO]." [GO:0072211]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004200 ! kidney pyramid
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004200 ! kidney pyramid
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005113
name: metanephric cortex mesenchyme
xref: EHDAA2:0001140
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0010531 {source="EHDAA2"} ! metanephros induced blastemal cells
[Term]
id: UBERON:0005114
name: metanephric ascending thin limb
def: "The metanephric ascending thin limb is a segment of a nephron tubule in the metanephros lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent[GO]." [GO:0072218]
is_a: UBERON:0004193 ! loop of Henle ascending limb thin segment
is_a: UBERON:0005146 ! metanephric nephron tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004193 ! loop of Henle ascending limb thin segment
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005115
name: metanephric cortical collecting duct
def: "The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex[GO]." [GO:0072219]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004203 ! cortical collecting duct
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004203 ! cortical collecting duct
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005116
name: metanephric descending thin limb
def: "It extends to the tip of the metanephric loop of Henle[GO]." [GO:0072220]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005096 ! descending thin limb
relationship: part_of UBERON:0000081
intersection_of: UBERON:0005096 ! descending thin limb
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005117
name: metanephric distal convoluted tubule
def: "The metanephric distal convoluted tubule is a portion of the metanephric nephron tubule that connects the metanephric loop of Henle to the collecting duct[GO]." [GO:0072221]
xref: VHOG:0001569
is_a: UBERON:0001292 ! distal convoluted tubule
is_a: UBERON:0005129 ! metanephric distal tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001292 ! distal convoluted tubule
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005118
name: metanephric early distal convoluted tubule
def: "The metanephric early distal convoluted tubule contains metanephric DCT cells and is vasopressin-insensitive[GO]." [GO:0072222]
is_a: UBERON:0005101 ! early distal convoluted tubule
is_a: UBERON:0005134 ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0005101 ! early distal convoluted tubule
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005119
name: metanephric glomerular mesangium
def: "The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus[GO]." [GO:0072223]
is_a: UBERON:0002320 ! glomerular mesangium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0002320 ! glomerular mesangium
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005120
name: metanephric late distal convoluted tubule
def: "The metanephric late distal convoluted tubule contains metanephric DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]." [GO:0072225]
is_a: UBERON:0005102 ! late distal convoluted tubule
is_a: UBERON:0005134 ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0005102 ! late distal convoluted tubule
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005121
name: metanephric long descending thin limb bend
def: "The metanephric long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment in the metanephros[GO]." [GO:0072226]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004206 ! long descending thin limb bend
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004206 ! long descending thin limb bend
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005122
name: metanephric macula densa
def: "The metanephric macula densa is an area of specialized cells in the distal tubule of the metanephros that makes contact with the vascular pole of the glomerulus[GO]." [GO:0072227]
is_a: UBERON:0002335 ! macula densa
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000081
intersection_of: UBERON:0002335 ! macula densa
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005123
name: metanephric prebend segment
def: "The metanephric prebend segment is a part of the metanephric descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability[GO]." [GO:0072228]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004207 ! prebend segment
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004207 ! prebend segment
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005124
name: metanephric proximal convoluted tubule
def: "The metanephric proximal convoluted tubule is the most proximal portion of the metanephric proximal tubule and extends from the metanephric glomerular capsule to the metanephric proximal straight tubule[GO]." [GO:0072229]
xref: VHOG:0001570
is_a: UBERON:0001287 ! proximal convoluted tubule
is_a: UBERON:0005151 ! metanephric proximal tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001287 ! proximal convoluted tubule
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005125
name: metanephric proximal straight tubule
def: "The metanephric proximal straight tubule is the part of the metanephric descending limb that extends from the metanephric proximal convoluted tubule to the metanephric descending thin tubule[GO]." [GO:0072230]
comment: todo - place mammalian xrefs here rather than at parent
property_value: "homologous_to" XAO:0000332
is_a: UBERON:0001290 ! proximal straight tubule
is_a: UBERON:0005146 ! metanephric nephron tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001290 ! proximal straight tubule
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005126
name: metanephric S1
def: "The S1 portion is the initial portion of the metanephric proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]." [GO:0072231]
is_a: UBERON:0004196 ! proximal convoluted tubule segment 1
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004196 ! proximal convoluted tubule segment 1
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005127
name: metanephric thick ascending limb
def: "At the macula densa, the thick ascending limb connects to the distal convoluted tubule[GO]." [GO:0072233]
is_a: UBERON:0001291 ! thick ascending limb of loop of Henle
is_a: UBERON:0005129 ! metanephric distal tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001291 ! thick ascending limb of loop of Henle
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005129
name: metanephric distal tubule
alt_id: UBERON:0005150
def: "The metanephric distal tubule is a metanephric nephron tubule that begins at the metanephric macula densa and extends to the metanephric connecting tubule[GO]." [GO:0072235]
is_a: UBERON:0004135 ! distal tubule
is_a: UBERON:0005146 ! metanephric nephron tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004135 ! distal tubule
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005130
name: metanephric loop of Henle
def: "The metanephric loop of Henle is a metanephric nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule in the metanephros[GO]." [GO:0072236]
is_a: UBERON:0001288 ! loop of Henle
is_a: UBERON:0005146 ! metanephric nephron tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001288 ! loop of Henle
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0004136 ! intermediate tubule
[Term]
id: UBERON:0005132
name: metanephric long nephron
def: "Long nephrons are associated with juxtamedullary glomeruli and extend into the inner medulla in the metanephros[GO]." [GO:0072238]
is_a: UBERON:0004194 ! long nephron
is_a: UBERON:0005110 ! metanephric nephron
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004194 ! long nephron
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005133
name: metanephric glomerulus vasculature
alt_id: UBERON:0005143
def: "The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus[GO]." [GO:0072239]
is_a: UBERON:0004190 ! glomerulus vasculature
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004190 ! glomerulus vasculature
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005134
name: metanephric nephron epithelium
def: "The metanephric nephron epithelium is a tissue that covers the surface of a nephron in the metanephros[GO]." [GO:0072243]
is_a: UBERON:0004211 ! nephron epithelium
is_a: UBERON:0005108 ! metanephric epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004211 ! nephron epithelium
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
relationship: surrounds UBERON:0001285 ! nephron
[Term]
id: UBERON:0005135
name: metanephric glomerular epithelium
def: "A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros[GO]." [GO:0072244]
is_a: UBERON:0004188 ! glomerular epithelium
is_a: UBERON:0005134 ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004188 ! glomerular epithelium
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005136
name: metanephric glomerular endothelium
def: "The metanephric glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus of the metanephros[GO]." [GO:0072264]
is_a: UBERON:0004189 ! glomerular endothelium
is_a: UBERON:0005135 ! metanephric glomerular epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004189 ! glomerular endothelium
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005137
name: metanephric capsule
alt_id: UBERON:0005112
def: "The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage[GO]." [GO:0072213]
is_a: UBERON:0002015 ! kidney capsule
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000081
intersection_of: UBERON:0002015 ! kidney capsule
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005139
name: metanephric long descending thin limb
def: "The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla[GO]." [GO:0072269]
is_a: UBERON:0005100 ! long descending thin limb
is_a: UBERON:0005134 ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0005100 ! long descending thin limb
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005140
name: metanephric short nephron
def: "Short nephrons are associated with mid-cortical and superficial glomeruli, are situated entirely in the outer medulla, and have no thin ascending limb[GO]." [GO:0072270]
is_a: UBERON:0004195 ! short nephron
is_a: UBERON:0005110 ! metanephric nephron
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004195 ! short nephron
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005141
name: metanephric short descending thin limb
def: "The metanephric short descending thin limb is the descending thin limb of a short nephron in the metanephros that has a squamous epithelial morphology[GO]." [GO:0072271]
is_a: UBERON:0005099 ! short descending thin limb
is_a: UBERON:0005134 ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0005099 ! short descending thin limb
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005144
name: metanephric glomerular capillary
def: "This process pertains to the initial formation of a structure from unspecified parts[GO]." [GO:0072277]
is_a: UBERON:0004212 ! glomerular capillary
is_a: UBERON:0005135 ! metanephric glomerular epithelium
is_a: UBERON:0005146 ! metanephric nephron tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004212 ! glomerular capillary
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005145
name: metanephric comma-shaped body
def: "The metanephric comma-shaped body is the precursor structure to the metanephric S-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]." [GO:0072278]
is_a: UBERON:0004198 ! comma-shaped body
is_a: UBERON:0005146 ! metanephric nephron tubule
is_a: UBERON:0010535 ! primitive metanephric nephron
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004198 ! comma-shaped body
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005146
name: metanephric nephron tubule
alt_id: UBERON:0005128
alt_id: UBERON:0005152
def: "A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros[GO]." [GO:0072282]
is_a: UBERON:0001231 ! nephron tubule
is_a: UBERON:0005106 ! metanephric tubule
is_a: UBERON:0005134 ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001231 ! nephron tubule
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: develops_from UBERON:0003220 {source="ISBN:9780878932504"} ! metanephric mesenchyme
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005147
name: metanephric renal vesicle
def: "The renal vesicle is the primordial structure of the metanephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]." [GO:0072283]
synonym: "metanephric vesicle" EXACT []
xref: EHDAA2:0001245
xref: EHDAA:9346
xref: EMAPA:27678
xref: EMAPA:27829
is_a: UBERON:0004209 ! renal vesicle
is_a: UBERON:0005134 ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004209 ! renal vesicle
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: develops_from UBERON:0005113 {source="EHDAA2"} ! metanephric cortex mesenchyme
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005148
name: metanephric S-shaped body
def: "The metanephric S-shaped body is the successor of the metanephric comma-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]." [GO:0072284]
is_a: UBERON:0005146 ! metanephric nephron tubule
is_a: UBERON:0005330 ! mesonephric nephron epithelium
is_a: UBERON:0005332 ! mesonephric S-shaped body
is_a: UBERON:0010535 ! primitive metanephric nephron
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004199 ! S-shaped body
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0005322 {notes="todo - automate"} ! mesonephric nephron
[Term]
id: UBERON:0005149
name: metanephric connecting tubule
def: "The metanephric connecting tubule is a tubular segment of the metanephric nephron; it connects the distal convoluted tubule to the collecting duct in the metanephros[GO]." [GO:0072286]
is_a: UBERON:0005097 ! connecting tubule
is_a: UBERON:0005146 ! metanephric nephron tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0005097 ! connecting tubule
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005151
name: metanephric proximal tubule
alt_id: UBERON:0005131
def: "The metanephric proximal tubule is a metanephric nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle in the metanephros. It has a brush border epithelial morphology[GO]." [GO:0072288]
is_a: UBERON:0004134 ! proximal tubule
is_a: UBERON:0005146 ! metanephric nephron tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004134 ! proximal tubule
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005153
name: epithelial bud
def: "A bud is a protrusion that forms from an epithelial sheet by localized folding." [GO:0060572]
is_a: UBERON:0005157 ! epithelial fold
[Term]
id: UBERON:0005154
name: epithelial cord
comment: TODO - add superclass of developing structure
xref: EHDAA2:0004052
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0005155
name: open tracheal system
def: "An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster." [GO:0007424]
subset: uberon_slim
synonym: "invertebrate tracheal system" EXACT []
synonym: "open tracheal system" EXACT []
synonym: "tracheal system" BROAD SENSU [FBbt:00005024]
xref: BTO:0003870
xref: FBbt:00005024
xref: SPD:0000427
xref: TADS:0000043
is_a: UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0005156
name: reproductive structure
def: "An anatomical structure that is part of the reproductive system." [GOC:cjm]
synonym: "reproductive system structure" EXACT []
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000990
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: part_of UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0000990 ! reproductive system
[Term]
id: UBERON:0005157
name: epithelial fold
def: "An epithelial sheet bent on a linear axis." [GO:0060571]
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0005158
name: parenchyma of central nervous system
def: "A parenchyma that is part of a central nervous system [Obol]." [OBOL:automatic]
synonym: "central nervous system parenchyma" EXACT [OBOL:automatic]
synonym: "CNS parenchyma" EXACT [OBOL:automatic]
synonym: "parenchyma of central nervous system" EXACT []
synonym: "parenchyma of CNS" EXACT [OBOL:automatic]
is_a: UBERON:0000353 ! parenchyma
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001017
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001017 ! central nervous system
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0005159
name: pyramid of medulla oblongata
def: "The anterior or ventral portion of the medulla oblongata is named the pyramid and lies between the anterior median fissure and the antero-lateral sulcus. Its upper end is slightly constricted, and between it and the pons the fibers of the abducent nerve emerge; a little below the pons it becomes enlarged and prominent, and finally tapers into the anterior funiculus of the medulla spinalis, with which, at first sight, it appears to be directly continuous[WP]." [Wikipedia:Pyramid_(brainstem)]
synonym: "lobule VIII of Larsell" EXACT [FMA:75254]
synonym: "medullary pyramid" EXACT [FMA:75254]
synonym: "pyramid of medulla" EXACT [FMA:75254]
synonym: "pyramid of medulla oblongata" EXACT [Wikipedia:Pyramid_(brainstem)]
xref: BM:Me-Py
xref: FMA:75254
xref: SCTID:9535007
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0005160
name: vestigial structure
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0005161
name: pelvic spur
def: "Pelvic spurs are the externally visible portion of the vestigial remnants of legs found on each side of the vent in primitive snakes, such as boas and pythons[1]. The remnants of a pelvis and femur, which have no connection with the spine, simply 'float' in the muscle mass[1]. The femur protrudes from the snake's body and is covered by a corneal spur, which resembles a claw[1]. Males' spurs are generally longer and more pointed than females', and are used for clasping and tickling during courtship and mating[2], as well as combat with other males in some species" [Wikipedia:Pelvic_spur]
synonym: "anal spur" EXACT [Wikipedia:Anal_spur]
is_a: UBERON:0000026 ! appendage
is_a: UBERON:0005160 ! vestigial structure
[Term]
id: UBERON:0005162
name: multi cell component structure
def: "A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part." [CARO:0001000]
comment: AO notes: we go with the FMA classification rather than the CARO one. FMA def: "Anatomical cluster which has as direct parts cell parts from two or more cells."
subset: upper_level
synonym: "multi-cell-component structure" EXACT [CARO:0001000]
xref: AAO:0011000
xref: CARO:0001000
xref: FBbt:00007060
xref: FMA:83115
is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster
[Term]
id: UBERON:0005164
name: ascending limb of loop of Henle
def: "the distal part of the loop of Henle that is impermeable to water and actively pumps sodium out of the filtrate to generate the hypertonic interstitium that drives countercurrent exchange; it consists of an initial very thin segment lined by simple squamous epithelium followed by a distal thick segment lined by simple cuboidal epithelium[MP]." [MP:0011342, Wikipedia:Ascending_limb_of_loop_of_Henle]
comment: TODO: thick/thin check. Also relationship to distal tubule. We need a home for MA:0002634-renal straight tubule
subset: uberon_slim
synonym: "ascending limb" BROAD []
synonym: "ascending limb of Henle's loop" EXACT []
synonym: "distal straight tubule" RELATED []
synonym: "loop of Henle ascending limb" EXACT [MP:0011342]
xref: FMA:17717
xref: MA:0001676
xref: ncithesaurus:Ascending_Limb_of_the_Henle_s_Loop
xref: SCTID:245434005
is_a: UBERON:0004135 ! distal tubule
relationship: part_of UBERON:0001288 ! loop of Henle
[Term]
id: UBERON:0005167
name: papillary duct
def: "The terminal portions of the medullary collecting ducts are the papillary ducts, which end at the renal papilla and empty into a minor calyx." [Encyclopedia:http://encyclopedia.thefreedictionary.com/]
synonym: "Bellini's duct" RELATED [MP:0011331]
synonym: "duct of Bellini" RELATED []
synonym: "papillary duct of kidney" EXACT [SCTID:110623009]
xref: BTO:0004540
xref: MA:0001646
xref: SCTID:110623009
is_a: UBERON:0001232 ! collecting duct of renal tubule
[Term]
id: UBERON:0005168
name: interlobular vein
def: "The venae stellatae join to form the interlobular veins, which pass inward between the rays, receive branches from the plexuses around the convoluted tubules, and, having arrived at the bases of the renal pyramids, join with the venae rectae" [Wikipedia:Interlobular_veins]
synonym: "venae interlobulares renis" EXACT [FMA:71634, FMA:TA]
synonym: "venae interlobulares renis" RELATED LATIN [Wikipedia:Interlobular_veins]
xref: EMAPA:28218
xref: FMA:71634
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Gray1128.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0002594
is_a: UBERON:0005269 ! renal cortex vein
disjoint_from: UBERON:0009887 ! interlobar vein
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0005169
name: interstitial tissue
def: "connective tissue between the cellular elements of a structure." [http://medical-dictionary.thefreedictionary.com/tissue]
comment: Editors note: specify differentia from stroma
synonym: "interstitium" EXACT []
xref: FMA:86301
xref: SCTID:85293002
is_a: UBERON:0003891 {source="FMA"} ! stroma
[Term]
id: UBERON:0005170
name: ovary stratum granulosum
subset: vertebrate_core
synonym: "granulosa cell layer of ovarian follicle" EXACT [FMA:18660]
synonym: "membrana granulosa of ovarian follicle" EXACT [FMA:18660]
synonym: "stratum granulosum of ovarian follicle" EXACT [FMA:18660]
xref: FMA:18660
xref: MA:0001460
xref: SCTID:258971005
xref: TAO:0001112
xref: ZFA:0001112
is_a: UBERON:0000158 ! membranous layer
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001305 ! ovarian follicle
[Term]
id: UBERON:0005171
name: hepatic duct
def: "The hepatic duct is the duct that leads from the liver to the bile duct[GO]. A duct that carries bile from the liver to the small intestine[ZFA]." [GO:0061011]
comment: TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same
subset: vertebrate_core
xref: EHDAA2:0000741
xref: EHDAA:3049
xref: EMAPA:16843
xref: EMAPA:18672
xref: galen:HepaticDuct
xref: MA:0000357
xref: ncithesaurus:Hepatic_Duct
xref: OpenCyc:Mx4rvWo8WJwpEbGdrcN5Y29ycA
xref: SCTID:245399002
xref: TAO:0001100
xref: VHOG:0000219
xref: ZFA:0001100
property_value: UBPROP:0000001 "A duct that carries bile from the liver to the small intestine.[TAO]" xsd:string
is_a: UBERON:0002394 ! bile duct
relationship: continuous_with UBERON:0002107 ! liver
relationship: part_of UBERON:0001173 ! biliary tree
[Term]
id: UBERON:0005172
name: abdomen organ
def: "An organ that is part of an abdomen [Obol]." [OBOL:automatic]
subset: organ_slim
xref: MA:0000522
xref: SCTID:272631008
is_a: UBERON:0005173 ! abdominal segment organ
relationship: part_of UBERON:0000916
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0005173
name: abdominal segment organ
xref: MA:0000529
is_a: UBERON:0005177 ! trunk organ
relationship: part_of UBERON:0002417
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0005174
name: back organ
def: "An organ that is part of a back [Obol]." [OBOL:automatic]
subset: organ_slim
xref: MA:0001901
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001137
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0001137 ! dorsum
relationship: part_of UBERON:0001137 ! dorsum
[Term]
id: UBERON:0005175
name: chest organ
def: "An organ that is part of a chest [Obol]." [OBOL:automatic]
subset: organ_slim
xref: MA:0000552
is_a: UBERON:0005181 ! thoracic segment organ
relationship: part_of UBERON:0001443
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0005176
name: tooth enamel organ
def: "." [https://sourceforge.net/tracker/?func=detail&aid=3556489&group_id=76834&atid=994726, Wikipedia:Enamel_organ]
comment: Editor notes: some sources treat the dental organ as epithelium - we treat it as the mereological sum of dentail epithelium plus dental papilla (consistent with treatment in many AOs), but this may be revised.Development notes: NOT develeops_from NC[UBERONREF:0000002]. Alternate definitioon: A cellular aggregation seen in histologic sections of a developing tooth. It lies above a condensation of ectomesenchymal cells called the odontogenic papilla. Historically, enamel organ has been the term to describe this structure, but it was attempted unsuccessfully in recent years to change the name to dental organ in order to better represent its multiple functions apart from enamel formation[WP]
subset: vertebrate_core
synonym: "dental organ" EXACT [ZFA:0005138]
synonym: "enamel organ" EXACT [MP:0010747]
synonym: "odontogenic organ" RELATED []
synonym: "organum enameleum" RELATED LATIN [Wikipedia:Enamel_organ]
xref: BTO:0001722
xref: MA:0001604
xref: MESH:A.14.254.900.720.265
xref: SCTID:362863002
xref: TAO:0005138
xref: ZFA:0005138
property_value: RO:0002161 NCBITaxon:8782
property_value: UBPROP:0000001 "A structure that is involved in tooth formation. A bell shape two layer epithelial structure that descends toward the ceratobranchial 5 bone, enclosing the dental mesenchyme. At later times in tooth development the cells at the apex of the bell may be involved in enameloid formation. This structure remains at the base of the erupted tooth and is the source of replacement teeth.[TAO]" xsd:string
is_a: UBERON:0004906 ! ectodermal gut
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0005087 {source="ZFA"} ! tooth placode
relationship: part_of UBERON:0001091 {source="MA-abduced"} ! calcareous tooth
[Term]
id: UBERON:0005177
name: trunk organ
def: "An organ that is part of a trunk [Obol]." [OBOL:automatic]
subset: organ_slim
xref: MA:0000516
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0002100
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0005178
name: thoracic cavity organ
def: "An organ that is part of a thoracic cavity [Obol]." [OBOL:automatic]
xref: MA:0000557
is_a: UBERON:0005181 ! thoracic segment organ
relationship: part_of UBERON:0002224
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0005179
name: pelvis organ
def: "An organ that is part of the pelvic region[Obol]." [OBOL:automatic]
subset: organ_slim
xref: MA:0000543
is_a: UBERON:0005173 ! abdominal segment organ
relationship: part_of UBERON:0002355
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0005180
name: lymph organ
def: "An organ that is part of a lymph [Obol]." [OBOL:automatic]
is_obsolete: true
[Term]
id: UBERON:0005181
name: thoracic segment organ
synonym: "upper body organ" RELATED [MA:0000563]
xref: MA:0000563
is_a: UBERON:0005177 ! trunk organ
relationship: part_of UBERON:0000915
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0005184
name: hair medulla
def: "Innermost layer of the hair shaft." [Wikipedia:Bone_marrow_of_ovary_(hair)]
synonym: "medulla of hair shaft" RELATED [BTO:0004671]
xref: BTO:0004671
xref: MA:0000158
xref: SCTID:318929009
is_a: UBERON:0000958 ! medulla
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001037
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0001037 ! strand of hair
relationship: part_of UBERON:0001037 ! strand of hair
[Term]
id: UBERON:0005185
name: renal medulla collecting duct
def: "A collecting duct of renal tubule that is part of a renal medulla [Obol]." [OBOL:automatic]
synonym: "medullary collecting duct" EXACT [EMAPA:28061]
xref: EMAPA:28061
xref: MA:0002935
is_a: UBERON:0001232 ! collecting duct of renal tubule
relationship: part_of UBERON:0000362
intersection_of: UBERON:0001232 ! collecting duct of renal tubule
intersection_of: part_of UBERON:0000362 ! renal medulla
relationship: part_of UBERON:0000362 ! renal medulla
[Term]
id: UBERON:0005186
name: outer renal medulla collecting duct
def: "A collecting duct of renal tubule that is part of a outer medulla of kidney [Obol]." [OBOL:automatic]
xref: MA:0002599
is_a: UBERON:0005185 ! renal medulla collecting duct
relationship: part_of UBERON:0001293
intersection_of: UBERON:0001232 ! collecting duct of renal tubule
intersection_of: part_of UBERON:0001293 ! outer medulla of kidney
relationship: part_of UBERON:0001293 ! outer medulla of kidney
[Term]
id: UBERON:0005187
name: inner renal medulla collecting duct
def: "A collecting duct of renal tubule that is part of a inner medulla of kidney [Obol]." [OBOL:automatic]
synonym: "papillary collecting duct" RELATED [MA:0002598]
xref: MA:0002598
is_a: UBERON:0005185 ! renal medulla collecting duct
relationship: part_of UBERON:0001294
intersection_of: UBERON:0001232 ! collecting duct of renal tubule
intersection_of: part_of UBERON:0001294 ! inner medulla of kidney
relationship: part_of UBERON:0001294 ! inner medulla of kidney
[Term]
id: UBERON:0005188
name: caput epididymis
is_obsolete: true
replaced_by: UBERON:0004358
[Term]
id: UBERON:0005189
name: corpus epididymis
is_obsolete: true
replaced_by: UBERON:0004359
[Term]
id: UBERON:0005190
name: cauda epididymis
is_obsolete: true
replaced_by: UBERON:0004360
[Term]
id: UBERON:0005191
name: cervical artery
def: "An artery that is part of a uterine cervix [Obol]." [OBOL:automatic]
xref: MA:0001936
xref: ncithesaurus:Cervical_Artery
is_a: UBERON:0002493 ! uterine artery
is_a: UBERON:0004801 ! cervix epithelium
relationship: part_of UBERON:0000002
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0000002 ! uterine cervix
relationship: part_of UBERON:0000002 ! uterine cervix
[Term]
id: UBERON:0005192
name: deferent duct artery
def: "An artery that is part of a vas deferens [Obol]." [OBOL:automatic]
xref: MA:0001940
is_a: UBERON:0001637 ! artery
is_a: UBERON:0004806 ! vas deferens epithelium
relationship: part_of UBERON:0001000
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001000 ! vas deferens
relationship: part_of UBERON:0001000 ! vas deferens
[Term]
id: UBERON:0005193
name: ethmoidal artery
def: "An artery that is part of a ethmoid [Obol]." [OBOL:automatic]
xref: MA:0001949
xref: ncithesaurus:Ethmoidal_Artery
xref: SCTID:244222007
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0005744 ! cranial conduit
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001679
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001679 ! ethmoid bone
relationship: part_of UBERON:0001679 ! ethmoid bone
[Term]
id: UBERON:0005194
name: thoracic vein
def: "A vein that is part of a thorax [Obol]." [OBOL:automatic]
xref: MA:0002235
xref: ncithesaurus:Thoracic_Vein
xref: SCTID:281472008
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003834 ! thoracic segment blood vessel
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0005195
name: deferent duct vein
def: "A vein that is part of a vas deferens [Obol]." [OBOL:automatic]
xref: MA:0002100
is_a: UBERON:0001638 ! vein
is_a: UBERON:0004806 ! vas deferens epithelium
relationship: part_of UBERON:0001000
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001000 ! vas deferens
relationship: part_of UBERON:0001000 ! vas deferens
[Term]
id: UBERON:0005196
name: spleen germinal center
def: "A germinal center that is part of the spleen. The spleen germinal center is located in a secondary B follicle in the white pulp of the spleen." [CL:tm, https://github.com/cmungall/uberon/issues/6]
synonym: "germinal center of spleen" EXACT []
synonym: "spleen follicle center" EXACT [MP:0008474]
synonym: "spleen GC" EXACT [MP:0008474]
synonym: "splenic germinal center" EXACT [MP:0008474]
xref: MA:0000764
xref: ncithesaurus:Spleen_Germinal_Center
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0010754 ! germinal center
relationship: part_of UBERON:0002106
intersection_of: UBERON:0010754 ! germinal center
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0004042 {source="CL:tm"} ! spleen secondary B follicle
[Term]
id: UBERON:0005197
name: segmental spinal nerve
comment: todo - check
synonym: "cervical segmental spinal nerves C1-7" EXACT [EHDAA2:0001822]
xref: EHDAA2:0001822
xref: EHDAA:3778
xref: EMAPA:16990
xref: EMAPA:25149
xref: MA:0000234
xref: VHOG:0000920
is_a: UBERON:0001780 {source="MA"} ! spinal nerve
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0000044 {source="EHDAA2"} ! dorsal root ganglion
relationship: develops_from UBERON:0001806 {source="EHDAA2"} ! sympathetic ganglion
[Term]
id: UBERON:0005198
name: coat hair bulb
is_obsolete: true
[Term]
id: UBERON:0005199
name: cervical mammary gland
xref: MA:0000789
is_a: UBERON:0001911 ! mammary gland
relationship: part_of UBERON:0005434
intersection_of: UBERON:0001911 ! mammary gland
intersection_of: part_of UBERON:0005434 ! cervical region
relationship: part_of UBERON:0005434 ! cervical region
[Term]
id: UBERON:0005200
name: thoracic mammary gland
def: "A lactiferous gland that is located in the thoracic region/breast." [UBERON:cjm, Wikipedia:Mammary_gland#Other_mammals]
comment: Most primates have one pair of mammary glands, which are thoracic.
synonym: "anterior mammary gland" RELATED [Wikipedia:Mammary_gland#Other_mammals]
synonym: "breast mammary gland" EXACT []
synonym: "lactiferous gland" BROAD SENSU [FMA:62088]
synonym: "mammary gland" BROAD SENSU [FMA:62088]
xref: EHDAA2:0001056
xref: EHDAA:6524
xref: FMA:62088
xref: MA:0000797
xref: SCTID:31448001
is_a: UBERON:0001911 ! mammary gland
is_a: UBERON:0005175 ! chest organ
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001911 ! mammary gland
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000310 {source="BTO"} ! breast
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0005201
name: cervical trunk
comment: was obsolete as it was defined incorrectly. See Fig97 of The Anatomy of the Laboratory Mouse. May be included in future versions of this ontology that include more detailed relationships and comparisons of the arterial system
xref: http://www.informatics.jax.org/cookbook/figures/figure97.shtml
is_obsolete: true
[Term]
id: UBERON:0005202
name: distal straight tubule macula densa
def: "A macula densa that is part of an ascending limb of loop of Henle [Obol]." [OBOL:automatic]
comment: todo - unify terminology - check DST = TAL? Note EMAPA class appears to refer to this segment
xref: EMAPA:28399
xref: MA:0002604
is_a: UBERON:0002335 ! macula densa
relationship: part_of UBERON:0001291
intersection_of: UBERON:0002335 ! macula densa
intersection_of: part_of UBERON:0001291 ! thick ascending limb of loop of Henle
relationship: part_of UBERON:0001291 {source="MA"} ! thick ascending limb of loop of Henle
relationship: part_of UBERON:0001291 ! thick ascending limb of loop of Henle
relationship: part_of UBERON:0006853 {source="MA"} ! renal cortex tubule
[Term]
id: UBERON:0005203
name: trachea gland
def: "A gland that is part of a submucosa of trachea [Obol]." [OBOL:automatic]
subset: organ_slim
synonym: "glandula trachealis" EXACT [FMA:7473]
synonym: "tubular seromucous gland of trachea" EXACT [FMA:7473]
xref: FMA:7473
xref: MA:0002937
xref: SCTID:197423006
is_a: UBERON:0002530 ! gland
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: part_of UBERON:0002202
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0002202 ! submucosa of trachea
relationship: part_of UBERON:0002202 ! submucosa of trachea
[Term]
id: UBERON:0005204
name: larynx submucosa gland
def: "A gland that is part of a larynx submucosa [Obol]." [OBOL:automatic]
subset: organ_slim
xref: MA:0002729
is_a: UBERON:0002530 ! gland
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0004778
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0004778 ! larynx submucosa
relationship: part_of UBERON:0004778 ! larynx submucosa
[Term]
id: UBERON:0005205
name: vagina stroma
xref: MA:0002737
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000996
intersection_of: UBERON:0003891 ! stroma
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0005206
name: choroid plexus stroma
def: "A stroma that is part of a choroid plexus [Obol]." [OBOL:automatic]
xref: MA:0000825
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001886
intersection_of: UBERON:0003891 ! stroma
intersection_of: part_of UBERON:0001886 ! choroid plexus
relationship: part_of UBERON:0001886 ! choroid plexus
[Term]
id: UBERON:0005207
name: tonsil capsule
def: "A capsule that is part of a tonsil [Obol]." [OBOL:automatic]
xref: MA:0000776
is_a: UBERON:0003893 ! capsule
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002372
intersection_of: UBERON:0003893 ! capsule
intersection_of: part_of UBERON:0002372 ! tonsil
relationship: part_of UBERON:0002372 ! tonsil
[Term]
id: UBERON:0005208
name: right atrium valve
def: "A valve that is part of a right atrium [Obol]." [OBOL:automatic]
synonym: "right atrium valves" RELATED PLURAL [EHDAA2:0000302]
synonym: "valve of right atrium" EXACT [EMAPA:17327]
xref: EHDAA2:0000302
xref: EMAPA:17327
xref: MA:0001871
is_a: UBERON:0003978 ! valve
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002078
intersection_of: UBERON:0003978 ! valve
intersection_of: part_of UBERON:0002078 ! right atrium
relationship: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0005211
name: renal medulla interstitium
def: "tissue surrounding the loop of Henle in the renal medulla.." [Wikipedia:Bone_marrow_of_ovaryry_interstitium]
comment: Function notes: It functions in renal water reabsorption by building up a high hypertonicity, which draws water out of the thin descending limb of the loop of Henle and the collecting duct system. This hypertonicity, in turn, is created by an efflux of urea from the inner medullary collecting duct.
synonym: "kidney medulla interstitium" EXACT [MA:0002619]
xref: EMAPA:18326
xref: MA:0002619
is_a: UBERON:0005215 ! kidney interstitium
relationship: part_of UBERON:0000362
intersection_of: UBERON:0005169 ! interstitial tissue
intersection_of: part_of UBERON:0000362 ! renal medulla
relationship: part_of UBERON:0000362 ! renal medulla
relationship: part_of UBERON:0005215 {source="MA"} ! kidney interstitium
[Term]
id: UBERON:0005212
name: testis interstitial tissue
def: "The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.." [MESH:A.05.360.444.849]
synonym: "interstitium of testis" EXACT [UBERON:cjm]
synonym: "interstitium of the testis" EXACT [EMAPA:18687]
synonym: "testis - interstitial" EXACT [UBERON:cjm]
synonym: "testis interstitium" EXACT [UBERON:cjm]
xref: EMAPA:18687
xref: MA:0002713
xref: SCTID:362280005
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0005169 ! interstitial tissue
relationship: part_of UBERON:0000473
intersection_of: UBERON:0005169 ! interstitial tissue
intersection_of: part_of UBERON:0000473 ! testis
relationship: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0005213
name: outer renal medulla interstitium
def: "A portion of interstitial tissue that is part of a outer medulla of kidney [Obol]." [OBOL:automatic]
synonym: "outer medullary interstitium" EXACT [EMAPA:28337]
xref: EMAPA:28337
xref: MA:0002621
is_a: UBERON:0005211 ! renal medulla interstitium
relationship: part_of UBERON:0001293
intersection_of: UBERON:0005169 ! interstitial tissue
intersection_of: part_of UBERON:0001293 ! outer medulla of kidney
relationship: part_of UBERON:0001293 ! outer medulla of kidney
[Term]
id: UBERON:0005214
name: inner renal medulla interstitium
def: "A portion of interstitial tissue that is part of a inner medulla of kidney [Obol]." [OBOL:automatic]
synonym: "inner medullary interstitium" EXACT [EMAPA:28364]
xref: EMAPA:28364
xref: MA:0002620
is_a: UBERON:0005211 ! renal medulla interstitium
relationship: part_of UBERON:0001294
intersection_of: UBERON:0005169 ! interstitial tissue
intersection_of: part_of UBERON:0001294 ! inner medulla of kidney
relationship: part_of UBERON:0001294 ! inner medulla of kidney
[Term]
id: UBERON:0005215
name: kidney interstitium
def: "The interstitium of the kidney comprises the extravascular intertubular spaces of the renal parenchyma, with their attendant cellular elements and extracellular substances. As we define it here, the interstitium is bounded on all sides by tubular and vascular basement membranes." [doi:10.1038/ki.1991.49]
synonym: "renal interstitium" EXACT [FMA:70983]
synonym: "renal stroma" EXACT [FMA:70983]
xref: EMAPA:27690
xref: FMA:70983
xref: MA:0002616
is_a: UBERON:0003567 ! abdomen connective tissue
is_a: UBERON:0005169 ! interstitial tissue
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002113
intersection_of: UBERON:0005169 ! interstitial tissue
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0005216
name: optic eminence surface ectoderm
def: "An external ectoderm that is part of a optic eminence [Obol]." [OBOL:automatic]
xref: EMAPA:16539
xref: RETIRED_EHDAA2:0001311
xref: VHOG:0000520
is_a: UBERON:0000076 ! external ectoderm
relationship: part_of UBERON:0004348
intersection_of: UBERON:0000076 ! external ectoderm
intersection_of: part_of UBERON:0004348 ! optic eminence
relationship: part_of UBERON:0004348 ! optic eminence
[Term]
id: UBERON:0005217
name: midbrain subarachnoid space
def: "A subarachnoid space that is part of a midbrain [Obol]." [OBOL:automatic]
xref: EMAPA:19055
xref: VHOG:0001304
is_a: UBERON:0000315 ! subarachnoid space
relationship: part_of UBERON:0001891
intersection_of: UBERON:0000315 ! subarachnoid space
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0005218
name: diencephalon subarachnoid space
def: "A subarachnoid space that is part of a diencephalon [Obol]." [OBOL:automatic]
xref: EMAPA:19053
xref: EMAPA:25079
xref: VHOG:0001302
is_a: UBERON:0000315 ! subarachnoid space
relationship: part_of UBERON:0001894
intersection_of: UBERON:0000315 ! subarachnoid space
intersection_of: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0005219
name: hindbrain subarachnoid space
def: "A subarachnoid space that is part of a hindbrain [Obol]." [OBOL:automatic]
xref: EMAPA:18211
xref: VHOG:0001303
is_a: UBERON:0000315 ! subarachnoid space
relationship: part_of UBERON:0002028
intersection_of: UBERON:0000315 ! subarachnoid space
intersection_of: part_of UBERON:0002028 ! hindbrain
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0005220
name: pancreas head parenchyma
def: "A parenchyma that is part of a head of pancreas [Obol]." [OBOL:automatic]
xref: VHOG:0000838
is_a: UBERON:0000353 ! parenchyma
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001069
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001069 ! head of pancreas
relationship: part_of UBERON:0001069 ! head of pancreas
[Term]
id: UBERON:0005221
name: liver right lobe parenchyma
def: "A parenchyma that is part of a right lobe of liver [Obol]." [OBOL:automatic]
synonym: "parenchyma of right lobe of liver" EXACT [FMA:71657]
xref: EHDAA2:0001010
xref: EMAPA:18317
xref: FMA:71657
xref: VHOG:0000840
is_a: UBERON:0001280 ! liver parenchyma
relationship: part_of UBERON:0001114
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001114 ! right lobe of liver
relationship: part_of UBERON:0001114 ! right lobe of liver
[Term]
id: UBERON:0005222
name: liver left lobe parenchyma
def: "A parenchyma that is part of a left lobe of liver [Obol]." [OBOL:automatic]
synonym: "parenchyma of left lobe of liver" EXACT [FMA:71658]
xref: EHDAA2:0001002
xref: EMAPA:18310
xref: FMA:71658
xref: VHOG:0000839
is_a: UBERON:0001280 ! liver parenchyma
relationship: part_of UBERON:0001115
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001115 ! left lobe of liver
relationship: part_of UBERON:0001115 ! left lobe of liver
[Term]
id: UBERON:0005223
name: pancreas body parenchyma
def: "A parenchyma that is part of a body of pancreas [Obol]." [OBOL:automatic]
xref: EHDAA2:0001370
xref: VHOG:0000837
is_a: UBERON:0000353 ! parenchyma
relationship: part_of UBERON:0001150
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001150 ! body of pancreas
relationship: part_of UBERON:0001150 ! body of pancreas
[Term]
id: UBERON:0005224
name: pancreas tail parenchyma
def: "A parenchyma that is part of a tail of pancreas [Obol]." [OBOL:automatic]
xref: EHDAA2:0001392
xref: VHOG:0000469
is_a: UBERON:0000353 ! parenchyma
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001151
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001151 ! tail of pancreas
relationship: part_of UBERON:0001151 ! tail of pancreas
[Term]
id: UBERON:0005225
name: upper leg epithelium
def: "An epithelium that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
xref: EHDAA2:0002131
xref: EMAPA:17500
xref: VHOG:0001041
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0000376
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
relationship: develops_from UBERON:0003371 {source="EHDAA2"} ! pelvic appendage bud ectoderm
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0005226
name: foot digit epithelium
def: "An epithelium that is part of a toe [Obol]." [OBOL:automatic]
synonym: "toe epithelium" EXACT []
xref: VHOG:0001031
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001466
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: develops_from UBERON:0003248 {source="EHDAA2"} ! epithelium of footplate
relationship: part_of UBERON:0001466 ! foot digit
[Term]
id: UBERON:0005227
name: hand digit epithelium
def: "An epithelium that is part of a finger [Obol]." [OBOL:automatic]
synonym: "finger epithelium" EXACT []
xref: EHDAA2:0000406
xref: VHOG:0001032
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0002389
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: develops_from UBERON:0010332 {source="EHDAA2"} ! epithelium of handplate
relationship: part_of UBERON:0002389 ! hand digit
[Term]
id: UBERON:0005228
name: upper arm epithelium
def: "An epithelium that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
xref: EHDAA2:0002113
xref: EMAPA:17425
xref: VHOG:0000990
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0003822
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm
relationship: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0005229
name: lower leg epithelium
def: "An epithelium that is part of a lower leg [Obol]." [OBOL:automatic]
xref: EHDAA2:0001031
xref: EMAPA:17497
xref: VHOG:0001050
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0003823
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: develops_from UBERON:0003371 {source="EHDAA2"} ! pelvic appendage bud ectoderm
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0005230
name: fundus epithelium
comment: obsoleted due to confusion between ocular fundus and other types of fundus
is_obsolete: true
[Term]
id: UBERON:0005233
name: medial-nasal process ectoderm
def: "An ectoderm that is part of a medial nasal prominence [Obol]." [OBOL:automatic]
xref: EHDAA2:0001078
xref: EMAPA:16809
xref: VHOG:0000803
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0000924 ! ectoderm
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0004068
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0004068 ! medial nasal prominence
relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm
relationship: part_of UBERON:0004068 ! medial nasal prominence
[Term]
id: UBERON:0005234
name: optic eminence ectoderm
def: "An ectoderm that is part of a optic eminence [Obol]." [OBOL:automatic]
xref: EHDAA:940
xref: EMAPA:16323
xref: RETIRED_EHDAA2:0001309
xref: VHOG:0001105
is_a: UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0004348
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0004348 ! optic eminence
relationship: part_of UBERON:0004348 ! optic eminence
[Term]
id: UBERON:0005236
name: osseus labyrinth vestibule
def: "A small, oval, bony chamber of the labyrinth. The vestibule contains the utricle and saccule, organs which are part of the balancing apparatus of the ear." [BTO:0003382, Wikipedia:Vestibule_of_the_ear]
synonym: "bony labyrinth vestibule" EXACT []
synonym: "inner ear vestibule" RELATED [BTO:0003382]
synonym: "inner ear vestibulum" EXACT [BTO:0003382]
synonym: "osseous labyrinth vestibule" EXACT [Obol:automatic]
synonym: "vestibular apparatus" RELATED [GAID:881]
synonym: "vestibule" BROAD [XAO:0000199]
synonym: "vestibule of bony labyrinth" EXACT [FMA:60183]
synonym: "vestibulum labyrinthi, vestibulum auris" RELATED LATIN [Wikipedia:Vestibule_of_the_ear]
xref: AAO:0000984
xref: BTO:0003382
xref: EV:0100366
xref: FMA:60183
xref: GAID:881
xref: http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray919.png
xref: MA:0001185
xref: MESH:A.09.246.631.909
xref: ncithesaurus:Vestibule
xref: SCTID:181188003
xref: VHOG:0001220
xref: XAO:0000199
property_value: UBPROP:0000001 "A tube leading from the external naris to the nasal cavity.[AAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001839 ! bony labyrinth
[Term]
id: UBERON:0005238
name: tensor tympani muscle
def: "A muscle organ that is part of a tensor tympani [Obol]." [OBOL:automatic]
xref: EHDAA2:0002002
xref: EMAPA:18587
xref: MESH:A.02.633.567.975
xref: SCTID:244779001
xref: VHOG:0000698
is_a: UBERON:0004112 ! muscle of middle ear
relationship: part_of UBERON:0001600
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001600 ! tensor tympani
relationship: part_of UBERON:0001600 ! tensor tympani
[Term]
id: UBERON:0005239
name: basal plate metencephalon
synonym: "metencephalon basal plate" EXACT [EHDAA2:0001154]
xref: EHDAA2:0001154
xref: EMAPA:17078
xref: VHOG:0000320
is_a: UBERON:0004064 ! basal plate
[Term]
id: UBERON:0005240
name: basal plate medulla oblongata
synonym: "medulla oblongata basal plate" EXACT [EHDAA2:0001093]
xref: EHDAA2:0001093
xref: EMAPA:17557
xref: VHOG:0000324
is_a: UBERON:0004064 ! basal plate
[Term]
id: UBERON:0005241
name: apical ectodermal ridge forelimb
def: "A forelimb that is part of an apical ectodermal ridge [Obol]." [OBOL:automatic]
is_obsolete: true
[Term]
id: UBERON:0005242
name: apical ectodermal ridge hindlimb
def: "A hindlimb that is part of an apical ectodermal ridge [Obol]." [OBOL:automatic]
is_obsolete: true
[Term]
id: UBERON:0005243
name: interventricular septum endocardium
def: "An endocardium that is part of a interventricular septum [Obol]." [OBOL:automatic]
comment: todo - split?
synonym: "endocardium of interventricular septum" EXACT [FMA:83584]
xref: EHDAA2:0000886
xref: EHDAA2:0000887
xref: FMA:83584
xref: VHOG:0000615
is_a: UBERON:0002165 ! endocardium
relationship: part_of UBERON:0002094
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0002094 ! interventricular septum
relationship: part_of UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0005244
name: lobar bronchus of right lung cranial lobe
def: "A lobar bronchus that is part of a upper lobe of right lung [Obol]." [OBOL:automatic]
xref: EHDAA2:0001752
xref: VHOG:0000240
is_a: UBERON:0003404 ! lobar bronchus of right lung
relationship: part_of UBERON:0002170
intersection_of: UBERON:0002183 ! lobar bronchus
intersection_of: part_of UBERON:0002170 ! upper lobe of right lung
relationship: part_of UBERON:0002170 ! upper lobe of right lung
[Term]
id: UBERON:0005245
name: lobar bronchus of the right lung caudal lobe
def: "A lobar bronchus that is part of a lower lobe of right lung [Obol]." [OBOL:automatic]
xref: EHDAA2:0001744
xref: VHOG:0000250
is_a: UBERON:0003404 ! lobar bronchus of right lung
relationship: part_of UBERON:0002171
intersection_of: UBERON:0002183 ! lobar bronchus
intersection_of: part_of UBERON:0002171 ! lower lobe of right lung
relationship: part_of UBERON:0002171 ! lower lobe of right lung
[Term]
id: UBERON:0005248
name: bulbus cordis myocardium
def: "A myocardium that is part of a bulbus cordis [Obol]." [OBOL:automatic]
xref: VHOG:0000609
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002349 ! myocardium
relationship: part_of UBERON:0004706
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0004706 ! bulbus cordis
relationship: part_of UBERON:0004706 ! bulbus cordis
[Term]
id: UBERON:0005249
name: metanephric renal pelvis
synonym: "metanephros pelvis" EXACT [VHOG:0000945]
xref: VHOG:0000945
is_a: UBERON:0001224 ! renal pelvis
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001224 ! renal pelvis
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005250
name: stomatodeum gland
subset: organ_slim
xref: VHOG:0000658
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002530 ! gland
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000930
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000930 ! stomodeum
relationship: part_of UBERON:0000930 ! stomodeum
[Term]
id: UBERON:0005251
name: yolk sac cavity
def: "An anatomical cavity that is part of a yolk sac [Obol]." [OBOL:automatic]
synonym: "cavity of yolk sac" EXACT [FMA:63942]
xref: EMAPA:16055
xref: FMA:63942
xref: VHOG:0000843
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001040
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: part_of UBERON:0001040 ! yolk sac
relationship: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0005252
name: omental bursa cavity
def: "An anatomical cavity that is part of a lesser sac [Obol]." [OBOL:automatic]
comment: note EHDAA2
synonym: "cavity of lesser sac" EXACT [FMA:9702]
synonym: "cavity of omental bursa" EXACT [FMA:9702]
synonym: "cavity of omental bursa viewed anatomically" EXACT [FMA:9702]
synonym: "lesser peritoneal sac" EXACT [FMA:9702]
synonym: "lesser sac cavity" EXACT [FMA:9702]
xref: EHDAA2:0004558
xref: EMAPA:18458
xref: EMAPA:18461
xref: FMA:9702
xref: VHOG:0000827
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001341
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: part_of UBERON:0001341 ! lesser sac
relationship: develops_in UBERON:0005450 {source="EHDAA2"} ! greater sac cavity
relationship: part_of UBERON:0001341 ! lesser sac
[Term]
id: UBERON:0005253
name: head mesenchyme
def: "Portion of primordial embryonic connective tissue of the developing head, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to head connective tissue, bone and musculature in conjunction with cranial neural crest cells." [ISBN:0683400088, MP:0011260]
subset: vertebrate_core
synonym: "cephalic mesenchyme" EXACT [MP:0011260]
xref: EFO:0003492
xref: EHDAA2:0000732
xref: EHDAA:179
xref: EMAPA:16098
xref: EMAPA:16269
xref: TAO:0000113
xref: VHOG:0000332
xref: ZFA:0000113
property_value: UBPROP:0000001 "Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string
is_a: UBERON:0003104 {source="ZFA"} ! mesenchyme
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0005254
name: upper leg mesenchyme
def: "A mesenchyme that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
xref: EHDAA2:0002132
xref: EMAPA:17501
xref: VHOG:0000506
is_a: UBERON:0003860 ! hindlimb mesenchyme
relationship: part_of UBERON:0000376
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0005255
name: foot digit mesenchyme
def: "A mesenchyme that is part of a toe [Obol]." [OBOL:automatic]
synonym: "toe mesenchyme" EXACT []
xref: VHOG:0000463
is_a: UBERON:0003860 ! hindlimb mesenchyme
is_a: UBERON:0010377 ! mesenchyme from somatopleure
is_a: UBERON:0010702 ! digit mesenchyme
relationship: part_of UBERON:0001466
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: develops_from UBERON:0003328 {source="EHDAA2"} ! mesenchyme of footplate
relationship: part_of UBERON:0001466 ! foot digit
[Term]
id: UBERON:0005256
name: trunk mesenchyme
subset: vertebrate_core
xref: EFO:0003485
xref: EHDAA2:0002092
xref: EHDAA:377
xref: EMAPA:16177
xref: TAO:0000081
xref: VHOG:0000281
xref: ZFA:0000081
is_a: UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0002100
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0005257
name: hand digit mesenchyme
def: "A mesenchyme that is part of a finger [Obol]." [OBOL:automatic]
comment: Editor notes: In EHDAA2, the metacarpal cartilage condensation is considered part of the digits - it might be better to call the whole structure digital ray mesenchyme/condensation
synonym: "anterior limb digital ray mesenchyme" RELATED [UBERON:cjm]
synonym: "finger mesenchyme" EXACT []
synonym: "hand digital ray mesenchyme" RELATED [UBERON:cjm]
xref: EHDAA2:0000407
xref: VHOG:0001416
is_a: UBERON:0003859 ! forelimb mesenchyme
is_a: UBERON:0010377 ! mesenchyme from somatopleure
is_a: UBERON:0010702 ! digit mesenchyme
relationship: part_of UBERON:0002389
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: develops_from UBERON:0009523 ! mesenchyme of handplate
relationship: part_of UBERON:0002389 ! hand digit
[Term]
id: UBERON:0005258
name: upper arm mesenchyme
def: "A mesenchyme that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
xref: EHDAA2:0002114
xref: EMAPA:17426
xref: VHOG:0000505
is_a: UBERON:0003859 ! forelimb mesenchyme
relationship: part_of UBERON:0003822
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
relationship: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0005259
name: lower leg mesenchyme
def: "A mesenchyme that is part of a lower leg [Obol]." [OBOL:automatic]
xref: EHDAA2:0001032
xref: EMAPA:17498
xref: VHOG:0000752
is_a: UBERON:0003860 ! hindlimb mesenchyme
relationship: part_of UBERON:0003823
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0005261
name: atrium cardiac jelly
def: "A cardiac jelly that is part of an atrium [Obol]." [OBOL:automatic]
xref: EMAPA:16690
xref: EMAPA:16814
xref: EMAPA:16821
xref: VHOG:0000941
is_a: UBERON:0003906 ! cardiac jelly
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002081
intersection_of: UBERON:0003906 ! cardiac jelly
intersection_of: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0005262
name: ventricle cardiac jelly
def: "A cardiac jelly that is part of a ventricle [Obol]." [OBOL:automatic]
xref: VHOG:0000943
is_a: UBERON:0003906 ! cardiac jelly
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002082
intersection_of: UBERON:0003906 ! cardiac jelly
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0005263
name: outflow tract cardiac jelly
def: "A cardiac jelly that is part of a outflow tract [Obol]." [OBOL:automatic]
xref: EHDAA2:0001354
xref: EMAPA:16230
xref: EMAPA:16347
xref: VHOG:0000940
is_a: UBERON:0003906 ! cardiac jelly
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0004145
intersection_of: UBERON:0003906 ! cardiac jelly
intersection_of: part_of UBERON:0004145 ! outflow tract
relationship: part_of UBERON:0004145 ! outflow tract
[Term]
id: UBERON:0005264
name: midbrain neural fold
is_obsolete: true
[Term]
id: UBERON:0005265
name: hindbrain neural fold
is_obsolete: true
[Term]
id: UBERON:0005266
name: spinal cord neural fold
is_obsolete: true
[Term]
id: UBERON:0005267
name: renal cortex collecting duct
def: "A collecting duct of renal tubule that is part of a cortex of kidney [Obol]." [OBOL:automatic]
xref: MA:0002600
is_a: UBERON:0001232 ! collecting duct of renal tubule
relationship: part_of UBERON:0001225
intersection_of: UBERON:0001232 ! collecting duct of renal tubule
intersection_of: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0005268
name: renal cortex artery
def: "An artery that is part of a cortex of kidney [Obol]." [OBOL:automatic]
synonym: "kidney cortex artery" EXACT [MP:0011314]
synonym: "renal cortex arterial system" RELATED [MA:0002582]
synonym: "renal cortex artery" EXACT [MA:0002582]
xref: EMAPA:28035
xref: MA:0002582
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003644 ! kidney arterial blood vessel
relationship: part_of UBERON:0001225
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0005269
name: renal cortex vein
def: "A vein that is part of a cortex of kidney [Obol]." [OBOL:automatic]
synonym: "kidney cortex vein" RELATED [MP:0011322]
synonym: "renal cortex venous system" RELATED [MA:0002592]
xref: EMAPA:28152
xref: MA:0002592
is_a: UBERON:0001140 ! renal vein
relationship: part_of UBERON:0001225
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0005270
name: renal cortex interstitium
def: "A portion of interstitial tissue that is part of a cortex of kidney [Obol]." [OBOL:automatic]
synonym: "cortical stroma" RELATED [EMAPA:28136]
synonym: "kidney cortex interstitium" EXACT [MA:0002608]
xref: EMAPA:28136
xref: MA:0002608
is_a: UBERON:0005215 ! kidney interstitium
relationship: part_of UBERON:0001225
intersection_of: UBERON:0005169 ! interstitial tissue
intersection_of: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001225 {source="MA"} ! cortex of kidney
relationship: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0005215 {source="MA"} ! kidney interstitium
[Term]
id: UBERON:0005271
name: juxtamedullary cortex
def: "the part of the renal cortex nearest to the medulla." [http://medical-dictionary.thefreedictionary.com/juxtamedullary+cortex]
synonym: "inner cortex of kidney" EXACT [FMA:74288]
synonym: "inner renal cortex" EXACT [KUPO:0001008]
synonym: "juxtamedullary cortex of kidney" EXACT [FMA:74288]
xref: FMA:74288
xref: KUPO:0001008
xref: MA:0001648
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001225 {source="FMA", source="KUPO"} ! cortex of kidney
[Term]
id: UBERON:0005272
name: peritubular capillary
def: "In the renal system, peritubular capillaries are tiny blood vessels that travel alongside nephrons allowing reabsorption and secretion between blood and the inner lumen of the nephron. Ions and minerals that need to be saved in the body are reabsorbed into the peritubular capillaries through active transport, secondary active transport, or transcytosis. The ions that need to be excreted as waste are secreted from the capillaries into the nephron to be sent towards the bladder and out of the body. The majority of exchange through the peritubular capillaries occurs because of chemical gradients, osmosis and Na+ pumps[WP]." [Wikipedia:Peritubular_capillaries]
xref: MA:0002588
is_a: UBERON:0003527 ! kidney capillary
[Term]
id: UBERON:0005273
name: nail bed
def: "Region of skin beneath the nail plate[WP]." [UBERON:gvg]
xref: EV:0100158
xref: MA:0002706
xref: SCTID:181578005
xref: VHOG:0001362
is_a: UBERON:0005275 ! dorsal skin of digit
relationship: adjacent_to UBERON:0008198 ! nail plate
relationship: part_of UBERON:0001705 {source="MA"} ! nail
[Term]
id: UBERON:0005274
name: proximal nail bed
xref: MA:0002709
is_a: UBERON:0005275 ! dorsal skin of digit
relationship: part_of UBERON:0001705 {source="MA"} ! nail
[Term]
id: UBERON:0005275
name: dorsal skin of digit
synonym: "dorsal digit skin" EXACT []
synonym: "skin of dorsal part of digit" EXACT []
is_a: UBERON:0001419 ! skin of limb
relationship: part_of UBERON:0002544 ! digit
[Term]
id: UBERON:0005276
name: dorsal skin of finger
comment: this class is explicitly the union of the two FMA classes
synonym: "dorsal finger skin" EXACT []
synonym: "skin of dorsal part of finger" EXACT [FMA:38320]
synonym: "subdivision of skin of dorsal part of finger" EXACT [FMA:60346]
xref: FMA:38320
xref: FMA:60346
is_a: UBERON:0003533 ! hand digit skin
is_a: UBERON:0005275 ! dorsal skin of digit
relationship: part_of UBERON:0002389
intersection_of: UBERON:0005275 ! dorsal skin of digit
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit
[Term]
id: UBERON:0005277
name: dorsal skin of toe
comment: this class is explicitly the union of the two FMA classes
synonym: "dorsal toe skin" EXACT []
synonym: "skin of dorsal part of toe" EXACT [FMA:37868]
synonym: "subdivision of skin of dorsal part of toe" EXACT [FMA:60523]
xref: FMA:37868
xref: FMA:60523
is_a: UBERON:0003530 ! foot digit skin
is_a: UBERON:0005275 ! dorsal skin of digit
relationship: part_of UBERON:0001466
intersection_of: UBERON:0005275 ! dorsal skin of digit
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit
[Term]
id: UBERON:0005278
name: nail bed of finger
xref: FMA:60348
xref: SCTID:244199003
is_a: UBERON:0005273 ! nail bed
is_a: UBERON:0005276 ! dorsal skin of finger
relationship: part_of UBERON:0002102
intersection_of: UBERON:0005273 ! nail bed
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002389 ! hand digit
[Term]
id: UBERON:0005279
name: nail bed of toe
xref: FMA:60529
xref: SCTID:244200000
is_a: UBERON:0005273 ! nail bed
is_a: UBERON:0005277 ! dorsal skin of toe
relationship: part_of UBERON:0002103
intersection_of: UBERON:0005273 ! nail bed
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0005280
name: head mesoderm
synonym: "cranial mesoderm" EXACT []
is_obsolete: true
replaced_by: UBERON:0006904
[Term]
id: UBERON:0005281
name: ventricular system of central nervous system
def: "a set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord." [Wikipedia:Ventricular_system]
subset: vertebrate_core
synonym: "ventricular system" EXACT [ZFA:0001261]
synonym: "ventricular system of neuraxis" EXACT [FMA:242675]
xref: EFO:0003650
xref: EHDAA2:0004362
xref: EV:0100306
xref: FMA:242675
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png
xref: TAO:0001261
xref: ZFA:0001261
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0005282
name: ventricular system of brain
synonym: "brain ventricular system" EXACT [VHOG:0000005]
xref: EV:0100306
xref: FMA:242787
xref: VHOG:0000005
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0005281 ! ventricular system of central nervous system
[Term]
id: UBERON:0005283
name: tela choroidea
def: "Portion of tissue that is part of the primitive meninx which forms a fold, roofing a ventricle of the brain and supporting the choroid plexus[ZFA]." [ISBN:0030223695, ISBN:0683014617, Wikipedia:Tela_chorioidea, ZFA:0000447]
comment: Editors note: TODO check relationship to choroid plexus - MP implies it is part of, as does WP. ZF def implies adjacency
subset: vertebrate_core
synonym: "choroid invagination" EXACT [EHDAA2:0000250]
synonym: "tela chorioidea" RELATED [FMA:242849]
xref: EHDAA2:0000250
xref: EHDAA:7567
xref: EMAPA:17548
xref: FMA:242849
xref: TAO:0000447
xref: ZFA:0000447
is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system
relationship: overlaps UBERON:0001886 ! choroid plexus
relationship: overlaps UBERON:0002360 ! meninx
[Term]
id: UBERON:0005284
name: brain vasculature
def: "A vasculature that is part of a brain [Obol]." [OBOL:automatic]
subset: vertebrate_core
synonym: "vasculature of brain" EXACT [FMA:242007]
xref: EFO:0003491
xref: FMA:242007
xref: TAO:0000099
xref: ZFA:0000099
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0006876 ! vasculature of organ
relationship: part_of UBERON:0000955
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0005286
name: tela choroidea of tectal ventricle
def: "Tela choroidea that lines the tectal ventricle." [ZFIN:curator]
synonym: "tela chorioidea tectal ventricle" EXACT [ZFA:0005157]
synonym: "tela choroidea of cerebral aqueduct" EXACT [OBOL:automatic]
synonym: "tela choroidea tectal ventricle" EXACT [ZFA:0005157]
xref: TAO:0005157
xref: ZFA:0005157
property_value: UBPROP:0000001 "Tela chorioidea that lines the tectal ventricle.[TAO]" xsd:string
is_a: UBERON:0005283 ! tela choroidea
relationship: part_of UBERON:0002289
intersection_of: UBERON:0005283 ! tela choroidea
intersection_of: part_of UBERON:0002289 ! cerebral aqueduct
relationship: part_of UBERON:0002289 ! cerebral aqueduct
[Term]
id: UBERON:0005287
name: tela choroidea of fourth ventricle
def: "Tela chorioidea that lines the fourth ventricle[ZFA]. The tela chorioidea of the fourth ventricle is the name applied to the triangular fold of pia mater which is carried upward between the cerebellum and the medulla oblongata. It consists of two layers, which are continuous with each other in front, and are more or less adherent throughout: The posterior layer covers the antero-inferior surface of the cerebellum. The anterior layer is applied to the structures which form the lower part of the roof of the ventricle, and is continuous inferiorly with the pia mater on the inferior peduncles and closed part of the medulla[WP]." [Wikipedia:Tela_chorioidea_of_fourth_ventricle, ZFIN:curator]
subset: vertebrate_core
synonym: "choroid membrane" EXACT [FMA:78493]
synonym: "choroid membrane of fourth ventricle" EXACT [FMA:78493]
synonym: "tela chorioidea fourth ventricle" EXACT []
synonym: "tela choroidea" BROAD [FMA:78493, FMA:TA]
synonym: "tela choroidea fourth ventricle" EXACT []
synonym: "tela choroidea of fourth ventricle" EXACT []
synonym: "tela choroidea ventriculi quarti" EXACT [FMA:78493, FMA:TA]
synonym: "tela choroidea ventriculi quarti" RELATED LATIN [Wikipedia:Tela_chorioidea_of_fourth_ventricle]
xref: FMA:78493
xref: SCTID:362321009
xref: TAO:0005158
xref: ZFA:0005158
xref: ZFIN:ZDB-ANAT-090922-200
property_value: UBPROP:0000001 "Tela chorioidea that lines the fourth ventricle.[TAO]" xsd:string
is_a: UBERON:0005283 ! tela choroidea
relationship: part_of UBERON:0002422
intersection_of: UBERON:0005283 ! tela choroidea
intersection_of: part_of UBERON:0002422 ! fourth ventricle
relationship: part_of UBERON:0002422 ! fourth ventricle
[Term]
id: UBERON:0005288
name: tela choroidea of third ventricle
def: "Tela chorioidea that lines the third ventricle[ZFA]. The part of the choroid plexus in relation to the body of the ventricle forms the vascular fringed margin of a triangular process of pia mater, named the tela chorioidea of the third ventricle, and projects from under cover of the lateral edge of the fornix. Blood is supplied by branches from the superior cerebellar artery[WP]." [Wikipedia:Tela_chorioidea_of_third_ventricle, ZFIN:curator]
subset: vertebrate_core
synonym: "choroid membrane of third ventricle" EXACT [FMA:78463]
synonym: "tela chorioidea of third ventricle" EXACT []
synonym: "tela chorioidea third ventricle" EXACT [ZFA:0005159]
synonym: "tela choroidea third ventricle" EXACT []
synonym: "tela choroidea ventriculi tertii" EXACT [FMA:78463, FMA:TA]
synonym: "tela choroidea ventriculi tertii" RELATED LATIN [Wikipedia:Tela_chorioidea_of_third_ventricle]
xref: FMA:78463
xref: http://upload.wikimedia.org/wikipedia/commons/6/60/Gray723.png
xref: SCTID:362320005
xref: TAO:0005159
xref: ZFA:0005159
property_value: UBPROP:0000001 "Tela chorioidea that lines the third ventricle.[TAO]" xsd:string
is_a: UBERON:0005283 ! tela choroidea
relationship: part_of UBERON:0002286
intersection_of: UBERON:0005283 ! tela choroidea
intersection_of: part_of UBERON:0002286 ! third ventricle
relationship: part_of UBERON:0002286 ! third ventricle
[Term]
id: UBERON:0005289
name: tela choroidea of telencephalic ventricle
def: "Tela chorioidea that lines the telencephalic ventricle." [ZFIN:curator]
subset: vertebrate_core
synonym: "tela chorioidea of lateral ventricle" EXACT []
synonym: "tela chorioidea of telencephalic ventricle" EXACT []
synonym: "tela chorioidea telencephalic ventricle" EXACT [ZFA:0005160]
synonym: "tela choroidea of lateral ventricle" EXACT []
synonym: "tela choroidea telencephalic ventricle" EXACT []
xref: FMA:83712
xref: SCTID:362319004
xref: TAO:0005160
xref: ZFA:0005160
xref: ZFIN:ZDB-ANAT-090922-202
is_a: UBERON:0005283 ! tela choroidea
relationship: part_of UBERON:0002285
intersection_of: UBERON:0005283 ! tela choroidea
intersection_of: part_of UBERON:0002285 ! lateral ventricle
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0005290
name: myelencephalon
def: "The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]." [BTO:0000758, Wikipedia:Myelencephalon]
comment: the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes
subset: uberon_slim
xref: BTO:0000758
xref: EHDAA2:0001207
xref: EHDAA:5526
xref: EMAPA:17082
xref: http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png
xref: MA:0000205
xref: VHOG:0000456
property_value: "dubious_for_taxon" NCBITaxon:7955
is_a: UBERON:0004733 ! segmental subdivision of hindbrain
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0010096 {evidence="definitional"} ! future myelencephalon
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0005291
name: embryonic tissue
def: "A portion of tissue that is part of an embryo." [OBOL:automatic]
synonym: "developing tissue" RELATED []
synonym: "portion of embryonic tissue" EXACT [OBOL:automatic]
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000922
intersection_of: UBERON:0000479 ! tissue
intersection_of: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0005292
name: extraembryonic tissue
def: "Portion of tissue that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [UBERON:cjm]
synonym: "extra-embryonic tissue" EXACT []
xref: BTO:0003360
xref: EFO:0001406
xref: MAT:0000061
xref: MIAA:0000061
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0000479 ! tissue
relationship: adjacent_to UBERON:0002050
relationship: existence_starts_and_ends_during UBERON:0000068
intersection_of: UBERON:0000479 ! tissue
intersection_of: adjacent_to UBERON:0002050 ! embryonic structure
intersection_of: existence_starts_and_ends_during UBERON:0000068 ! embryo stage
relationship: adjacent_to UBERON:0002050 ! embryonic structure
relationship: existence_starts_and_ends_during UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0005293
name: cerebellum lobe
synonym: "cerebellar lobe" EXACT [FMA:242392]
synonym: "lobe of cerebellum" EXACT [FMA:242392]
synonym: "lobe parts of the cerebellar cortex" EXACT [NIF_GrossAnatomy:birnlex_1076]
xref: FMA:242392
xref: MA:0002963
xref: NIF_GrossAnatomy:birnlex_1076
xref: SCTID:263971006
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0005294
name: genital ridge
def: "The precursor to the gonads." [Wikipedia:Gonadal_ridge]
comment: TODO - check developmental relationships. merge with urogenital ridge?
synonym: "crista gonadalis" RELATED LATIN [Wikipedia:Gonadal_ridge]
synonym: "gonadal ridge" EXACT [Wikipedia:Gonadal_ridge]
xref: AAO:0011047
xref: EHDAA2:0004044
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1106.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1106.png/200px-Gray1106.png
xref: ncithesaurus:Gonadal_Ridge
xref: SCTID:361399001
xref: XAO:0000018
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0004876 ! urogenital ridge
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004122 ! genitourinary system
[Term]
id: UBERON:0005295
name: sex cord
def: "Cordlike masses of epithelial tissue that invaginate from germinal epithelium of the gonad and give rise to seminiferous tubules and rete testes in the male, and primary ovarian follicles and rete ovarii in the female." [http://www.answers.com/topic/sex-cord, Wikipedia:Sex_cords]
synonym: "gonad cord" RELATED []
synonym: "gonadal cord" RELATED []
synonym: "primitive sex cord" RELATED []
xref: EHDAA2:0004051
xref: ncithesaurus:Gonadal_Cord
xref: RETIRED_EHDAA2:0001523
xref: SCTID:343823004
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005154 {source="EHDAA2"} ! epithelial cord
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0005294 ! genital ridge
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0005296
name: ovary sex cord
def: "structures that develop from sex cords in the female. After further development they become the ovarian follicles." [Wikipedia:Cortical_cords]
comment: TODO check secondary vs cortical vs ovary
synonym: "cortical cord" RELATED []
synonym: "cortical sex cord" RELATED []
synonym: "ovary primitive sex cord" RELATED []
synonym: "ovigerous cord" EXACT []
synonym: "ovigerous cords" EXACT PLURAL [VHOG:0001339]
synonym: "secondary cord" RELATED []
xref: EHDAA2:0001363
xref: EHDAA:8130
xref: ncithesaurus:Cortical_Cord
xref: VHOG:0001339
is_a: UBERON:0004911 ! epithelium of female gonad
is_a: UBERON:0005295 ! sex cord
relationship: part_of UBERON:0000992
intersection_of: UBERON:0005295 ! sex cord
intersection_of: part_of UBERON:0000992 ! female gonad
relationship: develops_from UBERON:0010141 ! primitive sex cord of indifferent gonad
relationship: part_of UBERON:0000992 ! female gonad
[Term]
id: UBERON:0005297
name: testis sex cord
def: "The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]." [Wikipedia:Testis_cords]
comment: check primary vs testis
synonym: "primary sex cord" RELATED []
synonym: "testis cord" EXACT [MP:0006424]
synonym: "testis primary sex cords" EXACT [EHDAA2:0002011]
synonym: "testis primitive sex cord" RELATED []
xref: EHDAA2:0002011
xref: EHDAA:8152
xref: EMAPA:29098
xref: VHOG:0001321
is_a: UBERON:0004910 ! epithelium of male gonad
is_a: UBERON:0005295 ! sex cord
relationship: part_of UBERON:0000473
intersection_of: UBERON:0005295 ! sex cord
intersection_of: part_of UBERON:0000473 ! testis
relationship: develops_from UBERON:0010141 ! primitive sex cord of indifferent gonad
relationship: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0005298
name: skin of clitoris
def: "A zone of skin that is part of a clitoris [Obol]." [OBOL:automatic]
synonym: "clitoris skin" EXACT []
xref: FMA:20168
xref: SCTID:361374002
is_a: UBERON:0000014 ! zone of skin
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0002411
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002411 ! clitoris
relationship: part_of UBERON:0002411 ! clitoris
[Term]
id: UBERON:0005299
name: prepuce of clitoris
def: "In female human anatomy, the clitoral hood, is a fold of skin that surrounds and protects the clitoral glans. It develops as part of the labia minora and is homologous with the foreskin (equally called prepuce) in male genitals." [Wikipedia:Clitoral_hood]
comment: Note FMA has FMA:27886 skin of prepuce of clitoris- how is this different?
synonym: "clitoral hood" EXACT [Wikipedia:Clitoral_hood]
synonym: "clitoral prepuce" EXACT []
synonym: "clitoris prepuce" EXACT []
synonym: "prepuce of female" EXACT [EMAPA:30699]
synonym: "prepuce of the clitoris" EXACT []
synonym: "preputium clitoridis" EXACT [Wikipedia:Clitoral_hood]
xref: EMAPA:30699
xref: FMA:20169
xref: http://upload.wikimedia.org/wikipedia/commons/b/bd/Clitoris_outer_anatomy.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Clitoris_outer_anatomy.gif/200px-Clitoris_outer_anatomy.gif
xref: ncithesaurus:Female_Prepuce
xref: SCTID:362242009
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0011374 ! prepuce
relationship: part_of UBERON:0005298 ! skin of clitoris
[Term]
id: UBERON:0005300
name: reproductive gland
is_obsolete: true
replaced_by: UBERON:0003937
[Term]
id: UBERON:0005301
name: male preputial gland
def: "One of the sebaceous glands of the corona and neck of the glans penis." [MP:0002717]
synonym: "gland of Tyson" RELATED [BTO:0001111]
synonym: "preputial gland" BROAD [BTO:0001111, EMAPA:30640]
synonym: "preputial gland of male" EXACT []
synonym: "preputial gland of penis" EXACT [FMA:19653]
xref: BTO:0001111
xref: EMAPA:30502
xref: EMAPA:30640
xref: EMAPA:30659
xref: FMA:19653
xref: MA:0000403
xref: ncithesaurus:Preputial_Gland
is_a: UBERON:0000359 ! preputial gland
is_a: UBERON:0010147 ! male accessory sex gland
relationship: part_of UBERON:0003101
intersection_of: UBERON:0000359 ! preputial gland
intersection_of: part_of UBERON:0003101 ! male organism
relationship: part_of UBERON:0001332 ! prepuce of penis
relationship: part_of UBERON:0003101 ! male organism
[Term]
id: UBERON:0005302
name: female preputial gland
def: "A preputial gland that is part of a female organism [Obol]." [OBOL:automatic]
comment: TODO: check MA terms
synonym: "clitoral gland" EXACT [MA:0001702]
synonym: "preputial gland of female" EXACT [EMAPA:30499]
xref: BTO:0003119
xref: EMAPA:30499
xref: EMAPA:30711
xref: MA:0001702
xref: MA:0001703
xref: ncithesaurus:Clitoral_Gland
is_a: UBERON:0000359 ! preputial gland
is_a: UBERON:0005398 ! female reproductive gland
relationship: part_of UBERON:0003100
intersection_of: UBERON:0000359 ! preputial gland
intersection_of: part_of UBERON:0003100 ! female organism
relationship: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0003100 ! female organism
[Term]
id: UBERON:0005303
name: hypogastric nerve
def: "the transition between the superior hypogastric plexus and the inferior hypogastric plexus." [Wikipedia:Hypogastric_nerve]
comment: check plexus vs nerve. WP indicates it is a 'transition'
synonym: "hypogastric nerve plexus" EXACT [MA:0001140]
synonym: "hypogastric plexus" EXACT [EMAPA:18225]
synonym: "nervus hypogastricus" RELATED LATIN [Wikipedia:Hypogastric_nerve]
xref: EMAPA:18225
xref: FMA:77596
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray847.png/200px-Gray847.png
xref: MA:0001140
xref: MESH:A.08.800.050.050.400
xref: ncithesaurus:Hypogastric_Nerve_Plexus
xref: SCTID:181061006
is_a: UBERON:0001816 ! autonomic nerve plexus
[Term]
id: UBERON:0005304
name: submucous nerve plexus
def: "The nerves of the small intestines are derived from the plexuses of parasympathetic nerves around the superior mesenteric artery. From this source they run to the myenteric plexus of nerves and ganglia situated between the circular muscular fibers and the mucosal cells. From this a secondary plexus, the plexus of the submucosa (Meissner's plexus, Submucous plexus, submucosal plexus) is derived, and it is formed by branches that have perforated the circular muscular fibers. This plexus lies in the submucous coat of the intestine; it also contains ganglia from which nerve fibers pass to the muscularis mucosae and to the mucous membrane. The nerve bundles of the submucous plexus are finer than those of the myenteric plexus. Its function is to innervate cells in the epithelial layer and the smooth muscle of the[WP]." [Wikipedia:Meissner's_plexus]
comment: AO notes: in FMA this is part of the esophagus and intestine; this violates part-disjointness axioms in uberon
synonym: "Henle's plexus" RELATED []
synonym: "Meissner's plexus" RELATED [HP:0002251, MA:0001149]
synonym: "meissner's plexus" RELATED []
synonym: "submucosal nerve plexus" EXACT [FMA:21542, Wikipedia:Meissner's_plexus]
xref: FMA:21542
xref: GAID:801
xref: MA:0001149
xref: MESH:A.08.800.050.050.850
xref: ncithesaurus:Submucous_Nerve_Plexus
xref: SCTID:322349001
is_a: UBERON:0001816 ! autonomic nerve plexus
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: overlaps UBERON:0001205 {source="FMA-modified"} ! submucosa of small intestine
relationship: overlaps UBERON:0001974 {source="FMA-modified"} ! lamina propria of esophagus
relationship: part_of UBERON:0000429 ! enteric plexus
[Term]
id: UBERON:0005305
name: thyroid follicle
def: "Discrete, cystlike units of the thyroid gland that are lined with cuboidal epithelium and are filled with a colloid substance, about 30 to each lobule[BTO]." [BTO:0004708]
subset: uberon_slim
subset: vertebrate_core
synonym: "thyroid gland follicle" EXACT []
xref: BTO:0004708
xref: FMA:68805
xref: MA:0000726
xref: ncithesaurus:Thyroid_Gland_Follicle
xref: SCTID:176685006
xref: TAO:0001072
xref: ZFA:0001072
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0005306
name: blastema
def: "A blastema is a mass of cells capable of growth and regeneration into organs or body parts. Historically blastema have been thought to be composed of undifferentiated pluripotent cells, but recent research indicates that in some organisms blastema may retain memory of tissue origin.[1] Blastemata are typically found in the early stages of an organism's development such as in embryos, and in the regeneration of tissues, organs and bone[WP]. A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise[ZFA]." [Wikipedia:Blastema, ZFA:0001270, ZFIN:ZDB-PUB-061108-12]
synonym: "regeneration blastema" EXACT [ZFIN:ZDB-PUB-061108-12]
xref: BTO:0001638
xref: EFO:0003658
xref: TAO:0001270
xref: XAO:0004060
xref: ZFA:0001270
is_a: UBERON:0000479 ! tissue
[Term]
id: UBERON:0005307
name: chorion-containing eggshell
def: "An eggshell that contains chorion. An example of this is found in Drosophila melanogaster." [GO:0007304]
is_a: UBERON:0005079 ! eggshell
relationship: has_part UBERON:0000920 ! egg chorion
[Term]
id: UBERON:0005308
name: nephrostome
def: "The nephrostome is the opening of the pronephros into the body cavity[GO]." [GO:0039018]
xref: AAO:0011069
xref: XAO:0000062
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0005309
name: pronephric nephron
def: "A pronephric nephron is the functional unit of the pronephros[GO]." [GO:0039019]
xref: AAO:0011091
xref: XAO:0000285
property_value: UBPROP:0000001 "The structure that is the basic functional unit of the pronephros.[AAO]" xsd:string
is_a: UBERON:0001285 ! nephron
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002120
intersection_of: UBERON:0001285 ! nephron
intersection_of: part_of UBERON:0002120 ! pronephros
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0005310
name: pronephric nephron tubule
def: "The pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron and connects the filtration unit (glomerulus or glomus) of the pronephros to the pronephric duct[GO]." [GO:0039020]
synonym: "pronephric tubule" EXACT [ZFA:0001558]
xref: TAO:0001558
xref: XAO:0004105
xref: ZFA:0001558
property_value: "dubious_for_taxon" NCBITaxon:32524
property_value: UBPROP:0000001 "Bilaterally paired tubes connecting the pronephric glomeruli to the pronephric ducts. In zebrafish and other teleosts, the pronephric nephron and tubules form after the pronephric duct, connecting to the anterior-most tip of the pronephric ducts. Drummond, 2000.[TAO]" xsd:string
is_a: UBERON:0001231 ! nephron tubule
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0005309
intersection_of: UBERON:0001231 ! nephron tubule
intersection_of: part_of UBERON:0005309 ! pronephric nephron
relationship: part_of UBERON:0005309 ! pronephric nephron
relationship: part_of UBERON:0005309 {source="GO"} ! pronephric nephron
[Term]
id: UBERON:0005311
name: mammary placode
def: "The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
comment: TODO develops_from
is_a: UBERON:0005085 {source="GO"} ! ectodermal placode
relationship: develops_from UBERON:0008425 {source="Stedmans"} ! mammary ridge
[Term]
id: UBERON:0005312
name: primary ureteric bud
def: "." [GO:0060682]
is_a: UBERON:0000084 ! ureteric bud
[Term]
id: UBERON:0005313
name: mammary duct terminal end bud
def: "." [GO:0060763]
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001765 ! mammary duct
[Term]
id: UBERON:0005314
name: alveolar primary septum
def: "A primary alveolar septum is a specialized epithelium that surrounds the saccule as it forms[GO]." [GO:0061143]
comment: TODO - check UBERON:0004893 interalveolar septum
is_a: UBERON:0000115 ! lung epithelium
relationship: surrounds UBERON:0000116 ! lung saccule
[Term]
id: UBERON:0005315
name: alveolar secondary septum
def: "A secondary alveolar septum is a specialized epithelium that subdivides the initial saccule[GO]." [GO:0061144]
comment: TODO - check UBERON:0004893 interalveolar septum
is_a: UBERON:0004821 ! pulmonary alveolus epithelium
relationship: part_of UBERON:0000116 ! lung saccule
[Term]
id: UBERON:0005316
name: endocardial endothelium
def: "The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]." [GO:0061147]
synonym: "endocardium endothelium" EXACT [FMA:83596]
xref: FMA:83596
is_a: UBERON:0004638 ! blood vessel endothelium
is_a: UBERON:0008307 ! heart endothelium
relationship: part_of UBERON:0002165
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0002165 ! endocardium
relationship: part_of UBERON:0002165 ! endocardium
relationship: part_of UBERON:0002165 {source="FMA"} ! endocardium
[Term]
id: UBERON:0005317
name: pulmonary artery endothelium
def: "An pulmonary artery endothelium is an epithelium that lines the pulmonary artery[GO]." [GO:0061155]
synonym: "pulmonary artery endothelial tube" EXACT [GO:0061155]
xref: BTO:0000137
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001917 ! endothelium of artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0002012
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0002012 ! pulmonary artery
relationship: part_of UBERON:0002012 ! pulmonary artery
[Term]
id: UBERON:0005319
name: mesonephric collecting duct
def: "The collecting duct is the final common path through which urine flows before entering the ureter and then emptying into the bladder[GO]." [GO:0061211]
xref: AAO:0010390
xref: XAO:0000151
is_a: UBERON:0001232 ! collecting duct of renal tubule
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000080
intersection_of: UBERON:0001232 ! collecting duct of renal tubule
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005320
name: mesonephric juxtaglomerular apparatus
def: "The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]." [GO:0061212]
is_a: UBERON:0002303 ! juxtaglomerular apparatus
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000080
intersection_of: UBERON:0002303 ! juxtaglomerular apparatus
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005321
name: mesonephric smooth muscle tissue
def: "." [GO:0061214]
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002113
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0005322
name: mesonephric nephron
def: "A nephron is the functional unit of the kidney[GO]." [GO:0061215]
comment: TODO
synonym: "stage IV nephron" RELATED [ZFA:0005592]
xref: AAO:0010387
xref: XAO:0000292
xref: ZFA:0005592
property_value: UBPROP:0000001 "The structure that is the basic functional unit of the kidney.[AAO]" xsd:string
is_a: UBERON:0001285 ! nephron
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000080
intersection_of: UBERON:0001285 ! nephron
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: develops_from UBERON:0005323 {source="XAO"} ! mesonephric mesenchyme
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005323
name: mesonephric mesenchyme
def: "Mesonephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the mesonephros[GO]." [GO:0061219]
xref: AAO:0011062
xref: EHDAA2:0001132
xref: EMAPA:27585
xref: EMAPA:27661
xref: XAO:0000291
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000080
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005324
name: mesonephric macula densa
def: "The mesonephric macula densa is an area of specialized cells in the distal tubule of the mesonephros that makes contact with the vascular pole of the glomerulus[GO]." [GO:0061220]
is_a: UBERON:0002335 ! macula densa
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000080
intersection_of: UBERON:0002335 ! macula densa
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005325
name: mesonephric glomerulus
def: "The mesonephric glomerulus is a capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the mature vertebrate kidney, or mesonephros[GO]." [GO:0061224]
synonym: "glomerulus" BROAD SENSU [AAO:0010388]
xref: AAO:0010388
xref: EMAPA:30568
xref: EMAPA:30580
xref: SCTID:362217000
xref: VHOG:0001238
property_value: UBPROP:0000001 "A tuft of capillaries found in a Bowman's capsule in which waste products are filtered from the blood and urine formation is initiated.[AAO]" xsd:string
is_a: UBERON:0000074 ! renal glomerulus
relationship: part_of UBERON:0000080
intersection_of: UBERON:0000074 ! renal glomerulus
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005326
name: mesonephric glomerulus vasculature
def: "The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus[GO]." [GO:0061231]
is_a: UBERON:0004190 ! glomerulus vasculature
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004190 ! glomerulus vasculature
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005327
name: mesonephric glomerular epithelium
def: "A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros[GO]." [GO:0061232]
is_a: UBERON:0004188 ! glomerular epithelium
is_a: UBERON:0005330 ! mesonephric nephron epithelium
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004188 ! glomerular epithelium
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005328
name: mesonephric comma-shaped body
def: "The mesonephric comma-shaped body is the precursor structure to the mesonephric S-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]." [GO:0061236]
is_a: UBERON:0004198 ! comma-shaped body
is_a: UBERON:0005330 ! mesonephric nephron epithelium
is_a: UBERON:0010534 ! primitive mesonephric nephron
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004198 ! comma-shaped body
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005329
name: mesonephric nephron tubule
def: "A mesonephric nephron tubule is an epithelial tube that is part of the mesonephric nephron, the functional part of the mesonephros[GO]." [GO:0061240]
synonym: "mesonephric renal tubule" EXACT [UBERON:cjm]
is_a: UBERON:0000083 ! mesonephric tubule
is_a: UBERON:0001231 ! nephron tubule
is_a: UBERON:0005330 ! mesonephric nephron epithelium
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005330
name: mesonephric nephron epithelium
def: "The mesonephric nephron epithelium is a tissue that covers the surface of a nephron in the mesonephros[GO]." [GO:0061241]
is_a: UBERON:0004211 ! nephron epithelium
is_a: UBERON:0005103 ! mesonephric epithelium
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004211 ! nephron epithelium
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005331
name: mesonephric renal vesicle
def: "The renal vesicle is the primordial structure of the mesonephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]." [GO:0061243]
synonym: "mesonephric vesicle" EXACT []
xref: SCTID:361407006
xref: ZFA:0005586
is_a: UBERON:0004209 ! renal vesicle
is_a: UBERON:0005330 ! mesonephric nephron epithelium
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004209 ! renal vesicle
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: develops_from UBERON:0010534 {source="ZFA"} ! primitive mesonephric nephron
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005332
name: mesonephric S-shaped body
def: "The mesonephric S-shaped body is the successor of the mesonephric comma-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]." [GO:0061244]
is_a: UBERON:0004199 ! S-shaped body
is_a: UBERON:0010534 ! primitive mesonephric nephron
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004199 ! S-shaped body
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005333
name: mammary bud
alt_id: UBERON:0004181
def: "Mammary gland buds form by an outpocketing of the mammary placodes and grow to invade the mammary fat, when they form the mammary cord[GO]. produced along the length of the embryonic mammary ridge these buds represent the future locations of the mammary glands. Invagination of ectoderm at each bud leads to the development of epithelial diverticula, later maturing as lactiferous ducts[TFD]." [GO:0060648, http://medical-dictionary.thefreedictionary.com/mammary+bud]
synonym: "mammary gland bud" EXACT [GO:0060648]
synonym: "milk bud" RELATED []
is_a: UBERON:0005153 ! epithelial bud
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0005311 ! mammary placode
relationship: part_of UBERON:0000076 {source="PMID:20484386"} ! external ectoderm
[Term]
id: UBERON:0005334
name: oral lamina propria
synonym: "lamina propria of oral mucosa" EXACT []
xref: EMAPA:26947
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004779 ! respiratory system lamina propria
relationship: part_of UBERON:0003343
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0003343 ! mucosa of oral region
relationship: part_of UBERON:0003343 ! mucosa of oral region
[Term]
id: UBERON:0005335
name: chorioallantoic membrane
def: "The chorioallantoic membrane ( also called the chorioallantois or abbreviated to CAM ) is a vascular membrane found in eggs of some amniotes, such as birds and reptiles. It is formed by the fusion of the mesodermal layers of two developmental structures: the allantois and the chorion. Three different layers compose the chorioallantoic membrane; these are called the chorionic epithelium, the mesenchyme and the allantoic epithelium. Blood capillaries and sinuses are found between epithelial cells of the chorionic layer, allowing close contact (within 0.2 N' shaped notch. The maxillary process forms the lateral wall and floor of the orbit, and in it are ossified the zygomatic bone and the greater part of the maxilla; it meets with the lateral nasal process, from which, however, it is separated for a time by a groove, the naso-optic furrow, that extends from the furrow encircling the eyeball to the olfactory pit. The maxillary processes ultimately fuse with the lateral nasal and globular processes, and form the lateral parts of the upper lip and the posterior boundaries of the nares. It is innervated by the maxillary nerve." [Wikipedia:Maxillary_prominence]
synonym: "embryonic maxillary process" EXACT []
synonym: "maxillary process" EXACT [EHDAA2:0001070]
synonym: "maxillary process of embryo" EXACT []
synonym: "prominentia maxilaris" RELATED LATIN [Wikipedia:Maxillary_prominence]
xref: EHDAA2:0001070
xref: EHDAA:5877
xref: EMAPA:17359
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png
xref: ncithesaurus:Maxillary_Prominence
xref: SCTID:346355001
is_a: UBERON:0005423 ! developing anatomical structure
disjoint_from: UBERON:0005869 ! maxillary process of inferior nasal concha
relationship: develops_from UBERON:0007238 ! 1st arch maxillary component
relationship: part_of UBERON:0000166 ! oral opening
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0005869
name: maxillary process of inferior nasal concha
def: "From the lower border of the inferior nasal concha, a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus." [Wikipedia:Maxillary_process_of_inferior_nasal_concha]
synonym: "maxillary process of inferior concha" EXACT [FMA:54741]
synonym: "maxillary process of inferior nasal turbinate" EXACT [FMA:54741]
synonym: "maxillary process of inferior turbinate" EXACT [FMA:54741]
synonym: "maxilloturbinal" RELATED [palaeos.com/vertebrates/bones/braincase/ethmoid.html]
synonym: "p. maxillaris conchae nasalis inferioris" RELATED LATIN [Wikipedia:Maxillary_process_of_inferior_nasal_concha]
synonym: "processus maxillaris (concha nasalis inferior)" EXACT [FMA:54741]
synonym: "processus maxillaris conchae nasalis inferioris" EXACT [FMA:54741, FMA:TA]
xref: FMA:54741
xref: http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray172.png
is_a: UBERON:0000072 ! segment of respiratory tract
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0005922 ! inferior nasal concha
[Term]
id: UBERON:0005870
name: olfactory pit
def: "By the upgrowth of the surrounding parts the olfactory areas are converted into pits, the olfactory pits, which indent the fronto-nasal process and divide it into a medial and two lateral nasal processes[WP]. an indentation of the olfactory placode which ends when the pits hollows out to form the nasopharynx[GO]." [GO:0060166, Wikipedia:Olfactory_pit]
comment: we represent the relationship as develops from, though in fact the pit is formed as an indentation in the placode
synonym: "nasal pit" EXACT [XAO:0000275]
xref: AAO:0011068
xref: EFO:0003496
xref: EHDAA2:0001295
xref: EHDAA:4772
xref: EMAPA:16800
xref: SCTID:361485001
xref: XAO:0000275
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003050 ! olfactory placode
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0005871
name: palatine process of maxilla
def: "The palatine process of the maxilla (palatal process), thick and strong, is horizontal and projects medialward from the nasal surface of the bone. It forms a considerable part of the floor of the nose and the roof of the mouth and is much thicker in front than behind. Its inferior surface is concave, rough and uneven, and forms, with the palatine process of the opposite bone, the anterior three-fourths of the hard palate. It is perforated by numerous foramina for the passage of the nutrient vessels; is channelled at the back part of its lateral border by a groove, sometimes a canal, for the transmission of the descending palatine vessels and the anterior palatine nerve from the spheno-palatine ganglion; and presents little depressions for the lodgement of the palatine glands. When the two maxillae are articulated, a funnel-shaped opening, the incisive foramen, is seen in the middle line, immediately behind the incisor teeth. In this opening the orifices of two lateral canals are visible; they are named the incisive canals or foramina of Stenson; through each of them passes the terminal branch of the descending palatine artery and the nasopalatine nerve. Occasionally two additional canals are present in the middle line; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal. On the under surface of the palatine process, a delicate linear suture, well seen in young skulls, may sometimes be noticed extending lateralward and forward on either side from the incisive foramen to the interval between the lateral incisor and the canine tooth. The small part in front of this suture constitutes the premaxilla (os incisivum), which in most vertebrates forms an independent bone; it includes the whole thickness of the alveolus, the corresponding part of the floor of the nose and the anterior nasal spine, and contains the sockets of the incisor teeth. The upper surface of the palatine process is concave from side to side, smooth, and forms the greater part of the floor of the nasal cavity. It presents, close to its medial margin, the upper orifice of the incisive canal. The lateral border of the process is incorporated with the rest of the bone. The medial border is thicker in front than behind, and is raised above into a ridge, the nasal crest, which, with the corresponding ridge of the opposite bone, forms a groove for the reception of the vomer. The front part of this ridge rises to a considerable height, and is named the incisor crest; it is prolonged forward into a sharp process, which forms, together with a similar process of the opposite bone, the anterior nasal spine. The posterior border is serrated for articulation with the horizontal part of the palatine bone." [Wikipedia:Palatine_process_of_maxilla]
synonym: "palatal process" EXACT [Wikipedia:Palatine_process_of_maxilla]
synonym: "palatine process" EXACT [Wikipedia:Palatine_process_of_maxilla]
synonym: "processus palatinus (maxilla)" EXACT [FMA:52896]
synonym: "processus palatinus ossis maxillae, processus palatinus maxillae" RELATED LATIN [Wikipedia:Palatine_process_of_maxilla]
xref: FMA:52896
xref: http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray160.png
xref: SCTID:368870009
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002397 ! maxilla
[Term]
id: UBERON:0005872
name: 1st arch pharyngeal cleft
def: "A groove that is situated between the 1st and 2nd pharyngeal arch." [VHOG:OG]
subset: vertebrate_core
synonym: "1st arch branchial groove" EXACT [EHDAA2:0000008]
synonym: "1st arch groove ectoderm" EXACT [EHDAA2:0000009]
synonym: "branchial groove of 1st arch" EXACT [EMAPA:16119]
xref: EHDAA2:0000009
xref: EHDAA:575
xref: EMAPA:16119
xref: VHOG:0000554
xref: VHOG:0000969
is_a: UBERON:0005879 ! pharyngeal cleft
relationship: overlaps UBERON:0003066
relationship: overlaps UBERON:0004362
intersection_of: UBERON:0005879 ! pharyngeal cleft
intersection_of: overlaps UBERON:0003066 ! pharyngeal arch 2
intersection_of: overlaps UBERON:0004362 ! pharyngeal arch 1
relationship: overlaps UBERON:0003066 ! pharyngeal arch 2
relationship: overlaps UBERON:0004362 ! pharyngeal arch 1
[Term]
id: UBERON:0005873
name: 2nd arch pharyngeal cleft
def: "A groove that is situated between the 2nd and 3rd pharyngeal arch." [VHOG:OG]
subset: vertebrate_core
synonym: "2nd arch branchial groove" EXACT [EHDAA2:0000054]
synonym: "2nd arch groove ectoderm" EXACT [EHDAA2:0000057]
synonym: "branchial groove of 2nd arch" EXACT [EMAPA:16396]
xref: EHDAA2:0000057
xref: EHDAA:613
xref: EMAPA:16396
xref: VHOG:0000568
xref: VHOG:0000972
is_a: UBERON:0005879 ! pharyngeal cleft
relationship: overlaps UBERON:0003066
relationship: overlaps UBERON:0003114
intersection_of: UBERON:0005879 ! pharyngeal cleft
intersection_of: overlaps UBERON:0003066 ! pharyngeal arch 2
intersection_of: overlaps UBERON:0003114 ! pharyngeal arch 3
relationship: overlaps UBERON:0003066 ! pharyngeal arch 2
relationship: overlaps UBERON:0003114 ! pharyngeal arch 3
[Term]
id: UBERON:0005874
name: 3rd arch pharyngeal cleft
def: "A groove that is situated between the 3rd and 4th pharyngeal arch." [VHOG:OG]
subset: vertebrate_core
synonym: "3rd arch branchial groove" EXACT [EHDAA2:0000071]
synonym: "3rd arch groove ectoderm" EXACT [EHDAA2:0000074]
synonym: "branchial groove of 3rd arch" EXACT [EMAPA:16581]
xref: EHDAA2:0000074
xref: EHDAA:1082
xref: EMAPA:16581
xref: VHOG:0000572
xref: VHOG:0000973
is_a: UBERON:0005879 ! pharyngeal cleft
relationship: overlaps UBERON:0003114
relationship: overlaps UBERON:0003115
intersection_of: UBERON:0005879 ! pharyngeal cleft
intersection_of: overlaps UBERON:0003114 ! pharyngeal arch 3
intersection_of: overlaps UBERON:0003115 ! pharyngeal arch 4
relationship: overlaps UBERON:0003114 ! pharyngeal arch 3
relationship: overlaps UBERON:0003115 ! pharyngeal arch 4
[Term]
id: UBERON:0005875
name: 4th arch pharyngeal cleft
def: "A groove that is situated between the 4th and 5th pharyngeal arch." [VHOG:OG]
subset: vertebrate_core
synonym: "4th arch branchial groove" EXACT [RETIRED_EHDAA2:0000088]
synonym: "branchial groove of 4th arch" EXACT [EMAPA:16761]
xref: EHDAA:1665
xref: EMAPA:16761
xref: RETIRED_EHDAA2:0000088
xref: VHOG:0000577
xref: VHOG:0000968
is_a: UBERON:0005879 ! pharyngeal cleft
relationship: overlaps UBERON:0003115
relationship: overlaps UBERON:0003116
intersection_of: UBERON:0005879 ! pharyngeal cleft
intersection_of: overlaps UBERON:0003115 ! pharyngeal arch 4
intersection_of: overlaps UBERON:0003116 ! pharyngeal arch 5
relationship: overlaps UBERON:0003115 ! pharyngeal arch 4
relationship: overlaps UBERON:0003116 ! pharyngeal arch 5
[Term]
id: UBERON:0005876
name: undifferentiated genital tubercle
def: "A genital tubercle is a body of tissue present in the development of the urinary and reproductive organs. It forms in the ventral, caudal region of mammalian embryos of both sexes, and eventually develops into a phallus. In the human fetus the genital tubercle develops around week 4 of gestation, and by week 9 becomes recognizably either a clitoris or penis. This should not be confused with the sinus tubercle which is a proliferation of endoderm induced by paramesonephic ducts. Even after the phallus is developed, the term genital tubercle remains, but only as the terminal end of it[2], which develops into either the glans penis or the glans clitoridis. The genital tubercle is sensitive to dihydrotestosterone and rich in 5-alpha-reductase, so that the amount of fetal testosterone present after the second month is a major determinant of phallus size at birth.[WP]." [Wikipedia:Genital_tubercle]
comment: Taxon notes: todo - add taxon constraints. AO notes: we assume the EMAPA class is the undifferentiated form based on TS timings
synonym: "tuberculum genitale" RELATED LATIN [Wikipedia:Genital_tubercle]
synonym: "tuberculum phallicum" RELATED LATIN [Wikipedia:Genital_tubercle]
synonym: "undifferentiated genital tubercle" EXACT [VHOG:0000583]
xref: EHDAA2:0000705
xref: EHDAA:5925
xref: EMAPA:17382
xref: http://upload.wikimedia.org/wikipedia/commons/d/d6/Gray1119.png
xref: SCTID:308798005
xref: VHOG:0000583
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0004874 ! somatopleure
relationship: part_of UBERON:0009196 {source="EHDAA2"} ! indifferent external genitalia
[Term]
id: UBERON:0005879
name: pharyngeal cleft
def: "the counterpart of a branchial pouch on the ectodermal side. The first pharyngeal groove produces the external auditory meatus.[2] The rest (2, 3, and 4) are overlapped by the growing 2nd pharyngeal arch, and form the floor of the depression termed the cervical sinus, which opens ventrally, and finally obliterated[WP]." [Wikipedia:Pharyngeal_groove]
comment: AO notes: some ontologies distringuish between cleft and cleft ectoderm, we merge these here. Editor notes: consider adding location (precursor) - i.e. external (ectodermal). Note we use overlaps as the relationship to the arches
synonym: "branchial cleft" RELATED [Wikipedia:Pharyngeal_groove]
synonym: "branchial groove" RELATED [AAO:0010623, Wikipedia:Pharyngeal_groove]
synonym: "gill cleft" NARROW []
synonym: "Kiemenspalten" RELATED []
synonym: "pharyngeal groove" EXACT [Wikipedia:Pharyngeal_groove]
synonym: "sulcus pharyngei" RELATED LATIN [Wikipedia:Pharyngeal_groove]
xref: AAO:0010623
xref: http://upload.wikimedia.org/wikipedia/commons/2/20/Kiemenbogen.jpg
xref: ncithesaurus:Pharyngeal_Groove
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0006846 {source="EHDAA2"} ! groove
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm
relationship: overlaps UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0005880
name: prepollex
def: "a rudimentary additional digit on the preaxial side of the thumb of certain amphibians and mammals[dictionary.com]. A prepollex does not contain phalanges nor does it articulate with a metacarpal. It articulates with elements of the carpal (wrist) skeleton[AAO:DB]. Two or more elements located ventral and medial to the metacarpal of digit II(I). The proximal prepollex is small and round whereas distal prepollex 1 is usually large and wedge-shaped. When more elements are present, they are smaller than previous elements." [AAO:0000852, AAO:Fabrezi_and_Alberch_1996, AAO:Maglia_et_al_2007]
comment: not homologous to digit 1 of tetrapods. TODO: add articulation relations
synonym: "cartilago pre-pollicis" RELATED [AAO:0000852]
synonym: "pseudothumb" RELATED [doi:10.1098/rsbl.2009.1038]
xref: AAO:0000852
property_value: UBPROP:0000001 "Two or more elements located ventral and medial to the metacarpal of digit II(I). The proximal prepollex is small and round whereas distal prepollex 1 is usually large and wedge-shaped. When more elements are present, they are smaller than previous elements.[AAO]" xsd:string
is_a: UBERON:0005881 ! limb outgrowth
[Term]
id: UBERON:0005881
name: limb outgrowth
comment: encompasses digits and prepollex
is_a: UBERON:0002529 ! limb segment
[Term]
id: UBERON:0005882
name: alar plate
def: "the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses." [MP:0009692, Wikipedia:Alar_plate]
synonym: "alar lamina" RELATED [Wikipedia:Alar_lamina]
synonym: "lamina alaris" RELATED [Wikipedia:Alar_lamina]
synonym: "lamina dorsolateralis" RELATED [Wikipedia:Alar_lamina]
synonym: "lamina dorsolateralis; lamina alaris" RELATED LATIN [Wikipedia:Alar_plate]
xref: http://upload.wikimedia.org/wikipedia/commons/2/29/Gray646.png
is_a: UBERON:0005423 ! developing anatomical structure
relationship: dorsal_to UBERON:0005478 ! sulcus limitans of neural tube
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004061 ! neural tube mantle layer
[Term]
id: UBERON:0005883
name: neural tube lateral wall mantle layer
comment: TODO - expand subtypes post EHDAA2-revision, check lateral wall
xref: EHDAA2:0001261
is_a: UBERON:0004061 ! neural tube mantle layer
relationship: part_of UBERON:0005496 ! neural tube lateral wall
[Term]
id: UBERON:0005884
name: hyoid arch skeleton
comment: AO notes: it's not clear where AAO:'hyobranchial skeleton' belongs
synonym: "hyoid arch" RELATED INCONSISTENT [TAO:0001276]
synonym: "hyoid arch skeleton" EXACT [ZFA:0001276]
synonym: "hyoid bars" NARROW [TAO:0001276]
synonym: "pharyngeal arch 2 skeleton" EXACT [ZFA:0001276]
synonym: "visceral arch 2" RELATED INCONSISTENT [TAO:0001276]
xref: AAO:0000665
xref: AAO:0010370
xref: TAO:0001276
xref: XAO:0003177
xref: ZFA:0001276
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: subdivision_of UBERON:0003066
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0003066 ! pharyngeal arch 2
relationship: part_of UBERON:0003066 {source="ZFA"} ! pharyngeal arch 2
relationship: part_of UBERON:0008895 {source="ZFA"} ! splanchnocranium
relationship: part_of UBERON:0008895 ! splanchnocranium
relationship: part_of UBERON:0011156 {source="cjm"} ! facial skeleton
relationship: subdivision_of UBERON:0003066 ! pharyngeal arch 2
[Term]
id: UBERON:0005886
name: post-hyoid pharyngeal arch skeleton
comment: Editor notes: Consider alternate naming. AO notes: XAO class belongs here, as it clearly refers to arches 3-7
synonym: "branchial arch skeleton" RELATED SENSU [XAO:0003180]
synonym: "gill arch 1-5 skeleton" EXACT [TAO:0000095]
synonym: "gill arch skeleton" RELATED [XAO:0003180]
synonym: "pharyngeal arch 3-7 skeleton" EXACT [ZFA:0000095]
synonym: "visceral arch skeleton" RELATED [XAO:0003180]
xref: SCTID:346439007
xref: TAO:0000095
xref: XAO:0003180
xref: ZFA:0000095
property_value: UBPROP:0000001 "Skeletal and cartilaginous elements of the gill arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first gill arch, or the third pharyngeal arch, but some authors do not follow this convention. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass anatomical cluster (CARO:0000041) CHANGED TO: part_of anatomical cluster (UBERON:0000477)[TAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: subdivision_of UBERON:0008896
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0008896 ! post-hyoid pharyngeal arch
relationship: part_of UBERON:0008895 {source="ZFA"} ! splanchnocranium
relationship: part_of UBERON:0008896 {source="ZFA"} ! post-hyoid pharyngeal arch
relationship: subdivision_of UBERON:0008896 ! post-hyoid pharyngeal arch
[Term]
id: UBERON:0005889
name: zygote cortex
comment: todo - request from GO
synonym: "cortex" RELATED [XAO:0000216]
xref: AAO:0010327
xref: EMAPA:18427
xref: XAO:0000216
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0005890
name: gonad germinal epithelium
synonym: "coelomic epithelium" RELATED [EMAPA:17384]
synonym: "germinal epithelium" EXACT [RETIRED_EHDAA2:0000706]
xref: BTO:0004524
xref: EMAPA:17384
xref: EV:0200046
xref: RETIRED_EHDAA2:0000706
xref: VHOG:0000629
is_a: UBERON:0004909 ! epithelium of gonad
relationship: part_of UBERON:0000991 ! gonad
relationship: part_of UBERON:0005891 ! coelomic epithelium
[Term]
id: UBERON:0005891
name: coelomic epithelium
def: "The epithelial lining of the surface of the body wall and abdominal organs." [Wikipedia:Coelomic_epithelium, XAO:0000329]
xref: EHDAA2:0004049
xref: XAO:0000329
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0004871 ! somatic layer of lateral plate mesoderm
relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm
[Term]
id: UBERON:0005892
name: mesonephric early distal tubule
def: "The mesonephric equivalent of the ascending limb, or straight distal segment, of metanephric nephrons." [XB:curator]
synonym: "mesonephric ascending limb" RELATED [XAO:0000333]
synonym: "mesonephric straight distal segment" RELATED [XAO:0000333]
xref: AAO:0010391
xref: XAO:0000333
is_a: UBERON:0000083 ! mesonephric tubule
relationship: develops_from UBERON:0005322 ! mesonephric nephron
[Term]
id: UBERON:0005893
name: leg bone
def: "A bone that is part of the region of the hindlimb that includes the zeugopod and stylopod. Examples: patella, femur, tibia. Counter-examples: any foot phalanx" [UBERON:cjm]
xref: MA:0000670
xref: MESH:A.02.835.232.500
is_a: UBERON:0003464 ! hindlimb bone
relationship: part_of UBERON:0000978
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0005894
name: locomotive weight-bearing appendage
def: "A leg is a limb on which an animal walks and stands (GO:0035110)." [GO:0035110, Wikipedia:Leg]
comment: Functional grouping, currently encompasses vertebrate and insect legs. This class was originally introduced to support GO:0035110, but this has been obsoleted.
subset: functional_classification
synonym: "leg" RELATED []
is_a: UBERON:0000026 ! appendage
[Term]
id: UBERON:0005895
name: insect leg
def: "The walking appendages of each segment of the ventral adult external thorax[FBbt]. A leg derived from an imaginal disc[GO]." [FBbt:00004640, GO:0007480]
synonym: "imaginal disc-derived leg" EXACT [GO:0007480]
xref: FBbt:00004640
xref: MAT:0000095
xref: MIAA:0000095
xref: TGMA:0000164
is_a: UBERON:0005894 ! locomotive weight-bearing appendage
[Term]
id: UBERON:0005896
name: jointed/prehensile appendage
def: "A jointed or prehensible appendage used for locomotion or manipulation. Examples: human arm, human leg, octopus tentacle, insect limb[Wikipedia]. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin[GO]." [GO:0035108, Wikipedia:Limb_(anatomy)]
synonym: "extremitaet" RELATED [BTO:0001492]
synonym: "extremity" RELATED []
synonym: "limb" RELATED [AEO:0000172, BTO:0001492, GO:0035108]
xref: AEO:0000172
xref: BTO:0001492
xref: MESH:A.01.378
xref: ncithesaurus:Extremities
is_a: UBERON:0000026 ! appendage
[Term]
id: UBERON:0005897
name: hand bone
def: "A bone that is part of the hand skeleton" [UBERON:cjm]
synonym: "bone of hand" EXACT []
synonym: "bone of manus" EXACT []
synonym: "bone of pectoral limb autopod" EXACT []
synonym: "bone of pectoral limb autopodium" EXACT []
synonym: "forelimb autopod bone" EXACT []
synonym: "forelimb autopodium bone" EXACT []
xref: MA:0000619
xref: SCTID:265809008
is_a: UBERON:0008962 ! forelimb bone
is_a: UBERON:0011250 ! autopod bone
relationship: part_of UBERON:0002398
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0001442 ! skeleton of hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0005899
name: foot bone
def: "A bone that is part of the foot skeleton" [UBERON:cjm]
synonym: "bone of foot" EXACT []
synonym: "bone of pes" EXACT []
xref: GAID:192
xref: MA:0000643
xref: MESH:A.02.835.232.300
xref: ncithesaurus:Foot_Bone
xref: OpenCyc:Mx4rv5ridZwpEbGdrcN5Y29ycA
xref: SCTID:361371005
is_a: UBERON:0003464 ! hindlimb bone
is_a: UBERON:0011250 ! autopod bone
relationship: part_of UBERON:0002387
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0001445 ! skeleton of foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0005902
name: occipital region
def: "Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occipital condyles." [TAO:0001414, UBERONREF:0000007]
comment: TODO - check
synonym: "basicranial region" EXACT [ZFA:0001414]
synonym: "occipital part of head" EXACT [FMA:49187]
xref: AAO:0010199
xref: FMA:49187
xref: SCTID:362618001
xref: TAO:0001414
xref: XAO:0003173
xref: ZFA:0001414
property_value: UBPROP:0000001 "An anatomical cluster that is located in the posterior region of the neurocranium and forms the margin of the foramen margin and occipital condyles.[AAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occiptal condyle.[TAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0005903
name: duct of seminal vesicle
def: "Each seminal vesicle consists of a single tube, coiled upon itself, and giving off several irregular cecal diverticula; the separate coils, as well as the diverticula, are connected together by fibrous tissue. When uncoiled, the tube is about the diameter of a quill, and varies in length from 10 to 15 cm.; it ends posteriorly in a cul-de-sac; its anterior extremity becomes constricted into a narrow straight duct called the excretory duct of seminal gland (or duct of the seminal vesicle), which joins with the corresponding ductus deferens to form the ejaculatory duct[WP]." [Wikipedia:Excretory_duct_of_seminal_gland]
synonym: "ductus excretorius (vesicula seminalis)" EXACT [FMA:19473]
synonym: "ductus excretorius glandulae vesiculosae" EXACT [FMA:19473, FMA:TA]
synonym: "ductus excretorius glandulae vesiculosae" RELATED LATIN [Wikipedia:Excretory_duct_of_seminal_gland]
synonym: "excretory duct of seminal gland" EXACT [FMA:19473]
synonym: "seminal vesicle duct" EXACT [FMA:19473]
xref: EMAPA:29282
xref: FMA:19473
xref: http://upload.wikimedia.org/wikipedia/commons/9/97/Gray1160.png
xref: SCTID:279675008
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: part_of UBERON:0000998
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0000998 ! seminal vesicle
relationship: channel_for UBERON:0010143 ! seminal vesicle fluid
relationship: channels_into UBERON:0000999 ! ejaculatory duct
relationship: part_of UBERON:0000998 ! seminal vesicle
[Term]
id: UBERON:0005904
name: duct of male reproductive system
comment: groups the individual ducts in a variety of species
subset: grouping_class
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000079
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0005905
name: insect labrum
def: "A mouthpart of insects." [Wikipedia:Insect_mouthparts#Labrum]
comment: Editor notes: this term should be ceded to the arthropod anatomy ontology
synonym: "insect labium" EXACT [BTO:0004104]
synonym: "labium" RELATED [BTO:0004104]
synonym: "labrum" RELATED [BTO:0004104]
xref: BTO:0004104
xref: FBbt:00004522
xref: HAO:0000456
xref: TADS:0000039
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0005906
name: serous sac
def: "Organ with organ cavity, which has as parts a serous membrane and a serous cavity . Examples: pleural sac, pericardial sac, tendon sheath, bursa.[FMA]" [FMA:9689]
xref: FMA:9689
xref: SCTID:362890006
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0005908
name: conjunctival sac
def: "Serous sac, which has as parts the conjunctiva and the cavity of conjunctiva. Examples: There are only two conjunctival sacs, the right and the left.[FMA]" [FMA:20291]
xref: EMAPA:18233
xref: FMA:20291
xref: SCTID:362531001
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005906 {source="FMA"} ! serous sac
relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye
relationship: part_of UBERON:0001801 {source="MA"} ! anterior segment of eyeball
[Term]
id: UBERON:0005910
name: transitional epithelium
def: "Multilaminar epithelium, which of consists of more than one layer of epithelial cells, in contact with a basement membrane, that can undergo distention and contraction without losing its integrity and consistency. Examples: urothelium.[FMA]" [FMA:63914, FMA:FMA, Wikipedia:Transitional_epithelium]
comment: see comments for urothelium
synonym: "epithelium transitionale" EXACT [FMA:63914]
synonym: "urothelium" NARROW [EMAPA:28089, Wikipedia:Transitional_epithelium]
xref: BTO:0003906
xref: FMA:63914
xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Harnblase_Urothel.png
xref: MESH:A.10.272.850
xref: ncithesaurus:Transitional_Epithelium
xref: SCTID:30117005
is_a: UBERON:0000486 ! multilaminar epithelium
is_a: UBERON:0005911 ! endo-epithelium
[Term]
id: UBERON:0005911
name: endo-epithelium
def: "Epithelium that derives from the endoderm. Examples: urothelium, transitional epithelium of ureter, epithelium of prostatic gland.[FMA]" [FMA:69065, FMA:FMA]
xref: FMA:69065
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000925
intersection_of: UBERON:0000483 ! epithelium
intersection_of: develops_from UBERON:0000925 ! endoderm
relationship: develops_from UBERON:0000925 ! endoderm
[Term]
id: UBERON:0005912
name: transitional epithelium of major calyx
synonym: "urothelium of major calyx" EXACT [OBOL:automatic]
xref: FMA:263266
is_a: UBERON:0003350 ! epithelium of mucosa
is_a: UBERON:0004788 ! kidney pelvis urothelium
relationship: part_of UBERON:0005007
intersection_of: UBERON:0001254 ! urothelium of ureter
intersection_of: part_of UBERON:0005007 ! mucosa of major calyx
relationship: part_of UBERON:0005007 ! mucosa of major calyx
[Term]
id: UBERON:0005913
name: zone of bone organ
synonym: "bone organ zone" EXACT [FMA:10483]
xref: FMA:10483
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0005919
name: supreme nasal concha
def: "a thin bony plate occasionally found projecting from the inner wall of the ethmoid labyrinth, above the bony superior nasal concha, and the mucous membrane covering the plate." [http://medical-dictionary.thefreedictionary.com/supreme+nasal+concha]
synonym: "concha nasi suprema" EXACT [FMA:57457, FMA:TA]
synonym: "highest nasal concha" EXACT [FMA:57457]
synonym: "supreme nasal turbinate" EXACT [FMA:57457]
synonym: "supreme turbinate" EXACT [FMA:57457]
xref: FMA:57457
xref: SCTID:361935003
is_a: UBERON:0003973 ! nasal concha of ethmoid bone
[Term]
id: UBERON:0005920
name: superior nasal concha
def: "The back part of the medial surface of the labyrinth of ethmoid is subdivided by a narrow oblique fissure, the superior meatus of the nose, bounded above by a thin, curved plate, the superior nasal concha. The bone found in superior nasal concha is part of the ethmoid bone." [Wikipedia:Superior_nasal_concha]
synonym: "superior concha" RELATED [Wikipedia:Superior_nasal_concha]
synonym: "superior nasal turbinate" EXACT [FMA:57458]
synonym: "superior turbinate" EXACT [FMA:57458]
xref: FMA:57458
xref: http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray151.png
xref: SCTID:361934004
is_a: UBERON:0003973 ! nasal concha of ethmoid bone
[Term]
id: UBERON:0005921
name: middle nasal concha
def: "The medial surface of the labyrinth of ethmoid consists of a thin lamella, which descends from the under surface of the cribriform plate, and ends below in a free, convoluted margin, the middle nasal concha. It is rough, and marked above by numerous grooves, directed nearly vertically downward from the cribriform plate; they lodge branches of the olfactory nerves, which are distributed to the mucous membrane covering the superior nasal concha." [Wikipedia:Middle_nasal_concha]
synonym: "middle concha" RELATED [Wikipedia:Middle_nasal_concha]
synonym: "middle nasal turbinate" EXACT [FMA:57459]
synonym: "middle turbinate" EXACT [FMA:57459]
xref: FMA:57459
xref: http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray151.png
xref: SCTID:361933005
is_a: UBERON:0003973 ! nasal concha of ethmoid bone
[Term]
id: UBERON:0005922
name: inferior nasal concha
def: "The inferior nasal concha (Inferior Turbinated Bone) is one of the turbinates in the nose. It extends horizontally along the lateral wall of the nasal cavity [Fig. 1] and consists of a of spongy bone, curled upon itself like a scroll. Each inferior nasal concha is considered a facial pair of bones since they arise from the maxillae bones and projects horizontally into the nasal cavity. They are also termed 'inferior nasal turbinates' because they function similar to that of a turbine. As the air passes through the turbinates, the air is churned against these mucosa-lined bones in order to receive warmth, moisture and cleansing. Superior to inferior nasal concha are the middle nasal concha and superior nasal concha which arise from the cranial portion of the skull. Hence, these two are considered as a part of the cranial bones. It has two surfaces, two borders, and two extremities." [Wikipedia:Inferior_nasal_concha]
comment: note that in FMA this is not classified with the other turbinates. In Uberon we subdivide the turbinates into the ethmoturbinates and the inferior turbinate. TODO: check ethmoidal process of inferior nasal concha
synonym: "concha nasi inferior, concha nasalis inferior" RELATED LATIN [Wikipedia:Inferior_nasal_concha]
synonym: "inferior concha" RELATED [Wikipedia:Inferior_nasal_concha]
synonym: "inferior nasal turbinate" EXACT [FMA:54736]
synonym: "inferior turbinate" EXACT [FMA:54736]
synonym: "inferior turbinated" RELATED [Wikipedia:Inferior_nasal_concha]
xref: FMA:54736
xref: http://upload.wikimedia.org/wikipedia/commons/6/62/Gray192.png
xref: ncithesaurus:Inferior_Turbinate
xref: SCTID:361932000
is_a: UBERON:0001762 ! nasal concha
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
is_a: UBERON:0011164 ! neurocranium bone
relationship: connected_to UBERON:0001682 {source="dbpedia"} ! palatine bone
relationship: connected_to UBERON:0002397 {source="dbpedia"} ! maxilla
relationship: develops_from UBERON:0006332 {source="ISBN10:1588903958"} ! nasal capsule
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0005925
name: ethmoidal process of inferior nasal concha
def: "Behind the lacrimal process of the inferior nasal conchae lies a broad, thin plate, the ethmoidal process, which ascends to join the uncinate process of the ethmoid; from its lower border a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus." [Wikipedia:Ethmoid_boneal_process_of_inferior_nasal_concha]
synonym: "ethmoidal process of inferior concha" EXACT [FMA:54742]
synonym: "ethmoidal process of inferior nasal turbinate" EXACT [FMA:54742]
synonym: "ethmoidal process of inferior turbinate" EXACT [FMA:54742]
synonym: "processus ethmoidalis (concha nasalis inferior)" EXACT [FMA:54742]
synonym: "processus ethmoidalis conchae nasalis inferioris" EXACT [FMA:54742, FMA:TA]
synonym: "processus ethmoidalis conchae nasalis inferioris" RELATED LATIN [Wikipedia:Ethmoidal_process_of_inferior_nasal_concha]
xref: FMA:54742
is_a: UBERON:0000072 ! segment of respiratory tract
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0005922 ! inferior nasal concha
[Term]
id: UBERON:0005928
name: external naris
def: "Surface structure that provides one of the small external openings of the head that give passage to air for breathing." [OMD:nostril, Wikipedia:Nostril]
comment: Fish have two pairs of external nostrils.
subset: vertebrate_core
synonym: "anterior naris" EXACT [ZFA:0001427]
synonym: "blowhole" NARROW [Wikipedia:Blowhole_(anatomy)]
synonym: "external nares" EXACT PLURAL []
synonym: "naris" BROAD [ZFA:0000550]
synonym: "nostril" EXACT [FMA:59645, XAO:0003033]
xref: AAO:0000024
xref: AAO:0000983
xref: AAO:0010358
xref: EHDAA2:0001275
xref: EHDAA:9085
xref: EMAPA:17848
xref: FMA:59645
xref: MA:0001320
xref: ncithesaurus:Nostril
xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA
xref: SCTID:276165005
xref: TAO:0000550
xref: VHOG:0000544
xref: XAO:0003033
xref: ZFA:0000550
property_value: UBPROP:0000001 "Hole on the nasal capsule that connects the nasal cavity with the exterior.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass nasal opening (AAO:0000316)[AAO]" xsd:string
is_a: UBERON:0000003 {source="MA"} ! naris
is_a: UBERON:0003102 {source="ZFA"} ! surface structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000004 ! olfactory apparatus
[Term]
id: UBERON:0005931
name: primary choana
def: "initial opening of the nasal pits and olfactory sac of the embryo into the rostral part of the primordial oronasal cavity, before the formation of the secondary palate." [http://www.drugs.com/dict/primary-choana.html]
comment: TODO - check. MA says part_of external naris.
xref: EHDAA:9087
xref: EMAPA:17851
xref: MA:0001322
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0005928 ! external naris
[Term]
id: UBERON:0005932
name: bulb of hair follicle
comment: see https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376
synonym: "coat hair bulb" NARROW SENSU [MA:0000161]
synonym: "hair bulb" EXACT [FMA:70666]
synonym: "hair follicle bulb" EXACT [FMA:70666]
xref: EMAPA:18770
xref: FMA:70666
xref: MA:0000161
xref: MA:0000783
xref: ncithesaurus:Hair_Bulb
xref: SCTID:361360009
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0005933
name: hair root sheath
comment: see https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376
xref: EMAPA:18772
xref: MA:0000162
xref: MA:0000784
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0005932 ! bulb of hair follicle
[Term]
id: UBERON:0005941
name: hair inner root sheath
def: "The cells of the inner root sheath are interlocked with those of the cuticle of the hair, firmly anchoring the hair in the follicle. The inner root sheath must grow at the same rate as the hair, or faster as it molds and guides the shaft in its passage outward[BTO]. the multilayered tube composed of terminally differentiated hair follicle keratinocytes that is surrounded by the outer root sheath; the layers of the inner root sheath include the companion layer, Henle's layer, Huxley's layer and the inner root sheath cuticle[MP]." [https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376, Keratin.com:http://www.keratin.com/, MP:0010685]
synonym: "hair follicle inner root sheath" EXACT [MP:0010685]
synonym: "inner root sheath" RELATED [BTO:0003971]
synonym: "inner root sheath of hair follicle" EXACT [FMA:70935]
synonym: "inner sheath of hair follicle" EXACT [FMA:70935]
synonym: "internal root sheath of hair follicle" EXACT [FMA:70935]
xref: BTO:0003971
xref: FMA:70935
xref: MA:0000779
xref: MA:0000785
is_a: UBERON:0005933 ! hair root sheath
[Term]
id: UBERON:0005942
name: hair outer root sheath
def: "It surrounds the hair follicle like a sleeve all the way to the bulb. The outer root sheath is essentially a stratified epithelium that is contiguous with the epidermis." [https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376, Keratin.com:http://www.keratin.com/]
synonym: "external root sheath of hair follicle" EXACT [FMA:70943]
synonym: "hair follicle outer root sheath" EXACT [BTO:0003969]
synonym: "ORS" RELATED [BTO:0003969]
synonym: "outer root sheath" RELATED [BTO:0003969]
synonym: "outer root sheath of hair follicle" EXACT [FMA:70943]
xref: BTO:0003969
xref: FMA:70943
xref: MA:0000780
xref: MA:0000786
xref: SCTID:319224003
is_a: UBERON:0005933 ! hair root sheath
[Term]
id: UBERON:0005943
name: hair root sheath matrix
xref: MA:0000781
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0005933 ! hair root sheath
[Term]
id: UBERON:0005944
name: axial skeleton
def: "Subdivision of skeleton which consists of cranial skeleton, set of all vertebrae, set of all ribs and sternum[FMA, modified]." [FMA:71221, VSAO:0000056, Wikipedia:Axial_skeleton]
comment: note that in versions of FMA prior to v3, axial skeleton did _not_ include the skull
subset: uberon_slim
synonym: "skeleton axiale" RELATED LATIN [Wikipedia:Axial_skeleton]
xref: AAO:0000963
xref: EMAPA:17214
xref: EMAPA:18043
xref: FMA:71221
xref: http://upload.wikimedia.org/wikipedia/commons/8/8b/Axial_skeleton_diagram.svg
xref: MA:0000308
xref: ncithesaurus:Axial_Skeleton
xref: SCTID:361725000
xref: VSAO:0000056
xref: XAO:0004011
property_value: UBPROP:0000001 "Skeletal subdivision of the central body axis including the cranium, vertebrae, notochord, ribs, and sternum.[VSAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: connected_to UBERON:0002091 ! entire appendicular skeleton
relationship: develops_from UBERON:0003089 ! sclerotome
relationship: part_of UBERON:0004288 ! skeleton
relationship: part_of UBERON:0011137 ! axial skeletal system
[Term]
id: UBERON:0005945
name: neurocranial trabecula
synonym: "neurocranial trabeculae" EXACT PLURAL [ZFA:0001321]
synonym: "trabecula" BROAD SENSU [ZFA:0001321]
synonym: "trabecular cartilage" BROAD [ZFA:0001321]
xref: EFO:0003677
xref: TAO:0001321
xref: ZFA:0001321
is_a: UBERON:0000440 ! trabecula
is_a: UBERON:0003932 {source="ZFA"} ! cartilaginous element of chondrocranium
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001703 {source="ZFA"} ! neurocranium
relationship: part_of UBERON:0003112 {source="ZFA"} ! olfactory region
[Term]
id: UBERON:0005946
name: outflow tract of atrium
synonym: "outflow part of atrium" EXACT [FMA:14141]
xref: FMA:14141
is_a: UBERON:0004145 ! outflow tract
relationship: part_of UBERON:0002081
intersection_of: UBERON:0004145 ! outflow tract
intersection_of: part_of UBERON:0002081 ! cardiac atrium
relationship: continuous_with UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0005953
name: outflow part of right ventricle
def: "Outflow part of ventricle which is continuous with the pulmonary trunk[FNA]. The right ventricular outflow tract (RVOT) is an infundibular extension of the ventricular cavity which connects to the pulmonary artery[WP]." [FMA:7216]
synonym: "conus arteriosus (infundibulum)" EXACT [FMA:7216]
synonym: "infundibulum" BROAD [Wikipedia:Conus_arteriosus]
synonym: "infundibulum of right ventricle" EXACT [FMA:7216]
synonym: "outflow tract of right ventricle" EXACT [FMA:7216]
synonym: "pulmonary conus" EXACT [FMA:7216]
synonym: "RVOT" EXACT []
xref: FMA:7216
xref: ncithesaurus:Infundibulum
xref: SCTID:244379003
is_a: UBERON:0005337 ! outflow tract of ventricle
relationship: part_of UBERON:0002080
intersection_of: UBERON:0005337 ! outflow tract of ventricle
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: continuous_with UBERON:0002333 ! pulmonary trunk
relationship: develops_from UBERON:0009889 {source="PMID:17276708"} ! secondary heart field
relationship: part_of UBERON:0002080 ! heart right ventricle
[Term]
id: UBERON:0005956
name: outflow part of left ventricle
def: "Outflow part of ventricle which is continuous with the aorta[FMA]. The left ventricular outflow tract (LVOT), which connects to the aorta, is nearly indistinguishable from the rest of the ventricle[WP]." [FMA:9473]
synonym: "aortic vestibule" EXACT [FMA:9473]
synonym: "left ventricular outflow" EXACT [FMA:9473]
synonym: "LVOT" EXACT []
synonym: "outflow tract of left ventricle" EXACT [FMA:9473]
synonym: "vestibulum aortae" EXACT [FMA:9473, FMA:TA]
xref: FMA:9473
xref: SCTID:264070001
is_a: UBERON:0005337 ! outflow tract of ventricle
relationship: part_of UBERON:0002084
intersection_of: UBERON:0005337 ! outflow tract of ventricle
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0002084 ! heart left ventricle
[Term]
id: UBERON:0005965
name: outflow part of right atrium
def: "Outflow part of atrium which consists of wall and cavity of the outflow part of right atrium and the tricuspid valve.[FMA]" [FMA:9550, FMA:FMA]
synonym: "main part of right atrium" EXACT [FMA:9550]
synonym: "outflow tract of right atrium" EXACT [FMA:9550]
xref: FMA:9550
is_a: UBERON:0005946 ! outflow tract of atrium
relationship: part_of UBERON:0002078
intersection_of: UBERON:0005946 ! outflow tract of atrium
intersection_of: part_of UBERON:0002078 ! right atrium
relationship: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0005966
name: outflow part of left atrium
synonym: "main part of left atrium" EXACT [FMA:9551]
synonym: "outflow tract of left atrium" EXACT [FMA:9551]
xref: FMA:9551
is_a: UBERON:0005946 ! outflow tract of atrium
relationship: part_of UBERON:0002079
intersection_of: UBERON:0005946 ! outflow tract of atrium
intersection_of: part_of UBERON:0002079 ! left atrium
relationship: part_of UBERON:0002079 ! left atrium
[Term]
id: UBERON:0005967
name: conotruncal ridge
def: "One of the pair of spiral mesenchymal swellings in the primordial ventricular outflow tract, that eventually fuse to form the conotruncal septum, dividing the subvalvular outflow tract and contributing to the membranous interventricular septum[MP]" [MP:0010585, PMID:8823298]
synonym: "aortico-pulmonary spiral ridges" EXACT [MP:0010585]
synonym: "bulbar ridge" EXACT [MP:0010585]
synonym: "conotruncal cushion" EXACT [MP:0010585]
synonym: "endocardial ridge" EXACT [MP:0010585]
synonym: "outflow tract cushion" EXACT [MP:0010585]
synonym: "outflow tract endocardial cushion" EXACT [MP:0010585]
xref: EHDAA:1914
xref: EMAPA:17332
xref: EMAPA:17867
xref: RETIRED_EHDAA2:0000194
xref: VHOG:0001385
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0009751 ! cardiac mesenchyme
relationship: part_of UBERON:0004706 ! bulbus cordis
relationship: part_of UBERON:0005337 ! outflow tract of ventricle
[Term]
id: UBERON:0005968
name: infundibulum of hair follicle
synonym: "dermal piliary canal" EXACT [FMA:70722]
synonym: "hair follicle infundibulum" EXACT [FMA:70722]
xref: FMA:70722
xref: ncithesaurus:Hair_Follicle_Infundibulum
xref: SCTID:319522000
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0005969
name: reticulum trabeculare
alt_id: UBERON:0004028
def: "a fenestrated endothelial-like tissue situated at the intersection of the cornea and the iris[GO]. The trabecular meshwork is an area of tissue in the eye located around the base of the cornea, near the ciliary body, and is responsible for draining the aqueous humor from the eye via the anterior chamber (the chamber on the front of the eye covered by the cornea). The tissue is spongy and lined by trabeculocytes; it allows fluid to drain into a set of tubes called Schlemm's canal flowing into the blood system[WP]. A porelike structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates to the canal of Schlemm.[GAID] the pore-like structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates[MP]." [GO:0002930, MP:0005203, Wikipedia:Trabecular_meshwork]
comment: TODO check syns - ligaments
synonym: "cribiform ligament" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "Hueck's ligament" RELATED [BTO:0001605]
synonym: "iridis" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "ligamentum peactin-tum iridis" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "ligamentum pectinatum" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "ligamentum pectinatum anguli iridocornealis" RELATED [BTO:0001605]
synonym: "ligamentum pectinatum iridis" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "pectinate ligament" RELATED [BTO:0001605]
synonym: "pectinate ligament of iris" RELATED [BTO:0001605]
synonym: "reticulum trabeculare sclerae" RELATED LATIN [Wikipedia:Trabecular_meshwork]
synonym: "scleral trabeculae" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "scleral trabecular" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "scleral trabecule" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "scribiform ligament" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "trabecular mesh" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "trabecular meshwork" RELATED [BTO:0001605, GO:0002930]
synonym: "trabecular meshwork of the eye" EXACT [Wikipedia:Trabecular_meshwork]
xref: BTO:0001605
xref: EFO:0003077
xref: EV:0100352
xref: GAID:897
xref: http://upload.wikimedia.org/wikipedia/commons/2/22/Gray870.png
xref: MESH:A.09.371.060.932
xref: ncithesaurus:Trabecular_Meshwork
xref: SCTID:280694002
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
disjoint_from: UBERON:0006205 ! pectineal ligament
relationship: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0003956 ! aqueous drainage system
relationship: surrounds UBERON:0001766 ! anterior chamber of eyeball
[Term]
id: UBERON:0005970
name: brain commissure
property_value: UBPROP:0000001 "any of the nerve fiber tracts that span the longitudinal fissure between the cerebral and/or cerebellar hemispheres of the brain[MP]" xsd:string
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0007702 ! tract of brain
relationship: part_of UBERON:0000955
intersection_of: UBERON:0001020 ! commissure
intersection_of: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0005971
name: amniotic fold
def: "the folded edge of the amnion where it rises over and finally encloses the embryo[TFD]." [http://medical-dictionary.thefreedictionary.com/amniotic+fold]
xref: EMAPA:16076
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000305 ! amnion
[Term]
id: UBERON:0005972
name: tunnel of Corti
def: "A triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti." [MP:0003151]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002227 ! spiral organ of cochlea
[Term]
id: UBERON:0005973
name: blood-inner ear barrier
def: "the function of the group of barriers and transport systems which regulate the transport of various substances from blood to inner ear tissue and maintain the microhomeostasis and functional integrity of the inner ear; the endothelial cells of the inner ear blood capillaries, linked to each other by tight junctions, represent the main component of the blood-inner ear barrier" [MP:0004999]
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0005974
name: posterior cerebellomedullary cistern
def: "A space between the cerebellum and the dorsal surface of the medulla[MP]. The cisterna magna (or cerebellomedullary cistern) is one of three principal openings in the subarachnoid space between the arachnoid and pia mater layers of the meninges surrounding the brain. The openings are collectively referred to as cisterns. The cisterna magna is located between the cerebellum and the dorsal surface of the medulla oblongata. Cerebrospinal fluid produced in the fourth ventricle drains into the cisterna magna via the lateral apertures and median aperture. The two other principal cisterns are the pontine cistern located between the pons and the medulla, and the interpeduncular cistern located between the cerebral peduncles. Cerebral spinal fluid can also be obtained by puncture of the cisterna magna (cistern puncture)." [MP:0009036, Wikipedia:Cisterna_magna]
synonym: "cisterna cerebellomedullaris" RELATED LATIN [Wikipedia:Cisterna_magna]
synonym: "cisterna cerebellomedullaris posterior" EXACT [MP:0009033]
synonym: "cisterna magna" EXACT [MP:0009033]
xref: FMA:83721
xref: GAID:690
xref: http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png
xref: MESH:A.08.186.566.166.686.351
xref: ncithesaurus:Cisterna_Magna
xref: SCTID:280391002
is_a: UBERON:0004049 ! cerebellomedullary cistern
[Term]
id: UBERON:0005975
name: hair follicle bulge
def: "the area located in the bottom of the permanent portion of a resting (telogen) hair follicle where the cells of the external root sheath of the hair follicle are contiguous with the basal layer of the epidermis; this portion of the follicle is involved in the generation of a new hair at the onset of the hair growth cycle (anagen) and contains the hair follicle stem cells" [MP:0009759]
synonym: "bulge of hair follicle" EXACT [FMA:70735]
xref: BTO:0004904
xref: FMA:70735
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0005976
name: ansiform lobule crus I
def: "." [MP:0010002]
comment: TODO - check
synonym: "crus II of the ansiform lobule (HVII)" EXACT [NIF_GrossAnatomy:nlx_anat_20081209]
synonym: "crus primum lobuli ansiformis cerebelli [h vii a]" EXACT [FMA:72524, FMA:TA]
synonym: "first crus of ansiform lobule of cerebellum [h vii a]" EXACT [FMA:72524]
synonym: "hemispheric lobule viibi" EXACT [NIF_GrossAnatomy:nlx_anat_20081209]
synonym: "lobulus ansiform crus II" EXACT [NIF_GrossAnatomy:nlx_anat_20081209]
synonym: "lobulus semilunaris inferior" EXACT [NIF_GrossAnatomy:nlx_anat_20081209]
synonym: "lobulus semilunaris superior cerebelli" EXACT [FMA:72524, FMA:TA]
synonym: "posterior superior lobule" EXACT [FMA:72524]
synonym: "semilunar lobule-2 (superior)" EXACT [FMA:72524]
synonym: "superior semilunar lobule" EXACT [FMA:72524]
synonym: "superior semilunar lobule " EXACT [FMA:72524]
synonym: "superior semilunar lobule of cerebellum" EXACT [FMA:72524]
xref: ABA:ANcr1
xref: FMA:72524
xref: NIF_GrossAnatomy:nlx_anat_20081209
is_a: UBERON:0005348 ! ansiform lobule
[Term]
id: UBERON:0005977
name: ansiform lobule crus II
def: "." [MP:0010003]
comment: TODO - check
synonym: "crus I of the ansiform lobule (HVII)" EXACT [NIF_GrossAnatomy:nlx_anat_20081208]
synonym: "crus secundum lobuli ansiformis cerebelli [h vii a" EXACT [FMA:72525, FMA:TA]
synonym: "hemispheric lobule viia" EXACT [NIF_GrossAnatomy:nlx_anat_20081208]
synonym: "inferior semilunar lobule" EXACT [FMA:72525]
synonym: "inferior semilunar lobule of cerebellum" EXACT [FMA:72525]
synonym: "lobulus ansiform crus I" EXACT [NIF_GrossAnatomy:nlx_anat_20081208]
synonym: "lobulus semilunaris inferior cerebelli" EXACT [FMA:72525, FMA:TA]
synonym: "lobulus semilunaris superior" EXACT [NIF_GrossAnatomy:nlx_anat_20081208]
synonym: "posterior inferior lobule" EXACT [FMA:72525]
synonym: "second crus of ansiform lobule of cerebellum [h vii a]" EXACT [FMA:72525]
synonym: "semilunar lobule-2 (inferior)" EXACT [FMA:72525]
xref: ABA:ANcr2
xref: FMA:72525
xref: NIF_GrossAnatomy:nlx_anat_20081208
is_a: UBERON:0005348 ! ansiform lobule
[Term]
id: UBERON:0005978
name: olfactory bulb outer nerve layer
def: "the outermost layer of the olfactory bulb; consists primarily of olfactory afferent axons and ensheathing glia" [MP:0010057]
is_a: UBERON:0004001 ! olfactory bulb layer
relationship: part_of UBERON:0002264 ! olfactory bulb
[Term]
id: UBERON:0005979
name: crista terminalis
def: "the vertical crest of the interior wall of the right atrium that lies to the right of the sinus of the vena cava and separates this from the remainder of the right atrium" [MP:0010495]
synonym: "crista terminalis atrii dextri" EXACT [FMA:9236, FMA:TA]
synonym: "crista terminalis cordis" EXACT [FMA:9236]
synonym: "crista terminalis of right atrium" EXACT [FMA:9236]
xref: FMA:9236
xref: SCTID:277693004
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0005980
name: pectinate muscle
def: "the prominent ridges of atrial myocardium located on the inner surface of most of the right atrium and both the right and left auricular regions[MP]." [MP:0010496, Wikipedia:Musculi_pectinati]
synonym: "musculi pectinati" EXACT PLURAL [Wikipedia:Musculi_pectinati]
synonym: "musculi pectinati atrii dextri, musculi pectinati atrii sinistri" RELATED LATIN [Wikipedia:Musculi_pectinati]
synonym: "musculus pectinatus" EXACT [FMA:12226]
xref: FMA:12226
xref: http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png
xref: SCTID:277718001
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002302 ! myocardium of atrium
[Term]
id: UBERON:0005981
name: vena cava sinus
def: "the portion of the cavity of the right atrium of the heart that receives the blood from the vena cavae and is separated from the rest of the atrium by the crista terminalis" [MP:0010497]
synonym: "cavity of inflow part of right atrium" EXACT [FMA:13246]
synonym: "posterior right atrial cavity" EXACT [FMA:13246]
synonym: "sinus venarum cavarum" EXACT [FMA:13246]
xref: FMA:13246
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0005982
name: Bachmann's bundle
def: "the impulse conduction tract that originates in the sinoatrial node and transmits signal to the left atrium" [MP:0010517, Wikipedia:Bachmann's_bundle]
synonym: "anterior interatrial band" EXACT [UBERON:gg]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/0/05/ConductionsystemoftheheartwithouttheHeart.png/350px-ConductionsystemoftheheartwithouttheHeart.png
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002350 {source="MP"} ! conducting system of heart
[Term]
id: UBERON:0005983
name: heart layer
def: "the laminar structure of the heart" [MP:0010545]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0000948
intersection_of: UBERON:0004923 ! organ component layer
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0005984
name: subendocardium layer
def: "the layer of loose fibrous tissue located between the endocardium and myocardium which contains the nerves and the impulse-conducting system (Purkinje fibers) of the heart" [MP:0010546]
is_a: UBERON:0005983 ! heart layer
[Term]
id: UBERON:0005985
name: coronary vessel
def: "any of the arteries or veins that supply blood to the heart or return blood from the heart muscles to the circulation" [MP:0010551]
comment: TODO - change relation from part_of
xref: MESH:A.07.231.114.269
is_a: UBERON:0000055 ! vessel
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948
intersection_of: UBERON:0000055 ! vessel
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0005986
name: left branch of atrioventricular bundle
def: "Subdivision of conducting system of heart which enters the septal myocardium of left ventricle and is continuous with the anterior, septal and posterior divisions of the left branch of the atrioventricular bundle[FMA]. the left branch of the atrioventricular bundle that separates at the bundle of His, descends the septal wall of the left ventricle and connects to the terminal Purkinje fiber[MP]." [FMA:9487, MP:0010566]
synonym: "crus sinistrum (fasciculi atrioventricularis)" EXACT [FMA:9487]
synonym: "left bundle branch" EXACT [MP:0010566]
synonym: "left bundle branch of bundle of His" EXACT [HP:0005172]
synonym: "left bundle of atrioventricular bundle" EXACT [MP:0010566]
synonym: "left crus of atrioventricular bundle" EXACT [MP:0010566]
synonym: "left posterior branch" EXACT [MP:0010566]
synonym: "left posterior bundle" EXACT [MP:0010566]
xref: FMA:9487
xref: galen:LeftBundleBranch
xref: SCTID:277690001
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: in_left_side_of UBERON:0002353 ! atrioventricular bundle
relationship: part_of UBERON:0002350 {source="FMA"} ! conducting system of heart
[Term]
id: UBERON:0005987
name: right branch of atrioventricular bundle
def: "Subdivision of conducting system of heart which enters the septal myocardium of right ventricle to reach the anterior papillary muscle and then subendocardially to the apex of the heart[FMA]. the right branch of the atrioventricular bundle that separates just below the bundle of His, descends the septal wall of the right ventricle and connects to the terminal Purkinje fibers[MP]." [FMA:9486, MP:0010567]
synonym: "crus dextrum (fasciculi atrioventricularis)" EXACT [FMA:9486]
synonym: "right bundle" EXACT [FMA:9486, MP:0010567]
synonym: "right bundle branch" EXACT [FMA:9486]
synonym: "right bundle branch of bundle of His" EXACT []
synonym: "right right crus of atrioventricular bundle" EXACT [MP:0010567]
synonym: "right ventricular bundle" EXACT [MP:0010567]
xref: FMA:9486
xref: galen:RightBundleBranch
xref: SCTID:277689005
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: in_right_side_of UBERON:0002353 ! atrioventricular bundle
relationship: part_of UBERON:0002350 {source="FMA"} ! conducting system of heart
[Term]
id: UBERON:0005988
name: atrium myocardial trabecula
def: "the supporting bundles of muscular fibers lining the walls of the atria" [MP:0010581]
synonym: "atrial trabecula" EXACT []
synonym: "atrium myocardial trabeculae" EXACT PLURAL [MP:0010581]
synonym: "trabecula of atrium" EXACT []
is_a: UBERON:0000440 ! trabecula
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002302 ! myocardium of atrium
[Term]
id: UBERON:0005989
name: atrioventricular septum
def: "the wall of the heart that separates the right atrium and left ventricle; and is located just above the septal cusp of the tricuspid valve" [MP:0010592]
synonym: "membranous atrioventricular septum" EXACT [FMA:7136]
xref: FMA:7136
xref: SCTID:280151006
is_a: UBERON:0002099 ! cardiac septum
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: adjacent_to UBERON:0002078
relationship: adjacent_to UBERON:0002084
intersection_of: UBERON:0002099 ! cardiac septum
intersection_of: adjacent_to UBERON:0002078 ! right atrium
intersection_of: adjacent_to UBERON:0002084 ! heart left ventricle
relationship: adjacent_to UBERON:0002078 ! right atrium
relationship: adjacent_to UBERON:0002084 ! heart left ventricle
relationship: develops_from UBERON:0002062 {source="PMID:15797462", source="Wikipedia"} ! endocardial cushion
[Term]
id: UBERON:0005990
name: aortic valve cusp
def: "the three fibrous triangular components and associated flap of the aortic valve" [MP:0010595]
synonym: "aortic semilunar valvule" EXACT [FMA:7251]
synonym: "aortic valvular cusp" EXACT [FMA:7251]
synonym: "cusp of aortic valve" EXACT [FMA:7251]
synonym: "semilunar valvule of aortic valve" EXACT [FMA:7251]
xref: FMA:7251
xref: SCTID:362026005
is_a: UBERON:0006009 ! cusp of cardiac valve
relationship: part_of UBERON:0002137 ! aortic valve
[Term]
id: UBERON:0005991
name: aortic valve anulus
def: "the fibrous ring of the aortic valve that attaches the cusps of aortic valve to the wall of left ventricle, and which consists of portions of the fibrous scallops of the posterior, right anterior and left anterior cusps" [MP:0010598]
synonym: "anulus of aortic valve" EXACT [FMA:9502]
synonym: "aortic anulus" EXACT [FMA:9502]
synonym: "aortic valvar anulus" EXACT [FMA:9502]
synonym: "fibrous ring of aortic valve" EXACT [FMA:9502]
xref: FMA:9502
is_a: UBERON:0006008 ! fibrous ring of heart
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002137 ! aortic valve
[Term]
id: UBERON:0005992
name: pulmonary valve cusp
def: "the three fibrous triangular components and associated flap of the pulmonary valve" [MP:0010602]
synonym: "cusp of pulmonary valve" EXACT [FMA:7248]
synonym: "pulmonary semilunar valvule" EXACT [FMA:7248]
synonym: "pulmonary valvular cusp" EXACT [FMA:7248]
synonym: "semilunar cusp of pulmonary valve" EXACT [FMA:7248]
synonym: "semilunar valvule of pulmonary valve" EXACT [FMA:7248]
xref: FMA:7248
is_a: UBERON:0006009 ! cusp of cardiac valve
relationship: part_of UBERON:0002146 ! pulmonary valve
[Term]
id: UBERON:0005993
name: pulmonary valve anulus
def: "the fibrous ring of the pulmonary valve that attaches the cusps of pulmonary valve to the wall of right ventricle, and which consists of portions of the fibrous scallops of the anterior, right posterior and left posterior cusps" [MP:0010606]
synonym: "anulus of pulmonary valve" EXACT [FMA:9503]
synonym: "fibrous ring of pulmonary valve" EXACT [FMA:9503]
synonym: "pulmonary anulus" EXACT [FMA:9503]
synonym: "pulmonary valvar anulus" EXACT [FMA:9503]
xref: FMA:9503
is_a: UBERON:0006008 ! fibrous ring of heart
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002146 ! pulmonary valve
[Term]
id: UBERON:0005994
name: chordae tendineae
def: "the tendinous strands that connect the papillary muscles on the wall of the ventricles to the leaflets of the atrioventricular valves; the chordae tendineae serve to prevent the AV valves from prolapsing back into the atria" [MP:0010608, Wikipedia:Chordae_tendineae]
synonym: "chorda tendinea" EXACT [FMA:12225]
synonym: "chordae tendineae cordis" RELATED LATIN [Wikipedia:Chordae_tendineae]
xref: FMA:12225
xref: GAID:564
xref: http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png
xref: MESH:A.07.541.510.240
xref: ncithesaurus:Chordae_Tendineae
xref: SCTID:279330004
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002133 ! atrioventricular valve
[Term]
id: UBERON:0005995
name: mitral valve anulus
def: "the fibrous ring of the mitral valve that attaches the cusps of mitral valve to the heart, and which consists of portions of the fibrous scallops of the anterior and posterior cusps" [MP:0010613]
synonym: "anulus of mitral valve" EXACT [FMA:9498]
synonym: "fibrous ring of mitral valve" EXACT [FMA:9498]
synonym: "mitral anulus" EXACT [FMA:9498]
synonym: "mitral valvar anulus" EXACT [FMA:9498]
xref: FMA:9498
is_a: UBERON:0006008 ! fibrous ring of heart
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002135 ! mitral valve
[Term]
id: UBERON:0005996
name: mitral valve cusp
def: "the two fibrous components and associated flaps of the mitral valve" [MP:0010614]
comment: TODO - add generic parent
is_a: UBERON:0006009 ! cusp of cardiac valve
relationship: part_of UBERON:0002135 ! mitral valve
[Term]
id: UBERON:0005997
name: tricuspid valve anulus
def: "the fibrous ring of the tricuspid valve that attaches the cusps of tricuspid valve to the heart, and which consists of portions of the fibrous scallops of the anterior cusp (infundibular cusp), the posterior cusp (marginal cusp), and the septal cusp (medial cusp)" [MP:0010621]
synonym: "anulus of tricuspid valve" EXACT [FMA:9500]
synonym: "fibrous ring of tricuspid valve" EXACT [FMA:9500]
synonym: "tricuspid anulus" EXACT [FMA:9500]
synonym: "tricuspid valvar anulus" EXACT [FMA:9500]
xref: FMA:9500
is_a: UBERON:0006008 ! fibrous ring of heart
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002134 ! tricuspid valve
[Term]
id: UBERON:0005998
name: tricuspid valve cusp
def: "the three fibrous triangular components and associated flaps of the tricuspid valve" [MP:0010622]
comment: TODO - check
synonym: "cuspis septalis valvae atrioventricularis dextrae" EXACT [FMA:7240, FMA:TA]
synonym: "septal cusp of right atrioventricular valve" EXACT [FMA:7240]
synonym: "septal cusp of tricuspid valve" EXACT [FMA:7240]
synonym: "septal leaflet of tricuspid valve" EXACT [FMA:7240]
synonym: "septal tricuspid leaflet" EXACT [FMA:7240]
xref: FMA:7240
xref: SCTID:261417002
is_a: UBERON:0005484 ! tricuspid valve leaflet
is_a: UBERON:0006009 ! cusp of cardiac valve
relationship: part_of UBERON:0002134 ! tricuspid valve
[Term]
id: UBERON:0005999
name: aorticopulmonary septum
def: "the spiral septum that separates the truncus arteriosus into a ventral pulmonary trunk and the dorsal aorta" [MP:0010650]
is_a: UBERON:0002099 ! cardiac septum
relationship: adjacent_to UBERON:0002333
relationship: adjacent_to UBERON:0005805
intersection_of: UBERON:0002099 ! cardiac septum
intersection_of: adjacent_to UBERON:0002333 ! pulmonary trunk
intersection_of: adjacent_to UBERON:0005805 ! dorsal aorta
relationship: adjacent_to UBERON:0002333 ! pulmonary trunk
relationship: adjacent_to UBERON:0005805 ! dorsal aorta
[Term]
id: UBERON:0006001
name: intersomitic artery
def: "the small branching sprouts of the dorsal aorta that grow across the medial surface of the somite, turn right angles to grow over that surface and then fuse with other sprouts and form the vertebral arteries adjacent to the neural tube; the intersomitic arteries supply the body wall and persist in the adult as the posterior intercostal, subcostal and the lumbar arteries" [MP:0010662]
xref: XAO:0004165
is_a: UBERON:0003513 ! trunk blood vessel
is_a: UBERON:0004573 ! systemic artery
relationship: part_of UBERON:0005805 ! dorsal aorta
[Term]
id: UBERON:0006002
name: vitelline artery
def: "the paired arteries that carry blood to the yolk sac / gut tube from the dorsal aorta; the vitelline arteries give rise to the celiac artery, superior mesenteric artery, and inferior mesenteric artery in the adult" [MP:0010664, Wikipedia:Vitelline_arteries]
xref: EHDAA2:0002208
xref: EMAPA:16207
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png
is_a: UBERON:0001637 ! artery
relationship: continuous_with UBERON:0001040
relationship: continuous_with UBERON:0005805
intersection_of: UBERON:0001637 ! artery
intersection_of: continuous_with UBERON:0001040 ! yolk sac
intersection_of: continuous_with UBERON:0005805 ! dorsal aorta
relationship: continuous_with UBERON:0001040 ! yolk sac
relationship: continuous_with UBERON:0005805 ! dorsal aorta
[Term]
id: UBERON:0006003
name: skin adnexa
def: "the tissue or structures associated with or embedded in the skin such as hair and hair follicles, sweat glands, sebaceous glands and claws or nails" [http://code.google.com/p/caro2/issues/detail?id=5, MP:0010678, Wikipedia:Skin_appendage]
comment: editor note - add subclasses based on resolution of CARO tracker item. Also check: adnexal gland
synonym: "adnexae cutis" RELATED LATIN [Wikipedia:Skin_appendage]
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002416 ! integumental system
[Term]
id: UBERON:0006004
name: hair follicle matrix region
def: "the bulb region adjacent to the dermal papilla that contains rapidly proliferating matrix cells that give rise to the various cell lineages of the hair shaft and inner root sheath" [MP:0010686]
synonym: "germinal matrix of hair bulb" EXACT [FMA:70772]
synonym: "lower part of bulb of hair follicle" EXACT [FMA:70772]
synonym: "lower zone of bulb of hair follicle" EXACT [FMA:70772]
xref: FMA:70772
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0005932 ! bulb of hair follicle
[Term]
id: UBERON:0006005
name: hair follicle isthmus
def: "the middle part of the hair follicle that extends from the sebaceous duct to the bulge" [MP:0010694]
synonym: "isthmus of hair follicle" EXACT [FMA:70723]
xref: FMA:70723
xref: ncithesaurus:Hair_Follicle_Isthmus
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0006006
name: metoptic pilar
def: "posterior border of the optic nerve foramen." [MP:0010705]
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0005745 ! optic canal
[Term]
id: UBERON:0006007
name: pre-Botzinger complex
def: "the group of interneurons within the medulla oblongata's ventral respiratory group that are important for the generation of ventilatory (inspiratory) rhythmogenesis[MP]. The Pre-Bötzinger Complex (preBötC) is a cluster of interneurons in the ventrolateral medulla of the brainstem, which is essential to the generation of respiratory rhythm in mammals[WP]." [MP:0010745, Wikipedia:Pre-botzinger_complex]
comment: the MP class implies this is part of both the medulla oblongata and the PSNS, which violates the spatial disjointness constraint. We weaken this to continuous_with here.
synonym: "Pre-Bötzinger Complex" EXACT [Wikipedia:Pre-botzinger_complex]
synonym: "preBötC" EXACT [Wikipedia:Pre-botzinger_complex]
xref: MA:0002577
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: continuous_with UBERON:0000011 ! parasympathetic nervous system
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0006008
name: fibrous ring of heart
def: "The right and left fibrous rings of heart (anulus fibrosus cordis) surround the atrioventricular and arterial orifices, and are stronger upon the left than on the right side of the heart. The right fibrous ring is known as the anulus fibrosus dexter cordis, and the left is known as the anulus fibrosus sinister cordis. The atrioventricular rings serve for the attachment of the muscular fibers of the atria and ventricles, and for the attachment of the bicuspid and tricuspid valves. The left atrioventricular ring is closely connected, by its right margin, with the aortic arterial ring; between these and the right atrioventricular ring is a triangular mass of fibrous tissue, the trigonum fibrosum, which represents the os cordis seen in the heart of some of the larger animals, as the ox and elephant. Lastly, there is the tendinous band, already referred to, the posterior surface of the conus arteriosus. The fibrous rings surrounding the arterial orifices serve for the attachment of the great vessels and semilunar valves, they are known as The aortic annulus. Each ring receives, by its ventricular margin, the attachment of some of the muscular fibers of the ventricles; its opposite margin presents three deep semicircular notches, to which the middle coat of the artery is firmly fixed. The attachment of the artery to its fibrous ring is strengthened by the external coat and serous membrane externally, and by the endocardium internally. From the margins of the semicircular notches the fibrous structure of the ring is continued into the segments of the valves. The middle coat of the artery in this situation is thin, and the vessel is dilated to form the sinuses of the aorta and pulmonary artery." [Wikipedia:Fibrous_rings_of_heart]
synonym: "annulus fibrosus cordis" RELATED [Wikipedia:Fibrous_rings_of_heart]
synonym: "anulus fibrosus cordis" RELATED [Wikipedia:Fibrous_rings_of_heart]
synonym: "anulus fibrosus of heart" EXACT [FMA:9497]
synonym: "aortic annulus" RELATED [Wikipedia:Fibrous_rings_of_heart]
synonym: "coronary tendon" RELATED [BTO:0003628]
synonym: "fibrous ring of heart" RELATED [Wikipedia:Fibrous_rings_of_heart]
synonym: "Lower's ring" RELATED [BTO:0003628]
xref: BTO:0003628
xref: FMA:9497
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006444 ! annulus fibrosus
relationship: part_of UBERON:0000948
intersection_of: UBERON:0006444 ! annulus fibrosus
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0006009
name: cusp of cardiac valve
def: "Organ component which has as its parts the cusp proper, lunule and nodule of semilunar valvule[FMA]. The cusps of the heart valves serve to seal the heart valves when closed. There are three cusps for each valve except for the mitral valve, which has only two (hence its alternate name, \"bicuspid valve\"). \"Nodules\" are located at the tip of the valve, to form a tighter seal[WP]." [FMA:7232, Wikipedia:Cusps_of_heart_valves]
synonym: "cardiac valve cusp" EXACT [FMA:7232]
synonym: "cardiac valvular cusp" EXACT [FMA:7232]
synonym: "cardiac valvule" EXACT [FMA:7232]
synonym: "cardial valve cusp" EXACT []
synonym: "semilunar valvule" EXACT [FMA:7232]
xref: FMA:7232
xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png
xref: ncithesaurus:Cardiac_Valve_Cusp
xref: SCTID:30822008
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000946 ! cardial valve
[Term]
id: UBERON:0006010
name: hyaloid canal
def: "Hyaloid canal is a small transparent canal running through the vitreous body from the optical nerve disc to the lens; in foetus it contains a prolongation of the central artery of the retina, the hyaloid artery. Other names: Cloquet's canal, Stilling's canal. The function of the canal is to provide an adjustable reservoir of mobile liquid which may be easily and rapidly displaced backwards in positive accommodation, forwards in negative accommodation[WP]. a passage running from in front of the optic disk to the lens of the eye; in the fetus, it transmits the hyaloid artery[TFD]." [http://medical-dictionary.thefreedictionary.com/Hyaloid+canal, Wikipedia:Hyaloid_canal]
comment: in FMA, this is_a FMA:67388 portion of vitreous humor
synonym: "canal of cloquet" EXACT [FMA:58837]
synonym: "cloquet's canal" EXACT [FMA:58837]
synonym: "stilling's canal" EXACT [FMA:58837]
xref: FMA:58837
xref: http://upload.wikimedia.org/wikipedia/commons/e/eb/Gray869.png
xref: SCTID:362506002
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001798 ! vitreous body
[Term]
id: UBERON:0006011
name: hyaloid vein
def: "Vein internal to the eye." [ZFIN:ZDB-PUB-010205-5]
synonym: "hyaloid veins" EXACT PLURAL [ZFA:0005047]
xref: TAO:0005047
xref: XAO:0004156
xref: ZFA:0005047
property_value: UBPROP:0000001 "Vein internal to the eye. Isogai et al. 2001.[TAO]" xsd:string
is_a: UBERON:0001638 ! vein
is_a: UBERON:0005492 ! hyaloid vessel
[Term]
id: UBERON:0006012
name: interdigital region
synonym: "interdigit" RELATED []
synonym: "interdigit region" EXACT []
xref: BTO:0004670
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010858 ! inter limb-segment region
relationship: connected_to UBERON:0002544 {cardinality="2"} ! digit
relationship: part_of UBERON:0002470 ! autopod region
[Term]
id: UBERON:0006013
name: hand interdigital region
synonym: "hand interdigit region" EXACT [MA:0000627]
xref: MA:0000627
xref: VHOG:0000991
is_a: UBERON:0006012 ! interdigital region
relationship: part_of UBERON:0002398
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: part_of UBERON:0002398 ! hand
relationship: adjacent_to UBERON:0002389 {cardinality="2"} ! hand digit
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0006014
name: foot interdigital region
synonym: "foot interdigit region" EXACT [MA:0000651]
xref: MA:0000651
xref: VHOG:0000992
is_a: UBERON:0006012 ! interdigital region
relationship: part_of UBERON:0002387
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: part_of UBERON:0002387 ! foot
relationship: adjacent_to UBERON:0001466 {cardinality="2"} ! foot digit
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0006015
name: webbed interdigital region
def: "Interdigital webbing is the presence of membranes of skin between the digits. Normally in mammals, webbing is present in the embryo but resorbed later in development, but in various mammal species it occasionally persists in adulthood.[1] In humans, it can be found in those suffering from LEOPARD syndrome and from Aarskog-Scott syndrome. Webbing between the digits of the hindfoot is also present in several mammals that spend part of their time in the water.[3] Webbing accommodates movement in the water[WP]." [Wikipedia:Interdigital_webbing]
synonym: "interdigital webbing" EXACT []
synonym: "syndactylous interdigital region" EXACT []
synonym: "web" BROAD []
is_a: UBERON:0006012 ! interdigital region
relationship: part_of UBERON:0008440 ! webbed autpod
[Term]
id: UBERON:0006016
name: interdigital region between digits 1 and 2
is_a: UBERON:0006012 ! interdigital region
relationship: adjacent_to UBERON:0006048
relationship: adjacent_to UBERON:0006049
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0006048 ! digit 1
intersection_of: adjacent_to UBERON:0006049 ! digit 2
relationship: adjacent_to UBERON:0006048 ! digit 1
relationship: adjacent_to UBERON:0006049 ! digit 2
relationship: part_of UBERON:0002470 ! autopod region
[Term]
id: UBERON:0006019
name: interdigital region between digits 2 and 3
is_a: UBERON:0006012 ! interdigital region
relationship: adjacent_to UBERON:0006049
relationship: adjacent_to UBERON:0006050
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0006049 ! digit 2
intersection_of: adjacent_to UBERON:0006050 ! digit 3
relationship: adjacent_to UBERON:0006049 ! digit 2
relationship: adjacent_to UBERON:0006050 ! digit 3
relationship: part_of UBERON:0002470 ! autopod region
[Term]
id: UBERON:0006022
name: interdigital region between digits 3 and 4
is_a: UBERON:0006012 ! interdigital region
relationship: adjacent_to UBERON:0006050
relationship: adjacent_to UBERON:0006051
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0006050 ! digit 3
intersection_of: adjacent_to UBERON:0006051 ! digit 4
relationship: adjacent_to UBERON:0006050 ! digit 3
relationship: adjacent_to UBERON:0006051 ! digit 4
relationship: part_of UBERON:0002470 ! autopod region
[Term]
id: UBERON:0006025
name: interdigital region between digits 4 and 5
is_a: UBERON:0006012 ! interdigital region
relationship: adjacent_to UBERON:0006051
relationship: adjacent_to UBERON:0006052
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0006051 ! digit 4
intersection_of: adjacent_to UBERON:0006052 ! digit 5
relationship: adjacent_to UBERON:0006051 ! digit 4
relationship: adjacent_to UBERON:0006052 ! digit 5
relationship: part_of UBERON:0002470 ! autopod region
[Term]
id: UBERON:0006026
name: interdigital region between fingers 1 and 2
xref: EHDAA2:0000844
xref: EHDAA:6298
xref: EMAPA:17445
is_a: UBERON:0006013 ! hand interdigital region
is_a: UBERON:0006016 ! interdigital region between digits 1 and 2
relationship: adjacent_to UBERON:0001463
relationship: adjacent_to UBERON:0003622
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0001463 ! hand digit 1
intersection_of: adjacent_to UBERON:0003622 ! hand digit 2
relationship: adjacent_to UBERON:0001463 ! hand digit 1
relationship: adjacent_to UBERON:0003622 ! hand digit 2
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0006029
name: interdigital region between fingers 2 and 3
xref: EHDAA2:0000847
xref: EHDAA:6304
xref: EMAPA:17448
is_a: UBERON:0006013 ! hand interdigital region
is_a: UBERON:0006019 ! interdigital region between digits 2 and 3
relationship: adjacent_to UBERON:0003622
relationship: adjacent_to UBERON:0003623
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0003622 ! hand digit 2
intersection_of: adjacent_to UBERON:0003623 ! hand digit 3
relationship: adjacent_to UBERON:0003622 ! hand digit 2
relationship: adjacent_to UBERON:0003623 ! hand digit 3
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0006032
name: interdigital region between fingers 3 and 4
xref: EHDAA2:0000850
xref: EHDAA:6310
xref: EMAPA:17451
is_a: UBERON:0006013 ! hand interdigital region
is_a: UBERON:0006022 ! interdigital region between digits 3 and 4
relationship: adjacent_to UBERON:0003623
relationship: adjacent_to UBERON:0003624
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0003623 ! hand digit 3
intersection_of: adjacent_to UBERON:0003624 ! hand digit 4
relationship: adjacent_to UBERON:0003623 ! hand digit 3
relationship: adjacent_to UBERON:0003624 ! hand digit 4
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0006035
name: interdigital region between fingers 4 and 5
xref: EHDAA2:0000853
xref: EHDAA:6316
xref: EMAPA:17454
is_a: UBERON:0006013 ! hand interdigital region
is_a: UBERON:0006025 ! interdigital region between digits 4 and 5
relationship: adjacent_to UBERON:0003624
relationship: adjacent_to UBERON:0003625
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0003624 ! hand digit 4
intersection_of: adjacent_to UBERON:0003625 ! hand digit 5
relationship: adjacent_to UBERON:0003624 ! hand digit 4
relationship: adjacent_to UBERON:0003625 ! hand digit 5
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0006038
name: interdigital region between toes 1 and 2
xref: EHDAA2:0000856
xref: EHDAA:6148
xref: EMAPA:17476
is_a: UBERON:0006014 ! foot interdigital region
is_a: UBERON:0006016 ! interdigital region between digits 1 and 2
relationship: adjacent_to UBERON:0003631
relationship: adjacent_to UBERON:0003632
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0003631 ! foot digit 1
intersection_of: adjacent_to UBERON:0003632 ! foot digit 2
relationship: adjacent_to UBERON:0003631 ! foot digit 1
relationship: adjacent_to UBERON:0003632 ! foot digit 2
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0006041
name: interdigital region between toes 2 and 3
xref: EHDAA2:0000859
xref: EHDAA:6154
xref: EMAPA:17479
is_a: UBERON:0006014 ! foot interdigital region
is_a: UBERON:0006019 ! interdigital region between digits 2 and 3
relationship: adjacent_to UBERON:0003632
relationship: adjacent_to UBERON:0003633
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0003632 ! foot digit 2
intersection_of: adjacent_to UBERON:0003633 ! foot digit 3
relationship: adjacent_to UBERON:0003632 ! foot digit 2
relationship: adjacent_to UBERON:0003633 ! foot digit 3
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0006044
name: interdigital region between toes 3 and 4
xref: EHDAA2:0000862
xref: EHDAA:6160
xref: EMAPA:17482
is_a: UBERON:0006014 ! foot interdigital region
is_a: UBERON:0006022 ! interdigital region between digits 3 and 4
relationship: adjacent_to UBERON:0003633
relationship: adjacent_to UBERON:0003634
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0003633 ! foot digit 3
intersection_of: adjacent_to UBERON:0003634 ! foot digit 4
relationship: adjacent_to UBERON:0003633 ! foot digit 3
relationship: adjacent_to UBERON:0003634 ! foot digit 4
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0006047
name: interdigital region between toes 4 and 5
xref: EHDAA2:0000865
xref: EHDAA:6166
xref: EMAPA:17485
is_a: UBERON:0006014 ! foot interdigital region
is_a: UBERON:0006025 ! interdigital region between digits 4 and 5
relationship: adjacent_to UBERON:0003634
relationship: adjacent_to UBERON:0003635
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0003634 ! foot digit 4
intersection_of: adjacent_to UBERON:0003635 ! foot digit 5
relationship: adjacent_to UBERON:0003634 ! foot digit 4
relationship: adjacent_to UBERON:0003635 ! foot digit 5
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0006048
name: digit 1
property_value: "ray_number" "1" xsd:nonNegativeInteger
is_a: UBERON:0002544 ! digit
[Term]
id: UBERON:0006049
name: digit 2
property_value: "ray_number" "2" xsd:nonNegativeInteger
is_a: UBERON:0002544 ! digit
[Term]
id: UBERON:0006050
name: digit 3
property_value: "ray_number" "3" xsd:nonNegativeInteger
is_a: UBERON:0002544 ! digit
[Term]
id: UBERON:0006051
name: digit 4
property_value: "ray_number" "4" xsd:nonNegativeInteger
is_a: UBERON:0002544 ! digit
[Term]
id: UBERON:0006052
name: digit 5
property_value: "ray_number" "5" xsd:nonNegativeInteger
is_a: UBERON:0002544 ! digit
[Term]
id: UBERON:0006054
name: surface of occiput
def: "The occiput is the anatomical term for the posterior (back) portion of the head." [Wikipedia:Occiput]
synonym: "occiput" RELATED [FMA:46479]
synonym: "occiput cranii" RELATED LATIN [Wikipedia:Occiput]
synonym: "occiput surface" EXACT [FMA:46479]
synonym: "regio occipitalis (capitis)" EXACT [FMA:46479]
xref: FMA:46479
xref: galen:Occiput
xref: http://upload.wikimedia.org/wikipedia/commons/e/eb/Double_cowlick.jpg
is_a: UBERON:0006056 ! posterior surface of head
[Term]
id: UBERON:0006056
name: posterior surface of head
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0006057
name: multi-segment region
is_obsolete: true
[Term]
id: UBERON:0006058
name: multi-limb segment region
def: "A collection of two or more connected limb segments. Examples: arm (comprising stylopod and zeugopod regions)." [UBERON:cjm]
is_a: UBERON:0000477 ! anatomical cluster
relationship: has_part UBERON:0002529 ! limb segment
[Term]
id: UBERON:0006059
name: falx cerebri
def: "The falx cerebri, also known as the cerebral falx, so named from its sickle-like form, is a strong, arched fold of dura mater which descends vertically in the longitudinal fissure between the cerebral hemispheres. It is narrow in front, where it is attached to the crista galli of the ethmoid; and broad behind, where it is connected with the upper surface of the tentorium cerebelli. Its upper margin is convex, and attached to the inner surface of the skull in the middle line, as far back as the internal occipital protuberance; it contains the superior sagittal sinus. Its lower margin is free and concave, and contains the inferior sagittal sinus. The falx cerebri is known to calcify with age." [Wikipedia:Falx_cerebri]
synonym: "cerebral falx" EXACT [FMA:83967]
xref: EMAPA:18551
xref: FMA:83967
xref: http://upload.wikimedia.org/wikipedia/commons/f/ff/Falxcerebri.jpg
xref: ncithesaurus:Falx_Cerebri
xref: SCTID:279275004
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0010090 {evidence="definitional"} ! future falx cerebri
relationship: part_of UBERON:0002363 ! dura mater
[Term]
id: UBERON:0006060
name: conotruncus
def: "The distal portion of Bulbus cordis that forms an outflow channel and gives rise to the proximal conus cordis." [UBERON:gg]
synonym: "bulbus cordis rostral half" EXACT [VHOG:0000437]
synonym: "rostral half of bulbus cordis" EXACT [EMAPA:16221]
xref: EMAPA:16221
xref: EMAPA:16338
xref: VHOG:0000437
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0004706 ! bulbus cordis
[Term]
id: UBERON:0006061
name: process of vertebra
def: "A process projection from a part of the vertebra such as centrum or arches. Examples: transverse process, diapophyses, parapophyses, and zygapophyses (both the cranial zygapophyses and the caudal zygapophyses)." [Wikipedia:Vertebral_column#Structure_of_individual_vertebrae]
synonym: "vertebra process" EXACT []
synonym: "vertebral process" EXACT [FMA:24530]
xref: FMA:24530
is_a: UBERON:0004529 ! anatomical projection
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0006062
name: articular process of vertebra
def: "Paired processes at the cephalic and caudal ends of the neural arch. They function as interlocking structures between adjacent vertebrae, and limit dorsoventral flexion and lateral movement of the column in the trunk region[AAO]. The articular processes or zygapophyses of a vertebra, in human anatomy contain two superior and two inferior, spring from the junctions of the pedicles and laminae. These stick out of an end of a vertebra to lock with a zygapophysis on the next vertebra, to make the backbone more stable. The superior processes project upward from a lower vertebra, and their articular surfaces are directed more or less backward. The inferior processes project downward from a higher vertebra, and their articular surfaces are directed more or less forward and outward. The articular surfaces are coated with hyaline cartilage." [AAO:Pugener_and_Maglia_2008, Wikipedia:Articular_processes]
comment: todo - class as endochondral bone, check species
subset: vertebrate_core
synonym: "articular process" BROAD [Wikipedia:Articular_processes]
synonym: "p. articularis inferior vertebrae, p. articularis superior vertebrae," RELATED LATIN [Wikipedia:Articular_processes]
synonym: "processus articularis (zygapophysis)" EXACT [FMA:11952]
synonym: "zygapophysis" EXACT [Wikipedia:Articular_processes]
xref: AAO:0000710
xref: FMA:11952
xref: http://upload.wikimedia.org/wikipedia/commons/3/3e/Processusarticularissuperiorvertebrae.png
xref: SCTID:317570004
xref: TAO:0001549
xref: ZFA:0001603
property_value: UBPROP:0000001 "Paired processes at the cephalic and caudal ends of the neural arch. They function as interlocking structures between adjacent vertebrae, and limit dorsoventral flexion and lateral movement of the column in the trunk region.[AAO]" xsd:string
is_a: UBERON:0006061 ! process of vertebra
[Term]
id: UBERON:0006063
name: cartilaginous neural arch
def: "One of the cartilaginous structures surrounding the embryonic spinal cord, formed by the dorsal growth of the dorsolateral arcualia; it is the primordium of the vertebral arch." [BTO:0001763]
xref: BTO:0001763
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010358 ! arch of centrum of vertebra
relationship: has_part UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006065
name: hemal arch
def: "Bony canal attached to the ventral surface or the vertebral centrum that encloses and protects the caudal artery and vein ventrally. The arch consists of right and left halves, which are fused ventrally to give a V- or Y-shape to the ventral aspect of the vertebra[AAO]. Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone[ZFA]." [AAO:0000726, Wikipedia:Haemal_arch, ZFIN:curator]
comment: Taxon notes: fish, most reptiles, some birds, and some mammals with long tails.[WP]
synonym: "haemal arch" EXACT [AAO:0000726, ZFA:0000519]
synonym: "ventral arch" RELATED [AAO:0000726]
synonym: "ventral arcocentrum" EXACT [ZFA:0000519]
xref: AAO:0000726
xref: TAO:0000519
xref: ZFA:0000519
property_value: UBPROP:0000001 "Bony canal attached to the ventral surface or the vertebral centrum that encloses and protects the caudal artery and vein ventrally. The arch consists of right and left halves, which are fused ventrally to give a V- or Y-shape to the ventral aspect of the vertebra.[AAO]" xsd:string
property_value: UBPROP:0000001 "Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from basiventral (TAO:0001361)[TAO]" xsd:string
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0010358 ! arch of centrum of vertebra
relationship: part_of UBERON:0001095 ! caudal vertebra
[Term]
id: UBERON:0006067
name: musculature of hindlimb zeugopod
synonym: "leg musculature" EXACT [FMA:50211]
synonym: "muscle group of leg" EXACT [FMA:50211]
synonym: "set of muscles of leg" EXACT [FMA:50211]
xref: FMA:50211
is_a: UBERON:0004466 ! musculature of leg
relationship: part_of UBERON:0003823
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0006068
name: bone of tail
synonym: "tail bone" EXACT [MA:0000696]
xref: MA:0000696
is_a: UBERON:0001474 ! bone
relationship: part_of UBERON:0007812
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0007812 ! post-anal tail
relationship: part_of UBERON:0007812 ! post-anal tail
[Term]
id: UBERON:0006070
name: coccygeal vertebra
def: "A caudal vertebra that is part of a coccyx." [UBERON:cjm]
comment: AO notes: we assume the MA class represents a subtype of caudal vertebra in what corresponds to the coccyx in humans
synonym: "caudal vertebra" BROAD SENSU [FMA:12527]
synonym: "coccygea" RELATED [MA:0001420]
synonym: "coccygeal segment" EXACT []
synonym: "fused tail vertebra" EXACT [UBERON:cjm]
xref: FMA:12527
xref: galen:CoccygealVertebra
xref: MA:0001420
xref: ncithesaurus:Coccygeal_Vertebra
xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA
xref: SCTID:361774004
is_a: UBERON:0001095 {source="MA"} ! caudal vertebra
relationship: part_of UBERON:0001350
intersection_of: UBERON:0001095 ! caudal vertebra
intersection_of: part_of UBERON:0001350 ! coccyx
relationship: part_of UBERON:0001350 ! coccyx
[Term]
id: UBERON:0006071
name: caudal region
comment: We follow XAO is distinguishing the tail region from the tail; the tail bud is part of the tail region; the tail starts after the tail bud
synonym: "postsacral region" RELATED [AAO:0000082]
synonym: "tail region" RELATED [AAO:0000082]
xref: XAO:0000087
is_a: UBERON:0011676 ! axial subdivision of organism
relationship: part_of UBERON:0000154 ! posterior region of body
[Term]
id: UBERON:0006072
name: cervical region of vertebral column
def: "That portion of the spine comprising the cervical vertebrae. The neck area of the spine." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
synonym: "cervical skeleton" EXACT [EHDAA2:0000238]
synonym: "cervical spinal column" EXACT [FMA:24138]
synonym: "cervical spine" EXACT [FMA:24138]
synonym: "cervical vertebral column" EXACT [FMA:24138]
xref: AAO:0000092
xref: BTO:0004148
xref: EHDAA2:0000238
xref: EHDAA:5051
xref: EMAPA:17215
xref: FMA:24138
xref: ncithesaurus:Cervical_Spine
xref: SCTID:260488005
property_value: UBPROP:0000001 "Anterior region of the vertebral column consisting of one to 19 or 20 vertebrae.[AAO]" xsd:string
is_a: UBERON:0006077 ! subdivision of vertebral column
relationship: subdivision_of UBERON:0005434
intersection_of: UBERON:0006077 ! subdivision of vertebral column
intersection_of: subdivision_of UBERON:0005434 ! cervical region
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0005434 ! cervical region
relationship: subdivision_of UBERON:0005434 ! cervical region
[Term]
id: UBERON:0006073
name: thoracic region of vertebral column
def: "That part of the spine comprising the thoracic vertebrae." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
synonym: "columna vertebralis thoracicus" EXACT [FMA:9140]
synonym: "thoracic skeleton" EXACT [EHDAA2:0002013]
synonym: "thoracic spine" EXACT [FMA:9140]
synonym: "thoracic vertebral column" EXACT [FMA:9140]
xref: AAO:0000612
xref: BTO:0004150
xref: EHDAA2:0002013
xref: EHDAA:5063
xref: EMAPA:17396
xref: FMA:9140
xref: ncithesaurus:Thoracic_Spine
xref: SCTID:243931006
property_value: UBPROP:0000001 "Region of the vertebral column between the atlas and the sacrum consisting of seven to 285 vertebrae.[AAO]" xsd:string
is_a: UBERON:0006077 ! subdivision of vertebral column
relationship: subdivision_of UBERON:0000915
intersection_of: UBERON:0006077 ! subdivision of vertebral column
intersection_of: subdivision_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0008231 {source="FMA"} ! dorsal thoracic segment of trunk
relationship: subdivision_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0006074
name: lumbar region of vertebral column
def: "Subdivision of vertebral column that corresponds to the lumbar subdivision of the body, containing the lumbar vertebrae." [UBERONREF:0000006]
synonym: "lumbar skeleton" EXACT [EHDAA2:0001037]
synonym: "lumbar spine" EXACT [BTO:0004147]
synonym: "lumbar vertebral column" EXACT [FMA:16203]
xref: BTO:0004147
xref: EHDAA2:0001037
xref: EHDAA:5055
xref: EMAPA:17393
xref: FMA:16203
xref: GAID:31
xref: ncithesaurus:Lumbar_Spine
xref: SCTID:243932004
is_a: UBERON:0006077 ! subdivision of vertebral column
relationship: subdivision_of UBERON:0005462
intersection_of: UBERON:0006077 ! subdivision of vertebral column
intersection_of: subdivision_of UBERON:0005462 ! lower back
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0005462 ! lower back
relationship: subdivision_of UBERON:0005462 ! lower back
[Term]
id: UBERON:0006075
name: sacral region of vertebral column
def: "Subdivision of vertebral column that corresponds to the sacral subdivision of the body, containing the sacral vertebrae or sacrum." [UBERONREF:0000006]
comment: In adult humans, the sacral skeleton is fused and called the sacrum
synonym: "sacral skeleton" EXACT [EHDAA2:0001772]
synonym: "sacrum" NARROW []
xref: AAO:0000724
xref: EHDAA2:0001772
xref: EHDAA:5059
xref: EMAPA:17676
xref: GAID:32
property_value: UBPROP:0000001 "Region of the vertebral column represented by one or two vertebrae.[AAO]" xsd:string
is_a: UBERON:0006077 ! subdivision of vertebral column
relationship: subdivision_of UBERON:0005473
intersection_of: UBERON:0006077 ! subdivision of vertebral column
intersection_of: subdivision_of UBERON:0005473 ! sacral region
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0005473 ! sacral region
relationship: subdivision_of UBERON:0005473 ! sacral region
[Term]
id: UBERON:0006076
name: caudal region of vertebral column
def: "Subdivision of vertebral column that corresponds to the sacral subdivision of the body, containing the caudal vertebrae." [UBERONREF:0000006]
comment: in AAO, this is posterior to the caudal-sacral region
synonym: "caudal region" RELATED [AAO:0000082]
synonym: "caudal skeleton" EXACT [UBERONREF:0000006]
synonym: "postsacral region" RELATED [AAO:0000082]
synonym: "tail region" RELATED [AAO:0000082]
xref: AAO:0000082
property_value: UBPROP:0000001 "Region of the vertebral column posterior to the caudal-sacral region, that may consists of two or three to more than 100 vertebrae. These vertebrae exhibit a gradual reduction in the sizes of their transverse processes and zygapophyses, but these structures are never entirely absent. All caudal vertebrae bear haemal arches.[AAO]" xsd:string
is_a: UBERON:0006077 ! subdivision of vertebral column
relationship: subdivision_of UBERON:0006071
intersection_of: UBERON:0006077 ! subdivision of vertebral column
intersection_of: subdivision_of UBERON:0006071 ! caudal region
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0006071 ! caudal region
relationship: subdivision_of UBERON:0006071 ! caudal region
[Term]
id: UBERON:0006077
name: subdivision of vertebral column
def: "A collection of all skeletal elements in some subdivision of the vertebral column." [UBERON:cjm]
synonym: "subdivision of vertebral skeleton" EXACT [UBERON:cjm]
synonym: "vertebral column subdivision" EXACT [FMA:16201]
xref: FMA:16201
is_a: UBERON:0000075 ! subdivision of skeletal system
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: subdivision_of UBERON:0001130
intersection_of: UBERON:0000075 ! subdivision of skeletal system
intersection_of: subdivision_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001137 {source="FMA"} ! dorsum
relationship: part_of UBERON:0005944 {source="FMA"} ! axial skeleton
relationship: subdivision_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0006078
name: subdivision of spinal cord lateral column
is_a: UBERON:0006080 ! segment of white matter of spinal cord
relationship: part_of UBERON:0005374 ! spinal cord lateral column
[Term]
id: UBERON:0006079
name: subdivision of spinal cord dorsal column
synonym: "segment of dorsal funiculus of spinal cord" RELATED [FMA:258190]
xref: FMA:258190
is_a: UBERON:0006080 ! segment of white matter of spinal cord
relationship: part_of UBERON:0005373 ! spinal cord dorsal column
[Term]
id: UBERON:0006080
name: segment of white matter of spinal cord
xref: FMA:258174
is_a: UBERON:0002318 ! white matter of spinal cord
[Term]
id: UBERON:0006081
name: fundus of gallbladder
def: "The fundus of gallbladder is the portion of the gallbladder which lies the farthest from the cystic duct. It is covered with peritoneum. A traditional cholecystectomy is most commonly performed from the infundibulum to the fundus. It's at the same level as the transpyloric plane." [Wikipedia:Fundus_of_gallbladder]
synonym: "fundus of the gallbladder" RELATED [Wikipedia:Fundus_of_gallbladder]
synonym: "fundus vesicae biliaris" RELATED LATIN [Wikipedia:Fundus_of_gallbladder]
synonym: "gallbladder fundus" EXACT [FMA:14536]
synonym: "gallbladder fundus" RELATED [Wikipedia:Fundus_of_gallbladder]
xref: FMA:14536
xref: http://upload.wikimedia.org/wikipedia/commons/4/44/Gray1095_parts.png
xref: ncithesaurus:Gallbladder_Fundus
xref: SCTID:245391004
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002110 ! gallbladder
[Term]
id: UBERON:0006082
name: fundus of urinary bladder
def: "The fundus of the urinary bladder is the base of the bladder, formed by the posterior wall. It is lymphatically drained by the external iliac lymph nodes. The peritoneum lies superior to the fundus[WP]." [Wikipedia:Fundus_of_the_urinary_bladder#Fundus]
synonym: "base of urinary bladder" EXACT [FMA:15908]
synonym: "fundus of bladder" BROAD [FMA:15908]
synonym: "fundus vesicae" EXACT [FMA:15908, FMA:TA]
synonym: "urinary bladder fundus" EXACT [FMA:15908]
synonym: "urinary bladder fundus region" EXACT [MA:0001694]
xref: EHDAA2:0000582
xref: EHDAA:9330
xref: EMAPA:18322
xref: FMA:15908
xref: MA:0001694
xref: ncithesaurus:Bladder_Fundus
xref: SCTID:362226002
xref: VHOG:0001184
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0006083
name: Perirhinal cortex
synonym: "Perirhinal area" EXACT [NIF_GrossAnatomy:nlx_anat_1005006]
synonym: "perirhinal cortex" EXACT [NIF_GrossAnatomy:nlx_anat_1005006]
xref: ABA:PERI
xref: BM:Tel-Cx-PRh
xref: BTO:0004355
xref: EFO:0001978
xref: MA:0000912
xref: NIF_GrossAnatomy:nlx_anat_1005006
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0002022 ! insula
[Term]
id: UBERON:0006086
name: stria medullaris
def: "." [NIF_GrossAnatomy:birnlex_1066]
synonym: "stria habenularis" EXACT [NIF_GrossAnatomy:birnlex_1066]
synonym: "stria medullaris (wenzel - wenzel)" EXACT [NIF_GrossAnatomy:birnlex_1066]
synonym: "stria medullaris of thalamus" EXACT [FMA:62080, NIF_GrossAnatomy:birnlex_1066]
synonym: "stria medullaris thalami" EXACT PLURAL [NIF_GrossAnatomy:birnlex_1066]
synonym: "stria medullaris thalamica" EXACT [NIF_GrossAnatomy:birnlex_1066]
xref: BM:Die-SM
xref: FMA:62080
xref: NIF_GrossAnatomy:birnlex_1066
xref: SCTID:362368004
is_a: UBERON:0002757 ! regional part of epithalamus
[Term]
id: UBERON:0006087
name: internal arcuate fiber bundle
synonym: "arcuate fibers medial lemniscus" EXACT [NIF_GrossAnatomy:birnlex_1091]
synonym: "fibrae arcuatae internae" EXACT [FMA:72629, FMA:TA]
synonym: "internal arcuate fibers" EXACT [NIF_GrossAnatomy:birnlex_1091]
synonym: "internal arcuate fibers" EXACT [FMA:72629]
synonym: "internal arcuate fibres" EXACT [FMA:72629]
synonym: "internal arcuate tract" EXACT [FMA:72629]
xref: FMA:72629
xref: NIF_GrossAnatomy:birnlex_1091
is_a: UBERON:0000122 ! neuron projection bundle
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011215 ! cell part cluster of neuraxis
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0006088
name: inferior parietal cortex
def: "Component of the parietal lobe. The inferior parietal cortex label includes the inferior parietal gyrus and the angular gyrus and lies inferior to the superior parietal gyrus. The rostral and caudal boundaries were the supramarginal gyrus and the parieto-occipital incisure respectively. The medial and lateral boundaries were the superior parietal gyrus and the middle temporal gyrus respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1194]
synonym: "inferior parietal cortex" EXACT [NIF_GrossAnatomy:birnlex_1194]
synonym: "inferior parietal lobule" EXACT [NIF_GrossAnatomy:birnlex_1194]
synonym: "inferior parietal lobule" EXACT [FMA:77536]
xref: EFO:0001951
xref: FMA:77536
xref: NIF_GrossAnatomy:birnlex_1194
xref: SCTID:362336007
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
[Term]
id: UBERON:0006089
name: dorsal external arcuate fiber bundle
synonym: "dorsal external arcuate fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_1250]
synonym: "dorsal external arcuate fibers" EXACT [FMA:72630]
synonym: "dorsal external arcuate fibers" EXACT [NIF_GrossAnatomy:birnlex_1250]
synonym: "dorsal external arcuate tract" EXACT [FMA:72630]
synonym: "dorsal superficial arcuate fibers" EXACT [FMA:72630]
synonym: "dorsal superficial arcuate fibers" EXACT [NIF_GrossAnatomy:birnlex_1250]
synonym: "external arcuate fibers" EXACT [NIF_GrossAnatomy:birnlex_1250]
xref: FMA:72630
xref: NIF_GrossAnatomy:birnlex_1250
is_a: UBERON:0000122 ! neuron projection bundle
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011215 ! cell part cluster of neuraxis
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0006090
name: glossopharyngeal nerve fiber bundle
synonym: "central part of glossopharyngeal nerve" EXACT [NIF_GrossAnatomy:birnlex_1274]
synonym: "central part of glossopharyngeal nerve" EXACT [FMA:72627]
synonym: "glossopharyngeal nerve fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_1274]
synonym: "glossopharyngeal nerve fibers" EXACT [NIF_GrossAnatomy:birnlex_1274]
synonym: "glossopharyngeal nerve fibers" EXACT [FMA:72627]
synonym: "glossopharyngeal nerve tract" EXACT [FMA:72627]
synonym: "ninth cranial nerve fibers" EXACT [NIF_GrossAnatomy:birnlex_1274]
synonym: "ninth cranial nerve fibers" EXACT [FMA:72627]
xref: FMA:72627
xref: NIF_GrossAnatomy:birnlex_1274
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0006091
name: inferior horn of the lateral ventricle
def: "The part of the lateral ventricle extending downward and anteriorly in the temporal lobe." [NIF_GrossAnatomy:birnlex_1292]
synonym: "cornu inferius ventriculi lateralis" EXACT [FMA:83701, FMA:TA]
synonym: "inferior horn of lateral ventricle" EXACT [FMA:83701]
synonym: "inferior horn of the lateral ventricle" EXACT [NIF_GrossAnatomy:birnlex_1292]
synonym: "temporal horn of lateral ventricle" EXACT [NIF_GrossAnatomy:birnlex_1292]
xref: FMA:83701
xref: NIF_GrossAnatomy:birnlex_1292
xref: SCTID:362315005
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0006092
name: cuneus cortex
def: "Component of the occipital lobe. The rostral boundary was the first coronal slice above the calcarine sulcus where the cuneus cortex becomes visible whereas the caudal boundary was the last slice where the calcarine sulcus was visualized. The medial boundary was the most medial portion of the occipital and parietal cortices. The superio-lateral boundary was the parieto-occipital fissure whereas the inferolateral boundary was the pericalcarine cortex (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1396]
synonym: "cuneate lobule" EXACT [NIF_GrossAnatomy:birnlex_1396]
synonym: "cuneate lobule" EXACT [FMA:61903]
synonym: "cuneus" EXACT [NIF_GrossAnatomy:birnlex_1396]
synonym: "cuneus cortex" EXACT [NIF_GrossAnatomy:birnlex_1396]
synonym: "cuneus gyrus" EXACT [NIF_GrossAnatomy:birnlex_1396]
synonym: "cuneus gyrus" EXACT [FMA:61903]
synonym: "cuneus of hemisphere" EXACT [FMA:61903]
synonym: "cuneus of hemisphere" EXACT [NIF_GrossAnatomy:birnlex_1396]
xref: FMA:61903
xref: NIF_GrossAnatomy:birnlex_1396
xref: SCTID:279199007
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
relationship: part_of UBERON:0001950 ! neocortex
relationship: part_of UBERON:0002021 ! occipital lobe
[Term]
id: UBERON:0006093
name: precuneus cortex
def: "Component of the pareital lobe. The rostral boundary was the posterior extent of the paracentral lobule whereas the caudal boundary was the lingual gyrus. The medial and lateral boundaries were the parieto-occipital fissure and the superior parietal gyrus respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1446]
synonym: "precuneate lobule" EXACT [FMA:61900]
synonym: "precuneate lobule" EXACT [NIF_GrossAnatomy:birnlex_1446]
synonym: "precuneus" EXACT [NIF_GrossAnatomy:birnlex_1446]
synonym: "precuneus cortex" EXACT [NIF_GrossAnatomy:birnlex_1446]
synonym: "quadrate lobule" EXACT [NIF_GrossAnatomy:birnlex_1446]
synonym: "quadrate lobule" EXACT [FMA:61900]
xref: FMA:61900
xref: NIF_GrossAnatomy:birnlex_1446
xref: SCTID:279200005
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
relationship: part_of UBERON:0001872 ! parietal lobe
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0006094
name: superior parietal cortex
def: "Copmonent of the parietal lobe. The rostral and caudal boundaries of the superior parietal cortex were the precentral gyrus and lateral occipital cortex respectively. The medial and lateral boundaries were the precuneus and/or cuneus cortex and the infererior parietal cortex respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1450]
synonym: "superior parietal cortex" EXACT [NIF_GrossAnatomy:birnlex_1450]
synonym: "superior parietal gyrus" EXACT [NIF_GrossAnatomy:birnlex_1450]
synonym: "superior parietal gyrus" EXACT [FMA:61899]
synonym: "superior parietal lobule" EXACT [NIF_GrossAnatomy:birnlex_1450]
synonym: "superior portion of parietal gyrus" EXACT [FMA:61899]
synonym: "superior portion of parietal gyrus" EXACT [NIF_GrossAnatomy:birnlex_1450]
xref: FMA:61899
xref: NIF_GrossAnatomy:birnlex_1450
xref: SCTID:279168006
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
relationship: part_of UBERON:0001872 ! parietal lobe
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0006095
name: anterior transverse termporal area 41
synonym: "anterior transverse temporal area 41" EXACT [FMA:68638]
synonym: "anterior transverse termporal area 41" EXACT [NIF_GrossAnatomy:birnlex_1582]
synonym: "area 41 of Brodmann" EXACT [FMA:68638]
synonym: "area 41 of Brodmann" EXACT [NIF_GrossAnatomy:birnlex_1582]
synonym: "brodmann area 41" EXACT [FMA:68638]
synonym: "Brodmann's area 41" EXACT [NIF_GrossAnatomy:birnlex_1582]
synonym: "principle auditory receptive areas" EXACT [NIF_GrossAnatomy:birnlex_1582]
xref: FMA:68638
xref: NIF_GrossAnatomy:birnlex_1582
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006096
name: posterior transverse termporal area 42
synonym: "area 42 of Brodmann" EXACT [FMA:68639]
synonym: "area 42 of Brodmann" EXACT [NIF_GrossAnatomy:birnlex_1589]
synonym: "auditory association area" EXACT [NIF_GrossAnatomy:birnlex_1589]
synonym: "brodmann area 42" EXACT [FMA:68639]
synonym: "Brodmann's area 42" EXACT [NIF_GrossAnatomy:birnlex_1589]
synonym: "posterior transverse temporal area 42" EXACT [FMA:68639]
synonym: "posterior transverse termporal area 42" EXACT [NIF_GrossAnatomy:birnlex_1589]
xref: FMA:68639
xref: NIF_GrossAnatomy:birnlex_1589
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006097
name: ventral external arcuate fiber bundle
synonym: "ventral external arcuate fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_1628]
synonym: "ventral external arcuate fibers" EXACT [NIF_GrossAnatomy:birnlex_1628]
synonym: "ventral external arcuate fibers" EXACT [FMA:72631]
synonym: "ventral external arcuate tract" EXACT [FMA:72631]
xref: FMA:72631
xref: NIF_GrossAnatomy:birnlex_1628
is_a: UBERON:0000122 ! neuron projection bundle
is_a: UBERON:0002678 ! regional part of medulla oblongata
is_a: UBERON:0011215 ! cell part cluster of neuraxis
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0006098
name: basal nuclear complex
def: "The deep nuclei found in the basal forebrain." [NIF_GrossAnatomy:birnlex_1629]
synonym: "basal ganglia" RELATED INCONSISTENT [NIF_GrossAnatomy:birnlex_1629]
synonym: "basal nuclei" EXACT [NIF_GrossAnatomy:birnlex_1629]
synonym: "basal nuclei of the forebrain" EXACT [NIF_GrossAnatomy:birnlex_1629]
xref: EV:0100182
xref: NIF_GrossAnatomy:birnlex_1629
is_a: UBERON:0002780 ! regional part of forebrain
relationship: part_of UBERON:0002743 ! basal forebrain
[Term]
id: UBERON:0006099
name: Brodmann (1909) area 1
def: "." [NIF_GrossAnatomy:birnlex_1732]
synonym: "area 1 of Brodmann" EXACT [FMA:68597]
synonym: "area 1 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1732]
synonym: "Area postcentralis intermedia" EXACT [NIF_GrossAnatomy:birnlex_1732]
synonym: "B09-1" EXACT [NIF_GrossAnatomy:birnlex_1732]
synonym: "Brodmann (1909) area 1" EXACT [NIF_GrossAnatomy:birnlex_1732]
synonym: "Brodmann area 1" EXACT [NIF_GrossAnatomy:birnlex_1732]
synonym: "Brodmann's area 1" EXACT [FMA:68597]
synonym: "intermediate postcentral" EXACT [NIF_GrossAnatomy:birnlex_1732]
synonym: "intermediate postcentral area" EXACT [FMA:68597]
xref: FMA:68597
xref: NIF_GrossAnatomy:birnlex_1732
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006100
name: Brodmann (1909) area 3
def: "." [NIF_GrossAnatomy:birnlex_1734]
synonym: "area 3 of Brodmann" EXACT [FMA:68599]
synonym: "area 3 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1734]
synonym: "Area postcentralis oralis" EXACT [NIF_GrossAnatomy:birnlex_1734]
synonym: "B09-3" EXACT [NIF_GrossAnatomy:birnlex_1734]
synonym: "Brodmann (1909) area 3" EXACT [NIF_GrossAnatomy:birnlex_1734]
synonym: "Brodmann area 3" EXACT [NIF_GrossAnatomy:birnlex_1734]
synonym: "Brodmann's area 3" EXACT [FMA:68599]
synonym: "rostral postcentral" EXACT [NIF_GrossAnatomy:birnlex_1734]
synonym: "rostral postcentral area" EXACT [FMA:68599]
xref: FMA:68599
xref: NIF_GrossAnatomy:birnlex_1734
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006101
name: Brodmann (1909) area 24
def: "." [NIF_GrossAnatomy:birnlex_1755]
synonym: "area 24 of Brodmann" EXACT [FMA:68621]
synonym: "area 24 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1755]
synonym: "Area cingularis anterior ventralis" EXACT [NIF_GrossAnatomy:birnlex_1755]
synonym: "B09-24" EXACT [NIF_GrossAnatomy:birnlex_1755]
synonym: "Brodmann (1909) area 24" EXACT [NIF_GrossAnatomy:birnlex_1755]
synonym: "Brodmann area 24" EXACT [NIF_GrossAnatomy:birnlex_1755]
synonym: "ventral anterior cingulate" EXACT [NIF_GrossAnatomy:birnlex_1755]
xref: FMA:68621
xref: NIF_GrossAnatomy:birnlex_1755
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006102
name: Brodmann (1909) area 35
synonym: "area 35 of Brodmann" EXACT [FMA:68632]
synonym: "area 35 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1768]
synonym: "Area perirhinalis" EXACT [NIF_GrossAnatomy:birnlex_1768]
synonym: "B09-35" EXACT [NIF_GrossAnatomy:birnlex_1768]
synonym: "Brodmann (1909) area 35" EXACT [NIF_GrossAnatomy:birnlex_1768]
synonym: "Brodmann Area 35" EXACT [NIF_GrossAnatomy:birnlex_1768]
synonym: "Brodmann area 35, perirhinal" EXACT [NIF_GrossAnatomy:birnlex_1768]
synonym: "Brodmann's area 35" EXACT [FMA:68632]
synonym: "Brodmann.35" EXACT [NIF_GrossAnatomy:birnlex_1768]
synonym: "perirhinal area 35" EXACT [FMA:68632]
xref: BTO:0004356
xref: FMA:68632
xref: NIF_GrossAnatomy:birnlex_1768
xref: SCTID:384790006
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006104
name: Brodmann (1909) area 36
synonym: "area 36 of Brodmann" EXACT [FMA:68633]
synonym: "area 36 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1769]
synonym: "Area ectorhinalis" EXACT [NIF_GrossAnatomy:birnlex_1769]
synonym: "B09-36" EXACT [NIF_GrossAnatomy:birnlex_1769]
synonym: "Brodmann (1909) area 36" EXACT [NIF_GrossAnatomy:birnlex_1769]
synonym: "Brodmann area 36" EXACT [NIF_GrossAnatomy:birnlex_1769]
synonym: "Brodmann.36" EXACT [NIF_GrossAnatomy:birnlex_1769]
synonym: "ectorhinal" EXACT [NIF_GrossAnatomy:birnlex_1769]
synonym: "ectorhinal area 36" EXACT [FMA:68633]
xref: BTO:0004357
xref: FMA:68633
xref: NIF_GrossAnatomy:birnlex_1769
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006105
name: basis modioli
synonym: "basis modioli cochleae" EXACT [FMA:75640, FMA:TA]
is_obsolete: true
[Term]
id: UBERON:0006106
name: cochlear canal
synonym: "cochlear canal" EXACT [NIF_GrossAnatomy:birnlex_2553]
synonym: "spiral canal of cochlea" EXACT [NIF_GrossAnatomy:birnlex_2553]
synonym: "wall of cochlea" EXACT [FMA:75371]
xref: FMA:75371
xref: NIF_GrossAnatomy:birnlex_2553
xref: SCTID:279779009
is_a: UBERON:0002558 ! organ cavity
relationship: part_of UBERON:0001844 ! cochlea
[Term]
id: UBERON:0006107
name: basolateral amygdaloid nuclear complex
synonym: "amygdalar basolateral nucleus" EXACT [NIF_GrossAnatomy:birnlex_2679]
synonym: "amygdaloid basolateral complex" EXACT [NIF_GrossAnatomy:birnlex_2679]
synonym: "amygdaloid basolateral complex" EXACT [FMA:84016]
synonym: "basolateral amygdaloid nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_2679]
synonym: "Basolateral nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_2679]
synonym: "basolateral nuclear group" EXACT [FMA:84016]
synonym: "basolateral nuclear group" EXACT [NIF_GrossAnatomy:birnlex_2679]
synonym: "basolateral nuclei of amygdala" EXACT [FMA:84016]
synonym: "BL" EXACT [NIF_GrossAnatomy:birnlex_2679]
synonym: "pars basolateralis (Corpus amygdaloideum)" EXACT [NIF_GrossAnatomy:birnlex_2679]
synonym: "vicarious cortex" EXACT [NIF_GrossAnatomy:birnlex_2679]
synonym: "vicarious cortex" EXACT [FMA:84016]
xref: FMA:84016
xref: NIF_GrossAnatomy:birnlex_2679
property_value: "spatially_disjoint_from" UBERON:0002023
is_a: UBERON:0002791 ! regional part of telencephalon
[Term]
id: UBERON:0006108
name: corticomedial nuclear complex
synonym: "amygdalar corticomedial nucleus" EXACT [NIF_GrossAnatomy:birnlex_2680]
synonym: "CMA" EXACT [NIF_GrossAnatomy:birnlex_2680]
synonym: "corticomedial nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_2680]
synonym: "corticomedial nuclear group" EXACT [FMA:84015]
synonym: "corticomedial nuclear group" EXACT [NIF_GrossAnatomy:birnlex_2680]
synonym: "corticomedial nuclei of amygdala" EXACT [FMA:84015]
synonym: "pars corticomedialis (Corpus amygdaloideum)" EXACT [NIF_GrossAnatomy:birnlex_2680]
xref: FMA:84015
xref: NIF_GrossAnatomy:birnlex_2680
is_a: UBERON:0002791 ! regional part of telencephalon
[Term]
id: UBERON:0006114
name: lateral occipital cortex
def: "Component of the occipital lobe. The rostral and caudal boundaries of the lateral occipital cortex were the superior parietal gyrus and as the last visible portion of occipital cortex respectively. The medial and lateral boundaries were the cuneus/pericalcarine cortex and the inferior temporal/inferior parietal gyri respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_735]
synonym: "gyrus occipitalis medius (mai)" EXACT [FMA:61902]
synonym: "gyrus occipitalis secundus" EXACT [FMA:61902]
synonym: "lateral occipital cortex" EXACT [NIF_GrossAnatomy:birnlex_735]
synonym: "lateral occipital gyrus" EXACT [NIF_GrossAnatomy:birnlex_735]
xref: FMA:61902
xref: NIF_GrossAnatomy:birnlex_735
xref: SCTID:369218006
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
relationship: part_of UBERON:0001950 ! neocortex
relationship: part_of UBERON:0002021 ! occipital lobe
[Term]
id: UBERON:0006115
name: posterior column of fornix
synonym: "crus fornicis" EXACT [FMA:61969, FMA:TA]
synonym: "crus of fornix" EXACT [FMA:61969]
synonym: "crus of fornix" EXACT [NIF_GrossAnatomy:birnlex_754]
synonym: "posterior column of fornix" EXACT [NIF_GrossAnatomy:birnlex_754]
synonym: "posterior column of fornix of forebrain" EXACT [FMA:61969]
synonym: "posterior crus of fornix" EXACT [NIF_GrossAnatomy:birnlex_754]
synonym: "posterior crus of fornix" EXACT [FMA:61969]
synonym: "posterior pillar of fornix" EXACT [NIF_GrossAnatomy:birnlex_754]
synonym: "posterior pillar of fornix" EXACT [FMA:61969]
xref: FMA:61969
xref: NIF_GrossAnatomy:birnlex_754
xref: SCTID:369116002
is_a: UBERON:0000122 ! neuron projection bundle
is_a: UBERON:0002780 ! regional part of forebrain
is_a: UBERON:0011215 ! cell part cluster of neuraxis
[Term]
id: UBERON:0006116
name: vagal nerve fiber bundle
synonym: "central part of vagus nerve" EXACT [FMA:72628]
synonym: "central part of vagus nerve" EXACT [NIF_GrossAnatomy:birnlex_765]
synonym: "tenth cranial nerve fibers" EXACT [FMA:72628]
synonym: "tenth cranial nerve fibers" EXACT [NIF_GrossAnatomy:birnlex_765]
synonym: "vagal nerve fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_765]
synonym: "vagal nerve fibers" EXACT [NIF_GrossAnatomy:birnlex_765]
synonym: "vagal nerve fibers" EXACT [FMA:72628]
synonym: "vagal nerve tract" EXACT [FMA:72628]
xref: FMA:72628
xref: NIF_GrossAnatomy:birnlex_765
is_a: UBERON:0000122 ! neuron projection bundle
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011215 ! cell part cluster of neuraxis
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0006117
name: accessory nerve fiber bundle
synonym: "accessory nerve fiber bundle" EXACT [NIF_GrossAnatomy:birnlex_916]
synonym: "accessory nerve fibers" EXACT [FMA:72626]
synonym: "accessory nerve fibers" EXACT [NIF_GrossAnatomy:birnlex_916]
synonym: "accessory nerve tract" EXACT [FMA:72626]
synonym: "eleventh cranial nerve fibers" EXACT [FMA:72626]
xref: FMA:72626
xref: NIF_GrossAnatomy:birnlex_916
is_a: UBERON:0000122 ! neuron projection bundle
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011215 ! cell part cluster of neuraxis
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0006118
name: lamina I of gray matter of spinal cord
synonym: "lamina i of gray matter of spinal cord" EXACT [NIF_GrossAnatomy:nlx_anat_100203]
synonym: "Lamina marginalis" EXACT [NIF_GrossAnatomy:nlx_anat_100203]
synonym: "lamina marginalis" EXACT [FMA:68862]
synonym: "lamina spinalis i" EXACT [FMA:68862, FMA:TA]
synonym: "Layer of Waldeyer" EXACT [NIF_GrossAnatomy:nlx_anat_100203]
synonym: "layer of waldeyer" EXACT [FMA:68862]
synonym: "Rexed lamina I" EXACT [NIF_GrossAnatomy:nlx_anat_100203]
synonym: "rexed lamina i" EXACT [FMA:68862]
synonym: "Rexed layer 1" EXACT [NIF_GrossAnatomy:nlx_anat_100203]
synonym: "Spinal lamina I" EXACT [NIF_GrossAnatomy:nlx_anat_100203]
synonym: "spinal lamina i" EXACT [FMA:68862]
xref: FMA:68862
xref: NIF_GrossAnatomy:nlx_anat_100203
is_a: UBERON:0001948 ! regional part of spinal cord
relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord
[Term]
id: UBERON:0006119
name: subbrachial nucleus
comment: Candidate definition (refers specifically to mouse): "A group of cells ventral to the nucleus of brachium of inferior colliculus in the mouse (Paxinos-2001)." [NIF_GrossAnatomy:nlx_anat_1005003]
synonym: "subbrachial nucleus" EXACT [NIF_GrossAnatomy:nlx_anat_1005003]
synonym: "tegmental area of tsai" EXACT [FMA:77494]
xref: FMA:77494
xref: NIF_GrossAnatomy:nlx_anat_1005003
is_a: UBERON:0011214 {source="FMA"} ! nucleus of midbrain tectum
[Term]
id: UBERON:0006120
name: superior colliculus superficial gray layer
synonym: "lamina colliculi superioris ii" EXACT [FMA:72407, FMA:TA]
synonym: "lamina II of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit]
synonym: "layer II of superior colliculus" EXACT [FMA:72407]
synonym: "outer gray layer of superior colliculus" EXACT [FMA:72407]
synonym: "stratum griseum superficiale colliculi superioris" EXACT [FMA:72407, FMA:TA]
synonym: "stratum griseum superficiale of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit]
synonym: "superficial gray layer of superior colliculus" EXACT [FMA:72407]
synonym: "superficial grey layer of superior colliculus" EXACT [FMA:72407]
synonym: "superior colliculus superficial gray layer" EXACT [NIF_GrossAnatomy:nlx_anat_1005034]
xref: ABA:SCsg
xref: FMA:72407
xref: NIF_GrossAnatomy:nlx_anat_1005034
property_value: "spatially_disjoint_from" UBERON:0006779
property_value: "spatially_disjoint_from" UBERON:0006780
is_a: UBERON:0006785 ! gray matter layer of superior colliculus
is_a: UBERON:0006791 ! superficial layer of superior colliculus
[Term]
id: UBERON:0006121
name: hemispheric lobule VIII
synonym: "Biventer 1 (HVIII)" EXACT [NIF_GrossAnatomy:nlx_anat_20081211]
synonym: "biventer lobule" EXACT [FMA:72526]
synonym: "Biventral Lobule" EXACT [NIF_GrossAnatomy:nlx_anat_20081211]
synonym: "biventral lobule" EXACT [FMA:72526]
synonym: "biventral lobule [h viii]" EXACT [FMA:72526]
synonym: "cuneiform lobe" EXACT [FMA:72526]
synonym: "dorsal parafloccularis [h viii b]" EXACT [FMA:72526]
synonym: "dorsal paraflocculus" EXACT [FMA:72526]
synonym: "hemispheric lobule viii" EXACT [NIF_GrossAnatomy:nlx_anat_20081211]
synonym: "Lobulus Biventer" EXACT [NIF_GrossAnatomy:nlx_anat_20081211]
synonym: "lobulus biventer [h viii]" EXACT [FMA:72526, FMA:TA]
synonym: "lobulus parafloccularis dorsalis [h viii b]" EXACT [FMA:72526, FMA:TA]
synonym: "Paraflocculus Dorsalis" EXACT [NIF_GrossAnatomy:nlx_anat_20081211]
xref: FMA:72526
xref: NIF_GrossAnatomy:nlx_anat_20081211
is_a: UBERON:0004003 ! cerebellum hemisphere lobule
[Term]
id: UBERON:0006122
name: retrorubral area
comment: Made obsolete as it grouped two unrelated classes
synonym: "A8" RELATED [NIF_GrossAnatomy:nlx_anat_20090301]
is_obsolete: true
[Term]
id: UBERON:0006123
name: horizontal limb of the diagonal band
synonym: "Diagonal band horizontal limb" EXACT [NIF_GrossAnatomy:nlx_anat_20090303]
synonym: "hDBB" EXACT [NIF_GrossAnatomy:nlx_anat_20090303]
synonym: "horizontal limb of diagonal band" EXACT [FMA:77611]
synonym: "horizontal limb of the diagonal band" EXACT [NIF_GrossAnatomy:nlx_anat_20090303]
synonym: "Horizontal limb of the diagonal band of Broca" EXACT [NIF_GrossAnatomy:nlx_anat_20090303]
xref: FMA:77611
xref: NIF_GrossAnatomy:nlx_anat_20090303
is_a: UBERON:0006125 ! subdivision of diagonal band
[Term]
id: UBERON:0006124
name: vertical limb of the diagonal band
synonym: "vertical limb of diagonal band" EXACT [FMA:77612]
synonym: "vertical limb of the diagonal band" EXACT [NIF_GrossAnatomy:nlx_anat_20090304]
synonym: "Vertical limb of the diagonal band of Broca" EXACT [NIF_GrossAnatomy:nlx_anat_20090304]
xref: FMA:77612
xref: NIF_GrossAnatomy:nlx_anat_20090304
is_a: UBERON:0006125 ! subdivision of diagonal band
[Term]
id: UBERON:0006125
name: subdivision of diagonal band
synonym: "diagonal band subdivision" EXACT [FMA:77610]
synonym: "regional part of diagonal band" EXACT [NIF_GrossAnatomy:nlx_anat_20090302]
xref: FMA:77610
xref: NIF_GrossAnatomy:nlx_anat_20090302
is_a: UBERON:0002791 ! regional part of telencephalon
[Term]
id: UBERON:0006127
name: funiculus of spinal cord
synonym: "spinal cord funiculus" EXACT [FMA:77460]
synonym: "white column of spinal cord" EXACT [FMA:77460]
xref: FMA:77460
is_a: UBERON:0006080 ! segment of white matter of spinal cord
is_a: UBERON:0006133 ! funiculus of neuraxis
is_a: UBERON:0011215 ! cell part cluster of neuraxis
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0006133
name: funiculus of neuraxis
def: "The cerebrospinal nerves consist of numerous nerve fibers collected together and enclosed in membranous sheaths. A small bundle of fibers, enclosed in a tubular sheath, is called a funiculus; if the nerve is of small size, it may consist only of a single funiculus; but if large, the funiculi are collected together into larger bundles or fasciculi, which are bound together in a common membranous investment. Examples include: Anterior funiculus of the spinal cord Lateral funiculus of the spinal cord Posterior funiculus of the spinal cord Funiculus solitarius of the medulla Funiculus separans" [Wikipedia:Funiculus_%28neurology%29]
xref: FMA:76738
is_a: UBERON:0000122 ! neuron projection bundle
[Term]
id: UBERON:0006134
name: nerve fiber
def: "A threadlike extension of a nerve cell and consists of an axon and myelin sheath (if existence) in the nervous system. There are nerve fibers in the central nervous system and peripheral nervous system. A nerve fiber may be myelinated and/or unmyelinated. In the central nervous system (CNS), myelin by oligodendroglia cells is formed. Schwann cells form myelin in the peripheral nervous system (PNS). Schwann cells also make a thin covering in an axon without myelin (in the PNS). A peripheral nerve fiber contains an axon, myelin sheath, schwann cells and its endoneurium. There are no endoneurium and schwann cells in the central nervous system" [Wikipedia:Nervous_system_fiber]
synonym: "nerve fibre" EXACT [FMA:5914]
synonym: "neurofibra" EXACT [FMA:5914, FMA:TA]
synonym: "neurofibra" RELATED LATIN [Wikipedia:Nerve_fiber]
synonym: "neurofibrum" EXACT [FMA:5914]
xref: FMA:5914
xref: MESH:A.08.663.542
xref: SCTID:88545005
is_a: UBERON:0000470 ! cell part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001019 ! fascicle
[Term]
id: UBERON:0006135
name: myelinated nerve fiber
comment: consider adding link to UBERON:0002316
xref: FMA:5915
xref: GAID:745
xref: MESH:A.08.663.542.512
xref: ncithesaurus:Myelinated_Nerve_Fiber
xref: SCTID:362296008
is_a: UBERON:0006134 ! nerve fiber
[Term]
id: UBERON:0006136
name: unmyelinated nerve fiber
synonym: "non-myelinated nerve fiber" EXACT [FMA:5916]
xref: FMA:5916
xref: GAID:767
xref: MESH:A.08.663.542.756
xref: ncithesaurus:Unmyelinated_Nerve_Fiber
xref: SCTID:46920005
is_a: UBERON:0006134 ! nerve fiber
[Term]
id: UBERON:0006137
name: proper palmar digital artery
def: "The proper palmar digital arteries travel along the sides of the phalanges (along the contiguous sides of the index, middle, ring, and little fingers), each artery lying just below its corresponding digital nerve. Alternative names for these arteries are: proper volar digital arteries, collateral digital arteries, arteriae digitales palmares propriae, or aa. digitales volares propriae. They anastomose freely in the subcutaneous tissue of the finger tips and by smaller branches near the interphalangeal joints. Each also gives off a couple of dorsal branches which anastomose with the dorsal digital arteries, and supply the soft parts on the back of the second and third phalanges, including the matrix of the fingernail. The proper palmar digital artery for the medial side of the little finger arises directly from the ulnar artery deep to the palmaris brevis muscle, but the rest arise from the common palmar digital arteries." [Wikipedia:Proper_palmar_digital_arteries]
comment: the MA term, even though plural, represents the singular, as it is an isa child of artery
synonym: "arteriae digitales palmares propriae" EXACT [FMA:70804, FMA:TA]
synonym: "arteriae digitales palmares propriae" RELATED LATIN [Wikipedia:Proper_palmar_digital_arteries]
synonym: "proper palmal digital arteries" EXACT [MA:0001959]
synonym: "proper palmar digital arteries" EXACT [MA:0001959]
synonym: "proper palmar digital arteries set" EXACT [FMA:70804]
synonym: "proper volar digital arteries" RELATED [Wikipedia:Proper_palmar_digital_arteries]
synonym: "proper volar digital artery" RELATED [Wikipedia:Proper_palmar_digital_arteries]
xref: FMA:70804
xref: http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray1237.svg
xref: MA:0001959
xref: SCTID:91778006
is_a: UBERON:0006141 ! palmar digital artery
[Term]
id: UBERON:0006138
name: plantar digital artery
xref: FMA:43971
xref: SCTID:230727008
is_a: UBERON:0004554 {source="FMA"} ! hindlimb digital artery
[Term]
id: UBERON:0006139
name: plantar digital vein
def: "The plantar digital veins arise from plexuses on the plantar surfaces of the digits, and, after sending intercapitular veins to join the dorsal digital veins, unite to form four metatarsal veins." [Wikipedia:Plantar_digital_veins]
synonym: "venae digitales plantares" RELATED LATIN [Wikipedia:Plantar_digital_veins]
xref: FMA:44517
is_a: UBERON:0004564 ! hindlimb digital vein
[Term]
id: UBERON:0006140
name: palmar digital vein
def: "The palmar digital veins (or volar digital veins) on each finger are connected to the dorsal digital veins by oblique intercapitular veins. Some sources distinguish between the \"proper palmar digital veins\", which are more distal, and the \"common palmar digital veins\", which are more proximal." [Wikipedia:Palmar_digital_veins]
synonym: "palmar digital veins" EXACT PLURAL [FMA:70895]
synonym: "palmar digital veins set" EXACT PLURAL [FMA:70895]
synonym: "venae digitales palmares" EXACT [FMA:70895, FMA:TA]
synonym: "venae digitales palmares" RELATED LATIN [Wikipedia:Palmar_digital_veins]
synonym: "volar digital veins" RELATED [Wikipedia:Palmar_digital_veins]
xref: FMA:70895
xref: http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Gray574.png/200px-Gray574.png
xref: SCTID:83229009
is_a: UBERON:0004563 ! forelimb digital vein
[Term]
id: UBERON:0006141
name: palmar digital artery
is_a: UBERON:0004553 ! forelimb digital artery
[Term]
id: UBERON:0006142
name: common plantar digital vein
synonym: "common plantar vein" EXACT [MA:0002134]
xref: MA:0002134
is_a: UBERON:0006139 ! plantar digital vein
[Term]
id: UBERON:0006143
name: proper plantar digital vein
synonym: "proper plantar vein" EXACT [MA:0002138]
xref: MA:0002138
is_a: UBERON:0006139 ! plantar digital vein
[Term]
id: UBERON:0006144
name: medial plantar digital vein
synonym: "medial plantar vein" EXACT [MA:0002172]
xref: MA:0002172
is_a: UBERON:0006139 ! plantar digital vein
[Term]
id: UBERON:0006145
name: dorsal digital artery of foot
def: "The dorsal digital arteries of foot are small arteries which supply the toes." [Wikipedia:Dorsal_digital_arteries_of_foot]
synonym: "arteriae digitales dorsales pedis" RELATED LATIN [Wikipedia:Dorsal_digital_arteries_of_foot]
xref: FMA:44660
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray553.png
xref: SCTID:230173000
is_a: UBERON:0004554 ! hindlimb digital artery
is_a: UBERON:0006163 ! dorsal digital artery
relationship: part_of UBERON:0002103
intersection_of: UBERON:0006163 ! dorsal digital artery
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0006146
name: dorsal digital artery of hand
def: "Dorsal digital arteries arise from the bifurcation of dorsal metacarpal arteries. They travel along the sides and dorsal aspects of the phalanges of the middle finger, ring finger, and little finger. They communicate with the proper palmar digital arteries. They run with the dorsal digital nerves of ulnar nerve and dorsal digital nerves of radial nerve." [Wikipedia:Dorsal_digital_arteries]
synonym: "arteriae digitales dorsales manus" RELATED LATIN [Wikipedia:Dorsal_digital_arteries]
synonym: "dorsal digital artery" BROAD [Wikipedia:Dorsal_digital_arteries]
xref: SCTID:91793005
is_a: UBERON:0004553 ! forelimb digital artery
is_a: UBERON:0006163 ! dorsal digital artery
relationship: part_of UBERON:0002102
intersection_of: UBERON:0006163 ! dorsal digital artery
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0006163
name: dorsal digital artery
synonym: "arteriae digitales dorsales" EXACT [FMA:70801, FMA:TA]
synonym: "dorsal digital arteries" EXACT [FMA:70801]
synonym: "dorsal digital arteries set" EXACT [FMA:70801]
xref: FMA:70801
is_a: UBERON:0004552 ! digital artery
[Term]
id: UBERON:0006164
name: forelimb common dorsal digital arteries
xref: MA:0001954
is_a: UBERON:0006146 ! dorsal digital artery of hand
[Term]
id: UBERON:0006165
name: median dorsal digital artery for digit 1
synonym: "median dorsal digital artery for digit 01" EXACT [MA:0001955]
xref: MA:0001955
is_a: UBERON:0006146 ! dorsal digital artery of hand
[Term]
id: UBERON:0006166
name: lateral dorsal digital artery for digit 5
synonym: "lateral dorsal digital artery for digit 05" EXACT [MA:0001956]
xref: MA:0001956
is_a: UBERON:0006146 ! dorsal digital artery of hand
[Term]
id: UBERON:0006167
name: forelimb proper dorsal digital arteries
xref: MA:0001958
is_a: UBERON:0006146 ! dorsal digital artery of hand
[Term]
id: UBERON:0006168
name: hindlimb common dorsal digital arteries
xref: MA:0001965
is_a: UBERON:0006145 ! dorsal digital artery of foot
[Term]
id: UBERON:0006169
name: hindlimb proper dorsal digital arteries
xref: MA:0001967
is_a: UBERON:0006145 ! dorsal digital artery of foot
[Term]
id: UBERON:0006170
name: mesonephric capsule
def: "The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue." [GO:0061285, GOC:mtg_kidney_jan10]
is_a: UBERON:0002015 ! kidney capsule
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000080
intersection_of: UBERON:0002015 ! kidney capsule
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0006171
name: renal sinus
xref: FMA:15611
xref: SCTID:362222000
is_a: UBERON:0002558 ! organ cavity
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0006172
name: rectal diverticulum
def: "The rectal diverticulum is an outgrowth of the cloaca and links the pronephric kidney to the exterior" [GO:0039009]
xref: XAO:0001015
is_a: UBERON:0000061 ! anatomical structure
relationship: continuous_with UBERON:0000163 ! embryonic cloaca
relationship: continuous_with UBERON:0002120 ! pronephros
[Term]
id: UBERON:0006173
name: pronephric proximal tubule
def: "A pronephric nephron tubule is an epithelial tube that is part of the pronephros" [GO:0039011]
synonym: "pronephros proximal tubule" EXACT [GO:0039011]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004134 ! proximal tubule
relationship: part_of UBERON:0002120
intersection_of: UBERON:0004134 ! proximal tubule
intersection_of: part_of UBERON:0002120 ! pronephros
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0006174
name: pronephric sinus
def: "The pronephric sinus is an ill-defined capillary network that lies between the pronephric tubules" [GO:0039012]
comment: todo - check relationship to renal sinus, improve definition
xref: AAO:0011092
xref: XAO:0000385
is_a: UBERON:0006171 ! renal sinus
relationship: part_of UBERON:0002120
intersection_of: UBERON:0006171 ! renal sinus
intersection_of: part_of UBERON:0002120 ! pronephros
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0006175
name: pronephric distal tubule
def: "A pronephric nephron tubule is an epithelial tube that is part of the pronephros" [GO:0039013]
is_a: UBERON:0004135 ! distal tubule
is_a: UBERON:0005310 ! pronephric nephron tubule
relationship: part_of UBERON:0002120
intersection_of: UBERON:0004135 ! distal tubule
intersection_of: part_of UBERON:0002120 ! pronephros
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0006182
name: mesonephric glomerular mesangium
def: "The mesonephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the mesonephros, which helps to support the capillary loops in a renal glomerulus" [GO:0061247]
is_a: UBERON:0002320 ! glomerular mesangium
relationship: part_of UBERON:0000080
intersection_of: UBERON:0002320 ! glomerular mesangium
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0006183
name: mesonephric glomerular capillary
def: "." [GO:0061249]
is_a: UBERON:0000083 ! mesonephric tubule
is_a: UBERON:0004212 ! glomerular capillary
is_a: UBERON:0005327 ! mesonephric glomerular epithelium
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004212 ! glomerular capillary
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0006189
name: mesonephric connecting tubule
def: "The mesonephric connecting tubule is a tubular segment of the mesonephric nephron; it connects the distal tubule to the collecting duct in the mesonephros" [GO:0061272]
is_a: UBERON:0000083 ! mesonephric tubule
is_a: UBERON:0005097 ! connecting tubule
is_a: UBERON:0005330 ! mesonephric nephron epithelium
relationship: part_of UBERON:0000080
intersection_of: UBERON:0005097 ! connecting tubule
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0006190
name: mesonephric distal tubule
def: "The mesonephric distal tubule is a mesonephric nephron tubule that begins at the macula densa and extends to the mesonephric connecting tubule" [GO:0061273]
comment: note that ZFA has terms for developing tubule
is_a: UBERON:0000083 ! mesonephric tubule
is_a: UBERON:0004135 ! distal tubule
is_a: UBERON:0005330 ! mesonephric nephron epithelium
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004135 ! distal tubule
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0006192
name: mesonephric proximal tubule
def: "The mesonephric proximal tubule extends from the capsule to the distal tubule" [GO:0061275]
comment: note that ZFA has terms for developing tubule
is_a: UBERON:0000083 ! mesonephric tubule
is_a: UBERON:0004134 ! proximal tubule
is_a: UBERON:0005330 ! mesonephric nephron epithelium
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004134 ! proximal tubule
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0006194
name: renal sinus of right kidney
synonym: "right renal sinus" EXACT [FMA:17621]
xref: FMA:17621
is_a: UBERON:0006171 ! renal sinus
relationship: part_of UBERON:0004539
intersection_of: UBERON:0006171 ! renal sinus
intersection_of: part_of UBERON:0004539 ! right kidney
relationship: part_of UBERON:0004539 ! right kidney
[Term]
id: UBERON:0006195
name: renal sinus of left kidney
synonym: "left renal sinus" EXACT [FMA:17622]
xref: FMA:17622
is_a: UBERON:0006171 ! renal sinus
relationship: part_of UBERON:0004538
intersection_of: UBERON:0006171 ! renal sinus
intersection_of: part_of UBERON:0004538 ! left kidney
relationship: part_of UBERON:0004538 ! left kidney
[Term]
id: UBERON:0006196
name: mesonephric sinus
comment: todo - check relationship to renal sinus, add definition
xref: AAO:0011063
xref: XAO:0000381
is_a: UBERON:0006171 ! renal sinus
relationship: part_of UBERON:0000080
intersection_of: UBERON:0006171 ! renal sinus
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0006197
name: auricular vein
xref: ncithesaurus:Auricular_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0006198
name: dorsal intercostal artery
def: "The highest intercostal artery (supreme intercostal artery, superior intercostal artery) is an artery in the human body that usually gives rise to the first and second posterior intercostal arteries, which supply blood to their corresponding intercostal space. It usually arises from the costocervical trunk, which is a branch of the subclavian artery." [Wikipedia:Highest_intercostal_artery]
comment: classes unified on basis of spatial anatomy ontology synonyms
synonym: "arteria intercostalis suprema" RELATED LATIN [Wikipedia:Highest_intercostal_artery]
synonym: "dorsal branch of superior intercostal artery" RELATED [http://www.mondofacto.com/facts/dictionary?dorsal+branch+of+the+superior+intercostal+artery]
synonym: "superior intercostal artery" EXACT [FMA:76998, Wikipedia:Highest_intercostal_artery]
synonym: "supreme intercostal artery" EXACT [FMA:76998, Wikipedia:Highest_intercostal_artery]
xref: FMA:76998
xref: http://upload.wikimedia.org/wikipedia/commons/7/75/Gray530.png
xref: MA:0001943
xref: SCTID:198427009
is_a: UBERON:0005612 ! intercostal artery
[Term]
id: UBERON:0006199
name: caudal auricular vein
def: "The posterior auricular vein begins upon the side of the head, in a plexus which communicates with the tributaries of the occipital vein and superficial temporal veins. It descends behind the auricula, and joins the posterior division of the posterior facial vein to form the external jugular. It receive the stylomastoid vein, and some tributaries from the cranial surface of the auricula." [Wikipedia:Posterior_auricular_vein]
comment: classes unified on basis of spatial anatomy ontology synonyms
synonym: "posterior auricular vein" EXACT [FMA:50851]
synonym: "v. auricularis posterior" RELATED LATIN [Wikipedia:Posterior_auricular_vein]
xref: FMA:50851
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
xref: MA:0002090
xref: ncithesaurus:Posterior_Auricular_Vein
xref: SCTID:150188002
is_a: UBERON:0006197 ! auricular vein
relationship: tributary_of UBERON:0001101 {source="FMA/obol"} ! external jugular vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
[Term]
id: UBERON:0006200
name: caudal humeral circumflex vein
comment: classes unified on basis of spatial anatomy ontology synonyms
synonym: "posterior circumflex humeral vein" EXACT [FMA:71216]
synonym: "posterior humeral circumflex vein" EXACT [FMA:71216]
synonym: "vena circumflexa humeri posterior" EXACT [FMA:71216, FMA:TA]
xref: FMA:71216
xref: MA:0002091
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0000985 {source="FMA/obol"} ! axillary vein
relationship: tributary_of UBERON:0001587 {source="FMA/obol"} ! subclavian vein
[Term]
id: UBERON:0006201
name: dorsal cerebral vein
comment: classes unified on basis of spatial anatomy ontology synonyms
synonym: "superior cerebral vein" EXACT [FMA:50978]
xref: FMA:50978
xref: MA:0002103
xref: SCTID:244393005
is_a: UBERON:0001663 ! cerebral vein
[Term]
id: UBERON:0006202
name: ventral labial vein
def: "The inferior labial vein is the vein receiving blood from the lower lip." [Wikipedia:Inferior_labial_vein]
comment: classes unified on basis of spatial anatomy ontology synonyms
synonym: "inferior labial vein" EXACT [FMA:52541]
synonym: "venae labiales inferiores" RELATED LATIN [Wikipedia:Inferior_labial_vein]
xref: FMA:52541
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png
xref: MA:0002260
xref: SCTID:422955002
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001653 {source="FMA/obol"} ! facial vein
[Term]
id: UBERON:0006203
name: conchal part of pinna
synonym: "concha" BROAD [FMA:61006]
synonym: "concha auriculae" EXACT [FMA:61006, FMA:TA]
synonym: "concha of auricle" EXACT [FMA:61006]
synonym: "concha of pinna" EXACT [FMA:61006]
xref: FMA:61006
xref: ncithesaurus:Concha
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0006204
name: inguinal ligament
def: "a band running from the pubic tubercle to the anterior superior iliac spine. Its anatomy is very important for operating on hernia patients. It forms the base of the inguinal canal through which an indirect inguinal hernia may develop. The inguinal ligament runs from the anterior superior iliac spine of the ilium to the pubic tubercle of the pubic bone. It is formed by the external abdominal oblique aponeurosis and is continuous with the fascia lata of the thigh." [Wikipedia:Inguinal_ligament]
synonym: "fallopian ligament" EXACT DUBIOUS [FMA:19855, Wikipedia:Inguinal_ligament]
synonym: "Poupart's ligament" EXACT DUBIOUS [FMA:19855, Wikipedia:Inguinal_ligament]
synonym: "Vesalius' ligament" EXACT [FMA:19855]
xref: FMA:19855
xref: SCTID:361900000
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003567 ! abdomen connective tissue
relationship: part_of UBERON:0005442 ! external oblique
[Term]
id: UBERON:0006205
name: pectineal ligament
comment: we include a disjointness axiom to avoid confusion that may arise from the synonyms 'ligamentum pectineale' and 'ligamentum pectinum'
synonym: "cooper's ligament (groin)" EXACT [FMA:20188]
synonym: "ligamentum pectineale" EXACT [FMA:20188]
xref: FMA:20188
xref: SCTID:256661003
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0006204 ! inguinal ligament
[Term]
id: UBERON:0006206
name: iridocorneal angle
def: "acute angle occurring between the iris and the cornea at the periphery of the anterior chamber of the eye[MP]." [MP:0004221]
synonym: "anterior chamber angle" EXACT [FMA:58577]
xref: FMA:58577
xref: SCTID:244498000
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0003956 ! aqueous drainage system
[Term]
id: UBERON:0006207
name: aortico-pulmonary spiral septum
def: "The aorticopulmonary septum is developmentally formed from neural crest, specifically the cardiac neural crest, and actively separates the aorta and pulmonary arteries and fuses with the interventricular septum within the heart during development. The actual mechanism of septation of the outflow tract is poorly understood, but is recognized as a dynamic process with contributions from contractile, hemodynamic, and extracellular matrix interactions." [Wikipedia:Aorticopulmonary_septum]
subset: emapa_ehdaa2
synonym: "aortic septum" RELATED [Wikipedia:Aorticopulmonary_septum]
synonym: "aortico-pulmonary septum" RELATED [Wikipedia:Aorticopulmonary_septum]
synonym: "aorticopulmonary septum" RELATED [Wikipedia:Aorticopulmonary_septum]
synonym: "septum aorticopulmonale" RELATED LATIN [Wikipedia:Aorticopulmonary_septum]
synonym: "spiral septum" RELATED [Wikipedia:Aorticopulmonary_septum]
xref: EHDAA2:0000136
xref: EHDAA:2592
xref: EMAPA:16827
xref: http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray470.png
xref: VHOG:0000502
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0002342 {source="Wikipedia"} ! neural crest
relationship: part_of UBERON:0004145 {source="EMAPA"} ! outflow tract
[Term]
id: UBERON:0006208
name: auditory hillocks
subset: emapa_ehdaa2
xref: EHDAA2:0000155
xref: EHDAA:4685
xref: EMAPA:17280
xref: VHOG:0001364
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0001691 ! external ear
[Term]
id: UBERON:0006209
name: basioccipital cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0000164
xref: EHDAA:7141
xref: EMAPA:18337
xref: VHOG:0001124
is_a: UBERON:0005863 ! cartilaginous condensation
relationship: develops_from UBERON:0009197 {source="EHDAA2"} ! basioccipital pre-cartilage condensation
relationship: develops_into UBERON:0001692 ! basioccipital bone
[Term]
id: UBERON:0006210
name: body-wall mesenchyme
subset: emapa_ehdaa2
xref: EHDAA2:0000179
xref: EHDAA:3217
xref: EMAPA:16893
is_a: UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0006211
name: buccopharyngeal membrane
def: "The region where the crescentic masses of the ectoderm and endoderm come into direct contact with each other constitutes a thin membrane, the buccopharyngeal membrane (or oropharyngeal membrane), which forms a septum between the primitive mouth and pharynx. In front of the buccopharyngeal area, where the lateral crescents of mesoderm fuse in the middle line, the pericardium is afterward developed, and this region is therefore designated the pericardial area." [Wikipedia:Buccopharyngeal_membrane]
subset: emapa_ehdaa2
synonym: "oropharyngeal membrane" RELATED [Wikipedia:Buccopharyngeal_membrane]
xref: EHDAA2:0000189
xref: EHDAA:536
xref: EMAPA:16259
xref: http://upload.wikimedia.org/wikipedia/commons/9/93/Gray977.png
xref: SCTID:361412007
xref: VHOG:0000380
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003037 ! septum
relationship: has_part UBERON:0000924 ! ectoderm
relationship: has_part UBERON:0000925 ! endoderm
relationship: overlaps UBERON:0000930 ! stomodeum
relationship: overlaps UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0006264 {source="EHDAA2"} ! mouth-foregut junction
[Term]
id: UBERON:0006212
name: bulbo-ventricular groove
subset: emapa_ehdaa2
synonym: "bulbo-ventricular sulcus" EXACT [EMAPA:16693]
synonym: "ependymal groove" EXACT [EMAPA:16693]
synonym: "ependymal sulcus" EXACT [EMAPA:16693]
xref: EHDAA2:0000195
xref: EHDAA:766
xref: EMAPA:16693
xref: VHOG:0001405
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0006213
name: carpus cartilage condensation
xref: EHDAA2:0000221
xref: EHDAA:8544
xref: EMAPA:18102
xref: VHOG:0001123
is_a: UBERON:0010377 ! mesenchyme from somatopleure
is_a: UBERON:0010883 ! forelimb bone cartilaginous condensation
relationship: develops_into UBERON:0001435
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0001435 ! carpal bone
relationship: develops_from UBERON:0006214 ! carpus pre-cartilage condensation
relationship: develops_into UBERON:0001435 ! carpal bone
[Term]
id: UBERON:0006214
name: carpus pre-cartilage condensation
xref: EHDAA2:0000222
xref: EHDAA:6324
xref: EMAPA:17724
xref: VHOG:0000955
is_a: UBERON:0009523 ! mesenchyme of handplate
is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation
relationship: develops_into UBERON:0001435
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0001435 ! carpal bone
relationship: develops_from UBERON:0003319 ! mesenchyme of carpal region
relationship: develops_into UBERON:0001435 ! carpal bone
relationship: part_of UBERON:0009523 ! mesenchyme of handplate
[Term]
id: UBERON:0006215
name: rhombic lip
def: "The interface between the dorsal neuroepithelium and the roof plate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator]
subset: vertebrate_core
synonym: "cerebellum primordium" RELATED [EMAPA:17074]
synonym: "dorsal part of alar plate of metencephalon" RELATED [EMAPA:17074]
xref: EHDAA2:0000229
xref: EMAPA:17074
xref: TAO:0001440
xref: XAO:0004135
xref: ZFA:0001440
property_value: UBPROP:0000001 "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain.[TAO]" xsd:string
is_a: UBERON:0001048 ! primordium
relationship: develops_into UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0006216
name: cervical sinus
def: "The mandibular and hyoid arches grow more rapidly than those behind them, with the result that the latter become, to a certain extent, telescoped within the former, and a deep depression, the cervical sinus, is formed on either side of the neck." [Wikipedia:Cervical_sinus]
comment: This sinus is bounded in front by the hyoid arch, and behind by the thoracic wall; it is ultimately obliterated by the fusion of its walls.
subset: emapa_ehdaa2
synonym: "sinus cervicalis" EXACT [Wikipedia:Cervical_sinus]
synonym: "sinus cervicalis" RELATED LATIN [Wikipedia:Cervical_sinus]
xref: EHDAA2:0000078
xref: EMAPA:17526
xref: http://upload.wikimedia.org/wikipedia/commons/2/20/Kiemenbogen.jpg
xref: RETIRED_EHDAA2:0000239
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0008814 ! pharyngeal system
[Term]
id: UBERON:0006217
name: cloacal membrane
def: "The cloacal membrane is the membrane that covers the embryonic cloaca when still in the development of the urinary and reproductive organs. It is formed by ectoderm and endoderm coming into contact with each other. After separation of the cloaca into the urogenital and anal parts, the cloacal membrane, in turn, is separated into a urogenital membrane and an anal membrane." [Wikipedia:Cloacal_membrane]
subset: emapa_ehdaa2
synonym: "membrana cloacalis" RELATED LATIN [Wikipedia:Cloacal_membrane]
xref: EHDAA2:0000257
xref: EHDAA:214
xref: EHDAA:2933
xref: EMAPA:16832
xref: http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray991.png
xref: ncithesaurus:Cloacal_Membrane
xref: SCTID:308826008
xref: VHOG:0001198
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0004341 {source="Wikipedia"} ! primitive streak
relationship: part_of UBERON:0000163 ! embryonic cloaca
[Term]
id: UBERON:0006218
name: common atrial chamber
subset: emapa_ehdaa2
xref: EHDAA:1267
xref: EMAPA:16225
xref: EMAPA:16342
xref: EMAPA:16689
xref: RETIRED_EHDAA2:0000268
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0006219
name: deltoid pre-muscle mass
subset: emapa_ehdaa2
xref: EHDAA2:0000340
xref: EHDAA:6002
xref: EMAPA:17749
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle
[Term]
id: UBERON:0006220
name: diencephalic part of interventricular foramen
subset: emapa_ehdaa2
xref: EHDAA2:0000384
xref: EHDAA:3476
xref: EMAPA:16643
xref: EMAPA:16901
xref: VHOG:0000808
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002286 ! third ventricle
[Term]
id: UBERON:0006222
name: future diencephalon
subset: emapa_ehdaa2
subset: vertebrate_core
xref: EFO:0003442
xref: EHDAA2:0000600
xref: EHDAA:844
xref: EMAPA:16514
xref: RETIRED_EHDAA2:0000386
xref: TAO:0000574
xref: ZFA:0000574
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_into UBERON:0001894
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: develops_into UBERON:0001894 ! diencephalon
relationship: develops_into UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0006223
name: dorsal meso-oesophagus
subset: emapa_ehdaa2
xref: EHDAA:2945
xref: EMAPA:16704
xref: EMAPA:16837
xref: EMAPA:18865
xref: MA:0001570
xref: RETIRED_EHDAA2:0000412
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0003283 ! mesentery of oesophagus
[Term]
id: UBERON:0006224
name: elbow joint primordium
subset: emapa_ehdaa2
xref: EHDAA2:0000431
xref: EHDAA:8483
xref: EMAPA:17710
is_a: UBERON:0001048 ! primordium
relationship: develops_into UBERON:0001490 ! elbow joint
relationship: part_of UBERON:0003318 ! mesenchyme of elbow
[Term]
id: UBERON:0006225
name: endocardial tissue
comment: consider merging with endocardium
subset: emapa_ehdaa2
xref: EMAPA:17868
xref: RETIRED_EHDAA2:0000435
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0006226
name: endolymphatic appendage
subset: emapa_ehdaa2
xref: EHDAA2:0000437
xref: EMAPA:16994
xref: EMAPA:17283
xref: VHOG:0000373
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0006227
name: ethmoid bone primordium
comment: Consider obsoleting, the ethmoid is endochondral
subset: emapa_ehdaa2
xref: EHDAA2:0000456
xref: EHDAA:8363
xref: EMAPA:18023
is_a: UBERON:0001048 ! primordium
relationship: develops_from UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest
relationship: develops_into UBERON:0001679 ! ethmoid bone
relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium
relationship: part_of UBERON:0011241 {source="AAO"} ! ethmoid region
[Term]
id: UBERON:0006228
name: exoccipital pre-cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0000457
xref: EHDAA:8355
xref: EMAPA:18014
xref: VHOG:0000963
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_into UBERON:0001693 ! exoccipital bone
relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium
[Term]
id: UBERON:0006230
name: extrinsic ocular pre-muscle mass
subset: emapa_ehdaa2
xref: EHDAA2:0000483
xref: EHDAA:2925
xref: EMAPA:17845
is_a: UBERON:0003314 ! eye mesenchyme
is_a: UBERON:0005865 ! pre-muscle condensation
is_a: UBERON:0006904 ! head mesenchyme from mesoderm
relationship: develops_from UBERON:0003314 {source="EHDAA2"} ! eye mesenchyme
relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle of eye
[Term]
id: UBERON:0006231
name: facial bone primordium
comment: Editor notes: check this for developmental relationships
subset: emapa_ehdaa2
synonym: "facial bones primordia" EXACT [EHDAA2:0000488]
synonym: "facial skeleton primordium" RELATED []
synonym: "viscerocranium primordium" RELATED []
xref: EHDAA2:0000488
xref: EHDAA:9552
xref: EMAPA:18024
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0007842 {source="EHDAA2"} ! membrane bone
relationship: part_of UBERON:0011156 {source="EHDAA2"} ! facial skeleton
[Term]
id: UBERON:0006232
name: facio-acoustic VII-VIII preganglion complex
subset: emapa_ehdaa2
xref: EHDAA:1477
xref: EMAPA:16660
xref: RETIRED_EHDAA2:0000496
xref: VHOG:0000715
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0005565 ! facio-acoustic neural crest
relationship: part_of UBERON:0001714 {source="EHDAA2"} ! cranial ganglion
[Term]
id: UBERON:0006233
name: female genital tubercle
subset: emapa_ehdaa2
xref: EHDAA:8118
xref: EMAPA:18680
xref: RETIRED_EHDAA2:0000500
xref: VHOG:0000666
is_a: UBERON:0011757 ! differentiated genital tubercle
relationship: part_of UBERON:0000474
intersection_of: UBERON:0011757 ! differentiated genital tubercle
intersection_of: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0006234
name: femur pre-cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0000508
xref: EMAPA:17502
xref: VHOG:0000951
is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation
relationship: develops_into UBERON:0000981 ! femur
[Term]
id: UBERON:0006235
name: foregut-midgut junction
subset: emapa_ehdaa2
xref: EHDAA2:0000569
xref: EHDAA:526
xref: EMAPA:16363
xref: VHOG:0000291
is_a: UBERON:0000015 ! anatomical boundary
relationship: adjacent_to UBERON:0001041
relationship: adjacent_to UBERON:0001045
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0001041 ! foregut
intersection_of: adjacent_to UBERON:0001045 ! midgut
relationship: adjacent_to UBERON:0001041 ! foregut
relationship: adjacent_to UBERON:0001045 ! midgut
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0006236
name: frontal bone primordium
subset: emapa_ehdaa2
xref: EHDAA2:0000577
xref: EHDAA:9540
xref: EMAPA:18017
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0006238
name: future brain
comment: Usage notes: this covers a variety of structures across Metazoa
subset: emapa_ehdaa2
subset: vertebrate_core
synonym: "presumptive brain" EXACT [ZFA:0000146]
xref: EFO:0003431
xref: EHDAA:300
xref: EHDAA:830
xref: EMAPA:16089
xref: EMAPA:16471
xref: RETIRED_EHDAA2:0000591
xref: TAO:0000146
xref: ZFA:0000146
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0000955 ! brain
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006239
name: future central tendon
subset: emapa_ehdaa2
xref: EHDAA2:0000593
xref: EHDAA:4118
xref: EMAPA:25035
is_a: UBERON:0000043 ! tendon
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_into UBERON:0006670
intersection_of: UBERON:0000043 ! tendon
intersection_of: develops_into UBERON:0006670 ! central tendon
relationship: develops_into UBERON:0006670 ! central tendon
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006240
name: future forebrain
comment: TODO. Add relationships to neural plate (both ZFA and EMAPA time this with the neural plate)
subset: emapa_ehdaa2
subset: vertebrate_core
synonym: "presumptive forebrain" EXACT [ZFA:0000062]
synonym: "prosencephalon" RELATED []
xref: EFO:0003423
xref: EHDAA2:0000661
xref: EHDAA:2643
xref: EMAPA:16640
xref: TAO:0000062
xref: ZFA:0000062
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_into UBERON:0001890 ! forebrain
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0006238 ! future brain
[Term]
id: UBERON:0006241
name: future spinal cord
subset: vertebrate_core
synonym: "presumptive spinal cord" EXACT [ZFA:0000417]
xref: EFO:0003438
xref: EHDAA2:0000674
xref: EHDAA:898
xref: EMAPA:16092
xref: EMAPA:16525
xref: EMAPA:16755
xref: TAO:0000417
xref: ZFA:0000417
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0001049 {source="EHDAA2"} ! neural tube
relationship: develops_into UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0006242
name: gall bladder primordium
subset: emapa_ehdaa2
xref: EHDAA2:0000700
xref: EHDAA:3047
xref: EMAPA:16713
xref: EMAPA:16842
xref: XAO:0004205
is_a: UBERON:0001048 ! primordium
relationship: develops_into UBERON:0002110 ! gallbladder
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002423 ! hepatobiliary system
relationship: part_of UBERON:0004912 ! biliary bud
[Term]
id: UBERON:0006243
name: glossopharyngeal IX preganglion
subset: emapa_ehdaa2
xref: EHDAA:1479
xref: EMAPA:16661
xref: RETIRED_EHDAA2:0000713
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001714 ! cranial ganglion
[Term]
id: UBERON:0006244
name: hip joint primordium
subset: emapa_ehdaa2
xref: EHDAA2:0000785
xref: EHDAA:8462
xref: EMAPA:17739
is_a: UBERON:0001048 ! primordium
relationship: develops_into UBERON:0001486 ! hip joint
relationship: part_of UBERON:0003320 ! mesenchyme of hip
[Term]
id: UBERON:0006245
name: humerus cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0000787
xref: EHDAA:6240
xref: EMAPA:17713
xref: VHOG:0001120
is_a: UBERON:0005258 ! upper arm mesenchyme
is_a: UBERON:0010883 ! forelimb bone cartilaginous condensation
relationship: develops_from UBERON:0006246 {source="EHDAA2"} ! humerus pre-cartilage condensation
relationship: develops_into UBERON:0000976 ! humerus
relationship: part_of UBERON:0001440 {source="EHDAA2"} ! forelimb skeleton
relationship: part_of UBERON:0005258 {source="EHDAA2"} ! upper arm mesenchyme
[Term]
id: UBERON:0006246
name: humerus pre-cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0000788
xref: EHDAA:4192
xref: EMAPA:17427
xref: VHOG:0000950
is_a: UBERON:0005258 ! upper arm mesenchyme
is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation
relationship: develops_into UBERON:0000976 ! humerus
relationship: part_of UBERON:0001440 {source="EHDAA2"} ! forelimb skeleton
relationship: part_of UBERON:0005258 {source="EHDAA2"} ! upper arm mesenchyme
[Term]
id: UBERON:0006247
name: iliac pre-cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0000809
xref: EHDAA:9568
xref: EMAPA:18029
xref: VHOG:0000964
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0010377 ! mesenchyme from somatopleure
relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme
relationship: part_of UBERON:0007832 {source="EHDAA2"} ! skeleton of pelvic girdle
[Term]
id: UBERON:0006248
name: incus pre-cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0000813
xref: EHDAA:9024
xref: EMAPA:17825
xref: VHOG:0000957
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0010042 {source="EHDAA2-generalized"} ! 1st arch mesenchyme
[Term]
id: UBERON:0006250
name: infundibular recess of 3rd ventricle
def: "The floor of the third ventricle is prolonged downward as a funnel-shaped recess, the infundibular recess, into the infundibulum, and to the apex of the latter the hypophysis or pititary is attached" [Wikipedia:Infundibular_recess]
comment: Editor note: in FMA this is a cavity, whereas in EHDAA2 it is an epithelial sac
synonym: "infundibular recess" EXACT [FMA:78456]
synonym: "recessus infundibularis" EXACT [FMA:TA]
synonym: "recessus infundibuli" EXACT [FMA:TA]
synonym: "recessus infundibuli" RELATED LATIN [Wikipedia:Infundibular_recess]
xref: EHDAA2:0000827
xref: EHDAA:4479
xref: EMAPA:16648
xref: EMAPA:16899
xref: FMA:78456
xref: http://upload.wikimedia.org/wikipedia/commons/7/75/Gray654.png
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0003309 {source="EHDAA2"} ! floor plate of diencephalon
relationship: part_of UBERON:0000007 {source="EHDAA2"} ! pituitary gland
[Term]
id: UBERON:0006251
name: interparietal bone primordium
subset: emapa_ehdaa2
xref: EHDAA2:0000881
xref: EMAPA:18018
is_a: UBERON:0001048 ! primordium
relationship: develops_into UBERON:0002229 ! interparietal bone
[Term]
id: UBERON:0006252
name: intersubcardinal venous anastomosis
subset: emapa_ehdaa2
xref: EHDAA2:0000883
xref: EHDAA:3452
xref: EMAPA:16828
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0004581 ! systemic venous system
[Term]
id: UBERON:0006253
name: intraretinal space
subset: emapa_ehdaa2
xref: EHDAA2:0000889
xref: EHDAA:4761
xref: EMAPA:16676
xref: EMAPA:17170
xref: VHOG:0000534
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010312 ! immature eye
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0006254
name: ischial cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0000890
xref: EHDAA:9570
xref: EMAPA:26930
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
is_a: UBERON:0010377 ! mesenchyme from somatopleure
relationship: develops_from UBERON:0006255 {source="EHDAA2"} ! ischial pre-cartilage condensation
relationship: part_of UBERON:0007832 {source="EHDAA2"} ! skeleton of pelvic girdle
[Term]
id: UBERON:0006255
name: ischial pre-cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0000891
xref: EHDAA:7153
xref: EMAPA:18348
xref: VHOG:0000962
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
is_a: UBERON:0010377 ! mesenchyme from somatopleure
relationship: part_of UBERON:0007832 {source="EHDAA2"} ! skeleton of pelvic girdle
[Term]
id: UBERON:0006256
name: knee joint primordium
subset: emapa_ehdaa2
xref: EHDAA2:0000897
xref: EHDAA:8467
xref: EMAPA:17740
is_a: UBERON:0001048 ! primordium
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_into UBERON:0001485 ! knee joint
relationship: part_of UBERON:0003321 ! mesenchyme of knee
[Term]
id: UBERON:0006257
name: laryngo-tracheal groove
subset: emapa_ehdaa2
xref: EHDAA2:0004073
xref: EMAPA:16739
xref: RETIRED_EHDAA2:0000909
xref: SCTID:361426003
xref: VHOG:0001404
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001558 ! lower respiratory tract
[Term]
id: UBERON:0006258
name: lateral plate mesenchyme
comment: Editors note: todo - merge with LP mesoderm, review mesoderm/mesenchyme terminology
subset: emapa_ehdaa2
xref: EHDAA2:0000919
xref: EHDAA:379
xref: EMAPA:16179
is_a: UBERON:0003104 {source="Obol"} ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0003081 {source="Obol"} ! lateral plate mesoderm
[Term]
id: UBERON:0006259
name: lens pit
def: "a pitlike depression in the ectoderm of the lens placode where the primordial lens is developing[TFD]." [http://medical-dictionary.thefreedictionary.com/lens+pit]
subset: emapa_ehdaa2
xref: EHDAA2:0000981
xref: EHDAA:3809
xref: EMAPA:16799
xref: ncithesaurus:Lens_Pit
xref: VHOG:0000806
is_a: UBERON:0010312 ! immature eye
relationship: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000965 ! lens of camera-type eye
[Term]
id: UBERON:0006260
name: lingual swellings
comment: the collection consisting of the two lateral swellings and the medial swelling
subset: emapa_ehdaa2
synonym: "lingual swelling" RELATED [EHDAA2:0000996]
xref: EHDAA2:0000996
xref: EMAPA:17186
xref: VHOG:0000449
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0004362 ! pharyngeal arch 1
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue
[Term]
id: UBERON:0006261
name: male genital tubercle
subset: emapa_ehdaa2
xref: EHDAA:8138
xref: EMAPA:17969
xref: RETIRED_EHDAA2:0001048
xref: VHOG:0000667
is_a: UBERON:0011757 ! differentiated genital tubercle
relationship: part_of UBERON:0000079
intersection_of: UBERON:0011757 ! differentiated genital tubercle
intersection_of: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0006262
name: malleus pre-cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0001055
xref: EHDAA:9026
xref: EMAPA:17826
xref: VHOG:0000958
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0003107 {source="EHDAA2"} ! Meckel's cartilage
[Term]
id: UBERON:0006263
name: Meckel's cartilage pre-cartilage condensation
comment: Development notes: NC contributes in EHDAA2. Todo: use EHDAA2 structure
subset: emapa_ehdaa2
xref: EHDAA2:0001074
xref: EMAPA:17358
xref: VHOG:0001121
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: develops_from UBERON:0006905 {source="EHDAA2"} ! mandibular process mesenchyme
relationship: develops_into UBERON:0003107 ! Meckel's cartilage
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006264
name: mouth-foregut junction
subset: emapa_ehdaa2
xref: EHDAA:534
xref: EMAPA:16258
xref: RETIRED_EHDAA2:0001205
xref: VHOG:0000592
is_a: UBERON:0000015 ! anatomical boundary
relationship: adjacent_to UBERON:0000165
relationship: adjacent_to UBERON:0001041
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0000165 ! mouth
intersection_of: adjacent_to UBERON:0001041 ! foregut
relationship: adjacent_to UBERON:0000165 ! mouth
relationship: adjacent_to UBERON:0001041 ! foregut
relationship: part_of UBERON:0005409 ! gastrointestinal system
[Term]
id: UBERON:0006265
name: mural trophectoderm
def: "Trophectoderm that surrounds blastocyst cavity." [PMID:16341078]
subset: early_development
subset: emapa_ehdaa2
xref: EHDAA2:0001206
xref: EHDAA:58
xref: EMAPA:16047
xref: VHOG:0000597
is_a: UBERON:0000478 ! extraembryonic structure
relationship: part_of UBERON:0004345 {source="EMAPA"} ! trophectoderm
relationship: part_of UBERON:0004345 ! trophectoderm
relationship: surrounds UBERON:0000090 ! blastocele
[Term]
id: UBERON:0006266
name: nasolacrimal groove
def: "On the nasal surface of the body of the maxilla, in front of the opening of the sinus is a deep groove, the lacrimal groove (or lacrimal sulcus), which is converted into the nasolacrimal canal, by the lacrimal bone and inferior nasal concha; this canal opens into the inferior meatus of the nose and transmits the nasolacrimal duct." [Wikipedia:Lacrimal_groove]
subset: emapa_ehdaa2
synonym: "s. lacrimalis maxillae" RELATED LATIN [Wikipedia:Lacrimal_groove]
xref: EHDAA2:0001238
xref: EHDAA:4770
xref: EMAPA:16679
xref: http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray163.png
xref: ncithesaurus:Nasolacrimal_Groove
xref: VHOG:0001307
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006267
name: notochordal plate
def: "The notochordal plate is the dorsal part of the notochordal process when the ventral portion breaks down. It is continuous laterally with the endoderm that composes the roof of the primitive foregut and is in contact dorsally with the neural tube. The folding off of the notochordal plate gives rise to the notochord." [VHOG:0001212]
comment: TODO - check ordering; awaiting confirmation from JB
subset: emapa_ehdaa2
xref: EHDAA2:0001278
xref: EHDAA:264
xref: EMAPA:16101
xref: ncithesaurus:Notochordal_Plate
xref: VHOG:0001212
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0006268 {source="EHDAA2"} ! notochordal process
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006268
name: notochordal process
def: "a midline cellular cord formed from the migration of mesenchymal cells from the primitive knot" [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/05embryonicperiod.htm]
comment: The notochordal process grows cranially until it reaches the prechordal plate, the future site of the mouth. In this area the ectoderm is attached directly to the endoderm without intervening mesoderm. This area is known as the oropharyngeal membrane, and it will break down to become the mouth. At the other end of the primitive streak the ectoderm is also fused directly to the endoderm; this is known as the cloacal membrane (proctodeum), or primordial anus.
subset: emapa_ehdaa2
synonym: "chordamesoderm" RELATED []
synonym: "presumptive notochord" RELATED []
xref: EHDAA2:0001279
xref: EHDAA:224
xref: EMAPA:16102
xref: ncithesaurus:Notochordal_Process
xref: VHOG:0001213
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0000924 {source="EHDAA2"} ! ectoderm
[Term]
id: UBERON:0006269
name: optic foramen
subset: emapa_ehdaa2
xref: EHDAA2:0001312
xref: EHDAA:10646
xref: EMAPA:18716
xref: VHOG:0001408
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0006270
name: optic pit
subset: emapa_ehdaa2
xref: EHDAA:944
xref: EMAPA:16325
xref: RETIRED_EHDAA2:0001316
xref: VHOG:0001162
is_a: UBERON:0010312 ! immature eye
relationship: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006271
name: orbital fissure
subset: emapa_ehdaa2
xref: EHDAA2:0001328
xref: EHDAA:10648
xref: EMAPA:18717
xref: SCTID:280546005
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0006272
name: oronasal cavity
def: "In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity" [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html]
subset: emapa_ehdaa2
xref: EHDAA2:0001331
xref: EHDAA:5882
xref: EMAPA:17200
xref: VHOG:0001352
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: developmentally_replaces UBERON:0009672 ! oronasal membrane
relationship: part_of UBERON:0000166 ! oral opening
[Term]
id: UBERON:0006273
name: otic pit
subset: emapa_ehdaa2
xref: EHDAA2:0001336
xref: EHDAA:929
xref: EMAPA:16536
xref: ncithesaurus:Otic_Pit
xref: VHOG:0001147
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006274
name: parietal bone primordium
subset: emapa_ehdaa2
xref: EHDAA2:0001404
xref: EHDAA:9544
xref: EMAPA:18019
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006275
name: pericardio-peritoneal canal
subset: emapa_ehdaa2
xref: EHDAA2:0001440
xref: EHDAA:636
xref: EMAPA:16282
xref: ncithesaurus:Pericardioperitoneal_Canal
xref: SCTID:361428002
xref: VHOG:0001498
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0006276
name: perioptic mesenchyme
subset: emapa_ehdaa2
xref: EHDAA:4751
xref: EMAPA:17167
xref: RETIRED_EHDAA2:0001444
is_a: UBERON:0010312 ! immature eye
relationship: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006277
name: pleuropericardial canals
subset: emapa_ehdaa2
xref: EHDAA2:0001479
xref: EHDAA:4122
xref: EMAPA:17704
xref: VHOG:0001497
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006278
name: pleuropericardial folds
subset: emapa_ehdaa2
xref: EHDAA2:0001480
xref: EHDAA:4126
xref: EMAPA:17706
xref: VHOG:0001499
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006279
name: pleuroperitoneal canal
subset: emapa_ehdaa2
xref: EHDAA2:0001481
xref: EHDAA:4128
xref: EMAPA:17707
xref: EMAPA:25031
xref: SCTID:361413002
xref: VHOG:0001505
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006280
name: polar trophectoderm
def: "Trophectoderm that surrounds the inner cell mass (ICM)." [PMID:16341078]
subset: early_development
subset: emapa_ehdaa2
xref: EHDAA2:0001484
xref: EHDAA:60
xref: EMAPA:16048
xref: VHOG:0000980
is_a: UBERON:0000478 ! extraembryonic structure
relationship: adjacent_to UBERON:0000087 ! inner cell mass
relationship: develops_from UBERON:0004345 {source="EHDAA2"} ! trophectoderm
relationship: part_of UBERON:0004345 {source="EMAPA"} ! trophectoderm
[Term]
id: UBERON:0006281
name: pre-hepatic part
subset: emapa_ehdaa2
xref: EHDAA:8701
xref: EMAPA:18422
xref: RETIRED_EHDAA2:0001492
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006282
name: primary head vein
subset: emapa_ehdaa2
xref: EHDAA2:0001498
xref: EHDAA:818
xref: EMAPA:16242
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004581 ! systemic venous system
relationship: part_of UBERON:0004582 ! venous system
[Term]
id: UBERON:0006283
name: primitive ventricle of heart
subset: emapa_ehdaa2
synonym: "primitive ventricle" EXACT [EHDAA2:0001531]
xref: EHDAA2:0001531
xref: EMAPA:16233
xref: EMAPA:16350
xref: SCTID:361524003
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0005498 {source="EMAPA"} ! primitive heart tube
[Term]
id: UBERON:0006284
name: prosencephalic vesicle
comment: todo - all vesicles
subset: emapa_ehdaa2
xref: EHDAA2:0001571
xref: EHDAA:1356
xref: EMAPA:16521
xref: VHOG:0000644
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006285
name: pubic pre-cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0001574
xref: EHDAA:9572
xref: EMAPA:18349
xref: EMAPA:26928
xref: VHOG:0000965
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
is_a: UBERON:0010377 ! mesenchyme from somatopleure
relationship: part_of UBERON:0007832 {source="EHDAA2"} ! skeleton of pelvic girdle
[Term]
id: UBERON:0006286
name: radius cartilage condensation
xref: EHDAA2:0001585
xref: EHDAA:7267
xref: EMAPA:18054
xref: VHOG:0001318
is_a: UBERON:0003327 ! mesenchyme of forearm
is_a: UBERON:0010883 ! forelimb bone cartilaginous condensation
relationship: develops_into UBERON:0001423
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0001423 ! radius bone
relationship: develops_into UBERON:0001423 ! radius bone
relationship: part_of UBERON:0003327 {source="EHDAA2"} ! mesenchyme of forearm
relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton
[Term]
id: UBERON:0006287
name: radius-ulna pre-cartilage condensation
comment: AO notes: EMAPA has a separate radius-ulna cartilage condensation.
xref: EHDAA2:0001587
xref: EHDAA:4178
xref: EMAPA:17420
xref: VHOG:0000949
is_a: UBERON:0003327 ! mesenchyme of forearm
is_a: UBERON:0005866 ! pre-cartilage condensation
relationship: part_of UBERON:0003327 ! mesenchyme of forearm
[Term]
id: UBERON:0006288
name: rib cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0001716
xref: EHDAA:8347
xref: EMAPA:17678
xref: VHOG:0001122
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
relationship: develops_from UBERON:0006289 {source="EHDAA2"} ! rib pre-cartilage condensation
relationship: develops_into UBERON:0002228 ! rib
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0006289
name: rib pre-cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0001717
xref: EHDAA:6026
xref: EMAPA:17397
xref: VHOG:0000681
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_from UBERON:0003089 {source="ZFA", source="EHDAA2-abduced"} ! sclerotome
relationship: develops_into UBERON:0002228 ! rib
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0006290
name: scapula cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0001777
xref: EHDAA:8368
xref: EMAPA:18343
xref: VHOG:0001125
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
relationship: develops_from UBERON:0006291 {source="EHDAA2"} ! scapula pre-cartilage condensation
relationship: develops_into UBERON:0006849 ! scapula
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0007831 {source="EHDAA2"} ! skeleton of pectoral girdle
[Term]
id: UBERON:0006291
name: scapula pre-cartilage condensation
comment: Development notes: the scapula has been shown to develop from multiple tissues, such as the dermomyotome of the somites, the mesodermal portion of the soma- topleure (a domain of the lateral plate mesoderm or LPM) and neural crest cell-derived mesenchyme (Huang et al., 2000; Matsuoka et al., 2005; Wang et al., 2005).[PMID:21455939]
subset: emapa_ehdaa2
xref: EHDAA2:0001778
xref: EHDAA:6041
xref: EMAPA:18027
xref: VHOG:0000960
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme
relationship: develops_into UBERON:0006849 ! scapula
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0007831 {source="EHDAA2"} ! skeleton of pectoral girdle
[Term]
id: UBERON:0006292
name: shoulder joint primordium
comment: Note that this is part of the forelimb skeleton in EHDAA2, but this violates part-disjointness
subset: emapa_ehdaa2
xref: EHDAA2:0001836
xref: EHDAA:8493
xref: EMAPA:17712
is_a: UBERON:0003322 ! mesenchyme of shoulder
is_a: UBERON:0005856 {source="EHDAA2"} ! developing mesenchymal condensation
relationship: develops_from UBERON:0003322 {source="EHDAA2"} ! mesenchyme of shoulder
relationship: develops_into UBERON:0001470 ! glenohumeral joint
relationship: part_of UBERON:0003322 ! mesenchyme of shoulder
[Term]
id: UBERON:0006293
name: spleen primordium
def: "A dense syncitial-like mesenchymal thickening in the dorsal mesogastrium." [ISBN:0123747295]
comment: todo - check difference between splenic and spleen in EMAPA
synonym: "left spleen primordium" NARROW [XAO:0000326]
synonym: "splenic primordium" EXACT [EHDAA2:0001904]
xref: EHDAA2:0001904
xref: EHDAA:3003
xref: EMAPA:18535
xref: EMAPA:18659
xref: XAO:0000326
is_a: UBERON:0001048 {source="XAO"} ! primordium
relationship: develops_from UBERON:0004872 {source="XAO"} ! splanchnic layer of lateral plate mesoderm
relationship: part_of UBERON:0005602 {source="EHDAA2-modified"} ! dorsal mesogastrium
[Term]
id: UBERON:0006294
name: stapes pre-cartilage condensation
comment: independent of the mesenchymal condensation that will form the otic capsule
subset: emapa_ehdaa2
synonym: "stapedial anlage" EXACT [doi:10.1111/j.1469-7580.2005.00441.x]
xref: EHDAA2:0001910
xref: EHDAA:5699
xref: EMAPA:17827
xref: VHOG:0000956
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
is_a: UBERON:0009506 ! associated mesenchyme of middle ear
relationship: develops_from UBERON:0005689 {source="EHDAA2", source="doi:10.1111/j.1469-7580.2005.00441.x", notes="cranial end"} ! 2nd arch mesenchyme
relationship: part_of UBERON:0001686 {source="EHDAA2"} ! auditory ossicle
[Term]
id: UBERON:0006295
name: sternebral bone pre-cartilage condensation
subset: emapa_ehdaa2
xref: EHDAA2:0001912
xref: EHDAA:9565
xref: EMAPA:18345
xref: VHOG:0000961
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme
relationship: part_of UBERON:0000975 ! sternum
[Term]
id: UBERON:0006296
name: subcardinal vein
subset: emapa_ehdaa2
xref: EHDAA2:0001932
xref: EHDAA:2631
xref: EMAPA:16829
xref: ncithesaurus:Subcardinal_Vein
xref: SCTID:308830006
xref: VHOG:0001336
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004581 ! systemic venous system
relationship: part_of UBERON:0004582 ! venous system
[Term]
id: UBERON:0006297
name: sublingual gland primordium
subset: emapa_ehdaa2
xref: EHDAA2:0001935
xref: EHDAA:7989
xref: EMAPA:17752
is_a: UBERON:0001048 ! primordium
relationship: develops_into UBERON:0001832 ! sublingual gland
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001044 ! salivary gland
[Term]
id: UBERON:0006298
name: submandibular gland primordium
subset: emapa_ehdaa2
xref: EHDAA2:0001939
xref: EHDAA:9255
xref: EMAPA:17755
is_a: UBERON:0001048 ! primordium
relationship: develops_into UBERON:0001736 ! submandibular gland
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001044 ! salivary gland
[Term]
id: UBERON:0006300
name: supracardinal vein
def: "Either of two veins in the mammalian embryo and various adult lower vertebrate forms located in the thoracic and abdominal regions dorsolateral to and on either side of the descending aorta and giving rise to the azygos and hemiazygos veins and a part of the inferior vena cava[MW]. These veins drain the body wall via the segmental intercostal veins, thus taking over the function of the posterior cardinals[ISBN]" [http://www.merriam-webster.com/medical/supracardinal%20vein, ISBN-10:0443065837]
subset: emapa_ehdaa2
xref: EHDAA2:0001964
xref: EHDAA:7492
xref: EMAPA:16830
xref: ncithesaurus:Supracardinal_Vein
xref: SCTID:308829001
is_a: UBERON:0001638 ! vein
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004581 ! systemic venous system
[Term]
id: UBERON:0006301
name: telencephalic part of interventricular foramen
subset: emapa_ehdaa2
xref: EHDAA2:0001980
xref: EHDAA:5474
xref: EMAPA:16654
xref: EMAPA:16915
xref: VHOG:0000809
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0006303
name: tracheal diverticulum
subset: emapa_ehdaa2
xref: EMAPA:16740
xref: RETIRED_EHDAA2:0002072
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006304
name: trigeminal V preganglion
subset: emapa_ehdaa2
xref: EHDAA:924
xref: EMAPA:16663
xref: RETIRED_EHDAA2:0002089
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0001714 ! cranial ganglion
[Term]
id: UBERON:0006305
name: tunica vasculosa lentis
def: "an extensive capillary network, spreading over the posterior and lateral surfaces of the lens of the eye. It disappears shortly after birth." [Wikipedia:Tunica_vasculosa_lentis]
subset: emapa_ehdaa2
xref: EHDAA2:0002097
xref: EHDAA:5705
xref: EMAPA:18235
xref: VHOG:0000978
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010312 ! immature eye
relationship: part_of UBERON:0005607 ! hyaloid vascular plexus
[Term]
id: UBERON:0006306
name: ulna cartilage condensation
xref: EHDAA2:0002098
xref: EHDAA:7269
xref: EMAPA:18055
xref: VHOG:0001155
is_a: UBERON:0003327 ! mesenchyme of forearm
is_a: UBERON:0010883 ! forelimb bone cartilaginous condensation
relationship: develops_into UBERON:0001424
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0001424 ! ulna
relationship: develops_into UBERON:0001424 ! ulna
relationship: part_of UBERON:0003327 ! mesenchyme of forearm
relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton
[Term]
id: UBERON:0006307
name: urogenital membrane
comment: During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html]
subset: emapa_ehdaa2
xref: EHDAA2:0004025
xref: EHDAA:7011
xref: EMAPA:17210
xref: EMAPA:17378
xref: RETIRED_EHDAA2:0002141
xref: SCTID:172994001
xref: VHOG:0001187
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0006554 ! urinary system structure
relationship: develops_from UBERON:0006217 {source="EHDAA2"} ! cloacal membrane
relationship: part_of UBERON:0001008 {source="EHDAA2"} ! excretory system
relationship: part_of UBERON:0004122 ! genitourinary system
[Term]
id: UBERON:0006308
name: vagal X nerve trunk
subset: emapa_ehdaa2
xref: EHDAA2:0002160
xref: EHDAA:4659
xref: EMAPA:17272
xref: VHOG:0000736
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002464 ! nerve trunk
relationship: part_of UBERON:0004293 ! parasympathetic nerve
[Term]
id: UBERON:0006309
name: venous vitelline plexus
subset: emapa_ehdaa2
xref: EHDAA:1945
xref: EMAPA:17020
xref: RETIRED_EHDAA2:0002172
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0004581 ! systemic venous system
relationship: part_of UBERON:0004582 ! venous system
[Term]
id: UBERON:0006310
name: vitelline venous plexus
subset: emapa_ehdaa2
xref: EHDAA2:0002210
xref: EHDAA:1945
xref: EMAPA:17020
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0004581 ! systemic venous system
relationship: part_of UBERON:0004582 ! venous system
[Term]
id: UBERON:0006311
name: chamber of eyeball
def: "Chamber of eyeball[FMA]" [FMA:58071]
synonym: "eye chamber" EXACT [MA:0002459]
synonym: "eyeball chamber" EXACT [FMA:58071]
xref: BTO:0002085
xref: FMA:58071
xref: MA:0002459
xref: ncithesaurus:Chamber_of_the_Eye
xref: SCTID:280540004
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0006312
name: ocular refractive media
xref: MA:0001911
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0006314
name: bodily fluid
def: "Liquid components of living organisms. includes fluids that are excreted or secreted from the body as well as body water that normally is not." [MESH:A.12.207, Wikipedia:Body_fluid]
comment: consider merging with parent class
synonym: "body fluid" EXACT [GAID:266]
xref: GAID:266
xref: galen:BodyFluid
xref: MESH:A.12.207
xref: NIF_GrossAnatomy:birnlex_20
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0006318
name: orbitalis muscle
def: "An orbitalis muscle is a rudimentary nonstriated muscle (smooth muscle) that crosses from the infraorbital groove and sphenomaxillary fissure and intimately united with the periosteum of the orbit. It is often called Muller's muscle. One characteristic of Horner's Syndrome is enophthalmos (retraction of the eyeball into the orbit due to paralysis of the orbitalis muscle that spans the inferior orbital fissure). Its function is eyeball protrusion." [Wikipedia:Orbitalis_muscle]
comment: subclass of 'muscle layer' in FMA
synonym: "musculus orbitalis" EXACT [FMA:49034, FMA:TA]
synonym: "musculus orbitalis" RELATED LATIN [Wikipedia:Orbitalis_muscle]
synonym: "orbital muscle" EXACT [FMA:49034]
synonym: "orbital muscle of muller" EXACT [FMA:49034]
synonym: "orbitalis" EXACT [FMA:49034]
synonym: "orbitalis" RELATED [Wikipedia:Orbitalis_muscle]
xref: FMA:49034
xref: MA:0001274
xref: ncithesaurus:Orbitalis_Muscle
xref: SCTID:368790005
is_a: UBERON:0003660 ! eyelid muscle
is_a: UBERON:0006660 ! muscle layer
[Term]
id: UBERON:0006319
name: spinal cord reticular nucleus
synonym: "spinal reticular nucleus" EXACT [FMA:73909]
xref: FMA:73909
xref: MA:0001123
is_a: UBERON:0000125 ! neural nucleus
is_a: UBERON:0001948 ! regional part of spinal cord
is_a: UBERON:0002315 ! gray matter of spinal cord
relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord
[Term]
id: UBERON:0006320
name: inferior oblique extraocular muscle
def: "thin, narrow muscle placed near the anterior margin of the floor of the orbit." [Wikipedia:Inferior_oblique_muscle]
comment: Taxon notes (via VHOG): "The ability to rotate the eyeball is common to all vertebrates with well-developed eyes, regardless of the habitat in which they live, so these [extrinsic ocular] muscles tend to be conservative. They change little during the course of evolution." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.331
subset: vertebrate_core
synonym: "inferior oblique" EXACT [FMA:49040]
synonym: "inferior oblique muscle" EXACT []
synonym: "musculus obliquus inferior bulbi" EXACT [Wikipedia:Inferior_oblique_muscle]
synonym: "musculus obliquus inferior bulbi" RELATED LATIN [Wikipedia:Inferior_oblique_muscle]
synonym: "obliquus inferior" EXACT [FMA:49040]
synonym: "obliquus oculi inferior" EXACT [Wikipedia:Inferior_oblique_muscle]
xref: FMA:49040
xref: http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png
xref: MA:0001276
xref: ncithesaurus:Inferior_Oblique_Muscle
xref: SCTID:181156006
xref: TAO:0000861
xref: VHOG:0001132
xref: ZFA:0000861
is_a: UBERON:0006532 {source="MA"} ! oblique extraocular muscle
relationship: has_muscle_insertion UBERON:0001603 {notes="laterally onto the eyeball deep to the lateral rectus by a short flat tendon", source="dbpedia"} ! lateral rectus extra-ocular muscle
relationship: has_muscle_nerve UBERON:0001643 {source="dbpedia"} ! oculomotor nerve
relationship: has_muscle_origin UBERON:0002397 {notes="orbital surface of the maxilla lateral to the lacrimal groove", source="dbpedia"} ! maxilla
[Term]
id: UBERON:0006321
name: superior oblique extraocular muscle
def: "The superior oblique muscle, or obliquus oculi superior, is a fusiform muscle in the upper, medial side of the orbit whose primary action is downward, lateral rotation of the eye. One of the extraocular muscles, the superior oblique is the only muscle innervated by the trochlear nerve (the fourth cranial nerve)." [Wikipedia:Superior_oblique_muscle]
subset: vertebrate_core
synonym: "M. obliquus superior" RELATED [Wikipedia:Superior_oblique_muscle]
synonym: "musculus obliquus superior" EXACT [AAO:0010119]
synonym: "musculus obliquus superior bulbi" RELATED LATIN [Wikipedia:Superior_oblique_muscle]
synonym: "obliquus oculi superior" RELATED [Wikipedia:Superior_oblique_muscle]
synonym: "obliquus superior" EXACT [FMA:49039]
synonym: "superior oblique" EXACT [FMA:49039]
synonym: "superior oblique muscle" EXACT []
xref: AAO:0010119
xref: FMA:49039
xref: http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png
xref: MA:0001277
xref: ncithesaurus:Superior_Oblique_Muscle
xref: SCTID:181155005
xref: TAO:0000738
xref: VHOG:0001131
xref: ZFA:0000738
property_value: UBPROP:0000001 "Cranial nerve IV innervated; dorsal in the obliquus group.[AAO]" xsd:string
is_a: UBERON:0006532 {source="MA"} ! oblique extraocular muscle
relationship: has_muscle_insertion UBERON:0010230 {notes="Outer posterior quadrant of the eyeball", source="dbpedia"} ! eyeball of camera-type eye
relationship: has_muscle_nerve UBERON:0001644 {source="dbpedia"} ! trochlear nerve
[Term]
id: UBERON:0006322
name: inferior rectus extraocular muscle
def: "a muscle in the orbit that depresses, adducts, and helps extort (rotate laterally) the eye. The inferior rectus muscle is the only muscle that is capable of depressing the pupil when it is in a fully abducted position." [Wikipedia:Inferior_rectus_muscle]
subset: vertebrate_core
synonym: "inferior rectus" EXACT [FMA:49036]
synonym: "inferior rectus muscle" EXACT []
synonym: "musculus rectus inferior bulbi" RELATED LATIN [Wikipedia:Inferior_rectus_muscle]
xref: FMA:49036
xref: http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png
xref: MA:0001279
xref: ncithesaurus:Inferior_Rectus_Muscle
xref: SCTID:181154009
xref: TAO:0000457
xref: VHOG:0001130
xref: ZFA:0000457
is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle
[Term]
id: UBERON:0006323
name: superior rectus extraocular muscle
def: "The superior rectus muscle is a muscle in the orbit. It is one of the extraocular muscles. It is innervated by the superior division of the oculomotor nerve (Cranial Nerve III). In the primary position (looking straight ahead), the superior rectus muscle's primary function is elevation, although it also contributes to intorsion and adduction." [Wikipedia:Superior_rectus_muscle]
subset: vertebrate_core
synonym: "musculus rectus superior bulbi" RELATED LATIN [Wikipedia:Superior_rectus_muscle]
synonym: "superior rectus" EXACT [FMA:49035]
synonym: "superior rectus muscle" EXACT []
xref: FMA:49035
xref: http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png
xref: MA:0001282
xref: ncithesaurus:Superior_Rectus_Muscle
xref: SCTID:181153003
xref: TAO:0000345
xref: VHOG:0001128
xref: ZFA:0000345
is_a: UBERON:0006533 {source="MA"} ! rectus extraocular muscle
relationship: has_muscle_nerve UBERON:0001643 {source="dbpedia"} ! oculomotor nerve
[Term]
id: UBERON:0006325
name: laryngeal intrinsic ligament
synonym: "intrinsic ligament of larynx" EXACT [FMA:72058]
xref: FMA:72058
xref: MA:0001757
xref: SCTID:279557001
is_a: UBERON:0001743 ! ligament of larynx
[Term]
id: UBERON:0006326
name: base of arytenoid
synonym: "arytenoid cartilage base" EXACT [FMA:55349]
synonym: "base of arytenoid" EXACT [FMA:55349]
synonym: "base of arytenoid cartilage" EXACT [FMA:55349]
xref: FMA:55349
xref: MA:0001761
xref: SCTID:279532006
is_a: UBERON:0001994 ! hyaline cartilage
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003583 ! larynx connective tissue
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001740 ! arytenoid cartilage
[Term]
id: UBERON:0006327
name: laryngeal extrinsic muscle
synonym: "extrinsic muscle of larynx" EXACT [FMA:55225]
xref: FMA:55225
xref: MA:0001769
xref: SCTID:244808004
is_a: UBERON:0001568 ! muscle of larynx
[Term]
id: UBERON:0006328
name: laryngeal intrinsic muscle
synonym: "intrinsic laryneal muscles" RELATED [FEED:FEED]
synonym: "intrinsic laryngeal muscle" EXACT [FEED:FEED]
synonym: "intrinsic muscle of larynx" EXACT [FMA:55226]
xref: FMA:55226
xref: MA:0001770
xref: SCTID:244810002
property_value: UBPROP:0000001 "each muscle listed separately.[FEED]" xsd:string
is_a: UBERON:0001568 ! muscle of larynx
[Term]
id: UBERON:0006329
name: superior pharyngeal constrictor
def: "The superior pharyngeal constrictor muscle is a quadrilateral muscle, thinner and paler than the inferior pharyngeal constrictor muscle and middle pharyngeal constrictor muscle. [WP,unvetted]." [Wikipedia:Superior_pharyngeal_constrictor_muscle]
synonym: "constrictor muscle of pharynx superior" EXACT [FMA:46621]
synonym: "musculus constrictor pharyngis superior" EXACT [FMA:46621, FMA:TA]
synonym: "musculus constrictor pharyngis superior" RELATED LATIN [Wikipedia:Superior_pharyngeal_constrictor_muscle]
synonym: "superior constrictor" EXACT [FMA:46621]
synonym: "superior constrictor muscle" EXACT [ncithesaurus:Superior_Constrictor_Muscle]
synonym: "superior constrictor of pharynx" EXACT [FMA:46621]
synonym: "superior constrictor pharyngeus" EXACT [FMA:46621]
xref: EMAPA:18966
xref: FMA:46621
xref: http://upload.wikimedia.org/wikipedia/commons/a/ac/Musculusconstrictorpharyngissuperior.png
xref: MA:0002280
xref: ncithesaurus:Superior_Constrictor_Muscle
xref: SCTID:244800006
property_value: UBPROP:0000001 "The superior constrictor is a muscle that is an integral part of the pharyngeal tube that is attached to the mandible, pterygomandibular raphe, basioccipital bone, pterygoid process and midline raphe and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED]" xsd:string
is_a: UBERON:0001569 ! constrictor muscle of pharynx
relationship: has_muscle_origin UBERON:0004527 {source="dbpedia"} ! alveolar process of maxilla
[Term]
id: UBERON:0006330
name: anterior lingual gland
synonym: "anterior lingual salivary gland" EXACT [FMA:59796]
synonym: "lingual salivary gland" EXACT [FMA:59796]
xref: FMA:59796
xref: MA:0002701
xref: ncithesaurus:Lingual_Salivary_Gland
xref: SCTID:362179003
is_a: UBERON:0001830 ! minor salivary gland
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0006331
name: brainstem nucleus
xref: MA:0000821
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0002298
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0002298 ! brainstem
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0006332
name: nasal capsule
def: "an embryonic cartilaginous frame, the nasal capsule, an evolutionary-conserved structure composed of ventral and dorsal components: the mesethmoid and ectethmoid cartilages, respectively.[PMID]." [PMID:21270050]
comment: Taxon notes: In most mammals, the nasal capsule remains unossified, except in mammals where the ethmoid portion ossifies to form the turbinates[Kardong]. In avians, the mesethmoid supports upper beak formation, whereas the ectethmoid comprises elements of the olfactory system, including the lamina cribosa, the crista galli apophysis and the conchae. Editor's note - consider splitting this class. Developing cartilage in mammals? Connective tissue sheath in TAO. Structure that has both respiratory and olfactory functions and lies anterior to the braincase, in the foremost section of the cranium[AAO]. Cartilaginous envelope containing the nasal organ[FishBase] Multi-tissue structure composed of connective tissue that surrounds, the internal portions of the olfactory epithelium[ZFA]. Avian def: The nasal capsule is dorsoventrally divided into two parts: the upper part, the ectethmoid, serves olfaction and is composed of the lamina cribosa, the crista galli apophysis and the conchae. The lower part, the mesethmoid, is a thick cartilage bar extending from the corpus sphenoidalis to the rostral extremity of the nose (Fig. 1A-B). In the avian embryo, the mesethmoid constitutes the cartilage primordium of the upper beak
subset: vertebrate_core
synonym: "cartilaginous nasal capsule" RELATED []
xref: AAO:0000313
xref: EMAPA:17852
xref: MA:0000283
xref: TAO:0002035
xref: ZFA:0005507
property_value: UBPROP:0000001 "Multi-tissue structure that is the connective tissue sheath that surrounds, except for external opening(s) in adult, the olfactory epithelium.[TAO]" xsd:string
property_value: UBPROP:0000001 "Structure that has both respiratory and olfactory functions and lies anterior to the braincase, in the foremost section of the cranium.[AAO]" xsd:string
is_a: UBERON:0001823 ! nasal cartilage
relationship: part_of UBERON:0000004 {source="MA"} ! olfactory apparatus
[Term]
id: UBERON:0006333
name: snout
def: "Surface structure that is the region of the head in front of and between the orbits, and above the lower jaw. Nares are located on the snout." [ZFA:0005496]
subset: vertebrate_core
synonym: "muzzle" RELATED [MA:0001910]
xref: MA:0001910
xref: SCTID:41127006
xref: TAO:0001712
xref: ZFA:0005496
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0006334
name: posterior lateral line
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFA:0000944]
comment: check XAO/AAO
subset: dubious_grouping
synonym: "pll" EXACT [ZFA:0000944]
xref: AAO:0011024
xref: EFO:0003595
xref: TAO:0000944
xref: XAO:0000465
xref: ZFA:0000944
property_value: UBPROP:0000001 "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from posterior lateral line primordium (TAO:0001157)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of posterior lateral line system (TAO:0001471)[TAO]" xsd:string
is_a: UBERON:0010202 ! lateral line
[Term]
id: UBERON:0006336
name: unspecified
is_obsolete: true
[Term]
id: UBERON:0006337
name: distal early tubule
def: "Portion of the renal tubule which is just posterior to the proximal straight tubule." [ZFA:0005293]
comment: in XAO this is pronephric; in ZFA it is an adult structure. we treat it here as generic. consider placing XAO under proneprhic subclass. check relationship with EDCT.
subset: vertebrate_core
xref: AAO:0011034
xref: EMAPA:27788
xref: EMAPA:28007
xref: EMAPA:28390
xref: TAO:0005293
xref: XAO:0000287
xref: ZFA:0005293
property_value: UBPROP:0000001 "Portion of the pronephric tubule that is immediately posterior to the late proximal tubule.[AAO]" xsd:string
is_a: UBERON:0007685 ! region of nephron tubule
[Term]
id: UBERON:0006338
name: lateral ventricle choroid plexus stroma
comment: editors note: definitions should be fixed to use generic stroma class
xref: MA:0000963
is_a: UBERON:0005206 ! choroid plexus stroma
relationship: part_of UBERON:0002285
intersection_of: UBERON:0005206 ! choroid plexus stroma
intersection_of: part_of UBERON:0002285 ! lateral ventricle
relationship: part_of UBERON:0002285 ! lateral ventricle
relationship: part_of UBERON:0002307 ! choroid plexus of lateral ventricle
[Term]
id: UBERON:0006339
name: third ventricle choroid plexus stroma
xref: MA:0000881
is_a: UBERON:0005206 ! choroid plexus stroma
relationship: part_of UBERON:0002286
intersection_of: UBERON:0005206 ! choroid plexus stroma
intersection_of: part_of UBERON:0002286 ! third ventricle
relationship: part_of UBERON:0002286 ! third ventricle
relationship: part_of UBERON:0002288 ! choroid plexus of third ventricle
[Term]
id: UBERON:0006340
name: fourth ventricle choroid plexus stroma
xref: MA:0000985
is_a: UBERON:0005206 ! choroid plexus stroma
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002422
intersection_of: UBERON:0005206 ! choroid plexus stroma
intersection_of: part_of UBERON:0002422 ! fourth ventricle
relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle
relationship: part_of UBERON:0002422 ! fourth ventricle
[Term]
id: UBERON:0006341
name: outer renal medulla peritubular capillary
xref: MA:0002589
is_a: UBERON:0005272 ! peritubular capillary
relationship: part_of UBERON:0001293
intersection_of: UBERON:0005272 ! peritubular capillary
intersection_of: part_of UBERON:0001293 ! outer medulla of kidney
relationship: part_of UBERON:0001293 ! outer medulla of kidney
[Term]
id: UBERON:0006342
name: left hepatic recess
xref: EMAPA:18047
xref: MA:0000444
is_a: UBERON:0006442 ! hepatic recess
[Term]
id: UBERON:0006343
name: right hepatic recess
xref: EMAPA:18050
xref: MA:0000450
is_a: UBERON:0006442 ! hepatic recess
[Term]
id: UBERON:0006345
name: stapedial artery
def: "A small artery that passes through the ring of the stapes; while the stapedial artery is a temporary artery thought to disappear at late embryonic stage in humans, the mouse stapedial artery is complete by E13 and persists into adulthood[MP]." [MP:0004665]
synonym: "stapedial" RELATED [EHDAA2:0001908]
synonym: "stapedial artery temporary" EXACT [EHDAA2:0001908]
xref: EHDAA2:0001908
xref: EMAPA:17313
xref: MA:0002044
xref: ncithesaurus:Stapedial_Artery
xref: SCTID:361518009
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001637 {source="EHDAA2"} ! artery
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0003119 {source="EHDAA2"} ! aortic arch 2
relationship: existence_ends_during UBERON:0000068 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="MP"} ! embryo stage
relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear
[Term]
id: UBERON:0006347
name: communicating artery
comment: Grouping for anterior and posterior
xref: EMAPA:18598
xref: MA:0001938
xref: ncithesaurus:Communicating_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0006349
name: epigastric artery
xref: EMAPA:18750
xref: MA:0001948
xref: MESH:A.07.231.114.330
xref: ncithesaurus:Epigastric_Artery
xref: SCTID:261400009
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0006351
name: principal vein of forelimb
xref: EMAPA:17018
xref: MA:0002199
is_a: UBERON:0003515 ! forelimb blood vessel
is_a: UBERON:0006443 ! prinicipal vein of limb
relationship: part_of UBERON:0002102
intersection_of: UBERON:0006443 ! prinicipal vein of limb
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0006353
name: principal vein of hindlimb
xref: EMAPA:17019
xref: MA:0002200
is_a: UBERON:0003516 ! hindlimb blood vessel
is_a: UBERON:0006443 ! prinicipal vein of limb
relationship: part_of UBERON:0002103
intersection_of: UBERON:0006443 ! prinicipal vein of limb
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0006355
name: superior vesical vein
xref: EMAPA:18646
xref: MA:0002227
is_a: UBERON:0002460 ! vesical vein
[Term]
id: UBERON:0006356
name: epigastric vein
xref: EMAPA:18759
xref: MA:0002114
xref: ncithesaurus:Epigastric_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0006358
name: vasa hyaloidea propria
xref: EMAPA:18236
xref: MA:0001285
is_a: UBERON:0005607 ! hyaloid vascular plexus
[Term]
id: UBERON:0006359
name: mesoduodenum
xref: EMAPA:17183
xref: EMAPA:17198
xref: EMAPA:19082
xref: MA:0001556
is_a: UBERON:0001170 ! mesentery of small intestine
[Term]
id: UBERON:0006360
name: intermolar eminence
xref: EMAPA:18273
xref: EMAPA:18876
xref: MA:0001590
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0006364
name: ureteric tip
xref: EMAPA:27605
xref: EMAPA:27625
xref: EMAPA:27694
xref: EMAPA:27749
xref: MA:0002601
is_a: UBERON:0001232 ! collecting duct of renal tubule
[Term]
id: UBERON:0006373
name: perihilar interstitium
xref: EMAPA:28083
xref: MA:0002618
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001224 {source="MA"} ! renal pelvis
relationship: part_of UBERON:0005215 {source="MA"} ! kidney interstitium
[Term]
id: UBERON:0006374
name: part of afferent arteriole forming the juxtaglomerular complex
synonym: "renin-producing cells" RELATED [MA:0002580]
xref: EMAPA:28269
xref: MA:0002580
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002303 ! juxtaglomerular apparatus
relationship: part_of UBERON:0004639 ! afferent arteriole
[Term]
id: UBERON:0006376
name: premacula segment of distal straight tubule
def: "." [https://sourceforge.net/tracker/?func=detail&aid=3123600&group_id=76834&atid=1205376, PMID:14595018]
synonym: "kidney medulla loop of Henle ascending limb thick segment" EXACT [MA:th]
synonym: "medullary thick ascending limb of Henle's loop" EXACT [MA:th]
synonym: "renal medulla loop of Henle ascending limb thick segment" EXACT [MA:th]
synonym: "renal medulla thick ascending limb" EXACT [MA:th]
xref: EMAPA:28331
xref: EMAPA:29683
xref: EMAPA:31379
xref: MA:0002628
is_a: UBERON:0007685 ! region of nephron tubule
is_a: UBERON:0008408 ! distal tubular epithelium
relationship: part_of UBERON:0001291 {source="MA"} ! thick ascending limb of loop of Henle
relationship: part_of UBERON:0006541 {source="MA"} ! outer medulla inner stripe loop of henle
relationship: part_of UBERON:0006542 {source="MA"} ! outer medulla outer stripe loop of henle
[Term]
id: UBERON:0006377
name: remnant of Rathke's pouch
synonym: "hypophyseal cleft" RELATED [MA:0000857]
xref: EMAPA:17518
xref: MA:0000857
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0005356 ! Rathke's pouch
relationship: part_of UBERON:0002196 ! adenohypophysis
[Term]
id: UBERON:0006378
name: vibrissa
def: "specialized hairs (or, in certain bird species, specialized feathers) usually employed for tactile sensation. Vibrissae hair grow around the nostrils, above the lips, and on other parts of the face of most mammals, as well as on the forelegs and feet of some animals. Vibrissae are usually thicker and stiffer than other types of hair. Vibrissae consist of inert material and contain no nerves, but do have special sensory cells associated with them. Vibrissae are different from other hairs mainly because they are implanted in a special follicle sealed by a capsule of blood, called a blood sinus. Touching a vibrissa causes it to bend, and the blood in the sinus is pushed to one side or the other. The blood amplifies the movement and allows the mechanoreceptors at the base of the vibrissa to detect extremely small deflections[WP]." [https://sourceforge.net/tracker/?func=detail&aid=3213510&group_id=76834&atid=1205376, Wikipedia:Whiskers]
comment: Editor note: add distinct subclasses for whisker, hair of nose, etc. // Note that the FMA class should probably NOT be grouped here - fix in later release
synonym: "hair of nose" NARROW [FMA:53670]
synonym: "hair of vestibular part of nose" NARROW [FMA:53670]
synonym: "nose hair" NARROW [FMA:53670]
synonym: "whisker" NARROW [MA:0000163]
xref: BTO:0003488
xref: EMAPA:17529
xref: FMA:53670
xref: http://eulep.pdn.cam.ac.uk/~skinbase/Anatomic_hair_types/FOOT_VIBRISSAE_ANNOTATED.jpg
xref: MA:0000163
xref: MESH:A.13.950
property_value: "dubious_for_taxon" NCBITaxon:9606
is_a: UBERON:0001037 {source="FMA"} ! strand of hair
relationship: part_of UBERON:0002416 ! integumental system
[Term]
id: UBERON:0006428
name: basisphenoid bone
comment: "Endochondral ossification of the ventromedial portion of the braincase." [AAO:0000040] // "An endochondral bone that is located ventral to the pterosphenoid and dorsal to the parasphenoid. Basisphenoid is a median bone that is usually Y-shaped." [TAO:0000169]
synonym: "basisphenoid" EXACT [AAO:0000040]
xref: AAO:0000040
xref: EMAPA:18706
xref: MA:0001463
xref: SCTID:95945003
xref: TAO:0000169
property_value: UBPROP:0000001 "An endochondral bone that is located ventral to the pterosphenoid and dorsal to the parasphenoid. Basisphenoid is a median bone that is usually Y-shaped.[TAO]" xsd:string
property_value: UBPROP:0000001 "Endochondral ossification of the ventromedial portion of the braincase.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO]" xsd:string
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0011164 {source="MA"} ! neurocranium bone
relationship: develops_from UBERON:0009194 {source="cjm"} ! basisphenoid cartilage condenstion
relationship: part_of UBERON:0001677 ! sphenoid bone
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0006430
name: xiphoid cartilage
subset: uberon_slim
synonym: "cartilage of xiphoid process" EXACT [FMA:32574]
synonym: "ensiform cartilage" RELATED [Wikipedia:Xiphoid_process]
synonym: "xiphoid cartilage" EXACT []
synonym: "xiphoid process cartilage" EXACT [FMA:32574]
xref: AAO:0000940
xref: EMAPA:18725
xref: FMA:32574
xref: MA:0001884
property_value: UBPROP:0000001 "Distal, cartilaginous portion of the sternum.[AAO]" xsd:string
is_a: UBERON:0000398 ! cartilage tissue of sternum
is_a: UBERON:0002236 ! costal cartilage
relationship: part_of UBERON:0002207
intersection_of: UBERON:0002236 ! costal cartilage
intersection_of: part_of UBERON:0002207 ! xiphoid process
relationship: part_of UBERON:0002207 ! xiphoid process
[Term]
id: UBERON:0006431
name: xiphoid process bone
synonym: "bone tissue of xiphoid process" EXACT [FMA:32577]
synonym: "xiphoid bone" RELATED [Wikipedia:Xiphoid_process]
xref: FMA:32577
xref: GAID:248
is_a: UBERON:0002481 ! bone tissue
is_a: UBERON:0003837 ! thoracic segment connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002207
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0002207 ! xiphoid process
relationship: part_of UBERON:0002207 ! xiphoid process
[Term]
id: UBERON:0006435
name: os penis
def: "a bone found in the penis of most mammals. It is absent in humans, but present in other primates, such as the closely-related chimpanzee. The bone aids in sexual intercourse[WP]." [Wikipedia:Baculum]
synonym: "baculum" EXACT [Wikipedia:Baculum]
synonym: "penile bone" EXACT [Wikipedia:Baculum]
synonym: "penis bone" EXACT [Wikipedia:Baculum]
xref: EMAPA:29769
xref: MA:0000406
xref: SCTID:27962002
property_value: RO:0002161 NCBITaxon:9606
is_a: UBERON:0007719 ! bone of reproductive structure
relationship: part_of UBERON:0000989
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000989 ! penis
relationship: part_of UBERON:0000989 ! penis
[Term]
id: UBERON:0006436
name: principal artery to forelimb
synonym: "7th cervical intersegmental artery" RELATED [EMAPA:16811]
synonym: "axial artery of forelimb" RELATED [EMAPA:16811]
xref: EMAPA:16811
xref: MA:0002024
is_a: UBERON:0007718 ! principal artery to limb
[Term]
id: UBERON:0006438
name: principal artery to hindlimb
xref: EMAPA:16812
xref: MA:0002025
is_a: UBERON:0007718 ! principal artery to limb
[Term]
id: UBERON:0006440
name: os clitoris
synonym: "baubellum" EXACT [Wikipedia:Baculum]
synonym: "os clitoridis" EXACT [Wikipedia:Baculum]
xref: EMAPA:30823
xref: MA:0000387
property_value: RO:0002161 NCBITaxon:9606
is_a: UBERON:0007719 ! bone of reproductive structure
relationship: part_of UBERON:0002411
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002411 ! clitoris
relationship: part_of UBERON:0002411 ! clitoris
[Term]
id: UBERON:0006442
name: hepatic recess
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001179 ! peritoneal cavity
[Term]
id: UBERON:0006443
name: prinicipal vein of limb
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003514 ! limb blood vessel
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0006444
name: annulus fibrosus
def: "A ring of fibrous or fibrocartilaginous tissue (as of an intervertebral disk or surrounding an orifice of the heart)." [BTO:0003627]
synonym: "anulus fibrosus" EXACT [FMA:76704]
synonym: "fibrous ring" RELATED [BTO:0003627]
xref: BTO:0003627
xref: FMA:76704
is_a: UBERON:0001995 ! fibrocartilage
[Term]
id: UBERON:0006445
name: caudal middle frontal gyrus
def: "Component of the middle frontal gyrus. The rostral boundary of the middle frontal gyrus was the rostral extent of the middle frontal gyrus whereas the caudal boundary was the precentral gyrus. The medial and lateral boundaries were designated as the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1083]
synonym: "caudal middle frontal gyrus" EXACT [NIF_GrossAnatomy:birnlex_1083]
synonym: "posterior part of middle frontal gyrus" EXACT [FMA:70688]
xref: FMA:70688
xref: NIF_GrossAnatomy:birnlex_1083
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
relationship: part_of UBERON:0002702 ! middle frontal gyrus
[Term]
id: UBERON:0006446
name: rostral middle frontal gyrus
def: "Component of the middle frontal gyrus The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the middle frontal gyrus. The medial and lateral boundaries are the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_1090]
synonym: "anterior part of middle frontal gyrus" EXACT [FMA:70687]
synonym: "rostral middle frontal gyrus" EXACT [NIF_GrossAnatomy:birnlex_1090]
xref: FMA:70687
xref: NIF_GrossAnatomy:birnlex_1090
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
relationship: part_of UBERON:0002702 ! middle frontal gyrus
[Term]
id: UBERON:0006447
name: fifth lumbar spinal cord segment
subset: defined_by_ordinal_series
synonym: "fifth lumbar spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1251]
synonym: "L5 segment" EXACT [FMA:71191]
synonym: "L5 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1251]
xref: FMA:71191
xref: NIF_GrossAnatomy:birnlex_1251
xref: SCTID:278775008
is_a: UBERON:0007716 ! lumbar subsegment of spinal cord
[Term]
id: UBERON:0006448
name: first lumbar spinal cord segment
subset: defined_by_ordinal_series
synonym: "first lumbar spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1336]
synonym: "L1 segment" EXACT [FMA:71187]
synonym: "L1 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1336]
xref: FMA:71187
xref: NIF_GrossAnatomy:birnlex_1336
xref: SCTID:278776009
is_a: UBERON:0007716 ! lumbar subsegment of spinal cord
[Term]
id: UBERON:0006449
name: third lumbar spinal cord segment
subset: defined_by_ordinal_series
synonym: "L3 segment" EXACT [FMA:71189]
synonym: "L3 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1340]
synonym: "third lumbar spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1340]
xref: FMA:71189
xref: NIF_GrossAnatomy:birnlex_1340
xref: SCTID:278778005
is_a: UBERON:0007716 ! lumbar subsegment of spinal cord
[Term]
id: UBERON:0006450
name: second lumbar spinal cord segment
subset: defined_by_ordinal_series
synonym: "l2 segment" EXACT [FMA:71188]
synonym: "L2 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1345]
synonym: "second lumbar spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1345]
xref: FMA:71188
xref: NIF_GrossAnatomy:birnlex_1345
xref: SCTID:278777000
is_a: UBERON:0007716 ! lumbar subsegment of spinal cord
[Term]
id: UBERON:0006451
name: fourth lumbar spinal cord segment
subset: defined_by_ordinal_series
synonym: "L4 segment" EXACT [FMA:71190]
synonym: "L4 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1352]
xref: FMA:71190
xref: NIF_GrossAnatomy:birnlex_1352
xref: SCTID:278779002
is_a: UBERON:0007716 ! lumbar subsegment of spinal cord
[Term]
id: UBERON:0006452
name: fourth thoracic spinal cord segment
subset: defined_by_ordinal_series
synonym: "T4 segment" EXACT [FMA:71170]
synonym: "T4 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1378]
xref: FMA:71170
xref: NIF_GrossAnatomy:birnlex_1378
xref: SCTID:278766006
is_a: UBERON:0007715 ! thoracic subsegment of spinal cord
[Term]
id: UBERON:0006453
name: fifth thoracic spinal cord segment
subset: defined_by_ordinal_series
synonym: "fifth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1383]
synonym: "t5 segment" EXACT [FMA:71171]
synonym: "T5 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1383]
xref: FMA:71171
xref: NIF_GrossAnatomy:birnlex_1383
xref: SCTID:278767002
is_a: UBERON:0007715 ! thoracic subsegment of spinal cord
[Term]
id: UBERON:0006454
name: sixth thoracic spinal cord segment
subset: defined_by_ordinal_series
synonym: "sixth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1387]
synonym: "t6 segment" EXACT [FMA:71172]
synonym: "T6 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1387]
xref: FMA:71172
xref: NIF_GrossAnatomy:birnlex_1387
xref: SCTID:278768007
is_a: UBERON:0007715 ! thoracic subsegment of spinal cord
[Term]
id: UBERON:0006455
name: seventh thoracic spinal cord segment
subset: defined_by_ordinal_series
synonym: "seventh thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1392]
synonym: "t7 segment" EXACT [FMA:71173]
synonym: "T7 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1392]
xref: FMA:71173
xref: NIF_GrossAnatomy:birnlex_1392
xref: SCTID:278769004
is_a: UBERON:0007715 ! thoracic subsegment of spinal cord
[Term]
id: UBERON:0006456
name: eighth thoracic spinal cord segment
subset: defined_by_ordinal_series
synonym: "eighth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1398]
synonym: "t8 segment" EXACT [FMA:71174]
synonym: "T8 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1398]
xref: FMA:71174
xref: NIF_GrossAnatomy:birnlex_1398
xref: SCTID:278770003
is_a: UBERON:0007715 ! thoracic subsegment of spinal cord
[Term]
id: UBERON:0006457
name: first thoracic spinal cord segment
subset: defined_by_ordinal_series
synonym: "first thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1452]
synonym: "t1 segment" EXACT [FMA:62421]
synonym: "T1 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1452]
xref: FMA:62421
xref: NIF_GrossAnatomy:birnlex_1452
xref: SCTID:278762008
is_a: UBERON:0007715 ! thoracic subsegment of spinal cord
[Term]
id: UBERON:0006458
name: second thoracic spinal cord segment
subset: defined_by_ordinal_series
synonym: "second thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1454]
synonym: "t2 segment" EXACT [FMA:62422]
synonym: "T2 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1454]
xref: FMA:62422
xref: NIF_GrossAnatomy:birnlex_1454
xref: SCTID:278763003
is_a: UBERON:0007715 ! thoracic subsegment of spinal cord
[Term]
id: UBERON:0006459
name: third thoracic spinal cord segment
subset: defined_by_ordinal_series
synonym: "t3 segment" EXACT [FMA:71169]
synonym: "T3 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1458]
synonym: "third thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1458]
xref: FMA:71169
xref: NIF_GrossAnatomy:birnlex_1458
xref: SCTID:278764009
is_a: UBERON:0007715 ! thoracic subsegment of spinal cord
[Term]
id: UBERON:0006460
name: first sacral spinal cord segment
subset: defined_by_ordinal_series
synonym: "first sacral spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1532]
synonym: "S1 segment" EXACT [FMA:256625]
synonym: "S1 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1532]
xref: FMA:256625
xref: NIF_GrossAnatomy:birnlex_1532
xref: SCTID:278780004
is_a: UBERON:0007717 ! sacral subsegment of spinal cord
[Term]
id: UBERON:0006461
name: second sacral spinal cord segment
subset: defined_by_ordinal_series
synonym: "S2 segment" EXACT [FMA:256627]
synonym: "S2 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1539]
synonym: "second sacral spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1539]
xref: FMA:256627
xref: NIF_GrossAnatomy:birnlex_1539
xref: SCTID:278781000
is_a: UBERON:0007717 ! sacral subsegment of spinal cord
[Term]
id: UBERON:0006462
name: third sacral spinal cord segment
subset: defined_by_ordinal_series
synonym: "S3 segment" EXACT [FMA:256629]
synonym: "S3 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1544]
synonym: "third sacral spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1544]
xref: FMA:256629
xref: NIF_GrossAnatomy:birnlex_1544
xref: SCTID:278782007
is_a: UBERON:0007717 ! sacral subsegment of spinal cord
[Term]
id: UBERON:0006463
name: fourth sacral spinal cord segment
subset: defined_by_ordinal_series
synonym: "S4 segment" EXACT [FMA:256631]
synonym: "S4 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1548]
xref: FMA:256631
xref: NIF_GrossAnatomy:birnlex_1548
xref: SCTID:278783002
is_a: UBERON:0007717 ! sacral subsegment of spinal cord
[Term]
id: UBERON:0006464
name: fifth sacral spinal cord segment
subset: defined_by_ordinal_series
synonym: "fifth sacral spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1553]
synonym: "S5 segment" EXACT [FMA:256633]
synonym: "S5 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1553]
xref: FMA:256633
xref: NIF_GrossAnatomy:birnlex_1553
xref: SCTID:278784008
is_a: UBERON:0007717 ! sacral subsegment of spinal cord
[Term]
id: UBERON:0006465
name: ninth thoracic spinal cord segment
subset: defined_by_ordinal_series
synonym: "ninth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1584]
synonym: "t9 segment" EXACT [FMA:71175]
synonym: "T9 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1584]
xref: FMA:71175
xref: NIF_GrossAnatomy:birnlex_1584
xref: SCTID:278771004
is_a: UBERON:0007715 ! thoracic subsegment of spinal cord
[Term]
id: UBERON:0006466
name: tenth thoracic spinal cord segment
subset: defined_by_ordinal_series
synonym: "t10 segment" EXACT [FMA:71176]
synonym: "T10 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1591]
synonym: "tenth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1591]
xref: FMA:71176
xref: NIF_GrossAnatomy:birnlex_1591
xref: SCTID:278772006
is_a: UBERON:0007715 ! thoracic subsegment of spinal cord
[Term]
id: UBERON:0006467
name: eleventh thoracic spinal cord segment
subset: defined_by_ordinal_series
synonym: "eleventh thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1596]
synonym: "t11 segment" EXACT [FMA:71177]
synonym: "T11 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1596]
xref: FMA:71177
xref: NIF_GrossAnatomy:birnlex_1596
xref: SCTID:278773001
is_a: UBERON:0007715 ! thoracic subsegment of spinal cord
[Term]
id: UBERON:0006468
name: twelfth thoracic spinal cord segment
subset: defined_by_ordinal_series
synonym: "t12 segment" EXACT [FMA:71178]
synonym: "T12 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1598]
synonym: "twelfth thoracic spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1598]
xref: FMA:71178
xref: NIF_GrossAnatomy:birnlex_1598
xref: SCTID:278774007
is_a: UBERON:0007715 ! thoracic subsegment of spinal cord
[Term]
id: UBERON:0006469
name: first cervical spinal cord segment
subset: defined_by_ordinal_series
synonym: "C1 segment" EXACT [FMA:71179]
synonym: "C1 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1694]
synonym: "first cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1694]
xref: FMA:71179
xref: NIF_GrossAnatomy:birnlex_1694
xref: SCTID:278754000
is_a: UBERON:0007714 ! cervical subsegment of spinal cord
[Term]
id: UBERON:0006470
name: eighth cervical spinal cord segment
subset: defined_by_ordinal_series
synonym: "C8 segment" EXACT [FMA:71186]
synonym: "C8 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1696]
synonym: "eighth cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_1696]
xref: FMA:71186
xref: NIF_GrossAnatomy:birnlex_1696
xref: SCTID:278761001
is_a: UBERON:0007714 ! cervical subsegment of spinal cord
[Term]
id: UBERON:0006471
name: brodmann (1909) area 5
def: "Brodmann area 5 is one of Brodmann's cytologically defined regions of the brain. It is involved in somatosensory processing and association." [Wikipedia:Brodmann_area_5]
synonym: "area 5 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1736]
synonym: "Area praeparietalis" EXACT [NIF_GrossAnatomy:birnlex_1736]
synonym: "B09-5" EXACT [NIF_GrossAnatomy:birnlex_1736]
synonym: "brodmann (1909) area 5" EXACT [NIF_GrossAnatomy:birnlex_1736]
synonym: "brodmann area 5" EXACT [FMA:68601]
synonym: "Brodmann area 5, preparietal" EXACT [NIF_GrossAnatomy:birnlex_1736]
synonym: "preparietal area 5" EXACT [FMA:68601]
synonym: "preparietal area 5" RELATED [Wikipedia:Brodmann_area_5]
synonym: "secondary somatosensory cortex" RELATED [Wikipedia:Brodmann_area_5]
xref: FMA:68601
xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Brodmann_areas_5.png
xref: NIF_GrossAnatomy:birnlex_1736
xref: SCTID:384764008
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006472
name: brodmann (1909) area 6
def: "Brodmann area 6, or BA6, is part of the frontal cortex in the human brain. Situated just anterior to the primary motor cortex, it is composed of the premotor cortex and, medially, the supplementary motor area, or SMA. This large area of the frontal cortex is believed to play a role in the planning of complex, coordinated movements. Brodmann area 6 is also called agranular frontal area 6 in humans because it lacks an internal granular cortical layer (layer IV). It is a subdivision of the cytoarchitecturally defined precentral region of cerebral cortex. In the human brain, it is located on the portions of the precentral gyrus that are not occupied by the gigantopyramidal area 4; furthermore, BA6 extends onto the caudal portions of the superior frontal and middle frontal gyri. It extends from the cingulate sulcus on the medial aspect of the hemisphere to the lateral sulcus on the lateral aspect. It is bounded rostrally by the granular frontal region and caudally by the gigantopyramidal area 4 (Brodmann, 1909)." [Wikipedia:Brodmann_area_6]
synonym: "agranular frontal area 6" EXACT [FMA:68602]
synonym: "agranular frontal area 6" RELATED [Wikipedia:Brodmann_area_6]
synonym: "area 6 of brodmann" EXACT [FMA:68602]
synonym: "area 6 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1737]
synonym: "Area frontalis agranularis" EXACT [NIF_GrossAnatomy:birnlex_1737]
synonym: "B09-6" EXACT [NIF_GrossAnatomy:birnlex_1737]
synonym: "brodmann (1909) area 6" EXACT [NIF_GrossAnatomy:birnlex_1737]
synonym: "brodmann area 6" EXACT [FMA:68602]
synonym: "Brodmann area 6, agranular frontal" EXACT [NIF_GrossAnatomy:birnlex_1737]
synonym: "frontal belt" EXACT [FMA:68602]
xref: FMA:68602
xref: http://upload.wikimedia.org/wikipedia/commons/1/11/Brodmann_areas_6.png
xref: NIF_GrossAnatomy:birnlex_1737
xref: SCTID:384765009
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006473
name: brodmann (1909) area 18
def: "." [NIF_GrossAnatomy:birnlex_1749]
synonym: "area 18 of brodmann" EXACT [FMA:68615]
synonym: "area 18 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1749]
synonym: "Area parastriata" EXACT [NIF_GrossAnatomy:birnlex_1749]
synonym: "B09-18" EXACT [NIF_GrossAnatomy:birnlex_1749]
synonym: "brodmann (1909) area 18" EXACT [NIF_GrossAnatomy:birnlex_1749]
synonym: "brodmann area 18" EXACT [FMA:68615]
synonym: "Brodmann area 18, parastriate" EXACT [NIF_GrossAnatomy:birnlex_1749]
synonym: "brodmann's area 18" EXACT [FMA:68615]
synonym: "parastriate area 18" EXACT [FMA:68615]
synonym: "secondary visual area" EXACT [FMA:68615]
synonym: "visual area ii" EXACT [FMA:68615]
xref: FMA:68615
xref: NIF_GrossAnatomy:birnlex_1749
xref: SCTID:384773000
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006474
name: brodmann (1909) area 30
synonym: "agranular retrolimbic area 30" EXACT [FMA:68627]
synonym: "area 30 of brodmann" EXACT [FMA:68627]
synonym: "area 30 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1764]
synonym: "Area retrolimbica agranularis" EXACT [NIF_GrossAnatomy:birnlex_1764]
synonym: "B09-30" EXACT [NIF_GrossAnatomy:birnlex_1764]
synonym: "brodmann (1909) area 30" EXACT [NIF_GrossAnatomy:birnlex_1764]
synonym: "brodmann area 30" EXACT [FMA:68627]
synonym: "Brodmann area 30, agranular retrolimbic" EXACT [NIF_GrossAnatomy:birnlex_1764]
synonym: "brodmann's area 30" EXACT [FMA:68627]
xref: FMA:68627
xref: NIF_GrossAnatomy:birnlex_1764
xref: SCTID:384784007
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006475
name: brodmann (1909) area 31
synonym: "area 31 of brodmann" EXACT [FMA:68628]
synonym: "area 31 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1765]
synonym: "Area cingularis posterior dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1765]
synonym: "B09-31" EXACT [NIF_GrossAnatomy:birnlex_1765]
synonym: "brodmann (1909) area 31" EXACT [NIF_GrossAnatomy:birnlex_1765]
synonym: "brodmann area 31" EXACT [FMA:68628]
synonym: "Brodmann area 31, dorsal posterior cingulate" EXACT [NIF_GrossAnatomy:birnlex_1765]
synonym: "brodmann's area 31" EXACT [FMA:68628]
synonym: "cinguloparietal transition area" EXACT [FMA:68628]
synonym: "dorsal posterior cingulate area 31" EXACT [FMA:68628]
xref: FMA:68628
xref: NIF_GrossAnatomy:birnlex_1765
xref: SCTID:384785008
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006476
name: brodmann (1909) area 33
synonym: "area 33 of brodmann" EXACT [FMA:68630]
synonym: "area 33 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1766]
synonym: "Area praegenualis" EXACT [NIF_GrossAnatomy:birnlex_1766]
synonym: "B09-33" EXACT [NIF_GrossAnatomy:birnlex_1766]
synonym: "brodmann (1909) area 33" EXACT [NIF_GrossAnatomy:birnlex_1766]
synonym: "brodmann area 33" EXACT [FMA:68630]
synonym: "Brodmann area 33, pregenual" EXACT [NIF_GrossAnatomy:birnlex_1766]
synonym: "brodmann's area 33" EXACT [FMA:68630]
synonym: "pregenual area 33" EXACT [FMA:68630]
xref: FMA:68630
xref: NIF_GrossAnatomy:birnlex_1766
xref: SCTID:384788005
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006477
name: brodmann (1909) area 34
synonym: "area 34 of brodmann" EXACT [FMA:68631]
synonym: "area 34 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1767]
synonym: "Area entorhinalis dorsalis" EXACT [NIF_GrossAnatomy:birnlex_1767]
synonym: "B09-34" EXACT [NIF_GrossAnatomy:birnlex_1767]
synonym: "brodmann (1909) area 34" EXACT [NIF_GrossAnatomy:birnlex_1767]
synonym: "brodmann area 34" EXACT [FMA:68631]
synonym: "Brodmann area 34, dorsal entorhinal" EXACT [NIF_GrossAnatomy:birnlex_1767]
synonym: "dorsal entorhinal area 34" EXACT [FMA:68631]
xref: FMA:68631
xref: NIF_GrossAnatomy:birnlex_1767
xref: SCTID:384789002
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006478
name: brodmann (1909) area 37
synonym: "area 37 0f brodmann" EXACT [FMA:68634]
synonym: "area 37 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1770]
synonym: "Area occipitotemporalis" EXACT [NIF_GrossAnatomy:birnlex_1770]
synonym: "B09-37" EXACT [NIF_GrossAnatomy:birnlex_1770]
synonym: "brodmann (1909) area 37" EXACT [NIF_GrossAnatomy:birnlex_1770]
synonym: "brodmann area 37" EXACT [FMA:68634]
synonym: "Brodmann area 37, occipitotemporal" EXACT [NIF_GrossAnatomy:birnlex_1770]
synonym: "occipitotemporal area 37" EXACT [FMA:68634]
xref: FMA:68634
xref: NIF_GrossAnatomy:birnlex_1770
xref: SCTID:384792003
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006479
name: brodmann (1909) area 38
synonym: "area 38 of brodmann" EXACT [FMA:68635]
synonym: "area 38 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1771]
synonym: "Area temporopolaris" EXACT [NIF_GrossAnatomy:birnlex_1771]
synonym: "B09-38" EXACT [NIF_GrossAnatomy:birnlex_1771]
synonym: "brodmann (1909) area 38" EXACT [NIF_GrossAnatomy:birnlex_1771]
synonym: "brodmann area 38" EXACT [FMA:68635]
synonym: "Brodmann area 38, temporopolar" EXACT [NIF_GrossAnatomy:birnlex_1771]
synonym: "temporopolar area 38" EXACT [FMA:68635]
xref: FMA:68635
xref: NIF_GrossAnatomy:birnlex_1771
xref: SCTID:384793008
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006480
name: brodmann (1909) area 39
synonym: "angular area 39" EXACT [FMA:68636]
synonym: "area 39 of brodmann" EXACT [FMA:68636]
synonym: "area 39 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1772]
synonym: "Area angularis" EXACT [NIF_GrossAnatomy:birnlex_1772]
synonym: "B09-39" EXACT [NIF_GrossAnatomy:birnlex_1772]
synonym: "brodmann (1909) area 39" EXACT [NIF_GrossAnatomy:birnlex_1772]
synonym: "brodmann area 39" EXACT [FMA:68636]
synonym: "Brodmann area 39, angular" EXACT [NIF_GrossAnatomy:birnlex_1772]
xref: FMA:68636
xref: NIF_GrossAnatomy:birnlex_1772
xref: SCTID:384794002
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006481
name: brodmann (1909) area 44
synonym: "area 44 of brodmann" EXACT [FMA:68641]
synonym: "area 44 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1776]
synonym: "Area opercularis" EXACT [NIF_GrossAnatomy:birnlex_1776]
synonym: "B09-44" EXACT [NIF_GrossAnatomy:birnlex_1776]
synonym: "brodmann (1909) area 44" EXACT [NIF_GrossAnatomy:birnlex_1776]
synonym: "brodmann area 44" EXACT [FMA:68641]
synonym: "Brodmann area 44, opercular" EXACT [NIF_GrossAnatomy:birnlex_1776]
synonym: "opercular area 44" EXACT [FMA:68641]
xref: FMA:68641
xref: NIF_GrossAnatomy:birnlex_1776
xref: SCTID:384803008
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006482
name: brodmann (1909) area 45
synonym: "area 45 of brodmann" EXACT [FMA:68642]
synonym: "area 45 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1777]
synonym: "Area triangularis" EXACT [NIF_GrossAnatomy:birnlex_1777]
synonym: "B09-45" EXACT [NIF_GrossAnatomy:birnlex_1777]
synonym: "brodmann (1909) area 45" EXACT [NIF_GrossAnatomy:birnlex_1777]
synonym: "brodmann area 45" EXACT [FMA:68642]
synonym: "Brodmann area 45, triangular" EXACT [NIF_GrossAnatomy:birnlex_1777]
synonym: "triangular area 45" EXACT [FMA:68642]
xref: FMA:68642
xref: NIF_GrossAnatomy:birnlex_1777
xref: SCTID:384805001
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006483
name: brodmann (1909) area 46
def: "Brodmann area 46, or BA46, is part of the frontal cortex in the human brain. It is between BA10 and BA45. BA46 is known as middle frontal area 46. In the human it occupies approximately the middle third of the middle frontal gyrus and the most rostral portion of the inferior frontal gyrus. Brodmann area 46 roughly corresponds with the dorsolateral prefrontal cortex (DLPFC), although the borders of area 46 are based on cytoarchitecture rather than function. The DLPFC also encompasses part of granular frontal area 9, directly adjacent on the dorsal surface of the cortex. Cytoarchitecturally, BA46 is bounded dorsally by the granular frontal area 9, rostroventrally by the frontopolar area 10 and caudally by the triangular area 45 (Brodmann-1909). There is some discrepancy between the extent of BA8 (Brodmann-1905) and the same area as described by Walker (1940)" [Wikipedia:Brodmann_area_46]
synonym: "area 46 of brodmann" EXACT [FMA:68643]
synonym: "area 46 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1778]
synonym: "Area frontalis media" EXACT [NIF_GrossAnatomy:birnlex_1778]
synonym: "B09-46" EXACT [NIF_GrossAnatomy:birnlex_1778]
synonym: "brodmann (1909) area 46" EXACT [NIF_GrossAnatomy:birnlex_1778]
synonym: "brodmann area 46" EXACT [FMA:68643]
synonym: "Brodmann area 46, middle frontal" EXACT [NIF_GrossAnatomy:birnlex_1778]
synonym: "middle frontal area 46" EXACT [FMA:68643]
synonym: "middle frontal area 46" RELATED [Wikipedia:Brodmann_area_46]
xref: FMA:68643
xref: http://upload.wikimedia.org/wikipedia/commons/c/cd/Brodmann_area_46.png
xref: NIF_GrossAnatomy:birnlex_1778
xref: SCTID:384806000
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006484
name: brodmann (1909) area 47
synonym: "area 47 of brodmann" EXACT [FMA:68644]
synonym: "area 47 of Brodmann-1909" EXACT [NIF_GrossAnatomy:birnlex_1779]
synonym: "Area orbitalis" EXACT [NIF_GrossAnatomy:birnlex_1779]
synonym: "B09-47" EXACT [NIF_GrossAnatomy:birnlex_1779]
synonym: "brodmann (1909) area 47" EXACT [NIF_GrossAnatomy:birnlex_1779]
synonym: "brodmann area 47" EXACT [FMA:68644]
synonym: "Brodmann area 47, orbital" EXACT [NIF_GrossAnatomy:birnlex_1779]
synonym: "orbital area 47" EXACT [FMA:68644]
xref: FMA:68644
xref: NIF_GrossAnatomy:birnlex_1779
xref: SCTID:384807009
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0006485
name: brodmann (1909) area 48
synonym: "area 48 of brodmann" EXACT [FMA:81151]
synonym: "Area retrosubicularis" EXACT [NIF_GrossAnatomy:birnlex_1791]
synonym: "B09-48" EXACT [NIF_GrossAnatomy:birnlex_1791]
synonym: "brodmann (1909) area 48" EXACT [NIF_GrossAnatomy:birnlex_1791]
synonym: "brodmann area 48" EXACT [FMA:81151]
synonym: "Brodmann area 48, retrosubicular" EXACT [NIF_GrossAnatomy:birnlex_1791]
synonym: "brodmann's area 48" EXACT [FMA:81151]
synonym: "retrosubicular area 48" EXACT [FMA:81151]
xref: FMA:81151
xref: NIF_GrossAnatomy:birnlex_1791
xref: SCTID:384808004
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0006486
name: brodmann (1909) area 52
synonym: "area 52 of brodmann" EXACT [FMA:81153]
synonym: "Area parainsularis" EXACT [NIF_GrossAnatomy:birnlex_1792]
synonym: "B09-52" EXACT [NIF_GrossAnatomy:birnlex_1792]
synonym: "brodmann (1909) area 52" EXACT [NIF_GrossAnatomy:birnlex_1792]
synonym: "brodmann area 52" EXACT [FMA:81153]
synonym: "Brodmann area 52, parainsular" EXACT [NIF_GrossAnatomy:birnlex_1792]
synonym: "parainsular area 52" EXACT [FMA:81153]
xref: FMA:81153
xref: NIF_GrossAnatomy:birnlex_1792
xref: SCTID:384809007
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0006487
name: hadjikhani et al. (1998) visuotopic area v2d
synonym: "hadjikhani et al. (1998) visuotopic area v2d" EXACT [NIF_GrossAnatomy:birnlex_4055]
xref: NIF_GrossAnatomy:birnlex_4055
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
[Term]
id: UBERON:0006488
name: third cervical spinal cord segment
subset: defined_by_ordinal_series
synonym: "C3 segment" EXACT [FMA:71181]
synonym: "C3 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_744]
synonym: "third cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_744]
xref: FMA:71181
xref: NIF_GrossAnatomy:birnlex_744
xref: SCTID:278756003
is_a: UBERON:0007714 ! cervical subsegment of spinal cord
[Term]
id: UBERON:0006489
name: second cervical spinal cord segment
subset: defined_by_ordinal_series
synonym: "C2 segment" EXACT [FMA:71180]
synonym: "C2 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_752]
synonym: "second cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_752]
xref: FMA:71180
xref: NIF_GrossAnatomy:birnlex_752
xref: SCTID:278755004
is_a: UBERON:0007714 ! cervical subsegment of spinal cord
[Term]
id: UBERON:0006490
name: fourth cervical spinal cord segment
subset: defined_by_ordinal_series
synonym: "C4 segment" EXACT [FMA:71182]
synonym: "C4 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_753]
synonym: "forth cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_753]
xref: FMA:71182
xref: NIF_GrossAnatomy:birnlex_753
xref: SCTID:278757007
is_a: UBERON:0007714 ! cervical subsegment of spinal cord
[Term]
id: UBERON:0006491
name: fifth cervical spinal cord segment
subset: defined_by_ordinal_series
synonym: "C5 segment" EXACT [FMA:71183]
synonym: "C5 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_760]
synonym: "fifth cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_760]
xref: FMA:71183
xref: NIF_GrossAnatomy:birnlex_760
xref: SCTID:278758002
is_a: UBERON:0007714 ! cervical subsegment of spinal cord
[Term]
id: UBERON:0006492
name: sixth cervical spinal cord segment
subset: defined_by_ordinal_series
synonym: "C6 segment" EXACT [FMA:71184]
synonym: "C6 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_766]
synonym: "sixth cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_766]
xref: FMA:71184
xref: NIF_GrossAnatomy:birnlex_766
xref: SCTID:278759005
is_a: UBERON:0007714 ! cervical subsegment of spinal cord
[Term]
id: UBERON:0006493
name: seventh cervical spinal cord segment
subset: defined_by_ordinal_series
synonym: "C7 segment" EXACT [FMA:71185]
synonym: "C7 spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_773]
synonym: "seventh cervical spinal cord segment" EXACT [NIF_GrossAnatomy:birnlex_773]
xref: FMA:71185
xref: NIF_GrossAnatomy:birnlex_773
xref: SCTID:278760000
is_a: UBERON:0007714 ! cervical subsegment of spinal cord
[Term]
id: UBERON:0006494
name: apex of arytenoid
synonym: "apex of arytenoid cartilage" EXACT [FMA:55348]
synonym: "arytenoid cartilage apex" EXACT [FMA:55348]
xref: FMA:55348
xref: MA:0001760
xref: SCTID:279534007
is_a: UBERON:0001996 ! elastic cartilage tissue
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003583 ! larynx connective tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001740 ! arytenoid cartilage
[Term]
id: UBERON:0006495
name: osseus cochlear canal
synonym: "osseous cochlear canal" EXACT [FMA:75666]
xref: FMA:75666
xref: MA:0001183
is_a: UBERON:0005744 ! cranial conduit
[Term]
id: UBERON:0006496
name: external acoustic meatus osseus part
synonym: "osseous external acoustic tube" EXACT [FMA:61290]
synonym: "osseous part of external acoustic meatus" EXACT [FMA:61290]
xref: FMA:61290
xref: MA:0001235
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001352 ! external acoustic meatus
[Term]
id: UBERON:0006497
name: foot interosseus muscle
synonym: "foot interosseous" EXACT [FMA:37456]
synonym: "interosseous of foot" EXACT [FMA:37456]
xref: FMA:37456
xref: MA:0002302
xref: ncithesaurus:Foot_Interosseous_Muscle
xref: SCTID:181714004
is_a: UBERON:0001498 ! muscle of foot
is_a: UBERON:0006508 ! interosseus muscle
relationship: part_of UBERON:0002387
intersection_of: UBERON:0006508 ! interosseus muscle
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0006499
name: dorsal foot interosseus muscle
def: "In human anatomy, the dorsal interossei of the foot are four muscles situated between the metatarsal bones." [Wikipedia:Dorsal_interossei_of_the_foot]
synonym: "dorsal interosseous of foot" EXACT [FMA:37457]
synonym: "musculi interossei dorsalis pedis" EXACT []
synonym: "musculi interossei dorsalis pedis" RELATED LATIN [Wikipedia:Dorsal_interossei_of_the_foot]
xref: FMA:37457
xref: http://upload.wikimedia.org/wikipedia/commons/5/57/Gray446.png
xref: MA:0002303
xref: ncithesaurus:Dorsal_Foot_Interosseous_Muscle
is_a: UBERON:0006497 ! foot interosseus muscle
relationship: has_muscle_antagonist UBERON:0006502 {source="dbpedia"} ! plantar foot interosseus muscle
relationship: has_muscle_insertion UBERON:0004302 {source="dbpedia"} ! proximal phalanx
relationship: has_muscle_origin UBERON:0000983 {source="dbpedia"} ! metatarsus region
[Term]
id: UBERON:0006502
name: plantar foot interosseus muscle
def: "The plantar interossei, three in number, lie beneath rather than between the metatarsal bones, and each is connected with but one metatarsal bone. They arise from the bases and medial sides of the bodies of the third, fourth, and fifth metatarsal bones, and are inserted into the medial sides of the bases of the first phalanges of the same toes, and into the aponeuroses of the tendons of the Extensor digitorum longus." [Wikipedia:Plantar_interossei_muscles]
synonym: "musculi interossei plantares" EXACT []
synonym: "musculi interosseus plantaris" RELATED LATIN [Wikipedia:Plantar_interossei_muscles]
synonym: "plantar interosseous of foot" EXACT [FMA:37458]
xref: FMA:37458
xref: http://upload.wikimedia.org/wikipedia/commons/2/21/Gray447.png
xref: MA:0002304
xref: ncithesaurus:Plantar_Foot_Interosseus_Muscle
is_a: UBERON:0006497 ! foot interosseus muscle
relationship: has_muscle_antagonist UBERON:0006499 {source="dbpedia"} ! dorsal foot interosseus muscle
relationship: has_muscle_insertion UBERON:0004302 {source="dbpedia"} ! proximal phalanx
relationship: has_muscle_origin UBERON:0000983 {source="dbpedia"} ! metatarsus region
[Term]
id: UBERON:0006505
name: palmar hand interosseus muscle
def: "The palmar interossei (interossei volares) are small muscles in the hand that lie on the anterior aspect of the metacarpals. They are smaller than the dorsal interossei of the hand, which lie between the metacarpals" [Wikipedia:Palmar_interossei_muscles]
synonym: "musculi interossei palmares" EXACT []
synonym: "musculi interossei palmares" RELATED LATIN [Wikipedia:Palmar_interossei_muscles]
synonym: "palmar interosseous of hand" EXACT [FMA:37419]
xref: FMA:37419
xref: http://upload.wikimedia.org/wikipedia/commons/3/39/Gray429.png
xref: MA:0002315
xref: ncithesaurus:Palmar_Hand_Interosseus_Muscle
is_a: UBERON:0001502 ! interosseous muscle of hand
relationship: has_muscle_insertion UBERON:0004302 {source="dbpedia"} ! proximal phalanx
relationship: has_muscle_origin UBERON:0010544 {source="dbpedia"} ! metacarpus skeleton
[Term]
id: UBERON:0006508
name: interosseus muscle
is_a: UBERON:0003661 ! limb muscle
relationship: part_of UBERON:0002470 ! autopod region
[Term]
id: UBERON:0006514
name: pallidum
def: "Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum." [http://www.medterms.com/script/main/art.asp?articlekey=11614]
synonym: "neuraxis pallidum" EXACT [FMA:83684]
synonym: "pallidum of neuraxis" EXACT [FMA:83684]
xref: ABA:PAL
xref: FMA:83684
xref: MA:0000889
property_value: "spatially_disjoint_from" UBERON:0002435
is_a: UBERON:0011300 ! gray matter of telencephalon
relationship: part_of UBERON:0002420 {source="MA"} ! basal ganglion
[Term]
id: UBERON:0006516
name: dorsal pallidum
synonym: "dorsal globus pallidus" RELATED [BTO:0004376]
xref: ABA:PALd
xref: BTO:0004376
xref: FMA:77619
is_a: UBERON:0006514 {source="FMA"} ! pallidum
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001875 {source="BTO"} ! globus pallidus
[Term]
id: UBERON:0006517
name: kidney calyx
def: "Recesses of the kidney pelvis which divides into two wide, cup-shaped major renal calices, with each major calix subdivided into 7 to 14 minor calices. Urine empties into a minor calix from collecting tubules, then passes through the major calix, renal pelvis, and ureter to enter the urinary bladder. (From Moore, Clinically Oriented Anatomy, 3d ed, p211)" [MESH:A.05.810.453.537.503]
synonym: "calyx" BROAD [EMAPA:18676]
synonym: "renal calyx" RELATED [MA:0000369]
xref: EMAPA:18676
xref: GAID:427
xref: MA:0000369
xref: MESH:A.05.810.453.537.503
xref: ncithesaurus:Renal_Calyx
xref: SCTID:276832000
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001224 ! renal pelvis
[Term]
id: UBERON:0006518
name: right lung lobe
synonym: "lobe of the right lung" EXACT [ncithesaurus:Lobe_of_the_Right_Lung]
xref: MA:0001791
xref: ncithesaurus:Lobe_of_the_Right_Lung
xref: SCTID:272654004
is_a: UBERON:0000101 ! lobe of lung
relationship: part_of UBERON:0002167
intersection_of: UBERON:0000101 ! lobe of lung
intersection_of: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0006524
name: alveolar system
def: "System pertaining to a bronchus and alveoli." [BTO:0000136]
synonym: "bronchoalveolar system" RELATED [BTO:0000136]
synonym: "pulmonary alveolar system" EXACT [MP:0010899]
xref: BTO:0000136
xref: EMAPA:19001
xref: EMAPA:19003
xref: EMAPA:19005
xref: EMAPA:19007
xref: EMAPA:19009
xref: MA:0000416
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0006525
name: left lung alveolar system
xref: MA:0001775
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0006524 ! alveolar system
[Term]
id: UBERON:0006526
name: right lung alveolar system
xref: MA:0001784
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0006524 ! alveolar system
[Term]
id: UBERON:0006530
name: seminal fluid
def: "The fluid portion of the semen, in which the spermatozoa are suspended[BTO]." [BTO:0001232]
comment: Usage notes: we follow FMA and make this class a generic superclass of the secretions of different glands (prostate, bulbo-urethreal, seminal vesicle). MA (and ncit) follows a mixture model, where these secretions are part of the seminal fluid // Taxon notes: This term covers a variety of species. Example: In D. melanogaster, seminal fluid proteins affect female receptivity, ovulation, oogenesis, sperm storage, sperm competition and mating plug formation [doi:10.1046/j.1365-2540.2001.00961.x]. Note that ths intology contains a number of subtypes of seminal fluid, defined according to glands (which are more taxonomically restricted)
synonym: "male genital fluid" RELATED []
synonym: "male genital secretion" RELATED []
synonym: "seminal fluid" RELATED [BTO:0001232]
synonym: "seminal plasma" EXACT [BTO:0001232]
xref: BTO:0001232
xref: FMA:62967
xref: MA:0002523
xref: MAT:0000057
xref: MIAA:0000057
is_a: UBERON:0000456 ! bodily secretion
relationship: part_of UBERON:0001968 ! semen
[Term]
id: UBERON:0006531
name: oculomotor muscle
def: "The muscles that move the eye. Included in this group are the medial rectus, lateral rectus, superior rectus, inferior rectus, inferior oblique, superior oblique, musculus orbitalis, and levator palpebrae superioris." [MESH:A.02.633.567.700]
comment: we follow MA in making this a subckass of extra-ocular muscle but the distinction is not clear
xref: MA:0002432
xref: MESH:A.02.633.567.700
xref: ncithesaurus:Oculomotor_Muscle
is_a: UBERON:0001601 {source="MA"} ! extra-ocular muscle
[Term]
id: UBERON:0006532
name: oblique extraocular muscle
xref: MA:0001275
is_a: UBERON:0006531 ! oculomotor muscle
[Term]
id: UBERON:0006533
name: rectus extraocular muscle
xref: MA:0001278
is_a: UBERON:0006531 ! oculomotor muscle
[Term]
id: UBERON:0006534
name: renal convoluted tubule
synonym: "convoluted tubule" EXACT []
xref: MA:0001665
xref: ncithesaurus:Convoluted_Tubule
xref: SCTID:361333002
is_a: UBERON:0007685 ! region of nephron tubule
[Term]
id: UBERON:0006535
name: skin fluid/secretion
synonym: "skin fluid" RELATED []
synonym: "skin secretion" RELATED []
xref: MA:0002537
is_a: UBERON:0000463 ! portion of organism substance
relationship: secreted_by UBERON:0000014
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: secreted_by UBERON:0000014 ! zone of skin
relationship: secreted_by UBERON:0000014 ! zone of skin
[Term]
id: UBERON:0006536
name: male reproductive system fluid/secretion
synonym: "male reproductive system fluid" RELATED []
synonym: "male reproductive system secretion" RELATED []
xref: MA:0002521
is_a: UBERON:0000463 ! portion of organism substance
relationship: secreted_by UBERON:0000079
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: secreted_by UBERON:0000079 ! male reproductive system
relationship: secreted_by UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0006537
name: female reproductive system fluid/secretion
synonym: "female reproductive system fluid" RELATED []
synonym: "female reproductive system secretion" RELATED []
xref: MA:0002510
is_a: UBERON:0000463 ! portion of organism substance
relationship: secreted_by UBERON:0000474
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: secreted_by UBERON:0000474 ! female reproductive system
relationship: secreted_by UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0006538
name: respiratory system fluid/secretion
synonym: "respiratory system fluid" RELATED []
synonym: "respiratory system secretion" RELATED []
xref: MA:0002533
xref: ncithesaurus:Respiratory_System_Fluid_or_Secretion
is_a: UBERON:0000463 ! portion of organism substance
relationship: secreted_by UBERON:0001004
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: secreted_by UBERON:0001004 ! respiratory system
relationship: secreted_by UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0006539
name: mammary gland fluid/secretion
synonym: "lactiferous gland fluid" RELATED []
synonym: "lactiferous gland secretion" RELATED []
synonym: "mammary gland fluid" RELATED []
synonym: "mammary gland secretion" RELATED []
synonym: "secretion of mammary gland" RELATED []
xref: MA:0002505
is_a: UBERON:0000456 ! bodily secretion
relationship: secreted_by UBERON:0001911
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: secreted_by UBERON:0001911 ! mammary gland
relationship: secreted_by UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0006541
name: outer medulla inner stripe loop of henle
xref: EMAPA:29679
xref: MA:0002627
is_a: UBERON:0001288 ! loop of Henle
relationship: part_of UBERON:0004201
intersection_of: UBERON:0001288 ! loop of Henle
intersection_of: part_of UBERON:0004201 ! kidney outer medulla inner stripe
relationship: part_of UBERON:0004201 ! kidney outer medulla inner stripe
[Term]
id: UBERON:0006542
name: outer medulla outer stripe loop of henle
xref: EMAPA:29665
xref: MA:0002630
is_a: UBERON:0001288 ! loop of Henle
relationship: part_of UBERON:0004202
intersection_of: UBERON:0001288 ! loop of Henle
intersection_of: part_of UBERON:0004202 ! kidney outer medulla outer stripe
relationship: part_of UBERON:0004202 ! kidney outer medulla outer stripe
[Term]
id: UBERON:0006544
name: kidney vasculature
subset: vertebrate_core
xref: EMAPA:28457
xref: TAO:0005305
xref: ZFA:0005305
is_a: UBERON:0002201 ! vasculature of trunk
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0006876 ! vasculature of organ
relationship: part_of UBERON:0002113
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0006553
name: renal duct
def: "A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9]
comment: in ZFA this is defined as part of mesonephros
xref: TAO:0005289
xref: ZFA:0005289
is_a: UBERON:0000058 ! duct
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002113
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0006554
name: urinary system structure
comment: editor note: note that we do not explicitly exclude entities such as WBbt:0005777 (excretory duct) here, but they will be automatically classified under this class after reasoning
xref: SCTID:122489005
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001008
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: part_of UBERON:0001008 ! excretory system
relationship: part_of UBERON:0001008 ! excretory system
[Term]
id: UBERON:0006555
name: excretory tube
is_a: UBERON:0000025 ! tube
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001008
intersection_of: UBERON:0000025 ! tube
intersection_of: part_of UBERON:0001008 ! excretory system
relationship: part_of UBERON:0001008 ! excretory system
[Term]
id: UBERON:0006558
name: lymphatic part of lymphoid system
def: "." [Wikipedia:Lymphatic_system]
comment: AO notes: in FMA this is part of the cardiovascular system, but here we treat the CV system as a separate component of the circulatory system from the lymphatic system
synonym: "lymphatic system" EXACT [FMA:7162, MA:0002435]
synonym: "lymphatic tree system" EXACT [FMA:7162]
xref: AAO:0010522
xref: EFO:0000870
xref: EMAPA:18248
xref: FMA:7162
xref: MA:0002961
xref: MESH:A.15.382.520
xref: SCTID:362597000
xref: VHOG:0001761
property_value: UBPROP:0000001 "Part of the circulatory system which consists of a series of vessels which collect blood (exclusive of erythrocytes) which seep through capillary walls and return it to the veins.[AAO]" xsd:string
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001009 ! circulatory system
relationship: part_of UBERON:0002465 ! lymphoid system
relationship: part_of UBERON:0007798 {source="MA"} ! vascular system
[Term]
id: UBERON:0006561
name: non-lymphatic part of lymphoid system
synonym: "non-lymphatic lymphoid system" EXACT [FMA:74623]
xref: FMA:74623
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0002465 ! lymphoid system
[Term]
id: UBERON:0006562
name: pharynx
def: "The pharynx is the part of the digestive system immediately posterior to the mouth[GO]." [GO:0060465]
comment: Taxon notes: This is a dubious grouping class that collects structures as diverse as the chordate pharynx (which is a subclass - UBERON:0001042) and the nematode pharynx. This portion of the ontology should be revised, but this should be done in sync with GO, from which this grouping arises
subset: grouping_class
subset: uberon_slim
synonym: "pharyngeal tube" EXACT []
xref: FBbt:00005380
xref: MAT:0000049
xref: MIAA:0000049
xref: WBbt:0003681
property_value: UBPROP:0000001 "A portion of the respiratory and digestive tracts; its distal limit is the superior part of the esophagus and it connects the nasal and oral cavities with the esophagus and larynx; it contains the valleculae and the pyriform recesses; its upper limits are the nasal cavity and cranial base.[FEED]" xsd:string
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: continuous_with UBERON:0001043 ! esophagus
[Term]
id: UBERON:0006563
name: tunica media of pulmonary trunk
def: "Tunica media of artery which is continuous with the myocardium of right ventricle.[FMA]" [FMA:85030, FMA:FMA]
xref: FMA:85030
is_a: UBERON:0002522 ! tunica media
relationship: part_of UBERON:0002333
intersection_of: UBERON:0002522 ! tunica media
intersection_of: part_of UBERON:0002333 ! pulmonary trunk
relationship: part_of UBERON:0002333 ! pulmonary trunk
[Term]
id: UBERON:0006564
name: superficial palmar arch
synonym: "arcus palmaris superficialis" EXACT [FMA:22834, FMA:TA]
synonym: "Superficial palmar arch" EXACT [FMA:22834]
synonym: "superficial palmar arterial arch" EXACT [FMA:22834]
xref: FMA:22834
xref: MA:0002127
xref: ncithesaurus:Superficial_Palmar_Arch
xref: SCTID:362051006
is_a: UBERON:0004563 ! forelimb digital vein
[Term]
id: UBERON:0006565
name: female urethral meatus
synonym: "external orifice of female urethra" EXACT [FMA:85266]
synonym: "External urethral orifice (female)" EXACT [FMA:85266]
synonym: "female urethral meatus" EXACT [FMA:85266]
synonym: "ostium urethrae externum (urethra feminina)" EXACT [FMA:85266, FMA:TA]
xref: FMA:85266
xref: MA:0002639
xref: SCTID:279479008
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0010418 ! urethral opening
relationship: part_of UBERON:0001334 ! female urethra
[Term]
id: UBERON:0006566
name: left ventricle myocardium
def: "Myocardium of ventricle which is continuous with the tunica media of aorta.[FMA]" [FMA:9558, FMA:FMA]
synonym: "Left ventricular myocardium" EXACT [FMA:9558]
synonym: "myocardium of left ventricle" EXACT [FMA:9558]
xref: FMA:9558
xref: MA:0002983
xref: SCTID:362021000
is_a: UBERON:0001083 ! myocardium of ventricle
relationship: part_of UBERON:0002084
intersection_of: UBERON:0001083 ! myocardium of ventricle
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: continuous_with UBERON:0003618 ! aorta tunica media
relationship: part_of UBERON:0002084 ! heart left ventricle
[Term]
id: UBERON:0006567
name: right ventricle myocardium
def: "Myocardium of ventricle which is continuous with the tunica media of the pulmonary trunk.[FMA]" [FMA:9535, FMA:FMA]
synonym: "myocardium of right ventricle" EXACT [FMA:9535]
synonym: "Right ventricular myocardium" EXACT [FMA:9535]
xref: FMA:9535
xref: MA:0002984
xref: SCTID:362020004
is_a: UBERON:0001083 ! myocardium of ventricle
relationship: part_of UBERON:0002080
intersection_of: UBERON:0001083 ! myocardium of ventricle
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: continuous_with UBERON:0006563 ! tunica media of pulmonary trunk
relationship: part_of UBERON:0002080 ! heart right ventricle
[Term]
id: UBERON:0006568
name: hypothalamic nucleus
synonym: "nucleus of hypothalamus" EXACT [FMA:258762]
xref: BTO:0002449
xref: FMA:258762
xref: MA:0002426
xref: SCTID:279304003
is_a: UBERON:0003048 ! regional part of hypothalamus
is_a: UBERON:0006569 ! diencephalic nucleus
relationship: part_of UBERON:0001898
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0001898 ! hypothalamus
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0006569
name: diencephalic nucleus
xref: TAO:0002191
xref: ZFA:0001659
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002784 ! regional part of diencephalon
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0006570
name: trabecula carnea of right ventricle
synonym: "trabeculae carneae (ventriculus dexter)" EXACT [FMA:7270]
xref: FMA:7270
xref: SCTID:192373001
is_a: UBERON:0002511 ! trabecula carnea
relationship: part_of UBERON:0002080
intersection_of: UBERON:0002511 ! trabecula carnea
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: part_of UBERON:0002080 ! heart right ventricle
[Term]
id: UBERON:0006571
name: trabecula carnea of left ventricle
synonym: "trabeculae carneae (ventriculus sinister)" EXACT [FMA:7271]
xref: FMA:7271
xref: SCTID:190344008
is_a: UBERON:0002511 ! trabecula carnea
relationship: part_of UBERON:0002084
intersection_of: UBERON:0002511 ! trabecula carnea
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: part_of UBERON:0002084 ! heart left ventricle
[Term]
id: UBERON:0006574
name: pectinate line
def: "The pectinate line (anocutaneous line, dentate line, anorectal junction) is a line which divides the upper 2/3rds and lower 1/3rd of the anal canal. Developmentally, this line represents the hindgut-proctodeum junction. It is an important anatomical landmark, and several distinctions can be made based upon the location of a structure relative to this line:" [Wikipedia:Pectinate_line]
comment: FMA also has FMA:29321 but it's not clear how this differs
synonym: "dentate line" RELATED [Wikipedia:Pectinate_line]
synonym: "Hilton's 'white line'" RELATED [EMAPA:19159]
synonym: "linea anocutanea" RELATED LATIN [Wikipedia:Pectinate_line]
synonym: "pectinate line of anal canal" EXACT [FMA:75383]
synonym: "recto-anal junction" RELATED [Wikipedia:Pectinate_line]
synonym: "site of anal membrane" RELATED [EMAPA:19159]
xref: EMAPA:19159
xref: FMA:75383
xref: http://upload.wikimedia.org/wikipedia/commons/7/7b/Hemorrhoid.png
xref: ncithesaurus:Pectinate_Line
xref: SCTID:245445008
xref: Wikipedia:Pectinate_line
is_a: UBERON:0000015 ! anatomical boundary
relationship: adjacent_to UBERON:0000931
relationship: adjacent_to UBERON:0001046
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0000931 ! proctodeum
intersection_of: adjacent_to UBERON:0001046 ! hindgut
relationship: adjacent_to UBERON:0000931 ! proctodeum
relationship: adjacent_to UBERON:0001046 ! hindgut
relationship: part_of UBERON:0000159 ! anal canal
[Term]
id: UBERON:0006575
name: mantle
def: "A fold or lobe or pair of lobes of the body wall of a mollusk or brachiopod that in shell-bearing forms lines the shell and bears shell-secreting glands." [BTO:0000825, Wipikedia:Mantle_(mollusc)]
synonym: "mantle tissue" RELATED [BTO:0000825]
synonym: "pallium" RELATED [Wipikedia:Mantle_(mollusc)]
xref: BTO:0000825
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0006580
name: mantle cavity
def: "Within the shell is a fleshy layer of tissue called the mantle; there is a cavity (the mantle cavity) between the mantle and the body wall proper." [BTO:0000826]
xref: BTO:0000826
is_a: UBERON:0002553 ! anatomical cavity
relationship: surrounded_by UBERON:0006575
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: surrounded_by UBERON:0006575 ! mantle
relationship: surrounded_by UBERON:0006575 ! mantle
[Term]
id: UBERON:0006581
name: mantle muscle
xref: BTO:0000827
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0006575
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0006575 ! mantle
relationship: part_of UBERON:0006575 ! mantle
[Term]
id: UBERON:0006582
name: statolith
def: "Acellular mineralized structure located in the statocyst (balance organ) of some aquatic invertebrates[WP,CJM]." [UBERON:cjm]
property_value: RO:0002161 NCBITaxon:7742
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0006583 ! statocyst
[Term]
id: UBERON:0006583
name: statocyst
def: "Acellular mineralized structure located in the statocyst (balance organ) of some aquatic invertebrates[WP]." [Wikipedia:Statocyst]
comment: todo - add statolith organ
subset: organ_slim
property_value: RO:0002161 NCBITaxon:7742
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0006585
name: vestibular organ
synonym: "balance organ" EXACT [UBERON:cjm]
xref: NIF_GrossAnatomy:birnlex_2519
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0004681
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0004681 ! vestibular system
relationship: part_of UBERON:0004681 ! vestibular system
[Term]
id: UBERON:0006586
name: otolymph
xref: MA:0002527
xref: ncithesaurus:Otolymph
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0006587
name: ligamentum venosum
def: "The ligamentum venosum is the fibrous remnant of the ductus venosus of the fetal circulation. Usually, it is attached to the left branch of the portal vein within the porta hepatis (gateway to the liver). It may be continuous with the round ligament of liver (ligamentum teres hepatis). It is invested by the peritoneal folds of the lesser omentum within a fissure on the inferior surface of the liver between the caudate and main parts of the left lobe." [Wikipedia:Ligamentum_venosum]
synonym: "ligament of arantius" EXACT [FMA:14080]
synonym: "ligamentum venosum (ductus venosus)" EXACT [FMA:14080]
synonym: "ligamentum venosum of liver" EXACT [FMA:14080]
synonym: "ligamentum venosus" EXACT [Wikipedia:Ligamentum_venosum]
xref: FMA:14080
xref: http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png
xref: SCTID:80391004
is_a: UBERON:0006592 {source="FMA"} ! transformed vein
relationship: develops_from UBERON:0002083 ! ductus venosus
[Term]
id: UBERON:0006588
name: round ligament of liver
def: "a degenerative string of tissue that exists in the free edge of the falciform ligament of the liver. Anatomically, the round ligament divides the left part of the liver into medial and lateral sections. The round ligament represents the remnant of the fetal left umbilical vein. The round ligament therefore only exists in mammals. Prenatally and for a month or two after birth, the left umbilical vein is patent, subsequently degenerating to fibrous tissue, the round ligament. The umbilical vein/round ligament inserts around the umbilicus and is an important landmark of the inner surface of the anterior abdominal wall[WP]." [Wikipedia:Round_ligament_of_liver]
synonym: "ligamentum teres" BROAD [Wikipedia:Round_ligament_of_liver]
synonym: "ligamentum teres hepatis" EXACT [FMA:14079, FMA:TA]
synonym: "ligamentum teres hepatitis" EXACT [Wikipedia:Round_ligament_of_liver]
synonym: "ligamentum teres of liver" EXACT [FMA:14079]
xref: FMA:14079
xref: ncithesaurus:Round_Ligament_of_the_Liver
xref: SCTID:262209009
is_a: UBERON:0006592 ! transformed vein
disjoint_from: UBERON:0006589 ! round ligament of uterus
[Term]
id: UBERON:0006589
name: round ligament of uterus
def: "The round ligament of the uterus originates at the uterine horns, in the parametrium. It leaves the pelvis via the deep inguinal ring, passes through the inguinal canal and continues on to the labia majora where its fibers spread and mix with the tissue of the mons pubis[WP]. A fibromuscular band that attaches to the uterus and then passes along the broad ligament, out through the inguinal ring, and into the labium majus[MESH]." [MESH:A.02.513.803, Wikipedia:Round_ligament_of_uterus]
synonym: "Hunter's ligament" EXACT [FMA:20420]
synonym: "ligamentum teres of uterus" EXACT []
synonym: "ligamentum teres uteri" EXACT [Wikipedia:Round_ligament_of_uterus]
synonym: "ligamentum teres uteri" RELATED LATIN [Wikipedia:Round_ligament_of_uterus]
synonym: "round ligament" BROAD [GAID:130]
synonym: "round ligament of the uterus" EXACT [Wikipedia:Round_ligament_of_uterus]
xref: FMA:20420
xref: GAID:130
xref: http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1138.png
xref: ncithesaurus:Round_Ligament_of_the_Uterus
xref: SCTID:245495009
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament
relationship: develops_from UBERON:0004346 {source="Wikipedia"} ! gubernaculum
[Term]
id: UBERON:0006590
name: vestigial embryonic structure
def: "Anatomical structure which is a remnant of an embryonic structure in the postnatal period. Examples: median umbilical ligament, paroohoron, prostatic utricle, ligamentum arteriosum.[FMA]" [FMA:16558, FMA:FMA]
xref: FMA:16558
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0006591
name: transformed artery
xref: FMA:14076
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006590 ! vestigial embryonic structure
relationship: develops_from UBERON:0001637
intersection_of: UBERON:0006590 ! vestigial embryonic structure
intersection_of: develops_from UBERON:0001637 ! artery
relationship: develops_from UBERON:0001637 ! artery
[Term]
id: UBERON:0006592
name: transformed vein
xref: FMA:14078
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006590 ! vestigial embryonic structure
relationship: develops_from UBERON:0001638
intersection_of: UBERON:0006590 ! vestigial embryonic structure
intersection_of: develops_from UBERON:0001638 ! vein
relationship: develops_from UBERON:0001638 ! vein
[Term]
id: UBERON:0006594
name: chorda gubernaculum
def: "A portion of the gubernaculum testis and round ligament that develops in the body wall of the embryo." [Dorlands_Medical_Dictionary:MerckSource]
xref: BTO:0002814
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006590 ! vestigial embryonic structure
relationship: part_of UBERON:0004346 ! gubernaculum
[Term]
id: UBERON:0006595
name: presumptive endoderm
xref: AAO:0000471
xref: EFO:0003437
xref: TAO:0000416
xref: ZFA:0000416
is_a: UBERON:0006598 ! presumptive structure
[Term]
id: UBERON:0006596
name: presumptive blood
xref: AAO:0000468
xref: EFO:0003439
xref: TAO:0000568
xref: ZFA:0000568
is_a: UBERON:0006598 ! presumptive structure
[Term]
id: UBERON:0006597
name: quadrate bone
def: "Ossified pars articularis of the palatoquadrate cartilage." [AAO:0000525, Wikipedia:Quadrate_bone]
comment: Taxon notes: In snakes, the quadrate bone has become elongated and very mobile, and contributes greatly to their ability to swallow very large prey items. In mammals the articular and quadrate bones have migrated to the middle ear and are known as the malleus and incus. AO notes: Endochondral bone that commonly articulates with the ectopterygoid anteriorly, the metapterygoid dorsally, and the symplectic postero-medially. The quadrate is formed from the posterior part of the palatoquadrate cartilage, or pars quadrata. The quadrate is a paired bone.[TAO:0000621]
synonym: "quadrate" EXACT [TAO:0000621]
synonym: "quadrate - incus" BROAD [VHOG:0000689]
synonym: "quadrate bone" EXACT [AAO:0000525]
xref: AAO:0000525
xref: EFO:0003547
xref: TAO:0000621
xref: VHOG:0000689
xref: ZFA:0000621
property_value: "homologous_to" UBERON:0001688
property_value: RO:0002161 NCBITaxon:40674
property_value: UBPROP:0000001 "Endochondral bone that commonly articulates with the ectopterygoid anteriorly, the metapterygoid dorsally, and the symplectic postero-medially. The quadrate is formed from the posterior part of the palatoquadrate cartilage, or pars quadrata. The quadrate is a paired bone.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps quadrate-hyomandibula joint (TAO:0001801)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps quadrate-metapterygoid joint (TAO:0001803)[TAO]" xsd:string
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0011597 ! bone of upper jaw
relationship: develops_from UBERON:0004752 {source="ZFA"} ! palatoquadrate cartilage
relationship: part_of UBERON:0003108 {source="AAO"} ! suspensorium
relationship: part_of UBERON:0003277 ! skeleton of upper jaw
[Term]
id: UBERON:0006598
name: presumptive structure
synonym: "presumptive structures" EXACT [ZFA:0001116]
xref: AAO:0000479
xref: TAO:0001116
xref: ZFA:0001116
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006599
name: presumptive hypochord
xref: AAO:0000474
xref: EFO:0003453
xref: TAO:0001217
xref: ZFA:0001217
is_a: UBERON:0006598 ! presumptive structure
[Term]
id: UBERON:0006600
name: presumptive enteric nervous system
xref: AAO:0000472
xref: EFO:0003462
xref: TAO:0001334
xref: ZFA:0001334
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_from UBERON:0005428 {source="NBK10065"} ! vagal neural crest
[Term]
id: UBERON:0006601
name: presumptive ectoderm
def: "Presumptive structure at the animal poll of the blastula that will develop into ectoderm via the epiblast. Determined by fate mapping." [ZFA:0001376]
comment: note: AAO:0000473
synonym: "presumptive epidermis" RELATED [ZFA:0001376]
xref: AAO:0000470
xref: EFO:0003466
xref: TAO:0001376
xref: XAO:0004132
xref: ZFA:0001376
is_a: UBERON:0006598 ! presumptive structure
[Term]
id: UBERON:0006603
name: presumptive mesoderm
xref: AAO:0000476
xref: EFO:0003467
xref: TAO:0001377
xref: ZFA:0001377
is_a: UBERON:0006598 ! presumptive structure
[Term]
id: UBERON:0006604
name: lamina orbitonasalis
def: "Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anterolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially." [ZFA:0001503]
synonym: "laminas orbitonasalis" EXACT [ZFA:0001503]
xref: AAO:0000262
xref: TAO:0001503
xref: ZFA:0001503
property_value: UBPROP:0000001 "In the larva, structure that is fused to the wall of the braincase, lateral to the olfactory foramen, and separates the nasal capsule and orbit. In the adult frog it constitutes the ventral part of postnasal wall.[AAO]" xsd:string
is_a: UBERON:0003932 ! cartilaginous element of chondrocranium
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0006605
name: tectum synoticum
def: "Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium." [ZFA:0001506]
comment: AAO def - "Roof between frontoparietal foramen and otic capsules, confluent with taenia tecti marginales." [AAO:0010129]. In TAO/ZFA this gives rise to supraoccipital and sphenotic // posterior tectum synoticum in humans - a skull roof element of the chondrocranium - temporarily exists in the territory of the interparietal during fetal life, and may be resposible for the sutura mendosa [PMC1259625]
xref: AAO:0010129
xref: TAO:0001506
xref: ZFA:0001506
property_value: UBPROP:0000001 "Roof between frontoparietal foramen and otic capsules, confluent with taenia tecti marginales.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of otic and occipital (AAO:0000993)[AAO]" xsd:string
is_a: UBERON:0003932 {source="ZFA"} ! cartilaginous element of chondrocranium
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001703 {source="ZFA"} ! neurocranium
[Term]
id: UBERON:0006606
name: mandibular symphysis
def: "A cartilaginous joint that connects left and right mandibles/dentary bones" [Wikipedia:Symphysis_menti, ZFA:0005488]
comment: Taxon notes: in snakes, the mandibular symphysis is composed of soft tissues, allowing independent movement of each mandible[Kardong] Editor notes: this is placed as part of lower jaw region, as in this ontology the skeleton does not include joints
subset: vertebrate_core
synonym: "mental symphysis" RELATED [Wikipedia:Symphysis_menti]
synonym: "symphysis mandibulae" RELATED LATIN [Wikipedia:Symphysis_menti]
synonym: "symphysis menti" EXACT [MA:0001490]
xref: AAO:0000277
xref: FMA:75779
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png
xref: MA:0001490
xref: TAO:0001851
xref: ZFA:0005488
property_value: UBPROP:0000001 "Joint that articulates the left and right dentary bones. Mandibular symphysis is unpaired.[TAO]" xsd:string
is_a: UBERON:0002216 {source="FMA"} ! symphysis
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: connects UBERON:0004742 {notes="connects adjacent mandibles"} ! dentary
relationship: connects UBERON:0004742 {cardinality="2"} ! dentary
relationship: part_of UBERON:0001710 ! lower jaw region
[Term]
id: UBERON:0006607
name: medial umbilical ligament
def: "The medial umbilical ligament is a paired structure found in human anatomy. It is on the deep surface of the anterior abdominal wall, and is covered by the medial umbilical folds." [Wikipedia:Medial_umbilical_ligament]
synonym: "chorda arteria umbilicalis; ligamentum umbilicale mediale" RELATED LATIN [Wikipedia:Medial_umbilical_ligament]
synonym: "ligamentum umbilicale mediale" EXACT [FMA:14077]
synonym: "medial umbilical fold" RELATED [Wikipedia:Medial_umbilical_ligament]
synonym: "medial umbilical ligaments" RELATED [Wikipedia:Medial_umbilical_ligament]
xref: FMA:14077
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1037.png
xref: SCTID:279427007
is_a: UBERON:0006591 ! transformed artery
[Term]
id: UBERON:0006608
name: corpus cavernosum clitoridis
def: "The corpus cavernosum clitoridis is one of a pair of sponge-like regions of erectile tissue which contain most of the blood in the clitoris during clitoral erection. This is homologous to the corpus cavernosum penis in the male; the body of the clitoris contains erectile tissue in a pair of corpora cavernosa (literally \"cave-like bodies\"), with a recognisably similar structure." [Wikipedia:Corpus_cavernosum_of_clitoris]
synonym: "cavernous body of clitoris" RELATED [BTO:0002018]
synonym: "clitoral corpus cavernosum" RELATED [BTO:0002018]
synonym: "corpus cavernosum" RELATED [BTO:0002018]
synonym: "corpus cavernosum clitoridis" RELATED LATIN [Wikipedia:Corpus_cavernosum_of_clitoris]
xref: BTO:0002018
xref: FMA:20172
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Clitoris_inner_anatomy.gif
xref: SCTID:16657007
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006609 ! corpus cavernosum
relationship: part_of UBERON:0002411
intersection_of: UBERON:0006609 ! corpus cavernosum
intersection_of: part_of UBERON:0002411 ! clitoris
relationship: part_of UBERON:0002411 ! clitoris
[Term]
id: UBERON:0006609
name: corpus cavernosum
def: "." [Wikipedia:Corpus_cavernosum]
is_a: UBERON:0008324 ! erectile tissue
[Term]
id: UBERON:0006610
name: tunica albuginea
def: "White covering over one of: penis, testicles or ovaries." [Wikipedia:Tunica_albuginea_of_testis_%28ovaries%29_%28penis%29]
xref: ncithesaurus:Tunica_Albuginea
is_a: UBERON:0000158 ! membranous layer
[Term]
id: UBERON:0006611
name: exoskeleton
def: "Exoskeleton or shell, including those of mollusks, turtles, insects and crustaceans." [Wikipedia:Exoskeleton]
comment: Editors note: consider adding a separate class for dermal skeleton. See also xref: XAO:0004025
subset: grouping_class
synonym: "shell" RELATED [BTO:0004659]
synonym: "test" NARROW []
xref: BTO:0004659
is_a: UBERON:0002199 ! integument
[Term]
id: UBERON:0006612
name: shell
def: "A rigid covering that envelops an object." [ncithesaurus:Shell, Wikipedia:Seashell]
comment: Editor notes: may be obsoleted after integumental system overhaul
subset: grouping_class
xref: ncithesaurus:Shell
is_a: UBERON:0002416 ! integumental system
[Term]
id: UBERON:0006614
name: aponeurosis
def: "Aponeuroses are layers of flat broad tendons. They have a shiny, whitish-silvery color, and are histologically similar to tendons, but are very sparingly supplied with blood vessels and nerves. When dissected, aponeuroses are papery, and peel off by sections. The primary regions with thick aponeurosis is in the ventral abdominal region, the dorsal lumbar region, and in the palmar region. Their primary function is to join muscles and the body parts the muscles act upon." [Wikipedia:Aponeurosis]
comment: AO notes: in ZFA, aponeuroses are subtypes of tendons, but this is inconsistent with tendons being muscle-bone connections
synonym: "aponeuroses" RELATED PLURAL [Wikipedia:Aponeurosis]
synonym: "aponeurotic" RELATED [Wikipedia:Aponeurosis]
xref: AEO:0000092
xref: EHDAA2:0003092
xref: FMA:9722
xref: http://upload.wikimedia.org/wikipedia/commons/e/e6/Aponeurosis.png
xref: ncithesaurus:Aponeurosis
xref: SCTID:331712004
xref: ZFA:0005652
is_a: UBERON:0000158 {source="FMA"} ! membranous layer
relationship: part_of UBERON:0001630 {source="FMA"} ! muscle organ
[Term]
id: UBERON:0006615
name: venous sinus
def: "a large vein or channel for the circulation of venous blood" [http://medical-dictionary.thefreedictionary.com/venous+sinus]
comment: todo - add subclasses
xref: EMAPA:18633
xref: MA:0000070
xref: ncithesaurus:Venous_Sinus
xref: SCTID:341586007
is_a: UBERON:0003920 ! venous blood vessel
[Term]
id: UBERON:0006616
name: right external ear
synonym: "right auricular region" BROAD [FMA:53643]
xref: FMA:53643
xref: SCTID:368567003
is_a: UBERON:0001691 ! external ear
relationship: in_right_side_of UBERON:0000468
intersection_of: UBERON:0001691 ! external ear
intersection_of: in_right_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_right_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0006617
name: left external ear
synonym: "left auricular region" BROAD [FMA:53644]
xref: FMA:53644
xref: SCTID:368589004
is_a: UBERON:0001691 ! external ear
relationship: in_left_side_of UBERON:0000468
intersection_of: UBERON:0001691 ! external ear
intersection_of: in_left_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0006618
name: atrium auricular region
def: "A small conical pouch projections located on the upper anterior portion of each atrium of the heart." [MP:0010489, Wikipedia:Auricular_appendage]
synonym: "atrial auricle" EXACT [MP:0010489]
synonym: "auricle of heart" EXACT [FMA:77110]
synonym: "auricula atrii" EXACT [FMA:77110, FMA:TA]
synonym: "auricular appendage" EXACT []
synonym: "heart atrium auriclular region" EXACT [MP:0010489]
xref: FMA:77110
xref: MA:0002955
xref: SCTID:305223006
is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0006630
name: left atrium auricular region
def: "a muscular pouch connected to the left atrium of the heart" [Wikipedia:Left_atrial_appendage]
synonym: "auricula sinistra" EXACT [Wikipedia:Right_atrial_appendage]
synonym: "auricula sinistra" RELATED LATIN [Wikipedia:Left_atrial_appendage]
synonym: "left atrial appendage" RELATED [MA:0001869]
synonym: "left auricle" EXACT [FMA:7219]
synonym: "left auricula" EXACT [Wikipedia:Right_atrial_appendage]
synonym: "left auricular appendix" EXACT [Wikipedia:Right_atrial_appendage]
synonym: "left auricular region" BROAD [EMAPA:16816]
xref: EHDAA2:0000276
xref: EHDAA:5343
xref: EMAPA:16816
xref: FMA:7219
xref: http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray494.png
xref: MA:0001869
xref: SCTID:277930000
xref: VHOG:0001229
is_a: UBERON:0006618 ! atrium auricular region
relationship: part_of UBERON:0002079
intersection_of: UBERON:0006618 ! atrium auricular region
intersection_of: part_of UBERON:0002079 ! left atrium
relationship: part_of UBERON:0002079 ! left atrium
[Term]
id: UBERON:0006631
name: right atrium auricular region
def: "a small conical muscular pouch attached to the right atrium of the heart." [Wikipedia:Right_atrial_appendage]
synonym: "auricula dextra" EXACT [Wikipedia:Right_atrial_appendage]
synonym: "right atrial appendage" RELATED [MA:0001870]
synonym: "right auricle" EXACT [FMA:7218]
synonym: "right auricula" EXACT [Wikipedia:Right_atrial_appendage]
synonym: "right auricular region" BROAD [EMAPA:16824]
synonym: "right auriculur appendix" EXACT [Wikipedia:Right_atrial_appendage]
xref: EHDAA2:0000291
xref: EHDAA:5352
xref: EMAPA:16824
xref: FMA:7218
xref: MA:0001870
xref: SCTID:277713005
xref: VHOG:0001232
is_a: UBERON:0006618 ! atrium auricular region
relationship: part_of UBERON:0002078
intersection_of: UBERON:0006618 ! atrium auricular region
intersection_of: part_of UBERON:0002078 ! right atrium
relationship: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0006632
name: musculo-phrenic artery
synonym: "musculophrenic artery" EXACT [FMA:10645]
xref: EMAPA:19215
xref: FMA:10645
xref: SCTID:244242003
is_a: UBERON:0004573 ! systemic artery
relationship: branch_of UBERON:0002456 ! internal thoracic artery
relationship: part_of UBERON:0002456 ! internal thoracic artery
[Term]
id: UBERON:0006633
name: coracoid process of scapula
def: "The coracoid process is a small hook-like structure on the lateral edge of the superior anterior portion of the scapula. Pointing laterally forward, it, together with the acromion, serves to stabilize the shoulder joint. It is palpable in the deltopectoral groove between the deltoid and pectoralis major muscles. It is the site of attachment for several structures: * The pectoralis minor muscle - to 3rd to 5th ribs. * The short head of biceps brachii muscle - to Radial tuberosity. * The coracobrachialis muscle - to medial humerus. * The coracoclavicular ligament - to the clavicle. (The ligament is formed by the conoid ligament and trapezoid ligament.) * The coracoacromial ligament - to the acromion[WP]." [Wikipedia:Coracoid_process]
synonym: "coracoid process" EXACT [Wikipedia:Coracoid_process]
synonym: "coracoid process of the scapula" EXACT [Wikipedia:Coracoid_process]
synonym: "processus coracoideus" RELATED LATIN [Wikipedia:Coracoid_process]
xref: EMAPA:25121
xref: FMA:13455
xref: http://upload.wikimedia.org/wikipedia/commons/a/a6/Gray205_left_scapula_lateral_view.png
xref: SCTID:181912007
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0001124 {source="FMA", source="EMAPA"} ! pectoral limb scapula
[Term]
id: UBERON:0006634
name: lingual vein
def: "The lingual veins begin on the dorsum, sides, and under surface of the tongue, and, passing backward along the course of the lingual artery, end in the internal jugular vein. The vena comitans of the hypoglossal nerve (ranine vein), a branch of considerable size, begins below the tip of the tongue, and may join the lingual; generally, however, it passes backward on the Hyoglossus, and joins the common facial." [Wikipedia:Lingual_veins]
synonym: "deep lingual veins" RELATED [Wikipedia:Lingual_veins]
synonym: "lingual vein" RELATED [Wikipedia:Lingual_veins]
synonym: "ranine" RELATED [Wikipedia:Lingual_veins]
synonym: "ranine vein" RELATED [Wikipedia:Lingual_veins]
synonym: "vena lingualis" RELATED LATIN [Wikipedia:Lingual_veins]
xref: AAO:0010514
xref: EMAPA:19312
xref: FMA:14326
xref: http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png
xref: SCTID:181375007
property_value: UBPROP:0000001 "Vein which collects blood from the tongue and drains into the external jugular vein.[AAO]" xsd:string
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0006635
name: anterior abdominal wall
synonym: "ventral abdominal wall" EXACT []
xref: EHDAA:5976
xref: EMAPA:17744
xref: FMA:14627
xref: SCTID:362696003
xref: VHOG:0000764
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0003697 ! abdominal wall
[Term]
id: UBERON:0006636
name: lumbar artery
def: "The lumbar arteries are in series with the intercostals. They are usually four in number on either side, and arise from the back of the aorta, opposite the bodies of the upper four lumbar vertebrC&. A fifth pair, small in size, is occasionally present: they arise from the middle sacral artery. They run lateralward and backward on the bodies of the lumbar vertebrC&, behind the sympathetic trunk, to the intervals between the adjacent transverse processes, and are then continued into the abdominal wall. The arteries of the right side pass behind the inferior vena cava, and the upper two on each side run behind the corresponding crus of the diaphragm. The arteries of both sides pass beneath the tendinous arches which give origin to the Psoas major, and are then continued behind this muscle and the lumbar plexus. They now cross the Quadratus lumborum, the upper three arteries running behind, the last usually in front of the muscle. At the lateral border of the Quadratus lumborum they pierce the posterior aponeurosis of the Transversus abdominis and are carried forward between this muscle and the Obliquus internus. They anastomose with the lower intercostal, the subcostal, the iliolumbar, the deep iliac circumflex, and the inferior epigastric arteries." [Wikipedia:Lumbar_arteries]
synonym: "arteria lumbalis" RELATED [Wikipedia:Lumbar_arteries]
synonym: "arteriae lumbales" RELATED LATIN [Wikipedia:Lumbar_arteries]
synonym: "Lumbar arterial tree" EXACT [FMA:14735]
synonym: "lumbar artery" RELATED [Wikipedia:Lumbar_arteries]
xref: EMAPA:19096
xref: FMA:14735
xref: http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png
xref: ncithesaurus:Lumbar_Artery
xref: SCTID:244285007
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0006637
name: coeliac trunk
def: "The celiac artery, also known as the celiac trunk, is the first major branch of the abdominal aorta. Branching from the aorta 'anterior to the upper part of T12' vertebra in humans, it is one of three anterior/ midline branches of the abdominal aorta." [Wikipedia:Celiac_artery]
synonym: "arteria celiaca" RELATED [Wikipedia:Celiac_artery]
synonym: "celiac axis" RELATED [Wikipedia:Celiac_artery]
synonym: "celiac trunk" RELATED [Wikipedia:Celiac_artery]
synonym: "coeliac axis" RELATED [Wikipedia:Celiac_artery]
synonym: "coeliac trunck" RELATED [Wikipedia:Celiac_artery]
synonym: "coeliac trunk" EXACT [FMA:14812]
synonym: "coeliac trunk" RELATED [Wikipedia:Celiac_artery]
synonym: "coeliaco-mesenteric trunk" EXACT [FMA:14812]
synonym: "Haller's tripus" EXACT [FMA:14812]
synonym: "truncus coeliacus" RELATED [Wikipedia:Celiac_artery]
xref: EHDAA2:0004519
xref: EMAPA:19212
xref: FMA:14812
xref: galen:CeliacTrunk
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001640 ! celiac artery
[Term]
id: UBERON:0006638
name: median umbilical ligament
def: "The median umbilical ligament is a structure in human anatomy. It is a shrivelled piece of tissue that represents the remnant of the embryonic urachus. It extends from the apex of the bladder to the umbilicus, on the deep surface of the anterior abdominal wall. It is unpaired. It is covered by the median umbilical fold Lateral to this structure are the medial umbilical ligament (which is a different structure, not to be confused) and the lateral umbilical ligament." [Wikipedia:Median_umbilical_ligament]
synonym: "ligamentum umbilicale medianum" RELATED LATIN [Wikipedia:Median_umbilical_ligament]
synonym: "median umbilical fold" RELATED [Wikipedia:Median_umbilical_ligament]
synonym: "middle umbilical ligament" RELATED [Wikipedia:Median_umbilical_ligament]
xref: EMAPA:29637
xref: FMA:16568
xref: http://upload.wikimedia.org/wikipedia/commons/e/ef/Gray1036.png
xref: SCTID:89583000
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: develops_from UBERON:0002068 ! urachus
relationship: part_of UBERON:0001008 ! excretory system
[Term]
id: UBERON:0006639
name: crus penis
def: "For their anterior three-fourths the corpora cavernosa penis lie in intimate apposition with one another, but behind they diverge in the form of two tapering processes, known as the crura, which are firmly connected to the ischial rami. Traced from behind forward, each crus begins by a blunt-pointed process in front of the tuberosity of the ischium, along the perineal surface of the conjoined (ischiopubic) ramus. Just before it meets its fellow it presents a slight enlargement, named by Georg Ludwig Kobelt (1804-1857) the bulb of the corpus cavernosum penis. Beyond this point the crus undergoes a constriction and merges into the corpus cavernosum proper, which retains a uniform diameter to its anterior end." [Wikipedia:Crus_of_penis]
synonym: "crura of penis" RELATED [Wikipedia:Crus_of_penis]
synonym: "crus of penis" EXACT [FMA:18248]
synonym: "crus penis" RELATED LATIN [Wikipedia:Crus_of_penis]
xref: EMAPA:19294
xref: FMA:18248
xref: http://upload.wikimedia.org/wikipedia/commons/e/ef/Gray1154.png
xref: SCTID:362270006
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0004713 ! corpus cavernosum penis
[Term]
id: UBERON:0006640
name: crus of clitoris
def: "The clitoral crura are an internal portion of the clitoris. A single one is called a clitoral crus. They are shaped like an inverted \"V\" with the vertex of the \"V\" connecting to the clitoral body. They are near the vestibular bulbs, also known as the clitoral bulbs. They are to the left and right of the urethra, urethral sponge, and vagina and extend back toward the pubic bone. The clitoral crura contain muscles called the ischiocavernosi. \"Crus\" basically translates as \"leg\", thus \"crura\" as \"legs\". Each clitoral crus connects to the rami of the pubis and the ischium. The crura, like the rest of the clitoris, are composed of two corpus cavernosa muscles, which are made up of erectile tissue." [Wikipedia:Crus_of_clitoris]
synonym: "Clitoris crus" EXACT [FMA:20175]
synonym: "crura of clitoris" RELATED [Wikipedia:Clitoral_crura]
synonym: "crus clitoridis" RELATED [Wikipedia:Clitoral_crura]
synonym: "crus of clitoris" RELATED [Wikipedia:Clitoral_crura]
xref: EMAPA:19169
xref: EMAPA:30821
xref: FMA:20175
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Clitoris_inner_anatomy.gif
xref: SCTID:279860002
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0006608 ! corpus cavernosum clitoridis
[Term]
id: UBERON:0006641
name: appendix epididymis
def: "On the head of the epididymis is a small stalked appendage (sometimes duplicated). It is named the appendix of the epididymis (or pedunculated hydatid), and is usually regarded as a detached efferent duct. This structure is derived from the Wolffian duct as opposed to the appendix testis which is derived from the mullerian duct remnant." [Wikipedia:Appendix_of_epididymidis]
synonym: "appendix epididymidis" RELATED LATIN [Wikipedia:Appendix_of_epididymidis]
synonym: "appendix epididymis" RELATED [Wikipedia:Appendix_of_epididymidis]
synonym: "appendix of the epididymis" RELATED [Wikipedia:Appendix_of_epididymidis]
synonym: "epididymal appendix" EXACT [FMA:18268]
synonym: "epididymis appendix" EXACT [FMA:18268]
xref: EMAPA:19086
xref: FMA:18268
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1148.png
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0005160 ! vestigial structure
relationship: develops_from UBERON:0003074 ! mesonephric duct
relationship: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0006642
name: muscle layer of oviduct
synonym: "Muscle layer of fallopian tube" EXACT [FMA:18318]
synonym: "Muscle layer of oviduct" EXACT [FMA:18318]
synonym: "Muscular coat of uterine tube" EXACT [FMA:18318]
synonym: "Muscular layer of uterine tube" EXACT [FMA:18318]
synonym: "Muscularis of uterine tube" EXACT [FMA:18318]
synonym: "Tunica muscularis (Tuba uterina)" EXACT [FMA:18318]
synonym: "tunica muscularis tubae uterinae" EXACT [FMA:18318, FMA:TA]
synonym: "Uterine tubal muscularis" EXACT [FMA:18318]
xref: EMAPA:29046
xref: FMA:18318
xref: SCTID:259488000
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0003889
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0003889 ! fallopian tube
relationship: part_of UBERON:0003889 ! fallopian tube
[Term]
id: UBERON:0006643
name: tunica albuginea of testis
def: "The Tunica Albuginea is the fibrous covering of the testis. It is a dense blue-white membrane, composed of bundles of white fibrous tissue which interlace in every direction. It is covered by the tunica vaginalis, except at the points of attachment of the epididymis to the testis, and along its posterior border, where the spermatic vessels enter the gland. It is applied to the tunica vasculosa over the glandular substance of the testis, and, at its posterior border, is reflected into the interior of the gland, forming an incomplete vertical septum, called the mediastinum testis (corpus Highmori)." [Wikipedia:Tunica_albuginea_of_testis_%28ovaries%29_%28penis%29_of_testis]
synonym: "tunica albuginea %28testicles%29" RELATED [Wikipedia:Tunica_albuginea_of_testis]
synonym: "Tunica albuginea (testis)" EXACT [FMA:19843]
synonym: "tunica albuginea testis" RELATED LATIN [Wikipedia:Tunica_albuginea_of_testis]
xref: EHDAA2:0002096
xref: EHDAA:9388
xref: EMAPA:19289
xref: FMA:19843
xref: SCTID:279604006
xref: VHOG:0000801
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006610 ! tunica albuginea
relationship: part_of UBERON:0000473
intersection_of: UBERON:0006610 ! tunica albuginea
intersection_of: part_of UBERON:0000473 ! testis
relationship: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0006644
name: tunica albuginea of ovary
def: "The tunica albuginea is the fibrous envelope of the corpora cavernosa penis. It is comprised of approximately 5% elastin, an extensible tissue that is primarily made up of the amino acids glycine, valine, alanine, and proline. The majority of the remaining tissue is comprised of collagen, which is made up of lysine, proline, glycine, alanine, and other amino acids . The tunica albuginea is directly involved in maintaining an erection; that is due to Buck's fascia constricting the deep dorsal vein of the penis, preventing blood from leaving and thus sustaining the erect state. The trabeculC& of the tunica albuginea are more delicate, nearly uniform in size, and the meshes between them smaller than in the corpora cavernosa penis: their long diameters, for the most part, corresponding with that of the penis. The external envelope or outer coat of the corpus spongiosum is formed partly of unstriped muscular fibers, and a layer of the same tissue immediately surrounds the canal of the urethra." [Wikipedia:Tunica_albuginea_of_testis_%28ovaries%29_%28penis%29_%28penis%29]
synonym: "tunica albuginea corporum cavernosorum, tunica albuginea corporis spongiosi" RELATED LATIN [Wikipedia:Tunica_albuginea_%28penis%29]
xref: EMAPA:30522
xref: FMA:18630
xref: SCTID:258409003
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006610 ! tunica albuginea
relationship: part_of UBERON:0000992
intersection_of: UBERON:0006610 ! tunica albuginea
intersection_of: part_of UBERON:0000992 ! female gonad
relationship: part_of UBERON:0000992 ! female gonad
relationship: part_of UBERON:0001307 ! capsule of ovary
[Term]
id: UBERON:0006645
name: adventitia of epididymis
synonym: "epididymis adventitia" EXACT [FMA:19136]
xref: EMAPA:30443
xref: FMA:19136
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0005742 ! adventitia
relationship: part_of UBERON:0001301
intersection_of: UBERON:0005742 ! adventitia
intersection_of: part_of UBERON:0001301 ! epididymis
relationship: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0006646
name: muscle layer of epididymis
xref: EMAPA:30447
xref: EMAPA:30747
xref: FMA:19149
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0001301
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0001301 ! epididymis
relationship: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0006647
name: adventitia of ductus deferens
synonym: "Adventitia of ductus deferens" EXACT [FMA:19238]
synonym: "Adventitia of vas deferens" EXACT [FMA:19238]
synonym: "Deferent ductal adventitia" EXACT [FMA:19238]
synonym: "Tunica adventitia (Ductus deferens)" EXACT [FMA:19238]
synonym: "tunica adventitia ductus deferentis" EXACT [FMA:19238, FMA:TA]
xref: EMAPA:29767
xref: FMA:19238
xref: SCTID:299803005
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0005742 ! adventitia
relationship: part_of UBERON:0001000
intersection_of: UBERON:0005742 ! adventitia
intersection_of: part_of UBERON:0001000 ! vas deferens
relationship: part_of UBERON:0001000 ! vas deferens
[Term]
id: UBERON:0006648
name: adventitia of seminal vesicle
synonym: "Adventitia of seminal gland" EXACT [FMA:19403]
synonym: "Seminal vesicle adventitia" EXACT [FMA:19403]
synonym: "Tunica adventitia (Vesicula seminalis)" EXACT [FMA:19403]
synonym: "tunica adventitia glandulae vesiculosae" EXACT [FMA:19403, FMA:TA]
xref: EMAPA:29775
xref: FMA:19403
xref: SCTID:252406002
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0005742 ! adventitia
relationship: part_of UBERON:0000998
intersection_of: UBERON:0005742 ! adventitia
intersection_of: part_of UBERON:0000998 ! seminal vesicle
relationship: part_of UBERON:0000998 ! seminal vesicle
[Term]
id: UBERON:0006649
name: suspensory ligament of ovary
def: "A fold of peritoneum that extends out from the ovary to the wall of the pelvis. " [Wikipedia:Cooper%27s_ligaments_of_penis_of_ovary]
comment: Some sources consider it a part of the broad ligament of uterus[2] while other sources just consider it a "termination" of the ligament.[3]
synonym: "infundibulopelvic fold" EXACT [FMA:19822]
synonym: "infundibulopelvic ligament" EXACT [FMA:19822]
xref: EMAPA:19085
xref: FMA:19822
xref: SCTID:279917007
is_a: UBERON:0002095 {source="FMA"} ! mesentery
is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament
disjoint_from: UBERON:0008847 ! ovarian ligament
relationship: attaches_to UBERON:0000992 ! female gonad
relationship: develops_from UBERON:0000080 {source="Wikipedia"} ! mesonephros
relationship: develops_from UBERON:0003074 {source="Wikipedia"} ! mesonephric duct
[Term]
id: UBERON:0006650
name: tunica vaginalis testis
def: "The tunica vaginalis is the serous covering of the testis. It is a pouch of serous membrane, derived from the saccus vaginalis of the peritoneum, which in the fetus preceded the descent of the testis from the abdomen into the scrotum. After its descent, that portion of the pouch which extends from the abdominal inguinal ring to near the upper part of the gland becomes obliterated; the lower portion remains as a shut sac, which invests the surface of the testis, and is reflected on to the internal surface of the scrotum; hence it may be described as consisting of a visceral and a parietal lamina." [Wikipedia:Tunica_vaginalis]
synonym: "lamina parietalis" RELATED [Wikipedia:Tunica_vaginalis]
synonym: "lamina visceralis" RELATED [Wikipedia:Tunica_vaginalis]
synonym: "tunica vaginalis testis" RELATED LATIN [Wikipedia:Tunica_vaginalis]
synonym: "tunica vaginalis testis" RELATED [Wikipedia:Tunica_vaginalis]
xref: EMAPA:19179
xref: FMA:19844
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1148.png
is_a: UBERON:0000158 ! membranous layer
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0005344 ! peritoneal vaginal process
[Term]
id: UBERON:0006651
name: appendix testis
def: "The appendix testis is a vestigial remnant of the Mullerian duct, present on the upper pole of the testis and attached to the tunica vaginalis. It is present about 90% of the time." [Wikipedia:Appendix_of_testis]
synonym: "appendices testis" RELATED [Wikipedia:Appendix_of_testis]
synonym: "appendix of the testis" RELATED [Wikipedia:Appendix_of_testis]
synonym: "appendix testis" RELATED LATIN [Wikipedia:Appendix_of_testis]
synonym: "appendix testis" RELATED [Wikipedia:Appendix_of_testis]
synonym: "Testis appendix" EXACT [FMA:19846]
xref: EMAPA:19087
xref: FMA:19846
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray1148.png
xref: SCTID:279601003
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006590 ! vestigial embryonic structure
relationship: develops_from UBERON:0003890 ! Mullerian duct
[Term]
id: UBERON:0006652
name: muscular layer of vagina
synonym: "Muscular coat of vagina" EXACT [FMA:19976]
synonym: "tunica muscularis vaginae" EXACT [FMA:19976, FMA:TA]
xref: EMAPA:30997
xref: FMA:19976
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002385 ! muscle tissue
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000996
intersection_of: UBERON:0002385 ! muscle tissue
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0006653
name: glans clitoris
def: "Erectile tissue at the end of the clitoris, which is continuous with the intermediate part of the vestibulovaginal bulbs[BTO]. The clitoral glans (glans clitoridis) is an external portion of the clitoris[WP]." [BTO:0003117, Wikipedia:Clitoral_glans]
synonym: "clitoris glans" EXACT [FMA:19999]
synonym: "glans clitoridis" RELATED [Wikipedia:Clitoral_glans]
synonym: "glans clitoris" RELATED [Wikipedia:Clitoral_glans]
xref: BTO:0003117
xref: EMAPA:19170
xref: EMAPA:30829
xref: FMA:19999
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Clitoris_inner_anatomy.gif
xref: ncithesaurus:Glans_Clitoris
xref: SCTID:362241002
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0008324 ! erectile tissue
relationship: part_of UBERON:0002411 ! clitoris
relationship: part_of UBERON:0006233 ! female genital tubercle
[Term]
id: UBERON:0006654
name: perineal body
def: "The perineal body (or central tendon of perineum) is a pyramidal fibromuscular mass in the middle line of the perineum at the junction between the urogenital triangle and the anal triangle . It is found in both males and females. In males, it is found between the bulb of penis and the anus; in females, is found between the vagina and anus, and about 1.25 cm in front of the latter. The perineal body is essential for the integrity of the pelvic floor, particularly in females. Its rupture during delivery leads to widening of the gap between the anterior free borders of levator ani muscle of both sides, thus predisposing the woman to prolapse of the uterus, rectum, or even the urinary bladder." [Wikipedia:Perineal_body]
synonym: "central tendinous point" RELATED [Wikipedia:Perineal_body]
synonym: "central tendinous point of the perineum" RELATED [Wikipedia:Perineal_body]
synonym: "central tendon of perineum" EXACT [FMA:20274]
synonym: "central tendon of perineum" RELATED [Wikipedia:Perineal_body]
synonym: "corpus perineale, centrum tendineum perinei" RELATED LATIN [Wikipedia:Perineal_body]
xref: EMAPA:17892
xref: EMAPA:18921
xref: FMA:20274
xref: http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray408.png
xref: SCTID:367754000
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002356 ! perineum
[Term]
id: UBERON:0006655
name: septum of scrotum
synonym: "Scrotal septum" EXACT [FMA:20729]
xref: EMAPA:29745
xref: FMA:20729
xref: SCTID:279591002
is_a: UBERON:0003037 ! septum
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001300 ! scrotum
[Term]
id: UBERON:0006656
name: deep dorsal vein of penis
xref: EMAPA:19219
xref: FMA:21354
xref: SCTID:55433007
is_a: UBERON:0001638 ! vein
is_a: UBERON:0004803 ! penis epithelium
relationship: part_of UBERON:0000989 ! penis
relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein
[Term]
id: UBERON:0006657
name: glenoid fossa
def: "On the lateral angle of the scapula is a shallow pyriform, articular surface, the glenoid cavity, which is directed lateralward and forward and articulates with the head of the humerus; it is broader below than above and its vertical diameter is the longest. The cavity surface is covered with cartilage in the fresh state; and its margins, slightly raised, give attachment to a fibrocartilaginous structure, the glenoid labrum, which deepens the cavity." [Wikipedia:Glenoid_cavity]
comment: AO notes: FMA also has classes for the bony parts around the cavity - these may be more useful than the cavity term itself. AAO def: "Cavity for the articulation of the forelimb formed by the scapula, coracoid, and clavicle." [AAO:Maglia_et_al_2007]
synonym: "cavitas glenoidalis" RELATED LATIN [Wikipedia:Glenoid_cavity]
synonym: "cavitas glenoidalis scapulae" EXACT [FMA:23275, FMA:TA]
synonym: "cavitus glenoidalis" EXACT [FMA:23275]
synonym: "glenoid cavity" EXACT [FMA:23275]
synonym: "glenoid cavity" RELATED [AAO:0000749]
synonym: "glenoid cavity of scapula" EXACT [FMA:23275]
xref: AAO:0000749
xref: EMAPA:25122
xref: FMA:23275
xref: http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray328.png
xref: ncithesaurus:Glenoid_Fossa
xref: SCTID:181914008
property_value: UBPROP:0000001 "Cavity for the articulation of the forelimb formed by the scapula, coracoid, and clavicle.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of scapular area (AAO:0000935)[AAO]" xsd:string
is_a: UBERON:0002553 ! anatomical cavity
relationship: adjacent_to UBERON:0001124 ! pectoral limb scapula
[Term]
id: UBERON:0006658
name: inter-phalangeal joint
synonym: "inter-phalanx joint" EXACT []
synonym: "interphalangeal joint" EXACT [FMA:42765]
xref: FMA:42765
xref: galen:InterphalangealJoint
is_a: UBERON:0003841 ! autopod joint
is_a: UBERON:0011139 ! synovial limb joint
relationship: connects UBERON:0003221 {notes="two phalanges in series"} ! phalanx
relationship: connects UBERON:0003221 {cardinality="2"} ! phalanx
relationship: part_of UBERON:0002544 {source="cjm"} ! digit
[Term]
id: UBERON:0006659
name: cruciate ligament of knee
def: "One of a pair of ligaments arranged like a letter X.[1] They occur in several joints of the body, such as the knee. In a fashion similar to the cords in a toy Jacob's ladder, the crossed ligaments stabilize the joint while allowing a very large range of motion[WP]." [Wikipedia:Cruciate_ligament]
synonym: "cruciate ligament" BROAD [FMA:44611]
synonym: "cruciform ligament" BROAD [Wikipedia:Cruciate_ligament]
xref: FMA:44611
xref: galen:CruciateLigament
is_a: UBERON:0011088 ! ligament of knee joint
disjoint_from: UBERON:0011106 ! cruciate ligament of atlas
relationship: part_of UBERON:0001485 {source="FMA"} ! knee joint
[Term]
id: UBERON:0006660
name: muscle layer
comment: TODO - add subclasses. See also: muscular coat
synonym: "muscular layer" EXACT [OBOL:automatic]
synonym: "muscularis layer" EXACT [FMA:45634]
xref: EMAPA:29034
xref: FMA:45634
xref: ncithesaurus:Muscle_Layer
is_a: UBERON:0002385 ! muscle tissue
[Term]
id: UBERON:0006661
name: epicranial aponeurosis
def: "The galea aponeurotica (epicranial aponeurosis, aponeurosis epicranialis) is a tough layer of dense fibrous tissue which covers the upper part of the cranium; behind, it is attached, in the interval between its union with the Occipitales, to the external occipital protuberance and highest nuchal lines of the occipital bone; in front, it forms a short and narrow prolongation between its union with the Frontales. On either side it gives origin to the Auriculares anterior and superior; in this situation it loses its aponeurotic character, and is continued over the temporal fascia to the zygomatic arch as a layer of laminated areolar tissue. It is closely connected to the integument by the firm, dense, fibro-fatty layer which forms the superficial fascia of the scalp: it is attached to the pericranium by loose cellular tissue, which allows the aponeurosis, carrying with it the integument to move through a considerable distance." [Wikipedia:Galea_aponeurotica]
synonym: "aponeurosis epicranialis" EXACT [FMA:46768, FMA:TA]
synonym: "cranial aponeurosis" RELATED [Wikipedia:Galea_aponeurotica]
synonym: "Epicranial aponeurosis" EXACT [FMA:46768]
synonym: "epicranial aponeurosis" RELATED [Wikipedia:Galea_aponeurotica]
synonym: "Epicranius aponeurosis" EXACT [FMA:46768]
synonym: "galea aponeurosis" RELATED [Wikipedia:Galea_aponeurotica]
synonym: "Galea aponeurotica" EXACT [FMA:46768]
synonym: "galea aponeurotica; aponeurosis epicranialis" RELATED LATIN [Wikipedia:Galea_aponeurotica]
synonym: "galeal aponeurosis" RELATED [Wikipedia:Galea_aponeurotica]
xref: EMAPA:19210
xref: FMA:46768
xref: http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png
xref: SCTID:368677009
is_a: UBERON:0006614 ! aponeurosis
relationship: part_of UBERON:0000403 {source="FMA"} ! scalp
[Term]
id: UBERON:0006662
name: musculo-phrenic vein
xref: EMAPA:19222
xref: FMA:4732
xref: SCTID:1895000
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0001589 ! internal thoracic vein
relationship: tributary_of UBERON:0001589 {source="FMA/obol"} ! internal thoracic vein
[Term]
id: UBERON:0006663
name: hemiazygos vein
def: "The hemiazygos vein (vena azygos minor inferior) is a vein running superiorly in the lower thoracic region, just to the left side of the vertebral column." [Wikipedia:Hemiazygos_vein]
comment: Taxon notes: The major anatomic variation between the pig and other mammalian species is the presence of the large left azygos vein, which enters the coronary sinus (Fig. 1). In other mammals, hemiazygos vein enters the pre- cava.
synonym: "hemi-azygos vein" EXACT [FMA:4944]
synonym: "hemiazygos" RELATED [Wikipedia:Hemiazygos_vein]
synonym: "hemiazygos veins" RELATED [Wikipedia:Hemiazygos_vein]
synonym: "hemiazygous vein" EXACT [FMA:4944]
synonym: "hemiazygous vein" RELATED [Wikipedia:Hemiazygos_vein]
synonym: "inferior hemi-azygos vein" EXACT [FMA:4944]
synonym: "vena hemiazygos" EXACT [FMA:4944, FMA:TA]
synonym: "vena hemiazygos" RELATED LATIN [Wikipedia:Hemiazygos_vein]
xref: EHDAA2:0004534
xref: EMAPA:18251
xref: FMA:4944
xref: http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray480.png
xref: SCTID:244408009
is_a: UBERON:0001638 ! vein
relationship: develops_from UBERON:0008267 {source="ISBN-10:0443065837"} ! left supracardinal vein
relationship: part_of UBERON:0001594 ! azygos vein
relationship: tributary_of UBERON:0001594 {source="FMA/obol"} ! azygos vein
[Term]
id: UBERON:0006664
name: greater palatine artery
def: "The greater palatine artery is a terminal branch of the maxillary artery. It branches off of the maxillary artery in the pterygopalatine fossa and descends through the greater palatine foramen along with the greater palatine nerve and supplies the hard palate. It also anastomosis through the incisive canal with the sphenopalatine artery to supply the nasal cavity." [Wikipedia:Greater_palatine_artery]
comment: todo - check for synonymy between greater and major; branch_of relation is made in FMA at level of descending GPA
synonym: "arteria palatina major" RELATED LATIN [Wikipedia:Greater_palatine_artery]
xref: EMAPA:18754
xref: FMA:49795
xref: MA:0001993
xref: SCTID:312163002
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001637 ! artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: branch_of UBERON:0001616 ! maxillary artery
[Term]
id: UBERON:0006665
name: accessory hemiazygos vein
def: "The accessory hemiazygos vein (vena azygos minor superior) is a vein on the left side of the vertebral column that generally drains the fifth through eighth intercostal spaces on the left side of the body[WP]." [Wikipedia:Accessory_hemiazygos_vein]
comment: todo - add superclass
synonym: "Accessory hemi-azygos vein" EXACT [FMA:5011]
synonym: "Superior hemi-azygos vein" EXACT [FMA:5011]
synonym: "Vena azygos accessoria" EXACT [FMA:5011]
synonym: "vena hemiazygos accessoria" EXACT [FMA:5011, FMA:TA]
synonym: "vena hemiazygos accessoria" RELATED LATIN [Wikipedia:Accessory_hemiazygos_vein]
xref: EMAPA:19217
xref: FMA:5011
xref: http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray480.png
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001594 {source="FMA/obol"} ! azygos vein
[Term]
id: UBERON:0006666
name: great cerebral vein of Galen
synonym: "great cerebral vein of Galen" EXACT [FMA:50993]
synonym: "vein of Galen" EXACT [FMA:50993]
xref: EMAPA:19311
xref: FMA:50993
xref: ncithesaurus:Great_Cerebral_Vein_of_Galen
is_a: UBERON:0001663 ! cerebral vein
[Term]
id: UBERON:0006667
name: pituitary fossa
synonym: "hypophyseal fossa" EXACT [FMA:54721]
synonym: "pituitary fossa" EXACT [FMA:54721]
xref: EMAPA:19195
xref: FMA:54721
xref: SCTID:264194004
is_a: UBERON:0002553 {source="FMA"} ! anatomical cavity
relationship: part_of UBERON:0003689 ! sella turcica
[Term]
id: UBERON:0006668
name: carotid canal
def: "On the interior surface of the temporal bone, behind the rough surface of the apex, is the large circular aperture of the carotid canal, which ascends at first vertically, and then, making a bend, runs horizontally forward and medialward. It transmits into the cranium, the internal carotid artery, and the carotid plexus of nerves. Sympathetics to the head also pass through the carotid canal. They have several motor functions: raise the eyelid (superior tarsal muscle), dilate pupil, innervate sweat glands of face and scalp and constricts blood vessels in head[WP]." [Wikipedia:Carotid_canal]
synonym: "canalis caroticus" RELATED LATIN [Wikipedia:Carotid_canal]
xref: EMAPA:18707
xref: FMA:55805
xref: http://upload.wikimedia.org/wikipedia/commons/4/4c/Gray141.png
is_a: UBERON:0005744 ! cranial conduit
[Term]
id: UBERON:0006669
name: alveolar canal
def: "The infratemporal surface of the maxilla is pierced about its center by the apertures of the alveolar canals, which transmit the posterior superior alveolar vessels and nerves[WP]." [Wikipedia:Alveolar_canals]
synonym: "canales alveolares maxillae" RELATED LATIN [Wikipedia:Alveolar_canals]
xref: EMAPA:25099
xref: FMA:57743
xref: http://upload.wikimedia.org/wikipedia/commons/7/71/Gray157.png
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001710 {source="EMAPA"} ! lower jaw region
[Term]
id: UBERON:0006670
name: central tendon
synonym: "central tendon of diaphragm" EXACT [FMA:58279]
synonym: "centrum tendineum" EXACT [FMA:58279]
synonym: "centrum tendineum diaphragmatis" EXACT [FMA:58279, FMA:TA]
xref: EMAPA:17702
xref: FMA:58279
xref: ncithesaurus:Central_Tendon_of_the_Diaphragm
xref: SCTID:244943002
xref: VHOG:0001399
is_a: UBERON:0000043 ! tendon
relationship: attaches_to UBERON:0002359 ! fibrous pericardium
relationship: develops_from UBERON:0006239 {evidence="definitional"} ! future central tendon
[Term]
id: UBERON:0006671
name: orbital fat pad
synonym: "intraorbital fat pad" EXACT [FMA:59005]
synonym: "orbital fat" EXACT [FMA:59005]
synonym: "retrobulbar fat" EXACT [FMA:59005]
xref: EMAPA:19152
xref: FMA:59005
xref: SCTID:363656009
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0003916 ! fat pad
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0006672
name: incisive canal
xref: EMAPA:19034
xref: FMA:59107
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0003216 ! hard palate
[Term]
id: UBERON:0006673
name: mandibular canal
def: "In humans, the mandibular canal is a canal within the mandible that contains the inferior alveolar nerve, inferior alveolar artery, and inferior alveolar vein. It runs obliquely downward and forward in the ramus, and then horizontally forward in the body, where it is placed under the alveoli and communicates with them by small openings" [Wikipedia:Mandibular_canal]
comment: AO notes: TAO has mandibular sensory canal, which is part of the lateral line system
xref: EMAPA:19161
xref: FMA:59473
xref: http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1003.png
xref: SCTID:368876003
is_a: UBERON:0005744 ! cranial conduit
[Term]
id: UBERON:0006674
name: inguinal ring
xref: EMAPA:19172
xref: EMAPA:29307
xref: FMA:65075
xref: SCTID:278830004
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0006204 ! inguinal ligament
[Term]
id: UBERON:0006675
name: venous valve
synonym: "valve of vein" EXACT [FMA:68095]
xref: FMA:68095
is_a: UBERON:0003978 ! valve
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001638
intersection_of: UBERON:0003978 ! valve
intersection_of: part_of UBERON:0001638 ! vein
relationship: part_of UBERON:0001638 ! vein
[Term]
id: UBERON:0006676
name: muscularis mucosa
def: "The lamina muscularis mucosae (or muscularis mucosa) is the thin layer of smooth muscle found in most parts of the gastrointestinal tract, located outside the lamina propria mucosae and separating it from the submucosa. In the gastrointestinal tract, the term mucosa or \"mucous membrane\" refers to the combination of epithelium, lamina propria, and (where it occurs) muscularis mucosa. The etymology suggests this since the Latin names translate to \"the mucosa's own special layer\" (lamina propria mucosae) and \"muscular layer of the mucosa\" (lamina muscularis mucosae). The muscularis mucosa is composed of several thin layers of smooth muscle fibers oriented in different ways which keeps the mucosal surface and underlying glands in a constant state of gentle agitation to expel contents of glandular crypts and enhance contact between epithelium and the contents of the lumen." [Wikipedia:Muscularis_mucosae]
synonym: "laminar muscularis mucosa" RELATED [Wikipedia:Muscularis_mucosae]
synonym: "muscularis mucosae" EXACT [FMA:68413]
xref: BTO:0004839
xref: FMA:68413
xref: galen:MuscularisMucosae
xref: http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1058.png
xref: ncithesaurus:Muscularis_Mucosa
xref: SCTID:370140002
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0006677
name: surface of epithelium
synonym: "epithelium surface" EXACT [FMA:70997]
xref: FMA:70997
is_a: UBERON:0000015 ! anatomical boundary
relationship: adjacent_to UBERON:0000483
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0000483 ! epithelium
relationship: adjacent_to UBERON:0000483 ! epithelium
[Term]
id: UBERON:0006678
name: foramen secundum
def: "a foramen in the septum primum." [Wikipedia:Foramen_secundum]
synonym: "foramen secundum" RELATED LATIN [Wikipedia:Foramen_secundum]
synonym: "ostium secundum" EXACT [SCTID:308854001]
xref: EHDAA2:0001828
xref: EMAPA:17863
xref: FMA:71105
xref: ncithesaurus:Foramen_Secundum
xref: SCTID:308854001
xref: VHOG:0001471
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0004154 {source="EHDAA2"} ! septum primum
[Term]
id: UBERON:0006679
name: carina of trachea
def: "In anatomy, the carina is a cartilaginous ridge within the trachea that runs anteroposteriorly between the two primary bronchi at the site of the tracheal bifurcation at the lower end of the trachea (usually at the level of the 4th to 5th thoracic vertebrae). The mucous membrane of the carina is the most sensitive area of the trachea and larynx for triggering a cough reflex. Widening and distortion of the carina is a serious sign because it usually indicates carcinoma of the lymph nodes around the region where the trachea divides. Tracheobronchial injury, an injury to the airways, occurs within 2.5 cm of the carina 40b80% of the time." [Wikipedia:Carina_of_trachea]
synonym: "bifurcation of the trachea" RELATED [Wikipedia:Carina_of_trachea]
synonym: "carina" BROAD [FMA:7465]
synonym: "carina %28anatomy%29" RELATED [Wikipedia:Carina_of_trachea]
synonym: "carina of trachea" RELATED [Wikipedia:Carina_of_trachea]
synonym: "carina tracheae" EXACT [EMAPA:18407]
synonym: "carina tracheae" RELATED LATIN [Wikipedia:Carina_of_trachea]
synonym: "tracheal carina" EXACT [FMA:7465]
xref: EMAPA:18407
xref: FMA:7465
xref: http://upload.wikimedia.org/wikipedia/commons/f/f2/Diagrama_de_los_pulmones-c.svg
xref: ncithesaurus:Carina
xref: SCTID:181214003
is_a: UBERON:0002418 ! cartilage tissue
disjoint_from: UBERON:0011604 ! carina of sternum
[Term]
id: UBERON:0006680
name: trachealis
def: "A smooth muscle tissue that bridges the gap between free ends of C-shaped cartilages at the posterior border of the trachea, adjacent to the esophagus. A primary function of the trachealis is to constrict the windpipe, allowing for higher velocity of air in the windpipe during coughing[WP, modified]." [Wikipedia:Trachealis_muscle]
synonym: "tracheal muscle" EXACT [FMA:7466]
synonym: "trachealis muscle" EXACT [FMA:7466]
xref: EMAPA:19193
xref: FMA:7466
xref: SCTID:197333002
is_a: UBERON:0003387 ! smooth muscle of trachea
relationship: part_of UBERON:0003387 ! smooth muscle of trachea
[Term]
id: UBERON:0006681
name: interthalamic adhesion
synonym: "Interthalamic connection" EXACT [FMA:74869]
synonym: "Middle commissure" EXACT [FMA:74869]
xref: EMAPA:18546
xref: FMA:74869
is_a: UBERON:0001020 ! commissure
[Term]
id: UBERON:0006682
name: hypoglossal canal
xref: EMAPA:19012
xref: FMA:75370
xref: SCTID:139380001
is_a: UBERON:0004111 ! anatomical conduit
[Term]
id: UBERON:0006683
name: posterior fontanelle
def: "In humans, the posterior fontanelle (or occipital fontanelle) is a gap between bones in the skull, triangular in form and situated at the junction of the sagittal suture and lambdoidal suture. It generally closes in 6–8 weeks from birth. A delay in closure is associated with congential hypothyroidism." [Wikipedia:Posterior_fontanelle]
synonym: "fonticulus posterior" EXACT LATIN []
synonym: "occipital posterior" EXACT LATIN []
synonym: "posterior fontanelle of skull" EXACT LATIN []
xref: EMAPA:19200
xref: FMA:75440
xref: http://upload.wikimedia.org/wikipedia/commons/b/b3/Gray197.png
xref: SCTID:244681005
is_a: UBERON:0002221 ! fontanelle
relationship: connects UBERON:0002491 ! lambdoid suture
relationship: connects UBERON:0002492 ! sagittal suture
[Term]
id: UBERON:0006684
name: sphenoidal fontanelle
def: "." [Wikipedia:Pterion]
comment: See also FMA:264720
synonym: "sphenoidal fontanelle" RELATED [Wikipedia:Pterion]
xref: EMAPA:19229
xref: FMA:75441
xref: http://upload.wikimedia.org/wikipedia/commons/6/6a/Pterion.PNG
xref: SCTID:136955008
is_a: UBERON:0002221 ! fontanelle
[Term]
id: UBERON:0006685
name: pharyngeal tubercle
xref: EMAPA:19250
xref: FMA:75746
is_a: UBERON:0005813 ! tubercle
[Term]
id: UBERON:0006686
name: spinal vein
synonym: "Spinal vein" EXACT [FMA:76735]
synonym: "vena spinalis" EXACT [FMA:76735, FMA:TA]
xref: EMAPA:18255
xref: FMA:76735
xref: SCTID:181376008
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0001130
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0006687
name: median sacral vein
xref: EMAPA:26064
xref: FMA:77168
is_a: UBERON:0001638 ! vein
relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein
[Term]
id: UBERON:0006688
name: sublingual caruncle
def: "The sublingual caruncle is a site on either side of the frenulum linguae on the sublingual surface of the tongue. There it denotes the site at which the submandibular gland empties into the oral cavity." [Wikipedia:Sublingual_caruncle]
synonym: "caruncula sublingualis" RELATED LATIN [Wikipedia:Sublingual_caruncle]
xref: EMAPA:18961
xref: FMA:77273
xref: http://upload.wikimedia.org/wikipedia/commons/1/13/Gray1202.png
xref: SCTID:85139009
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0006689
name: frenulum of tongue
def: "The frenulum of tongue (or lingual frenulum) is the frenulum of the tongue, a small fold of mucous membrane extending from the floor of the mouth to the midline of the underside of the tongue." [Wikipedia:Frenulum_of_tongue]
synonym: "frenulum" BROAD []
synonym: "frenulum lingu%c3%a6" RELATED [Wikipedia:Frenulum_of_tongue]
synonym: "frenulum linguae" RELATED [Wikipedia:Frenulum_of_tongue]
synonym: "frenulum linguae" RELATED LATIN [Wikipedia:Frenulum_of_tongue]
synonym: "frenulum of the tongue" RELATED [Wikipedia:Frenulum_of_tongue]
synonym: "lingual frenulum" RELATED [Wikipedia:Frenulum_of_tongue]
synonym: "lingual frenum" RELATED [Wikipedia:Frenulum_of_tongue]
synonym: "tongue frenulum" EXACT [FMA:54659]
xref: EMAPA:18656
xref: EMAPA:18874
xref: FMA:54659
xref: http://upload.wikimedia.org/wikipedia/commons/1/13/Gray1202.png
xref: ncithesaurus:Frenulum
xref: SCTID:264113009
is_a: UBERON:0005020 ! mucosa of tongue
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0006690
name: deep dorsal vein of clitoris
xref: EMAPA:19218
xref: FMA:77504
xref: SCTID:25834009
is_a: UBERON:0003480 ! vein of clitoris
relationship: part_of UBERON:0002411 ! clitoris
relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein
[Term]
id: UBERON:0006691
name: tentorium cerebelli
def: "The tentorium cerebelli or cerebellar tentorium is an extension of the dura mater that separates the cerebellum from the inferior portion of the occipital lobes." [Wikipedia:Tentorium_cerebelli]
synonym: "Cerebellar tentorium" EXACT [FMA:83966]
synonym: "infratentorial neoplasms" RELATED [Wikipedia:Tentorium_cerebelli]
synonym: "supratentorial neoplasms" RELATED [Wikipedia:Tentorium_cerebelli]
xref: EMAPA:18210
xref: FMA:83966
xref: http://upload.wikimedia.org/wikipedia/commons/b/b7/Illu_tentorium.jpg
xref: ncithesaurus:Tentorium_Cerebelli
xref: SCTID:244428008
xref: VHOG:0001298
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002363 ! dura mater
[Term]
id: UBERON:0006692
name: vertebral canal
def: "The spinal canal (or vertebral canal or spinal cavity) is the space in vertebrae through which the spinal cord passes. It is a process of the dorsal human body cavity. This canal is enclosed within the vertebral foramen of the vertebrae. In the intervertebral spaces, the canal is protected by the ligamentum flavum posteriorly and the posterior longitudinal ligament anteriorly. The outermost layer of the meninges, the dura mater, is closely associated with the arachnoid which in turn is loosely connected to the innermost layer of the meninges, the pia mater. The meninges divide the spinal canal into the epidural space and the subarachnoid space. The pia mater is closely attached to the spinal cord. A subdural space is generally only present due to trauma and/or pathological situations. The subarachnoid space is filled with cerebrospinal fluid and contains the vessels that supply the spinal cord, namely the anterior spinal artery and the paired posterior spinal arteries, accompanied by a corresponding spinal veins. The spinal arteries form anastomoses known as the vasocorona of the spinal cord. The epidural space contains loose fatty tissue, and a network of large, thin-walled blood vessels called the anterior vertebral venous plexus and the posterior vertebral venous plexus The spinal canal was first described by Jean Fernel." [Wikipedia:Spinal_canal]
comment: todo - check neural vs vertebral canal; embryonic vs adult?
synonym: "c. vertebralis" RELATED LATIN [Wikipedia:Spinal_canal]
synonym: "foramen vertebrale" RELATED [AAO:0000693]
synonym: "neural canal" RELATED [AAO:0000693]
synonym: "spinal canal" RELATED [AAO:0000693]
synonym: "spinal cavity" RELATED [Wikipedia:Spinal_canal]
synonym: "vertebral canal" RELATED [Wikipedia:Spinal_canal]
xref: AAO:0000693
xref: EMAPA:25440
xref: EMAPA:25448
xref: EMAPA:25456
xref: EMAPA:25464
xref: EMAPA:25472
xref: EMAPA:25480
xref: EMAPA:25488
xref: EMAPA:25496
xref: EMAPA:25504
xref: EMAPA:25512
xref: EMAPA:25520
xref: EMAPA:25528
xref: EMAPA:25536
xref: EMAPA:25544
xref: EMAPA:25552
xref: EMAPA:25560
xref: EMAPA:25568
xref: EMAPA:25576
xref: EMAPA:25584
xref: EMAPA:25592
xref: EMAPA:25600
xref: EMAPA:25608
xref: EMAPA:25616
xref: EMAPA:25624
xref: EMAPA:25632
xref: EMAPA:25640
xref: EMAPA:25648
xref: EMAPA:25656
xref: EMAPA:25664
xref: EMAPA:25672
xref: EMAPA:25680
xref: EMAPA:25688
xref: EMAPA:25731
xref: EMAPA:25738
xref: EMAPA:25745
xref: EMAPA:25752
xref: EMAPA:25759
xref: EMAPA:26521
xref: EMAPA:26537
xref: FMA:9680
xref: GAID:242
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray82.png
xref: ncithesaurus:Neural_Canal
xref: ncithesaurus:Vertebral_Canal
xref: SCTID:361746009
property_value: UBPROP:0000001 "Canal formed by the vertebral centra ventrally, the pedicels laterally, and the neural arches dorsally that encloses and protects the spinal cord.[AAO]" xsd:string
is_a: UBERON:0004111 ! anatomical conduit
relationship: part_of UBERON:0001130 ! vertebral column
relationship: surrounds UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0006693
name: protein-based cuticle
def: "An example of this is found in Caenorhabditis elegans" [GO:0007592]
is_a: UBERON:0001002 ! cuticle
[Term]
id: UBERON:0006694
name: cerebellum vasculature
is_a: UBERON:0005284 ! brain vasculature
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0006695
name: mammillary axonal complex
def: "The mammillary axonal complex is formed by the axons from the lateral, medial mammillary and the dorsal premammillary nuclei which share a branching pattern. Every neuron gives off one axonal stem that bifurcates into 2 branches. One of the branches is directed dorsally to the thalamus and another caudally to the midbrain[GO]." [GO:0061373]
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002206 ! mammillary body
[Term]
id: UBERON:0006696
name: mammillothalamic axonal tract
alt_id: UBERON:0009642
def: "The mammillothalamic tract is the collection of axons that connects the two major subdivisions of the diencephalon (hypothalamus and thalamus) and closes the diencephalic circuit[GO]." [GO:0061374, Wikipedia:Mammillothalamic_fasciculus]
comment: The mammillothalamic fasciculus arises from cells in both the medial and lateral nuclei of the mammillary body and by fibers that are directly continued from the fornix. The Mammillothalamic fasciculus then connects the mammillary body to the dorsal tegmental nuclei, the ventral tegmental nuclei, and the anterior thalamic nucleus [WP]
synonym: "bundle of vicq d%27azyr" RELATED [Wikipedia:Mammillothalamic_fasciculus]
synonym: "bundle of vicq d%e2%80%99azyr" RELATED [Wikipedia:Mammillothalamic_fasciculus]
synonym: "fasciculus mammillothalamicus" EXACT [FMA:TA]
synonym: "fasciculus mammillothalamicus" RELATED LATIN [Wikipedia:Mammillothalamic_fasciculus]
synonym: "mamillo-thalamic tract" RELATED [Wikipedia:Mammillothalamic_fasciculus]
synonym: "mammillo-thalamic fasciculus" RELATED [Wikipedia:Mammillothalamic_fasciculus]
synonym: "mammillothalamic fasciculus" EXACT [FMA:83849]
synonym: "mammillothalamic tract" EXACT [FMA:83849]
synonym: "mammillothalamic tract" RELATED [Wikipedia:Mammillothalamic_fasciculus]
synonym: "thalamomammillary fasciculus" RELATED [Wikipedia:Mammillothalamic_fasciculus]
synonym: "vicq d'azyr's bundle" EXACT [FMA:83849]
xref: FMA:83849
xref: NIF_GrossAnatomy:nlx_anat_1010016
is_a: UBERON:0011591 ! tract of diencephalon
relationship: continuous_with UBERON:0001897 ! thalamus
relationship: continuous_with UBERON:0001898 ! hypothalamus
relationship: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0006695 ! mammillary axonal complex
[Term]
id: UBERON:0006697
name: mammillotectal axonal tract
def: "The mammillotectal tract is the collection of axons that connects the ventral diencephalon to the superior colliculus." [GO:0061375]
is_a: UBERON:0011591 ! tract of diencephalon
relationship: continuous_with UBERON:0001894 ! diencephalon
relationship: continuous_with UBERON:0001945 ! superior colliculus
relationship: part_of UBERON:0006695 ! mammillary axonal complex
[Term]
id: UBERON:0006698
name: mammillotegmental axonal tract
alt_id: UBERON:0002725
def: " The mammillotegmental tract is the collection of axons that connects the ventral diencephalon to the tegmentum and pons" [GO:0061376]
synonym: "Gudden tract" EXACT [FMA:62058]
synonym: "mammillotegmental fasciculus" EXACT [FMA:62058]
synonym: "mammillotegmental tract" EXACT [FMA:62058]
synonym: "mammillotegmental tract of hypothalamus" EXACT [NIF_GrossAnatomy:birnlex_1497]
synonym: "von Gudden's tract" EXACT [FMA:62058]
xref: FMA:62058
xref: NIF_GrossAnatomy:birnlex_1497
xref: SCTID:369140005
is_a: UBERON:0011591 ! tract of diencephalon
relationship: continuous_with UBERON:0000988 ! pons
relationship: continuous_with UBERON:0001943 ! midbrain tegmentum
relationship: part_of UBERON:0002770 {source="FMA"} ! posterior hypothalamic region
relationship: part_of UBERON:0006695 ! mammillary axonal complex
[Term]
id: UBERON:0006699
name: foramen caecum of tongue
def: "The dorsum of the tongue is convex and marked by a median sulcus, which divides it into symmetrical halves; this sulcus ends behind, about 2.5 cm from the root of the organ, in a depression, the foramen cecum, from which a shallow groove, the sulcus terminalis, runs lateral and anterior on either side to the margin of the tongue. The foramen cecum is the point of attachment of the thyroglossal duct and is formed during the embryological descent of the thyroid gland." [Wikipedia:Foramen_cecum_%28tongue%29]
comment: consider merging with FC of thyroid
synonym: "f. caecum linguae" RELATED LATIN [Wikipedia:Foramen_cecum_%28tongue%29]
synonym: "foramen cecum of tongue" EXACT [FMA:54828]
synonym: "foramen of morgagni" EXACT [FMA:54828]
synonym: "morand's foramen" EXACT [FMA:54828]
xref: FMA:54828
xref: http://upload.wikimedia.org/wikipedia/commons/a/a3/Foramen_caecum.png
xref: SCTID:368738001
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
disjoint_from: UBERON:0006713 ! foramen cecum of frontal bone
relationship: develops_from UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0006713
name: foramen cecum of frontal bone
def: "The frontal crest of the frontal bone ends below in a small notch which is converted into a foramen, the foramen cecum, by articulation with the ethmoid. This foramen varies in size in different subjects, and is frequently impervious; when open, it transmits a vein from the nose to the superior sagittal sinus. This has clinical importance in that infections of the nose and nearby areas can be transmitted to the meninges and brain from what is known as the danger triangle of the face." [Wikipedia:Foramen_cecum_%28frontal_bone%29]
comment: todo - check if this is what the FMA ID really denotes
synonym: "f. caecum ossis frontalis" RELATED LATIN [Wikipedia:Foramen_cecum_%28frontal_bone%29]
xref: FMA:57443
xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Gray135.png
is_a: UBERON:0005744 ! cranial conduit
[Term]
id: UBERON:0006714
name: tibiofibula
def: "Paired, endochondral bones formed by the fusion of the tibia and fibula. They form the shanks, extending from the knees to the ankles." [AAO:Maglia_et_al_2007]
synonym: "os cruris" RELATED [AAO:0000902]
synonym: "tibia-fibula" EXACT [XAO:0003213]
synonym: "tibiofibula" EXACT []
xref: AAO:0000902
xref: XAO:0003213
property_value: "has_fused_element" UBERON:0000979
property_value: "has_fused_element" UBERON:0001446
is_a: UBERON:0004251 ! lower leg bone
relationship: part_of UBERON:0010720 {source="AAO"} ! hindlimb zeugopod skeleton
[Term]
id: UBERON:0006715
name: radio-ulna
def: "Paired, long bones of endochondral origin formed by the fusion of the radius and ulna." [AAO:Maglia_et_al_2007]
synonym: "radioulna" EXACT [XAO:0003209]
synonym: "radius-ulna" EXACT [XAO:0003209]
xref: AAO:0000901
xref: XAO:0003209
property_value: "has_fused_element" UBERON:0001423
property_value: "has_fused_element" UBERON:0001424
is_a: UBERON:0003466 ! lower arm bone
relationship: develops_from UBERON:0010848 ! radius-ulna cartilage condensation
relationship: part_of UBERON:0010703 {source="VSAO"} ! forelimb zeugopod skeleton
[Term]
id: UBERON:0006716
name: mesopodium region
def: "The third segment of the limb, including either the wrist segment (carpus) or the ankle segment (tarsus)" [MA:th, UBERON:cjm, Wikipedia:Carpus_and_tarsus_of_land_vertebrates]
comment: Naming conventions for pod terms under discussion within phenoscape group
synonym: "carpus/tarsus" EXACT []
synonym: "mesopod" RELATED []
synonym: "mesopodial limb segment" EXACT [MA:th]
synonym: "mesopodial segment" EXACT []
is_a: UBERON:0002529 ! limb segment
relationship: distally_connected_to UBERON:0009877
relationship: proximally_connected_to UBERON:0002471
intersection_of: UBERON:0002529 ! limb segment
intersection_of: distally_connected_to UBERON:0009877 ! metapodium region
intersection_of: proximally_connected_to UBERON:0002471 ! zeugopod
relationship: distally_connected_to UBERON:0009877 ! metapodium region
relationship: part_of UBERON:0002470 {source="MA:th"} ! autopod region
relationship: proximally_connected_to UBERON:0002471 ! zeugopod
[Term]
id: UBERON:0006717
name: skeleton of autopod
def: "The collection of all skeletal elements in an autopodium region." [UBERON:cjm]
comment: Naming conventions for pod terms under discussion within phenoscape group
synonym: "autopod skeleton" EXACT [UBERON:cjm]
synonym: "autopodial skeleton" EXACT [VSAO:0005019]
synonym: "autopodium" RELATED [VSAO:0005019, VSAO:NI]
xref: VSAO:0005019
property_value: UBPROP:0000001 "Distal section of the limb skeleton, consisting of the anterior autopodium or posterior autopodium.[VSAO]" xsd:string
is_a: UBERON:0010712 ! limb skeleton subdivision
relationship: subdivision_of UBERON:0002470
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002470 ! autopod region
relationship: part_of UBERON:0002470 ! autopod region
relationship: part_of UBERON:0004381 ! skeleton of limb
relationship: subdivision_of UBERON:0002470 ! autopod region
[Term]
id: UBERON:0006718
name: medial pterygoid muscle
def: "The medial pterygoid (or internal pterygoid muscle), is a thick, quadrilateral muscle of mastication. The mandibular branch of the fifth cranial nerve, the trigeminal nerve, innervates the medial pterygoid muscle." [Wikipedia:Medial_pterygoid_muscle]
synonym: "internal pterygoid" RELATED [Wikipedia:Medial_pterygoid_muscle]
synonym: "internal pterygoid muscle" RELATED []
synonym: "medial pterygoid" RELATED [Wikipedia:Medial_pterygoid_muscle]
synonym: "musculus pterygoideus medialis, musculus pterygoideus internus" RELATED LATIN [Wikipedia:Medial_pterygoid_muscle]
synonym: "pterygoid medialis" EXACT [MA:0002361]
synonym: "pterygoidei internus" RELATED [Wikipedia:Medial_pterygoid_muscle]
synonym: "pterygoideus internus" RELATED [Wikipedia:Medial_pterygoid_muscle]
synonym: "pterygoideus medial" EXACT [Wikipedia:Medial_pterygoid_muscle]
synonym: "pterygoideus medialis" EXACT [Wikipedia:Medial_pterygoid_muscle]
xref: EMAPA:25141
xref: FMA:49011
xref: http://upload.wikimedia.org/wikipedia/commons/e/ec/Musculuspterygoideusmedialis.png
xref: MA:0002361
xref: ncithesaurus:Internal_Pterygoid_Muscle
xref: SCTID:244771003
property_value: UBPROP:0000001 "The medial pterygoid is a pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to the medial pterygoid and attaches to the cranial base and the medial side of the mandibular angle.[FEED]" xsd:string
is_a: UBERON:0006720 ! pterygoid muscle
relationship: has_muscle_insertion UBERON:0001684 {source="dbpedia", notes="medial angle of the mandible"} ! mandible
relationship: has_muscle_nerve UBERON:0000375 {notes="mandibular nerve via nerve to medial pterygoid", source="dbpedia"} ! mandibular nerve
[Term]
id: UBERON:0006719
name: lateral pterygoid muscle
def: "The lateral pterygoid (or external pterygoid) is a muscle of mastication with two heads." [Wikipedia:Lateral_pterygoid_muscle]
synonym: "external pterygoid muscle" RELATED [Wikipedia:Lateral_pterygoid_muscle]
synonym: "lateral pteregoid" RELATED [Wikipedia:Lateral_pterygoid_muscle]
synonym: "lateral pteregoid muscle" RELATED [Wikipedia:Lateral_pterygoid_muscle]
synonym: "lateral pterygoid" EXACT [FMA:49015]
synonym: "lateral pterygoid" RELATED [Wikipedia:Lateral_pterygoid_muscle]
synonym: "m. pterygoideus externus" RELATED LATIN [Wikipedia:Lateral_pterygoid_muscle]
synonym: "m. pterygoideus lateralis" RELATED LATIN [Wikipedia:Lateral_pterygoid_muscle]
synonym: "musculus pterygoides lateralis" EXACT [FMA:49015]
synonym: "musculus pterygoideus externus" RELATED LATIN [Wikipedia:Lateral_pterygoid_muscle]
synonym: "musculus pterygoideus lateralis" RELATED LATIN [Wikipedia:Lateral_pterygoid_muscle]
synonym: "pterygoid lateralis" EXACT [MA:0002360]
synonym: "pterygoideus externus" RELATED [Wikipedia:Lateral_pterygoid_muscle]
synonym: "pterygoideus externus muscle" RELATED [Wikipedia:Lateral_pterygoid_muscle]
synonym: "pterygoideus lateral" EXACT [Wikipedia:Lateral_pterygoid_muscle]
synonym: "pterygoideus lateral muscle" EXACT [Wikipedia:Lateral_pterygoid_muscle]
xref: EMAPA:25140
xref: FMA:49015
xref: http://upload.wikimedia.org/wikipedia/commons/b/bb/Musculuspterygoideuslateralis.png
xref: MA:0002360
xref: ncithesaurus:External_Pterygoid_Muscle
xref: SCTID:244772005
property_value: UBPROP:0000001 "Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by the lateral pterygoid nerve branches, and attaches to the condylar process of the mandible and TMJ capsule, and the cranial base.[FEED]" xsd:string
is_a: UBERON:0006720 ! pterygoid muscle
relationship: has_muscle_insertion UBERON:0004657 {source="dbpedia"} ! mandible condylar process
relationship: has_muscle_nerve UBERON:0000375 {notes="lateral pterygoid nerve from the mandibular nerve", source="dbpedia"} ! mandibular nerve
relationship: has_muscle_origin UBERON:0004649 {source="dbpedia", notes="Great wing of sphenoid and pterygoid plate"} ! sphenoid bone pterygoid process
[Term]
id: UBERON:0006720
name: pterygoid muscle
subset: grouping_class
xref: EMAPA:25139
xref: GAID:147
xref: MESH:A.02.633.567.600.700
xref: SCTID:244770002
is_a: UBERON:0003681 ! masticatory muscle
relationship: has_muscle_insertion UBERON:0001684 {notes="generalized", source="dbpedia"} ! mandible
relationship: has_muscle_nerve UBERON:0000375 {notes="generalized", source="dbpedia"} ! mandibular nerve
[Term]
id: UBERON:0006721
name: alisphenoid bone
def: "The greater wing of the sphenoid bone, or alisphenoid, is a bony process of the sphenoid bone; there is one on each side, extending from the side of the body of the sphenoid and curving upward, laterally, and backwards[WP]." [Wikipedia:Greater_wing_of_sphenoid_bone]
comment: Taxon notes: The alisphenoid in mammals is part cartilage bone, part membrane bone[PMC1231738] In many mammals, e.g. the dog, the greater wing of the sphenoid bone stays through life a separate bone called the alisphenoid[WP]. Development notes: The mammalian alisphenoid forms the greater wing of the sphenoid bone, which contributes a small part of the skull vault just caudal to the orbit, and also underlies the basal part of the frontal and parietal bones in the fetus (Iseki et al. 1997)[PMID:11523816].
synonym: "ala major (os sphenoidale)" EXACT [FMA:52868]
synonym: "ala major ossis sphenoidalis" RELATED LATIN [Wikipedia:Greater_wing_of_sphenoid_bone]
synonym: "alisphenoid bone" EXACT SENSU [MA:0002772]
synonym: "greater wing of sphenoid bone" RELATED [MA:0002772]
synonym: "greater wing of sphenoidal bone" EXACT [FMA:52868]
xref: FMA:52868
xref: http://upload.wikimedia.org/wikipedia/commons/3/35/Gray145.png
xref: MA:0002772
xref: SCTID:361298007
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0011164 {source="MA"} ! neurocranium bone
relationship: develops_from UBERON:0009637 {source="ISBN10:1588903958"} ! alisphenoid ossification center
relationship: develops_from UBERON:0010733 ! alisphenoid cartilage condensation
relationship: part_of UBERON:0001677 {source="MA"} ! sphenoid bone
relationship: part_of UBERON:0008895 {source="PMID:11523816"} ! splanchnocranium
[Term]
id: UBERON:0006722
name: manubrium of malleus
def: "The handle of the malleus; the portion that extends downward, inward, and backward from the neck of the malleus; it is embedded throughout its length in the tympanic membrane." [http://www.mondofacto.com/facts/dictionary?manubrium+of+malleus]
synonym: "handle of malleus" RELATED [MA:0002985]
synonym: "malleal manubrium" RELATED [MA:0002985]
synonym: "malleus handle" EXACT [FMA:52760]
synonym: "malleus handle" RELATED [MA:0002985]
synonym: "malleus manubrium" RELATED [MA:0002985]
synonym: "manubrium mallei" RELATED [MA:0002985]
synonym: "manubrium of malleus" EXACT [FMA:52760]
synonym: "manubrium of malleus" RELATED [MA:0002985]
xref: FMA:52760
xref: MA:0002985
xref: SCTID:264091009
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001689 ! malleus
relationship: surrounded_by UBERON:0002364 {source="cjm"} ! tympanic membrane
[Term]
id: UBERON:0006723
name: cochlear modiolus
def: "The modiolus is a conical shaped central axis in the cochlea. The Modiolus consists of spongy bone and the cochlea turns approximately 2.75 times around the modiolus The spiral ganglion is situated inside the bony modiolus." [Wikipedia:Modiolus_%28cochlea%29]
subset: organ_slim
synonym: "cochlea modiolus" EXACT [FMA:61278]
synonym: "columella cochleae" RELATED [BTO:0001693]
synonym: "modiolus" BROAD [MA:0001182]
synonym: "modiolus of cochlea" EXACT [FMA:61278]
xref: BTO:0001693
xref: FMA:61278
xref: http://upload.wikimedia.org/wikipedia/commons/1/16/Gray921.png
xref: MA:0001182
xref: ncithesaurus:Modiolus
xref: SCTID:361314007
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0006585 ! vestibular organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
disjoint_from: UBERON:0011386 ! facial modiolus
relationship: part_of UBERON:0007223 {source="MA"} ! osseus cochlea
[Term]
id: UBERON:0006724
name: osseus spiral lamina
def: "The osseous spiral lamina is a bony shelf or ledge which projects from the modiolus into the interior of the canal, and, like the canal, takes two-and-three-quarter turns around the modiolus. It reaches about half-way toward the outer wall of the tube, and partially divides its cavity into two passages or scalae, of which the upper is named the scala vestibuli, while the lower is termed the scala tympani." [Wikipedia:Osseous_spiral_lamina]
synonym: "lamina modioli cochleae" EXACT [FMA:77710, FMA:TA]
synonym: "lamina of modiolus cochleae" EXACT [FMA:77710]
synonym: "lamina of modiolus of cochlea" EXACT [FMA:77710]
synonym: "osseous spiral lamina" EXACT []
synonym: "osseous spiral lamina of cochlea" EXACT [FMA:77710]
xref: FMA:77710
xref: MA:0001184
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0006585 ! vestibular organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0006723 {source="FMA"} ! cochlear modiolus
relationship: part_of UBERON:0007223 {source="MA"} ! osseus cochlea
[Term]
id: UBERON:0006725
name: spiral ligament
def: "A spiral thickening of the fibrous lining of the cochlear wall. Spiral ligament secures the membranous cochlear duct to the bony spiral canal of the cochlea. Its spiral ligament fibrocytes function in conjunction with the stria vascularis to mediate cochlear ion homeostasis." [https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=3557974&group_id=76834, MESH:MESH, Wikipedia:Spiral_ligament]
comment: Note that this is not classified as a ligament in FMA
synonym: "ligamentum spirale ductus cochlearis" EXACT LATIN [Wikipedia:Spiral_ligament]
synonym: "spiral cochlear ligament" EXACT LATIN []
synonym: "spiral ligament of cochlear duct" EXACT [FMA:77834]
xref: A09.246.631.246.965
xref: FMA:77834
xref: MA:0001192
xref: SCTID:279840005
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: attaches_to UBERON:0006106 {source="MESH-def"} ! cochlear canal
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0006726
name: outer canthus
comment: see also FMA:59321
synonym: "lateral angle of eye" RELATED [FMA:59321]
synonym: "lateral canthus" RELATED [MA:0001264]
synonym: "lateral canthus of eye" EXACT [FMA:59321]
synonym: "lateral palpebral commissure" EXACT [FMA:59315]
synonym: "temporal canthus" RELATED []
xref: EHDAA2:0000910
xref: EHDAA:9039
xref: FMA:59315
xref: MA:0001264
xref: ncithesaurus:Outer_Canthus
xref: SCTID:362525004
xref: VHOG:0001571
is_a: UBERON:0006742 ! canthus
[Term]
id: UBERON:0006727
name: liver left lateral lobe
synonym: "lateral segment of left lobe of liver" EXACT [FMA:14501]
synonym: "lateral segment of liver" EXACT [FMA:14501]
synonym: "segmentum laterale (lobus hepatis sinister)" EXACT [FMA:14501]
xref: FMA:14501
xref: MA:0001641
xref: SCTID:271288003
is_a: UBERON:0001115 ! left lobe of liver
[Term]
id: UBERON:0006728
name: liver left medial lobe
synonym: "medial segment of left lobe of liver" EXACT [FMA:14500]
synonym: "medial segment of liver" EXACT [FMA:14500]
synonym: "segmentum mediale (lobus hepatis sinister)" EXACT [FMA:14500]
xref: FMA:14500
xref: MA:0001642
xref: SCTID:271085007
is_a: UBERON:0001115 ! left lobe of liver
[Term]
id: UBERON:0006729
name: liver perisinusoidal space
synonym: "Disse's space" EXACT [FMA:63162]
synonym: "hepatic perisinusoidal space" EXACT [FMA:63162]
synonym: "perisinusoidal space of Disse" EXACT [FMA:63162]
synonym: "space of Disse" EXACT [FMA:63162]
xref: FMA:63162
xref: MA:0002497
xref: SCTID:17779003
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0004647 ! liver lobule
[Term]
id: UBERON:0006742
name: canthus
def: "Canthus (pl. canthi, palpebral commissures) is either corner of the eye where the upper and lower eyelids meet. The bicanthal plane is the transversal plane linking both canthi and defines the upper boundary of the midface." [Wikipedia:Canthus]
synonym: "bicanthal" RELATED [Wikipedia:Canthus]
synonym: "bicanthal plane" RELATED [Wikipedia:Canthus]
synonym: "canthi" RELATED [Wikipedia:Canthus]
synonym: "canthoplasty" RELATED [Wikipedia:Canthus]
synonym: "canthorum" RELATED [Wikipedia:Canthus]
synonym: "canthus %28anatomy%29" RELATED [Wikipedia:Canthus]
synonym: "palpebral commissure" EXACT [FMA:59222]
xref: FMA:59222
xref: http://upload.wikimedia.org/wikipedia/commons/a/a9/Gray892.png
xref: SCTID:181145006
is_a: UBERON:0000061 ! anatomical structure
relationship: adjacent_to UBERON:0001712 ! upper eyelid
relationship: adjacent_to UBERON:0001713 ! lower eyelid
[Term]
id: UBERON:0006743
name: paleodentate of dentate nucleus
synonym: "paleodentate of dentate nucleus" EXACT [NIF_GrossAnatomy:birnlex_1490]
synonym: "paleodentate portion of dentate nucleus" EXACT [FMA:72540]
synonym: "PDT" EXACT [NIF_GrossAnatomy:birnlex_1490]
xref: FMA:72540
xref: NIF_GrossAnatomy:birnlex_1490
is_a: UBERON:0002946 ! regional part of cerebellum
is_a: UBERON:0003528 ! brain grey matter
relationship: part_of UBERON:0002132 ! dentate nucleus
[Term]
id: UBERON:0006749
name: superior parathyroid gland
comment: Taxon notes: Mammals typically have four parathyroids, while other groups typically have six
subset: organ_slim
xref: EHDAA2:0001954
xref: EHDAA:3870
xref: EHDAA:9135
xref: FMA:55558
xref: ncithesaurus:Superior_Parathyroid_Gland
xref: SCTID:245540001
is_a: UBERON:0001132 ! parathyroid gland
relationship: has_developmental_contribution_from UBERON:0010027 {gci_filler="NCBITaxon:9606", gci_relation="part_of", source="EHDAA2-modified"} ! dorsal part of pharyngeal pouch 4
[Term]
id: UBERON:0006755
name: inferior parathyroid gland
comment: Taxon notes: Mammals typically have four parathyroids, while other groups typically have six
subset: organ_slim
xref: EHDAA2:0000821
xref: EHDAA:3864
xref: EHDAA:9127
xref: FMA:55559
xref: ncithesaurus:Inferior_Parathyroid_Gland
xref: SCTID:245542009
is_a: UBERON:0001132 ! parathyroid gland
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0007124 {source="http://emedicine.medscape.com/article/845125-overview"} ! pharyngeal pouch 3
relationship: has_developmental_contribution_from UBERON:0010025 {source="EHDAA2", notes="epithelium"} ! dorsal part of pharyngeal pouch 3
[Term]
id: UBERON:0006756
name: median lingual swelling
def: "During the third week of embryological development there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings which rise from the inner surface of the mandibular arch and meet in the middle line. The site of their meeting remains post-embryonically as the median sulcus of the tongue. The tuberculum impar is said to form the central part of the tongue immediately in front of the foramen cecum, but Hammar insists that it is purely a transitory structure and forms no part of the adult tongue[WP, Gray's]." [Wikipedia:Tuberculum_impar]
comment: The thyroid initially develops caudal to the tuberculum impar . This embryonic swelling arises from the first pharyngeal arch and occurs midline on the floor of the developing pharynx, eventually helping form the tongue as the 2 lateral lingual swellings overgrow it. [http://emedicine.medscape.com/article/845125-overview]
synonym: "median lingual swelling" EXACT [EHDAA2:0001081]
synonym: "median tongue bud" EXACT [http://emedicine.medscape.com/article/845125-overview]
synonym: "tuberculum impar" EXACT []
synonym: "tuberculum linguale mediale" EXACT [Wikipedia:Tuberculum_impar]
xref: EHDAA2:0001081
xref: EMAPA:17187
xref: http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray979.png
xref: SCTID:308821003
xref: VHOG:0000730
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0004362 ! pharyngeal arch 1
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0006260 {source="EHDAA2"} ! lingual swellings
[Term]
id: UBERON:0006757
name: lateral lingual swelling
def: "During the third week there appears, immediately behind the ventral ends of the two halves of the mandibular arch, a rounded swelling named the tuberculum impar, which was described by His as undergoing enlargement to form the buccal part of the tongue. More recent researches, however, show that this part of the tongue is mainly, if not entirely, developed from a pair of lateral swellings (or distal tongue bud) which rise from the inner surface of the mandibular arch and meet in the middle line." [Wikipedia:Lateral_lingual_swelling]
comment: Structure notes: paired
synonym: "lateral lingual prominence" RELATED []
synonym: "lateral swellings" RELATED [Wikipedia:Lateral_lingual_swelling]
synonym: "tuberculum laterale" RELATED [Wikipedia:Lateral_lingual_swelling]
synonym: "tuberculum linguale laterale" RELATED LATIN [Wikipedia:Lateral_lingual_swelling]
xref: EHDAA2:0000911
xref: EMAPA:17189
xref: http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray979.png
xref: VHOG:0000731
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0004362 ! pharyngeal arch 1
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0006260 ! lingual swellings
[Term]
id: UBERON:0006761
name: corneo-scleral junction
def: "The corneal limbus is the border of the cornea and the sclera (the white of the eye). The limbus is a common site for the occurrence of corneal epithelial neoplasm. Limbus contains radially oriented fibrovascular ridges known as the palisades of Vogt that may harbour a stem cell population[WP]. An annular transitional zone, approximately 1 mm wide, between the cornea and the bulbar conjunctiva and sclera. It is highly vascular and is involved in the metabolism of the cornea. It is ophthalmologically significant in that it appears on the outer surface of the eyeball as a slight furrow, marking the line between the clear cornea and the sclera. (Dictionary of Visual Science, 3d ed)[MeSH]" [Wikipedia:Corneal_limbus]
subset: vertebrate_core
synonym: "corneal limbus" EXACT [FMA:58342]
synonym: "corneal limbus" RELATED [GAID:896]
synonym: "corneal-scleral limbus" EXACT [PMID:17051547]
synonym: "corneoscleral junction" RELATED [GAID:896]
synonym: "limbus corneae" RELATED [Wikipedia:Corneal_limbus]
synonym: "limbus corneae" RELATED LATIN [Wikipedia:Corneal_limbus]
synonym: "sclerocorneal junction" EXACT [FMA:58342]
synonym: "sclerocorneal limbus" RELATED [GAID:896]
xref: EFO:0001403
xref: FMA:58342
xref: GAID:896
xref: http://upload.wikimedia.org/wikipedia/commons/3/3d/Limbus.png
xref: MESH:A.09.371.060.217.659
xref: SCTID:63716004
xref: ZFA:0005570
is_a: UBERON:0000015 ! anatomical boundary
relationship: adjacent_to UBERON:0000964
relationship: adjacent_to UBERON:0001773
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0000964 ! cornea
intersection_of: adjacent_to UBERON:0001773 ! sclera
relationship: adjacent_to UBERON:0000964 ! cornea
relationship: adjacent_to UBERON:0001773 ! sclera
[Term]
id: UBERON:0006762
name: suspensory ligament of lens
def: "The zonule of Zinn (Zinn's membrane, ciliary zonule) is a ring of fibrous strands connecting the ciliary body with the crystalline lens of the eye. The zonule of Zinn is split into two layers: a thin layer, which lines the hyaloid fossa, and a thicker layer, which is a collection of zonular fibers. Together, the fibers are known as the suspensory ligament of the lens[WP]. Modified or toughened vitreous that suspend the lens at the equator to the non-pigmented epithelium of the ciliary zone. In zebrafish, dorsal zonules are thickened as compared to ventral zonules. In both dorsal and ventral regions, these fibers delimit the vitreous body aqueous humor boundary[ZFA]." [Wikipedia:Zonule_of_Zinn]
subset: vertebrate_core
synonym: "ciliary zonule" EXACT [FMA:58838]
synonym: "ciliary zonule" RELATED [Wikipedia:Zonule_of_Zinn]
synonym: "suspensory ligament of the lens" RELATED [Wikipedia:Zonule_of_Zinn]
synonym: "Zinn's membrane" EXACT [FMA:58838]
synonym: "zonula" RELATED [Wikipedia:Zonule_of_Zinn]
synonym: "zonula ciliaris" RELATED [Wikipedia:Zonule_of_Zinn]
synonym: "zonula ciliaris" RELATED LATIN [Wikipedia:Zonule_of_Zinn]
synonym: "zonular fiber" RELATED [Wikipedia:Zonule_of_Zinn]
synonym: "zonule" RELATED [Wikipedia:Zonule_of_Zinn]
synonym: "zonule of Zinn" EXACT [FMA:58838]
synonym: "zonules" EXACT PLURAL [ZFA:0005573]
xref: FMA:58838
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Schematic_diagram_of_the_human_eye_en.svg
xref: SCTID:362524000
xref: ZFA:0005573
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: continuous_with UBERON:0000965 ! lens of camera-type eye
relationship: continuous_with UBERON:0001775 ! ciliary body
relationship: develops_from UBERON:0001797 {source="ZFA"} ! vitreous humor
relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye
[Term]
id: UBERON:0006763
name: epithelium of conjunctiva
def: "Layer of nonkeratinized squamous epithelium lining the conjunctiva, overlying scleral tissue" []
synonym: "conjunctiva epithelium" EXACT [FMA:62131]
synonym: "conjunctival epithelium" EXACT [BTO:0005131]
xref: BTO:0005131
xref: EFO:0001916
xref: FMA:62131
xref: ncithesaurus:Conjunctival_Epithelium
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010304 {source="FMA"} ! nonkeratinizing stratified squamous epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001811
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001811 ! conjunctiva
relationship: part_of UBERON:0001811 ! conjunctiva
relationship: part_of UBERON:0001811 {source="BTO"} ! conjunctiva
[Term]
id: UBERON:0006764
name: anterior communicating artery
def: "In human anatomy, the anterior communicating artery is a blood vessel of the brain that connects the left and right anterior cerebral arteries. The anterior communicating artery connects the two anterior cerebral arteries across the commencement of the longitudinal fissure. Sometimes this vessel is wanting, the two arteries joining together to form a single trunk, which afterward divides; or it may be wholly, or partially, divided into two. Its length averages about 4 mm, but varies greatly. It gives off some of the anteromedial ganglionic vessels, but these are principally derived from the anterior cerebral artery. It is part of the cerebral arterial circle, also known as the circle of Willis." [Wikipedia:Anterior_communicating_artery]
synonym: "arteria communicans anterior" RELATED LATIN [Wikipedia:Anterior_communicating_artery]
xref: EHDAA2:0000586
xref: EMAPA:18599
xref: FMA:50169
xref: http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg
xref: ncithesaurus:Anterior_Communicating_Artery
xref: SCTID:181311009
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0006347 ! communicating artery
relationship: branch_of UBERON:0001624 ! anterior cerebral artery
relationship: part_of UBERON:0003709 ! circle of Willis
[Term]
id: UBERON:0006765
name: left anterior vena cava
xref: EMAPA:18418
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0001585 ! anterior vena cava
[Term]
id: UBERON:0006766
name: right anterior vena cava
comment: The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003). Note that FMA:4720 is equivalent to both anterior vena cava and right anterior vena cava
xref: EMAPA:18419
xref: FMA:4720
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0001585 ! anterior vena cava
[Term]
id: UBERON:0006767
name: head of femur
def: "The hemispheric articular surface at the upper extremity of the thigh bone[Stedman, 26th ed]. The femur head is the highest part of the thigh bone. It is supported by the neck of the femur. The head is globular and forms rather more than a hemisphere, is directed upward, medialward, and a little forward, the greater part of its convexity being above and in front. Its surface is smooth, coated with cartilage in the fresh state, except over an ovoid depression, the fovea capitis femoris, which is situated a little below and behind the center of the head, and gives attachment to the ligament of head of femur. If there is a fracture of the neck of the femur, the blood supply through the ligament becomes crucial. In orthopedic surgery, the head of the femur is important because it can undergo avascular necrosis and consequent osteochondritis dissecans. The head is removed in total hip replacement surgery [WP]." [MESH:A.02.835.232.500.247.343, Wikipedia:Femur_head]
synonym: "acetabular head" EXACT [AAO:0000892]
synonym: "capital femoral epiphysis" RELATED [http://medical-dictionary.thefreedictionary.com/capital+femoral+epiphysis]
synonym: "caput femoris" RELATED [AAO:0000892, Wikipedia:Femur_head]
synonym: "caput femoris" RELATED LATIN [Wikipedia:Femur_head]
synonym: "femoral head" EXACT [FMA:32851]
synonym: "femur head" RELATED [MESH:A.02.835.232.500.247.343]
xref: AAO:0000892
xref: FMA:32851
xref: galen:FemoralHead
xref: http://upload.wikimedia.org/wikipedia/commons/9/97/Gray243.png
xref: MESH:A.02.835.232.500.247.343
xref: ncithesaurus:Head_of_the_Femur
xref: SCTID:361791000
property_value: UBPROP:0000001 "Proximal head of the femur, which articulates with the acetabulum.[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
relationship: adjacent_to UBERON:0001269 ! acetabular part of hip bone
relationship: part_of UBERON:0004412 ! proximal epiphysis of femur
[Term]
id: UBERON:0006768
name: epiphyseal line
synonym: "epiphysial junction" EXACT [FMA:9918]
synonym: "line of bony union" EXACT [FMA:9918]
xref: FMA:9918
xref: SCTID:333108008
is_a: UBERON:0010361 {source="FMA"} ! synostosis
relationship: develops_from UBERON:0002516 ! epiphyseal plate
relationship: part_of UBERON:0001438 ! metaphysis
[Term]
id: UBERON:0006770
name: apophysis
xref: FMA:75428
xref: SCTID:65000005
is_a: UBERON:0004530 ! bony projection
[Term]
id: UBERON:0006771
name: long bone epiphyseal plate proliferative zone
def: "germinal layer of the epiphyseal plate where cells are actively dividing as well as producing extracellular matrix[MP]." [MP:0003662]
comment: In this zone, chondrocytes undergo rapid mitosis, forming distinctive looking stacks[WP]
synonym: "epiphyseal plate proliferative zone" EXACT []
synonym: "zone of proliferation" RELATED [MA:0002976]
xref: MA:0002976
is_a: UBERON:0006775 ! zone of epiphyseal plate
[Term]
id: UBERON:0006772
name: long bone epiphyseal plate hypertrophic zone
def: "the layer of the epiphyseal plate of a long bone where chondrocytes mature and enlarge[MP]." [https://sourceforge.net/tracker/?func=detail&aid=3442184&group_id=76834&atid=1205376, MP:0000165]
comment: note that there is also MA:0002849
synonym: "epiphyseal plate hypertrophic zone" EXACT []
synonym: "hypertrophic chondrocyte zone" RELATED [MP:0000165]
synonym: "maturation zone" RELATED [MA:0002977]
synonym: "zone of hypertrophic chondrocytes" RELATED [MA:0002977]
xref: MA:0002977
is_a: UBERON:0006775 ! zone of epiphyseal plate
[Term]
id: UBERON:0006773
name: long bone epiphyseal plate ossification zone
def: "layer of the epiphyseal plate where new bone matrix is deposited[MP]." [MP:0006399]
synonym: "epiphyseal plate ossification zone" EXACT []
is_a: UBERON:0006775 ! zone of epiphyseal plate
[Term]
id: UBERON:0006775
name: zone of epiphyseal plate
is_a: UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0002516 ! epiphyseal plate
[Term]
id: UBERON:0006776
name: annular epiphysis
def: "secondary growth centers occurring as rings at the periphery of the superior and inferior surfaces of the vertebral body." [http://medical-dictionary.thefreedictionary.com/epiphysis]
comment: note that here epiphysis means deriving from a separate ossification center
synonym: "anular epiphysis" EXACT [FMA:75792]
xref: FMA:75792
is_a: UBERON:0005913 ! zone of bone organ
relationship: adjacent_to UBERON:0001075 ! body of vertebra
[Term]
id: UBERON:0006777
name: tectal plate
def: "embryologic structure that is formed by two longitudinal eminences, one on each alar plate of the midbrain. These eminences become the superior colliculus and inferior colliculus ( Carpenter-1983 )]" [http://braininfo.rprc.washington.edu/centraldirectory.aspx?type=a&ID=453]
comment: The term "tectal plate" (or "quadrigeminal plate") is used to describe the junction of the gray and white matter in the embryo. (NeuroNames ancil-453)
synonym: "lamina quadrigemina" EXACT [FMA:77488, FMA:TA]
synonym: "quadrigeminal plate" EXACT [FMA:77488]
xref: FMA:77488
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006779
name: superficial white layer of superior colliculus
def: "superficial white matter layer of superior collilculus that consists mainly of axions from the optic nerve." [Wikipedia:Superior_colliculus#Neural_circuit]
synonym: "lamina colliculi superioris iii" EXACT [FMA:71112, FMA:TA]
synonym: "lamina III of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit]
synonym: "layer III of superior colliculus" EXACT [FMA:71112]
synonym: "optic layer" EXACT [FMA:71112]
synonym: "optic layer of superior colliculus" EXACT [FMA:71112]
synonym: "stratum opticum colliculi superioris" EXACT [FMA:71112, FMA:TA]
xref: ABA:SCop
xref: FMA:71112
property_value: "spatially_disjoint_from" UBERON:0006120
property_value: "spatially_disjoint_from" UBERON:0006780
is_a: UBERON:0006786 ! white matter layer of superior colliculus
is_a: UBERON:0006791 ! superficial layer of superior colliculus
[Term]
id: UBERON:0006780
name: zonal layer of superior colliculus
def: "a thin layer consisting of small myelinated axons together with marginal and horizontal cells." [Wikipedia:Superior_colliculus#Neural_circuit]
synonym: "lamina colliculi superioris i" EXACT [FMA:72406, FMA:TA]
synonym: "lamina I of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit]
synonym: "layer I of superior colliculus" EXACT [FMA:72406]
synonym: "stratum zonale of superior colliculus" EXACT [FMA:72406]
xref: ABA:SCzo
xref: FMA:72406
property_value: "spatially_disjoint_from" UBERON:0006120
property_value: "spatially_disjoint_from" UBERON:0006779
is_a: UBERON:0006785 ! gray matter layer of superior colliculus
is_a: UBERON:0006791 ! superficial layer of superior colliculus
[Term]
id: UBERON:0006782
name: stratum lemnisci of superior colliculus
xref: FMA:72408
is_a: UBERON:0006785 ! gray matter layer of superior colliculus
[Term]
id: UBERON:0006783
name: layer of superior colliculus
def: "The microstructure of the optic tectum / superior colliculus varies across species. As a general rule, there is always a clear distinction between superficial layers, which receive input primarily from the visual system and show primarily visual responses, and deeper layers, which receive many types of input and project to numerous motor-related brain areas. The distinction between these two zones is so clear and consistent that some anatomists have suggested that they should be considered separate brain structures. In mammals, neuroanatomists conventionally identify seven layers[WP]." [Wikipedia:Superior_colliculus#Neural_circuit]
xref: NIF_GrossAnatomy:nlx_anat_1005033
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0001945
intersection_of: UBERON:0004923 ! organ component layer
intersection_of: part_of UBERON:0001945 ! superior colliculus
relationship: part_of UBERON:0001945 ! superior colliculus
[Term]
id: UBERON:0006785
name: gray matter layer of superior colliculus
xref: FMA:77870
is_a: UBERON:0006783 ! layer of superior colliculus
[Term]
id: UBERON:0006786
name: white matter layer of superior colliculus
xref: FMA:83899
xref: NIF_GrossAnatomy:birnlex_1023
is_a: UBERON:0006783 ! layer of superior colliculus
[Term]
id: UBERON:0006787
name: middle white layer of superior colliculus
subset: vertebrate_core
synonym: "intermediate white layer" EXACT [FMA:71113]
synonym: "intermediate white layer of superior colliculus" EXACT [FMA:71113]
synonym: "lamina colliculi superioris v" EXACT [FMA:71113, FMA:TA]
synonym: "lamina V of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit]
synonym: "layer V of superior colliculus" EXACT [FMA:71113]
synonym: "stratum album intermediale of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit]
synonym: "stratum medullare intermedium colliculi superioris" EXACT [FMA:71113, FMA:TA]
xref: FMA:71113
xref: TAO:0001351
xref: ZFA:0001351
is_a: UBERON:0006786 ! white matter layer of superior colliculus
is_a: UBERON:0006792 ! intermediate layer of superior colliculus
[Term]
id: UBERON:0006788
name: middle gray layer of superior colliculus
subset: vertebrate_core
synonym: "intermediate gray layer" EXACT [FMA:72409]
synonym: "intermediate grey layer of superior colliculus" EXACT [FMA:72409]
synonym: "lamina colliculi superioris iv" EXACT [FMA:72409, FMA:TA]
synonym: "lamina IV of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit]
synonym: "layer IV of superior colliculus" EXACT [FMA:72409]
synonym: "stratum griseum intermediale of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit]
synonym: "stratum griseum intermedium colliculi superioris" EXACT [FMA:72409, FMA:TA]
xref: FMA:72409
xref: TAO:0001350
xref: ZFA:0001350
is_a: UBERON:0006785 ! gray matter layer of superior colliculus
is_a: UBERON:0006792 ! intermediate layer of superior colliculus
[Term]
id: UBERON:0006789
name: deep gray layer of superior colliculus
synonym: "deep grey layer of superior colliculus" EXACT [FMA:72410]
synonym: "lamina colliculi superioris vi" EXACT [FMA:72410, FMA:TA]
synonym: "lamina VI of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit]
synonym: "layer VI of superior colliculus" EXACT [FMA:72410]
synonym: "stratum griseum profundum colliculi superioris" EXACT [FMA:72410, FMA:TA]
synonym: "stratum griseum profundum of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit]
xref: FMA:72410
is_a: UBERON:0006785 ! gray matter layer of superior colliculus
is_a: UBERON:0006793 ! deep layer of superior colliculus
[Term]
id: UBERON:0006790
name: deep white layer of superior colliculus
def: "deep white matter layer of superior collilculus that consists entirely of fibers." [Wikipedia:Superior_colliculus#Neural_circuit]
subset: vertebrate_core
synonym: "lamina colliculi superioris vii" EXACT [FMA:72416, FMA:TA]
synonym: "lamina VII of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit]
synonym: "layer VII of superior colliculus" EXACT [FMA:72416]
synonym: "stratum album profundum of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit]
xref: FMA:72416
xref: TAO:0000494
xref: ZFA:0000494
is_a: UBERON:0006786 ! white matter layer of superior colliculus
is_a: UBERON:0006793 ! deep layer of superior colliculus
[Term]
id: UBERON:0006791
name: superficial layer of superior colliculus
xref: BM:MB-Tec-SCS
xref: TAO:0000686
xref: ZFA:0000686
is_a: UBERON:0006783 ! layer of superior colliculus
[Term]
id: UBERON:0006792
name: intermediate layer of superior colliculus
xref: BM:MB-Tec-SCI
xref: TAO:0000327
xref: ZFA:0000327
is_a: UBERON:0006783 ! layer of superior colliculus
relationship: adjacent_to UBERON:0006791
relationship: adjacent_to UBERON:0006793
intersection_of: UBERON:0006783 ! layer of superior colliculus
intersection_of: adjacent_to UBERON:0006791 ! superficial layer of superior colliculus
intersection_of: adjacent_to UBERON:0006793 ! deep layer of superior colliculus
relationship: adjacent_to UBERON:0006791 ! superficial layer of superior colliculus
relationship: adjacent_to UBERON:0006793 ! deep layer of superior colliculus
[Term]
id: UBERON:0006793
name: deep layer of superior colliculus
xref: BM:MB-Tec-SCD
is_a: UBERON:0006783 ! layer of superior colliculus
[Term]
id: UBERON:0006794
name: visual processing part of nervous system
comment: This grouping class is primarily to accommodate GO
subset: grouping_class
synonym: "optic lobe" RELATED [GAID:1233]
xref: GAID:1233
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0006795
name: arthropod optic lobe
def: "A region of the adult brain that processes the visual information from the compound eyes." [FBC:gg, ISBN:978-3-11-014898-5]
synonym: "optic lobe" RELATED SENSU [FBbt:00003701]
xref: FBbt:00003701
is_a: UBERON:0006794 ! visual processing part of nervous system
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0006796
name: cephalopod optic lobe
def: "Large lobes of the brain associated with the eyes. In octopods and some squids the optic lobes may be separated from the rest of the brain by an optic stalk of varying length. In Octopus the optic lobes contain 92 million cells compared with only 42 million in the main central mass of the brain (J. Young, 1963) ." [http://tolweb.org/accessory/Cephalopoda_Glossary?acc_id=587]
synonym: "optic lobe" RELATED SENSU []
is_a: UBERON:0006794 ! visual processing part of nervous system
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0006798
name: efferent nerve
def: "A group of neurons that provides a nervous signal to a tissue." [AEO:JB]
xref: AEO:0000202
xref: EHDAA2:0003231
is_a: UBERON:0001021 ! nerve
[Term]
id: UBERON:0006799
name: glandular epithelium
def: "Epithelium composed of secretory cells." [Online_Medical_Dictionary:http://cancerweb.ncl.ac.uk/]
comment: Editor notes: consider splitting epithelium from epithelial tissue
xref: BTO:0002991
xref: ncithesaurus:Glandular_Epithelial_Tissue
xref: ncithesaurus:Glandular_Epithelium
is_a: UBERON:0000483 ! epithelium
relationship: secretes UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0006800
name: anatomical line
def: "Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface." [CARO:MAH]
subset: upper_level
xref: AAO:0010267
xref: AEO:0000008
xref: BILA:0000008
xref: CARO:0000008
xref: EHDAA2:0003008
xref: FMA:9657
xref: HAO:0000008
xref: TAO:0001837
xref: TGMA:0001828
xref: XAO:0004003
xref: ZFA:0001689
property_value: UBPROP:0000001 "Non-material anatomical entity of one dimension, whiVSAO forms a boundary of an anatomical surface or is a modulation of an anatomical surface.[CARO]" xsd:string
is_a: UBERON:0000015 ! anatomical boundary
[Term]
id: UBERON:0006801
name: head of humerus
def: "Hemispherical ball located at the lower end of the humerus that stands out prominently from the surrounding structures toward the flexor surface of the forelimb and fits into the socket joint of the olecranon process." [AAO:0000838]
synonym: "eminentia capitata" RELATED [AAO:0000838]
synonym: "humeral head" EXACT [FMA:13304]
synonym: "radial condyle" RELATED [AAO:0000838]
xref: AAO:0000838
xref: FMA:13304
xref: galen:HeadOfHumerus
xref: ncithesaurus:Head_of_the_Humerus
xref: SCTID:181924000
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0004411 ! proximal epiphysis of humerus
[Term]
id: UBERON:0006802
name: acetabular rim
def: "Cartilaginous ring that forms the entire acetabular margin." [AAO:0000864]
xref: AAO:0000864
xref: FMA:16941
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001269 ! acetabular part of hip bone
[Term]
id: UBERON:0006803
name: obturator foramen
def: "The obturator foramen is the hole created by the ischium and pubis bones of the pelvis through which nerves and muscles pass." [Wikipedia:Obturator_foramen]
synonym: "foramen obturatorium" EXACT [FMA:16999]
synonym: "foramen obturatum" RELATED LATIN [Wikipedia:Obturator_foramen]
xref: AAO:0000863
xref: FMA:16999
xref: http://upload.wikimedia.org/wikipedia/commons/f/ff/Skeletpelvis-pubis.jpg
xref: ncithesaurus:Obturator_Foramen
xref: SCTID:361777006
property_value: UBPROP:0000001 "Small opening for the passage of the obturatorius nerve that perforates the pubis.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass pelvic girdle opening (AAO:0000767)[AAO]" xsd:string
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0007832 {source="AAO"} ! skeleton of pelvic girdle
[Term]
id: UBERON:0006804
name: reticular tissue
def: "Loose connective tissue which consists of an irregular network of cells and reticular fibers and is spatially associated with myeloid and lymphoid cells. Examples: stroma of bone marrow, stroma of spleen, stroma of lymph node.[FMA]" [FMA:20116, FMA:FMA, Wikipedia:Reticular_fiber]
synonym: "reticular connective tissue" EXACT [FMA:20116]
synonym: "textus connectivus reticularis" EXACT [FMA:20116]
xref: AAO:0000542
xref: FMA:20116
xref: SCTID:57987007
property_value: UBPROP:0000001 "Network of reticular fibres (fine collagen) that form a soft skeleton to support the lymphoid organs (lymph nodes, bone marrow, and spleen).[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass connective tissue proper (AAO:0000099)[AAO]" xsd:string
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001135 ! smooth muscle tissue
[Term]
id: UBERON:0006805
name: sternal end of clavicle
def: "Medial end of the clavicle, which usually lies on the ventral side of the epicoracoid cartilage, just posterior to the epicoracoid bridge." [AAO:0000812]
synonym: "extremitas medialis" RELATED [AAO:0000812]
synonym: "extremitas sternalis (Clavicula)" EXACT [FMA:23297]
synonym: "medial end" RELATED [AAO:0000812]
synonym: "medial end of clavicle" EXACT [FMA:23297]
xref: AAO:0000812
xref: FMA:23297
xref: SCTID:181920009
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001105 ! clavicle
[Term]
id: UBERON:0006806
name: entepicondyle of humerus
def: "A bony projection on the distal epiphysis of the humerus that is the attachment site for the flexor muscles of the manus. This condyle faces posteriorly (for sprawling tetrapods) or medially (for erect tetrapods)." [http://palaeos.com/vertebrates/glossary/glossaryE.html, PHENOSCAPE:ad, Wikipedia:Medial_epicondyle_of_the_humerus]
synonym: "e. medialis humeri" RELATED LATIN [Wikipedia:Medial_epicondyle_of_the_humerus]
synonym: "elbow pit" RELATED [Wikipedia:Medial_epicondyle_of_the_humerus]
synonym: "epicondylus medialis (humerus)" RELATED [FMA:23441]
synonym: "epicondylus medialis humeri" RELATED [AAO:0000782]
synonym: "medial epicondyle" BROAD [AAO:0000782]
synonym: "medial epicondyle of humerus" RELATED HUMAN_PREFERRED [FMA:23441]
synonym: "ulnar condyle of humerus" RELATED [http://www.termiumplus.gc.ca]
synonym: "ventral epicondyle of humerus" RELATED SENSU [Wikipedia:Medial_epicondyle_of_the_humerus]
xref: AAO:0000782
xref: FMA:23441
xref: galen:MedialHumeralEpicondyle
xref: http://palaeos.com/vertebrates/glossary/images/172x202xentepicondyleA1.gif.pagespeed.ic.EoVgrHaVyX.png
xref: http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray329-Medial_epicondyle_of_the_humerus.png
xref: SCTID:181929005
property_value: UBPROP:0000001 "Rounded projection at the distal head of the humerus and medial to the humeral head, which serves as a place of attachment for the flexor muscles antogonistic to those that attach to the lateral epicondyle.[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0009978 {source="FMA"} ! epicondyle
relationship: part_of UBERON:0004404 {source="FMA"} ! distal epiphysis of humerus
[Term]
id: UBERON:0006807
name: ectepicondyle of humerus
def: "A bony projection on the distal epiphysis of the humerus that is the attachment site for the extensor muscles of the distal parts of the forelimb. In humans, this is known as the lateral epicondyle, but the position varies across tetrapods." [http://palaeos.com/vertebrates/glossary/glossaryE.html, PHENOSCAPE:ad, PMID:15064415, Wikipedia:Lateral_epicondyle_of_the_humerus]
synonym: "dorsal epicondyle of humerus" RELATED [NCBITaxon:8782, Wikipedia:Lateral_epicondyle_of_the_humerus]
synonym: "dorsal epicondyle of the humerus" RELATED SENSU [Wikipedia:Lateral_epicondyle_of_the_humerus]
synonym: "e. lateralis humeri" RELATED LATIN [Wikipedia:Lateral_epicondyle_of_the_humerus]
synonym: "ectepicondyle" BROAD [PMID:15064415]
synonym: "epicondylus lateralis (humerus)" EXACT [FMA:23442]
synonym: "epicondylus lateralis humeri" RELATED [AAO:0000758]
synonym: "lateral epicondyle" BROAD [AAO:0000758]
synonym: "lateral epicondyle of humerus" RELATED HUMAN_PREFERRED [FMA:23442]
xref: AAO:0000758
xref: FMA:23442
xref: galen:LateralHumeralEpicondyle
xref: http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray420.png
xref: SCTID:181933003
property_value: UBPROP:0000001 "Rounded projection at the distal head of the humerus (larger and more prominent than the lateral epicondyle) and lateral to the humeral head, which serves as a place of attachment for the mm extensor antebrachii et carpi radialis, extensor digitorum communis, and in part to the m extensor antebrachii et carpi ulnaris.[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0009978 {source="FMA"} ! epicondyle
relationship: part_of UBERON:0004404 {source="FMA"} ! distal epiphysis of humerus
[Term]
id: UBERON:0006809
name: supporting connective tissue
def: "Specialized connective tissue is a connective tissue, which consists of osteocytes and chondrocytes, the intercellular matrix of which is chondrified or calcified.[FMA]" [FMA:37374, FMA:FMA]
comment: made obsolete because FMA:37374 is a General anatomical term rather than a true class in the FMA
synonym: "specialized connective tissue" EXACT [FMA:37374]
is_obsolete: true
[Term]
id: UBERON:0006810
name: olecranon
def: "The olecranon is a large, thick, curved bony eminence of the forearm that projects behind the elbow. It is situated at the upper (proximal) end of the ulna, one of the two bones in the forearm. When the hand faces forward the olecranon faces towards the back (posteriorly). It is bent forward at the summit so as to present a prominent lip which is received into the olecranon fossa of the humerus in extension of the forearm. Its base is contracted where it joins the body and the narrowest part of the upper end of the ulna. Its posterior surface, directed backward, is triangular, smooth, subcutaneous, and covered by a bursa. Its superior surface is of quadrilateral form, marked behind by a rough impression for the insertion of the Triceps brachii; and in front, near the margin, by a slight transverse groove for the attachment of part of the posterior ligament of the elbow-joint. Its anterior surface is smooth, concave, and forms the upper part of the semilunar notch. Its borders present continuations of the groove on the margin of the superior surface; they serve for the attachment of ligaments, viz. , the back part of the ulnar collateral ligament medially, and the posterior ligament laterally. From the medial border a part of the Flexor carpi ulnaris arises; while to the lateral border the anconeus muscle is attached." [Wikipedia:Olecranon]
comment: Check AAO
synonym: "olecranon process" RELATED [Wikipedia:Olecranon]
synonym: "olecranon process of ulna" EXACT [Wikipedia:Olecranon]
synonym: "ulnar process" RELATED [AAO:0000843]
xref: AAO:0000843
xref: FMA:39795
xref: http://upload.wikimedia.org/wikipedia/commons/6/60/Gray212.png
xref: ncithesaurus:Olecranon
xref: SCTID:181949001
property_value: UBPROP:0000001 "Large and thick process situated at the proximal (upper) end of the ulna. Its inner face forms the medial articular surface that articulates with the humeral head.[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0006822 ! proximal epiphysis of ulna
[Term]
id: UBERON:0006811
name: occipital condyle
def: "The occipital condyles are undersurface facets of the occipital bone in vertebrates, which function in articulation with the superior facets of the atlas vertebra. The condyles are oval or reniform (kidney-shaped) in shape, and their anterior extremities, directed forward and medialward, are closer together than their posterior, and encroach on the basilar portion of the bone; the posterior extremities extend back to the level of the middle of the foramen magnum. The articular surfaces of the condyles are convex from before backward and from side to side, and look downward and lateralward. To their margins are attached the capsules of the atlantoC6ccipital articulations, and on the medial side of each is a rough impression or tubercle for the alar ligament. At the base of either condyle the bone is tunnelled by a short canal, the hypoglossal canal." [Wikipedia:Occipital_condyle]
comment: birds have a single occipital condyle[WP]
synonym: "condylus occipitalis" RELATED LATIN [Wikipedia:Occipital_condyle]
xref: AAO:0000330
xref: FMA:52861
xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Gray129.png
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001693 ! exoccipital bone
[Term]
id: UBERON:0006812
name: mental foramen
def: "The mental foramen is one of two holes (\"foramina\") located on the anterior surface of the mandible. It permits passage of the mental nerve and vessels. The mental foramen descends slightly in edentulous individuals." [Wikipedia:Mental_foramen]
synonym: "foramen mentale" RELATED LATIN [Wikipedia:Mental_foramen]
synonym: "foramen mentalis" RELATED [Wikipedia:Mental_foramen]
synonym: "mental foramina" EXACT PLURAL [OBOL:automatic]
xref: AAO:0000298
xref: FMA:53171
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Gray176.png
xref: SCTID:244686000
is_a: UBERON:0005744 {source="FMA"} ! cranial conduit
relationship: surrounded_by UBERON:0001684 ! mandible
[Term]
id: UBERON:0006813
name: nasal skeleton
def: "Structural framework that provides support to the nasal sacs and ducts." [AAO:0000320]
synonym: "skeleton of nose" EXACT [FMA:60116]
xref: AAO:0000320
xref: FMA:60116
xref: SCTID:281486007
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: subdivision_of UBERON:0000004
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0000004 {source="FMA"} ! olfactory apparatus
relationship: part_of UBERON:0003113 {source="Kardong-abduced", notes="facial series"} ! dermatocranium
relationship: part_of UBERON:0011156 ! facial skeleton
relationship: subdivision_of UBERON:0000004 ! olfactory apparatus
[Term]
id: UBERON:0006815
name: areolar connective tissue
def: "Loose connective tissue located at the outer and inner layers of organs. Examples: submucosal connective tissue, tunica adventitia of artery, papillary dermis, superficial fascia of dorsum of hand.[FMA]" [FMA:63897, FMA:FMA]
comment: consider adding separate class for LCT
synonym: "loose areolar connective tissue" EXACT [FMA:63897]
synonym: "loose connective tissue" EXACT [AAO:0000027]
xref: AAO:0000027
xref: FMA:63897
xref: ncithesaurus:Loose_Connective_Tissue
xref: SCTID:68477002
property_value: UBPROP:0000001 "Also known as loose connective tissue. A pliable, mesh-like tissue with a fluid matrix that functions to cushion and protect body organs.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass connective tissue proper (AAO:0000099)[AAO]" xsd:string
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0000030 ! lamina propria
[Term]
id: UBERON:0006820
name: body of sternum
def: "The body of the sternum (gladiolus), considerably lengthier, narrower, and thinner than the manubrium, attains its greatest breadth close to the lower end." [Wikipedia:Body_of_sternum]
comment: AAO - Proximal portion of the sternum, usually elaborated into a stylum that may be ossified. [AAO:0000939]
synonym: "body of the sternum" RELATED [Wikipedia:Body_of_sternum]
synonym: "corpus sterni" RELATED LATIN [Wikipedia:Body_of_sternum]
synonym: "gladiolus of sternum" EXACT [FMA:7487]
synonym: "mesosternum" EXACT [FMA:7487]
synonym: "sternal body" EXACT [FMA:7487]
xref: AAO:0000939
xref: FMA:7487
xref: http://upload.wikimedia.org/wikipedia/commons/2/23/Gray116.png
xref: SCTID:361743001
property_value: UBPROP:0000001 "Proximal portion of the sternum, usually elaborated into a stylum that may be ossified.[AAO]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000975 ! sternum
[Term]
id: UBERON:0006821
name: cutaneous muscle
xref: AAO:0000119
xref: FMA:74996
xref: ncithesaurus:Cutaneous_Muscle
is_a: UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0001774 ! muscle of trunk
[Term]
id: UBERON:0006822
name: proximal epiphysis of ulna
def: "The head of ulna presents an articular surface, part of which, of an oval or semilunar form, is directed downward, and articulates with the upper surface of the triangular articular disk which separates it from the wrist-joint; the remaining portion, directed lateralward, is narrow, convex, and received into the ulnar notch of the radius." [Wikipedia:Head_of_ulna]
synonym: "caput ulnae" EXACT [FMA:33751, FMA:TA]
synonym: "caput ulnae" RELATED LATIN [Wikipedia:Head_of_ulna]
synonym: "head of ulna" EXACT [FMA:33751]
synonym: "proximal end of ulna" EXACT [FMA:33751]
synonym: "upper end of ulna" EXACT [FMA:33751]
xref: FMA:33751
xref: galen:HeadOfUlna
xref: SCTID:304590006
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004386 ! epiphysis of ulna
relationship: part_of UBERON:0001424
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0001424 ! ulna
relationship: part_of UBERON:0001424 ! ulna
[Term]
id: UBERON:0006828
name: trabecula carnea of atrium
def: "the supporting bundles of muscular fibers lining the walls of the atria[MP]." [MP:0010581]
comment: Dubious: Not present in any AO. Note that WP states that trabecular carnea are ventricular and 'They should not be confused with the pectinate muscles, which are present in the right[1] and left atria only'
is_a: UBERON:0002511 ! trabecula carnea
relationship: part_of UBERON:0002081
intersection_of: UBERON:0002511 ! trabecula carnea
intersection_of: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0006829
name: remnant of left anterior vena cava
def: "." [Wikipedia:Persistent_left_superior_vena_cava]
comment: The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003).
is_a: UBERON:0004148 ! coronary vein
relationship: develops_from UBERON:0006765 ! left anterior vena cava
relationship: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0006831
name: pre-tracheal muscle
synonym: "pretracheal muscle" EXACT [MA:0001798]
xref: EMAPA:25142
xref: MA:0001798
is_a: UBERON:0000933 ! pharyngeal muscle
[Term]
id: UBERON:0006832
name: lumen of open tracheal system trachea
synonym: "tracheal lumen" RELATED SENSU [FBbt:00007410]
xref: FBbt:00007410
is_a: UBERON:0000464 ! anatomical space
relationship: surrounded_by UBERON:0003127
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: surrounded_by UBERON:0003127 ! open tracheal system trachea
relationship: surrounded_by UBERON:0003127 ! open tracheal system trachea
[Term]
id: UBERON:0006833
name: lumen of trachea
synonym: "lumen of cartilaginous trachea" EXACT [OBOL:automatic]
synonym: "tracheal lumen" EXACT [FMA:7469]
xref: FMA:7469
xref: SCTID:197486000
is_a: UBERON:0000464 ! anatomical space
relationship: surrounded_by UBERON:0003126
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: surrounded_by UBERON:0003126 ! trachea
relationship: surrounded_by UBERON:0003126 ! trachea
[Term]
id: UBERON:0006834
name: uterus or analog
def: "An internal female reproductive organ that is the site of embryo development." []
subset: grouping_class
synonym: "uterus" BROAD SENSU [FBbt:00004924]
xref: FBbt:00004924
xref: TADS:0000421
xref: WBbt:0006760
is_a: UBERON:0003975 ! internal female genitalia
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0006835
name: arthropod oviduct
def: "A tube that connects ovary to the uterus." [TADS:0000415]
xref: FBbt:00004911
xref: TADS:0000415
is_a: UBERON:0003914 {source="FBbt"} ! epithelial tube
is_a: UBERON:0005156 ! reproductive structure
relationship: continuous_with UBERON:0000992 ! female gonad
relationship: continuous_with UBERON:0006834 ! uterus or analog
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0006836
name: medial tibial tarsal bone
def: "Endochondral tarsal bone that is medially located and between the intermedium and centralia." [VSAO:0005048]
synonym: "tibiale" RELATED [AAO:0000912, MA:0001350]
xref: AAO:0000912
xref: MA:0001350
xref: VSAO:0005048
property_value: UBPROP:0000001 "One of two element that constitute the basal row of tarsals. The tibiale constitutes the postaxial element. In salamanders this element is aproximatelly rounded, whereas in anurans it is an elongate, cylindrical bone with the proximal and distal heads fused to the heads of the fibulare.[AAO]" xsd:string
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0006837
name: tegmen tympani
def: "The Tegmental Wall or Roof (paries tegmentalis) is formed by a thin plate of bone, the tegmen tympani, which separates the cranial and tympanic cavities. It is situated on the anterior surface of the petrous portion of the temporal bone close to its angle of junction with the squama temporalis; it is prolonged backward so as to roof in the tympanic antrum, and forward to cover in the semicanal for the Tensor tympani muscle. Its lateral edge corresponds with the remains of the petrosquamous suture[Grays] ." [http://education.yahoo.com/reference/gray/subjects/subject/230]
comment: todo - check AAO; grouping is made on basis of related synonym. Crista parotica: seems to be the same as the crista prootica. However, since this lateral ridge of the otic capsule is frequently formed by the opisthotic, rather than the prootic, this may be a better name.; Crista prootica: a ledge or ridge which elaborates the dorsal surface of the prootic or, more generally, the roof of the otic capsule, laterally. The crista may extend posteriorly & laterally, continuous with the paroccipital process, and/or anteriorly or anteroventrally to protect cranial nerve foramina and form part of the fenestra ovalis/vestibuli. In basal tetrapodomorphs and tetrapods, the crista prootica forms the floor of the posttemporal fenestra. See The Prootic. In many tetrapods, the crista prootica is not ossified, or incompletely ossified. However, in frogs, the crista is the main strut joining the skull roofing bones (frontoparietals) with the squamosals. The crista prootica has a similarly expanded role in mammals where it forms an important part of the epitympanic recess and anchors the tympanohyal.[http://www.palaeos.com]
subset: dubious_grouping
synonym: "crista parotica" RELATED HOMOLOGY [AAO:0000116]
synonym: "crista prootica" RELATED HOMOLOGY [AAO:0000116, http://www.palaeos.com/Vertebrates/Lists/Glossary/GlossaryCr.html]
synonym: "paries tegmentalis cavi tympani" EXACT [FMA:56002, FMA:TA]
synonym: "processus muscularis capsulae auditivae" RELATED [AAO:0000116]
synonym: "processus squamosus" RELATED HOMOLOGY [AAO:0000116]
synonym: "tegmental roof of tympanic cavity" EXACT [FMA:56002]
synonym: "tegmental wall of tympanic cavity" EXACT [FMA:56002]
xref: AAO:0000116
xref: FMA:56002
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0006838
name: anterior ramus of spinal nerve
def: "The ventral ramus (anterior ramus, anterior branch, anterior divisions of the spinal nerves) supply the antero-lateral parts of the trunk, and the limbs; they are for the most part larger than the posterior divisions. In the thoracic region they remain distinct from each other and each innervates a narrow strip of muscle and skin along the sides, chest, ribs, and abdominal wall. These rami are called the intercostal nerves. In regions other than the thoracic, ventral rami converge with each other to form networks of nerves called nerve plexuses. Within each plexus, fibers from the various ventral rami branch and become redistributed so that each nerve exiting the plexus has fibers from several different spinal nerves. One advantage to having plexuses is that damage to a single spinal nerve will not completely paralyze a limb. There are four main plexuses formed by the ventral rami: The cervical plexus contains ventral rami from spinal nerves C1-C5. Branches of the cervical plexus, which include the phrenic nerve, innervate muscles of the neck, the diaphragm, and the skin of the neck and upper chest. The brachial plexus contains ventral rami from spinal nerves C5-T1. This plexus innervates the pectoral girdle and upper limb. The lumbar plexus contains ventral rami from spinal nerves L1-L4. The sacral plexus contains ventral rami from spinal nerves L4-S4. The lumbar and sacral plexuses innervate the pelvic girdle and lower limbs. The Ventral rami, including the sinuvertebral nerve branches, supply structures anterior to the facet joint, including the vertebral bodies, the discs and their ligaments and joints other spinal nerves to form the lumbo-sacral plexus." [Wikipedia:Anterior_ramus_of_spinal_nerve]
synonym: "anterior primary ramus of spinal nerve" EXACT [FMA:5982]
synonym: "ramus anterior" BROAD [FMA:5982]
synonym: "ramus anterior nervi spinalis" RELATED LATIN [Wikipedia:Anterior_ramus_of_spinal_nerve]
synonym: "ventral ramus of spinal nerve" EXACT [FMA:5982]
xref: FMA:5982
xref: http://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg
is_a: UBERON:0001021 ! nerve
relationship: branch_of UBERON:0005476 ! spinal nerve trunk
relationship: part_of UBERON:0001780 ! spinal nerve
[Term]
id: UBERON:0006839
name: posterior ramus of spinal nerve
def: "The posterior (or dorsal) branches (or divisions) of the spinal nerves are as a rule smaller than the anterior divisions. They are also referred to as the dorsal rami. They are directed backward, and, with the exceptions of those of the first cervical, the fourth and fifth sacral, and the coccygeal, divide into medial and lateral branches for the supply of the muscles and skin of the posterior part of the trunk. Shortly after a spinal nerve exits the intervertebral foramen, it branches into the dorsal ramus, ventral ramus, and rami communicantes. Each of these latter three structures carries both sensory and motor information. Because each spinal nerve carries both sensory and motor information, spinal nerves are referred to as bmixed nerves. b Dorsal rami carry visceral motor, somatic motor, and sensory information to and from the skin and muscles of the back. Dorsal rami remain distinct from each other, and each innervates a narrow strip of skin and muscle along the back, more or less at the level from which the ramus leaves the spinal nerve. The smaller, posteriorly-directed major terminal branch (with the ventral primary ramus) of all 31 pairs of mixed spinal nerves, formed at the intervertebral foramen and turning abruptly posteriorly to divide into lateral and medial branches, both of which will supply the deep (true) muscles of the back. The medial branch (rami medialis) of the dorsal primary ramus also supplies articular branches to the zygopophyseal joints and the periosteum of the vertebral arch. In the neck and upper back, the medial branch continues through the deep and superficial back muscles to supply overlying skin; in the lower back, the lateral branch does this. Nomina Anatomica lists dorsal primary rami as \"rami dorsales\" for each group of spinal nerves: 1) cervical (nervorum cervicalium), 2) thoracic (nervorum thoracicorum), 3) lumbar (nervorum lumbalium), 4) sacral (nervorum sacralium), and 5) coccygeal (nervi coccygei). Synonyms: ramus dorsalis nervorum spinalium, ramus dorsalis, rami posteriores nervorum spinalium, dorsal branch, posterior primary division." [Wikipedia:Posterior_ramus_of_spinal_nerve]
synonym: "dorsal ramus" EXACT [FMA:5983]
synonym: "dorsal ramus of spinal nerve" EXACT [FMA:5983]
synonym: "posterior primary ramus" EXACT [FMA:5983]
synonym: "ramus posterior" BROAD [FMA:5983]
synonym: "ramus posterior nervi spinalis" RELATED LATIN [Wikipedia:Posterior_ramus_of_spinal_nerve]
xref: AAO:0010800
xref: FMA:5983
xref: http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png
property_value: UBPROP:0000001 "A thin ramus which branches from the common trunk of the PLLN when it separates from the postotic ganglionic complex. It turns dorsally and extends over the trunk and dorsal fin innervating the dorsal line of neuromasts.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass posterior lateral line nerve (PLLN) (AAO:0010115)[AAO]" xsd:string
is_a: UBERON:0001021 ! nerve
relationship: branch_of UBERON:0005476 ! spinal nerve trunk
relationship: part_of UBERON:0001780 ! spinal nerve
[Term]
id: UBERON:0006840
name: nucleus of lateral lemniscus
comment: not clear if the ZFA class denotes the same entity; check relationship to midbrain tegmentum - this leads to inconsistency with ABA. The FMA class should represnet the grouping, but there is no FMA class for the singular at the moment
subset: vertebrate_core
synonym: "lateral lemniscus nuclei" EXACT [ZFA:0000380]
synonym: "nuclei lemnisci lateralis" EXACT [FMA:84025, FMA:TA]
synonym: "nuclei of lateral lemniscus" RELATED [FMA:84025]
xref: ABA:NLL
xref: EV:0100265
xref: FMA:84025
xref: SCTID:369023003
xref: TAO:0000380
xref: ZFA:0000380
property_value: "spatially_disjoint_from" UBERON:0002128
property_value: "spatially_disjoint_from" UBERON:0002597
property_value: "spatially_disjoint_from" UBERON:0007634
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0006841
name: central vein of liver
def: "Vein that is central to a lobule in the liver." [ZFA:0005168]
subset: vertebrate_core
synonym: "terminal branch of hepatic vein" EXACT [FMA:17544]
synonym: "terminal hepatic venule" EXACT [FMA:17544]
synonym: "vena centralis (Hepar)" EXACT [FMA:17544]
xref: FMA:17544
xref: SCTID:272023004
xref: TAO:0005168
xref: ZFA:0005168
is_a: UBERON:0001143 ! hepatic vein
relationship: part_of UBERON:0004647 ! liver lobule
[Term]
id: UBERON:0006842
name: lymphatic capillary
def: "Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells. Joins to form the lymphatic vessels." [ZFA:0005252]
comment: todo - check superclass
subset: vertebrate_core
synonym: "lymph capillary" EXACT [FMA:5028]
xref: FMA:5028
xref: ncithesaurus:Lymphatic_Capillary
xref: TAO:0005252
xref: ZFA:0005252
property_value: UBPROP:0000001 "Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells.[TAO]" xsd:string
is_a: UBERON:0001473 {source="FMA"} ! lymphatic vessel
is_a: UBERON:0010523 {source="ZFA"} ! microcirculatory vessel
relationship: part_of UBERON:0004536 ! lymph vasculature
[Term]
id: UBERON:0006843
name: root of cranial nerve
comment: Editor note: recommend asserting under this class rather than relying on inference, as relations may change
subset: vertebrate_core
synonym: "cranial nerve root" EXACT [FMA:52609]
synonym: "cranial neural root" EXACT [FMA:52609]
xref: FMA:52609
xref: SCTID:280161004
xref: TAO:0002190
xref: ZFA:0001663
is_a: UBERON:0002211 ! nerve root
relationship: continuous_with UBERON:0001785
intersection_of: UBERON:0002211 ! nerve root
intersection_of: continuous_with UBERON:0001785 ! cranial nerve
relationship: continuous_with UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0006844
name: cusp of tooth
def: "Acellular anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth." [ZFA:0005434]
subset: vertebrate_core
synonym: "cusp" BROAD []
synonym: "tooth cusp" EXACT [FMA:56481]
xref: FMA:56481
xref: ncithesaurus:Tooth_Cusp
xref: SCTID:362107000
xref: TAO:0001973
xref: ZFA:0005434
property_value: UBPROP:0000001 "Anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth.[TAO]" xsd:string
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0003675 ! tooth crown
[Term]
id: UBERON:0006845
name: abductor muscle
def: "A muscle that moves a body part away from the sagittal plane/midline of the body[ZFA]. For example, the abductor muscles of the legs spread the legs away from the midline and away from one another. An abductor muscle opposes an adductor muscle[BTO]." [ZFA:0005269]
comment: note that in FMA the Adbuctor muscle is a subclass of Relation. It's unclear what this actually means, we leave it here as a grouping for now
subset: grouping_class
xref: BTO:0004642
xref: FMA:74997
xref: TAO:0002135
xref: ZFA:0005269
property_value: UBPROP:0000001 "A muscle that moves a body part away from the sagittal plane of the body.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass cranial muscle (TAO:0001953)[TAO]" xsd:string
is_a: UBERON:0001134 ! skeletal muscle tissue
[Term]
id: UBERON:0006846
name: groove
def: "Anatomical line that delineates a furrow or depression in an organ or tissue." [ZFA:0001690]
subset: grouping_class
xref: AAO:0010276
xref: AEO:0000161
xref: EHDAA2:0003161
xref: FMA:75037
xref: TAO:0001838
xref: ZFA:0001690
is_a: UBERON:0006800 ! anatomical line
[Term]
id: UBERON:0006847
name: cerebellar commissure
subset: vertebrate_core
synonym: "commissura cerebelli" EXACT [ZFA:0000490]
xref: FMA:77522
xref: TAO:0000490
xref: ZFA:0000490
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0002317 ! white matter of cerebellum
[Term]
id: UBERON:0006848
name: posterior pretectal nucleus
def: "Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ZFA:0000631]
subset: dubious_grouping
subset: vertebrate_core
synonym: "caudal pretectal nuclei" EXACT [ZFA:0000631]
synonym: "posterior pretectal nucleus" EXACT [ZFA:0000631]
xref: ABA:PPT
xref: FMA:84355
xref: TAO:0000631
xref: ZFA:0000631
property_value: "spatially_disjoint_from" UBERON:0002565
property_value: "spatially_disjoint_from" UBERON:0002711
property_value: "spatially_disjoint_from" UBERON:0002996
is_a: UBERON:0006569 ! diencephalic nucleus
[Term]
id: UBERON:0006849
name: scapula
def: "Endochondral bone that is dorsoventrally compressed and provides attachment site for muscles of the pectoral appendage." [VSAO:0000157]
comment: Usage notes: this class subsumes the scapula of teleosts and tetrapods - note we create a specific subclasses for pectoral limb scapula and pectoral fin scapula
synonym: "scapula bone" RELATED [BTO:0001218]
synonym: "scapulae" EXACT PLURAL [ZFA:0000583]
xref: MESH:A.02.835.232.087.783
xref: VHOG:0001398
xref: VSAO:0000157
is_a: UBERON:0002513 {source="TAO"} ! endochondral bone
is_a: UBERON:0007829 ! pectoral girdle bone
relationship: distally_connected_to UBERON:0007272 ! pectoral appendage skeleton
relationship: part_of UBERON:0007831 {source="ZFA-abduced"} ! skeleton of pectoral girdle
[Term]
id: UBERON:0006850
name: tetrapod pectoral girdle
is_obsolete: true
[Term]
id: UBERON:0006851
name: renal cortex peritubular capillary
xref: MA:0002590
is_a: UBERON:0005272 ! peritubular capillary
relationship: part_of UBERON:0001225
intersection_of: UBERON:0005272 ! peritubular capillary
intersection_of: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0006852
name: glomerular visceral epithelium
synonym: "podocyte layer" RELATED [MA:0002607]
xref: EMAPA:28254
xref: MA:0002607
is_a: UBERON:0004188 ! glomerular epithelium
relationship: part_of UBERON:0000074 ! renal glomerulus
[Term]
id: UBERON:0006853
name: renal cortex tubule
xref: EMAPA:18976
xref: MA:0002609
is_a: UBERON:0007685 ! region of nephron tubule
relationship: part_of UBERON:0001225
intersection_of: UBERON:0007685 ! region of nephron tubule
intersection_of: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001225 {source="MA"} ! cortex of kidney
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0006854
name: distal straight tubule postmacula segment
def: "." [https://sourceforge.net/tracker/?func=detail&aid=3123598&group_id=76834&atid=1205376]
synonym: "cortical thick ascending limb of Henle's loop" EXACT [MA:th]
synonym: "kidney cortex loop of Henle ascending limb thick segment" EXACT [MA:th]
synonym: "renal cortex loop of Henle ascending limb thick segment" EXACT [MA:th]
synonym: "renal cortex thick ascending limb" EXACT [MA:th]
xref: EMAPA:28402
xref: MA:0002615
is_a: UBERON:0006853 ! renal cortex tubule
is_a: UBERON:0008408 ! distal tubular epithelium
relationship: part_of UBERON:0001291 {source="MA"} ! thick ascending limb of loop of Henle
relationship: part_of UBERON:0006853 {source="MA"} ! renal cortex tubule
[Term]
id: UBERON:0006855
name: ureter muscle layer
synonym: "muscular coat of ureter" EXACT [FMA:15893]
synonym: "muscular layer of ureter" EXACT [FMA:15893]
synonym: "muscularis of ureter" EXACT [FMA:15893]
synonym: "tunica muscularis (ureter)" EXACT [FMA:TA]
synonym: "tunica muscularis ureteris" EXACT [FMA:TA]
xref: FMA:15893
xref: MA:0002654
xref: SCTID:3563003
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0000056
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0009916 {source="FMA"} ! wall of ureter
[Term]
id: UBERON:0006856
name: interrenal gland
def: "Structures in fishes homologous to the cortical tissue of the mammalian adrenal gland; they are in close proximity to or imbedded in the head kidney." [BTO:0000808, doi:10.1242/dev.00427]
comment: Editor notes: check isa - not a true gland? There are two types of interrenal cells identified (1) The noradrenaline type, which contain heterogeneous vesicles with electron-dense granules located asymmetrically within the vesicular membrane. (2) The adrenaline type, in which the vesicles are smaller and contain homogenous electron-lucent granules that are separated from the vesicular membrane by a visible -- halo http://dev.biologists.org/content/130/10/2107.full
subset: organ_slim
synonym: "interrenal" RELATED [http://dev.biologists.org/content/130/10/2107.full]
synonym: "interrenal bodies" RELATED []
synonym: "interrenal body" RELATED [BTO:0000808]
synonym: "interrenal gland" RELATED []
synonym: "interrenal tissue" RELATED []
xref: BTO:0000808
xref: GAID:1227
xref: MESH:A.13.530
xref: TAO:0001345
xref: VHOG:0001141
xref: ZFA:0001345
property_value: "homologous_to" UBERON:0001235
property_value: UBPROP:0000001 "An epithelial structure consisting of steroid producing cells interposed with chromaffin cells embedded within the head kidney. The interrenal gland is thought to be the equivalent of the mammalian adrenal cortex in zebrafish. Hsu et al. 2003.[TAO]" xsd:string
is_a: UBERON:0004177 ! hemopoietic organ
is_a: UBERON:0005058 ! hemolymphoid system gland
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0006858 ! adrenal/interrenal gland
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0006857 {source="ZFA"} ! interrenal primordium
relationship: has_developmental_contribution_from UBERON:0002342 {notes="check body vs gland", source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0007132 {source="ZFA"} ! head kidney
[Term]
id: UBERON:0006857
name: interrenal primordium
comment: Development notes: splanchnic mesoderm adjacent to urogenital ridge. Editor notes: consider ceding to TAO/ZFA - however, structure also present in cyclostomes
xref: TAO:0001346
xref: ZFA:0001346
xref: ZFIN:ZDB-ANAT-060131-24
is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure
is_a: UBERON:0001048 {source="Obol"} ! primordium
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
relationship: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006858
name: adrenal/interrenal gland
def: "This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells[GO]" [GO:0030325]
comment: Editor notes: keep this grouping class so long as it is required for GO
subset: grouping_class
subset: organ_slim
synonym: "adrenal gland - interrenal gland" EXACT [VHOG:0001141]
synonym: "adrenal gland/interrenal tissue" EXACT []
xref: VHOG:0001141
is_a: UBERON:0002368 ! endocrine gland
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005172 ! abdomen organ
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0006859
name: swim bladder bud
def: "Embryonic structure that forms from the anterior gut epithelium at the level of the second somite that then matures to form the swim bladder." [ZFIN:ZDB-PUB-090511-18, ZFIN:ZDB-PUB-100202-11]
xref: TAO:0005335
xref: ZFA:0005335
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0006860
name: swim bladder
alt_id: UBERON:0008980
def: "A thin membranous, sometimes alveolated sac in the dorsal portion of the abdominal cavity. Contains a varying mixture of gases, not identical to the composition of air. May be one, two or three chambered. May be connected to the gut by a tube, the ductus pneumaticus (then called physostomous) or unconnected (then called physoclistous). May function as one or more of:- hydrostatic organ, sound producing organ, sound receptor, respiratory organ. Found in Actinopterygii. Often lacking in bottom fishes." [http://www.briancoad.com/Dictionary/S.htm]
subset: organ_slim
synonym: "gas bladder" EXACT [http://www.briancoad.com/Dictionary/S.htm, ZFA:0000076]
xref: BTO:0001607
xref: BTO:0002148
xref: EFO:0003483
xref: SCTID:64748009
xref: TAO:0000076
xref: VHOG:0000310
xref: ZFA:0000076
xref: ZFIN:ZDB-ANAT-010921-495
property_value: "homologous_to" UBERON:0002048
property_value: UBPROP:0000001 "Cavitated compound organ that is double-chambered, located in the coelom and used to maintain buoyancy and may function as an acoustic resonator.[TAO]" xsd:string
is_a: UBERON:0000489 ! cavitated compound organ
relationship: develops_from UBERON:0006859 ! swim bladder bud
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0006861
name: diaphysis proper
def: "Subdivision of long bone which forms the part of the bone between two metaphyses." [UBERON:cjm]
comment: The MA class is placed here because we assume it means diaphysis proper, because in MA epiphysis is not part of MA:0002803
synonym: "body proper of long bone" EXACT [FMA:32688]
synonym: "long bone diaphysis" RELATED INCONSISTENT [MA:0002803]
synonym: "shaft proper of long bone" EXACT [FMA:32688]
xref: FMA:32688
xref: MA:0002803
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0004769 ! diaphysis
[Term]
id: UBERON:0006862
name: diaphysis of femur
synonym: "body of femur" EXACT [FMA:32847]
synonym: "corpus femoris" EXACT [FMA:32847, FMA:TA]
synonym: "femoral diaphysis" EXACT [FMA:32847]
synonym: "shaft of femur" EXACT [FMA:32847]
xref: FMA:32847
xref: SCTID:182048009
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004769 ! diaphysis
relationship: part_of UBERON:0000981
intersection_of: UBERON:0004769 ! diaphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur
[Term]
id: UBERON:0006863
name: proximal metaphysis of femur
xref: FMA:32878
is_a: UBERON:0004378 ! proximal metaphysis
is_a: UBERON:0006865 ! metaphysis of femur
relationship: part_of UBERON:0000981
intersection_of: UBERON:0004378 ! proximal metaphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur
[Term]
id: UBERON:0006864
name: distal metaphysis of femur
xref: FMA:32881
is_a: UBERON:0004377 ! distal metaphysis
is_a: UBERON:0006865 ! metaphysis of femur
relationship: part_of UBERON:0000981
intersection_of: UBERON:0004377 ! distal metaphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur
[Term]
id: UBERON:0006865
name: metaphysis of femur
synonym: "femoral metaphysis" EXACT [FMA:32875]
xref: FMA:32875
is_a: UBERON:0001438 ! metaphysis
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000981
intersection_of: UBERON:0001438 ! metaphysis
intersection_of: part_of UBERON:0000981 ! femur
relationship: part_of UBERON:0000981 ! femur
[Term]
id: UBERON:0006866
name: terminal part of digestive tract
xref: FBbt:00005756
xref: WBbt:0005773
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: continuous_with UBERON:0001245 ! anus
relationship: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0006867
name: anal part of perineum
def: "The anal triangle is the posterior part of the perineum. It contains the anal canal. [WP,unvetted]." [Wikipedia:Anal_triangle]
synonym: "anal region" BROAD [FMA:20347]
synonym: "anal triangle" EXACT [FMA:20347]
synonym: "regio analis" EXACT [FMA:20347, FMA:TA]
synonym: "regio analis" RELATED LATIN [Wikipedia:Anal_triangle]
xref: FMA:20347
xref: http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray408.png
xref: SCTID:243995004
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: contains UBERON:0000159 ! anal canal
relationship: part_of UBERON:0001353 ! anal region
relationship: part_of UBERON:0002356 ! perineum
[Term]
id: UBERON:0006868
name: seminal fluid secreting gland
subset: grouping_class
subset: organ_slim
xref: FBbt:00004958
xref: WBbt:0006870
is_a: UBERON:0005399 ! male reproductive gland
relationship: secretes UBERON:0006530
intersection_of: UBERON:0002530 ! gland
intersection_of: secretes UBERON:0006530 ! seminal fluid
relationship: part_of UBERON:0006947 ! male genital duct
relationship: secretes UBERON:0006530 ! seminal fluid
[Term]
id: UBERON:0006869
name: electric organ
def: "A specialized tract of tissue (as in the electric eel) in which electricity is generated." [BTO:0000376, Wikipedia:Electric_organ]
comment: todo - request go term for function assignment; todo - add CL term for electrocyte // modified muscle or nerve cells, which became specialized for producing bioelectric fields stronger than those that normal nerves or muscles produce (Albert and Crampton, 2006)
xref: BTO:0000376
xref: GAID:1210
xref: MESH:A.13.332
xref: TAO:0002037
property_value: UBPROP:0000001 "Organ that is used to produce an electric field, i.e. an electric organ discharge (EOD).[TAO]" xsd:string
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0006870
name: endostyle
def: "An endostyle is a longitudinal ciliated groove on the ventral wall of the pharynx which produces mucus to gather food particles. It is found in urochordates and cephalochordates, and in the larvae of lampreys. It aids in transporting food to the esophagus. It is also called the hypopharyngeal groove. The endostyle in larval lampreys (ammocetes) metamorphoses into the thyroid gland in adults, and is regarded as being homologous to the thyroid gland in vertebrates. However, Dumont, et al. question whether the endostyle in ammocetes is homologous with that of the urochordates and cephalochordates. Since the endostyle is found in the three branches of chordates, it is presumed to have arisen in the common ancestor of these taxa, along with a shift to internal feeding for extracting suspended food from the water." [Wikipedia:Endostyle]
comment: Dumont, et al. question whether the endostyle in ammocetes is homologous with that of the urochordates and cephalochordates[WP].
synonym: "hypopharyngeal groove" RELATED [BTO:0003173]
xref: ANISEED:1235299
xref: BTO:0003173
is_a: UBERON:0006846 ! groove
relationship: develops_into UBERON:0002046 ! thyroid gland
relationship: part_of UBERON:0000949 {source="http://webs.lander.edu/rsfox/invertebrates/ammocoetes.html"} ! endocrine system
relationship: part_of UBERON:0006562 ! pharynx
[Term]
id: UBERON:0006871
name: footplate
alt_id: UBERON:0004343
synonym: "foot disk" RELATED []
synonym: "foot plate" EXACT []
xref: EHDAA:5143
xref: EHDAA:6096
xref: EMAPA:17249
xref: ncithesaurus:Foot_Plate
is_a: UBERON:0010130 ! autopod plate
relationship: develops_into UBERON:0002387
intersection_of: UBERON:0010130 ! autopod plate
intersection_of: develops_into UBERON:0002387 ! foot
relationship: develops_from UBERON:0005418 ! hindlimb bud
relationship: develops_into UBERON:0002387 ! foot
[Term]
id: UBERON:0006872
name: handplate apical ectodermal ridge
xref: EHDAA2:0000729
xref: EMAPA:17247
is_a: UBERON:0004356 ! apical ectodermal ridge
relationship: part_of UBERON:0006875
intersection_of: UBERON:0004356 ! apical ectodermal ridge
intersection_of: part_of UBERON:0006875 ! handplate
relationship: part_of UBERON:0006875 ! handplate
[Term]
id: UBERON:0006875
name: handplate
synonym: "hand plate" EXACT []
xref: EHDAA:4194
xref: EHDAA:6242
xref: EMAPA:17245
xref: ncithesaurus:Hand_Plate
is_a: UBERON:0010130 ! autopod plate
relationship: develops_into UBERON:0002398
intersection_of: UBERON:0010130 ! autopod plate
intersection_of: develops_into UBERON:0002398 ! hand
relationship: develops_from UBERON:0005417 ! forelimb bud
relationship: develops_into UBERON:0002398 ! hand
[Term]
id: UBERON:0006876
name: vasculature of organ
synonym: "organ vasculature" EXACT [FMA:74612]
synonym: "set of blood vessels of organ" EXACT [FMA:74612]
xref: FMA:74612
is_a: UBERON:0002049 ! vasculature
relationship: part_of UBERON:0000062
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000062 ! organ
relationship: part_of UBERON:0000062 ! organ
[Term]
id: UBERON:0006877
name: vasculature of liver
comment: the EHDAA2 term and the FMA term may not be exact equivalents - check
synonym: "hepatic vasculature" EXACT [FMA:73748]
synonym: "liver vascular system" RELATED [EHDAA2:0003454]
xref: EHDAA2:0003454
xref: FMA:73748
is_a: UBERON:0002201 ! vasculature of trunk
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0006876 ! vasculature of organ
relationship: part_of UBERON:0002107
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0006878
name: decidua parietalis
def: "The part of the decidua in the pregnant human female lining the uterus." [Fast_Health_Medical_Dictionary:http://www.fasthealth.com/dictionary/]
synonym: "decidua vera" RELATED [BTO:0000334]
xref: BTO:0000334
xref: FMA:86479
xref: ncithesaurus:Decidua_Parietalis
xref: SCTID:255413006
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0002450 ! decidua
[Term]
id: UBERON:0006904
name: head mesenchyme from mesoderm
comment: Editor note: merged in 'head mesoderm' from XAO/AAO and EFO here. Partially implements UBERONREF:0000002 NC meeting scheme
subset: vertebrate_core
synonym: "cranial mesoderm" RELATED [UBERON:0005280]
synonym: "head mesenchyme derived from mesoderm" EXACT []
synonym: "head mesenchyme from head mesoderm" EXACT [EHDAA2:0001118]
synonym: "head mesenchyme from mesoderm" EXACT []
synonym: "head mesoderm" RELATED [AAO:0011051, UBERON:0005280]
synonym: "mesenchyme derived from head mesoderm" EXACT [EHDAA:1057]
synonym: "mesenchyme from head mesoderm" EXACT []
xref: AAO:0011051
xref: EFO:0003337
xref: EFO:0003603
xref: EHDAA2:0001118
xref: EHDAA:655
xref: EMAPA:16099
xref: EMAPA:16270
xref: TAO:0000998
xref: VHOG:0000185
xref: XAO:0000053
xref: ZFA:0000998
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005253 {source="ZFA"} ! head mesenchyme
relationship: develops_from UBERON:0000926
intersection_of: UBERON:0005253 ! head mesenchyme
intersection_of: develops_from UBERON:0000926 ! mesoderm
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: develops_from UBERON:0000926 {source="EHDAA2"} ! mesoderm
relationship: develops_from UBERON:0003063 {source="EHDAA2", source="XAO"} ! prechordal plate
[Term]
id: UBERON:0006905
name: mandibular process mesenchyme
synonym: "mesenchyme of mandibular process" EXACT [EMAPA:17357]
synonym: "mesenchyme of mandibular prominence" EXACT [UBERON:cjm]
xref: EHDAA2:0001062
xref: EHDAA:5861
xref: EHDAA:5873
xref: EMAPA:17357
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0005867
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0005867 ! mandibular prominence
relationship: part_of UBERON:0005867 ! mandibular prominence
[Term]
id: UBERON:0006906
name: ala of nose
def: "The lateral surface of the external nose ends below in a rounded eminence, the wing of the nose. It is elevated by the Levator labii superioris alaeque nasi muscle[WP]. the tissue comprising the lateral boundary of the nose, inferiorly, surrounding the naris[EoM]." [http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full, Wikipedia:Ala_of_nose]
synonym: "ala nasi" RELATED LATIN [Wikipedia:Ala_of_nose]
synonym: "ala nasi" RELATED [Wikipedia:Ala_of_nose]
synonym: "ala of the nose" RELATED [Wikipedia:Ala_of_nose]
synonym: "nasal ala" EXACT [FMA:59519]
synonym: "wing of nose" RELATED [Wikipedia:Ala_of_nose]
synonym: "wing of the nose" RELATED [Wikipedia:Ala_of_nose]
synonym: "wings of the nose" RELATED [Wikipedia:Ala_of_nose]
xref: FMA:59519
xref: http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png
xref: SCTID:361345006
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0004067 ! lateral nasal prominence
relationship: part_of UBERON:0000004 ! olfactory apparatus
[Term]
id: UBERON:0006907
name: slow muscle tissue
def: "The darker-colored muscle tissue of some mammals, composed of slow twitch muscle fibers." [BTO:0002317]
comment: The fast and slow skeletal muscles are different in terms of twitching speed (Fitts 1994), and they are believed to be derived from distinct myogenic precursors (Stockdale 1992)
synonym: "red muscle" RELATED [BTO:0002317]
synonym: "slow muscle" EXACT [BTO:0002317]
synonym: "slow skeletal muscle tissue" EXACT []
xref: BTO:0002317
xref: ncithesaurus:Muscle_Fibers_Slow-Twitch
is_a: UBERON:0001134 ! skeletal muscle tissue
[Term]
id: UBERON:0006908
name: fast muscle tissue
def: "The paler-colored muscle tissue of some mammals, composed of fast twitch muscle fibers." [BTO:0002318]
comment: The fast and slow skeletal muscles are different in terms of twitching speed (Fitts 1994), and they are believed to be derived from distinct myogenic precursors (Stockdale 1992)
synonym: "fast muscle" EXACT [BTO:0002318]
synonym: "fast skeletal muscle tissue" EXACT []
synonym: "white muscle" RELATED [BTO:0002318]
xref: BTO:0002318
xref: ncithesaurus:Muscle_Fibers_Fast-Twitch
is_a: UBERON:0001134 ! skeletal muscle tissue
[Term]
id: UBERON:0006909
name: lumen of gut
synonym: "digestive tract lumen" EXACT [UBERON:cjm]
synonym: "gut cavity" EXACT [BTO:0000349]
synonym: "gut lumen" EXACT [FMA:45677]
synonym: "lumen of alimentary tract" EXACT [UBERON:cjm]
synonym: "lumen of digestive tract" EXACT [UBERON:cjm]
xref: BTO:0000349
xref: FMA:45677
is_a: UBERON:0000464 ! anatomical space
relationship: surrounded_by UBERON:0001555
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: surrounded_by UBERON:0001555 ! digestive tract
relationship: surrounded_by UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0006911
name: digestive system fluid or secretion
xref: BTO:0000346
xref: MA:0002512
is_a: UBERON:0000463 ! portion of organism substance
relationship: secreted_by UBERON:0001007 ! digestive system
[Term]
id: UBERON:0006912
name: urinary bladder muscularis mucosa
synonym: "muscularis mucosa of bladder " BROAD [EMAPA:28619]
synonym: "muscularis mucosa of urinary bladder " EXACT [OBOL:automatic]
xref: EMAPA:28619
xref: MA:0002490
xref: ncithesaurus:Bladder_Muscularis_Mucosa
is_a: UBERON:0004228 ! urinary bladder smooth muscle
is_a: UBERON:0006676 ! muscularis mucosa
relationship: part_of UBERON:0001255
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001261 ! lamina propria of urinary bladder
[Term]
id: UBERON:0006913
name: lip epithelium
xref: BTO:0004468
xref: TAO:0005334
xref: ZFA:0005334
property_value: UBPROP:0000001 "The thick, high squamous-stratified epithelium that covers the lips. It contains abundant melanocytes, many mucous cells and has well differentiated taste buds.[TAO]" xsd:string
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001833
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001833 ! lip
relationship: part_of UBERON:0001833 ! lip
[Term]
id: UBERON:0006914
name: squamous epithelium
def: "Epithelium composed of flattened platelike cells." [Dorlands_Medical_Dictionary:MerckSource]
xref: BTO:0002072
xref: ncithesaurus:Squamous_Epithelium
xref: SCTID:40118003
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0006915
name: stratified squamous epithelium
def: "Multilaminar epithelium which consists of more than one layer of squamous cells only one layer of which is in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, epithelium of wall of esophagus.[FMA]" [FMA:45563]
synonym: "epithelium stratificatum squamosum" EXACT [FMA:45563]
xref: FMA:45563
xref: ncithesaurus:Stratified_Squamous_Epithelium
is_a: UBERON:0000486 ! multilaminar epithelium
is_a: UBERON:0006914 ! squamous epithelium
[Term]
id: UBERON:0006916
name: non-keratinized epithelium of tongue
xref: FMA:62130
is_a: UBERON:0006919 ! tongue squamous epithelium
[Term]
id: UBERON:0006918
name: parakeratinized epithelium of tongue
xref: FMA:74908
is_a: UBERON:0000488 ! atypical epithelium
is_a: UBERON:0003357 ! epithelium of tongue
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0006919
name: tongue squamous epithelium
comment: note this is a singleton subclass of tongue epithelium in MA
synonym: "squamous epithelium of tongue" EXACT [OBOL:automatic]
xref: MA:0002786
is_a: UBERON:0003357 ! epithelium of tongue
is_a: UBERON:0006914 ! squamous epithelium
relationship: part_of UBERON:0001723
intersection_of: UBERON:0006914 ! squamous epithelium
intersection_of: part_of UBERON:0001723 ! tongue
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0006920
name: esophagus squamous epithelium
comment: MA introduces basal and squamous subtypes of esophagus epithelium; consider adding the FMA class 'epithelium of esophagus' here, because it is classified as squamous. BTO also has a singleton subclass
synonym: "esophageal squamous epithelium" RELATED [OBOL:automatic]
synonym: "squamous epithelium of esophagus" RELATED [OBOL:automatic]
synonym: "squamous oesophageal epithelium" RELATED [MA:0001567]
xref: BTO:0003635
xref: MA:0001567
xref: ncithesaurus:Esophageal_Squamous_Epithelium
is_a: UBERON:0001976 ! epithelium of esophagus
is_a: UBERON:0006914 ! squamous epithelium
relationship: part_of UBERON:0001043
intersection_of: UBERON:0006914 ! squamous epithelium
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0006921
name: stomach squamous epithelium
xref: MA:0001611
is_a: UBERON:0000487 ! simple squamous epithelium
is_a: UBERON:0001276 ! epithelium of stomach
relationship: part_of UBERON:0000945
intersection_of: UBERON:0006914 ! squamous epithelium
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0006922
name: cervix squamous epithelium
xref: MA:0001725
xref: ncithesaurus:Cervix_Squamous_Epithelium
is_a: UBERON:0004801 ! cervix epithelium
is_a: UBERON:0006914 ! squamous epithelium
relationship: part_of UBERON:0000002
intersection_of: UBERON:0006914 ! squamous epithelium
intersection_of: part_of UBERON:0000002 ! uterine cervix
relationship: part_of UBERON:0000002 ! uterine cervix
[Term]
id: UBERON:0006923
name: vagina squamous epithelium
comment: note that this is a singleton subclass of vagina epithelium in MA
synonym: "vaginal squamous epithelium" EXACT []
xref: MA:0001731
xref: ncithesaurus:Vaginal_Squamous_Epithelium
is_a: UBERON:0001344 ! epithelium of vagina
is_a: UBERON:0006915 ! stratified squamous epithelium
relationship: part_of UBERON:0000996
intersection_of: UBERON:0006914 ! squamous epithelium
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0006924
name: stomach glandular epithelium
def: "A glandular epithelium that lines the stomach. The stomach's glandular epithelium is characterized by the presence of gastric glands." [ISBN10:0073040584]
comment: Editor notes: we follow Kardong in treating the glandular epithelium as a distinct entity, and thus as an epithelium which has glands; FMA has 'epithelium of gastric gland', which is part of the gastric gland. Consider also: stomach glandular region as a part-of parent
synonym: "epithelium of gastric gland" NARROW [FMA:63458]
xref: EMAPA:17623
xref: FMA:63458
xref: MA:0002784
is_a: UBERON:0001276 ! epithelium of stomach
is_a: UBERON:0006929 {source="FMA"} ! glandular columnar epithelium
relationship: part_of UBERON:0000945
intersection_of: UBERON:0006799 ! glandular epithelium
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0006931 ! stomach glandular region mucosa
[Term]
id: UBERON:0006925
name: digestive gland
def: "A gland, such as the liver or pancreas, that secretes into the alimentary canal substances necessary for digestion." [The_American_Heritage_Dictionary_of_the_English_Language:Fourth_Edition._2000.]
subset: organ_slim
synonym: "digestive system gland" EXACT [AAO:0000130]
xref: AAO:0000130
xref: BTO:0000345
is_a: UBERON:0002368 ! endocrine gland
relationship: part_of UBERON:0001007
intersection_of: UBERON:0002368 ! endocrine gland
intersection_of: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0006929
name: glandular columnar epithelium
def: "Simple columnar epithelium that constitutes the secretory part of a gland. Examples: epithelium of stomach, luminal epithelium of lactiferous duct.[FMA]" [FMA:64800]
xref: FMA:64800
xref: ncithesaurus:Columnar_Epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0006799 ! glandular epithelium
[Term]
id: UBERON:0006930
name: glandular cuboidal epithelium
xref: FMA:66809
is_a: UBERON:0000484 ! simple cuboidal epithelium
is_a: UBERON:0006799 ! glandular epithelium
[Term]
id: UBERON:0006931
name: stomach glandular region mucosa
comment: AO notes: MA also has 'stomach glandular region'
xref: MA:0001614
is_a: UBERON:0001199 ! mucosa of stomach
[Term]
id: UBERON:0006932
name: vestibular epithelium
synonym: "epithelium of vestibular labyrinth" EXACT [OBOL:automatic]
synonym: "inner ear vestibular component epithelium" EXACT [RETIRED_EHDAA2:0000834]
synonym: "vestibular sensory epithelium" EXACT [FMA:75606]
xref: FMA:75606
xref: MA:0002892
xref: RETIRED_EHDAA2:0000834
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006934 ! sensory epithelium
is_a: UBERON:0006937 ! inner ear epithelium
relationship: part_of UBERON:0001862
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001862 ! vestibular labyrinth
relationship: part_of UBERON:0001862 ! vestibular labyrinth
[Term]
id: UBERON:0006934
name: sensory epithelium
def: "Simple columnar epithelium made up of cells specialized to serve as sensory cells for the reception of external stimuli, as the sensory cells of the cochlea, vestibule, nasal mucosa, and tongue." [BTO:0000314]
comment: note that the definition sourced from Dorlands say 'simple columnar', but FMA says atypical
synonym: "neuroepithelium" RELATED INCONSISTENT [BTO:0000314]
xref: FMA:62410
xref: SCTID:309045006
is_a: UBERON:0000488 ! atypical epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0006935
name: crista ampullaris neuroepithelium
synonym: "ampullary crest neuroepithelium" RELATED [MA:0002870]
synonym: "epithelium of crista of ampulla of semicircular duct of membranous labyrinth" EXACT [FMA:75636]
xref: FMA:75636
xref: MA:0002870
is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium
relationship: part_of UBERON:0004721
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0004721 ! crista ampullaris
relationship: part_of UBERON:0004721 {source="MA"} ! crista ampullaris
relationship: part_of UBERON:0004721 ! crista ampullaris
[Term]
id: UBERON:0006936
name: thymus subcapsular epithelium
comment: todo - check whether this is part of the thymus or borders it
xref: MA:0000769
is_a: UBERON:0000483 ! epithelium
relationship: part_of UBERON:0002122
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002122 ! capsule of thymus
relationship: part_of UBERON:0002122 ! capsule of thymus
[Term]
id: UBERON:0006937
name: inner ear epithelium
xref: MA:0001189
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001846
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001846 ! internal ear
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0006938
name: pinna surface epithelium
xref: EHDAA2:0001470
xref: EHDAA:8983
xref: EMAPA:17592
xref: VHOG:0000632
is_a: UBERON:0000483 ! epithelium
relationship: part_of UBERON:0001757
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001757 ! pinna
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0006946
name: efferent duct
def: "The efferent ducts (or efferent ductules or ductuli efferentes) connect the rete testis with the initial section of the epididymis. The ductuli are unilaminar and composed of columnar ciliated and non-ciliated (absorptive) cells. The ciliated cells serve to stir the luminal fluids, possibly to help ensure homogeneous absorption of water from the fluid produced by the testis, which results in an increase in the concentration of luminal sperm. The epithelium is surrounded by a band of smooth muscle that helps to propel the sperm toward the epididymis." [Wikipedia:Efferent_ducts]
comment: AO notes: Check EMAPA. Taxon notes: There are two basic designs for efferent ductule structure: a) multiple entries into the epididymis, as seen in most large mammals. In humans and other large mammals, there are approximately 15-20 efferent ducts, which also occupy nearly one third of the head of the epididymis. b) single entry, as seen in most small animals such as rodents, whereby the 3-6 ductules merge into a single small ductule prior to entering the epididymis
synonym: "ductuli efferentes testis" RELATED [Wikipedia:Efferent_ducts]
synonym: "ductuli efferentes testis" RELATED LATIN [Wikipedia:Efferent_ducts]
synonym: "efferent ductule" EXACT [FMA:19081]
synonym: "efferent ductule" EXACT [Wikipedia:Efferent_ducts]
synonym: "vasa efferentia" RELATED [AAO:0010532, Wikipedia:Efferent_ducts]
xref: AAO:0010532
xref: EMAPA:18993
xref: FMA:19081
xref: http://upload.wikimedia.org/wikipedia/commons/b/b5/Hodenschema.svg
xref: MA:0000398
xref: ncithesaurus:Efferent_Ductule
property_value: UBPROP:0000001 "Any of a group ranging from one to twelve (varies in species) small seminal ducts per testis which transport sperm from the testes to the kidney.[AAO]" xsd:string
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: channels_from UBERON:0003959 ! rete testis
relationship: channels_into UBERON:0001301 ! epididymis
relationship: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0006947 {source="FMA"} ! male genital duct
[Term]
id: UBERON:0006947
name: male genital duct
alt_id: UBERON:0010140
def: "A duct or series of ducts that transports sperm from the gonad. In mammals this is from the seminiferous tubules through rete testis, vas efferentia, epididymis, vas deferens, ejeculatory duct to the urethra." [UBERON:cjm]
comment: Taxon notes: we use this as a generic grouping class for a number of taxa. AO notes: in FMA includes as parts: seminal vesicle, efferent ductule (vas efferentia), epididymis, deferent duct (vas deferens), ejaculatory duct
subset: grouping_class
synonym: "sperm duct" EXACT [ZFA:0001268]
xref: FMA:55678
xref: TAO:0001268
xref: ZFA:0001268
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: channel_for UBERON:0001968 ! semen
relationship: channels_from UBERON:0000473 ! testis
relationship: part_of UBERON:0004054 ! internal male genitalia
[Term]
id: UBERON:0006948
name: efferent duct epithelium
synonym: "epithelium of efferent ductule of testis" EXACT [FMA:19195]
xref: FMA:19195
xref: MA:0001734
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0006946
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0006946 ! efferent duct
relationship: part_of UBERON:0006946 ! efferent duct
[Term]
id: UBERON:0006949
name: cervical loop
def: "The cervical loop is the location on an enamel organ in a developing tooth where the outer enamel epithelium and the inner enamel epithelium join. The cervical loop is a histologic term indicating a specific epithelial structure at the apical side of the tooth germ, consisting of loosely aggregated stellate reticulum in the center surrounded by stratum intermedium. These tissues are enveloped by a basal layer of epithelium known on the outside of the tooth as outer enamel epithelium and on the inside as inner enamel epithelium. During root formation the inner layers of epithelium disappear and only the basal layers are left creating Hertwig's Epithelial Root Sheath (HERS). At this point it is usually referred to as HERS instead of the cervical loop to indicate the structural difference[WP]." [Wikipedia:Cervical_loop]
is_a: UBERON:0003843 ! dental epithelium
relationship: continuous_with UBERON:0006951 ! inner dental epithelium
relationship: continuous_with UBERON:0006952 ! outer dental epithelium
relationship: part_of UBERON:0005176 ! tooth enamel organ
[Term]
id: UBERON:0006950
name: stellate reticulum
alt_id: UBERON:0007441
def: "The stellate reticulum is a group of cells located in the center of the enamel organ of a developing tooth. These cells are star shaped and synthesize glycosaminoglycans. As glycosamingoglycans are produced, water is drawn in between the cells and stretch them apart. As they are moved further away from one another, the stellate reticulum maintain contact with one another through desmosomes, resulting in their unique appearance. stellate reticulum is lost after the first layer of dentin is laid down. this brings cells in inner enamel epithelium closer to blood vessels at the periphery[WP]." [Wikipedia:Stellate_reticulum]
synonym: "reticulum stellatum" RELATED LATIN [Wikipedia:Stellate_reticulum]
xref: BTO:0003910
xref: http://upload.wikimedia.org/wikipedia/commons/e/e3/Cervical-loop.png
xref: ncithesaurus:Stellate_Reticulum
is_a: UBERON:0003843 ! dental epithelium
relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ
relationship: part_of UBERON:0006949 ! cervical loop
[Term]
id: UBERON:0006951
name: inner dental epithelium
def: "Inner layer of the dental organ, composed of ameloblasts[ZFA]. The inner enamel epithelium, also known as the internal enamel epithelium, is a layer of cells located on the rim nearest the odontogenic papilla of the enamel organ in a developing tooth. This layer is first seen during the bell stage. The location of the enamel organ where the outer and inner enamel epithelium join is called the cervical loop[WP]." [Wikipedia:Inner_enamel_epithelium, ZFIN:curator]
synonym: "epithelium enameleum internum" RELATED LATIN [Wikipedia:Inner_enamel_epithelium]
synonym: "inner enamel epithelium" EXACT [ZFA:0005136]
xref: BTO:0003463
xref: http://upload.wikimedia.org/wikipedia/commons/e/e3/Cervical-loop.png
xref: ncithesaurus:Inner_Enamel_Epithelium
xref: TAO:0005136
xref: ZFA:0005136
property_value: UBPROP:0000001 "Inner layer of the dental organ, composed of ameloblasts.[TAO]" xsd:string
is_a: UBERON:0003843 {source="ZFA"} ! dental epithelium
relationship: part_of UBERON:0005176 ! tooth enamel organ
[Term]
id: UBERON:0006952
name: outer dental epithelium
def: "Outer layer of the dental organ[ZFA]. a layer of cuboidal cells located on the periphery of the enamel organ in a developing tooth. This layer is first seen during the bell stage." [Wikipedia:Outer_enamel_epithelium, ZFIN:curator]
synonym: "epithelium enameleum externum" RELATED LATIN [Wikipedia:Outer_enamel_epithelium]
synonym: "external dental epithelium" EXACT [BTO:0003462]
synonym: "external enamel epithelium" EXACT [Wikipedia:Outer_enamel_epithelium]
synonym: "outer enamel epithelium" EXACT [OBOL:automatic]
xref: BTO:0003462
xref: http://upload.wikimedia.org/wikipedia/commons/e/e3/Cervical-loop.png
xref: ncithesaurus:Outer_Enamel_Epithelium
xref: TAO:0005137
xref: ZFA:0005137
property_value: UBPROP:0000001 "Outer layer of the dental organ.[TAO]" xsd:string
is_a: UBERON:0003843 {source="ZFA"} ! dental epithelium
relationship: part_of UBERON:0005176 ! tooth enamel organ
[Term]
id: UBERON:0006953
name: ejaculatory duct epithelium
def: "The ejaculatory duct epithelium is composed of cuboidal to columnar cells between or through which project the terminal parts of the ducts of the unicellular prostate glands." [PMID:1238970]
comment: TODO: split off insect classes
xref: BTO:0002618
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000999
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000999 ! ejaculatory duct
relationship: part_of UBERON:0000999 ! ejaculatory duct
[Term]
id: UBERON:0006954
name: mammary myoepithelium
synonym: "lactiferous ductal myo-epithelium" EXACT [FMA:67798]
synonym: "myo-epithelium of lactiferous duct" EXACT [FMA:67798]
synonym: "myoepithelium of lactiferous duct" EXACT [FMA:67798]
xref: BTO:0002310
xref: FMA:67798
is_a: UBERON:0000420 ! myoepithelium
is_a: UBERON:0003244 ! epithelium of mammary gland
relationship: part_of UBERON:0001911
intersection_of: UBERON:0000420 ! myoepithelium
intersection_of: part_of UBERON:0001911 ! mammary gland
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0006955
name: uterine epithelium
synonym: "uterus epithelium" RELATED [BTO:0003082]
xref: BTO:0003082
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000995
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000995 ! uterus
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0006956
name: buccal mucosa
def: "The inner lining of the cheeks and lips." [Medical_Dictionary:http://www.medterms.com/]
xref: BTO:0003833
xref: FMA:59785
xref: ncithesaurus:Buccal_Mucosa
xref: SCTID:16811007
is_a: UBERON:0003729 ! mouth mucosa
relationship: part_of UBERON:0001567 ! cheek
relationship: part_of UBERON:0003729 ! mouth mucosa
[Term]
id: UBERON:0006957
name: submandibular gland primordium epithelium
xref: EHDAA2:0001940
xref: EHDAA:9257
xref: EMAPA:17756
is_a: UBERON:0004809 ! salivary gland epithelium
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0006298
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0006298 ! submandibular gland primordium
relationship: part_of UBERON:0006298 ! submandibular gland primordium
[Term]
id: UBERON:0006958
name: great vein of heart
def: "The Great Cardiac Vein (left coronary vein) begins at the apex of the heart and ascends along the anterior longitudinal sulcus to the base of the ventricles. It then curves to the left in the coronary sulcus, and reaching the back of the heart, opens into the left extremity of the coronary sinus. It receives tributaries from the left atrium and from both ventricles: one, the left marginal vein, is of considerable size, and ascends along the left margin of the heart." [Wikipedia:Great_cardiac_vein]
synonym: "great cardiac vein" EXACT [FMA:4707]
synonym: "vena cordis magna, vena cardiaca magna" RELATED LATIN [Wikipedia:Great_cardiac_vein]
xref: EHDAA2:0004508
xref: FMA:4707
xref: http://upload.wikimedia.org/wikipedia/commons/5/57/Gray556.png
xref: MA:0002131
xref: ncithesaurus:Great_Cardiac_Vein
xref: SCTID:277728005
is_a: UBERON:0004148 ! coronary vein
relationship: in_left_side_of UBERON:0000948 ! heart
[Term]
id: UBERON:0006959
name: mandible angular process
def: "a process which protrudes from the ventral caudal angle of the mandible, and acts as the attachment of the digastric muscle." [http://medical-dictionary.thefreedictionary.com/mandibular+angular+process]
synonym: "mandibular angle" RELATED [MA:0002873]
xref: MA:0002873
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0006960
name: ovary stroma
def: "The stroma of the ovary is a peculiar soft tissue, abundantly supplied with blood vessels, consisting for the most part of spindle-shaped cells with a small amount of ordinary connective tissue. These cells have been regarded by some anatomists as unstriped muscle cells, which, indeed, they most resemble; by others as connective-tissue cells. On the surface of the organ this tissue is much condensed, and forms a layer composed of short connective-tissue fibers, with fusiform cells between them. The stroma of the ovary may contain interstitial cells resembling those of the testis." [Wikipedia:Stroma_of_ovary_%28animal_tissue%29_of_ovary]
synonym: "interstitial tissue of ovary" EXACT [FMA:18626]
synonym: "ovary stroma" EXACT [MA:0002991]
synonym: "stroma of the ovary" EXACT [Wikipedia:Stroma_of_ovary]
synonym: "stroma ovarica" EXACT [FMA:18626]
synonym: "stroma ovarii" RELATED LATIN [Wikipedia:Stroma_of_ovary]
xref: EMAPA:28880
xref: FMA:18626
xref: MA:0002991
xref: ncithesaurus:Stroma_of_the_Ovarian_Cortex
xref: SCTID:259306002
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000992
intersection_of: UBERON:0003891 ! stroma
intersection_of: part_of UBERON:0000992 ! female gonad
relationship: part_of UBERON:0000992 ! female gonad
[Term]
id: UBERON:0006964
name: pars distalis of adenohypophysis
def: "The distal part of adenohypophysis: the part that makes up the main body of the gland." [Dorlands_Medical_Dictionary:MerckSource, Wikipedia:Pars_distalis]
subset: vertebrate_core
synonym: "anterior lobe" RELATED [MA:0000854]
synonym: "pars anterior" BROAD [EHDAA2:0001416, MA:0000854, ZFA:0001195]
synonym: "pars anterior of adenohypophysis" EXACT [FMA:74630]
synonym: "pars distalis" RELATED [MA:0000854]
synonym: "pars distalis (glandula pituitaria)" EXACT [FMA:74630, FMA:TA]
synonym: "pars distalis adenohypophyseos" RELATED [BTO:0001787]
synonym: "pars distalis adenohypophysis" EXACT [FMA:74630, FMA:TA]
synonym: "pars distalis lobi anterioris hypophyseos" RELATED [BTO:0001787]
synonym: "pars distalis of anterior lobe of pituitary gland" EXACT [FMA:74630]
synonym: "pars glandularis" RELATED [MA:0000854]
synonym: "pars glandularis of adenohypophysis" EXACT [FMA:74630]
xref: AAO:0010542
xref: BTO:0001787
xref: EHDAA2:0001416
xref: EHDAA:7532
xref: EMAPA:17515
xref: FMA:74630
xref: MA:0000854
xref: TAO:0001195
xref: VHOG:0000244
xref: ZFA:0001195
property_value: UBPROP:0000001 "Region of the adenohypophysis which produces the follicle-stimulating hormone, luteinizing hormone, prolactin, thyrotropin, and adrenocorticotropin.[AAO]" xsd:string
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0002196 {source="MA"} ! adenohypophysis
[Term]
id: UBERON:0006965
name: vascular cord
def: "The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]." [GO:0072360, ZFA:0005077]
xref: EFO:0003709
xref: TAO:0005077
xref: ZFA:0005077
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004535 ! cardiovascular system
[Term]
id: UBERON:0006966
name: heart capillary
def: "." [GO:0003248]
is_a: UBERON:0001982 ! capillary
is_a: UBERON:0003498 ! heart blood vessel
relationship: part_of UBERON:0000948
intersection_of: UBERON:0001982 ! capillary
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0006967
name: horn
def: "a pointed projection of the skin on the head of various animals, consisting of a covering of horn (keratin and other proteins) surrounding a core of living bone." [Horn_(anatomy)]
xref: GAID:1225
xref: MESH:A.13.507
property_value: RO:0002161 NCBITaxon:9606
is_a: UBERON:0006969 ! cranial appendage
[Term]
id: UBERON:0006968
name: keratin sheath of horn
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0006967 ! horn
[Term]
id: UBERON:0006969
name: cranial appendage
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0006970
name: bony core of horn
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0006967 ! horn
[Term]
id: UBERON:0006971
name: antler
def: "Antlers are the usually large, branching bony appendages on the heads of most deer species." [Wikipedia:Antler]
xref: BTO:0001684
xref: GAID:1226
xref: MESH:A.13.507.288
xref: SCTID:410034008
is_a: UBERON:0006969 ! cranial appendage
[Term]
id: UBERON:0006972
name: nephridium
def: "An exceretory tubule that usually opens to the exterior by a nephridiopore. The inner end of the tubule may be blind, ending in flame cells (protonephridium) or may open into the coelom through a ciliated funnel (metanephridium)." [Wikipedia:Nephridium]
xref: BTO:0000923
is_a: UBERON:0006555 ! excretory tube
[Term]
id: UBERON:0006973
name: protonephridium
def: "a network of dead-end tubules lacking internal openings found in the Phylums Platyhelminthes, kinorhyncha and Rotifera. The ends are called flame cells (if cilliated) or solenocytes (if flagellated); they function in osmoregulation and ionoregulation. The terminal cells are located at the blind end of the protonephridium. Each cell has one or more cilia and their beating inside the protonephridial tube creates an outward going current and hence a partial pressurization in the blind of the tube. Because of this pressurization drives waste fluids from the inside of the animal, they are pulled through small perforations in the terminal cells and into the protonephridium. The perforations in the terminal cell are large enough for small molecules to pass, but larger proteins are retained within the animal. From the bottom of the protonephridium the solutes are led through the tube, formed by the canal cells, and exits the animal from a small opening formed by the nephridiopore. Selective reabsorption of useful molecules by the canal cells occurs as the solutes pass down the tubule. Protonephridia are generally found in basal organisms such as flatworms. Protonephridia likely first arose as a way to cope with a hypotonic environment by removing excess water from the organism (osmoregulation). Their use as excretory/ionoregulatory structures likely arose secondarily." [Wikipedia:Nephridium#Metanephridia]
xref: BILA:0000126
is_a: UBERON:0006972 ! nephridium
[Term]
id: UBERON:0006974
name: metanephridium
def: "a type of excretory gland or nephridium found in many types of invertebrates such as Annelids, Arthropods and Molluscs. It typically consists of a ciliated funnel opening into the body cavity or coelom connected to a duct which may be variously glandularized, folded or expanded (vesiculate) and which typically opens to the organism's exterior. These ciliated tubules pump water carrying surplus ions, metabolic waste, toxins from food, and useless hormones out of the organism through openings known as nephrostomes. This waste is passed out of the body at the nephridiopore. The primary urine produced by filtration of blood (or a similar functioning fluid) is modified into secondary urine through selective reabsorption by the cells lining the metanephridium. In many earthworms the nephridial ducts open into the digestive tract instead, a condition known as enteronephry." [Wikipedia:Nephridium#Metanephridia]
xref: BILA:0000127
is_a: UBERON:0006972 ! nephridium
[Term]
id: UBERON:0006976
name: peptonephridium
def: "Organs opening into the buccal cavity of pharynx (supposedly modified nephridia) of invertebrates." [BTO:0004280]
subset: organ_slim
synonym: "esophageal appendage" RELATED [BTO:0004280]
synonym: "oesophageal appendage" RELATED [BTO:0004280]
xref: BTO:0004280
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: develops_from UBERON:0006972 ! nephridium
relationship: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0006983
name: anatomical point
def: "Non-material anatomical entity of zero dimension, which forms a boundary of an anatomical line or surface." [CARO:MAH]
subset: upper_level
xref: AAO:0010266
xref: AEO:0000009
xref: BILA:0000009
xref: CARO:0000009
xref: EHDAA2:0003009
xref: FMA:9658
xref: TAO:0001839
is_a: UBERON:0000466 ! immaterial anatomical entity
[Term]
id: UBERON:0006984
name: anatomical surface
def: "Non-material anatomical entity of two dimensions, that is demarcated by anatomical lines or points on the external or internal surfaces of anatomical structures." [CARO:MAH]
subset: upper_level
xref: AAO:0010270
xref: BILA:0000010
xref: CARO:0000010
xref: EHDAA2:0003192
xref: FMA:24137
xref: ID:0000000
xref: ncithesaurus:Anatomic_Surface
xref: ZFA:0005594
is_a: UBERON:0000466 ! immaterial anatomical entity
[Term]
id: UBERON:0007005
name: cardiac mesoderm
def: "the splanchnic mesoderm in the cardiogenic region where the heart develops; it gives rise to endocardial heart tubes that fuse to form the primordial cardiac tube, the heart primordium[web]. Two migratory heart primordia that move ventrally during the course of neurulation, and then fuse[XAO]." [http://www.drugs.com/dict/cardiogenic-mesoderm.html, XAO:0000235]
comment: consider FBbt:00005541
synonym: "cardiogenic mesoderm" RELATED [http://www.drugs.com/dict/cardiogenic-mesoderm.html]
synonym: "heart primordia" RELATED [XAO:0000235]
xref: AAO:0011021
xref: BILA:0000051
xref: EHDAA:385
xref: SCTID:360387000
xref: VHOG:0001641
xref: XAO:0000235
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm
relationship: induced_by UBERON:0009881 ! anterior lateral plate mesoderm
relationship: part_of UBERON:0004140 ! heart field
relationship: part_of UBERON:0009881 ! anterior lateral plate mesoderm
[Term]
id: UBERON:0007006
name: blastomere
def: "a type of cell produced by division of the egg after fertilization." [Wikipedia:Blastomere]
is_obsolete: true
[Term]
id: UBERON:0007010
name: cleaving embryo
def: "Organism at the cleavage stage." [OBOL:automatic]
xref: BILA:0000058
is_a: UBERON:0000922 ! embryo
relationship: existence_ends_with UBERON:0000107
relationship: existence_starts_with UBERON:0000107
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_ends_with UBERON:0000107 ! cleavage stage
intersection_of: existence_starts_with UBERON:0000107 ! cleavage stage
relationship: existence_ends_with UBERON:0000107 ! cleavage stage
relationship: existence_starts_with UBERON:0000107 ! cleavage stage
[Term]
id: UBERON:0007021
name: juvenile organism
synonym: "juvenile" BROAD []
xref: BILA:0000076
xref: TAO:0002047
property_value: UBPROP:0000001 "Whole organism that is not fully grown or sexually mature.[TAO]" xsd:string
is_a: UBERON:0000468 ! multi-cellular organism
relationship: existence_ends_with UBERON:0000112
relationship: existence_starts_with UBERON:0000112
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_ends_with UBERON:0000112 ! juvenile stage
intersection_of: existence_starts_with UBERON:0000112 ! juvenile stage
relationship: existence_ends_with UBERON:0000112 ! juvenile stage
relationship: existence_starts_with UBERON:0000112 ! juvenile stage
[Term]
id: UBERON:0007023
name: adult organism
synonym: "adult" BROAD []
xref: BILA:0000078
xref: FBbt:00003004
xref: galen:Adult
xref: HAO:0000087
xref: ncithesaurus:Adult
xref: TAO:0002046
property_value: UBPROP:0000001 "Whole organism that is fully grown or sexually mature.[TAO]" xsd:string
is_a: UBERON:0000468 ! multi-cellular organism
relationship: existence_ends_with UBERON:0000113
relationship: existence_starts_with UBERON:0000113
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_ends_with UBERON:0000113 ! post-juvenile adult stage
intersection_of: existence_starts_with UBERON:0000113 ! post-juvenile adult stage
relationship: existence_ends_with UBERON:0000113 ! post-juvenile adult stage
relationship: existence_starts_with UBERON:0000113 ! post-juvenile adult stage
[Term]
id: UBERON:0007026
name: primitive gut
xref: BILA:0000084
xref: ncithesaurus:Primordial_Gut
xref: SCTID:360394002
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000925 ! endoderm
relationship: develops_into UBERON:0001555 ! digestive tract
relationship: existence_starts_during UBERON:0000109 ! gastrula stage
[Term]
id: UBERON:0007029
name: surface
synonym: "skin" RELATED [BILA:0000118]
xref: AEO:0000154
xref: BILA:0000118
xref: EHDAA2:0003154
xref: galen:Surface
xref: ncithesaurus:Surface
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0007036
name: photosensory system
xref: BILA:0000140
is_a: UBERON:0001032 ! sensory system
[Term]
id: UBERON:0007037
name: mechanosensory system
xref: BILA:0000142
is_a: UBERON:0001032 ! sensory system
[Term]
id: UBERON:0007094
name: visceral muculature
xref: BILA:0000132
is_a: UBERON:0000383 ! musculature of body
[Term]
id: UBERON:0007095
name: somatic musculature
xref: BILA:0000133
is_a: UBERON:0000383 ! musculature of body
[Term]
id: UBERON:0007097
name: chordo neural hinge
def: "Portion of tissue that is posterior to the developing notochord during tail bud extension." [http://dev.biologists.org/content/136/10/1591.full, ZFA:0001082]
comment: In mouse and chick, the derivative of the NSB (with a minor contribution from the CLE), the `chordo-neural-hinge'(CNH) (Cambray and Wilson, 2007; Catala et al., 1995; Charrier et al., 1999), contains progenitors for the ventral neural tube, somites and notochord (Cambray and Wilson, 2002; McGrew et al., 2008). The CNH is continuous with the most recently formed neural tube and notochord (Fig. 2C-D′). By contrast, the tissue immediately caudal to the CNH exclusively produces somites in mouse and chick (McGrew et al., 2008).
xref: EFO:0003623
xref: TAO:0001082
xref: VHOG:0001382
xref: XAO:0000108
xref: ZFA:0001082
property_value: UBPROP:0000001 "Portion of tissue is a posterior to the developing notochord during tailbud extension.[TAO]" xsd:string
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0002533 ! tail bud
[Term]
id: UBERON:0007098
name: mandibular neural crest
def: "Cranial neural crest that migrates into the mandibular arch." [ZFA:0007064]
xref: TAO:0007064
xref: XAO:0000024
xref: ZFA:0007064
is_a: UBERON:0003099 {source="ZFA"} ! cranial neural crest
relationship: part_of UBERON:0003852 {source="ZFA"} ! rhombencephalon neural crest
[Term]
id: UBERON:0007099
name: hyoid neural crest
def: "Cranial neural crest that migrates into the hyoid arch." [ZFA:0007065]
synonym: "hyoid crest" EXACT [XAO:0000025]
xref: TAO:0007065
xref: XAO:0000025
xref: ZFA:0007065
is_a: UBERON:0003099 {source="ZFA"} ! cranial neural crest
relationship: part_of UBERON:0003852 {source="ZFA"} ! rhombencephalon neural crest
[Term]
id: UBERON:0007100
name: circulatory organ
def: "A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood[GO]." [GO:0007507]
comment: editor note: we need to find the appropriate GO process to use for the definition - 'blood circulation' may not apply to invertebrates; 'circulatory system process' is circular. Note we cannot use a part_of-based definition as this results in the iris and all vascular elements being categorized as circulatory organs. Taxon notes: note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. "The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian". Amniotes: four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis. Gene notes: Bmp, Nkx, Gata
subset: grouping_class
synonym: "adult heart" RELATED [FBbt:00003154]
synonym: "cardiac pump" EXACT []
synonym: "cardiac structure" RELATED []
synonym: "dorsal tube" NARROW [Wikipedia:Heart]
synonym: "heart" NARROW [GO:0007507]
synonym: "heart or heart like organ" EXACT []
xref: ANISEED:1235302
xref: FBbt:00003154
xref: http://www.sciencemag.org/content/313/5795/1922/F1.large.jpg
xref: TADS:0000147
property_value: "present_in_taxon" NCBITaxon:7718
is_a: UBERON:0003103 ! compound organ
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0007105
name: vitelline duct
def: "In the human embryo, the vitelline duct, also known as the omphalomesenteric duct, is a long narrow tube that joins the yolk-sac to the midgut lumen of the developing fetus. It appears at the end of the fourth week, when the yolk-sac presents the appearance of a small pear-shaped vesicle (the umbilical vesicle). The vesicle can be seen in the afterbirth as a small, somewhat oval-shaped body whose diameter varies from 1 mm to 5 mm. It is situated between the amnion and the chorion and may lie on or at a varying distance from the placenta. Generally, the duct fully obliterates (narrows and disappears) during the seventh week, but a failure of the duct to close is termed a vitelline fistula. This results in discharge of meconium from the umbilicus. About two per cent of fetuses exhibit a type of vitelline fistula characterized by persistence of the proximal part of the vitelline duct as a diverticulum protruding from the small intestine, Meckel's diverticulum, which is situated about two feet above the ileocecal junction, and may be attached by a fibrous cord to the abdominal wall at the umbilicus. Sometimes a narrowing of the lumen of the ileum is seen opposite the site of attachment of the duct." [Wikipedia:Vitelline_duct]
synonym: "embryonic yolk stalk" RELATED [Wikipedia:Vitelline_duct]
synonym: "omphalomesenteric duct" RELATED [Wikipedia:Vitelline_duct]
synonym: "omphalomesenteric duct" RELATED [MESH:A.16.254.891]
synonym: "yolk duct" RELATED [Wikipedia:Vitelline_duct]
synonym: "yolk-stalk" RELATED [Wikipedia:Vitelline_duct]
xref: EMAPA:26139
xref: GAID:1314
xref: http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray30.png
xref: MESH:A.16.254.891
xref: SCTID:280701007
xref: Wikipedia:Vitelline_duct
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0001045 ! midgut
[Term]
id: UBERON:0007106
name: chorionic villus
def: "One of the minute vascular projections of the fetal chorion that combines with maternal uterine tissue to form the placenta." [BTO:0001161, Wikipedia:Chorionic_villi]
comment: Taxon notes: The mouse and human placentas have labyrinthine and villous types of interdigitation between maternal and fetal tissues, respectively.
synonym: "chorionic villi" RELATED [MESH:A.16.254.403.473.200]
synonym: "chorionic villous" RELATED [Wikipedia:Chorionic_villi]
synonym: "chorionic villus" RELATED [GAID:1300]
synonym: "placental villi" RELATED [GAID:1300]
synonym: "placental villus" RELATED [GAID:1300]
xref: BTO:0001161
xref: EHDAA2:0004717
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray29.png
xref: MESH:A.16.254.403.473.200
xref: ncithesaurus:Chorionic_Villus
xref: SCTID:360403003
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0004027 {source="Obol"} ! chorionic plate
relationship: part_of UBERON:0003124 {source="BTO"} ! chorion
[Term]
id: UBERON:0007108
name: vernix caseosa
def: "An unctuous substance composed of sebum and desquamated epithelial cells, which covers the skin of the fetus." [MESH:A.12.200.946]
synonym: "vernix caseosa" RELATED [MESH:A.12.200.946]
xref: GAID:1174
xref: MESH:A.12.200.946
xref: ncithesaurus:Vernix_Caseosa
is_a: UBERON:0000456 ! bodily secretion
relationship: part_of UBERON:0000323 ! late embryo
[Term]
id: UBERON:0007109
name: meconium
def: "A dark greenish mass that accumulates in the bowel during fetal life and is discharged shortly after birth." [BTO:0000838]
xref: BTO:0000838
xref: ncithesaurus:Meconium
is_a: UBERON:0001988 ! feces
relationship: part_of UBERON:0000323 ! late embryo
[Term]
id: UBERON:0007111
name: douglas' pouch
def: "The rectouterine pouch (or rectouterine excavation, rectovaginal, Ehrhardt-Cole Recess or Pouch of Douglas) is the extension of the peritoneal cavity between the rectum and back wall of the uterus in the female human body. The rectouterine pouch is used in the treatment of end-stage renal failure in patients who are treated by peritoneal dialysis. The tip of the dialysis catheter is placed into the deepest point of the pouch. In women it is the deepest point of the peritoneal cavity, posterior to (behind) the uterus and anterior to (in front of) rectum. (The pouch on the other side of the uterus is the vesicouterine excavation. ) It is near the posterior fornix of the vagina. In men, the region corresponding to the rectouterine pouch is the rectovesical excavation, which lies between the urinary bladder and rectum. (There is no equivalent to the vesicouterine excavation.)" [Wikipedia:Recto-uterine_pouch]
synonym: "cavum Douglassi" RELATED LATIN [Wikipedia:Recto-uterine_pouch]
synonym: "cul de sac of douglas" RELATED [MESH:A.01.047.025.600.225]
synonym: "cul-de-sac of douglsa" RELATED [MESH:A.01.047.025.600.225]
synonym: "douglas cul-de-sac" RELATED [MESH:A.01.047.025.600.225]
synonym: "douglas pouch" RELATED [MESH:A.01.047.025.600.225]
synonym: "douglas' cul de sac" RELATED [MESH:A.01.047.025.600.225]
synonym: "douglas' cul-de-sac" RELATED [MESH:A.01.047.025.600.225]
synonym: "douglas' pouch" RELATED [MESH:A.01.047.025.600.225]
synonym: "excavatio recto-uterina" EXACT [FMA:14728]
synonym: "excavatio rectouterina" EXACT [FMA:14728, FMA:TA]
synonym: "excavatio rectouterina" RELATED LATIN [Wikipedia:Recto-uterine_pouch]
synonym: "fossa Douglasi" RELATED LATIN [Wikipedia:Recto-uterine_pouch]
synonym: "recto-uterine pouch" EXACT [FMA:14728]
synonym: "recto-uterine pouch" RELATED [Wikipedia:Recto-uterine_pouch]
synonym: "rectouterine excavation" RELATED [Wikipedia:Recto-uterine_pouch]
synonym: "rectouterine pouch" EXACT [FMA:14728, MESH:A.01.047.025.600.225]
xref: FMA:14728
xref: GAID:20
xref: http://upload.wikimedia.org/wikipedia/commons/5/51/WeiblichesBeckenMedian.gif
xref: MESH:A.01.047.025.600.225
xref: ncithesaurus:Recto-Vaginal_Pouch
xref: SCTID:181447009
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002358 ! peritoneum
[Term]
id: UBERON:0007113
name: venom
def: "Poisonous animal secretions forming fluid mixtures of many different enzymes, toxins, and other substances. These substances are produced in specialized glands and secreted through specialized delivery systems (nematocysts, spines, fangs, etc.) for disabling prey or predator." [MESH:A.12.200.935]
synonym: "venom" RELATED [MESH:A.12.200.935]
xref: BTO:0001439
xref: MESH:A.12.200.935
is_a: UBERON:0000456 ! bodily secretion
[Term]
id: UBERON:0007115
name: deciduous tooth
def: "One of the first set of teeth in the growth development of humans and many other mammals[WP]. The 20 teeth of the first dentition, which are shed and replaced by the permanent teeth, usually by the age of six years. All deciduous teeth are normally expected to erupt by the age of two and a half years[MESH]." [MESH:A.14.254.860.700, Wikipedia:Deciduous_teeth]
comment: GAT in FMA.
synonym: "dentes decidui" RELATED LATIN [Wikipedia:Deciduous_teeth]
synonym: "primary tooth" EXACT [FMA:55655]
synonym: "temporary tooth" EXACT [FMA:55655]
xref: FMA:55655
xref: GAID:1266
xref: http://upload.wikimedia.org/wikipedia/commons/9/97/Deciduous_teeth_by_David_Shankbone.jpg
xref: MESH:A.14.254.860.700
xref: ncithesaurus:Temporary_Tooth
xref: SCTID:245612004
is_a: UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0007116
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0007116 ! primary dentition
relationship: part_of UBERON:0007116 ! primary dentition
[Term]
id: UBERON:0007116
name: primary dentition
def: "The set of teeth first in order or time of development that will be replaced by permanent dentition upon their loss." [MESH:A.14.254.245]
synonym: "baby teeth" EXACT [FMA:75151]
synonym: "deciduous dentition" RELATED [GAID:1252]
synonym: "deciduous teeth" EXACT [FMA:75151]
synonym: "dentes decidui" EXACT [FMA:75151, FMA:TA]
synonym: "milk teeth" EXACT [FMA:75151]
synonym: "primary teeth" EXACT [GAID:1266]
synonym: "primary teeth" EXACT [FMA:75151]
synonym: "set of deciduous teeth" EXACT [FMA:75151]
synonym: "set of primary teeth" EXACT [FMA:75151]
synonym: "tooth of primary dentition" EXACT []
xref: FMA:75151
xref: GAID:1252
xref: MESH:A.14.254.245
is_a: UBERON:0003672 ! dentition
[Term]
id: UBERON:0007118
name: umbilicus
def: "The pit in the center of the abdominal wall marking the point where the umbilical cord entered in the fetus." [MESH:A.01.047.849]
synonym: "navel" EXACT [FMA:61584]
synonym: "umbilical part of abdomen" EXACT [FMA:61584]
synonym: "umbilical region" EXACT [FMA:61584]
xref: FMA:61584
xref: GAID:29
xref: galen:Umbilicus
xref: MESH:A.01.047.849
xref: ncithesaurus:Umbilicus
xref: SCTID:243961003
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0007119
name: neck of femur
def: "The femur neck or neck of the femur is a flattened pyramidal process of bone, connecting the femoral head with the femoral shaft, and forming with the latter a wide angle opening medialward." [Wikipedia:Femur_neck]
synonym: "collum femoris" RELATED LATIN [Wikipedia:Femur_neck]
synonym: "femoral neck" EXACT [FMA:42385]
synonym: "femoral neck" RELATED [Wikipedia:Femur_neck]
synonym: "femur neck" RELATED [Wikipedia:Femur_neck]
synonym: "neck of femur" RELATED [Wikipedia:Femur_neck]
synonym: "neck of the femur" RELATED [Wikipedia:Femur_neck]
xref: FMA:42385
xref: GAID:201
xref: galen:NeckOfFemur
xref: http://upload.wikimedia.org/wikipedia/commons/9/97/Gray243.png
xref: MESH:A.02.835.232.500.247.510
xref: ncithesaurus:Femoral_Neck
xref: SCTID:361792007
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0006863 ! proximal metaphysis of femur
[Term]
id: UBERON:0007120
name: premolar tooth
def: "The premolar teeth or bicuspids are transitional teeth located between the canine and molar teeth. In humans, there are two premolars per quadrant, making eight premolars total in the mouth. They have at least two cusps. Premolars can be considered as a 'transitional tooth' during chewing, or mastication. It has properties of both the anterior canines and posterior molars, and so food can be transferred from the canines to the premolars and finally to the molars for grinding, instead of directly from the canines to the molars. The premolars in humans are the maxillary first premolar, maxillary second premolar, mandibular first premolar, and the mandibular second premolar. There is always one large buccal cusp, especially so in the mandibular first premolar. The lower second premolar almost always presents with two lingual cusps. Premolar teeth by definition are permanent teeth distal to the canines preceded by deciduous molars. In primitive mammals there are four premolars per quadrant. The most mesial two have been lost in Catarrhines. Paleontologists refer to human premolars as Pm3 and Pm4." [Wikipedia:Premolar]
synonym: "bicuspid" RELATED [Wikipedia:Premolar]
synonym: "bicuspid teeth" RELATED [Wikipedia:Premolar]
synonym: "bicuspid tooth" RELATED [Wikipedia:Premolar]
synonym: "bicuspids" RELATED [Wikipedia:Premolar]
synonym: "biscuspid" RELATED [Wikipedia:Premolar]
synonym: "dens premolaris" RELATED [Wikipedia:Premolar]
synonym: "dentes premolares" RELATED LATIN [Wikipedia:Premolar]
synonym: "dentes premolares" RELATED [Wikipedia:Premolar]
synonym: "first bicuspid" RELATED [Wikipedia:Premolar]
synonym: "first premolar" RELATED [Wikipedia:Premolar]
synonym: "mandibular bicuspid" RELATED [Wikipedia:Premolar]
synonym: "maxillary bicuspid" RELATED [Wikipedia:Premolar]
synonym: "maxillary premolar" RELATED [Wikipedia:Premolar]
synonym: "pm3 %28dentistry%29" RELATED [Wikipedia:Premolar]
synonym: "pr%c3%a6molares" RELATED [Wikipedia:Premolar]
synonym: "praemolares" RELATED [Wikipedia:Premolar]
synonym: "premolar teeth" RELATED [Wikipedia:Premolar]
synonym: "premolar tooth" RELATED [Wikipedia:Premolar]
synonym: "premolars" RELATED [Wikipedia:Premolar]
synonym: "second bicuspid" RELATED [Wikipedia:Premolar]
synonym: "second premolar" RELATED [Wikipedia:Premolar]
synonym: "secondary premolar tooth" EXACT [FMA:55637]
xref: FMA:55637
xref: GAID:1261
xref: http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray1003.png
xref: MESH:A.14.254.860.150
xref: ncithesaurus:Bicuspid_Tooth
xref: SCTID:304572005
is_a: UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0007121
name: dermatome segment of skin
def: "A dermatome is an area of skin that is mainly supplied by a single spinal nerve. There are eight cervical nerves, twelve thoracic nerves, five lumbar nerves and five sacral nerves. Each of these nerves relays sensation (including pain) from a particular region of skin to the brain[WP]." [Wikipedia:Dermatome_(anatomy)]
synonym: "dermatome" RELATED [Wikipedia:Dermatome_(anatomy)]
synonym: "dermatomic area" RELATED [Wikipedia:Dermatome_(anatomy)]
xref: FMA:80301
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Dermatomes_and_cutaneous_nerves_-_posterior.png/230px-Dermatomes_and_cutaneous_nerves_-_posterior.png
xref: SCTID:244023005
is_a: UBERON:0000014 ! zone of skin
[Term]
id: UBERON:0007122
name: pharyngeal pouch 1
alt_id: UBERON:0005718
def: "The endoderm lines the future auditory tube (Pharyngotympanic Eustachian tube) , middle ear, mastoid antrum, and inner layer of the tympanic membrane. & origin of Mandibular nerve & Maxillary artery[WP]. The first pouch lies between the first and second arches[PMID]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#First_pouch]
comment: we use adjacency relations rather than part_of, as in EHDAA2
subset: vertebrate_core
synonym: "1st arch branchial pouch" EXACT [EHDAA2:0000013]
synonym: "1st arch branchial pouch endoderm" EXACT [EHDAA2:0000016]
synonym: "1st arch pouch endoderm" EXACT [EHDAA2:0000016]
synonym: "first arch pharyngeal pouch" EXACT [OBOL:automatic]
synonym: "first visceral pouch" EXACT [XAO:0000102]
synonym: "hyomandibular pouch" EXACT []
synonym: "pharyngeal pouches 1" EXACT PLURAL [ZFA:0001128]
synonym: "visceral pouch 1" EXACT [XAO:0000102]
xref: AAO:0011114
xref: EFO:0003631
xref: EHDAA2:0000016
xref: EMAPA:16124
xref: ncithesaurus:First_Pharyngeal_Pouch
xref: SCTID:345248006
xref: TAO:0001128
xref: VHOG:0000555
xref: VHOG:0000970
xref: XAO:0000102
xref: ZFA:0001128
property_value: UBPROP:0000001 "First of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string
is_a: UBERON:0004117 ! pharyngeal pouch
relationship: overlaps UBERON:0003066
relationship: overlaps UBERON:0004362
intersection_of: UBERON:0004117 ! pharyngeal pouch
intersection_of: overlaps UBERON:0003066 ! pharyngeal arch 2
intersection_of: overlaps UBERON:0004362 ! pharyngeal arch 1
relationship: overlaps UBERON:0003066 ! pharyngeal arch 2
relationship: overlaps UBERON:0004362 ! pharyngeal arch 1
[Term]
id: UBERON:0007123
name: pharyngeal pouch 2
alt_id: UBERON:0005715
def: "The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch]
subset: vertebrate_core
synonym: "2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060]
synonym: "2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061]
synonym: "pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130]
synonym: "second arch pharyngeal pouch" EXACT [OBOL:automatic]
synonym: "second visceral pouch" EXACT [XAO:0000247]
synonym: "visceral pouch 2" EXACT [XAO:0000247]
xref: AAO:0011115
xref: EFO:0003633
xref: EHDAA2:0000061
xref: EMAPA:16275
xref: ncithesaurus:Second_Pharyngeal_Pouch
xref: RETIRED_EHDAA2:0000060
xref: SCTID:345349000
xref: TAO:0001130
xref: VHOG:0000561
xref: VHOG:0000967
xref: XAO:0000247
xref: ZFA:0001130
property_value: UBPROP:0000001 "Second of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string
is_a: UBERON:0004117 ! pharyngeal pouch
relationship: overlaps UBERON:0003066
relationship: overlaps UBERON:0003114
intersection_of: UBERON:0004117 ! pharyngeal pouch
intersection_of: overlaps UBERON:0003066 ! pharyngeal arch 2
intersection_of: overlaps UBERON:0003114 ! pharyngeal arch 3
relationship: overlaps UBERON:0003066 ! pharyngeal arch 2
relationship: overlaps UBERON:0003114 ! pharyngeal arch 3
[Term]
id: UBERON:0007124
name: pharyngeal pouch 3
alt_id: UBERON:0005716
def: "The third pouch possesses Dorsal and Ventral wings. Derivatives of the dorsal wings include the inferior parathyroid glands, while the ventral wings fuse to form the cytoreticular cells of the thymus. The main nerve supply to the derivatives of this pouch is Cranial Nerve IX, glossopharyngeal nerve[WP]. The third pouch lies between the third and fourth arches[PMID]." [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Third_pouch]
subset: vertebrate_core
synonym: "3rd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000076]
synonym: "3rd arch branchial pouch endoderm" EXACT [EHDAA2:0000077]
synonym: "pharyngeal pouches 3" EXACT PLURAL [ZFA:0001131]
synonym: "third arch pharyngeal pouch" EXACT [OBOL:automatic]
synonym: "third visceral pouch" EXACT [XAO:0000251]
synonym: "visceral pouch 3" EXACT [XAO:0000251]
xref: AAO:0011116
xref: EFO:0003634
xref: EHDAA2:0000077
xref: EMAPA:16586
xref: ncithesaurus:Third_Pharyngeal_Pouch
xref: RETIRED_EHDAA2:0000076
xref: SCTID:345450001
xref: TAO:0001131
xref: VHOG:0000966
xref: VHOG:0001030
xref: XAO:0000251
xref: ZFA:0001131
property_value: UBPROP:0000001 "Third of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string
is_a: UBERON:0004117 ! pharyngeal pouch
relationship: overlaps UBERON:0003114
relationship: overlaps UBERON:0003115
intersection_of: UBERON:0004117 ! pharyngeal pouch
intersection_of: overlaps UBERON:0003114 ! pharyngeal arch 3
intersection_of: overlaps UBERON:0003115 ! pharyngeal arch 4
relationship: overlaps UBERON:0003114 ! pharyngeal arch 3
relationship: overlaps UBERON:0003115 ! pharyngeal arch 4
[Term]
id: UBERON:0007125
name: pharyngeal pouch 4
def: "A pouch that is situated between the 4th and 5th pharyngeal arch[Bard]. Derivatives include: superior parathyroid glands and ultimobranchial body which forms the parafollicular C-Cells of the thyroid gland. Musculature and cartilage of larynx (along with the sixth pharyngeal pouch)[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Fourth_pouch]
comment: todo - check relationships
subset: vertebrate_core
synonym: "4th arch branchial pouch" EXACT [RETIRED_EHDAA2:0000090]
synonym: "4th arch branchial pouch endoderm" EXACT [EHDAA2:0000091]
synonym: "fourth arch pharyngeal pouch" EXACT [OBOL:automatic]
synonym: "fourth pharyngeal pouch" RELATED [VHOG:0000971]
synonym: "fourth visceral pouch" EXACT [XAO:0000254]
synonym: "pharyngeal pouches 4" EXACT PLURAL [ZFA:0001134]
synonym: "visceral pouch 4" EXACT [XAO:0000254]
xref: AAO:0011117
xref: EFO:0003637
xref: EHDAA2:0000091
xref: EMAPA:16766
xref: ncithesaurus:Fourth_Pharyngeal_Pouch
xref: RETIRED_EHDAA2:0000090
xref: SCTID:362858001
xref: TAO:0001134
xref: VHOG:0000578
xref: VHOG:0000971
xref: XAO:0000254
xref: ZFA:0001134
property_value: UBPROP:0000001 "Fourth of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string
is_a: UBERON:0004117 ! pharyngeal pouch
relationship: overlaps UBERON:0003115
relationship: overlaps UBERON:0003116
intersection_of: UBERON:0004117 ! pharyngeal pouch
intersection_of: overlaps UBERON:0003115 ! pharyngeal arch 4
intersection_of: overlaps UBERON:0003116 ! pharyngeal arch 5
relationship: overlaps UBERON:0003115 ! pharyngeal arch 4
relationship: overlaps UBERON:0003116 ! pharyngeal arch 5
[Term]
id: UBERON:0007126
name: pharyngeal pouch 5
def: "Rudimentary structure, becomes part of the fourth pouch contributing to thyroid C-cells[WP]." [Wikipedia:Pharyngeal_pouch_(embryology)#Fifth_pouch]
comment: pouches 5 and 6 are hard to distinguish
subset: vertebrate_core
synonym: "5th pharyngeal pouch" RELATED [VHOG:0001206]
synonym: "5th visceral pouch" RELATED [VHOG:0001206]
synonym: "fifth pharyngeal pouch" RELATED [VHOG:0001206]
synonym: "fifth visceral pouch" EXACT [XAO:0000255]
synonym: "fifth visceral pouch" RELATED [VHOG:0001206]
synonym: "pharyngeal pouches 5" EXACT PLURAL [ZFA:0001133]
synonym: "visceral pouch 5" EXACT [XAO:0000255]
xref: AAO:0011118
xref: EFO:0003636
xref: ncithesaurus:Fifth_Pharyngeal_Pouch
xref: TAO:0001133
xref: VHOG:0001206
xref: XAO:0000255
xref: ZFA:0001133
property_value: UBPROP:0000001 "Fifth of the pharyngeal (endodermal) evaginations between the visceral arches.[AAO]" xsd:string
is_a: UBERON:0004117 ! pharyngeal pouch
[Term]
id: UBERON:0007127
name: pharyngeal pouch 6
def: "Along with the fourth pouch, contributes to the formation of the musculature and cartilage of the larynx[WP]." [Wikipedia:Pharyngeal_pouch_(embryology)#Sixth_pouch]
comment: pouches 5 and 6 are hard to distinguish
subset: vertebrate_core
synonym: "pharyngeal pouches 6" EXACT PLURAL [ZFA:0001132]
synonym: "sixth visceral pouch" EXACT [XAO:0000265]
synonym: "visceral pouch 6" EXACT [XAO:0000265]
xref: AAO:0011119
xref: EFO:0003635
xref: TAO:0001132
xref: XAO:0000265
xref: ZFA:0001132
property_value: UBPROP:0000001 "Sixth of the pharyngeal (endodermal) evaginations between the visceral arches.[AAO]" xsd:string
is_a: UBERON:0004117 ! pharyngeal pouch
[Term]
id: UBERON:0007128
name: glomeral mesenchyme
def: "Portion of tissue that consists of the precursors of the pronephric glomus or glomerulus; derived from the medial portion of the pronephric intermediate mesoderm." [ISBN:0815318960]
synonym: "corpuscle" RELATED [XAO:0000110]
synonym: "glomerulus" RELATED [XAO:0000110]
xref: XAO:0000110
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0007132
name: head kidney
def: "The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis." [doi:10.1242/dev.00427, ZFIN:ZDB-PUB-040923-1]
comment: in GO, head kidney isa pronephros. Modified the ZFA relationships - the HK is derived from the anterior part of the pronephros and persists until adulthood
subset: organ_slim
synonym: "anterior kidney" EXACT [ZFA:0000669]
synonym: "kidney marrow" EXACT [ZFA:0000669]
xref: TAO:0000669
xref: ZFA:0000669
property_value: UBPROP:0000001 "The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis. Davidson and Zon 2004.[TAO]" xsd:string
is_a: UBERON:0003103 ! compound organ
is_a: UBERON:0004177 ! hemopoietic organ
is_a: UBERON:0005172 ! abdomen organ
is_a: UBERON:0006554 ! urinary system structure
relationship: develops_from UBERON:0002120 {source="cjm"} ! pronephros
relationship: part_of UBERON:0000949 ! endocrine system
relationship: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002390 ! hematopoietic system
[Term]
id: UBERON:0007134
name: trunk ganglion
def: "Ganglion which is located in the trunk." [ZFIN:curator]
synonym: "body ganglion" EXACT [MAT:0000344]
synonym: "trunk ganglia" EXACT PLURAL [ZFA:0001573]
xref: EFO:0000901
xref: MAT:0000344
xref: MIAA:0000344
xref: TAO:0001573
xref: ZFA:0001573
is_a: UBERON:0000045 ! ganglion
relationship: part_of UBERON:0002100
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0007135
name: neural keel
def: "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section." [ZFIN:ZDB-PUB-961014-576]
synonym: "presumptive central nervous system" RELATED [ZFA:0000131]
xref: EFO:0003497
xref: TAO:0000131
xref: ZFA:0000131
xref: ZFIN:ZDB-ANAT-010921-559
property_value: UBPROP:0000001 "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0003075 ! neural plate
[Term]
id: UBERON:0007136
name: rectouterine fold
def: "These folds of the rectouterine excavation are named the sacrogenital or rectouterine folds. They contain a considerable amount of fibrous tissue and non-striped muscular fibers which are attached to the front of the sacrum and constitute the uterosacral ligaments." [Wikipedia:Recto-uterine_fold]
synonym: "fold of douglas" EXACT [FMA:16533]
synonym: "plica rectouterina" EXACT [FMA:16533, FMA:TA]
synonym: "plica rectouterina" RELATED LATIN [Wikipedia:Recto-uterine_fold]
synonym: "posterior ligament of uterus" EXACT [FMA:16533]
synonym: "recto-uterine fold" EXACT [FMA:16533]
synonym: "rectovaginal fold" EXACT [FMA:16533]
xref: FMA:16533
xref: http://upload.wikimedia.org/wikipedia/commons/b/b5/Gray1165.png
xref: SCTID:361301006
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002358 ! peritoneum
[Term]
id: UBERON:0007140
name: parietal mesothelium
def: "Mesothelium overs the body walls is called the parietal mesothelium" [http://en.wikipedia.org/wiki/Mesothelium]
xref: MA:0000566
is_a: UBERON:0001136 ! mesothelium
[Term]
id: UBERON:0007141
name: visceral mesothelium
def: "Mesothelium that covers the internal organs is called visceral mesothelium" [http://en.wikipedia.org/wiki/Mesothelium]
xref: MA:0000567
is_a: UBERON:0001136 ! mesothelium
[Term]
id: UBERON:0007142
name: left internal carotid artery
synonym: "arteria caritis interna sinistra" EXACT [FMA:4062]
xref: EMAPA:16329
xref: FMA:4062
xref: SCTID:161452006
is_a: UBERON:0001532 ! internal carotid artery
relationship: branch_of UBERON:0001536
intersection_of: UBERON:0001532 ! internal carotid artery
intersection_of: branch_of UBERON:0001536 ! left common carotid artery plus branches
relationship: branch_of UBERON:0001536 ! left common carotid artery plus branches
relationship: part_of UBERON:0001536 ! left common carotid artery plus branches
[Term]
id: UBERON:0007143
name: right internal carotid artery
synonym: "arteria carotis interna dextra" EXACT [FMA:3949]
xref: EMAPA:16330
xref: FMA:3949
xref: SCTID:161251001
is_a: UBERON:0001532 ! internal carotid artery
relationship: branch_of UBERON:0001531
intersection_of: UBERON:0001532 ! internal carotid artery
intersection_of: branch_of UBERON:0001531 ! right common carotid artery plus branches
relationship: branch_of UBERON:0001531 ! right common carotid artery plus branches
relationship: part_of UBERON:0001531 ! right common carotid artery plus branches
[Term]
id: UBERON:0007144
name: tail of embryo
synonym: "embryo tail" EXACT [FMA:85540]
xref: EMAPA:16748
xref: FMA:85540
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0007145
name: dome of diaphragm
synonym: "diaphragm dome" EXACT [FMA:13332]
xref: EMAPA:18046
xref: FMA:13332
xref: SCTID:244940004
xref: VHOG:0000933
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001103 ! diaphragm
[Term]
id: UBERON:0007146
name: posterior spinal artery
synonym: "dorsal spinal artery" EXACT [FMA:50522]
xref: EMAPA:18243
xref: FMA:50522
xref: ncithesaurus:Posterior_Spinal_Artery
xref: SCTID:181330009
is_a: UBERON:0002458 ! spinal artery
is_a: UBERON:0004573 ! systemic artery
relationship: part_of UBERON:0002458 ! spinal artery
[Term]
id: UBERON:0007147
name: lumen of midgut
synonym: "midgut lumen" EXACT [FMA:54366]
xref: EMAPA:18377
xref: FMA:54366
is_a: UBERON:0002553 ! anatomical cavity
relationship: surrounded_by UBERON:0001045
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: surrounded_by UBERON:0001045 ! midgut
relationship: surrounded_by UBERON:0001045 ! midgut
[Term]
id: UBERON:0007148
name: lumen of hindgut
synonym: "hindgut lumen" EXACT [FMA:54367]
xref: EMAPA:18396
xref: FMA:54367
is_a: UBERON:0002553 ! anatomical cavity
relationship: surrounded_by UBERON:0001046
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: surrounded_by UBERON:0001046 ! hindgut
relationship: surrounded_by UBERON:0001046 ! hindgut
[Term]
id: UBERON:0007149
name: inferior thyroid artery
def: "The inferior thyroid artery passes upward, in front of the vertebral artery and Longus colli, then turns medialward behind the carotid sheath and its contents, and also behind the sympathetic trunk, the middle cervical ganglion resting upon the vessel. Reaching the lower border of the thyroid gland it divides into two branches, which supply the postero-inferior parts of the gland, and anastomose with the superior thyroid, and with the corresponding artery of the opposite side. The recurrent nerve passes upward generally behind, but occasionally in front of, the artery. This makes it vulnerable to injury during surgery that involves ligating the inferior thyroid artery, such as excision of the lower pole of the thyroid gland." [Wikipedia:Inferior_thyroid_artery]
synonym: "arteria thyreoidea inferior" RELATED LATIN [Wikipedia:Inferior_thyroid_artery]
xref: EMAPA:18623
xref: FMA:10662
xref: http://upload.wikimedia.org/wikipedia/commons/2/28/Thyrocervical_trunk.png
xref: ncithesaurus:Inferior_Thyroid_Artery
xref: SCTID:303419004
is_a: UBERON:0004573 ! systemic artery
relationship: part_of UBERON:0003847 ! thyroid artery
[Term]
id: UBERON:0007150
name: superior thyroid artery
def: "The superior thyroid artery arises from the external carotid artery just below the level of the greater cornu of the hyoid bone and ends in the thyroid gland." [Wikipedia:Superior_thyroid_artery]
synonym: "arteria thyreoidea superior" RELATED LATIN [Wikipedia:Superior_thyroid_artery]
xref: EMAPA:18624
xref: FMA:49472
xref: http://upload.wikimedia.org/wikipedia/commons/5/5a/Plate_16_Zuckerkandl.jpg
xref: ncithesaurus:Superior_Thyroid_Artery
xref: SCTID:244218002
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: branch_of UBERON:0001070 ! external carotid artery
relationship: part_of UBERON:0003847 ! thyroid artery
[Term]
id: UBERON:0007151
name: leaflets of mitral valve
def: "Leaf of cardiac valve which has as its parts the anterior, and posterior leaflets that is attached to the chorda tendinea of left ventricle and to the frbrous ring of mitral valve.[FMA]" [FMA:7241, FMA:FMA]
synonym: "mitral valve leaflet" EXACT [FMA:7241]
synonym: "mitral valvular leaflet" EXACT [FMA:7241]
xref: EMAPA:18628
xref: FMA:7241
xref: SCTID:244353007
xref: VHOG:0000822
is_a: UBERON:0011741 ! cardiac valve leaflet
relationship: part_of UBERON:0002135
intersection_of: UBERON:0011741 ! cardiac valve leaflet
intersection_of: part_of UBERON:0002135 ! mitral valve
relationship: attaches_to UBERON:0005995 ! mitral valve anulus
relationship: part_of UBERON:0002135 ! mitral valve
[Term]
id: UBERON:0007152
name: inferior sagittal sinus
xref: EMAPA:18635
xref: FMA:50768
xref: ncithesaurus:Inferior_Sagittal_Sinus
xref: SCTID:279260007
is_a: UBERON:0003499 ! brain blood vessel
is_a: UBERON:0006615 {source="cjm"} ! venous sinus
relationship: part_of UBERON:0005486 ! venous dural sinus
[Term]
id: UBERON:0007153
name: superior epigastric artery
xref: EMAPA:18752
xref: FMA:10646
xref: SCTID:244287004
is_a: UBERON:0004573 ! systemic artery
relationship: branch_of UBERON:0002456 ! internal thoracic artery
relationship: part_of UBERON:0002456 ! internal thoracic artery
relationship: part_of UBERON:0006349 ! epigastric artery
[Term]
id: UBERON:0007154
name: inferior epigastric vein
xref: EMAPA:18760
xref: FMA:21162
xref: ncithesaurus:Deep_Epigastric_Vein
xref: SCTID:286872000
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0006356 ! epigastric vein
[Term]
id: UBERON:0007155
name: superior epigastric vein
xref: EMAPA:18761
xref: FMA:4731
xref: SCTID:286596001
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0006356 ! epigastric vein
relationship: tributary_of UBERON:0001589 {source="FMA/obol"} ! internal thoracic vein
[Term]
id: UBERON:0007156
name: inferior thyroid vein
synonym: "inferior thyroid venous tree" EXACT [FMA:4728]
synonym: "vena thyroidea inferioris" EXACT [FMA:4728]
xref: EMAPA:18763
xref: FMA:4728
xref: SCTID:303423007
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0007157
name: superior thyroid vein
xref: EMAPA:18764
xref: FMA:14323
xref: SCTID:303421009
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0007158
name: lumen of anal canal
synonym: "anal canal lumen" EXACT [FMA:17357]
xref: EMAPA:18836
xref: FMA:17357
is_a: UBERON:0002553 ! anatomical cavity
relationship: surrounded_by UBERON:0000159
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: surrounded_by UBERON:0000159 ! anal canal
relationship: surrounded_by UBERON:0000159 ! anal canal
[Term]
id: UBERON:0007159
name: lumen of colon
synonym: "colon lumen" EXACT [FMA:18374]
xref: EMAPA:18945
xref: FMA:18374
xref: SCTID:362156004
is_a: UBERON:0002553 ! anatomical cavity
relationship: surrounded_by UBERON:0001155
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: surrounded_by UBERON:0001155 ! colon
relationship: surrounded_by UBERON:0001155 ! colon
[Term]
id: UBERON:0007160
name: inferior petrosal sinus
synonym: "sinus petrosal inferior" EXACT [FMA:50770]
xref: EMAPA:19234
xref: FMA:50770
xref: SCTID:279263009
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003499 ! brain blood vessel
relationship: part_of UBERON:0005486 ! venous dural sinus
[Term]
id: UBERON:0007161
name: medial arcuate ligament
xref: EMAPA:19237
xref: FMA:58282
is_a: UBERON:0000211 ! ligament
[Term]
id: UBERON:0007162
name: lateral arcuate ligament
xref: EMAPA:19238
xref: FMA:58283
is_a: UBERON:0000211 ! ligament
[Term]
id: UBERON:0007163
name: superior meatus
def: "The superior meatus, the smallest of the three meatuses of the nose, occupies the middle third of the lateral wall of the nasal cavity. It lies between the superior nasal conchC& and middle nasal conchC&; the sphenopalatine foramen opens into it behind, and the posterior ethmoidal cells in front. The sphenoidal sinus opens into a recess, the sphenoethmoidal recess, which is placed above and behind the superior concha." [Wikipedia:Superior_nasal_meatus]
comment: todo - check FMA
synonym: "meatus nasi superior" RELATED LATIN [Wikipedia:Superior_nasal_meatus]
synonym: "superior nasal meatus" RELATED [Wikipedia:Superior_nasal_meatus]
xref: EMAPA:19276
xref: FMA:53138
xref: FMA:57480
xref: http://upload.wikimedia.org/wikipedia/commons/d/d6/Gray196.png
xref: SCTID:310213007
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0007164
name: distal radio-ulnar joint
synonym: "articulation radioulnaris distalis" EXACT [FMA:35290]
synonym: "distal radioulnar joint" EXACT [FMA:35290]
synonym: "inferior radioulnar joint" EXACT [FMA:35290]
xref: EMAPA:19316
xref: FMA:35290
xref: SCTID:182170009
is_a: UBERON:0001528 ! radio-ulnar joint
[Term]
id: UBERON:0007165
name: proximal radio-ulnar joint
synonym: "superior radioulnar joint" EXACT [FMA:38860]
xref: EMAPA:19317
xref: FMA:38860
xref: SCTID:361837005
is_a: UBERON:0001528 ! radio-ulnar joint
[Term]
id: UBERON:0007166
name: left dome of diaphragm
synonym: "left dome of diaphragm viewed radiologically" EXACT [FMA:13334]
xref: EMAPA:25047
xref: FMA:13334
xref: SCTID:244941000
is_a: UBERON:0007145 ! dome of diaphragm
[Term]
id: UBERON:0007167
name: right dome of diaphragm
synonym: "right dome of diaphragm viewed radiologically" EXACT [FMA:13333]
xref: EMAPA:25048
xref: FMA:13333
xref: SCTID:244942007
is_a: UBERON:0007145 ! dome of diaphragm
[Term]
id: UBERON:0007168
name: long head of biceps brachii
def: "The long head originates on the supraglenoid tubercle just above the shoulder joint from where its tendon passes down along the intertubercular groove of the humerus into the joint capsule of the shoulder joint. [1] When the humerus is in motion, the tendon of the long head is held firmly in place in the intertubercular groove by the greater and lesser tubercles and the overlying transverse humeral ligament. During the motion from external to internal rotation, the tendon is forced medially against the lesser tubercle and superiorly against the transverse ligament." [Wikipedia:Biceps_brachii_muscle#Origin_and_insertion]
synonym: "caput longum (musculus biceps brachii)" EXACT [FMA:37683]
xref: EMAPA:25054
xref: FMA:37683
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000043 ! tendon
relationship: part_of UBERON:0001507 ! biceps brachii
[Term]
id: UBERON:0007169
name: short head of biceps brachii
def: "Proximally (towards the body), the short head of the biceps attaches to (originates from) the coracoid process at the top of the scapula." [Wikipedia:Biceps_brachii_muscle#Origin_and_insertion]
xref: EMAPA:25055
xref: FMA:37682
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000043 ! tendon
relationship: part_of UBERON:0001507 ! biceps brachii
[Term]
id: UBERON:0007170
name: squamous part of occipital bone
def: "The squama of the occipital bone, situated above and behind the foramen magnum, is curved from above downward and from side to side." [Wikipedia:Squama_occipitalis]
synonym: "occipital squama" EXACT [FMA:52860]
synonym: "occipital squama" EXACT [Wikipedia:Squama_occipitalis]
synonym: "squama occipitalis" EXACT [Wikipedia:Squama_occipitalis]
synonym: "squama occipitalis" RELATED LATIN [Wikipedia:Squama_occipitalis]
synonym: "squama of occipital bone" EXACT [FMA:52860]
xref: EMAPA:25113
xref: FMA:52860
xref: http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray131.png
xref: SCTID:139077005
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001676 ! occipital bone
[Term]
id: UBERON:0007171
name: border of scapula
synonym: "scapular border" EXACT [FMA:23797]
xref: EMAPA:25124
xref: FMA:23797
is_a: UBERON:0006800 ! anatomical line
relationship: part_of UBERON:0001124 ! pectoral limb scapula
[Term]
id: UBERON:0007172
name: angle of scapula
synonym: "scapular angle" EXACT [FMA:23800]
xref: EMAPA:25125
xref: FMA:23800
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001124 ! pectoral limb scapula
[Term]
id: UBERON:0007173
name: lateral border of scapula
synonym: "axillary border of scapula" EXACT [FMA:23239]
synonym: "lateral border of scapula" EXACT [FMA:23239]
synonym: "margo lateralis (scapula)" EXACT [FMA:23239]
synonym: "margo lateralis scapulae" EXACT [FMA:23239, FMA:TA]
xref: EMAPA:25126
xref: FMA:23239
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001124 ! pectoral limb scapula
[Term]
id: UBERON:0007174
name: medial part of scapula
synonym: "margo medialis (scapula)" EXACT [FMA:23242]
synonym: "margo medialis scapulae" EXACT [FMA:23242, FMA:TA]
synonym: "medial border of scapula" EXACT [FMA:23242]
synonym: "vertebral border of scapula" EXACT [FMA:23242]
xref: EMAPA:25127
xref: FMA:23242
xref: SCTID:368187009
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001124 ! pectoral limb scapula
[Term]
id: UBERON:0007175
name: inferior angle of scapula
synonym: "angulus inferior (scapula)" EXACT [FMA:13315]
xref: EMAPA:25128
xref: FMA:13315
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001124 ! pectoral limb scapula
[Term]
id: UBERON:0007176
name: superior angle of scapula
synonym: "angulus superior (scapula)" EXACT [FMA:23248]
xref: EMAPA:25129
xref: FMA:23248
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001124 ! pectoral limb scapula
[Term]
id: UBERON:0007177
name: lamina propria of mucosa of colon
synonym: "colonic lamina propria" EXACT [FMA:15657]
synonym: "lamina propria of colonic mucosa" EXACT [FMA:15657]
synonym: "lamina propria of colonic mucous membrane" EXACT [FMA:15657]
xref: EMAPA:27395
xref: FMA:15657
xref: SCTID:113284008
is_a: UBERON:0011189 ! lamina propria of large intestine
relationship: part_of UBERON:0000317
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0000317 ! colonic mucosa
[Term]
id: UBERON:0007178
name: muscularis mucosa of mucosa of colon
synonym: "lamina muscularis of colonic mucosa" EXACT [FMA:15656]
synonym: "lamina muscularis of colonic mucous membrane" EXACT [FMA:15656]
xref: EMAPA:27399
xref: FMA:15656
xref: SCTID:885000
is_a: UBERON:0001239 ! muscularis mucosae of large intestine
relationship: part_of UBERON:0000317
intersection_of: UBERON:0006676 ! muscularis mucosa
intersection_of: part_of UBERON:0000317 ! colonic mucosa
relationship: part_of UBERON:0000317 ! colonic mucosa
[Term]
id: UBERON:0007179
name: basal cell layer of urothelium
synonym: "basal cell layer of uroepithelium" EXACT [FMA:84154]
xref: EMAPA:28806
xref: FMA:84154
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000365 ! urothelium
[Term]
id: UBERON:0007180
name: atretic follicle of ovary
synonym: "atretic follicle" EXACT [FMA:18697]
synonym: "folliculus atreticus (Ovarium)" EXACT [FMA:18697]
xref: EMAPA:29874
xref: FMA:18697
xref: SCTID:259073003
is_a: UBERON:0001305 ! ovarian follicle
[Term]
id: UBERON:0007181
name: serosa of infundibulum of uterine tube
synonym: "serosa of infundibulum of fallopian tube" EXACT [FMA:18324]
synonym: "serosa of infundibulum of oviduct" EXACT [FMA:18324]
xref: EMAPA:29903
xref: FMA:18324
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0005983 ! heart layer
relationship: part_of UBERON:0003984
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0003984 ! uterine tube infundibulum
relationship: part_of UBERON:0003983 ! conus arteriosus
relationship: part_of UBERON:0003984 ! uterine tube infundibulum
[Term]
id: UBERON:0007182
name: muscle layer of infundibulum of uterine tube
synonym: "muscle layer of infundibulum of fallopian tube" EXACT [FMA:18336]
synonym: "muscle layer of infundibulum of oviduct" EXACT [FMA:18336]
synonym: "muscularis of infundibulum of uterine tube" EXACT [FMA:18336]
xref: EMAPA:31264
xref: FMA:18336
is_a: UBERON:0006642 ! muscle layer of oviduct
relationship: part_of UBERON:0003984
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0003984 ! uterine tube infundibulum
relationship: part_of UBERON:0003983 ! conus arteriosus
relationship: part_of UBERON:0003984 ! uterine tube infundibulum
[Term]
id: UBERON:0007185
name: pericardio-peritoneal canal mesothelium
xref: EHDAA2:0001442
xref: EMAPA:16284
xref: VHOG:0000447
is_a: UBERON:0001136 ! mesothelium
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0006275
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0006275 ! pericardio-peritoneal canal
relationship: part_of UBERON:0006275 ! pericardio-peritoneal canal
[Term]
id: UBERON:0007186
name: pericardial visceral mesothelium
xref: EMAPA:16589
xref: FMA:19741
xref: VHOG:0000778
is_a: UBERON:0007141 ! visceral mesothelium
relationship: part_of UBERON:0002407
intersection_of: UBERON:0007141 ! visceral mesothelium
intersection_of: part_of UBERON:0002407 ! pericardium
relationship: part_of UBERON:0002407 ! pericardium
[Term]
id: UBERON:0007187
name: pericardial parietal mesothelium
xref: EMAPA:16588
xref: FMA:19742
is_a: UBERON:0007140 ! parietal mesothelium
relationship: part_of UBERON:0002407
intersection_of: UBERON:0007140 ! parietal mesothelium
intersection_of: part_of UBERON:0002407 ! pericardium
relationship: part_of UBERON:0002407 ! pericardium
[Term]
id: UBERON:0007188
name: mesothelium of serous pericardium
synonym: "mesothelium of pericardium" EXACT [FMA:18149]
synonym: "pericardial mesothelium" EXACT [FMA:18149]
synonym: "serous pericardium mesothelium" EXACT [FMA:18149]
xref: BTO:0003157
xref: EMAPA:16133
xref: FMA:18149
xref: SCTID:67300002
is_a: UBERON:0001136 ! mesothelium
relationship: part_of UBERON:0002357
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0002357 ! serous pericardium
relationship: part_of UBERON:0002357 ! serous pericardium
[Term]
id: UBERON:0007190
name: paracentral gyrus
xref: FMA:77537
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0007191
name: anterior paracentral gyrus
xref: FMA:77537
is_a: UBERON:0007190 ! paracentral gyrus
[Term]
id: UBERON:0007192
name: posterior paracentral gyrus
xref: FMA:77538
is_a: UBERON:0007190 ! paracentral gyrus
[Term]
id: UBERON:0007193
name: orbital gyrus
def: "The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus. These are named, from their position, the medial, anterior, lateral, and posterior orbital gyri. The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract; the portion medial to this is named the straight gyrus, and is continuous with the superior frontal gyrus on the medial surface." [Wikipedia:Orbital_gyri]
synonym: "gyrus orbitales" RELATED LATIN [Wikipedia:Orbital_gyri]
synonym: "orbital gyri" EXACT PLURAL [Wikipedia:Orbital_gyri]
xref: FMA:256194
xref: http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG
xref: SCTID:280372002
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0007194
name: vesicular gland
def: "The vesicular gland is part of the male reproductive system. The vesicular gland contributes fluids, energy substrates, and buffers to semen. It can be found near the Coagulating gland, which also belongs to the reproductive system." [BTO:0003717]
comment: todo - check this agaist seminal vesicle
xref: BTO:0003717
xref: MA:0000405
xref: ncithesaurus:Vesicular_Gland
is_a: UBERON:0010147 ! male accessory sex gland
[Term]
id: UBERON:0007195
name: stroma of bone marrow
def: "The stroma of the bone marrow is all tissue not directly involved in the primary function of hematopoiesis. The yellow bone marrow belongs here, and makes the majority of the bone marrow stroma, in addition to stromal cells located in the red bone marrow. Yellow bone marrow is found in the Medullary cavity. Still, the stroma is indirectly involved in hematopoiesis, since it provides the hematopoietic microenvironment that facilitates hematopoiesis by the parenchymal cells. For instance, they generate colony stimulating factors, affecting hematopoiesis." [Wikipedia:Bone_marrow#Stroma]
synonym: "bone marrow stroma" EXACT [FMA:21426]
xref: FMA:21426
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002371 ! bone marrow
[Term]
id: UBERON:0007196
name: tracheobronchial tree
def: "the structure from the trachea, bronchi, and bronchioles that forms the airways that supply air to the lungs. The lining of the tracheobronchial tree consists of ciliated columnar epithelial cells." [Wikipedia:Tracheobronchial_tree]
subset: organ_slim
xref: FMA:7393
xref: SCTID:361384001
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: has_part UBERON:0007592 {source="Wikipedia"} ! ciliated columnar epithelium
relationship: part_of UBERON:0001558 ! lower respiratory tract
[Term]
id: UBERON:0007197
name: hermaphroditic organism
def: "Multi-cellular organism that can produce both male and female gametes." [CARO:MAH]
synonym: "dioecious organism" RELATED [BILA:0000029]
synonym: "hermaphrodite" RELATED [WBbt:0007849]
xref: AAO:0010035
xref: BILA:0000029
xref: CARO:0000029
xref: HAO:0000029
xref: TADS:0000601
xref: WBbt:0007849
is_a: UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0007198
name: hermaphrodite anatomical structure
alt_id: AEO:0000177
def: "An anatomical structure present only in hermaphrodites." [JB:DEF]
synonym: "hermaphrodite-specific" RELATED [WBbt:0005758]
xref: EHDAA2:0003177
xref: WBbt:0005758
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0007197
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: part_of UBERON:0007197 ! hermaphroditic organism
relationship: part_of UBERON:0007197 ! hermaphroditic organism
[Term]
id: UBERON:0007204
name: brachiocephalic vasculature
is_a: UBERON:0002049 ! vasculature
[Term]
id: UBERON:0007213
name: mesenchyme derived from head neural crest
subset: vertebrate_core
synonym: "head mesenchyme from cranial neural crest" EXACT []
synonym: "head mesenchyme from neural crest" EXACT [EHDAA2:0000735]
xref: EFO:0003572
xref: EHDAA2:0000735
xref: EMAPA:16100
xref: EMAPA:16169
xref: EMAPA:16271
xref: EMAPA_RETIRED:16271
xref: TAO:0000787
xref: ZFA:0000787
is_a: UBERON:0005253 {source="ZFA"} ! head mesenchyme
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0003099
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0003099 ! cranial neural crest
relationship: develops_from UBERON:0003099 ! cranial neural crest
[Term]
id: UBERON:0007214
name: mesenchyme derived from trunk neural crest
subset: vertebrate_core
synonym: "trunk mesenchyme from neural crest" EXACT [EHDAA2:0002093]
xref: EHDAA2:0002093
xref: EMAPA:16182
xref: TAO:0000999
xref: ZFA:0000999
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0003083
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0003083 ! trunk neural crest
relationship: develops_from UBERON:0003083 ! trunk neural crest
[Term]
id: UBERON:0007215
name: trabecula cranii
def: "Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra." [ZFIN:curator]
comment: A paired cartilaginous element appearing in the preotic section of the head at the border between the brain and visceral structures (The Trabecula cranii: development and homology of an enigmatic vertebrate head structure - Cerny et al 2006)
synonym: "trabeculae cranii" EXACT PLURAL [ZFA:0001507]
xref: TAO:0001507
xref: ZFA:0001507
is_a: UBERON:0003932 ! cartilaginous element of chondrocranium
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0005945 ! neurocranial trabecula
[Term]
id: UBERON:0007220
name: late embryonic stage
synonym: "embryo late (growth) stage" EXACT [MIAA:0000399]
synonym: "embryo late growth stage" RELATED [BTO:0000449]
synonym: "embryo late stage" RELATED [BTO:0000449]
synonym: "fetal stage" NARROW SENSU [UBERON:cjm]
synonym: "fetus" NARROW [MIAA:0000399]
synonym: "fetus stage" NARROW SENSU [UBERON:cjm]
xref: EV:0300011
xref: EVM:2990031
xref: FBdv:00005333
xref: MIAA:0000399
xref: OGES:000023
xref: SCTID:367619004
is_a: UBERON:0000067 ! embryo stage part
relationship: has_end UBERON:0000103 ! life cycle stage boundary
relationship: part_of UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0007221
name: neonate stage
def: "Of or pertaining to the period of time immediately following birth, or to the newborn." [http://en.wiktionary.org/wiki/neonatal, Wikipedia:Infant]
synonym: "fledgling stage" NARROW SENSU [UBERON:cjm]
synonym: "hatchling" NARROW SENSU [UBERON:cjm]
synonym: "hatchling stage" NARROW SENSU [UBERON:cjm]
synonym: "infant stage" NARROW SENSU [UBERON:cjm]
synonym: "neonatal stage" EXACT [OBOL:automatic]
synonym: "nestling stage" NARROW SENSU [UBERON:cjm]
synonym: "newborn stage" RELATED [UBERON:cjm]
xref: BTO:0001762
xref: EV:0300037
xref: NIF_Organism:birnlex_695
xref: OGES:000025
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000112 ! juvenile stage
[Term]
id: UBERON:0007222
name: late adult stage
synonym: "elderly" RELATED [EV:0300123]
synonym: "elderly stage" RELATED [EV:0300123]
synonym: "geriatric" RELATED [EV:0300123]
synonym: "geriatric stage" RELATED [EV:0300123]
xref: EV:0300123
xref: ncithesaurus:Elderly
xref: NIF_Organism:birnlex_691
is_a: UBERON:0000113 ! post-juvenile adult stage
[Term]
id: UBERON:0007223
name: osseus cochlea
def: "The osseous cochlea is the bony foundation that forms the small shell arrangement for the cochlear nerve." [http://www.innerbody.com/image_nerv14/nerv175.html]
comment: todo - check this. in MA, cochlea is not part of the bony labyrinth
xref: MA:0000239
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001839 ! bony labyrinth
relationship: part_of UBERON:0001844 ! cochlea
[Term]
id: UBERON:0007224
name: medial entorhinal cortex
def: "The entorhinal cortex (EC) is an important memory center in the brain. In rodents, the EC is located at the caudal end of the temporal lobe. In primates it is located at the rostral end of the temporal lobe and stretches dorsolaterally. It is usually divided into medial and lateral regions with three bands with distinct properties and connectivity running perpendicular across the whole area." [BTO:0004347]
xref: BTO:0004346
xref: MA:0000922
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002728 ! entorhinal area
relationship: part_of UBERON:0002895 ! secondary olfactory cortex
[Term]
id: UBERON:0007225
name: lateral entorhinal cortex
def: "The entorhinal cortex (EC) is an important memory center in the brain. In rodents, the EC is located at the caudal end of the temporal lobe. In primates it is located at the rostral end of the temporal lobe and stretches dorsolaterally. It is usually divided into medial and lateral regions with three bands with distinct properties and connectivity running perpendicular across the whole area." [BTO:0004347]
synonym: "Entorhinal area, lateral part" EXACT [ABA:ENTl]
xref: ABA:ENTl
xref: BTO:0004347
xref: MA:0000911
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002728 ! entorhinal area
relationship: part_of UBERON:0002895 ! secondary olfactory cortex
[Term]
id: UBERON:0007227
name: superior vestibular nucleus
def: "The superior vestibular nucleus is the dorso-lateral part of the vestibular nucleus and receives collaterals and terminals from the ascending branches of the vestibular nerve. Its axons terminate in much the same manner as do those from the lateral nucleus." [Wikipedia:Superior_vestibular_nucleus]
synonym: "Bechterew's nucleus" RELATED [Wikipedia:Superior_vestibular_nucleus]
synonym: "nucleus of Bechterew" EXACT [FMA:54617]
synonym: "nucleus vestibularis superior" RELATED LATIN [Wikipedia:Superior_vestibular_nucleus]
xref: ABA:SUV
xref: BM:Me-VS-VSS
xref: BTO:0004372
xref: EV:0100257
xref: FMA:54617
xref: http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray761.png
xref: ncithesaurus:Superior_Vestibular_Nucleus
property_value: "spatially_disjoint_from" UBERON:0001721
property_value: "spatially_disjoint_from" UBERON:0001722
property_value: "spatially_disjoint_from" UBERON:0007230
is_a: UBERON:0007228 ! vestibular nucleus
[Term]
id: UBERON:0007228
name: vestibular nucleus
def: "The vestibular nuclei are the cranial nuclei for the vestibular nerve. [WP,unvetted]." [Wikipedia:Vestibular_nuclei]
comment: See comments for 'vestibular nuclear complex
synonym: "vestibular nucleus of acoustic nerve" EXACT [FMA:54602]
synonym: "vestibular nucleus of eighth cranial nerve" EXACT [FMA:54602]
xref: EV:0100254
xref: FMA:54602
xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray691.png
xref: ncithesaurus:Vestibular_Nucleus
xref: SCTID:362462004
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0002584 ! regional part of vestibular nuclear complex
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0002673 ! vestibular nuclear complex
[Term]
id: UBERON:0007230
name: lateral vestibular nucleus
def: "The lateral vestibular nucleus (Deitersbs nucleus) is the continuation upward and lateralward of the principal nucleus, and in it terminate many of the ascending branches of the vestibular nerve." [Wikipedia:Lateral_vestibular_nucleus]
synonym: "Deiter's nucleus" EXACT [FMA:54614]
synonym: "Deiters' nucleus" EXACT [FMA:54614]
synonym: "lateral nucleus of Deiters" EXACT [FMA:54614]
synonym: "nucleus of Deiters" EXACT [FMA:54614]
synonym: "nucleus vestibularis lateralis" RELATED LATIN [Wikipedia:Lateral_vestibular_nucleus]
xref: ABA:LAV
xref: BM:Me-VS-VSL
xref: BTO:0004370
xref: FMA:54614
xref: GAID:603
xref: http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray761.png
xref: MESH:A.08.186.211.132.810.428.600.800.800
xref: ncithesaurus:Lateral_Vestibular_Nucleus
xref: SCTID:280176007
property_value: "spatially_disjoint_from" UBERON:0001721
property_value: "spatially_disjoint_from" UBERON:0001722
property_value: "spatially_disjoint_from" UBERON:0007227
is_a: UBERON:0007228 ! vestibular nucleus
[Term]
id: UBERON:0007232
name: 2 cell stage
synonym: "NF stage 2 (2-cell)" NARROW SENSU [XAO:1000011]
synonym: "two-cell stage" EXACT [OBOL:automatic]
xref: EMAPA:16036
xref: XAO:1000011
xref: ZFS:0000002
is_a: UBERON:0000067 ! embryo stage part
relationship: directly_preceded_by UBERON:0000106 ! zygote stage
relationship: part_of UBERON:0000107 ! cleavage stage
[Term]
id: UBERON:0007233
name: 4 cell stage
synonym: "four-cell stage" EXACT [OBOL:automatic]
synonym: "NF stage 3 (4-cell)" NARROW SENSU [XAO:1000013]
xref: XAO:1000013
xref: ZFS:0000003
is_a: UBERON:0000067 ! embryo stage part
relationship: directly_preceded_by UBERON:0007232 ! 2 cell stage
relationship: part_of UBERON:0000107 ! cleavage stage
relationship: starts UBERON:0007234 ! 4-8 cell stage
[Term]
id: UBERON:0007234
name: 4-8 cell stage
synonym: "four-eight cell stage" EXACT [OBOL:automatic]
xref: EMAPA:16037
is_a: UBERON:0000067 ! embryo stage part
relationship: directly_preceded_by UBERON:0007232 ! 2 cell stage
relationship: part_of UBERON:0000107 ! cleavage stage
[Term]
id: UBERON:0007236
name: 8 cell stage
synonym: "eight-cell stage" EXACT [OBOL:automatic]
synonym: "NF stage 4 (8-cell)" NARROW SENSU [XAO:1000014]
xref: XAO:1000014
xref: ZFS:0000004
is_a: UBERON:0000067 ! embryo stage part
relationship: directly_preceded_by UBERON:0007233 ! 4 cell stage
relationship: finishes UBERON:0007234 ! 4-8 cell stage
relationship: part_of UBERON:0000107 ! cleavage stage
[Term]
id: UBERON:0007237
name: 1st arch mandibular component
comment: Editors note: relationship to Meckel's cartilage to be added
xref: EHDAA2:0000031
xref: EHDAA:583
xref: EMAPA:16382
xref: VHOG:0000510
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004362 {source="EHDAA2"} ! pharyngeal arch 1
[Term]
id: UBERON:0007238
name: 1st arch maxillary component
comment: Editors note: relationship to palatoquadrate to be added
xref: EHDAA2:0000038
xref: EHDAA:595
xref: EMAPA:16388
xref: VHOG:0000511
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004362 {source="EHDAA2"} ! pharyngeal arch 1
[Term]
id: UBERON:0007239
name: tunica media of artery
synonym: "arterial media" EXACT [EV:0100029]
synonym: "tunica media (arteriae)" EXACT [FMA:14273]
xref: EV:0100029
xref: FMA:14273
xref: ncithesaurus:Venous_System_Smooth_Muscle_Tissue
xref: SCTID:84300001
is_a: UBERON:0002111 ! artery smooth muscle tissue
is_a: UBERON:0002522 ! tunica media
relationship: part_of UBERON:0001637
intersection_of: UBERON:0002522 ! tunica media
intersection_of: part_of UBERON:0001637 ! artery
relationship: part_of UBERON:0000415 ! artery wall
relationship: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0007240
name: tunica adventitia of artery
synonym: "arterial adventitia" EXACT [EV:0100030]
synonym: "tunica externa (adventitia)(arteriae)" EXACT [FMA:14274]
xref: EV:0100030
xref: FMA:14274
xref: SCTID:113261001
is_a: UBERON:0005734 ! tunica adventitia
relationship: part_of UBERON:0001637
intersection_of: UBERON:0005734 ! tunica adventitia
intersection_of: part_of UBERON:0001637 ! artery
relationship: part_of UBERON:0000415 ! artery wall
relationship: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0007241
name: tunica adventitia of vein
synonym: "tunica externa (adventitia)(venae)" EXACT [FMA:14355]
synonym: "venous adventitia" EXACT [EV:0100034]
xref: EV:0100034
xref: FMA:14355
xref: SCTID:13202006
is_a: UBERON:0005734 ! tunica adventitia
relationship: part_of UBERON:0001638
intersection_of: UBERON:0005734 ! tunica adventitia
intersection_of: part_of UBERON:0001638 ! vein
relationship: part_of UBERON:0001638 ! vein
[Term]
id: UBERON:0007242
name: tunica intima of vein
synonym: "tunica interna (intima)(venae)" EXACT [FMA:14353]
synonym: "venous intima" EXACT [EV:0100032]
xref: EV:0100032
xref: FMA:14353
xref: SCTID:2436009
is_a: UBERON:0002523 ! tunica intima
relationship: part_of UBERON:0001638
intersection_of: UBERON:0002523 ! tunica intima
intersection_of: part_of UBERON:0001638 ! vein
relationship: part_of UBERON:0001638 ! vein
[Term]
id: UBERON:0007243
name: tunica media of vein
synonym: "tunica media (venae)" EXACT [FMA:14354]
synonym: "venous media" EXACT [EV:0100033]
xref: EV:0100033
xref: FMA:14354
xref: SCTID:42049001
is_a: UBERON:0002522 ! tunica media
is_a: UBERON:0004696 ! venous system smooth muscle
relationship: part_of UBERON:0001638
intersection_of: UBERON:0002522 ! tunica media
intersection_of: part_of UBERON:0001638 ! vein
relationship: part_of UBERON:0001638 ! vein
[Term]
id: UBERON:0007244
name: inferior olivary nucleus
def: "The inferior olivary nucleus is the largest nucleus situated in the olivary body, part of the medulla oblongata." [Wikipedia:Inferior_olivary_nucleus]
synonym: "inferior olive" RELATED [Wikipedia:Inferior_olivary_nucleus]
xref: BTO:0003844
xref: EMAPA:19241
xref: SCTID:369066005
xref: VHOG:0001380
is_a: UBERON:0002574 ! regional part of inferior olivary complex
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0002127
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0002127 ! inferior olivary complex
relationship: part_of UBERON:0002127 ! inferior olivary complex
[Term]
id: UBERON:0007245
name: nuclear complex of neuraxis
def: "Internal gray matter component which consists of an assemblage of nuclei of neuraxis. Example: cerebellar nuclear complex, Vestibular nuclear complex.[FMA]" [FMA:84059, FMA:FMA]
comment: todo - move existing complex classes currently under nucleus to be under this class
xref: FMA:84059
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0007247
name: superior olivary nucleus
synonym: "nucleus of superior olivary complex" EXACT [FMA:72246]
synonym: "superior olive" RELATED [MA:0001026]
xref: FMA:72246
xref: MA:0001026
xref: SCTID:369024009
xref: VHOG:0001381
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0002128
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0002128 ! superior olivary complex
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0007249
name: dorsal accessory inferior olivary nucleus
def: "The inferior olivary nucleus that is the smallest, and appears on transverse section as a curved lamina behind the primary olivary nucleus" [Wikipedia:Olivary_body#Olivary_nuclei]
synonym: "dorsal accessory olivary nucleus" EXACT [FMA:72593]
synonym: "inferior olivary complex, dorsal accessory olive" EXACT [FMA:72593]
synonym: "inferior olive, dorsal nucleus" EXACT [FMA:72593]
synonym: "nucleus olivaris accessorius posterior" EXACT [FMA:72593, FMA:TA]
synonym: "posterior accessory olivary nucleus" EXACT [FMA:72593]
xref: FMA:72593
xref: SCTID:369068006
is_a: UBERON:0007244 ! inferior olivary nucleus
[Term]
id: UBERON:0007250
name: lingual tonsil
def: "The lingual tonsils are rounded masses of lymphatic tissue that cover the posterior region of the tongue. They are on the dorsal surface at the base of the tongue. Their lymphatic tissue are dense and nodular, their surface is covered with stratified squamous epithelium which invaginates as a single crypt into each lingual tonsil. They are partially surrounded by connective tissue placing them in the group of Partially-Encapsulated Lymphatic Organs, tonsils, the only one of its kind. They have associated mucous glands which are drained by ducts directly into the single tonsillar crypt." [Wikipedia:Lingual_tonsils]
synonym: "lingual tonsillar tissue" EXACT [MA:0000773]
synonym: "tonsilla lingualis" RELATED LATIN [Wikipedia:Lingual_tonsils]
xref: FMA:54836
xref: http://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg
xref: MA:0000773
xref: ncithesaurus:Lingual_Tonsil
xref: SCTID:276957006
is_a: UBERON:0002372 ! tonsil
[Term]
id: UBERON:0007251
name: preoptic nucleus
xref: EV:0100226
is_a: UBERON:0006569 ! diencephalic nucleus
relationship: part_of UBERON:0001928
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0001928 ! preoptic area
relationship: part_of UBERON:0001928 ! preoptic area
[Term]
id: UBERON:0007252
name: intervertebral disk of cervical vertebra
synonym: "cervical intervertebral disc" EXACT [FMA:13895]
synonym: "intervertebral disc of cervical region" EXACT [EMAPA:19415]
xref: EMAPA:19415
xref: FMA:13895
xref: SCTID:68818006
is_a: UBERON:0001066 ! intervertebral disk
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005174 ! back organ
relationship: part_of UBERON:0006072
intersection_of: UBERON:0001066 ! intervertebral disk
intersection_of: part_of UBERON:0006072 ! cervical region of vertebral column
relationship: part_of UBERON:0006072 ! cervical region of vertebral column
[Term]
id: UBERON:0007254
name: intervertebral disk of thoracic vertebra
synonym: "intervertebral disc of thoracic region" EXACT [EMAPA:19489]
xref: EMAPA:19489
xref: FMA:10455
is_a: UBERON:0001066 ! intervertebral disk
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005174 ! back organ
is_a: UBERON:0005181 ! thoracic segment organ
relationship: part_of UBERON:0006073
intersection_of: UBERON:0001066 ! intervertebral disk
intersection_of: part_of UBERON:0006073 ! thoracic region of vertebral column
relationship: part_of UBERON:0006073 ! thoracic region of vertebral column
[Term]
id: UBERON:0007255
name: intervertebral disk of lumbar vertebra
synonym: "intervertebral disc of lumbar region" EXACT [EMAPA:19468]
xref: EMAPA:19468
xref: FMA:13894
is_a: UBERON:0001066 ! intervertebral disk
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005173 ! abdominal segment organ
is_a: UBERON:0005174 ! back organ
relationship: part_of UBERON:0006074
intersection_of: UBERON:0001066 ! intervertebral disk
intersection_of: part_of UBERON:0006074 ! lumbar region of vertebral column
relationship: part_of UBERON:0006074 ! lumbar region of vertebral column
[Term]
id: UBERON:0007257
name: intervertebral disk of sacral vertebra
synonym: "intervertebral disc of sacral region" EXACT [EMAPA:19575]
xref: EMAPA:19575
is_a: UBERON:0001066 ! intervertebral disk
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005174 ! back organ
is_a: UBERON:0005179 ! pelvis organ
relationship: part_of UBERON:0006075
intersection_of: UBERON:0001066 ! intervertebral disk
intersection_of: part_of UBERON:0006075 ! sacral region of vertebral column
relationship: part_of UBERON:0006075 ! sacral region of vertebral column
[Term]
id: UBERON:0007260
name: intervertebral disk of third cervical vertebra
synonym: "C3 intervertebral disk" EXACT [FMA:13896]
synonym: "intervertebral disk, C3-C4" EXACT [FMA:13896]
xref: EMAPA:19422
xref: FMA:13896
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra
[Term]
id: UBERON:0007261
name: intervertebral disk of fourth cervical vertebra
synonym: "intervertebral disc of fourth cervical vertebra" EXACT [FMA:13897]
synonym: "intervertebral disk, C4-C5" EXACT [FMA:13897]
xref: EMAPA:19425
xref: FMA:13897
xref: SCTID:361748005
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra
[Term]
id: UBERON:0007262
name: intervertebral disk of fifth cervical vertebra
synonym: "intervertebral disc of fifth cervical vertebra" EXACT [FMA:13898]
synonym: "intervertebral disk, C5-C6" EXACT [FMA:13898]
xref: EMAPA:19428
xref: FMA:13898
xref: SCTID:361749002
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra
[Term]
id: UBERON:0007263
name: intervertebral disk of sixth cervical vertebra
synonym: "intervertebral disk, C6-C7" EXACT [FMA:13899]
xref: EMAPA:19460
xref: FMA:13899
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra
[Term]
id: UBERON:0007264
name: intervertebral disk of seventh cervical vertebra
synonym: "intervertebral disk, C7-T1" EXACT [FMA:13900]
xref: EMAPA:19463
xref: FMA:13900
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra
[Term]
id: UBERON:0007265
name: intervertebral disk of axis
synonym: "C2 disk" EXACT [FMA:25058]
synonym: "C2 intervertebral disk" EXACT [FMA:25058]
synonym: "intervertebral disc of second cervical vertebra" EXACT [FMA:25058]
synonym: "intervertebral disk of second cervical vertebra" EXACT [FMA:25058]
synonym: "intervertebral disk, C2-C3" EXACT [FMA:25058]
synonym: "second cervical intervertebral disk" EXACT [FMA:25058]
xref: EMAPA:19419
xref: FMA:25058
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra
[Term]
id: UBERON:0007266
name: intervertebral disk of atlas
synonym: "C1 disk" EXACT []
synonym: "C1 intervertebral disk" EXACT []
synonym: "first cervical intervertebral disk" EXACT []
synonym: "intervertebral disc of first cervical vertebra" EXACT []
synonym: "intervertebral disk of first cervical vertebra" EXACT []
synonym: "intervertebral disk, C1-C2" EXACT []
xref: EMAPA:19416
xref: FMA:25058
is_a: UBERON:0007252 ! intervertebral disk of cervical vertebra
[Term]
id: UBERON:0007267
name: trachea pre-cartilage rings
synonym: "cartilaginous ring of trachea " EXACT [EMAPA:18699]
xref: EHDAA2:0002070
xref: EHDAA:7082
xref: EMAPA:18699
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0009505 ! associated mesenchyme of trachea
relationship: part_of UBERON:0003126
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0003126 ! trachea
relationship: develops_from UBERON:0009505 {source="EHDAA2"} ! associated mesenchyme of trachea
relationship: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0007268
name: upper esophageal sphincter
def: "The upper esophageal sphincter (UES) (also called the Pharyngoesophageal sphincter) refers to the superior portion of the esophagus. Unlike the lower esophageal sphincter, it consists of striated muscle and is under conscious control. The primary muscle of the UES is the cricopharyngeus portion of the inferior pharyngeal constrictor. During swallowing the upper esophageal sphincter opens so the bolus can pass into the esophagus. A secondary role of the UES is to reduce backflow from the esophagus into the pharynx." [Wikipedia:Upper_esophageal_sphincter]
synonym: "upper oesophageal sphincter" EXACT [Wikipedia:Upper_esophageal_sphincter]
xref: http://upload.wikimedia.org/wikipedia/commons/2/22/Musculusconstrictorpharyngisinferior.png
xref: ncithesaurus:Upper_Esophageal_Sphincter
xref: Wikipedia:Upper_esophageal_sphincter
is_a: UBERON:0007652 ! esophageal sphincter
relationship: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0007269
name: pectoral appendage musculature
synonym: "pectoral fin musculature" NARROW SENSU [ZFA:0000563]
xref: EFO:0003540
xref: TAO:0000563
xref: ZFA:0000563
is_a: UBERON:0007271 ! limb/fin musculature
relationship: part_of UBERON:0004710
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0004710 ! pectoral appendage
[Term]
id: UBERON:0007270
name: pelvic appendage musculature
synonym: "pelvic fin musculature" NARROW SENSU [ZFA:0000258]
xref: TAO:0000258
xref: ZFA:0000258
property_value: UBPROP:0000001 "Musculature that is part of the pelvic fin.[TAO]" xsd:string
is_a: UBERON:0007271 ! limb/fin musculature
relationship: part_of UBERON:0004709
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0004709 ! pelvic appendage
relationship: part_of UBERON:0004709 ! pelvic appendage
[Term]
id: UBERON:0007271
name: limb/fin musculature
synonym: "fin musculature" NARROW SENSU [ZFA:0000207]
xref: TAO:0000207
xref: ZFA:0000207
is_a: UBERON:0001015 ! musculature
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0004708
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0004708 ! limb/fin
relationship: part_of UBERON:0004708 ! limb/fin
[Term]
id: UBERON:0007272
name: pectoral appendage skeleton
def: "Skeletal subdivision consisting of the anterior appendicular limb skeleton, excluding the pectoral girdle." [VSAO:0005000, VSAO:NI]
synonym: "cheiropterygium" RELATED [VSAO:0005000, VSAO:NI]
xref: VSAO:0005000
property_value: "has_no_connections_with" UBERON:0007273
is_a: UBERON:0011582 ! skeleton of limb/fin
relationship: subdivision_of UBERON:0004710
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0004710 {source="VSAO"} ! pectoral appendage
relationship: subdivision_of UBERON:0004710 ! pectoral appendage
[Term]
id: UBERON:0007273
name: pelvic appendage skeleton
def: "The collection of all skeletal elements in a pelvic appendage region." [UBERON:cjm]
is_a: UBERON:0011582 ! skeleton of limb/fin
relationship: subdivision_of UBERON:0004709
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0004709 ! pelvic appendage
relationship: part_of UBERON:0004709 {source="VSAO"} ! pelvic appendage
relationship: subdivision_of UBERON:0004709 ! pelvic appendage
[Term]
id: UBERON:0007274
name: crista of ampulla of anterior semicircular duct of membranous laybrinth
comment: todo - unvetted
subset: vertebrate_core
synonym: "anterior crista ampullaris" EXACT [ZFA:0000619]
synonym: "anterior cristae" EXACT PLURAL [ZFA:0000619]
synonym: "anterior semicircular canal sensory patch" EXACT [ZFA:0000619]
synonym: "anterior semicircular canal sensory patches" EXACT PLURAL [ZFA:0000619]
synonym: "rostral crista" EXACT [ZFA:0000619]
xref: FMA:75610
xref: TAO:0000619
xref: XAO:0004137
xref: ZFA:0000619
property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string
is_a: UBERON:0003238 ! epithelium of superior semicircular canal
is_a: UBERON:0006935 ! crista ampullaris neuroepithelium
relationship: part_of UBERON:0001857
intersection_of: UBERON:0006935 ! crista ampullaris neuroepithelium
intersection_of: part_of UBERON:0001857 ! anterior semicircular duct
relationship: part_of UBERON:0001857 ! anterior semicircular duct
[Term]
id: UBERON:0007275
name: crista of ampulla of posterior semicircular duct of membranous laybrinth
comment: todo - unvetted
subset: vertebrate_core
synonym: "caudal crista" EXACT [ZFA:0000566]
synonym: "posterior crista ampullaris" EXACT [ZFA:0000566]
synonym: "posterior cristae" EXACT PLURAL [ZFA:0000566]
synonym: "posterior semicircular canal sensory patch" EXACT [ZFA:0000566]
synonym: "posterior semicircular canal sensory patches" EXACT PLURAL [ZFA:0000566]
xref: FMA:75611
xref: TAO:0000566
xref: XAO:0004133
xref: ZFA:0000566
property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string
is_a: UBERON:0003239 ! epithelium of posterior semicircular canal
is_a: UBERON:0006935 ! crista ampullaris neuroepithelium
relationship: part_of UBERON:0001858
intersection_of: UBERON:0006935 ! crista ampullaris neuroepithelium
intersection_of: part_of UBERON:0001858 ! posterior semicircular duct
relationship: part_of UBERON:0001858 ! posterior semicircular duct
[Term]
id: UBERON:0007276
name: crista of ampulla of lateral semicircular duct of membranous laybrinth
comment: todo - unvetted
subset: vertebrate_core
synonym: "lateral crista ampullaris" EXACT [ZFA:0000166]
synonym: "lateral cristae" EXACT PLURAL [ZFA:0000166]
synonym: "lateral semicircular canal sensory patch" EXACT [ZFA:0000166]
synonym: "lateral semicircular canal sensory patches" EXACT PLURAL [ZFA:0000166]
xref: FMA:75612
xref: TAO:0000166
xref: ZFA:0000166
property_value: UBPROP:0000001 "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)[TAO]" xsd:string
is_a: UBERON:0003240 ! epithelium of lateral semicircular canal
is_a: UBERON:0006935 ! crista ampullaris neuroepithelium
relationship: part_of UBERON:0001859
intersection_of: UBERON:0006935 ! crista ampullaris neuroepithelium
intersection_of: part_of UBERON:0001859 ! lateral semicircular duct
relationship: part_of UBERON:0001859 ! lateral semicircular duct
[Term]
id: UBERON:0007277
name: presumptive hindbrain
xref: EFO:0003440
xref: TAO:0000569
xref: ZFA:0000569
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0002028
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0002028 ! hindbrain
relationship: develops_into UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0007278
name: presumptive sinus venosus
def: "Portion of tissue that is part of the heart tube and will become the sinus venosus." [ZFA:0001722]
xref: TAO:0002234
xref: ZFA:0001722
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0002063
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0002063 ! sinus venosus
relationship: develops_into UBERON:0002063 ! sinus venosus
relationship: part_of UBERON:0004141 {source="ZFA"} ! heart tube
[Term]
id: UBERON:0007279
name: presumptive atrioventricular canal
xref: TAO:0002227
xref: ZFA:0001723
property_value: UBPROP:0000001 "Portion of tissue that is part of the heart tube and will become the atrioventricular canal.[TAO]" xsd:string
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0002087
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0002087 ! atrioventricular canal
relationship: develops_into UBERON:0002087 ! atrioventricular canal
[Term]
id: UBERON:0007280
name: presumptive endocardium
xref: TAO:0002233
xref: ZFA:0001724
property_value: UBPROP:0000001 "Portion of tissue that is part of the heart tube and will become the endocardium.[TAO]" xsd:string
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0002165
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0002165 ! endocardium
relationship: develops_into UBERON:0002165 ! endocardium
[Term]
id: UBERON:0007281
name: presumptive midbrain hindbrain boundary
synonym: "presumptive MHB" EXACT [UBERON:cjm]
xref: EFO:0003446
xref: TAO:0001187
xref: XAO:0004086
xref: ZFA:0001187
is_a: UBERON:0009774 ! embryonic midbrain hindbrain boundary
relationship: part_of UBERON:0002346
intersection_of: UBERON:0009774 ! embryonic midbrain hindbrain boundary
intersection_of: part_of UBERON:0002346 ! neurectoderm
relationship: part_of UBERON:0002346 ! neurectoderm
[Term]
id: UBERON:0007282
name: presumptive segmental plate
xref: EFO:0003421
xref: TAO:0000053
xref: ZFA:0000053
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0003059
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0003059 ! presomitic mesoderm
relationship: develops_from UBERON:0009618 {consistent_with="UBERONREF:0000002", source="EDHAA2"} ! trunk paraxial mesoderm
relationship: develops_into UBERON:0003059 ! presomitic mesoderm
[Term]
id: UBERON:0007283
name: presumptive shield
xref: EFO:0003444
xref: TAO:0001121
xref: ZFA:0001121
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0003062
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0003062 ! primitive knot
relationship: develops_into UBERON:0003062 ! primitive knot
[Term]
id: UBERON:0007284
name: presumptive neural plate
xref: EFO:0003424
xref: TAO:0000063
xref: ZFA:0000063
property_value: UBPROP:0000001 "Region of the gastrula which gives rise to the neural plate.[TAO]" xsd:string
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0003075
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0003075 ! neural plate
relationship: develops_into UBERON:0003075 ! neural plate
[Term]
id: UBERON:0007285
name: presumptive paraxial mesoderm
xref: EFO:0003443
xref: TAO:0000591
xref: XAO:0004134
xref: ZFA:0000591
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0003077
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0003077 ! paraxial mesoderm
relationship: develops_into UBERON:0003077 ! paraxial mesoderm
[Term]
id: UBERON:0007286
name: presumptive floor plate
xref: EFO:0003454
xref: TAO:0001218
xref: ZFA:0001218
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0003079
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0003079 ! floor plate
relationship: develops_into UBERON:0003079 ! floor plate
[Term]
id: UBERON:0007287
name: presumptive bulbus arteriosus
xref: TAO:0002230
xref: ZFA:0001712
property_value: UBPROP:0000001 "Portion of tissue that is part of the heart tube and will become the bulbus arteriosus.[TAO]" xsd:string
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0004152
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0004152 ! bulbus arteriosus
relationship: develops_into UBERON:0004152 ! bulbus arteriosus
[Term]
id: UBERON:0007288
name: presumptive forebrain midbrain boundary
xref: EFO:0003463
xref: TAO:0001368
xref: ZFA:0001368
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0005075
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0005075 ! forebrain-midbrain boundary
relationship: develops_into UBERON:0005075 ! forebrain-midbrain boundary
[Term]
id: UBERON:0007289
name: presumptive rhombomere 1
xref: TAO:0001207
xref: ZFA:0001207
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0005499
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0005499 ! rhombomere 1
relationship: develops_into UBERON:0005499 ! rhombomere 1
[Term]
id: UBERON:0007290
name: presumptive rhombomere 3
xref: EFO:0003451
xref: TAO:0001213
xref: ZFA:0001213
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0005507
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0005507 ! rhombomere 3
relationship: develops_into UBERON:0005507 ! rhombomere 3
[Term]
id: UBERON:0007291
name: presumptive rhombomere 4
xref: EFO:0003450
xref: TAO:0001212
xref: ZFA:0001212
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0005511
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0005511 ! rhombomere 4
relationship: develops_into UBERON:0005511 ! rhombomere 4
[Term]
id: UBERON:0007292
name: presumptive rhombomere 5
xref: EFO:0003449
xref: TAO:0001211
xref: ZFA:0001211
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0005515
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0005515 ! rhombomere 5
relationship: develops_into UBERON:0005515 ! rhombomere 5
[Term]
id: UBERON:0007293
name: presumptive rhombomere 6
xref: EFO:0003448
xref: TAO:0001210
xref: ZFA:0001210
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0005519
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0005519 ! rhombomere 6
relationship: develops_into UBERON:0005519 ! rhombomere 6
[Term]
id: UBERON:0007294
name: presumptive rhombomere 7
xref: EFO:0003447
xref: TAO:0001209
xref: ZFA:0001209
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0005523
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0005523 ! rhombomere 7
relationship: develops_into UBERON:0005523 ! rhombomere 7
[Term]
id: UBERON:0007295
name: presumptive rhombomere 8
xref: EFO:0003452
xref: TAO:0001214
xref: ZFA:0001214
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0005527
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0005527 ! rhombomere 8
relationship: develops_into UBERON:0005527 ! rhombomere 8
[Term]
id: UBERON:0007296
name: presumptive rhombomere 2
xref: TAO:0001208
xref: ZFA:0001208
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0005569
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0005569 ! rhombomere 2
relationship: develops_into UBERON:0005569 ! rhombomere 2
[Term]
id: UBERON:0007297
name: presumptive pronephric mesoderm
synonym: "nephron primordium" EXACT [ZFA:0001070]
xref: EFO:0003619
xref: TAO:0001070
xref: ZFA:0001070
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0005721
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0005721 ! pronephric mesoderm
relationship: develops_into UBERON:0005721 ! pronephric mesoderm
[Term]
id: UBERON:0007298
name: pronephric proximal convoluted tubule
xref: TAO:0002238
xref: ZFA:0001620
is_a: UBERON:0001287 ! proximal convoluted tubule
is_a: UBERON:0006173 ! pronephric proximal tubule
relationship: part_of UBERON:0002120
intersection_of: UBERON:0001287 ! proximal convoluted tubule
intersection_of: part_of UBERON:0002120 ! pronephros
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0007299
name: choroid plexus of tectal ventricle
synonym: "choroid plexus tectal ventricle" EXACT [ZFA:0001445]
xref: TAO:0001445
xref: ZFA:0001445
is_a: UBERON:0001886 ! choroid plexus
relationship: part_of UBERON:0002289
intersection_of: UBERON:0001886 ! choroid plexus
intersection_of: part_of UBERON:0002289 ! cerebral aqueduct
relationship: part_of UBERON:0002289 ! cerebral aqueduct
[Term]
id: UBERON:0007300
name: pectoral appendage blood vessel
synonym: "pectoral fin blood vessel" NARROW SENSU [ZFA:0005301]
xref: TAO:0005301
xref: ZFA:0005301
is_a: UBERON:0007301 ! limb/fin blood vessel
relationship: part_of UBERON:0004710
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0004710 ! pectoral appendage
[Term]
id: UBERON:0007301
name: limb/fin blood vessel
synonym: "fin blood vessel" NARROW SENSU [ZFA:0005299]
xref: TAO:0005299
xref: ZFA:0005299
is_a: UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0004708
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0004708 ! limb/fin
relationship: part_of UBERON:0004708 ! limb/fin
[Term]
id: UBERON:0007302
name: pectoral appendage vasculature
synonym: "pectoral fin vasculature" NARROW SENSU [ZFA:0005096]
xref: TAO:0005096
xref: ZFA:0005096
is_a: UBERON:0007304 ! limb/fin vasculature
relationship: part_of UBERON:0004710
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0004710 ! pectoral appendage
[Term]
id: UBERON:0007303
name: pharyngeal vasculature
synonym: "branchial vasculature" EXACT [ZFA:0005003]
xref: TAO:0005003
xref: ZFA:0005003
is_a: UBERON:0002049 ! vasculature
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001042
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001042 ! chordate pharynx
[Term]
id: UBERON:0007304
name: limb/fin vasculature
synonym: "fin vasculature" NARROW SENSU [ZFA:0005095]
xref: TAO:0005095
xref: ZFA:0005095
is_a: UBERON:0002049 ! vasculature
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0004708
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0004708 ! limb/fin
relationship: part_of UBERON:0004708 ! limb/fin
[Term]
id: UBERON:0007306
name: pronephric glomerular capillary
xref: TAO:0005309
xref: ZFA:0005309
is_a: UBERON:0004212 ! glomerular capillary
relationship: part_of UBERON:0002120
intersection_of: UBERON:0004212 ! glomerular capillary
intersection_of: part_of UBERON:0002120 ! pronephros
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0007307
name: pronephric glomerular basement membrane
xref: TAO:0005313
xref: ZFA:0005313
is_a: UBERON:0005777 ! glomerular basement membrane
relationship: part_of UBERON:0002120
intersection_of: UBERON:0005777 ! glomerular basement membrane
intersection_of: part_of UBERON:0002120 ! pronephros
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0007308
name: pronephric distal early tubule
xref: TAO:0002236
xref: ZFA:0001622
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006337 ! distal early tubule
relationship: part_of UBERON:0002120
intersection_of: UBERON:0006337 ! distal early tubule
intersection_of: part_of UBERON:0002120 ! pronephros
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0007311
name: sputum
def: "Matter ejected from the lungs, bronchi, and trachea, through the mouth." [Dorlands_Medical_Dictionary:MerckSource]
synonym: "expectoration" RELATED [BTO:0001297]
xref: BTO:0001297
xref: GAID:1171
xref: MA:0002536
xref: MESH:A.12.200.808
xref: ncithesaurus:Sputum
is_a: UBERON:0006538 ! respiratory system fluid/secretion
relationship: part_of UBERON:0006524 ! alveolar system
[Term]
id: UBERON:0007312
name: pudendal artery
xref: MA:0002028
xref: SCTID:277968003
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0007314
name: superior external pudendal artery
xref: MA:0002029
is_a: UBERON:0007312 ! pudendal artery
[Term]
id: UBERON:0007315
name: internal pudendal artery
def: "The internal pudendal artery is an artery that branches off the internal iliac artery, providing blood to the external genitalia. The internal pudendal artery is the terminal branch of the anterior trunk of the internal iliac artery. It is smaller in the female than in the male." [Wikipedia:Internal_pudendal_artery]
synonym: "arteria pudenda interna" RELATED LATIN [Wikipedia:Internal_pudendal_artery]
synonym: "internal pudendal vessels" RELATED [Wikipedia:Internal_pudendal_artery]
synonym: "internal pudic artery" RELATED [Wikipedia:Internal_pudendal_artery]
xref: FMA:18835
xref: http://upload.wikimedia.org/wikipedia/commons/3/3a/Gray1244.png
xref: SCTID:244309002
is_a: UBERON:0007312 ! pudendal artery
[Term]
id: UBERON:0007316
name: deep external pudendal artery
def: "The deep external pudendal artery (deep external pudic artery), more deeply seated than the superficial external pudendal artery, passes medialward across the Pectineus and the Adductor longus muscles; it is covered by the fascia lata, which it pierces at the medial side of the thigh, and is distributed, in the male, to the integument of the scrotum and perineum, in the female to the labium majus; its branches anastomose with the scrotal (or labial) branches of the perineal artery." [Wikipedia:Deep_external_pudendal_artery]
synonym: "arteria pudenda externa profunda" RELATED LATIN [Wikipedia:Deep_external_pudendal_artery]
xref: FMA:20739
xref: http://upload.wikimedia.org/wikipedia/commons/4/43/Gray549.png
xref: SCTID:31708008
is_a: UBERON:0007312 ! pudendal artery
[Term]
id: UBERON:0007317
name: superficial external pudendal artery
def: "The superficial external pudendal artery (superficial external pudic artery) arises from the medial side of the femoral artery, close to the superficial epigastric artery and superficial iliac circumflex artery." [Wikipedia:Superficial_external_pudendal_artery]
synonym: "arteria pudenda externa superficialis" RELATED LATIN [Wikipedia:Superficial_external_pudendal_artery]
xref: FMA:20738
xref: http://upload.wikimedia.org/wikipedia/commons/4/43/Gray549.png
xref: SCTID:47954000
is_a: UBERON:0003520 ! pelvis blood vessel
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0007312 ! pudendal artery
relationship: branch_of UBERON:0002060 ! femoral artery
relationship: part_of UBERON:0001308 ! external iliac artery
relationship: part_of UBERON:0002060 ! femoral artery
[Term]
id: UBERON:0007318
name: saphenous vein
def: "Either of two main superficial veins of the leg, one larger than the other, that begin at the foot." [BTO:0001808]
xref: BTO:0001808
xref: MA:0002215
xref: MESH:A.07.231.908.819
xref: ncithesaurus:Saphenous_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0007319
name: medial saphenous vein
comment: todo - check
synonym: "medial accessory saphenous vein" EXACT [FMA:44322]
xref: FMA:44322
xref: MA:0002173
is_a: UBERON:0007318 ! saphenous vein
relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein
relationship: tributary_of UBERON:0001363 {source="FMA/obol"} ! great saphenous vein
[Term]
id: UBERON:0007321
name: lateral saphenous vein
comment: todo - check
synonym: "lateral accessory saphenous vein" EXACT [FMA:44321]
xref: FMA:44321
xref: MA:0002161
is_a: UBERON:0007318 ! saphenous vein
relationship: tributary_of UBERON:0001361 {source="FMA/obol"} ! femoral vein
relationship: tributary_of UBERON:0001363 {source="FMA/obol"} ! great saphenous vein
[Term]
id: UBERON:0007324
name: pancreatic lobe
comment: todo - check
synonym: "lobulus pancreaticus" EXACT [FMA:16012]
synonym: "pancreatic lobule" EXACT [FMA:16012]
xref: FMA:16012
xref: MA:0000721
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000017 ! exocrine pancreas
[Term]
id: UBERON:0007329
name: pancreatic duct
def: "A duct that is part of the pancreas and connected to the duodenum." [UBERON:cjm, Wikipedia:Pancreatic_duct]
comment: note that this class groups together accessory (dorsal) and main (ventral) pancreatic ducts. AO notes: in EHDAA2, the dorsal and ventral ducts are classified as epithelial sacs - review after overhaul of duct/epithelia terms
subset: vertebrate_core
synonym: "duct of pancreas" EXACT [OBOL:automatic]
synonym: "ductus pancreaticus" RELATED LATIN [Wikipedia:Pancreatic_duct]
synonym: "pancreas duct" EXACT [OBOL:automatic]
xref: EHDAA:9194
xref: FMA:10419
xref: http://upload.wikimedia.org/wikipedia/commons/1/15/Gray1100.png
xref: MA:0000124
xref: SCTID:181278006
xref: TAO:0001372
xref: VHOG:0000254
xref: ZFA:0001372
is_a: UBERON:0003928 {source="ZFA"} ! digestive system duct
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: continuous_with UBERON:0002114 ! duodenum
relationship: develops_from UBERON:0003922 ! pancreatic bud
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0007330
name: rhamphotheca
def: "thin keratinized layer of epidermis projecting from outer surface of beak[WP]." [Wikipedia:Beak#Rhamphotheca]
comment: Development notes: This covering arises from the Malpighian cells of the bird's epidermis,[9] growing from plates at the base of each mandible[WP]
synonym: "horny sheath" RELATED []
synonym: "outer keratin layer of beak" RELATED []
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001003 ! epidermis
relationship: part_of UBERON:0005094 ! beak
[Term]
id: UBERON:0007331
name: maxillary rhamphotheca
synonym: "maxillary beak" RELATED []
synonym: "rhinotheca" RELATED [Wikipedia:Beak#Rhamphotheca]
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0007330 ! rhamphotheca
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0010012
intersection_of: UBERON:0007330 ! rhamphotheca
intersection_of: part_of UBERON:0010012 ! upper beak
relationship: part_of UBERON:0010012 ! upper beak
[Term]
id: UBERON:0007332
name: mandibular rhamphotheca
synonym: "gnathotheca" RELATED [Wikipedia:Beak#Rhamphotheca]
synonym: "mandibular beak" RELATED []
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0007330 ! rhamphotheca
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0010013
intersection_of: UBERON:0007330 ! rhamphotheca
intersection_of: part_of UBERON:0010013 ! lower beak
relationship: part_of UBERON:0010013 ! lower beak
[Term]
id: UBERON:0007333
name: avian pallium
def: "In the anatomy of animals, an avian pallium is the dorsal telencephalon of a bird's brain. Pallium of avian species tend to be relatively large, comprising ~75% of the telencephalic volume." [Wikipedia:Avian_pallium]
xref: BTO:0003399
is_a: UBERON:0000203 ! pallium
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0007334
name: nidopallium
def: "The nidopallium, meaning nested pallium, is the region of the avian brain that is used mostly for some types of executive functions but also other higher cognitive tasks. The region was renamed to nidopallium in 2002 during the Avian Brain Nomenclature Consortium because the prior name suggested that the region was used for more primitive functions." [http://en.wikipedia.org/wiki/Avian_Brain_Nomenclature_Consortium, Wikipedia:Nidopallium]
synonym: "nested pallium" RELATED [BTO:0003389]
xref: BTO:0003389
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0007333 ! avian pallium
[Term]
id: UBERON:0007347
name: hyperpallium
def: "Birds have a unique pallial structure known as the hyperpallium, once called the hyperstriatum." [Wikipedia:Hyperpallium]
synonym: "hyperstriatum" RELATED [BTO:0003400]
xref: BTO:0003400
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0007333 ! avian pallium
[Term]
id: UBERON:0007349
name: mesopallium
synonym: "middle pallium" RELATED [BTO:0003405]
xref: BTO:0003405
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0007333 ! avian pallium
[Term]
id: UBERON:0007350
name: arcopallium
def: "The arcopallium refers to regions of the avian brain which partially overlap regions homologous to the amygdala of mammals. These regions have formerly been referred to as archistriatum, and before this epistriatum or amygdaloid complex[1], and a recent change of nomenclature has divided the region into the arcopallium and posterior pallial amygdala.[2] The new nomenclature, adopted in 2004, reflects a modern understanding that the avian brain is broadly similar to the mammalian brain, containing large regions homologous to the mammalian neocortex, claustrum, and pallial amygdala. The outdated nomenclature it replaced perceived the avian brain as consisting almost entirely of enlarged basal ganglia, to which more complex outer layers had been added during a progress toward mammalian intelligence." [Wikipedia:Arcopallium]
synonym: "arched pallium" RELATED [BTO:0003408]
synonym: "archistriatum" RELATED [BM:ARCO, http://www.avianbrain.org/archistriatum.html]
xref: BM:ARCO
xref: BTO:0003408
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0007333 ! avian pallium
[Term]
id: UBERON:0007351
name: nucleus isthmo-opticus
synonym: "nucleus isthmoopticus" RELATED [BTO:0003411]
xref: BTO:0003411
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0007333 ! avian pallium
[Term]
id: UBERON:0007352
name: stria vascularis vasculature
def: "blood vessels supplying the stria vascularis in the cochlea of the inner ear." [MP:0004368]
is_a: UBERON:0002200 ! vasculature of head
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004522 ! vasculature of musculoskeletal system
is_a: UBERON:0006876 ! vasculature of organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002282
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002282 ! stria vascularis of cochlear duct
relationship: part_of UBERON:0002282 ! stria vascularis of cochlear duct
[Term]
id: UBERON:0007354
name: cartilage of pharyngotympanic tube
def: "The cartilage of pharyngotympanic tube, about 24 mm. in length, is formed of a triangular plate of elastic fibrocartilage, the apex of which is attached to the margin of the medial end of the osseous portion of the tube, while its base lies directly under the mucous membrane of the nasal part of the pharynx, where it forms an elevation, the torus tubarius or cushion, behind the pharyngeal orifice of the tube. The upper edge of the cartilage is curled upon itself, being bent laterally so as to present on transverse section the appearance of a hook; a groove or furrow is thus produced, which is open below and laterally, and this part of the canal is completed by fibrous membrane. The cartilage lies in a groove between the petrous part of the temporal and the great wing of the sphenoid; this groove ends opposite the middle of the medial pterygoid plate. The cartilaginous and bony portions of the tube are not in the same plane, the former inclining downward a little more than the latter. The diameter of the tube is not uniform throughout, being greatest at the pharyngeal orifice, least at the junction of the bony and cartilaginous portions, and again increased toward the tympanic cavity; the narrowest part of the tube is termed the isthmus. The position and relations of the pharyngeal orifice are described with the nasal part of the pharynx. The mucous membrane of the tube is continuous in front with that of the nasal part of the pharynx, and behind with that of the tympanic cavity; it is covered with ciliated epithelium and is thin in the osseous portion, while in the cartilaginous portion it contains many mucous glands and near the pharyngeal orifice a considerable amount of adenoid tissue, which has been named by Gerlach the tube tonsil. The tube is opened during deglutition by the Salpingopharyngeus and Dilatator tubC&. The latter arises from the hook of the cartilage and from the membranous part of the tube, and blends below with the Tensor veli palatini." [Wikipedia:Cartilage_of_pharyngotympanic_tube]
synonym: "cartilage of auditory tube" EXACT [FMA:60096]
synonym: "cartilage of eustachian tube" EXACT [FMA:60096]
synonym: "cartilago tubae auditivae" EXACT [FMA:60096, FMA:TA]
synonym: "cartilago tubae auditivae; cartilago tubae auditoriae" RELATED LATIN [Wikipedia:Cartilage_of_pharyngotympanic_tube]
synonym: "cartilago tubae auditoriae" EXACT [FMA:60096, FMA:TA]
synonym: "pharyngotympanic tube cartilage" EXACT [FMA:60096]
xref: FMA:60096
xref: http://upload.wikimedia.org/wikipedia/commons/b/b9/Gray915.png
xref: SCTID:362565000
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003566 ! head connective tissue
relationship: part_of UBERON:0002393
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0002393 ! pharyngotympanic tube
relationship: part_of UBERON:0002393 ! pharyngotympanic tube
[Term]
id: UBERON:0007355
name: bony part of pharyngotympanic tube
def: "The bony part of pharyngotympanic tube is about 12 mm. in length. It begins in the carotid wall of the tympanic cavity, below the septum canalis musculotubarii, and, gradually narrowing, ends at the angle of junction of the squama and the petrous portion of the temporal bone, its extremity presenting a jagged margin which serves for the attachment of the cartilaginous portion." [Wikipedia:Bony_part_of_pharyngotympanic_tube]
synonym: "bony part of auditory tube" EXACT [FMA:60057]
synonym: "bony part of eustachian tube" EXACT [FMA:60057]
synonym: "osseous portion" RELATED [Wikipedia:Bony_part_of_pharyngotympanic_tube]
synonym: "osseous portion of eustachian tube" EXACT [FMA:60057]
synonym: "pars ossea (tuba auditiva)" EXACT [FMA:60057]
synonym: "pars ossea (tuba auditoria)" EXACT [FMA:60057]
synonym: "pars ossea tubae auditivae" RELATED LATIN [Wikipedia:Bony_part_of_pharyngotympanic_tube]
xref: FMA:60057
xref: http://upload.wikimedia.org/wikipedia/commons/9/9d/Gray911.png
xref: SCTID:362563007
is_a: UBERON:0002481 ! bone tissue
is_a: UBERON:0003566 ! head connective tissue
relationship: part_of UBERON:0002393
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0002393 ! pharyngotympanic tube
relationship: part_of UBERON:0002393 ! pharyngotympanic tube
[Term]
id: UBERON:0007356
name: crop
def: "A pouched enlargement of the gullet of many birds that serves as a receptacle for food and for its preliminary maceration." [BTO:0000301, Wikipedia:Crop_(anatomy)#Birds]
comment: Editor notes: we follow WP and place as part of the esophagus. Taxon notes: Aves specific structure - consider adding functional grouping class
synonym: "esophageal diverticulum" BROAD []
xref: BTO:0000301
xref: SCTID:68028003
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0007357
name: proventriculus
def: "The glandular or true stomach of a bird that is situated between the crop and gizzard." [BTO:0001136, Wikipedia:Proventriculus]
comment: Taxon notes: consider extending to crocodilians
subset: organ_slim
xref: BTO:0001136
xref: GAID:1239
xref: MESH:A.13.853.710
xref: SCTID:63897003
is_a: UBERON:0000945 {source="cjm"} ! stomach
relationship: continuous_with UBERON:0005052 ! gizzard
relationship: continuous_with UBERON:0007356 ! crop
relationship: has_part UBERON:0010038 {source="Wikipedia"} ! fundic gastric gland
[Term]
id: UBERON:0007358
name: abomasum
def: "The fourth stomach of ruminating animals. It is also called the \"true\" stomach. It is an elongated pear-shaped sac lying on the floor of the abdomen, on the right-hand side, and roughly between the seventh and twelfth ribs. It leads to the beginning of the small intestine. (From Black's Veterinary Dictionary, 17th ed)" [MESH:A.13.869.106, Wikipedia:Abomasum]
subset: organ_slim
synonym: "fourth stomach" RELATED [BTO:0000024]
synonym: "maw" RELATED [Wikipedia:Abomasum]
synonym: "read" RELATED [Wikipedia:Abomasum]
synonym: "rennet-bag" RELATED [Wikipedia:Abomasum]
xref: BTO:0000024
xref: GAID:1241
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png
xref: MESH:A.13.869.106
xref: ncithesaurus:Abomasum
xref: SCTID:410028001
is_a: UBERON:0007366 ! ruminant stomach
relationship: has_part UBERON:0006924 ! stomach glandular epithelium
[Term]
id: UBERON:0007359
name: ruminant forestomach
def: "Any of the first three stomachs of a ruminant, i.e., the rumen, reticulum, or omasum." [BTO:0000480]
comment: Development/homology notes: You will still see the statement in some texts that the parts of the forestomach are derived from the embryonic esophagus, and that's the reason why (like the esophagus) they're lined with stratified squamous epithelium. This is open to doubt. While there is no doubt that the rumen, reticulum, and omasum are all derived from the embryonic foregut, there is evidence to indicate that all three come from that an area of the foregut homologous to the part that develops into the single stomach of non-ruminants. If this is so, then the forestomach can be considered diverticula (or derivatives) of the stomach proper, not the esophagus, despite the nature of the lining -- http://www.vetmed.vt.edu/education/curriculum/vm8054/labs/lab21/Examples/exrumen.htm
subset: organ_slim
synonym: "forestomach" BROAD SENSU [BTO:0000480]
xref: BTO:0000480
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png
is_a: UBERON:0007366 ! ruminant stomach
relationship: develops_from UBERON:0001041 ! foregut
relationship: has_part UBERON:0010040 ! stomach non-glandular epithelium
[Term]
id: UBERON:0007361
name: ruminant reticulum
def: "The second stomach of ruminants. It lies almost in the midline in the front of the abdomen, in contact with the liver and diaphragm and communicates freely with the RUMEN via the ruminoreticular orifice. The lining of the reticulum is raised into folds forming a honeycomb pattern over the surface. (From Concise Veterinary Dictionary, 1988)" [MESH:A.13.869.697, Wikipedia:Reticulum_(anatomy)]
synonym: "reticulum" BROAD SENSU [BTO:0000347]
xref: BTO:0000347
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png
xref: MESH:A.13.869.697
xref: ncithesaurus:Reticulum
xref: SCTID:23703003
is_a: UBERON:0007359 ! ruminant forestomach
relationship: has_part UBERON:0010040 ! stomach non-glandular epithelium
relationship: part_of UBERON:0007364 ! reticulorumen
[Term]
id: UBERON:0007362
name: omasum
def: "The third stomach of ruminants, situated on the right side of the abdomen at a higher level than the fourth stomach and between this latter and the second stomach, with both of which it communicates. From its inner surface project large numbers of leaves or folia, each of which possesses roughened surfaces. In the center of each folium is a band of muscle fibers which produces a rasping movement of the leaf when it contracts. One leaf rubs against those on either side of it, and large particles of food material are ground down between the rough surfaces, preparatory to further digestion in the succeeeding parts of the alimentary canal. (Black's Veterinary Dictionary, 17th ed)" [MESH:A.13.869.524, Wikipedia:Omasum]
synonym: "omasum" RELATED [MESH:A.13.869.524]
xref: BTO:0000348
xref: GAID:1242
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png
xref: MESH:A.13.869.524
xref: ncithesaurus:Omasum
xref: SCTID:410028001
is_a: UBERON:0007359 ! ruminant forestomach
relationship: has_part UBERON:0010040 ! stomach non-glandular epithelium
[Term]
id: UBERON:0007364
name: reticulorumen
def: "first chamber in the alimentary canal of ruminant animals. It is composed of the rumen and reticulum. The reticulum differs from the rumen with regard to the texture of its lining. The rumen wall is covered in small finger like projections called papillae, which are flattened, approximately 0.5 cm in length and 0.3 cm wide in cattle. The reticulum is lined with ridges that form a hexagonal honeycomb pattern. The ridges are approximately 0.1 - 0.2 mm wide and are raised 0.5 cm above the reticulum wall. The hexagons in the reticulum are approximately 2-5 cm wide in cattle. Despite the differences in the texture of the lining of the two parts of the reticulorumen, it represents one functional space. Microbial fermentation degrades ingested carbohydrates in the reticulorumen to the volatile fatty acids acetate, propionate and butyrate, and proteins to short peptides, amino acids and ammonia. This fermentation is anaerobic and allows the microbes in the reticulorumen to derive the energy and amino nitrogen in order that they can reproduce. Ruminants absorb the volatile fatty acids across the reticulorumen wall and use them for energy, while the microbes eventually flow out of the rumen into the remainder of the alimentary canal, where they are eventually digested and absorbed. The reticulum, at approximately 5-20 litres, is considerably smaller in capacity than the rumen, which is approximately 100-200 litres in cattle. The oesophageal groove, which links the oesophagus and the omasum is located in the reticulum[WP]." [Wikipedia:Reticulorumen]
synonym: "retriculo-rumen" EXACT []
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0007366 ! ruminant stomach
[Term]
id: UBERON:0007365
name: rumen
def: "The first stomach of ruminants. It lies on the left side of the body, occupying the whole of the left side of the abdomen and even stretching across the median plane of the body to the right side. It is capacious, divided into an upper and a lower sac, each of which has a blind sac at its posterior extremity. The rumen is lined by mucous membrane containing no digestive glands, but mucus-secreting glands are present in large numbers. Coarse, partially chewed food is stored and churned in the rumen until the animal finds circumstances convenient for rumination. When this occurs, little balls of food are regurgitated through the esophagus into the mouth, and are subjected to a second more thorough mastication, swallowed, and passed on into other parts of the compound stomach. (From Black's Veterinary Dictionary, 17th ed)." [MESH:A.13.869.804, Wikipedia:Rumen]
comment: Structure notes: There is no muscularis mucosae in the rumen
synonym: "paunch" RELATED [BTO:0001194]
xref: BTO:0001194
xref: GAID:1244
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png
xref: MESH:A.13.869.804
xref: ncithesaurus:Rumen
xref: SCTID:45138000
is_a: UBERON:0007359 ! ruminant forestomach
relationship: has_part UBERON:0010040 ! stomach non-glandular epithelium
relationship: part_of UBERON:0007364 ! reticulorumen
[Term]
id: UBERON:0007366
name: ruminant stomach
def: "The ruminants' stomach consists of four compartments: rumen, reticulum, omasum and abomasum. The first three compartments comprise the forestomach (proventriculus). They are lined with nonglandular membrane. The fourth compartment, the abomasum comprises the true stomach of the ruminants. It is lined with glandular mucous membrane. The rumen lies on the left of the abdominal cavity, the reticulum cranially and the omasum on the right. The abomasum lies ventrally, its proximal end lies ventral to the rumen, reticulum and omasum" [http://www.onemedicine.tuskegee.edu/DigestiveSystem/Stomach/Stomach_Ruminants.html]
comment: Editor notes: in future this ontology may distinguish between stomachs lined with glandular epithelium ("true" stomachs) and non-glandular
xref: GAID:1240
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Abomasum_%28PSF%29.png
xref: MESH:A.13.869
is_a: UBERON:0000945 ! stomach
[Term]
id: UBERON:0007367
name: surface of tongue
synonym: "tongue surface" EXACT [FMA:54647]
xref: FMA:54647
xref: SCTID:314870004
is_a: UBERON:0006984 ! anatomical surface
relationship: part_of UBERON:0001723
intersection_of: UBERON:0006984 ! anatomical surface
intersection_of: part_of UBERON:0001723 ! tongue
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0007371
name: superior surface of tongue
synonym: "dorsal surface of tongue" EXACT [FMA:54646]
xref: FMA:54646
is_a: UBERON:0007367 ! surface of tongue
[Term]
id: UBERON:0007373
name: inferior surface of tongue
synonym: "ventral surface of tongue" EXACT [FMA:54648]
xref: FMA:54648
xref: SCTID:362100003
is_a: UBERON:0007367 ! surface of tongue
[Term]
id: UBERON:0007374
name: incus cartilage condensation
xref: EMAPA:18228
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0006248 ! incus pre-cartilage condensation
[Term]
id: UBERON:0007375
name: primary or secondary palate
def: "Either the primary or secondary palate" [UBERON:cjm]
subset: grouping_class
synonym: "palate" EXACT []
synonym: "palatum" EXACT INCONSISTENT []
xref: AAO:0010535
property_value: UBPROP:0000001 "Roof of the mouth lined with ciliated epithelium.[AAO]" xsd:string
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0007376
name: outer epithelial layer
def: "The epidermis is the entire outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]. The epidermis of a more complex invertebrate is just one-layer deep, and may be protected by a non-cellular cuticle. The epidermis of a higher vertebrate has many layers, and the outer layers are reinforced with keratin and then die[WP]." [Wikipedia:Epidermis_(zoology)]
comment: Editor's note: this grouping class exists primarily to align with GO - see GO:0008544.
subset: grouping_class
synonym: "epidermis" NARROW [GO:0008544]
synonym: "hypodermis" RELATED INCONSISTENT [GO:0008544, WBbt:0005733]
synonym: "outer epidermal layer" EXACT []
xref: FBbt:00004993
xref: HAO:0000298
xref: TADS:0000109
xref: WBbt:0005733
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0003102 ! surface structure
relationship: surrounds UBERON:0000468
intersection_of: UBERON:0000483 ! epithelium
intersection_of: surrounds UBERON:0000468 ! multi-cellular organism
relationship: surrounds UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0007377
name: stratum compactum
def: "Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network." [ISBN10:0073040584, ZFIN:ZDB-PUB-040726-12]
comment: connective tissue in the skin is usually diffuse and irregular, although in some species collagen bundles are arranged in a distinct ordered layer in the dermis
synonym: "dermal deep region" EXACT [ZFA:0001182]
xref: AAO:0010600
xref: TAO:0001182
xref: ZFA:0001182
property_value: UBPROP:0000001 "Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network. Le Guellec et al, 2004.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from collagenous dermal stroma (TAO:0001186)[TAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0007378
name: egg yolk
def: "The yellow spheroidal mass of stored food that forms the inner portion of the egg of a bird or reptile and is surrounded by the white." [BTO:0000371, Wikipedia:Yolk]
synonym: "yolk" RELATED [BTO:0000371]
xref: AAO:0010579
xref: BTO:0000371
xref: MESH:A.16.631.325
xref: ncithesaurus:Egg_Yolk
xref: VHOG:0001742
property_value: UBPROP:0000001 "Extraembryonic structure that serves as a nutrient store for the embryo during development.[AAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0007379 ! egg
[Term]
id: UBERON:0007379
name: egg
def: "The hard-shelled reproductive body produced by a bird and especially by the common domestic chicken; also: its contents used as food." [BTO:0000369, Wikipedia:Egg_(biology)]
xref: BTO:0000369
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0007380
name: dermal scale
def: "Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins." [TAO:curator, Wikipedia:Scale_(zoology)#Fish_scales]
synonym: "fish scale" RELATED [Wikipedia:Scale_(zoology)#Fish_scales]
synonym: "scales" EXACT PLURAL [ZFA:0000277]
xref: AAO:0010056
xref: TAO:0000277
xref: VSAO:0000048
xref: ZFA:0000277
is_a: UBERON:0002542 ! scale
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0007381
name: epidermal scale
def: "." [Wikipedia:Reptile_scales]
is_a: UBERON:0002542 ! scale
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0007383
name: enveloping layer of ectoderm
def: "Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Originallu this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm." [ISBN:9780878932504, ZFIN:ZDB-PUB-961014-576]
synonym: "enveloping layer" EXACT [ZFIN:ZDB-PUB-961014-576]
synonym: "EVL" EXACT [ZFA:0000086]
xref: EFO:0003425
xref: TAO:0000086
xref: ZFA:0000086
property_value: UBPROP:0000001 "Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Sometimes used synonymously with periderm. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: develops_from superficial blastomere (TAO:0001484)[TAO]" xsd:string
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0007384
name: limb/fin lymph vessel
xref: TAO:0005300
xref: ZFA:0005300
is_a: UBERON:0001473 ! lymphatic vessel
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0004708
intersection_of: UBERON:0001473 ! lymphatic vessel
intersection_of: part_of UBERON:0004708 ! limb/fin
relationship: part_of UBERON:0004708 ! limb/fin
relationship: part_of UBERON:0007304 ! limb/fin vasculature
[Term]
id: UBERON:0007385
name: pectoral appendage lymph vessel
xref: TAO:0005302
xref: ZFA:0005302
is_a: UBERON:0007384 ! limb/fin lymph vessel
relationship: part_of UBERON:0004710
intersection_of: UBERON:0001473 ! lymphatic vessel
intersection_of: part_of UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0007302 ! pectoral appendage vasculature
[Term]
id: UBERON:0007386
name: pelvic appendage lymph vessel
is_a: UBERON:0007384 ! limb/fin lymph vessel
relationship: part_of UBERON:0004709
intersection_of: UBERON:0001473 ! lymphatic vessel
intersection_of: part_of UBERON:0004709 ! pelvic appendage
relationship: part_of UBERON:0004709 ! pelvic appendage
[Term]
id: UBERON:0007389
name: limb/fin fin cartilage
xref: TAO:0001543
xref: ZFA:0001543
property_value: UBPROP:0000001 "Cartilage which is part of one of the paired fins.[TAO]" xsd:string
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0004708
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0004708 ! limb/fin
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
relationship: part_of UBERON:0004708 ! limb/fin
[Term]
id: UBERON:0007390
name: pectoral appendage cartilage
xref: TAO:0000257
xref: ZFA:0000257
property_value: UBPROP:0000001 "Cartilage which is part of the pectoral fin.[TAO]" xsd:string
is_a: UBERON:0007389 ! limb/fin fin cartilage
relationship: part_of UBERON:0004710
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0007272 ! pectoral appendage skeleton
[Term]
id: UBERON:0007391
name: pelvic appendage cartilage
xref: TAO:0001459
xref: ZFA:0001459
property_value: UBPROP:0000001 "Cartilage which is part of the pelvic fin.[TAO]" xsd:string
is_a: UBERON:0007389 ! limb/fin fin cartilage
relationship: part_of UBERON:0004709
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0004709 ! pelvic appendage
relationship: part_of UBERON:0004709 ! pelvic appendage
relationship: part_of UBERON:0007273 ! pelvic appendage skeleton
[Term]
id: UBERON:0007412
name: midbrain raphe nuclei
def: "Midline nuclei found in the midbrain, includes the dorsal raphe nucleus and the rostral linear nucleus of raphe." [NIF_GrossAnatomy:birnlex_1676]
comment: todo - check. note BTO class is placed here as it is placed in hindbrain
synonym: "midbrain raphe" EXACT [NIF_GrossAnatomy:birnlex_1676]
synonym: "midbrain raphe nuclei" EXACT [NIF_GrossAnatomy:birnlex_1676]
synonym: "nuclei raphes tegmenti mesencephali" EXACT [FMA:77787, FMA:TA]
synonym: "raphe nuclei of tegmentum of midbrain" EXACT [FMA:77787]
synonym: "raphe nucleus" BROAD [BTO:0003387]
synonym: "set of raphe nuclei of tegmentum of midbrain" EXACT [FMA:77787]
xref: ABA:RAmb
xref: BTO:0003387
xref: FMA:77787
xref: NIF_GrossAnatomy:birnlex_1676
property_value: "spatially_disjoint_from" UBERON:0001965
property_value: "spatially_disjoint_from" UBERON:0002142
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0004684 {source="Wikipedia"} ! raphe nuclei
[Term]
id: UBERON:0007413
name: nucleus of pontine reticular formation
synonym: "pontine reticular formation nucleus" EXACT [FMA:72245]
xref: ABA:PRNr
xref: FMA:72245
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0002573
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0002573 ! pontine reticular formation
relationship: part_of UBERON:0002573 ! pontine reticular formation
[Term]
id: UBERON:0007414
name: nucleus of midbrain tegmentum
xref: FMA:258768
is_a: UBERON:0002635 ! regional part of midbrain tegmentum
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009661 ! midbrain nucleus
relationship: part_of UBERON:0001943
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0001943 ! midbrain tegmentum
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0007415
name: nucleus of midbrain reticular formation
synonym: "midbrain reticular formation nucleus" EXACT [FMA:62443]
synonym: "midbrain reticular nucleus" EXACT [ABA:MRN]
xref: ABA:MRN
xref: FMA:62443
is_a: UBERON:0007414 ! nucleus of midbrain tegmentum
relationship: part_of UBERON:0002639
intersection_of: UBERON:0007414 ! nucleus of midbrain tegmentum
intersection_of: part_of UBERON:0002639 ! midbrain reticular formation
relationship: part_of UBERON:0002639 ! midbrain reticular formation
[Term]
id: UBERON:0007416
name: cerebellar peduncle
xref: FMA:272298
xref: MA:0002742
xref: ncithesaurus:Cerebellar_Peduncle
xref: SCTID:362417003
is_a: UBERON:0007417 {source="FMA"} ! peduncle of neuraxis
relationship: part_of UBERON:0002474 ! cerebellar peduncular complex
[Term]
id: UBERON:0007417
name: peduncle of neuraxis
synonym: "neuraxis peduncle" EXACT [FMA:83860]
xref: FMA:83860
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0007418
name: decussation of neuraxis
synonym: "neuraxis decussation" EXACT [FMA:83858]
xref: FMA:83858
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0007425
name: decussation of diencephalon
synonym: "diencephalon decussation" EXACT [FMA:62446]
xref: FMA:62446
is_a: UBERON:0003931 ! diencephalic white matter
is_a: UBERON:0007418 {source="FMA"} ! decussation of neuraxis
relationship: part_of UBERON:0001894
intersection_of: UBERON:0007418 ! decussation of neuraxis
intersection_of: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001894 {source="Obol"} ! diencephalon
[Term]
id: UBERON:0007440
name: stratum intermedium
def: "The stratum intermedium in a developing tooth is a layer of two or three cells between the inner enamel epithelium and the newly forming cells of the stellate reticulum. It first appears during the early bell stage of tooth development, at around the 14th week of intrauterine life (in humans). The stratum intermedium has a notably high alkaline phosphatase activity. This layer, along with the inner enamel epithelium, is responsible for the tooth enamel formation. It is a part of the dental (enamel) organ." [Wikipedia:Stratum_intermedium]
xref: BTO:0005009
xref: ncithesaurus:Stratum_Intermedium
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ
[Term]
id: UBERON:0007473
name: cavity of vesicle
alt_id: EHDAA2:0003079
def: "The space within an epithelial sphere." [AEO:JB]
xref: AEO:0000079
is_a: UBERON:0000464 ! anatomical space
relationship: surrounded_by UBERON:0007503
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: surrounded_by UBERON:0007503 ! epithelial vesicle
relationship: surrounded_by UBERON:0007503 ! epithelial vesicle
[Term]
id: UBERON:0007475
name: matrix-based tissue
alt_id: EHDAA2:0003081
def: "A tissue whose predominant feature is extracellular matrix which may or may not be highly hydrated or calcified." [AEO:JB]
xref: AEO:0000081
xref: EHDAA2:0003081
is_a: UBERON:0000479 {source="AEO"} ! tissue
[Term]
id: UBERON:0007486
name: fluid-based anatomical entity
alt_id: EHDAA2:0003095
def: "Fluid anatomical entity containing cells." [AEO:JB]
xref: AEO:0000095
xref: EHDAA2:0003095
is_a: UBERON:0000481 {source="AEO"} ! multi-tissue structure
[Term]
id: UBERON:0007490
name: keratin-based acellular structure
alt_id: EHDAA2:0003099
def: "Acellular anatomical structure whose predominant constituent is keratin." [AEO:JB]
xref: AEO:0000099
xref: EHDAA2:0003099
is_a: UBERON:0000476 {source="AEO"} ! acellular anatomical structure
[Term]
id: UBERON:0007491
name: chitin-based acellular structure
alt_id: EHDAA2:0003100
def: "Acellular anatomical structure whose predominant constituent is chitin." [AEO:JB]
xref: AEO:0000100
xref: EHDAA2:0003100
is_a: UBERON:0000476 {source="AEO"} ! acellular anatomical structure
[Term]
id: UBERON:0007497
name: developing epithelial placode
alt_id: EHDAA2:0003112
def: "A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure." [JB:DEF]
synonym: "epithelial placode" EXACT [AEO:0000112]
xref: AEO:0000112
xref: AEO:0000218
xref: EHDAA2:0003112
is_a: UBERON:0000485 {source="AEO"} ! simple columnar epithelium
is_a: UBERON:0001048 ! primordium
relationship: develops_into UBERON:0000061
intersection_of: UBERON:0000483 ! epithelium
intersection_of: develops_into UBERON:0000061 ! anatomical structure
relationship: develops_into UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0007499
name: epithelial sac
def: "An epithelial tube that is open at one end only." [AEO:JB, UBERONREF:0000001]
xref: AEO:0000115
xref: EHDAA2:0003115
is_a: UBERON:0003914 {source="AEO"} ! epithelial tube
is_a: UBERON:0009856 ! sac
[Term]
id: UBERON:0007500
name: epithelial tube open at both ends
def: "An epithelial tube open at both ends that allows fluid flow." [AEO:JB, UBERONREF:0000001]
xref: AEO:0000116
xref: RETIRED_EHDAA2:0003116
is_a: UBERON:0003914 {source="AEO"} ! epithelial tube
[Term]
id: UBERON:0007501
name: arborizing epithelial duct system
alt_id: EHDAA2:0003117
def: "A collection of connected epithelial tubes with a single portal." [AEO:JB, UBERONREF:0000001]
synonym: "arborising epithelial duct system" EXACT [AEO:0000117]
xref: AEO:0000117
xref: EHDAA2:0003117
is_a: UBERON:0000480 ! anatomical group
relationship: has_part UBERON:0003914 {source="AEO"} ! epithelial tube
[Term]
id: UBERON:0007502
name: epithelial plexus
alt_id: EHDAA2:0003118
def: "A complex of interlinking epithelial tubules." [AEO:JB]
xref: AEO:0000118
xref: EHDAA2:0003118
is_a: UBERON:0000480 ! anatomical group
relationship: has_part UBERON:0003914 {source="AEO"} ! epithelial tube
[Term]
id: UBERON:0007503
name: epithelial vesicle
alt_id: EHDAA2:0003119
def: "A closed epithelium with a lumen." [AEO:JB]
xref: AEO:0000119
xref: EHDAA2:0003119
is_a: UBERON:0000483 {source="AEO"} ! epithelium
[Term]
id: UBERON:0007521
name: smooth muscle sphincter
def: "A ring of smooth muscle cells whose contraction closes the opening of the ring." [AEO:JB]
xref: AEO:0000143
xref: EHDAA2:0003143
xref: SCTID:362915001
is_a: UBERON:0001135 {source="AEO"} ! smooth muscle tissue
is_a: UBERON:0004590 ! sphincter muscle
[Term]
id: UBERON:0007522
name: striated muscle sphincter
def: "A ring of striated muscle cells whose contraction closes the opening of the ring." [AEO:JB]
xref: AEO:0000144
xref: EHDAA2:0003144
is_a: UBERON:0002036 {source="AEO"} ! striated muscle tissue
is_a: UBERON:0004590 ! sphincter muscle
[Term]
id: UBERON:0007524
name: dense mesenchyme tissue
alt_id: EHDAA2:0003146
def: "Mesenchyme with little extracellular matrix." [AEO:JB]
xref: AEO:0000146
xref: EHDAA2:0003146
is_a: UBERON:0003104 {source="AEO"} ! mesenchyme
[Term]
id: UBERON:0007529
name: loose mesenchyme tissue
alt_id: EHDAA2:0003151
def: "Mesenchyme whose cells are embedded in obvious amounts of extracellular matrix." [AEO:JB]
xref: AEO:0000151
xref: EHDAA2:0003151
is_a: UBERON:0003104 {source="AEO"} ! mesenchyme
[Term]
id: UBERON:0007530
name: migrating mesenchyme population
alt_id: EHDAA2:0003152
def: "Mesenchymal cells that are migrating." [AEO:JB]
comment: Editors note: this class will be an important part of the NC reorganization
xref: AEO:0000152
xref: EHDAA2:0003152
is_a: UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0007540
name: surface sense organ
comment: obsoleted due to incorrect logical definition. A new class with the same name may be created in the future.
is_obsolete: true
[Term]
id: UBERON:0007567
name: regenerating anatomical structure
alt_id: EHDAA2:0003233
def: "An anatomical structure that, as part of its normal physiology, undergoes regeneration. Examples include endometrium and antlers." [AEO:JB]
synonym: "regenerating tissue" RELATED [ZFA:0005147]
xref: AEO:0000200
xref: EHDAA2:0003233
xref: TAO:0005147
xref: XAO:0004059
xref: ZFA:0005147
property_value: UBPROP:0000001 "A portion of tissue that is regrowing after damage or amputation.[TAO]" xsd:string
is_a: UBERON:0000061 {source="AEO"} ! anatomical structure
[Term]
id: UBERON:0007573
name: migrating epithelium
alt_id: EHDAA2:0003251
def: "An epithelium that extends its surface area by peripheral movement." [AEO:JB]
xref: AEO:0000206
xref: EHDAA2:0003251
is_a: UBERON:0000483 {source="AEO"} ! epithelium
[Term]
id: UBERON:0007574
name: apical epidermal cap
synonym: "apical epidermal caps" EXACT PLURAL [ZFA:0005148]
xref: TAO:0005148
xref: ZFA:0005148
xref: ZFIN:ZDB-ANAT-070928-184
property_value: UBPROP:0000001 "Part of the regeneration epithelium closest to the fin.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of regeneration epithelium (TAO:0001389)[TAO]" xsd:string
is_a: UBERON:0007567 {source="ZFA"} ! regenerating anatomical structure
[Term]
id: UBERON:0007589
name: ciliated columnar oviduct epithelium
comment: in FMA, epithelium of uterine tube is a subclass of ciliated columnar epithelium. MA introduces subtypes: ciliated columnar and cuboidal. We map the FMA type according to its relationships, not its label
xref: FMA:62016
xref: MA:0001719
is_a: UBERON:0004804 {source="MA"} ! oviduct epithelium
is_a: UBERON:0007592 {source="FMA"} ! ciliated columnar epithelium
relationship: part_of UBERON:0000993
intersection_of: UBERON:0007592 ! ciliated columnar epithelium
intersection_of: part_of UBERON:0000993 ! oviduct
relationship: part_of UBERON:0000993 ! oviduct
[Term]
id: UBERON:0007590
name: cuboidal oviduct epithelium
xref: MA:0001720
is_a: UBERON:0004804 {source="MA"} ! oviduct epithelium
[Term]
id: UBERON:0007592
name: ciliated columnar epithelium
def: "Simple columnar epithelium in which the luminal side of the cells bears cilia. Examples: epithelium of trachea, epithelium of uterine tube.[FMA]" [FMA:64798]
xref: FMA:64798
is_a: UBERON:0000485 {source="FMA"} ! simple columnar epithelium
is_a: UBERON:0007601 ! ciliated epithelium
[Term]
id: UBERON:0007601
name: ciliated epithelium
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0007602
name: stratified columnar epithelium
def: "Multilaminar epithelium which consists of more than one layer of columnar cells, only one layer of which is in contact with a basement membrane. Examples: ciliated stratified columnar epithelium, epithelium of lactiferous sinus.[FMA]" [FMA:45564]
synonym: "epithelium stratificatum columnare" EXACT [FMA:45564]
xref: FMA:45564
xref: ncithesaurus:Stratified_Columnar_Epithelium
is_a: UBERON:0000486 {source="FMA"} ! multilaminar epithelium
[Term]
id: UBERON:0007603
name: stratified cuboidal epithelium
def: "Stratified cuboidal epithelia is a rare type of epithelial tissue composed of cuboidally shaped cells arranged in multiple layers. They protect areas such as ducts of sweat glands, mammary glands, and salivary glands." [Wikipedia:Stratified_cuboidal_epithelium]
synonym: "epithelium stratificatum cuboideum" EXACT [FMA:63912]
xref: FMA:63912
xref: http://upload.wikimedia.org/wikipedia/commons/1/18/Gray940.png
xref: ncithesaurus:Stratified_Cuboidal_Epithelium
is_a: UBERON:0000486 {source="FMA"} ! multilaminar epithelium
is_a: UBERON:0010077 ! cuboidal epithelium
[Term]
id: UBERON:0007606
name: ciliated stratified columnar epithelium
xref: FMA:67521
is_a: UBERON:0007601 ! ciliated epithelium
is_a: UBERON:0007602 {source="FMA"} ! stratified columnar epithelium
[Term]
id: UBERON:0007610
name: tibial artery
def: "The anterior and posterior arteries created at the bifurcation of the popliteal artery. The anterior tibial artery begins at the lower border of the popliteus muscle and lies along the tibia at the distal part of the leg to surface superficially anterior to the ankle joint. Its branches are distributed throughout the leg, ankle, and foot. The posterior tibial artery begins at the lower border of the popliteus muscle, lies behind the tibia in the lower part of its course, and is found situated between the medial malleolus and the medial process of the calcaneal tuberosity. Its branches are distributed throughout the leg and foot." [MESH:A.07.231.114.895]
xref: GAID:514
xref: MA:0002067
xref: MESH:A.07.231.114.895
xref: ncithesaurus:Tibial_Artery
xref: SCTID:181351007
is_a: UBERON:0001637 {source="MESH"} ! artery
is_a: UBERON:0003516 ! hindlimb blood vessel
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0007612
name: extensor digitorum communis
def: "A muscle on the back of the forearm that extends the fingers and wrist." [BTO:0001343, Wikipedia:Extensor_digitorum_muscle]
synonym: "extensor digitorum" EXACT [FMA:38500]
synonym: "extensor digitorum communis muscle" EXACT []
synonym: "musculus extensor digitorum" RELATED LATIN [Wikipedia:Extensor_digitorum_muscle]
xref: BTO:0001343
xref: FMA:38500
xref: http://upload.wikimedia.org/wikipedia/commons/e/e9/Extensor_digitorum_muscle.png
xref: MA:0002293
xref: ncithesaurus:Extensor_Digitorum_Communis
is_a: UBERON:0011024 {source="Wikipedia"} ! extrinsic extensor muscle of hand
relationship: has_muscle_antagonist UBERON:0001523 {source="dbpedia"} ! flexor digitorum profundus
relationship: has_muscle_antagonist UBERON:0003222 {source="dbpedia"} ! flexor digitorum superficialis
relationship: has_muscle_insertion UBERON:0004300 {source="dbpedia", notes="extensor expansion of middle and distal phalanges of the 2nd 3rd 4th and 5th fingers"} ! distal phalanx
[Term]
id: UBERON:0007613
name: extensor digitorum lateralis muscle
comment: Origin distal to extensor digitorum communis. The part of this muscle that gives a tendon to the 5th digit is comparable to the extensor digiti quinti proprius of the human [ISBN10:9780716717553]
synonym: "extensor digitorum lateralis" EXACT [MA:0002294]
xref: MA:0002294
xref: ncithesaurus:Extensor_Digitorum_Lateralis
property_value: RO:0002161 NCBITaxon:9606
is_a: UBERON:0011024 {source="Wikipedia"} ! extrinsic extensor muscle of hand
relationship: has_muscle_insertion UBERON:0003639 {source="ISBN10:9780716717553"} ! hand digit 5 phalanx
[Term]
id: UBERON:0007614
name: extensor digiti minimi muscle
def: "The extensor minimi digiti (extensor digiti quinti proprius) is a slender muscle of the forearm, placed on the ulnar side of the Extensor digitorum communis, with which it is generally connected. It arises from the common Extensor tendon by a thin tendinous slip, from the intermuscular septa between it and the adjacent muscles. Its tendon runs through a compartment of the dorsal carpal ligament behind the distal radio-ulnar joint, then divides into two as it crosses the hand, and finally joins the expansion of the Extensor digitorum communis tendon on the dorsum of the first phalanx of the little finger[WP]." [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml, Wikipedia:Extensor_digiti_minimi_muscle]
comment: The tendon of insertion is sometimes divided and gives a slip to the fourth digit. An ulnar slip has been observed to end on the base of the fifth metacarpal, thus exactly reproducing the arrangement of the serially homologous slip known as peroneus tertius in the leg. The muscle may be absent in rare cases, but fusion with extensor digitorum is frequent, in which case the tendon comes from the common extensor.
synonym: "extensor digiti minimi" RELATED [Wikipedia:Extensor_digiti_minimi_muscle]
synonym: "extensor digiti minimi %28hand%29" RELATED [Wikipedia:Extensor_digiti_minimi_muscle]
synonym: "extensor digiti quinti proprius" RELATED [http://www.anatomyatlases.org/AnatomicVariants/MuscularSystem/Text/E/14Extensor.shtml, Wikipedia:Extensor_digiti_minimi_muscle]
synonym: "musculus extensor digiti minimi" RELATED LATIN [Wikipedia:Extensor_digiti_minimi_muscle]
xref: FMA:38503
xref: http://upload.wikimedia.org/wikipedia/commons/1/15/Gray424.png
xref: SCTID:361819009
is_a: UBERON:0011024 {source="Wikipedia"} ! extrinsic extensor muscle of hand
relationship: has_muscle_insertion UBERON:0004331 {notes="at the extensor expansion located at the base of the proximal phalanx of digit V on the dorsal side", source="dbpedia"} ! proximal phalanx of hand digit 5
relationship: has_muscle_origin UBERON:0006807 {notes="the anterior portion of the lateral epicondyle of the humerus", source="dbpedia"} ! ectepicondyle of humerus
[Term]
id: UBERON:0007615
name: prostate gland ventral lobe
def: "Prostate gland lobe that in the mouse has the following characteristics: grossly, clear, gelatinous, and leaf-like; originates ventrally and wraps incompletely around the urethra dorsally, bilaterally. Simple columnar epithelium with the least amount of infolding. Secretory cells are oval and have slightly foamy cytoplasm; nuclei and basal nucleoli are inconspicuous. The secretion is pale and homogeneous. The stroma is thin" [PMID:15163300]
xref: BTO:0000490
xref: MA:0001740
property_value: RO:0002161 NCBITaxon:9606
is_a: UBERON:0001328 {source="MA"} ! lobe of prostate
[Term]
id: UBERON:0007616
name: layer of synovial tissue
def: "A thin, loose vascular connective tissue that makes up the membranes surrounding joints and the sheaths protecting tendons (particularly flexor tendons in the hands and feet) where they pass over bony prominences. Synovial tissue contains synovial cells, which secrete a viscous liquid called synovial fluid; this liquid contains protein and hyaluronic acid and serves as a lubricant and nutrient for the joint cartilage surfaces[BTO]. Synovial tissue can be found in tendons (tissues that connect muscle to bone), bursae (fluid-filled, cushioning sacs found in spaces between tendons, ligaments, and bones), and the cavity (hollow enclosed area) that separates the bones of a freely movable joint, such as the knee or elbow[BTO]." [BTO:0001338, http://www.britannica.com/EBchecked/topic/578563/synovial-tissue]
synonym: "stratum synoviale" NARROW [FMA:TA]
synonym: "synovial layer" NARROW [FMA:66762]
synonym: "synovial membrane" NARROW [FMA:66762]
synonym: "synovial tissue" RELATED [BTO:0001338]
xref: BTO:0001338
xref: FMA:66762
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0002384 {source="BTO"} ! connective tissue
relationship: secretes UBERON:0001090
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: secretes UBERON:0001090 ! synovial fluid
relationship: secretes UBERON:0001090 ! synovial fluid
[Term]
id: UBERON:0007617
name: synovial cavity of joint
synonym: "articular cavity (synovial joint)" EXACT [FMA:11356]
synonym: "cavitas articularis (junctura synovialis)" EXACT [FMA:11356]
synonym: "cavity of synovial joint" EXACT [FMA:11356]
xref: FMA:11356
is_a: UBERON:0002553 ! anatomical cavity
relationship: surrounded_by UBERON:0002217
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: surrounded_by UBERON:0002217 ! synovial joint
relationship: surrounded_by UBERON:0002217 ! synovial joint
[Term]
id: UBERON:0007618
name: synovial cavity of hip joint
xref: EMAPA:19021
xref: FMA:9701
is_a: UBERON:0007617 ! synovial cavity of joint
relationship: part_of UBERON:0001486
intersection_of: UBERON:0007617 ! synovial cavity of joint
intersection_of: part_of UBERON:0001486 ! hip joint
relationship: part_of UBERON:0001486 ! hip joint
relationship: part_of UBERON:0001486 {source="FMA"} ! hip joint
[Term]
id: UBERON:0007619
name: limiting membrane of retina
comment: MA does treat internal/external limiting membranes as layers - these are classified as laminae. We do not follow this convention. However, we do following MA is grouping these terms together
synonym: "retina lamina" EXACT [MA:0001318]
xref: MA:0001318
xref: SCTID:280667001
is_a: UBERON:0003902 ! retinal neural layer
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0007622
name: pecten oculi
def: "a comb-like structure of blood vessels belonging to the choroid in the eye of a bird or reptile. It is non-sensory and is a pigmented structure that projects into the vitreous body from the point where the optic nerve enters the eyeball. The pecten is believed to both nourish the retina and control the pH of the vitreous body." [Wikipedia:Pecten_oculi]
is_a: UBERON:0002203 ! vasculature of eye
relationship: part_of UBERON:0001776 ! choroid
[Term]
id: UBERON:0007623
name: comb and wattle
def: "A wattle is a fleshy dewlap or caruncle hanging from various parts of the head or neck in several groups of birds, goats and other animals. In some birds the caruncle is erectile tissue." [Wikipedia:Wattle_(anatomy)]
synonym: "comb" RELATED [GAID:1207]
synonym: "wattle" RELATED [GAID:1207]
synonym: "wattles and comb" RELATED [GAID:1207]
xref: GAID:1207
xref: MESH:A.13.242
is_a: UBERON:0000061 {source="GAID"} ! anatomical structure
[Term]
id: UBERON:0007625
name: pigment epithelium of eye
def: " epithelial layer of the retina, ciliary body, or iris composed of cells containing pigment granules." [MP:0005200]
synonym: "eye pigment epithelium" RELATED [MESH:A.09.371.670]
xref: GAID:907
xref: MESH:A.09.371.670
is_a: UBERON:0000483 ! epithelium
relationship: part_of UBERON:0000970
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000970 ! eye
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0007626
name: subparaventricular zone
xref: ABA:SBPV
xref: MA:0000842
property_value: "spatially_disjoint_from" UBERON:0001934
property_value: "spatially_disjoint_from" UBERON:0002034
property_value: "spatially_disjoint_from" UBERON:0002219
property_value: "spatially_disjoint_from" UBERON:0002625
property_value: "spatially_disjoint_from" UBERON:0002689
property_value: "spatially_disjoint_from" UBERON:0002690
is_a: UBERON:0003048 ! regional part of hypothalamus
relationship: part_of UBERON:0002272 {source="MA"} ! medial zone of hypothalamus
[Term]
id: UBERON:0007627
name: magnocellular nucleus of stria terminalis
def: "." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3220]
comment: the magnocellular nucleus projects to virtually all known major parts of the brain network that controls pelvic functions, including micturition, defecation, and penile erection, as well as to brain networks controlling nutrient and body water homeostasis. This and other evidence suggests that the magnocellular nucleus is part of a corticostriatopallidal differentiation modulating and coordinating pelvic functions with the maintenance of nutrient and body water homeostasis[PMID:16304682]
xref: ABA:BSTmg
xref: MA:0000928
property_value: "spatially_disjoint_from" UBERON:0003017
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0011173 {source="MA"} ! anterior division of bed nuclei of stria terminalis
[Term]
id: UBERON:0007628
name: lateral septal complex
comment: todo - split nucleus and complex
xref: ABA:LSX
xref: FMA:61878
xref: MA:0000933
is_a: UBERON:0002663 {source="MA"} ! septal nuclear complex
relationship: part_of UBERON:0002435 {source="ABA"} ! striatum
[Term]
id: UBERON:0007629
name: medial septal complex
xref: ABA:MSC
xref: FMA:61879
xref: MA:0000934
property_value: "spatially_disjoint_from" UBERON:0002977
is_a: UBERON:0002663 {source="MA"} ! septal nuclear complex
[Term]
id: UBERON:0007630
name: septohippocampal nucleus
xref: ABA:SH
xref: MA:0000939
property_value: "spatially_disjoint_from" UBERON:0001878
property_value: "spatially_disjoint_from" UBERON:0002667
is_a: UBERON:0002663 {source="MA"} ! septal nuclear complex
relationship: part_of UBERON:0007628 ! lateral septal complex
[Term]
id: UBERON:0007631
name: accessory olfactory bulb glomerular layer
xref: ABA:AOBgl
xref: MA:0000967
is_a: UBERON:0011215 ! cell part cluster of neuraxis
relationship: part_of UBERON:0004069 {source="ABA"} ! accessory olfactory bulb
[Term]
id: UBERON:0007632
name: Barrington's nucleus
xref: ABA:B
xref: MA:0001011
property_value: "spatially_disjoint_from" UBERON:0002143
property_value: "spatially_disjoint_from" UBERON:0002147
property_value: "spatially_disjoint_from" UBERON:0002149
property_value: "spatially_disjoint_from" UBERON:0002151
property_value: "spatially_disjoint_from" UBERON:0002633
property_value: "spatially_disjoint_from" UBERON:0002682
property_value: "spatially_disjoint_from" UBERON:0002963
property_value: "spatially_disjoint_from" UBERON:0002968
property_value: "spatially_disjoint_from" UBERON:0003011
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0000988 {source="MA"} ! pons
[Term]
id: UBERON:0007633
name: nucleus of trapezoid body
comment: consider splitting into nucleus and complex
xref: ABA:NTB
xref: BM:NTB
xref: FMA:84023
xref: MA:0001018
xref: NIF_GrossAnatomy:birnlex_745
xref: SCTID:362405000
property_value: "spatially_disjoint_from" UBERON:0002126
property_value: "spatially_disjoint_from" UBERON:0002162
property_value: "spatially_disjoint_from" UBERON:0002591
property_value: "spatially_disjoint_from" UBERON:0002610
property_value: "spatially_disjoint_from" UBERON:0002864
property_value: "spatially_disjoint_from" UBERON:0002866
property_value: "spatially_disjoint_from" UBERON:0002873
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0000988 {source="MA"} ! pons
[Term]
id: UBERON:0007634
name: parabrachial nucleus
xref: ABA:PB
xref: BM:PB
xref: MA:0001019
property_value: "spatially_disjoint_from" UBERON:0002128
property_value: "spatially_disjoint_from" UBERON:0002597
property_value: "spatially_disjoint_from" UBERON:0006840
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0000988 {source="MA"} ! pons
[Term]
id: UBERON:0007635
name: nucleus of medulla oblongata
xref: FMA:258772
xref: SCTID:304943004
is_a: UBERON:0002678 ! regional part of medulla oblongata
is_a: UBERON:0006331 ! brainstem nucleus
is_a: UBERON:0009662 ! hindbrain nucleus
relationship: part_of UBERON:0001896
intersection_of: UBERON:0000125 ! neural nucleus
intersection_of: part_of UBERON:0001896 ! medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0007637
name: hippocampus stratum lucidum
def: "A cytoarchitectural term denoting the layer of the CA3 field of the HIPPOCAMPUS that is deep to the Stratum pyramidale hippocampi and superficial to the Stratum radiatum (Hof-2000)." [nif_annot:NeuroNames_defSource, Wikipedia:Stratum_lucidum_of_hippocampus]
synonym: "stratum lucidum" BROAD [NIF_GrossAnatomy:birnlex_4108]
synonym: "stratum lucidum hippocampi" RELATED LATIN [Wikipedia:Stratum_lucidum_of_hippocampus]
xref: ncithesaurus:Stratum_Lucidum
xref: NIF_GrossAnatomy:birnlex_4108
xref: SCTID:419156002
is_a: UBERON:0002305 {source="NIF_GrossAnatomy"} ! layer of hippocampus
[Term]
id: UBERON:0007639
name: hippocampus alveus
def: "Regional part of fornix consisting of a thin layer of white matter on the surface of the hippocampal formation, bordering the wall of the lateral ventricle and composed of white, myelinated fibers. The alveus arises from cell bodies in the subiculum and hippocampus, and eventually merges with the fimbria of the hippocampus. The fimbria goes on to become the fornix (MM: 2006-10-26)." [NIF_GrossAnatomy:birnlex_1510]
comment: todo - check xref: ncithesaurus:Alveus
synonym: "alveus" EXACT [NIF_GrossAnatomy:birnlex_1510]
synonym: "alveus of hippocampus" EXACT [FMA:83867]
synonym: "neuraxis alveus" EXACT [FMA:83867]
xref: FMA:83867
xref: ncithesaurus:Alveus
xref: NIF_GrossAnatomy:birnlex_1510
xref: SCTID:369094002
is_a: UBERON:0002305 {source="Wikipedia"} ! layer of hippocampus
[Term]
id: UBERON:0007640
name: hippocampus stratum lacunosum moleculare
def: "A cytoarchitectural term denoting the outermost layer of the hippocampus (Stephan-75) (NeuroNames)." [nif_annot:NeuroNames_defSource]
synonym: "lacunar-molecular layer of hippocampus" EXACT [FMA:83149]
synonym: "stratum lacunosum moleculare" EXACT [NIF_GrossAnatomy:birnlex_1359]
synonym: "stratum lacunosum-moleculare" EXACT [ABA:ABA]
xref: FMA:83149
xref: NIF_GrossAnatomy:birnlex_1359
is_a: UBERON:0002305 ! layer of hippocampus
[Term]
id: UBERON:0007641
name: trigeminal nuclear complex
def: "The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. There is also a distinct trigeminal motor nucleus that is medial to the chief sensory nucleus[WP]." [Wikipedia:Trigeminal_nerve_nuclei]
comment: In MA and FMA this is part of the pons / pontime tegmentum. We weaken this to overlaps to avoid inconsistency. In NIF this is a composite structure spanning multiple regions, which is more appropriate.
synonym: "nuclei trigemini" RELATED LATIN [Wikipedia:Trigeminal_nerve_nuclei]
synonym: "trigeminal nuclei" EXACT [FMA:71248]
xref: BM:V
xref: FMA:71248
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png
xref: NIF_GrossAnatomy:birnlex_4096
is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis
relationship: continuous_with UBERON:0001645 ! trigeminal nerve
relationship: overlaps UBERON:0003023 {source="FMA"} ! pontine tegmentum
[Term]
id: UBERON:0007642
name: ligamentum arteriosum
def: "a small ligament attached to the superior surface of the pulmonary trunk and the inferior surface of the aortic arch. It is a nonfunctional vestige of the ductus arteriosus, and is formed within three weeks of birth. The ligamentum arteriosum is closely related to the left recurrent laryngeal nerve, a branch of the left vagus nerve. After splitting from the left vagus nerve, the left recurrent laryngeal loops around the aortic arch posterior to the ligamentum arteriosum, after which it ascends to the larynx[WP]." [Wikipedia:Ligamentum_arteriosum]
synonym: "arterial ligament" RELATED [Wikipedia:Ligamentum_arteriosum]
synonym: "Botallo's duct" EXACT [FMA:13421]
synonym: "Botallo's ligament" EXACT [FMA:13421]
synonym: "Harvey's ligament" EXACT [FMA:13421]
xref: FMA:13421
xref: SCTID:198009004
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0006591 {source="FMA"} ! transformed artery
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0005440
intersection_of: UBERON:0006591 ! transformed artery
intersection_of: develops_from UBERON:0005440 ! ductus arteriosus
relationship: develops_from UBERON:0005440 ! ductus arteriosus
[Term]
id: UBERON:0007643
name: node of ligamentum arteriosum
def: "an inconstant lymph node of the anterior mediastinal group located adjacent to the ligamentum arteriosum." [http://www.mondofacto.com/facts/dictionary?node+of+ligamentum+arteriosum]
synonym: "Botallo's node" EXACT [FMA:74033]
synonym: "ligamentum arteriosum node" EXACT [FMA:74033]
synonym: "lymph node of ligamentum arteriosum" EXACT [UBERON:cjm]
synonym: "nodus ligamenti arteriosi" EXACT [http://www.mondofacto.com/facts/dictionary?node+of+ligamentum+arteriosum]
xref: FMA:74033
is_a: UBERON:0002524 {source="FMA"} ! mediastinal lymph node
relationship: adjacent_to UBERON:0007642 ! ligamentum arteriosum
[Term]
id: UBERON:0007644
name: thoracic lymph node
def: "A lymph node that is part of a thorax. Includes lymph nodes of the lungs and mediastinal lymph nodes" [Obol:automatic, Wikipedia:Lymph_node#Lymph_nodes_of_the_thorax]
synonym: "lymph node of thorax" EXACT [FMA:12772]
xref: FMA:12772
xref: ncithesaurus:Thoracic_Lymph_Node
xref: SCTID:196374005
is_a: UBERON:0000029 {source="FMA"} ! lymph node
relationship: part_of UBERON:0000915
intersection_of: UBERON:0000029 ! lymph node
intersection_of: part_of UBERON:0000915 ! thoracic segment of trunk
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0007645
name: future meninx
comment: The zebrafish primitive meninx develops from neural crest[UBERONREF:0000002]. In EHDAA2 the meninges are divided by layer and location, each has differing developmental origins - mesenchyme from mesoderm/endoderm, mesenchyme from NC
synonym: "primitive meninx" RELATED []
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0002360 ! meninx
relationship: has_developmental_contribution_from UBERON:0000926 ! mesoderm
relationship: has_developmental_contribution_from UBERON:0002342 {source="ISBN10:0073040584"} ! neural crest
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0007646
name: endomeninx
def: "the layer of embryonic mesoderm from which the arachnoid coat and pia mater of the brain develop." [http://www.merriam-webster.com/medical/endomeninx]
is_a: UBERON:0007645 ! future meninx
[Term]
id: UBERON:0007647
name: ectomeninx
def: "the layer of mesoderm from which the dura mater and much of the membrane bone of the skull develop in the higher vertebrate embryo." [http://www.merriam-webster.com/medical/ectomeninx]
is_a: UBERON:0007645 ! future meninx
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0007650
name: esophagogastric junction
def: "the junction between the esophagus and the stomach epithelium" [http://www.thefreedictionary.com/esophagogastric+junction]
synonym: "cardioesophageal junction" EXACT [FMA:9434]
synonym: "esophageal sphincter" RELATED [MESH:A.03.365.414]
synonym: "esophagogastric junction" RELATED [MESH:A.03.365.414]
synonym: "gastroesophageal junction" EXACT [FMA:9434]
xref: BTO:0004364
xref: FMA:9434
xref: GAID:292
xref: MESH:A.03.365.414
xref: ncithesaurus:Gastroesophageal_Junction
xref: SCTID:362130006
is_a: UBERON:0007651 ! anatomical junction
relationship: adjacent_to UBERON:0001043 {source="MESH"} ! esophagus
relationship: adjacent_to UBERON:0001276 {source="tFD"} ! epithelium of stomach
[Term]
id: UBERON:0007651
name: anatomical junction
def: "Anatomical structure in which parts of two or more anatomical structures establish physical continuity with one another or intermingle their component parts. Examples: gastroesophageal junction, line alba, knee joint.[FMA]" [FMA:5898]
subset: upper_level
xref: FMA:5898
xref: SCTID:91833003
is_a: UBERON:0000061 {source="FMA"} ! anatomical structure
[Term]
id: UBERON:0007652
name: esophageal sphincter
comment: editor note - check for specific subtypes across species. Note mammals have upper and lower, but lower is really part of cardia and thus is not classified under here
synonym: "oesophagial sphincter" EXACT [ZFA:0000415]
xref: SCTID:277765007
xref: TAO:0000415
xref: ZFA:0000415
is_a: UBERON:0003832 ! esophagus muscle
is_a: UBERON:0004590 ! sphincter muscle
relationship: part_of UBERON:0001043
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0007653
name: capillary loop nephron
def: "Developing nephron where the developing glomerular capsule has been invaded by a glomerular capillary loop called the glomerular tuft." [ZFIN:curator]
comment: TODO
synonym: "developing capillary loop stage nephron" EXACT [EMAPA:28506]
synonym: "stage III nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Capillary_loop.html]
xref: EMAPA:28506
xref: ZFA:0005590
is_a: UBERON:0010532 {source="cjm"} ! primitive nephron
relationship: develops_from UBERON:0004199 {source="ZFA"} ! S-shaped body
[Term]
id: UBERON:0007654
name: maturing nephron
comment: TODO
synonym: "stage IV nephron" RELATED [EMAPA:28485]
xref: EMAPA:28485
is_a: UBERON:0010532 {source="cjm"} ! primitive nephron
relationship: develops_from UBERON:0007653 ! capillary loop nephron
relationship: part_of UBERON:0001225 {source="EMAPA"} ! cortex of kidney
[Term]
id: UBERON:0007656
name: lateral recess of fourth ventricle
def: "The lateral recess is a projection of the fourth ventricle which extends into the inferior cerebellar peduncle of the brainstem. The lateral aperture, an opening in each extremity of the lateral recess, provides a conduit for cerebrospinal fluid to flow from the brain's ventricular system into the subarachnoid space." [Wikipedia:Lateral_recess]
synonym: "lateral recess" BROAD [EMAPA:17257]
synonym: "recessus lateralis ventriculi quarti" RELATED LATIN [Wikipedia:Lateral_recess]
xref: EMAPA:17257
xref: FMA:78470
xref: http://upload.wikimedia.org/wikipedia/commons/3/36/Gray768.png
xref: SCTID:369283008
is_a: UBERON:0000464 {source="FMA"} ! anatomical space
disjoint_from: UBERON:0008902 ! lateral recess of third vetricle
relationship: part_of UBERON:0002422 {source="EMAPA"} ! fourth ventricle
[Term]
id: UBERON:0007657
name: anular ligament of radius
def: "The anular ligament (orbicular ligament) is a strong band of fibers, which encircles the head of the radius (bone), and retains it in contact with the radial notch of the ulna" [Wikipedia:Anular_ligament_of_radius]
synonym: "annular ligament of radius" EXACT [FMA:38872]
synonym: "anular ligament" BROAD [EMAPA:19322]
synonym: "ligamentum anulare radii" EXACT [FMA:38872, FMA:TA]
synonym: "orbicular ligament of radius" EXACT [FMA:38872]
xref: EMAPA:19322
xref: FMA:38872
xref: SCTID:182394000
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003574 ! elbow connective tissue
is_a: UBERON:0004268 ! lower arm connective tissue
relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint
relationship: part_of UBERON:0007165 {source="FMA"} ! proximal radio-ulnar joint
[Term]
id: UBERON:0007679
name: intersegmental vein
def: "a vein receiving blood from adjacent bronchopulmonary segments; it emerges from the inferior margin of a segment to become a tributary of a branch of a pulmonary vein[web]. Primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel[ZFA]." [http://www.medilexicon.com/medicaldictionary.php?t=97310, ZFIN:ZDB-PUB-030908-4]
synonym: "intersegmental pulmonary vein" EXACT [FMA:76965]
synonym: "ISV" BROAD [ZFA:0001057]
synonym: "segmental vein" RELATED [EMAPA:26056]
xref: EMAPA:26056
xref: FMA:76965
xref: SCTID:361448009
xref: TAO:0001057
xref: ZFA:0001057
property_value: UBPROP:0000001 "Primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel. Isogai et al. 2003.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass intersegmental vessel (TAO:0001285)[TAO]" xsd:string
is_a: UBERON:0002016 {source="FMA"} ! pulmonary vein
[Term]
id: UBERON:0007681
name: facial neural crest
def: "Cranial neural crest that is part of the facial region." [ZFA:0000875]
xref: EMAPA:16311
xref: TAO:0000875
xref: VHOG:0001209
xref: ZFA:0000875
is_a: UBERON:0003099 {source="ZFA"} ! cranial neural crest
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0003104 {source="OG"} ! mesenchyme
relationship: part_of UBERON:0007213 {source="EMAPA"} ! mesenchyme derived from head neural crest
[Term]
id: UBERON:0007683
name: lateral mesenchyme derived from mesoderm
xref: EFO:0003590
xref: EMAPA:16409
xref: TAO:0000905
xref: ZFA:0000905
is_a: UBERON:0005256 {source="ZFA"} ! trunk mesenchyme
[Term]
id: UBERON:0007684
name: uriniferous tubule
def: "functional unit of the kidney that forms urine, consisting of two parts, the nephron and the collecting tubule." [ISBN10:0073040584]
xref: FMA:17691
is_a: UBERON:0003914 ! epithelial tube
is_a: UBERON:0004819 ! kidney epithelium
is_a: UBERON:0006555 ! excretory tube
relationship: part_of UBERON:0002113 {source="FMA"} ! kidney
[Term]
id: UBERON:0007685
name: region of nephron tubule
comment: note - consider moving MA:0000377 renal tubule here, as it includes the various segments (proximal etc) as subclasses, not parts
synonym: "renal tubule region" EXACT [FMA:17692]
xref: FMA:17692
is_a: UBERON:0001231 ! nephron tubule
is_a: UBERON:0004810 ! nephron tubule epithelium
relationship: part_of UBERON:0001231 ! nephron tubule
[Term]
id: UBERON:0007686
name: Hatschek's pit/nephridium
is_obsolete: true
[Term]
id: UBERON:0007687
name: kidney field
def: "region of the embryo into the area in which the kidney rudiment will develop." [GO:0072004, GOC:mtg_kidney_jan10]
synonym: "kidney anlage" RELATED [GOC:mtg_kidney_jan10]
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0007688
name: anlage
def: "Anlagen are populations of contiguous cells, typically arranged in one plane, that are morphologically indistinct, but that already correspond in extent to a later organ/tissue." [FBbt:00005426, JB:DEF, Wikipedia:Anlage_(biology)]
synonym: "field" RELATED []
xref: AEO:0000170
xref: EHDAA2:0003170
xref: FBbt:00005426
is_a: UBERON:0000479 {source="FBbt"} ! tissue
is_a: UBERON:0005423 {source="EHDAA2"} ! developing anatomical structure
[Term]
id: UBERON:0007689
name: thyroid diverticulum
def: "endodermal bud derived from the endodermal epithelium of the embryonic pharyngeal floor[MP]. The thyroid diverticulum is the embryological structure from which thyroid follicular cells derive. It grows from the floor of the pharnyx[WP]." [MP:0004662, Wikipedia:Thyroid_diverticulum]
synonym: "saccus thyroideus; diverticulum thyroideum" RELATED LATIN [Wikipedia:Thyroid_diverticulum]
is_a: UBERON:0001048 ! primordium
relationship: develops_from UBERON:0003091 ! thyroid primordium
[Term]
id: UBERON:0007690
name: early pharyngeal endoderm
def: "." [http://dev.biologists.org/content/128/22/4573.full]
comment: relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm'
synonym: "early pharyngeal arch endoderm" EXACT [EHDAA2:0001457]
synonym: "pharyngeal arch endoderm" RELATED []
synonym: "pharyngeal endoderm" RELATED [ZFA:0001104]
synonym: "pharyngeal region endoderm" RELATED [EHDAA2:0001456]
xref: EFO:0003626
xref: EHDAA2:0001457
xref: EHDAA:962
xref: TAO:0001104
xref: ZFA:0001104
is_a: UBERON:0000925 {source="ZFA"} ! endoderm
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000925 {source="EHDAA2"} ! endoderm
relationship: part_of UBERON:0008814 ! pharyngeal system
relationship: part_of UBERON:0009722 {source="cjm"} ! entire pharyngeal arch endoderm
[Term]
id: UBERON:0007691
name: gustatory pore
def: "The minute opening of a taste bud on the surface of the oral mucosa through which the gustatory hairs of the specialised neuroepithelial gustatory cells project. " [http://www.mondofacto.com/facts/dictionary?gustatory+pore]
synonym: "porus gustatorius" EXACT [http://www.mondofacto.com/facts/dictionary?gustatory+pore]
synonym: "taste pore" EXACT [FMA:63589]
xref: FMA:63589
xref: http://upload.wikimedia.org/wikipedia/commons/0/0e/Taste_bud.svg
xref: ncithesaurus:Taste_Pore
xref: SCTID:368724008
is_a: UBERON:0000161 {source="FMA"} ! orifice
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001727
intersection_of: UBERON:0000161 ! orifice
intersection_of: part_of UBERON:0001727 ! taste bud
relationship: continuous_with UBERON:0000167 ! oral cavity
relationship: part_of UBERON:0001727 ! taste bud
relationship: part_of UBERON:0001727 {source="FMA"} ! taste bud
[Term]
id: UBERON:0007692
name: nucleus of thalamus
comment: todo - consider splitting nucleus and complex
synonym: "nuclear complex of thalamus" EXACT [FMA:256693]
xref: BTO:0002452
xref: FMA:256693
xref: MA:0002992
xref: SCTID:279115000
is_a: UBERON:0002730 ! regional part of thalamus
is_a: UBERON:0006569 ! diencephalic nucleus
relationship: part_of UBERON:0001897
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0001897 ! thalamus
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0007693
name: caroticotympanic artery
def: "The caroticotympanic branch (tympanic branch) is small; it enters the tympanic cavity through a minute foramen in the carotid canal, and anastomoses with the anterior tympanic branch of the internal maxillary, and with the stylomastoid artery." [Wikipedia:Caroticotympanic_arteries]
synonym: "arteriae caroticotympanicae, ramus caroticotympanicus" RELATED LATIN [Wikipedia:Caroticotympanic_arteries]
synonym: "caroticotympanic branch" RELATED [Wikipedia:Caroticotympanic_arteries]
xref: FMA:49828
xref: SCTID:148470005
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: branch_of UBERON:0001532 {source="FMA"} ! internal carotid artery
relationship: develops_from UBERON:0005608 {source="http://www.ajnr.org/cgi/content/full/21/3/572"} ! hyoid artery
[Term]
id: UBERON:0007699
name: tract of spinal cord
synonym: "spinal cord tract" EXACT [FMA:75683]
xref: FMA:75683
xref: ncithesaurus:Spinal_Cord_Tract
is_a: UBERON:0001018 ! axon tract
relationship: part_of UBERON:0002240
intersection_of: UBERON:0001018 ! axon tract
intersection_of: part_of UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0007702
name: tract of brain
comment: Editor notes: we place the NIF class here because it is part of the brain
synonym: "brain tract" EXACT [FMA:83848]
xref: FMA:83848
xref: NIF_GrossAnatomy:birnlex_1649
is_a: UBERON:0001018 ! axon tract
relationship: part_of UBERON:0000955
intersection_of: UBERON:0001018 ! axon tract
intersection_of: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0007703
name: spinothalamic tract
def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the spinal cord towards target cells in the thalamus. This axonal process is a member of those that make up the spinothalamic tract, one of the major routes of nociceptive signaling[GO]." [Wikipedia:Spinothalamic_tract]
xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Spinal_cord_tracts_-_English.svg
xref: NIF_GrossAnatomy:nlx_anat_1010017
xref: SCTID:280417000
is_a: UBERON:0007702 ! tract of brain
[Term]
id: UBERON:0007707
name: superior cerebellar peduncle of midbrain
def: "Regional part of superior cerebellar peduncle, located in the midbrain, consisting of a large bundle of fibers largely projecting from the deep cerebellar nuclei to the midbrain and thalamus. It is continuous with the superior cerebellar peduncle of the pons. (MM)." [NIF_GrossAnatomy:birnlex_1162]
synonym: "SCPMB" EXACT [NIF_GrossAnatomy:birnlex_1162]
synonym: "superior cerebellar peduncle of midbrain" EXACT [NIF_GrossAnatomy:birnlex_1162]
xref: NIF_GrossAnatomy:birnlex_1162
is_a: UBERON:0002635 ! regional part of midbrain tegmentum
is_a: UBERON:0003035 ! regional part of cerebellar white matter
relationship: part_of UBERON:0001943 {source="NIF"} ! midbrain tegmentum
relationship: part_of UBERON:0002150 ! superior cerebellar peduncle
[Term]
id: UBERON:0007709
name: superior cerebellar peduncle of pons
comment: note that FMA:72495 most likely denotes this class rather than the more generic parent, due to the part of relationship to pontine tegmentum.
synonym: "SCPP" EXACT [NIF_GrossAnatomy:birnlex_1726]
synonym: "superior cerebellar peduncle of pons" EXACT [NIF_GrossAnatomy:birnlex_1726]
xref: FMA:72495
xref: NeuroNames:1007150190
xref: NIF_GrossAnatomy:birnlex_1726
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0003035 ! regional part of cerebellar white matter
relationship: part_of UBERON:0002150 ! superior cerebellar peduncle
relationship: part_of UBERON:0003023 ! pontine tegmentum
relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum
[Term]
id: UBERON:0007710
name: intermediate nucleus of lateral lemniscus
comment: todo - check
synonym: "nucleus of the lateral lemniscus, horizontal part" EXACT [ABA:NLLh]
xref: ABA:NLLh
xref: FMA:77485
is_a: UBERON:0006840 ! nucleus of lateral lemniscus
[Term]
id: UBERON:0007711
name: sixth cervical dorsal root ganglion
synonym: "sixth cervical dorsal root ganglia" EXACT [FMA:6319]
synonym: "sixth cervical dorsal root ganglion" EXACT [NIF_GrossAnatomy:birnlex_2608]
synonym: "sixth cervical spinal ganglion" EXACT [FMA:6319]
xref: EMAPA:25159
xref: FMA:6319
xref: NIF_GrossAnatomy:birnlex_2608
is_a: UBERON:0002834 {source="NIF_GrossAnatomy"} ! cervical dorsal root ganglion
[Term]
id: UBERON:0007712
name: fourth thoracic spinal ganglion
subset: defined_by_ordinal_series
synonym: "forth thoracic dorsal root ganglion" EXACT [NIF_GrossAnatomy:birnlex_2614]
synonym: "fourth thoracic dorsal root ganglion" EXACT [UBERON:cjm]
synonym: "fourth thoracic dorsal root ganglion" EXACT [FMA:6324]
xref: EMAPA:25177
xref: FMA:6324
xref: NIF_GrossAnatomy:birnlex_2614
is_a: UBERON:0002835 {source="FMA"} ! thoracic dorsal root ganglion
[Term]
id: UBERON:0007713
name: fourth sacral spinal ganglion
synonym: "forth sacral dorsal root ganglion" EXACT [NIF_GrossAnatomy:birnlex_2631]
synonym: "fourth sacral dorsal root ganglion" EXACT [UBERON:cjm]
synonym: "fourth sacral dorsal root ganglion" EXACT [FMA:6345]
xref: EMAPA:25173
xref: FMA:6345
xref: NIF_GrossAnatomy:birnlex_2631
is_a: UBERON:0002837 {source="FMA"} ! sacral dorsal root ganglion
[Term]
id: UBERON:0007714
name: cervical subsegment of spinal cord
synonym: "segment part of cervical spinal cord" EXACT [NIF_GrossAnatomy:birnlex_1688]
xref: FMA:256653
xref: NIF_GrossAnatomy:birnlex_1688
xref: SCTID:278749009
is_a: UBERON:0005844 {source="FMA", source="NIF"} ! spinal cord segment
relationship: part_of UBERON:0002726 ! cervical spinal cord
[Term]
id: UBERON:0007715
name: thoracic subsegment of spinal cord
synonym: "segment part of thoracic spinal cord" EXACT [NIF_GrossAnatomy:birnlex_892]
xref: FMA:256655
xref: NIF_GrossAnatomy:birnlex_892
is_a: UBERON:0003038 ! thoracic spinal cord
relationship: part_of UBERON:0003038 ! thoracic spinal cord
[Term]
id: UBERON:0007716
name: lumbar subsegment of spinal cord
synonym: "segment part of lumbar spinal cord" EXACT [NIF_GrossAnatomy:birnlex_1652]
xref: FMA:256657
xref: NIF_GrossAnatomy:birnlex_1652
xref: SCTID:278751008
is_a: UBERON:0002792 ! lumbar spinal cord
relationship: part_of UBERON:0002792 ! lumbar spinal cord
[Term]
id: UBERON:0007717
name: sacral subsegment of spinal cord
synonym: "segment part of sacral spinal cord" EXACT [NIF_GrossAnatomy:birnlex_1512]
xref: FMA:256659
xref: NIF_GrossAnatomy:birnlex_1512
xref: SCTID:278752001
is_a: UBERON:0005844 {source="FMA", source="NIF"} ! spinal cord segment
relationship: part_of UBERON:0005843 ! sacral spinal cord
[Term]
id: UBERON:0007718
name: principal artery to limb
is_a: UBERON:0001637 {source="MA"} ! artery
[Term]
id: UBERON:0007719
name: bone of reproductive structure
synonym: "baculum" NARROW []
synonym: "os penis/os clitoris" RELATED []
property_value: RO:0002161 NCBITaxon:9606
is_a: UBERON:0001474 ! bone
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0005156
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0005156 ! reproductive structure
[Term]
id: UBERON:0007721
name: interphalangeal joint of toe
def: "The interphalangeal articulations of the foot (articulations of the phalanges) are ginglymoid joints, and each has a plantar and two collateral ligaments. The arrangement of these ligaments is similar to that in the metatarsophalangeal articulations: the Extensor tendons supply the places of dorsal ligaments." [Wikipedia:Interphalangeal_articulations_of_the_foot]
synonym: "foot interphalangeal joint" EXACT [MESH:A.02.835.583.378.900]
synonym: "interphalangeal joint of foot" EXACT [FMA:35225]
synonym: "toe joint" RELATED [MESH:A.02.835.583.378.900]
xref: FMA:35225
xref: MESH:A.02.835.583.378.900
xref: ncithesaurus:Interphalangeal_Joint_of_the_Foot
xref: ncithesaurus:Toe_Joint
xref: SCTID:182225005
is_a: UBERON:0001487 ! joint of foot
is_a: UBERON:0006658 ! inter-phalangeal joint
relationship: part_of UBERON:0001466
intersection_of: UBERON:0006658 ! inter-phalangeal joint
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: connects UBERON:0001449 {notes="two in series"} ! phalanx of toe
relationship: connects UBERON:0001449 {cardinality="2"} ! phalanx of toe
relationship: part_of UBERON:0001466 ! foot digit
[Term]
id: UBERON:0007722
name: interphalangeal joint of finger
def: "The interphalangeal articulations of hand are hinge-joints of the phalanges of the hand. There are two sets (except in the thumb): \"proximal interphalangeal joints\" (PIP), those between the first (also called proximal) and second (intermediate) phalanges \"distal interphalangeal joints\" (DIP), those between the second and third (distal) phalanges A similar group of articulations also function in the toes." [Wikipedia:Interphalangeal_articulations_of_the_hand]
comment: Editor notes: consider renaming: 'finger' is ambiguous as the term in some usages excludes the thumb (we include it)
synonym: "articulationes digitorum manus" EXACT [Wikipedia:Interphalangeal_articulations_of_the_hand]
synonym: "articulationes interphalangeae manus" EXACT [Wikipedia:Interphalangeal_articulations_of_the_hand]
synonym: "articulations of the digits" RELATED [Wikipedia:Interphalangeal_articulations_of_the_hand]
synonym: "interphalangeal articulations of hand" RELATED [Wikipedia:Interphalangeal_articulations_of_the_hand]
synonym: "interphalangeal joint of hand" EXACT [FMA:35285]
synonym: "interphalangeal joints of hand" RELATED [Wikipedia:Interphalangeal_articulations_of_the_hand]
synonym: "IP joint" RELATED [FMA:35285]
xref: FMA:35285
xref: ncithesaurus:Interphalangeal_Joint_of_the_Hand
xref: SCTID:303280009
is_a: UBERON:0001489 ! joint of hand
is_a: UBERON:0006658 ! inter-phalangeal joint
relationship: part_of UBERON:0002389
intersection_of: UBERON:0006658 ! inter-phalangeal joint
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: connects UBERON:0001436 {notes="two in series"} ! phalanx of finger
relationship: connects UBERON:0001436 {cardinality="2"} ! phalanx of finger
relationship: part_of UBERON:0002389 ! hand digit
[Term]
id: UBERON:0007723
name: interphalangeal joint of thumb
comment: Taxon notes: in humans, this connects proximal and distal phalanges of the thumb, so there is only a single inter-phalangeal joint - i.e. there is no distinct proximal and distal joints
synonym: "interphalangeal joint of first digit of hand" EXACT [FMA:35312]
synonym: "interphalangeal joint of hand digit 1" EXACT []
synonym: "interphalangeal joint of manus digit 1" EXACT []
synonym: "interphalangeal joint of pollex" EXACT []
xref: EMAPA:25058
xref: FMA:35312
xref: SCTID:182192008
is_a: UBERON:0007722 ! interphalangeal joint of finger
relationship: part_of UBERON:0001463
intersection_of: UBERON:0007722 ! interphalangeal joint of finger
intersection_of: part_of UBERON:0001463 ! hand digit 1
relationship: connects UBERON:0003620 {cardinality="2"} ! hand digit 1 phalanx
relationship: part_of UBERON:0001463 ! hand digit 1
[Term]
id: UBERON:0007724
name: interphalangeal joint of big toe
synonym: "interphalangeal joint of first digit of foot" EXACT [FMA:35353]
synonym: "interphalangeal joint of foot digit 1" EXACT []
synonym: "interphalangeal joint of great toe" EXACT [FMA:35353]
synonym: "interphalangeal joint of hallux" EXACT []
synonym: "interphalangeal joint of pes digit 1" EXACT []
xref: EMAPA:26430
xref: FMA:35353
xref: SCTID:363671008
is_a: UBERON:0007721 ! interphalangeal joint of toe
relationship: part_of UBERON:0003631
intersection_of: UBERON:0007721 ! interphalangeal joint of toe
intersection_of: part_of UBERON:0003631 ! foot digit 1
relationship: connects UBERON:0003640 {cardinality="2"} ! foot digit 1 phalanx
relationship: part_of UBERON:0003631 ! foot digit 1
[Term]
id: UBERON:0007725
name: interphalangeal joint of second toe
synonym: "interphalangeal joint of second digit of foot" EXACT [FMA:35356]
xref: EMAPA:26448
xref: FMA:35356
is_a: UBERON:0007721 ! interphalangeal joint of toe
relationship: part_of UBERON:0003632
intersection_of: UBERON:0007721 ! interphalangeal joint of toe
intersection_of: part_of UBERON:0003632 ! foot digit 2
relationship: connects UBERON:0003641 {cardinality="2"} ! foot digit 2 phalanx
relationship: part_of UBERON:0003632 ! foot digit 2
[Term]
id: UBERON:0007726
name: interphalangeal joint of third toe
synonym: "interphalangeal joint of third digit of foot" EXACT [FMA:35359]
xref: EMAPA:26454
xref: FMA:35359
is_a: UBERON:0007721 ! interphalangeal joint of toe
relationship: part_of UBERON:0003633
intersection_of: UBERON:0007721 ! interphalangeal joint of toe
intersection_of: part_of UBERON:0003633 ! foot digit 3
relationship: connects UBERON:0003642 {cardinality="2"} ! foot digit 3 phalanx
relationship: part_of UBERON:0003633 ! foot digit 3
[Term]
id: UBERON:0007727
name: interphalangeal joint of fourth toe
synonym: "interphalangeal joint of fourth digit of foot" EXACT [FMA:35362]
xref: EMAPA:26466
xref: FMA:35362
is_a: UBERON:0007721 ! interphalangeal joint of toe
relationship: part_of UBERON:0003634
intersection_of: UBERON:0007721 ! interphalangeal joint of toe
intersection_of: part_of UBERON:0003634 ! foot digit 4
relationship: connects UBERON:0003862 {cardinality="2"} ! foot digit 4 phalanx
relationship: part_of UBERON:0003634 ! foot digit 4
[Term]
id: UBERON:0007728
name: interphalangeal joint of little toe
synonym: "interphalangeal joint of fifth digit of foot" EXACT [FMA:35365]
synonym: "interphalangeal joint of fifth toe" EXACT [FMA:35365]
xref: EMAPA:26478
xref: FMA:35365
is_a: UBERON:0007721 ! interphalangeal joint of toe
relationship: part_of UBERON:0003635
intersection_of: UBERON:0007721 ! interphalangeal joint of toe
intersection_of: part_of UBERON:0003635 ! foot digit 5
relationship: connects UBERON:0003863 {cardinality="2"} ! foot digit 5 phalanx
relationship: part_of UBERON:0003635 ! foot digit 5
[Term]
id: UBERON:0007729
name: interphalangeal joint of index finger
synonym: "interphalangeal joint of second digit of hand" EXACT [FMA:35397]
synonym: "interphalangeal joint of second finger" EXACT [FMA:35397]
xref: EMAPA:25061
xref: FMA:35397
is_a: UBERON:0007722 ! interphalangeal joint of finger
relationship: part_of UBERON:0003622
intersection_of: UBERON:0007722 ! interphalangeal joint of finger
intersection_of: part_of UBERON:0003622 ! hand digit 2
relationship: connects UBERON:0003641 {cardinality="2"} ! foot digit 2 phalanx
relationship: part_of UBERON:0003622 {source="EMAPA"} ! hand digit 2
relationship: part_of UBERON:0003622 ! hand digit 2
[Term]
id: UBERON:0007730
name: interphalangeal joint of middle finger
synonym: "interphalangeal joint of third digit of hand" EXACT [FMA:35400]
synonym: "interphalangeal joint of third finger" EXACT [FMA:35400]
xref: EMAPA:25064
xref: FMA:35400
is_a: UBERON:0007722 ! interphalangeal joint of finger
relationship: part_of UBERON:0003623
intersection_of: UBERON:0007722 ! interphalangeal joint of finger
intersection_of: part_of UBERON:0003623 ! hand digit 3
relationship: connects UBERON:0003642 {cardinality="2"} ! foot digit 3 phalanx
relationship: part_of UBERON:0003623 ! hand digit 3
[Term]
id: UBERON:0007731
name: interphalangeal joint of ring finger
synonym: "interphalangeal joint of fourth digit of hand" EXACT [FMA:35403]
synonym: "interphalangeal joint of fourth finger" EXACT [FMA:35403]
xref: EMAPA:25067
xref: FMA:35403
is_a: UBERON:0007722 ! interphalangeal joint of finger
relationship: part_of UBERON:0003624
intersection_of: UBERON:0007722 ! interphalangeal joint of finger
intersection_of: part_of UBERON:0003624 ! hand digit 4
relationship: connects UBERON:0003862 {cardinality="2"} ! foot digit 4 phalanx
relationship: part_of UBERON:0003624 ! hand digit 4
[Term]
id: UBERON:0007732
name: interphalangeal joint of little finger
synonym: "interphalangeal joint of fifth digit of hand" EXACT [FMA:35407]
synonym: "interphalangeal joint of fifth finger" EXACT [FMA:35407]
xref: EMAPA:25070
xref: FMA:35407
is_a: UBERON:0007722 ! interphalangeal joint of finger
relationship: part_of UBERON:0003625
intersection_of: UBERON:0007722 ! interphalangeal joint of finger
intersection_of: part_of UBERON:0003625 ! hand digit 5
relationship: connects UBERON:0003863 {cardinality="2"} ! foot digit 5 phalanx
relationship: part_of UBERON:0003625 ! hand digit 5
[Term]
id: UBERON:0007735
name: metacarpophalangeal joint of thumb
synonym: "metacarpophalangeal joint of first digit of hand" EXACT [FMA:35249]
xref: EMAPA:25057
xref: FMA:35249
xref: SCTID:361844001
is_a: UBERON:0003695 ! metacarpophalangeal joint
relationship: connects UBERON:0002374
relationship: connects UBERON:0004338
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0002374 ! metacarpal bone
intersection_of: connects UBERON:0004338 ! proximal phalanx of hand digit 1
relationship: connects UBERON:0002374 ! metacarpal bone
relationship: connects UBERON:0004338 ! proximal phalanx of hand digit 1
relationship: part_of UBERON:0001463 {source="FMA"} ! hand digit 1
[Term]
id: UBERON:0007738
name: metacarpophalangeal joint of index finger
synonym: "metacarpophalangeal joint of second digit of hand" EXACT [FMA:35252]
synonym: "metacarpophalangeal joint of second finger" EXACT [FMA:35252]
xref: EMAPA:25060
xref: FMA:35252
xref: SCTID:361845000
is_a: UBERON:0003695 ! metacarpophalangeal joint
relationship: connects UBERON:0002374
relationship: connects UBERON:0004328
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0002374 ! metacarpal bone
intersection_of: connects UBERON:0004328 ! proximal phalanx of hand digit 2
relationship: connects UBERON:0002374 ! metacarpal bone
relationship: connects UBERON:0004328 ! proximal phalanx of hand digit 2
relationship: part_of UBERON:0003622 {source="FMA"} ! hand digit 2
[Term]
id: UBERON:0007741
name: metacarpophalangeal joint of middle finger
synonym: "metacarpophalangeal joint of third digit of hand" EXACT [FMA:35255]
synonym: "metacarpophalangeal joint of third finger" EXACT [FMA:35255]
xref: EMAPA:25063
xref: FMA:35255
xref: SCTID:361846004
is_a: UBERON:0003695 ! metacarpophalangeal joint
relationship: connects UBERON:0002374
relationship: connects UBERON:0004329
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0002374 ! metacarpal bone
intersection_of: connects UBERON:0004329 ! proximal phalanx of hand digit 3
relationship: connects UBERON:0002374 ! metacarpal bone
relationship: connects UBERON:0004329 ! proximal phalanx of hand digit 3
relationship: part_of UBERON:0003623 {source="FMA"} ! hand digit 3
[Term]
id: UBERON:0007744
name: metacarpophalangeal joint of ring finger
synonym: "metacarpophalangeal joint of fourth digit of hand" EXACT [FMA:35258]
synonym: "metacarpophalangeal joint of fourth finger" EXACT [FMA:35258]
xref: EMAPA:25066
xref: FMA:35258
xref: SCTID:361847008
is_a: UBERON:0003695 ! metacarpophalangeal joint
relationship: connects UBERON:0002374
relationship: connects UBERON:0004330
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0002374 ! metacarpal bone
intersection_of: connects UBERON:0004330 ! proximal phalanx of hand digit 4
relationship: connects UBERON:0002374 ! metacarpal bone
relationship: connects UBERON:0004330 ! proximal phalanx of hand digit 4
relationship: part_of UBERON:0003624 {source="FMA"} ! hand digit 4
[Term]
id: UBERON:0007747
name: metacarpophalangeal joint of little finger
synonym: "metacarpophalangeal joint of fifth digit of hand" EXACT [FMA:35261]
synonym: "metacarpophalangeal joint of fifth finger" EXACT [FMA:35261]
xref: EMAPA:25069
xref: FMA:35261
xref: SCTID:361848003
is_a: UBERON:0003695 ! metacarpophalangeal joint
relationship: connects UBERON:0002374
relationship: connects UBERON:0004331
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0002374 ! metacarpal bone
intersection_of: connects UBERON:0004331 ! proximal phalanx of hand digit 5
relationship: connects UBERON:0002374 ! metacarpal bone
relationship: connects UBERON:0004331 ! proximal phalanx of hand digit 5
relationship: part_of UBERON:0003625 {source="FMA"} ! hand digit 5
[Term]
id: UBERON:0007750
name: metatarsophalangeal joint of big toe
comment: note the name of the structure in EMAPA is incorrect
synonym: "metatarsophalangeal joint of first digit of foot" EXACT [FMA:35228]
synonym: "metatarsophalangeal joint of great toe" EXACT [FMA:35228]
xref: EMAPA:26436
xref: FMA:35228
is_a: UBERON:0003696 ! metatarsophalangeal joint
relationship: connects UBERON:0001448
relationship: connects UBERON:0004315
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001448 ! metatarsal bone
intersection_of: connects UBERON:0004315 ! distal phalanx of foot digit 1
relationship: connects UBERON:0001448 ! metatarsal bone
relationship: connects UBERON:0004315 ! distal phalanx of foot digit 1
relationship: part_of UBERON:0003631 {source="FMA"} ! foot digit 1
[Term]
id: UBERON:0007753
name: metatarsophalangeal joint of second toe
comment: note the name of the structure in EMAPA is incorrect
synonym: "metatarsophalangeal joint of second digit of foot" EXACT [FMA:35231]
xref: EMAPA:26442
xref: FMA:35231
xref: SCTID:361869001
is_a: UBERON:0003696 ! metatarsophalangeal joint
relationship: connects UBERON:0001448
relationship: connects UBERON:0004316
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001448 ! metatarsal bone
intersection_of: connects UBERON:0004316 ! distal phalanx of foot digit 2
relationship: connects UBERON:0001448 ! metatarsal bone
relationship: connects UBERON:0004316 ! distal phalanx of foot digit 2
relationship: part_of UBERON:0003632 {source="FMA"} ! foot digit 2
[Term]
id: UBERON:0007756
name: metatarsophalangeal joint of third toe
comment: note the name of the structure in EMAPA is incorrect
synonym: "metatarsophalangeal joint of third digit of foot" EXACT [FMA:35234]
xref: EMAPA:26460
xref: FMA:35234
xref: SCTID:361870000
is_a: UBERON:0003696 ! metatarsophalangeal joint
relationship: connects UBERON:0001448
relationship: connects UBERON:0004317
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001448 ! metatarsal bone
intersection_of: connects UBERON:0004317 ! distal phalanx of foot digit 3
relationship: connects UBERON:0001448 ! metatarsal bone
relationship: connects UBERON:0004317 ! distal phalanx of foot digit 3
relationship: part_of UBERON:0003633 {source="FMA"} ! foot digit 3
[Term]
id: UBERON:0007759
name: metatarsophalangeal joint of fourth toe
comment: note the name of the structure in EMAPA is incorrect
synonym: "metatarsophalangeal joint of fourth digit of foot" EXACT [FMA:35237]
xref: EMAPA:26472
xref: FMA:35237
xref: SCTID:361871001
is_a: UBERON:0003696 ! metatarsophalangeal joint
relationship: connects UBERON:0001448
relationship: connects UBERON:0004318
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001448 ! metatarsal bone
intersection_of: connects UBERON:0004318 ! distal phalanx of foot digit 4
relationship: connects UBERON:0001448 ! metatarsal bone
relationship: connects UBERON:0004318 ! distal phalanx of foot digit 4
relationship: part_of UBERON:0003634 {source="FMA"} ! foot digit 4
[Term]
id: UBERON:0007762
name: metatarsophalangeal joint of little toe
comment: note the name of the structure in EMAPA is incorrect
synonym: "metatarsophalangeal joint of fifth digit of foot" EXACT [FMA:35240]
synonym: "metatarsophalangeal joint of fifth toe" EXACT [FMA:35240]
xref: EMAPA:26484
xref: FMA:35240
xref: SCTID:361872008
is_a: UBERON:0003696 ! metatarsophalangeal joint
relationship: connects UBERON:0001448
relationship: connects UBERON:0004319
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001448 ! metatarsal bone
intersection_of: connects UBERON:0004319 ! distal phalanx of foot digit 5
relationship: connects UBERON:0001448 ! metatarsal bone
relationship: connects UBERON:0004319 ! distal phalanx of foot digit 5
relationship: part_of UBERON:0003635 {source="FMA"} ! foot digit 5
[Term]
id: UBERON:0007763
name: cerebellum culmen
comment: ABA splits culmen into IV and V and IV-V
synonym: "culmen" BROAD [MA:0001001, NIF_GrossAnatomy:birnlex_926]
synonym: "neuraxis culmen" EXACT [FMA:83886]
xref: ABA:CUL
xref: FMA:83886
xref: NIF_GrossAnatomy:birnlex_926
xref: SCTID:279384001
is_a: UBERON:0004070 {source="ABA"} ! cerebellum vermis lobule
relationship: part_of UBERON:0003941 {source="FMA"} ! cerebellum anterior vermis
[Term]
id: UBERON:0007764
name: paramedian reticular nucleus
def: "The paramedian reticular nucleus (in Terminologia Anatomica, or paramedian medullary reticular group in NeuroNames) sends its connections to the spinal cord in a mostly ipsilateral manner, although there is some decussation. It projects to the vermis in the anterior lobe, the pyramis and the uvula. The paramedian nucleus also projects to the contralateral PRN, the gigantocellular nucleus, and the nucleus ambiguous. The paramedian reticular formation is adjacent to the abducens (VI)nucleus in the pons and adjacent to the oculomotor nucleus(III) in the midbrain. The paramedian nucleus receives afferents mostly from the fastigial nucleus in the cerebellum and the cerebral cortex; however, the projections from the spinal cord are very sparse. The descending afferent connections come mostly from the frontal and parietal lobes; however the pontine reticular formation also sends projections to the paramedian reticular nucleus. There are also very sparse innervations from the superior colliculus. Lesions in the paramedian reticular nucleus have been shown to cause a stereotyped increase in the random patterns of motion in rats. The paramedian nuclei on either side of the brain stem have been shown to mediate the horizontal eye movements on their ipsilateral sides. It seems possible that that the random motion patterns of the above rats were caused by an inability to mediate their horizontal eye movements." [Wikipedia:Paramedian_reticular_nucleus]
comment: todo - check
synonym: "nucleus reticularis paramedianus" RELATED [Wikipedia:Paramedian_reticular_nucleus]
synonym: "paramedian nucleus reticularis" RELATED LATIN [Wikipedia:Paramedian_reticular_nucleus]
synonym: "ventral paramedian reticular nucleus" EXACT [FMA:72583]
xref: ABA:PMR
xref: FMA:72583
is_a: UBERON:0007635 {source="FMA"} ! nucleus of medulla oblongata
[Term]
id: UBERON:0007767
name: dorsal premammillary nucleus
xref: ABA:PMd
xref: FMA:77006
property_value: "spatially_disjoint_from" UBERON:0002035
property_value: "spatially_disjoint_from" UBERON:0002206
property_value: "spatially_disjoint_from" UBERON:0002634
property_value: "spatially_disjoint_from" UBERON:0002706
property_value: "spatially_disjoint_from" UBERON:0007768
is_a: UBERON:0002712 ! premammillary nucleus
[Term]
id: UBERON:0007768
name: ventral premammillary nucleus
xref: ABA:PMv
xref: FMA:77007
property_value: "spatially_disjoint_from" UBERON:0002035
property_value: "spatially_disjoint_from" UBERON:0002206
property_value: "spatially_disjoint_from" UBERON:0002634
property_value: "spatially_disjoint_from" UBERON:0002706
property_value: "spatially_disjoint_from" UBERON:0007767
is_a: UBERON:0002712 ! premammillary nucleus
[Term]
id: UBERON:0007769
name: medial preoptic region
synonym: "medial preoptic area" EXACT [ABA:MPO]
xref: ABA:MPO
xref: MA:0000839
is_a: UBERON:0003048 ! regional part of hypothalamus
relationship: part_of UBERON:0001928 ! preoptic area
relationship: part_of UBERON:0002272 {source="MA"} ! medial zone of hypothalamus
[Term]
id: UBERON:0007770
name: osphradium
def: "The osphradium is the olfactory organ in certain molluscs, linked with the respiration organ. The main function of this is to test incoming water for silt and other possible food particles. It is used by all members of the Genus Conus." [BTO:0004995, Wikipedia:Osphradium]
subset: organ_slim
xref: BTO:0004995
is_a: UBERON:0002268 {source="BTO"} ! olfactory organ
[Term]
id: UBERON:0007771
name: epidermis gland
subset: organ_slim
synonym: "gland of epidermis" EXACT [FMA:59153]
xref: FMA:59153
is_a: UBERON:0002419 ! skin gland
relationship: part_of UBERON:0001003
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001003 ! epidermis
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0007772
name: scrotal sweat
synonym: "sweat of scrotum" EXACT [FMA:73266]
xref: FMA:73266
is_a: UBERON:0001089 {source="FMA"} ! sweat
relationship: secreted_by UBERON:0007773
intersection_of: UBERON:0001089 ! sweat
intersection_of: secreted_by UBERON:0007773 ! scrotal sweat gland
relationship: secreted_by UBERON:0007773 ! scrotal sweat gland
[Term]
id: UBERON:0007773
name: scrotal sweat gland
subset: organ_slim
xref: EMAPA:29743
is_a: UBERON:0001820 ! sweat gland
is_a: UBERON:0005399 ! male reproductive gland
relationship: part_of UBERON:0001300
intersection_of: UBERON:0001820 ! sweat gland
intersection_of: part_of UBERON:0001300 ! scrotum
relationship: part_of UBERON:0001300 ! scrotum
[Term]
id: UBERON:0007774
name: secondary dentition
def: "The teeth of adulthood that either replace or are added to the complement of deciduous teeth. (Boucher's Clinical Dental Terminology, 4th ed)" [MESH:A.14.254.237]
synonym: "adult dentition" RELATED [GAID:1251]
synonym: "dentes permanentes" EXACT [FMA:75152, FMA:TA]
synonym: "permanent dentition" EXACT [GAID:1251]
synonym: "permanent teeth" EXACT [FMA:75152]
synonym: "secondary dentition" RELATED [GAID:1251]
synonym: "set of permanent teeth" EXACT [FMA:75152]
synonym: "set of secondary teeth" EXACT [FMA:75152]
xref: FMA:75152
xref: GAID:1251
xref: MESH:A.14.254.237
is_a: UBERON:0003672 {source="FMA"} ! dentition
relationship: developmentally_replaces UBERON:0007116
intersection_of: UBERON:0003672 ! dentition
intersection_of: developmentally_replaces UBERON:0007116 ! primary dentition
relationship: developmentally_replaces UBERON:0007116 ! primary dentition
[Term]
id: UBERON:0007775
name: secondary tooth
def: "Permanent teeth are the second set of teeth formed in humans[WP]." [Wikipedia:Permanent_teeth]
comment: GAT in FMA
synonym: "dentes permanentes" RELATED LATIN [Wikipedia:Permanent_teeth]
synonym: "permanent tooth" EXACT [FMA:55654]
xref: FMA:55654
xref: http://upload.wikimedia.org/wikipedia/commons/1/14/Teeth_by_David_Shankbone.jpg
xref: ncithesaurus:Permanent_Tooth
xref: SCTID:245563006
is_a: UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0007774
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0007774 ! secondary dentition
relationship: part_of UBERON:0007774 ! secondary dentition
[Term]
id: UBERON:0007776
name: unerupted tooth
def: "A normal developing tooth which has not yet perforated the oral mucosa or one that fails to erupt in the normal sequence or time interval expected for the type of tooth in a given gender, age, or population group." [MESH:A.14.254.860.715]
synonym: "unerupted teeth" RELATED [GAID:1268]
xref: GAID:1268
xref: MESH:A.14.254.860.715
is_a: UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0007777
name: umbilical vein endothelium
xref: BTO:0001416
is_a: UBERON:0001919 ! endothelium of vein
relationship: part_of UBERON:0002066
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0002066 ! umbilical vein
relationship: part_of UBERON:0002066 {source="BTO"} ! umbilical vein
relationship: part_of UBERON:0002066 ! umbilical vein
[Term]
id: UBERON:0007778
name: umbilical artery endothelium
xref: BTO:0000857
is_a: UBERON:0001917 ! endothelium of artery
relationship: part_of UBERON:0001310
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001310 ! umbilical artery
relationship: part_of UBERON:0001310 {source="BTO"} ! umbilical artery
relationship: part_of UBERON:0001310 ! umbilical artery
[Term]
id: UBERON:0007779
name: transudate
def: "Body substance in liquid state, which is derived from plasma by passage through the (intact) wall of capillaries without further processing by secretory cells or glands." [FMA:12276]
xref: FMA:12276
xref: GAID:1195
xref: MESH:A.12.383
xref: ncithesaurus:Transudate
is_a: UBERON:0006314 ! bodily fluid
[Term]
id: UBERON:0007780
name: exudate
def: "Exudates are fluids, cells, or other cellular substances that are slowly discharged from blood vessels usually from inflamed tissues." [MESH:A.12.383]
synonym: "transudates and exudate" RELATED [GAID:1195]
xref: MESH:A.12.383
xref: ncithesaurus:Exudate
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0007793
name: labyrinthine fluid
def: "Fluids found within the osseous labyrinth (PERILYMPH) and the membranous labyrinth (ENDOLYMPH) of the inner ear. (From Gray's Anatomy, 30th American ed, p1328, 1332)" [MESH:A.12.207.571]
synonym: "labyrinthine fluid" RELATED [MESH:A.12.207.571]
xref: GAID:1183
xref: MESH:A.12.207.571
is_a: UBERON:0006314 {source="MESH"} ! bodily fluid
[Term]
id: UBERON:0007794
name: serous fluid
def: "Transudate contained in a serous sac." [FMA:20932]
xref: FMA:20932
is_a: UBERON:0007779 {source="FMA"} ! transudate
[Term]
id: UBERON:0007795
name: ascitic fluid
def: "The serous fluid which accumulates in the peritoneal cavity in ascites." [MESH:A.12.207.119]
comment: todo - move to pathological anatomical entity ontology
synonym: "ascites" RELATED [BTO:0000091]
synonym: "ascites fluid" RELATED [BTO:0000091]
xref: BTO:0000091
xref: GAID:1175
xref: MESH:A.12.207.119
is_a: UBERON:0001268 ! peritoneal fluid
relationship: part_of UBERON:0000916 {source="BTO"} ! abdomen
[Term]
id: UBERON:0007798
name: vascular system
comment: in both MA and BTO, the arterial system and venous sytem are subtypes of the vascular system
xref: BTO:0001085
xref: EHDAA2:0004520
xref: MA:0002718
xref: ncithesaurus:Vascular_System
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0004535 {source="MA"} ! cardiovascular system
[Term]
id: UBERON:0007799
name: mixed dentition
def: "The complement of teeth in the jaws after the eruption of some of the permanent teeth but before all the deciduous teeth are absent. (Boucher's Clinical Dental Terminology, 4th ed)" [MESH:A.14.254.229]
synonym: "transitional dentition" EXACT [GAID:1250]
xref: GAID:1250
xref: MESH:A.14.254.229
xref: SCTID:245545006
is_a: UBERON:0003672 {source="GAID"} ! dentition
[Term]
id: UBERON:0007800
name: proatlas
def: "a small, paired bony element (more rarely, having fused parts) located between the skull and the atlas in tuataras, crocodiles, chameleons, and many fossil reptiles; it is uncommon in turtles and mammals (hedgehog). The proatlas apparently develops from the ossified neural part of the sclerotome. Externally it resembles the neural arch of the vertebra, since it articulates anteriorly with the lateral occipital bone and posteriorly with the anterior articular process of the atlas." [http://encyclopedia2.thefreedictionary.com/Proatlas]
comment: Variation notes: sometimes seen in humans as an anomaly.
is_a: UBERON:0002413 ! cervical vertebra
relationship: anterior_to UBERON:0001092 ! first cervical vertebra
[Term]
id: UBERON:0007801
name: pygostyle
def: "Pygostyle refers to a number of the final few caudal vertebrae fused into a single ossification, supporting the tail feathers and musculature. In modern birds, the rectrices attach to these[WP]." [Wikipedia:Pygostyle]
subset: organ_slim
xref: http://people.eku.edu/ritchisong/birdskeleton.gif
xref: SCTID:416894001
is_a: UBERON:0001474 ! bone
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0007802
name: uropygial gland
def: "A large gland at the base of a bird's tail that secretes an oil used in preening." [BTO:0001420, Wikipedia:Uropygial_gland]
comment: The gland is found near the base of the tail and is shaped into two symmetric parts. The oil of each part of the gland is secreted through the surface of the skin through a grease nipple-like nub. A bird will typically transfer this oil to its feathers by rubbing its head against the oil and then around the rest of the body. Tailward areas are usually preened utilizing the beak. Not all birds have a uropygial gland. Exceptions include the emu, ostrich, and bustards. These typically find other means to stay clean and dry, such as taking a dust bath
subset: organ_slim
synonym: "oil gland" RELATED [BTO:0001420]
xref: BTO:0001420
xref: SCTID:48626006
is_a: UBERON:0002365 {source="BTO"} ! exocrine gland
relationship: secretes UBERON:0007803
intersection_of: UBERON:0002365 ! exocrine gland
intersection_of: secretes UBERON:0007803 ! preen oil
relationship: part_of UBERON:0002415 {source="BTO"} ! tail
relationship: secretes UBERON:0007803 ! preen oil
[Term]
id: UBERON:0007803
name: preen oil
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0007804
name: sclerotic ring
def: "Sclerotic rings are rings of bone found in the eyes of several groups of vertebrate animals, except for mammals and crocodilians. They can be made up of single bones or small bones together. They are believed to have a role in supporting the eye, especially in animals whose eyes are not spherical, or which live underwater. Fossil sclerotic rings are known for a variety of extinct animals, including ichthyosaurs, pterosaurs, and dinosaurs, but are often not preserved[WP]." [Wikipedia:Sclerotic_ring]
synonym: "scleral ring" EXACT [Wikipedia:Sclerotic_ring]
property_value: RO:0002161 NCBITaxon:40674
is_a: UBERON:0010290 {source="PMID:17051547"} ! scleral ossicle
relationship: part_of UBERON:0001697 ! orbital region
[Term]
id: UBERON:0007805
name: synsacrum
def: "The synsacrum is a skeletal structure, mainly described in birds and dinosaurs, in which the sacrum is extended by incorporation of additional fused or partially-fused caudal or lumbar vertebrae. The ilium of the pelvis is attached to the synsacrum and, in some species, may also be fused to it. Together with the pelvis this forms a rigid structure which carries the weight of the hind end of the animal. In living and some prehistoric birds, posterior to the synsacrum there are usually only a few free caudal vertebrae, on the end of which lies the pygostyle[WP]. Complex of synostotically fused vertebrae supporting the pelvic girdle. In anurans, the synsacrum is formed by two vertebrae and the urostyle is fused to its posterior end[AAO]." [AAO:Pugener_2002, Wikipedia:Synsacrum]
comment: produced by fusion of last thoracics, all lumbars, all sacrals, & first few caudals;
xref: AAO:0000740
xref: http://people.eku.edu/ritchisong/birdskeleton.gif
xref: SCTID:67943001
property_value: UBPROP:0000001 "Complex of synostotically fused vertebrae supporting the pelvic girdle. In anurans, the synsacrum is formed by two vertebrae and the urostyle is fused to its posterior end.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass portion of (AAO:0010428)[AAO]" xsd:string
is_a: UBERON:0003828 ! abdominal segment bone
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0005179 ! pelvis organ
relationship: part_of UBERON:0006075 {source="AAO"} ! sacral region of vertebral column
[Term]
id: UBERON:0007806
name: connecting stalk
def: "A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/]
comment: todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels
xref: BTO:0004705
xref: ncithesaurus:Connecting_Stalk
is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0005728 {source="EHDAA2"} ! extraembryonic mesoderm
[Term]
id: UBERON:0007807
name: connecting stalk blood vessels
xref: EHDAA2:0000313
is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0007806 ! connecting stalk
[Term]
id: UBERON:0007808
name: abdominal adipose tissue
def: "Adipose tissue located inside the peritoneal cavity, packed in between internal organs and torso. An excess of visceral fat is known as central obesity, or belly fat, the pot belly or beer belly effect, in which the abdomen protrudes excessively." [BTO:0004041]
synonym: "abdominal fat" RELATED [BTO:0004041]
synonym: "intra-abdominal fat" RELATED [BTO:0004041]
synonym: "organ fat" RELATED [BTO:0004041]
synonym: "visceral adipose tissue" RELATED [BTO:0004041]
synonym: "visceral fat" RELATED [BTO:0004041]
xref: BTO:0004041
is_a: UBERON:0001013 {source="BTO"} ! adipose tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001179 {source="BTO"} ! peritoneal cavity
[Term]
id: UBERON:0007809
name: fascia of Camper
def: "The superficial layer (fascia of Camper) is a thick superficial layer of the anterior abdominal wall. It is areolar in texture, and contains in its meshes a varying quantity of adipose tissue. It is found superficial to Scarpa's fascia. ." [Wikipedia:Fascia_of_Camper]
synonym: "adipose layer of superficial fascia of abdomen" EXACT [FMA:19922]
synonym: "Camper's fascia" EXACT [Wikipedia:Fascia_of_Camper]
synonym: "camper's fascia" EXACT [FMA:19922]
synonym: "fascia investiens intermedia abdominis" EXACT [FMA:19922, FMA:TA]
synonym: "fatty layer of subcutaneous tissue of abdomen" EXACT [FMA:19922]
synonym: "fatty layer of superficial fascia of abdomen" EXACT [FMA:19922]
synonym: "intermediate investing fascia of abdomen" EXACT [FMA:19922]
synonym: "panniculus adiposus abdominis" RELATED LATIN [Wikipedia:Fascia_of_Camper]
synonym: "panniculus adiposus telae subcutaneae abdominis" EXACT [FMA:19922, FMA:TA]
synonym: "superficial layer of superficial fascia of abdomen" EXACT [FMA:19922]
xref: FMA:19922
xref: http://upload.wikimedia.org/wikipedia/commons/2/28/Gray393.png
is_a: UBERON:0001013 {source="Wikipedia"} ! adipose tissue
is_a: UBERON:0003567 ! abdomen connective tissue
relationship: part_of UBERON:0006635 {source="FMA"} ! anterior abdominal wall
[Term]
id: UBERON:0007811
name: craniocervical region
def: "The anteriormost subdivision of the body that includes the head and the neck (if present). In vertebrates this is the subdivision that includes the cervical vertebrae." [UBERON:cjm]
synonym: "head and neck" EXACT [FMA:280881]
synonym: "head or neck" RELATED []
xref: EV:0100009
xref: FMA:280881
xref: galen:HeadAndNeck
xref: MA:0000006
xref: ncithesaurus:Head_and_Neck
xref: SCTID:361355005
is_a: UBERON:0000475 {source="MA"} ! organism subdivision
relationship: has_part UBERON:0000033 ! head
relationship: has_part UBERON:0000974 {gci_relation="part_of", gci_filler="NCBITaxon:32523"} ! neck
relationship: part_of UBERON:0000153 ! anterior region of body
[Term]
id: UBERON:0007812
name: post-anal tail
def: "a tail that extends from the posterior tip of the organism to the anus, contains muscle and skeleton." [UBERON:cjm]
comment: Taxon notes: present at some time in chordate life history (eg in Urochordates, present only in free-swimming larvae). Function: propellor locomotion (in some species)
subset: vertebrate_core
synonym: "muscular postanal tail" EXACT []
synonym: "postanal tail" EXACT []
xref: AAO:0010338
xref: EHDAA2:0003109
xref: MA:0000008
xref: ncithesaurus:Tail
xref: TAO:0001117
xref: XAO:0003026
xref: ZFA:0001117
property_value: UBPROP:0000001 "Anatomical structure that is the terminal, flexible posterior appendage of the organism.[AAO]" xsd:string
property_value: UBPROP:0000001 "Organism subdivision which is the part of the body posterior to the vent which includes the anal and caudal fins.[TAO]" xsd:string
is_a: UBERON:0002415 ! tail
relationship: develops_from UBERON:0002533 ! tail bud
[Term]
id: UBERON:0007818
name: major alar cartilage
def: "The greater alar cartilage (lower lateral cartilage) is a thin, flexible plate, situated immediately below the preceding, and bent upon itself in such a manner as to form the medial wall and lateral wall of the naris of its own side. The portion which forms the medial wall (crus mediale) is loosely connected with the corresponding portion of the opposite cartilage, the two forming, together with the thickened integument and subjacent tissue, the septum mobile nasi. The part which forms the lateral wall (crus laterale) is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages (cartilagines alares minores; sesamoid cartilages). Above, it is connected by fibrous tissue to the lateral cartilage and front part of the cartilage of the septum; below, it falls short of the margin of the naris, the ala being completed by fatty and fibrous tissue covered by skin. In front, the greater alar cartilages are separated by a notch which corresponds with the apex of the nose." [Wikipedia:Greater_alar_cartilage]
synonym: "cartilago alaris major" EXACT [FMA:59504]
synonym: "cartilago alaris major" RELATED LATIN [Wikipedia:Greater_alar_cartilage]
synonym: "greater alar cartilage" EXACT [FMA:59504]
xref: FMA:59504
xref: http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png
xref: SCTID:361928006
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage
[Term]
id: UBERON:0007819
name: minor alar cartilage
def: "The part which forms the lateral wall is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages." [Wikipedia:Lesser_alar_cartilages]
synonym: "cartilago alaris minor" RELATED LATIN [Wikipedia:Lesser_alar_cartilages]
synonym: "lesser alar cartilage" EXACT [FMA:59507]
xref: FMA:59507
xref: http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage
[Term]
id: UBERON:0007820
name: accessory nasal cartilage
xref: FMA:59510
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage
[Term]
id: UBERON:0007821
name: lateral nasal cartilage
def: "The lateral cartilage (upper lateral cartilage) is situated below the inferior margin of the nasal bone, and is flattened, and triangular in shape.[WP]." [Wikipedia:Lateral_nasal_cartilage]
synonym: "cartilago nasi lateralis" RELATED LATIN [Wikipedia:Lateral_nasal_cartilage]
xref: FMA:59511
xref: http://upload.wikimedia.org/wikipedia/commons/e/e1/Gray852.png
xref: SCTID:278944009
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage
[Term]
id: UBERON:0007822
name: vomeronasal cartilage
def: "The vomeronasal cartilage (or Jacobson's cartilage) is a narrow strip of cartilage, low on the medial wall of the nasal cavity. It lies between the cartilaginous nasal septum and the vomer. The cartilage lies below, but is not connected to, the rudimentary vomeronasal organ of Jacobson. Ludwig Levin Jacobson (1783-1843), a Danish anatomist, named this structure in 1809." [Wikipedia:Vomeronasal_cartilage]
synonym: "cartilago vomeronasalis" RELATED LATIN [Wikipedia:Vomeronasal_cartilage]
synonym: "Huschke's cartilage" EXACT [FMA:59514]
synonym: "Jacobson's cartilage" EXACT [FMA:59514]
xref: FMA:59514
xref: http://upload.wikimedia.org/wikipedia/commons/8/84/Gray51.png
xref: SCTID:368123006
is_a: UBERON:0001823 {source="FMA"} ! nasal cartilage
[Term]
id: UBERON:0007823
name: appendage girdle region
alt_id: UBERON:0007824
def: "An organism subdivision that encompasses the region containing the pectoral or pelvic girdle. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [UBERON:cjm, UBERONREF:0000003]
comment: Note that this encompasses non-skeletal tissue
synonym: "fin girdle" RELATED SENSU []
synonym: "fin girdle region" RELATED SENSU []
synonym: "girdle" BROAD []
synonym: "girdle region" BROAD []
synonym: "limb girdle" RELATED SENSU []
synonym: "limb girdle region" RELATED SENSU []
xref: FMA:24874
xref: VSAO:0000303
property_value: "spatially_disjoint_from" UBERON:0004708
property_value: UBPROP:0000001 "An organism subdivision that encompasses the region containing the pectoral or pelvic girdle. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc). There are only two instances of appendage girdle regions per organism.[VSAO]" xsd:string
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0010707 ! appendage girdle complex
[Term]
id: UBERON:0007825
name: reticular membrane of spiral organ
synonym: "reticular lamina" BROAD [MA:0001194]
synonym: "reticular lamina of spiral organ" EXACT [Obol:automatic]
synonym: "reticular lamina of spiral organ of cochlea" EXACT [Obol:automatic]
xref: FMA:77849
xref: MA:0001194
is_a: UBERON:0001967 {source="Obol"} ! reticular lamina
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002227 {source="MA"} ! spiral organ of cochlea
[Term]
id: UBERON:0007826
name: peritoneal mesentery
def: "A double layer composed of peritoneum that attaches the visceral organs to the body wall." [ZFIN:curator]
xref: FMA:20570
xref: TAO:0005129
xref: XAO:0000138
xref: ZFA:0005129
is_a: UBERON:0002095 ! mesentery
relationship: part_of UBERON:0002358
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0002358 ! peritoneum
relationship: part_of UBERON:0001178 {source="FMA"} ! visceral peritoneum
relationship: part_of UBERON:0002358 {source="ZFA"} ! peritoneum
relationship: part_of UBERON:0002358 ! peritoneum
[Term]
id: UBERON:0007827
name: external nose
def: "Subdivision of face, the exterior of the nose, which consists of a root, dorsum, tip, columella, and right and left alae." [FMA:59515]
synonym: "nose" RELATED []
xref: FMA:59515
xref: ncithesaurus:External_Nose
xref: SCTID:265785009
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000004 {source="FMA"} ! olfactory apparatus
[Term]
id: UBERON:0007828
name: girdle bone/zone
synonym: "girdle bone" EXACT [MA:0000291]
xref: MA:0000291
is_a: UBERON:0010740 ! bone of appendage girdle complex
relationship: part_of UBERON:0007823
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0007823 ! appendage girdle region
relationship: part_of UBERON:0007823 ! appendage girdle region
relationship: part_of UBERON:0010719 ! girdle skeleton
[Term]
id: UBERON:0007829
name: pectoral girdle bone
subset: vertebrate_core
synonym: "bone of pectoral girdle" EXACT []
xref: MA:0000292
is_a: UBERON:0007828 {source="MA"} ! girdle bone/zone
is_a: UBERON:0010741 ! bone of pectoral complex
relationship: part_of UBERON:0001421
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle
[Term]
id: UBERON:0007830
name: pelvic girdle bone/zone
comment: typically the ilium, ischium and pubis. These can alternately be considered individual bones, or zones of a single fused bone. Editor note: check sacrum, coccyx (MA does NOT include these)
subset: vertebrate_core
synonym: "pelvic girdle bone" EXACT [MA:0000293]
xref: MA:0000293
xref: SCTID:426214007
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0007828 {source="MA"} ! girdle bone/zone
is_a: UBERON:0010742 ! bone of pelvic complex
relationship: part_of UBERON:0007832
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0007832 ! skeleton of pelvic girdle
relationship: part_of UBERON:0007832 ! skeleton of pelvic girdle
[Term]
id: UBERON:0007831
name: skeleton of pectoral girdle
def: "A subdivision of a limb or fin skeleton consisting of bones which connects the upper limb or fin to the axial skeleton on each side. It consists of the clavicle and scapula in humans and, in those species with three bones in the pectoral girdle, the coracoid. Some mammalian species (e.g. the dog and the horse) have only the scapula. In humans, the only joints between the shoulder girdle and axial skeleton are the sternoclavicular joints on each side. No joint exists between each scapula and the rib cage; instead the muscular connection between the two permits relatively great mobility of the shoulder girdle in relation to the pelvic girdle. In those species having only the scapula, no joint exists between the forelimb and the thorax, the only attachment being muscular[WP]. Examples: There are only two instances, right and left pectoral girdle skeletons." [Wikipedia:Pectoral_girdle]
comment: AO notes: Note that the VSAO and many ontologies use the label 'pectoral girdle' to denote the skeletal region specifically.
subset: vertebrate_core
synonym: "cingulum pectorale" RELATED LATIN [Wikipedia:Pectoral_girdle]
synonym: "pectoral girdle" RELATED INCONSISTENT [VSAO:0000156]
synonym: "pectoral girdle skeleton" EXACT [FMA:24141]
xref: AAO:0000422
xref: AAO:0000754
xref: EFO:0000946
xref: EHDAA2:0001420
xref: EMAPA:18025
xref: FMA:24141
xref: http://upload.wikimedia.org/wikipedia/commons/2/22/Pectoral_girdle_front_diagram.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Pectoral_girdle_front_diagram.svg/200px-Pectoral_girdle_front_diagram.svg.png
xref: MAT:0000181
xref: MIAA:0000181
xref: ncithesaurus:Shoulder_Girdle
xref: TAO:0000407
xref: VHOG:0001156
xref: VSAO:0000156
xref: XAO:0003063
xref: ZFA:0000407
property_value: UBPROP:0000001 "Anatomical cluster of paired dermal and endochondral bones that attaches to the dorso-posterior part of the cranium, and support the radials and pectoral fin. It consists of two components: the primary pectoral girdle consisting of the endochondral coracoid, scapula and mesocoracoid bones, and the secondary pectoral girdle consisting of the dermal posttemporal, supracleithrum, cleithrum and poscleithrum(thra) bones.[TAO]" xsd:string
property_value: UBPROP:0000001 "Girdle skeleton consisting of a set of bones linking the axial series to the forelimb/fin skeleton and offering anchoring areas for forelimb/fin and caudal musculature.[VSAO]" xsd:string
property_value: UBPROP:0000001 "Skeletal structure immediately behind the head attached to the vertebral column by muscles and supporting the forelimbs.[AAO]" xsd:string
is_a: UBERON:0010719 ! girdle skeleton
relationship: part_of UBERON:0001421
relationship: subdivision_of UBERON:0001421
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: part_of UBERON:0001421 ! pectoral girdle region
intersection_of: subdivision_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0002091 {source="XAO"} ! entire appendicular skeleton
relationship: subdivision_of UBERON:0001421 ! pectoral girdle region
[Term]
id: UBERON:0007832
name: skeleton of pelvic girdle
def: "Skeletal subdivision consisting of a set of bones linking the axial series to the hindlimb zeugopodium and offering anchoring areas for hindlimb and caudal musculature." [VSAO:0000155, Wikipedia:Pelvis]
comment: AO notes: Note that the VSAO and many ontologies use the label 'pelvic girdle' to denote the skeletal region specifically. We place the EHDAA2 class here, note that this includes the pre-cartilage condensation as parts. Editor notes: need to resolve whether this is a paired structure or a single belt (Paired in FMA - implicitly paired in VSAO)
subset: vertebrate_core
synonym: "pelvic girdle" RELATED INCONSISTENT [VSAO:0000155]
synonym: "pelvic girdle skeleton" EXACT [VSAO:0000155]
xref: AAO:0000426
xref: AAO:0000768
xref: EFO:0000947
xref: EHDAA2:0001426
xref: EHDAA:7149
xref: EHDAA:8324
xref: EMAPA:18028
xref: FMA:87592
xref: galen:PelvicGirdle
xref: http://people.eku.edu/ritchisong/pectoralgirdles.gif
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray242.png/200px-Gray242.png
xref: MAT:0000182
xref: MIAA:0000182
xref: TAO:0000565
xref: VHOG:0000305
xref: VSAO:0000155
xref: XAO:0003064
xref: ZFA:0000565
property_value: UBPROP:0000001 "Anatomical cluster by which the hind limbs are supported and attached to the vertebral column.[AAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical cluster that consists of the paired basipterygia which support the pelvic fin.[TAO]" xsd:string
property_value: UBPROP:0000001 "Girdle skeleton consisting of a set of bones linking the axial series to the hindlimb/fin skeleton and offering anchoring areas for hindlimb/fin and caudal musculature.[VSAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010719 ! girdle skeleton
relationship: part_of UBERON:0001271
relationship: subdivision_of UBERON:0001271
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: part_of UBERON:0001271 ! pelvic girdle region
intersection_of: subdivision_of UBERON:0001271 ! pelvic girdle region
relationship: develops_from UBERON:0010377 {source="PMID:21455939"} ! mesenchyme from somatopleure
relationship: part_of UBERON:0001271 ! pelvic girdle region
relationship: part_of UBERON:0002091 {source="XAO"} ! entire appendicular skeleton
relationship: subdivision_of UBERON:0001271 ! pelvic girdle region
[Term]
id: UBERON:0007833
name: osseus semicircular canal
comment: consider adding FMA:60186
synonym: "osseous semicircular canal" EXACT [Obol:automatic]
xref: MA:0000250
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005913 {notes="checkme"} ! zone of bone organ
is_a: UBERON:0006585 ! vestibular organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001839 {source="MA"} ! bony labyrinth
relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal
[Term]
id: UBERON:0007834
name: lumbar spinal cord ventral commissure
synonym: "lumbar spinal cord anterior commissure" EXACT [NIF_GrossAnatomy:birnlex_1326]
xref: NIF_GrossAnatomy:birnlex_1326
is_a: UBERON:0004170 ! spinal cord ventral commissure
relationship: part_of UBERON:0002792
intersection_of: UBERON:0004170 ! spinal cord ventral commissure
intersection_of: part_of UBERON:0002792 ! lumbar spinal cord
relationship: part_of UBERON:0002792 ! lumbar spinal cord
[Term]
id: UBERON:0007835
name: sacral spinal cord ventral commissure
synonym: "sacral spinal cord anterior commissure" EXACT [NIF_GrossAnatomy:birnlex_1528]
xref: NIF_GrossAnatomy:birnlex_1528
is_a: UBERON:0004170 ! spinal cord ventral commissure
relationship: part_of UBERON:0005843
intersection_of: UBERON:0004170 ! spinal cord ventral commissure
intersection_of: part_of UBERON:0005843 ! sacral spinal cord
relationship: part_of UBERON:0005843 ! sacral spinal cord
[Term]
id: UBERON:0007836
name: cervical spinal cord ventral commissure
synonym: "cervical spinal cord anterior commissure" EXACT [NIF_GrossAnatomy:birnlex_1552]
xref: NIF_GrossAnatomy:birnlex_1552
is_a: UBERON:0004170 ! spinal cord ventral commissure
relationship: part_of UBERON:0002726
intersection_of: UBERON:0004170 ! spinal cord ventral commissure
intersection_of: part_of UBERON:0002726 ! cervical spinal cord
relationship: part_of UBERON:0002726 ! cervical spinal cord
[Term]
id: UBERON:0007837
name: thoracic spinal cord ventral commissure
synonym: "thoracic spinal cord anterior commissure" EXACT [NIF_GrossAnatomy:birnlex_1556]
xref: NIF_GrossAnatomy:birnlex_1556
is_a: UBERON:0004170 ! spinal cord ventral commissure
relationship: part_of UBERON:0003038
intersection_of: UBERON:0004170 ! spinal cord ventral commissure
intersection_of: part_of UBERON:0003038 ! thoracic spinal cord
relationship: part_of UBERON:0003038 ! thoracic spinal cord
[Term]
id: UBERON:0007838
name: spinal cord white commissure
synonym: "white commissure of spinal cord" EXACT [FMA:77033]
xref: FMA:77033
xref: SCTID:423957000
is_a: UBERON:0008882 ! spinal cord commissure
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0007840
name: spinal cord dorsal white commissure
synonym: "commissura alba posterior medullae spinalis" EXACT [FMA:77034, FMA:TA]
synonym: "dorsal white commissure of spinal cord" EXACT [FMA:77034]
synonym: "posterior white commissure of spinal cord" EXACT [FMA:77034]
xref: FMA:77034
xref: SCTID:424400007
is_a: UBERON:0007838 {source="FMA"} ! spinal cord white commissure
[Term]
id: UBERON:0007841
name: furcula
def: "a forked bone found in birds, formed by the fusion of the two clavicles. In birds, its function is the strengthening of the thoracic skeleton to withstand the rigors of flight." [Wikipedia:Furcula]
comment: The following theropods have been found to have furculae: dromaeosaurids (including a new North American species of Velociraptor), Oviraptorids, Tyrannosaurids, Troodontids, Coelophysids and Allosauroids. Editor notes: currently assigned to be part of the pectoral girdle, but this may be incorrect if PG is a paired structure
synonym: "furcula bone" RELATED []
synonym: "fused clavicle" RELATED []
synonym: "wishbone" RELATED [Wikipedia:Furcula]
property_value: "has_fused_element" UBERON:0008255
property_value: "has_fused_element" UBERON:0008256
property_value: "has_fused_element" UBERON:0011655
is_a: UBERON:0007829 ! pectoral girdle bone
relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle
[Term]
id: UBERON:0007842
name: membrane bone
def: "Bone element that arises as a result of direct ossification." [VSAO:0000023]
xref: AEO:0000085
xref: EHDAA2:0003085
xref: TAO:0001645
xref: VSAO:0000023
xref: XAO:0004014
xref: ZFA:0001636
property_value: UBPROP:0000001 "Bone element that arises as a result of intramembranous ossification.[VSAO]" xsd:string
property_value: UBPROP:0000001 "Intramembranous bone that forms deep in the organism.[TAO]" xsd:string
is_a: UBERON:0001474 {source="VSAO"} ! bone
[Term]
id: UBERON:0007843
name: uncinate process of ribs
def: "A posterior projection from proximal rib segments. Offers attachment to muscles supporting the scapula[Kardong]." [ISBN10:0073040584, Wikipedia:Uncinate_processes_of_ribs]
comment: WP: Although bony uncinate processes are unique to birds, cartilaginous uncinate processes are present in crocodiles. The uncinate process has also been reported in Sphenodon, Caudipteryx, oviraptorids, Confuciusornis and Chaoyangia however it does not occur in Archaeopteryx
synonym: "uncinate process" BROAD INCONSISTENT [AAO:0000741]
xref: AAO:0000741
property_value: UBPROP:0000001 "Posteriorly directed process (occasionally directed anteriorly) usually associated with the rib (sometimes with the transverse process) of the third vertebra; they provide the origin of the mm serratus superior, medius, and inferior.[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0005175 ! chest organ
disjoint_from: UBERON:0010372 ! uncinate process of ethmoid
disjoint_from: UBERON:0010373 ! uncinate process of pancreas
relationship: part_of UBERON:0010388 {source="Kardong"} ! proximal segment of rib
[Term]
id: UBERON:0007844
name: cartilaginous element
def: "Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VSAO:curator]
comment: AO notes: TAO still mixes tissue and element
subset: organ_slim
synonym: "cartilage" RELATED [VSAO:0000000]
synonym: "cartilage element" EXACT []
synonym: "cartilage organ" EXACT [FMA:55107]
synonym: "chondrogenic element" EXACT [VSAO:0000000]
xref: AAO:0011130
xref: FMA:55107
xref: VSAO:0000000
xref: XAO:0004013
xref: ZFA:0001501
is_a: UBERON:0004765 {source="VSAO"} ! skeletal element
relationship: develops_from UBERON:0005863 {source="VSAO"} ! cartilaginous condensation
relationship: has_part UBERON:0002418 {source="VSAO"} ! cartilage tissue
[Term]
id: UBERON:0007845
name: regular connective tissue
def: "Connective tissue, which consists of fibroblasts, the intercellular matrix of which contains a regular network of collagen and elastic fiber bundles. Examples: bone (tissue), cartilage (tissue), dense regular collagenous tissue." [FMA:20103]
xref: FMA:20103
is_a: UBERON:0002384 {source="FMA"} ! connective tissue
[Term]
id: UBERON:0007846
name: dense regular collagenous tissue
def: "Regular connective tissue, the intercellular matrix of which consists predominantly of collagen fiber bundles arranged in parallel arrays[FMA]. Connective tissue that is dominated by collagen fibres organized into a definitive pattern (e.g., parallel to one another), with comparatively fewer cells (mostly fibroblasts)[VSAO]" [FMA:64781, VSAO:0000050]
synonym: "dense fibrous connective tissue" EXACT [FMA:64781]
synonym: "dense regular collagenous connective tissue" EXACT [FMA:64781]
synonym: "dense regular connective tissue" EXACT [FMA:64781, VSAO:0000050]
synonym: "typus regularis (textus connectivus collagenosus compactus)" EXACT [FMA:64781]
xref: FMA:64781
xref: ncithesaurus:Regular_Dense_Connective_Tissue
xref: SCTID:22560007
xref: VSAO:0000050
xref: XAO:0004030
property_value: UBPROP:0000001 "Connective tissue that is dominated by collagen fibres organized into a definitive pattern (e.g., parallel to one another), with comparatively fewer cells (mostly fibroblasts).[VSAO]" xsd:string
is_a: UBERON:0007845 {source="FMA"} ! regular connective tissue
[Term]
id: UBERON:0007862
name: perichordal tissue
def: "Fibrous connective tissue that surrounds the notochord; includes a layer of elastin." [VSAO:curator]
comment: Derived from cells surrounding the notochord (possibly the slerotome). Disparate from (not derived from) notochord.
synonym: "notochord" RELATED [VSAO:curator]
synonym: "perichordal connective tissue" EXACT [ZFA:0001633]
synonym: "perichordal sheath" EXACT [VSAO:curator]
synonym: "perichordal sheath tissue" EXACT [VSAO:curator]
synonym: "perichordal tube" RELATED [ISBN10:0073040584]
xref: AAO:0000737
xref: AAO:0010446
xref: TAO:0001642
xref: VSAO:0000054
xref: XAO:0004050
xref: ZFA:0001633
property_value: UBPROP:0000001 "Portion of connective tissue which surrounds the notochord.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: part_of notochord (VSAO:0000032) CHANGED TO: surrounds notochord (UBERON:0002328)[VSAO]" xsd:string
is_a: UBERON:0002384 {source="VSAO"} ! connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0003089 {source="Kardong"} ! sclerotome
relationship: surrounds UBERON:0002328 {source="VSAO-modified"} ! notochord
[Term]
id: UBERON:0007914
name: head or neck bone
xref: MA:0000569
is_a: UBERON:0001474 {source="MA"} ! bone
relationship: part_of UBERON:0007811
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0007811 ! craniocervical region
relationship: part_of UBERON:0007811 {source="MA"} ! craniocervical region
relationship: part_of UBERON:0007811 ! craniocervical region
[Term]
id: UBERON:0007958
name: central carpal bone
def: "A small bone occasionally found at the dorsal aspect of the wrist between the scaphoid, capitate, and trapezoid; it is developed as an independent cartilage in early foetal life but usually becomes fused with the scaphoid; it occurs normally in most monkeys." [http://www.medilexicon.com/medicaldictionary.php?t=63518]
comment: axioms for VSAO:0005042
synonym: "central bone" BROAD [http://www.medilexicon.com/medicaldictionary.php?t=63518]
synonym: "central carpals" EXACT [VSAO:0005042]
synonym: "centrale" RELATED [MA:0001344]
synonym: "os carpi centrale" RELATED [http://epub.ub.uni-muenchen.de/8251/1/8251.pdf]
synonym: "os centrale" EXACT [VSAO:0005042]
synonym: "os centrale" RELATED []
synonym: "os centrale carpi" RELATED []
xref: FMA:77232
xref: MA:0001344
xref: SCTID:26987000
is_a: UBERON:0001435 {source="MA"} ! carpal bone
[Term]
id: UBERON:0007959
name: falciform carpal bone
comment: todo - check relationship to radial sesamoid
synonym: "os falciform" EXACT [UBERON:cjm]
synonym: "os falciforme" EXACT [UBERON:cjm]
xref: MA:0001345
is_a: UBERON:0001435 {source="MA"} ! carpal bone
[Term]
id: UBERON:0007960
name: scapholunate
def: "The combined scaphoid and lunate bones." [UBERON:cjm]
comment: Taxon notes: present in mouse[based on MA], carnivora[Websters] and macropods[WP]
synonym: "intermedioradial carpal bone" RELATED [MA:0001346]
synonym: "scapholunate bone" EXACT [UBERON:cjm]
synonym: "scapholunatum" RELATED [UBERON:cjm]
xref: MA:0001346
property_value: "has_fused_element" UBERON:0001427
property_value: "has_fused_element" UBERON:0001428
is_a: UBERON:0001480 {source="MA"} ! proximal carpal bone
[Term]
id: UBERON:0007990
name: proximal sesamoid bone of foot
xref: MA:0001376
is_a: UBERON:0004248 {source="MA"} ! foot digit bone
is_a: UBERON:0008000 ! sesamoid bone of foot
[Term]
id: UBERON:0007991
name: proximal sesamoid bone of hand
xref: MA:0001377
is_a: UBERON:0004249 {source="MA"} ! hand digit bone
is_a: UBERON:0007997 ! sesamoid bone of hand
[Term]
id: UBERON:0007993
name: ulnar sesamoid bone
synonym: "ulnar sesamoid" EXACT []
xref: MA:0001379
is_a: UBERON:0001479 {source="MA"} ! sesamoid bone
is_a: UBERON:0003466 {source="MA"} ! lower arm bone
is_a: UBERON:0011141 ! appendicular ossicle
[Term]
id: UBERON:0007997
name: sesamoid bone of hand
xref: FMA:42353
xref: SCTID:368448000
is_a: UBERON:0001479 {source="FMA"} ! sesamoid bone
is_a: UBERON:0005897 ! hand bone
is_a: UBERON:0011141 ! appendicular ossicle
relationship: part_of UBERON:0002398
intersection_of: UBERON:0001479 ! sesamoid bone
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0001442 ! skeleton of hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0008000
name: sesamoid bone of foot
xref: FMA:45096
xref: SCTID:244675002
is_a: UBERON:0001479 {source="FMA"} ! sesamoid bone
is_a: UBERON:0005899 ! foot bone
is_a: UBERON:0011141 ! appendicular ossicle
relationship: part_of UBERON:0002387
intersection_of: UBERON:0001479 ! sesamoid bone
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0001445 {source="FMA"} ! skeleton of foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0008001
name: irregular bone
def: "The irregular bones are bones which, from their peculiar form, cannot be grouped as long bone, short bone, flat bone or sesamoid bone. Irregular bones serve various purposes in the body, such as protection of nervous tissue, affording multiple anchor points for skeletal muscle attachment (as with the sacrum), and maintaining pharynx and trachea support, and tongue attachment (such as the hyoid bone). They consist of cancellous tissue enclosed within a thin layer of compact bone. The irregular bones are: the vertebrC&, sacrum, coccyx, temporal, sphenoid, ethmoid, zygomatic, maxilla, mandible, palatine, inferior nasal concha, and hyoid." [Wikipedia:Irregular_bone]
synonym: "os irregulare" EXACT []
synonym: "os irregulare" RELATED LATIN [Wikipedia:Irregular_bone]
xref: FMA:7477
xref: ncithesaurus:Irregular_Bone
xref: SCTID:421560006
is_a: UBERON:0001474 {source="FMA"} ! bone
[Term]
id: UBERON:0008114
name: joint of girdle
subset: grouping_class
synonym: "girdle joint" EXACT [OBOL:automatic]
xref: MA:0001505
is_a: UBERON:0000982 {source="MA"} ! skeletal joint
relationship: part_of UBERON:0007823
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0007823 ! appendage girdle region
relationship: connects UBERON:0007828 ! girdle bone/zone
relationship: part_of UBERON:0007823 ! appendage girdle region
[Term]
id: UBERON:0008115
name: surface of cartilage
synonym: "cartilage surface" EXACT [FMA:76668]
xref: FMA:76668
is_a: UBERON:0006984 ! anatomical surface
[Term]
id: UBERON:0008124
name: joint articular surface
comment: note that FMA has multiple "Articular surface of X" classes, with no way to group them
xref: MA:0001518
is_a: UBERON:0008115 ! surface of cartilage
relationship: part_of UBERON:0002217 {source="MA"} ! synovial joint
[Term]
id: UBERON:0008187
name: hypertrophic cartilage zone
comment: see also VSAO:0000098
xref: MA:0002849
is_a: UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0004763 {source="MA"} ! endochondral bone tissue
[Term]
id: UBERON:0008188
name: tendon of biceps brachii
synonym: "biceps brachii tendon" EXACT [FMA:38152]
xref: EMAPA:25053
xref: FMA:38152
xref: SCTID:361886007
is_a: UBERON:0000043 {source="FMA"} ! tendon
relationship: attaches_to UBERON:0001507
intersection_of: UBERON:0000043 ! tendon
intersection_of: attaches_to UBERON:0001507 ! biceps brachii
relationship: attaches_to UBERON:0001507 ! biceps brachii
[Term]
id: UBERON:0008192
name: tendon of triceps brachii
synonym: "triceps brachii tendon" EXACT [FMA:38380]
synonym: "triceps tendon" EXACT []
xref: FMA:38380
xref: SCTID:245105007
is_a: UBERON:0000043 {source="FMA"} ! tendon
relationship: attaches_to UBERON:0001509
intersection_of: UBERON:0000043 ! tendon
intersection_of: attaches_to UBERON:0001509 ! triceps brachii
relationship: attaches_to UBERON:0001509 ! triceps brachii
[Term]
id: UBERON:0008193
name: pneumatized bone
def: "a bone that is hollow or contains many air cells, such as the mastoid process of the temporal bone[TMD]. Skeletal pneumaticity is the presence of air spaces within bones. Skeletal pneumaticity exists only in synapsids and archosaurs. It is generally produced during development by excavation of bone by pneumatic diverticula (air sacs) from an air-filled space such as the lungs or nasal cavity. Pneumatization is highly variable between individuals, and bones not normally pneumatized can become pneumatized in pathological development. Pneumatization occurs in the skulls of mammals, crocodilians and birds among extant groups, as well as extinct archosaurs including the dinosaurs and pterosaurs. Pneumatic spaces include the paranasal sinuses and some of the mastoid cells[WP]." [http://www.medilexicon.com/medicaldictionary.php?t=11303, Wikipedia:Skeletal_pneumaticity]
comment: editor note: subclasses of this should be checked for taxonomic consistency
synonym: "hollow bone" RELATED []
synonym: "os pneumaticum" EXACT [FMA:7478]
synonym: "pneumatic bone" EXACT [FMA:7478]
xref: FMA:7478
xref: galen:PneumaticBone
xref: SCTID:333008005
is_a: UBERON:0008001 {source="FMA"} ! irregular bone
relationship: has_part UBERON:0010528
intersection_of: UBERON:0001474 ! bone
intersection_of: has_part UBERON:0010528 ! pneumatic cavity of bone
relationship: has_part UBERON:0010528 ! pneumatic cavity of bone
[Term]
id: UBERON:0008194
name: tibiotarsus
def: "The tibiotarsus is the large bone between the femur and the tarsometatarsus in the leg of a bird. It is the fusion of the proximal part of the tarsus with the tibia. A similar structure also occurred in the Mesozoic Heterodontosauridae. These small ornithischian dinosaurs were unrelated to birds and the similarity of their foot bones is best explained by convergent evolution." [Wikipedia:Tibiotarsus]
property_value: "has_fused_element" UBERON:0000979
property_value: "has_fused_element" UBERON:0001447
is_a: UBERON:0003464 ! hindlimb bone
relationship: develops_from UBERON:0010902 ! tibiotarsus cartilaginous condensation
relationship: part_of UBERON:0001441 ! hindlimb skeleton
[Term]
id: UBERON:0008195
name: tarsometatarsus
def: "The tarsometatarsus is a bone that is found in the lower leg of certain tetrapods, namely birds. It is formed from the fusion of several bones found in other types of animals, and homologous to the mammalian tarsal (ankle) and metatarsal (foot) bones. Despite this, the tarsometatarsus of birds is often referred to as just the tarsus or metatarsus." [Wikipedia:Tarsometatarsus]
comment: Taxon notes: found in birds[VSAO]
property_value: "has_fused_element" UBERON:0001448
property_value: "has_fused_element" UBERON:0009879
is_a: UBERON:0005899 ! foot bone
relationship: develops_from UBERON:0010900 ! tarsometatarsus cartilaginous condensation
relationship: part_of UBERON:0001445 ! skeleton of foot
[Term]
id: UBERON:0008196
name: muscle of pectoral girdle
synonym: "muscle of shoulder girdle" EXACT [FMA:37347]
synonym: "pectoral girdle muscle" EXACT [FMA:37347]
xref: FMA:37347
is_a: UBERON:0010891 ! pectoral complex muscle
relationship: part_of UBERON:0001421
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0004471 ! musculature of pectoral girdle
[Term]
id: UBERON:0008198
name: nail plate
def: "The nail plate is the hard and translucent portion of the nail, composed of keratin." [https://github.com/cmungall/uberon/issues/20, https://sourceforge.net/tracker/?func=detail&aid=3307500&group_id=36855&atid=440764, Wikipedia:Nail_plate]
comment: AO Notes: in FMA, the nail is the nail plate
synonym: "lamina unguis" RELATED LATIN [Wikipedia:Nail_plate]
xref: http://upload.wikimedia.org/wikipedia/commons/9/9f/Fingernail_label.jpg
xref: MA:0002708
xref: ncithesaurus:Nail_Plate
xref: SCTID:372177002
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001705 {source="MA"} ! nail
[Term]
id: UBERON:0008199
name: chin
def: "Surface structure that is the anteriormost part of the lower jaw region. In humans, the chin is the lowermost part of the face. It is formed by the lower front of the mandible. People show a wide variety of chin structures. See Cleft chin. The chin developed as a point of muscular attachment facilitating minute movements of the lips associated with speech. In human evolution, the chin is a cladistic apomorphy, partially defining anatomically modern Humans as distinct from archaic forms." [TAO:0002254, Wikipedia:Chin]
synonym: "chins" RELATED [Wikipedia:Chin]
synonym: "mental part of face" EXACT [FMA:46495]
synonym: "mental region" EXACT [FMA:46495]
synonym: "mental region of face" EXACT [FMA:46495]
synonym: "mentum" RELATED LATIN [Wikipedia:Chin]
synonym: "regio mentalis" EXACT [FMA:46495, FMA:TA]
xref: FMA:46495
xref: GAID:67
xref: galen:Chin
xref: http://upload.wikimedia.org/wikipedia/commons/6/60/Gray1195.png
xref: MESH:A.01.456.505.259
xref: SCTID:362632004
xref: TAO:0002254
property_value: UBPROP:0000001 "Surface structure that is the anteriormost region of the lower jaw.[TAO]" xsd:string
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001456 {source="MESH"} ! face
relationship: part_of UBERON:0001710 {source="FMA"} ! lower jaw region
[Term]
id: UBERON:0008200
name: forehead
def: "The part of the face above the eyes[MESH]. In human anatomy, the forehead is the fore part of the head. It is, formally, an area of the head bounded by three features, two of the skull and one of the scalp. The top of the forehead is marked by the hairline, the edge of the area where hair on the scalp grows. The bottom of the forehead is marked by the supraorbital ridge, the bone feature of the skull above the eyes. The two sides of the forehead are marked by the temporal ridge, a bone feature that links the supraorbital ridge to the coronal suture line and beyond[WP]." [MESH:A.01.456.505.580, Wikipedia:Forehead]
synonym: "fore head" RELATED [Wikipedia:Forehead]
synonym: "sinciput" RELATED LATIN [Wikipedia:Forehead]
xref: FMA:63864
xref: GAID:74
xref: galen:Forehead
xref: http://upload.wikimedia.org/wikipedia/commons/8/83/Forhead_01_ies.jpg
xref: MESH:A.01.456.505.580
xref: ncithesaurus:Forehead
xref: SCTID:362614004
is_a: UBERON:0003102 ! surface structure
relationship: part_of UBERON:0001456 {source="FMA"} ! face
[Term]
id: UBERON:0008201
name: scute
def: "A bony external plate or scale, as on the shell of a turtle, the skin of crocodilians, the feet of some birds. Scutes are similar to scales and serve the same function. Unlike the scales of fish and snakes, which are formed from the epidermis, scutes are formed in the lower vascular layer of the skin and the epidermal element is only the top surface. Forming in the living dermis, the scutes produce a horny outer layer, that is superficially similar to that of scales. Scutes will usually not overlap as snake scales (but see the pangolin). The outer keratin layer is shed piecemeal, and not in one continuous layer of skin as seen in snakes or lizards. The dermal base may contain bone and produce dermal armour. Scutes with a bony base are properly called osteoderms. Dermal scutes are also found in the feet of birds and tails of some mammals, and are believed to be the primitive form of dermal armour in reptiles. The term is also used to describe the heavy armour of the armadillo and the extinct glyptodon, and is occasionally used as an alternative to scales in describing snakes or certain fishes, such as sturgeons[WP]." [Wikipedia:Scute]
synonym: "scuta" EXACT PLURAL [Wikipedia:Scute]
synonym: "scutae" EXACT PLURAL [Wikipedia:Scute]
synonym: "scutum" EXACT [Wikipedia:Scute]
is_a: UBERON:0003102 ! surface structure
[Term]
id: UBERON:0008202
name: bone of hip region
comment: in MA, this includes the femur. i.e. pelvic girdle bone or femur; note that this makes the ilium etc in MA hindlimb bones. in MA this is a hindlimb bone
xref: MA:0000655
xref: SCTID:304907005
is_a: UBERON:0001474 ! bone
relationship: overlaps UBERON:0001464 {source="MA"} ! hip
[Term]
id: UBERON:0008203
name: pelvic cavity
def: "The pelvic cavity is a body cavity that is bounded by the bones of the pelvis and which primarily contains reproductive organs, the urinary bladder, and the rectum. The pelvis is a marvel of physiology and is deceptively complex. It contains the lower urinary tract, reproductive system, lower digestive tract, major arteries and veins, muscle systems, nerve systems and bone systems. They all have to work together in a little crowded \"house\". It can be affected by many different diseases and by many drugs in many different ways. One part may impact upon another, for example constipation may overload the rectum and compress the urinary bladder, or childbirth might damage the pudendal nerves and later lead to anal weakness." [Wikipedia:Pelvic_cavity]
synonym: "cavitas pelvis" RELATED LATIN [Wikipedia:Pelvic_cavity]
synonym: "space of pelvic compartment" EXACT [FMA:9738]
xref: FMA:9738
xref: http://upload.wikimedia.org/wikipedia/commons/e/ee/Scheme_body_cavities-en.svg
xref: SCTID:281903009
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0002355 {source="FMA"} ! pelvis
relationship: part_of UBERON:0003684 {source="FMA"} ! abdominal cavity
[Term]
id: UBERON:0008229
name: craniocervical region musculature
synonym: "head or neck muscle" EXACT [MA:0000571]
synonym: "head or neck muscle" RELATED [MA:0000571]
xref: MA:0000571
is_a: UBERON:0001015 {source="MA"} ! musculature
relationship: part_of UBERON:0007811
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0007811 ! craniocervical region
relationship: part_of UBERON:0007811 ! craniocervical region
relationship: part_of UBERON:0007811 {source="MA"} ! craniocervical region
[Term]
id: UBERON:0008230
name: tibialis
def: "Either of two muscles of the calf of the leg." [Fast_Health_Medical_Dictionary:http://www.fasthealth.com/dictionary/]
xref: BTO:0000864
xref: MA:0002425
xref: ncithesaurus:Tibialis
is_a: UBERON:0000366 {source="BTO"} ! flexor muscle
is_a: UBERON:0004256 ! hindlimb zeugopod muscle
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0008231
name: dorsal thoracic segment of trunk
def: "Subdivision of thorax, which in humans is the posterior part of the thorax and is demarcated from the chest by the external surface of the posterolateral part of the rib cage and the anterior surface of the thoracic vertebral column; together with the chest, it constitutes the thorax." [FMA:24217]
synonym: "dorsum of thorax" EXACT [FMA:24217]
synonym: "posterior part of thorax" EXACT [FMA:24217]
synonym: "thoracic back" EXACT [FMA:24217]
synonym: "thoracic part of back" EXACT [FMA:24217]
synonym: "upper back" EXACT [MA:0000028]
xref: FMA:24217
xref: MA:0000028
xref: SCTID:362666008
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000915 {source="MA"} ! thoracic segment of trunk
relationship: part_of UBERON:0000915 {source="FMA"} ! thoracic segment of trunk
relationship: part_of UBERON:0011270 {source="FMA"} ! dorsal trunk
[Term]
id: UBERON:0008242
name: lower back muscle
xref: MA:0000502
xref: SCTID:317178000
is_a: UBERON:0002324 ! muscle of back
is_a: UBERON:0003833 {source="MA"} ! abdominal segment muscle
relationship: part_of UBERON:0005462
intersection_of: UBERON:0002324 ! muscle of back
intersection_of: part_of UBERON:0005462 ! lower back
relationship: part_of UBERON:0005462 {source="MA"} ! lower back
relationship: part_of UBERON:0005462 ! lower back
[Term]
id: UBERON:0008243
name: upper back muscle
xref: MA:0000508
xref: SCTID:305071003
is_a: UBERON:0002324 ! muscle of back
is_a: UBERON:0003830 {source="MA"} ! thoracic segment muscle
relationship: part_of UBERON:0008231
intersection_of: UBERON:0002324 ! muscle of back
intersection_of: part_of UBERON:0008231 ! dorsal thoracic segment of trunk
relationship: part_of UBERON:0008231 {source="MA"} ! dorsal thoracic segment of trunk
relationship: part_of UBERON:0008231 ! dorsal thoracic segment of trunk
[Term]
id: UBERON:0008245
name: pennate muscle
def: "A pennate muscle (also called a penniform muscle) is a muscle with fascicles that attach obliquely (in a slanting position) to its tendon. These types of muscles generally allow better stabilization and force production but less flexibility. Individual muscle fibers are formed into bundles of fasciculi and these bundles of fasciculi are formed into bundles of fascicles which compose the entire muscle itself. In a pennate muscle, the fascicles will form an angle with its central tendon. If all the fascicles are on the same side of the tendon, the pennate muscle is called unipennate. Examples of this include certain muscles in the hand. If there are fascicles on both sides of the central tendon, the pennate muscle is called bipennate. The rectus femoris, a large muscle in the quadriceps, is typical. If the central tendon branches within a pennate muscle, the muscle is called multipennate, as seen in the deltoid muscle in the shoulder." [Wikipedia:Pennate_muscle]
comment: note the FMA class does not denote a muscle organ. todo: add child classes
xref: FMA:74993
xref: http://upload.wikimedia.org/wikipedia/commons/1/14/Rectus_femoris.png
xref: Wikipedia:Pennate_muscle
is_a: UBERON:0001630 ! muscle organ
relationship: has_muscle_antagonist UBERON:0002463 {source="dbpedia"} ! hamstring muscle
relationship: has_muscle_nerve UBERON:0001267 {source="dbpedia"} ! femoral nerve
relationship: has_muscle_origin UBERON:0001269 {notes="anterior inferior iliac spine and the exterior surface of the bony ridge which forms the iliac portion of the acetabulum", source="dbpedia"} ! acetabular part of hip bone
[Term]
id: UBERON:0008246
name: pyloric stomach
def: "The mouth of a starfish is located on the underside of the body, and opens through a short esophagus into firstly a cardiac stomach, and then, a second, pyloric stomach. Each arm also contains two pyloric caeca, long hollow tubes branching outwards from the pyloric stomach. Each pyloric caecum is lined by a series of digestive glands, which secrete digestive enzymes and absorb nutrients from the food. A short intestine runs from the upper surface of the pyloric stomach to open at an anus in the center of the upper body" [Wikipedia:Starfish]
subset: organ_slim
xref: BTO:0002121
xref: SCTID:280119005
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0008247
name: tube foot
def: "One of the numerous external, fluid-filled muscular tubes of echinoderms, such as the starfish or sea urchin, serving as organs of locomotion, food handling, and respiration[BTO]. Tube feet consist of two parts: ampulla and podia. Ampulla contain both circular muscles and longitudinal muscle, whereas the podia contain the latter only. Thus the podia use suction to attach to the substratum[WP]." [BTO:0001919, Wikipedia:Tube_feet]
synonym: "tube feet" RELATED PLURAL [Wikipedia:Tube_feet]
xref: BTO:0001919
is_a: UBERON:0000026 ! appendage
[Term]
id: UBERON:0008248
name: pyloric cecum
def: "The pyloric ceca (or digestive glands) and the cardiac stomach produce digestive enzymes in starfishes. Digested material is absorbed through the pyloric ceca for transport to the rest of the body. Each pyloric cecum extends the length of each arm." [BTO:0002120]
synonym: "pyloric caecum" EXACT [BTO:0002120]
xref: BTO:0002120
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0008250
name: cardiac stomach
def: "In starfishes the cardiac stomach is connected to a pyloric stomach which is located above it. Food can be brought into the stomach through the mouth or, in many species, the cardiac stomach can be extended out through the mouth to digest food outside the body. Suspension-feeding starfish use their tube feet to pass food to the mouth." [BTO:0002122]
subset: organ_slim
xref: BTO:0002122
is_a: UBERON:0004921 ! subdivision of digestive tract
[Term]
id: UBERON:0008251
name: water vascular system
def: "The water vascular system is a hydraulic system used by echinoderms, such as sea stars and sea urchins, for locomotion, food and waste transportation, and respiration.[1] The system is composed of canals connecting numerous tube feet. Echinoderms move by alternately contracting muscles that force water into the tube feet, causing them to extend and push against the ground, then relaxing to allow the feet to retract.[WP]." [Wikipedia:Water_vascular_system]
xref: BTO:0002125
is_a: UBERON:0000467 ! anatomical system
[Term]
id: UBERON:0008252
name: tube foot ampulla
def: "The constant contraction of ampulla (to extend and retract the tube feet) helps to move a starfish. The ampullae are teeth like structures surrounding the radial canal." [BTO:0002124]
xref: BTO:0002124
is_a: UBERON:0003913 ! tooth-like structure
relationship: part_of UBERON:0008247 ! tube foot
relationship: part_of UBERON:0008251 {source="BTO"} ! water vascular system
[Term]
id: UBERON:0008253
name: Aristotle's lantern
def: "Within the mouth of a sea urchin is an elaborate five-sided jaw structure called Aristotles lantern that can be partially extruded from the mouth. It is able to grind up calcareous exoskeletons of plants and animals." [BTO:0001923, Wikipedia:Aristotle's_lantern]
synonym: "Aristotles lantern" EXACT [BTO:0001923]
xref: BTO:0001923
xref: http://animaldiversity.ummz.umich.edu/site/resources/biodidac/echino001B.gif/medium.jpg
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165 {source="BTO"} ! mouth
[Term]
id: UBERON:0008254
name: styliform cartilage
def: "shaft of skeletal tissue that articulates with the lateral border of the carpus." [ISBN-10:0226313379]
property_value: "homologous_to" UBERON:0001429
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0007844 ! cartilaginous element
relationship: part_of UBERON:0001440 ! forelimb skeleton
[Term]
id: UBERON:0008255
name: right clavicle
xref: FMA:13322
is_a: UBERON:0001105 {source="FMA"} ! clavicle
relationship: in_right_side_of UBERON:0000468
intersection_of: UBERON:0001105 ! clavicle
intersection_of: in_right_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_right_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0008256
name: left clavicle
xref: FMA:13323
is_a: UBERON:0001105 {source="FMA"} ! clavicle
relationship: in_left_side_of UBERON:0000468
intersection_of: UBERON:0001105 ! clavicle
intersection_of: in_left_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0008257
name: radial sesamoid
def: "In the giant panda, a large digitlike preaxial element that articulates with the scapholunatum and the medial border of the first metacarpal." [ISBN-10:0226313379]
synonym: "os sesamoideum radiale" EXACT [ISBN-10:0226313379]
is_a: UBERON:0001435 ! carpal bone
is_a: UBERON:0007997 ! sesamoid bone of hand
relationship: connected_to UBERON:0003645 ! metacarpal bone of digit 1
relationship: connected_to UBERON:0007960 ! scapholunate
relationship: part_of UBERON:0009880 ! carpal skeleton
[Term]
id: UBERON:0008258
name: oral surface
synonym: "actinal side" EXACT []
synonym: "actinal surface" EXACT []
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0008259
name: aboral surface
synonym: "abactinal side" EXACT []
synonym: "abactinal surface" EXACT []
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0008260
name: spine appendage
def: "a hard, thorny or needle-like structure which occurs on various animals. Animals such as porcupines and sea urchins grow spines as a self-defense mechanism. Spines are often formed of keratin. Other animals with spines are hedgehogs, spiny mice and at least two ornithischian dinosaurs." [Wikipedia:Spine_(zoology)]
synonym: "spine" BROAD []
is_a: UBERON:0000026 ! appendage
[Term]
id: UBERON:0008261
name: pedicellaria
def: "a small wrench or claw-shaped structure commonly found on Echinoderms, particularly in sea stars (class Asteroidea) and sea urchins (class Echinoidea). Pedicellariae are poorly understood but in some taxa, they are thought to keep the body surface clear of algae, encrusting organisms, and other debris in conjunction with the ciliated epidermis present in all echinoderms. Pedicellariae in some taxa, such as the deep-sea Brisingida, and the Antarctic Labidiaster are known to function in food capture. In forcipulate sea stars, each pedicellaria is typically composed three forceps-like valves. Other asteroids can have pedicellariae composed of only two components. In some asteroid sea stars pedicellariae are present around the base of a spine or on the surface of the animal's body. In other sea stars, they are present in pits on the abactinal, marginal, or actinal surface; oftentimes on the adambulacral plate adjacent to the tube foot furrow." [Wikipedia:Pedicellaria]
synonym: "pedicellariae" EXACT PLURAL [Wikipedia:Pedicellaria]
is_a: UBERON:0000026 ! appendage
[Term]
id: UBERON:0008262
name: ambulacral area
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0008263
name: inter-ambulacral area
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0008264
name: echinopluteus larval stage
def: "Larval stage in echinoderms characterized by a planktonic and feeding larval form that possesses limb-like outgrowths bearing ciliated bands." [http://www.encyclopedia.com/doc/1O8-echinopluteuslarva.html]
synonym: "pluteus larval stage" EXACT []
is_a: UBERON:0000069 ! larval stage
[Term]
id: UBERON:0008265
name: echinopluteus larva
def: "A planktonic and feeding larval form that possesses limb-like outgrowths bearing ciliated bands." [http://www.encyclopedia.com/doc/1O8-echinopluteuslarva.html]
synonym: "pluteus larva" EXACT []
is_a: UBERON:0002548 ! larva
relationship: existence_starts_and_ends_during UBERON:0008264
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_starts_and_ends_during UBERON:0008264 ! echinopluteus larval stage
relationship: existence_starts_and_ends_during UBERON:0008264 ! echinopluteus larval stage
[Term]
id: UBERON:0008266
name: periodontal ligament
def: "The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. It consist of cells, extracellular compartment of fibers. The cells are fibroblast, epithelial, undifferentiated mesenchymal cells, bone and cementum cells. The extracellular compartment consists of collagen fibers bundles embedded in ground substance. The PDL substance has been estimated to be 70% water and is thought to have a significant effect on the tooth's ability to withstand stress loads[WP]." [BTO:0001020, https://github.com/cmungall/uberon/issues/21, Wikipedia:Periodontal_fiber]
comment: note FMA treats periodontium and periodontal ligament as the same
synonym: "alveolar periosteum" RELATED [BTO:0001020]
synonym: "alveolodental ligament" RELATED [BTO:0001020]
synonym: "alveolodental membrane" RELATED [BTO:0001020]
synonym: "desmodontium" RELATED [BTO:0001020]
synonym: "fibra periodontalis" EXACT LATIN [Wikipedia:Periodontal_ligament]
synonym: "odontoperiosteum" RELATED [BTO:0001020]
synonym: "paradentium" RELATED [BTO:0001020]
synonym: "PDL" RELATED [Wikipedia:Periodontal_ligament]
synonym: "peridental membrane" RELATED [BTO:0001020]
synonym: "peridontal ligament" RELATED []
synonym: "peridontal membrane" RELATED [BTO:0001020]
synonym: "peridontium" RELATED [BTO:0001020]
synonym: "periodontal fiber" EXACT LATIN [Wikipedia:Periodontal_ligament]
synonym: "periodontal fibre" EXACT LATIN [Wikipedia:Periodontal_ligament]
xref: BTO:0001020
xref: GAID:1259
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg
xref: MA:0002467
xref: SCTID:245775004
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0008846 {source="FMA-moved"} ! skeletal ligament
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001758
intersection_of: UBERON:0000211 ! ligament
intersection_of: part_of UBERON:0001758 ! periodontium
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002", is_entailed="true"} ! neural crest
relationship: develops_from UBERON:0008969 {source="Wikipedia:Dental_follicle", source="PMID:19767574"} ! dental follicle
relationship: part_of UBERON:0001758 {source="BTO"} ! periodontium
relationship: part_of UBERON:0001758 ! periodontium
[Term]
id: UBERON:0008267
name: left supracardinal vein
def: "The left thoracic supracardinal vein loses its connection with the left posterior cardinal veins and left sinus horn and subsequently drains into the right supracardinal system." [ISBN-10:0443065837]
xref: SCTID:361449001
is_a: UBERON:0006300 ! supracardinal vein
[Term]
id: UBERON:0008268
name: right supracardinal vein
def: "The right supracardinal vein loses its connection with the posterior cardinal vein and makes a new anastomosis with the segments of the superior vena cava derived from the anterior cardinal vein, becoming the azygos vein." [ISBN-10:0443065837]
xref: EHDAA2:0004539
xref: SCTID:361450001
is_a: UBERON:0006300 ! supracardinal vein
[Term]
id: UBERON:0008269
name: nacre
def: "an organic-inorganic composite material produced by some mollusks as an inner shell layer; it is also what makes up pearls. It is very strong, resilient, and iridescent. Nacre is found in some ancient lineages of bivalve gastropod and cephalopod. The inner layer in the great majority of mollusk shells is porcellaneous, not nacreous, frequently resulting in a non-iridescent shine or less commonly in non-nacreous iridescence such as flame structure (e.g. conch pearl). Pearls and the inside layer of pearl oyster and freshwater pearl mussel shells are made of nacre. Many other families of mollusk also have a nacreous inner shell layer, including marine gastropods such as the Haliotidae, the Trochidae and the Turbinidae. Nacre is composed of hexagonal platelets of aragonite (a form of calcium carbonate) 10-20 µm wide and 0.5 µm thick arranged in a continuous parallel lamina. These layers are separated by sheets of organic matrix composed of elastic biopolymers (such as chitin, lustrin and silk-like proteins)[WP]." [Wikipedia:Nacre]
synonym: "mother of pearl" EXACT [Wikipedia:Nacre]
is_a: UBERON:0000463 ! portion of organism substance
is_a: UBERON:0004755 ! skeletal tissue
[Term]
id: UBERON:0008270
name: mollusc shell
def: "a calcareous exoskeleton which encloses, supports and protects the soft parts of an animal in the phylum Mollusca, which includes snails, clams, tusk shells, and several other classes. Not all shelled molluscs live in the sea, many live on the land and in freshwater." [Wikipedia:Mollusc_shell]
is_a: UBERON:0006612 ! shell
[Term]
id: UBERON:0008271
name: turtle shell
def: "a highly complicated shield for the ventral and dorsal parts of the turtle, completely enclosing all the vital organs of the turtle and in some cases even the head. It is constructed of modified bony elements such as the ribs, parts of the pelvis and other bones found in most reptiles. The bone of the shell consists of both skeletal and dermal bone, showing that the complete enclosure of the shell probably evolved by including dermal armor into the rib cage.[WP]." [Wikipedia:Turtle_shell#Shell]
is_a: UBERON:0000075 ! subdivision of skeletal system
is_a: UBERON:0006612 ! shell
[Term]
id: UBERON:0008274
name: mollusc venom
def: "Venoms from mollusks, including the Conus and Octopus species. The venoms contain proteins, enzymes, choline derivatives, slow-reacting substances, and several characterized polypeptide toxins that affect the nervous system. Mollusk venoms include cephalotoxin, venerup in, maculotoxin, surugatoxin, conotoxins, and murexine." [MESH:D.24.185.926.580.590]
synonym: "conus venom" RELATED [MESH:D.24.185.926.580.590]
synonym: "mollusc venom" RELATED [MESH:D.24.185.926.580.590]
synonym: "mollusk venom" RELATED [MESH:D.24.185.926.580.590]
synonym: "octopus venom" RELATED [MESH:D.24.185.926.580.590]
synonym: "snail venom" RELATED [MESH:D.24.185.926.580.590]
xref: MESH:D.24.185.926.580.590
is_a: UBERON:0007113 {source="MESH"} ! venom
[Term]
id: UBERON:0008275
name: carapace
def: "Dorsal subdivision of turtle shell, consisting of the animal's ribcage combined with dermal bone[WP, modified]." [Wikipedia:Carapace#Turtles_and_tortoises]
comment: note BTO class is more general
xref: BTO:0001701
is_a: UBERON:0000075 ! subdivision of skeletal system
relationship: part_of UBERON:0008271 ! turtle shell
[Term]
id: UBERON:0008276
name: plastron
def: "A composite bony plate forming the floor of the shell of a turtle consisting of fused dermal elements, including contributions from the clavicles (epiplastrons) and interclavice (epiplastron)." [ISBN10:0073040584, Wikipedia:Wikipedia:Turtle_shell#Plastron]
comment: note BTO class is more general
xref: BTO:0001701
xref: SCTID:64243001
is_a: UBERON:0000075 ! subdivision of skeletal system
relationship: part_of UBERON:0008271 ! turtle shell
[Term]
id: UBERON:0008277
name: cnida
synonym: "cnidae" EXACT PLURAL []
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0008278
name: nematocyst
def: "One of the stinging organelles of coelenterates used in catching prey." [BTO:0000918]
xref: BTO:0000918
is_a: UBERON:0008277 ! cnida
[Term]
id: UBERON:0008279
name: spirocyst
is_a: UBERON:0008277 ! cnida
[Term]
id: UBERON:0008280
name: cnidarian venom
def: "Venoms from jellyfish, corals, SEA ANEMONES, etc. They contain hemo-, cardio-, dermo- , and neurotoxic substances and probably ENZYMES. They include palytoxin, sarcophine, and anthopleurine." [MESH:D.24.185.926.580.230]
synonym: "chironex venom" RELATED [MESH:D.24.185.926.580.230]
synonym: "cnidarian venom" RELATED [MESH:D.24.185.926.580.230]
synonym: "jellyfish venom" RELATED [MESH:D.24.185.926.580.230]
synonym: "portuguese man of war venom" RELATED [MESH:D.24.185.926.580.230]
synonym: "portuguese man-of-war venom" RELATED [MESH:D.24.185.926.580.230]
synonym: "sea anemone venom" RELATED [MESH:D.24.185.926.580.230]
xref: MESH:D.24.185.926.580.230
is_a: UBERON:0007113 {source="MESH"} ! venom
[Term]
id: UBERON:0008281
name: tooth bud
def: "A knoblike tooth primordium developing into an enamel organ surrounded by a dental sac and encasing the odontogenic papilla." [BTO:0001838]
synonym: "tooth germ" RELATED [Wikipedia:Tooth_development]
xref: BTO:0001838
xref: MESH:A.14.254.900.720
xref: ncithesaurus:Tooth_Bud
xref: SCTID:53301001
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0007499 ! epithelial sac
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0005087 ! tooth placode
[Term]
id: UBERON:0008283
name: columnella
def: "a central anatomical feature of a coiled snail shell or gastropod shell. It is often only clearly visible as a structure when the shell is broken, or sliced in half vertically, or in an X-ray." [Wikipedia:Columella_(gastropod)]
is_a: UBERON:0000475 ! organism subdivision
disjoint_from: UBERON:0008341 ! columella nasi
relationship: part_of UBERON:0008270 ! mollusc shell
[Term]
id: UBERON:0008284
name: columnella muscle
def: "The muscle of the central column or axis of a spiral univalve shell." [BTO:0000277, Wikipedia:Columella_(gastropod)#Columellar_muscles]
synonym: "columella muscle" RELATED [BTO:0000277]
xref: BTO:0000277
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0008283 ! columnella
[Term]
id: UBERON:0008285
name: rumen epithelium
def: "The rumen epithelium is the tissue which lines the largest of the four fore stomachs in the ruminant animal -cows and sheep. Rumen epithelial cells are important because they are responsible for the absorption of nutrients from the rumen into the blood." [BTO:0001195, PMID:10764086]
xref: BTO:0001195
is_a: UBERON:0010040 {source="cjm"} ! stomach non-glandular epithelium
relationship: part_of UBERON:0007365
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0007365 ! rumen
relationship: part_of UBERON:0007365 ! rumen
[Term]
id: UBERON:0008286
name: feather calamus
def: "The hollow basal portion of a feather below the vane[BTO]. At the base of the feather, the rachis expands to form the hollow tubular calamus (or quill) which inserts into a follicle in the skin. The basal part of the calamus is without vanes. This part is embedded within the skin follicle and has an opening at the base (proximal umbilicus) and a small opening on the side (distal umbilicus)[WP]." [BTO:0001608]
synonym: "feather quill" RELATED [BTO:0001608]
xref: BTO:0001608
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000022 {source="BTO"} ! feather
[Term]
id: UBERON:0008287
name: feather vane
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0008292 ! vaned feature
[Term]
id: UBERON:0008288
name: feather rachis
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000022 ! feather
[Term]
id: UBERON:0008290
name: afterfeather
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000022 ! feather
[Term]
id: UBERON:0008291
name: down feature
is_a: UBERON:0000022 ! feather
[Term]
id: UBERON:0008292
name: vaned feature
is_a: UBERON:0000022 ! feather
[Term]
id: UBERON:0008293
name: filoplume feature
synonym: "filoplume" EXACT []
is_a: UBERON:0000022 ! feather
[Term]
id: UBERON:0008294
name: feather barb
def: "One of a series of branches fused to the rachis (stem) of a feather. The barbs themselves also have branches called barbules, which have hooks that lock the barbs together[WP]." [Wikipedia:Barb_(feather)]
synonym: "barb" BROAD SENSU []
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000022 ! feather
[Term]
id: UBERON:0008295
name: feather barbule
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000022 ! feather
[Term]
id: UBERON:0008296
name: femoral muscle
def: "Origin: anterior and lateral surfaces of femur; insertion: patella, common tendon of quadriceps femoris; innervation: femoral; action, extends leg." [BTO:0002542]
comment: todo - logical definition
synonym: "crureus" RELATED [BTO:0002542]
synonym: "intermediate great muscle" RELATED [BTO:0002542]
synonym: "intermediate vastus muscle" RELATED [BTO:0002542]
synonym: "musculus vastus intermedius" RELATED [BTO:0002542]
xref: BTO:0002542
is_a: UBERON:0001383 {source="BTO"} ! muscle of leg
[Term]
id: UBERON:0008297
name: pennaceous feature
def: "Pennaceous feathers are also known as contour feathers. This type of feather is present in most modern birds, and has been shown in some species of maniraptoran dinosaurs. Pennaceous feathers have a central shaft (or rachis) with vanes spreading to either side. These vanes are composed of a high number of flattened barbs, that are connected to one another with barbules. The barbules are tiny strands that criss-cross on the flattened side s of the barbs. This forms a kind of miniature velcro-like mesh that holds all the barbs together, stabilizing the vanes. Flight feathers (remiges and rectrices) are specialized types of pennaceous feathers, adapted for high loadings and often strongly asymmetric for improved flight performance[WP]." [Wikipedia:Pennaceous_feather]
is_a: UBERON:0008292 ! vaned feature
[Term]
id: UBERON:0008304
name: inner chondrogenic layer of perichondrium
def: "The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The chondrogenic layer remains undifferentiated and can form chondroblasts or chondrocytes." [Wikipedia:The_Free_Encyclopedia]
xref: BTO:0005090
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0002222 {source="BTO"} ! perichondrium
[Term]
id: UBERON:0008305
name: outer fibrous layer of perichondrium
def: "The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The fibrous layer contains fibroblasts, which produce collagenous fibers." [Wikipedia:The_Free_Encyclopedia]
xref: BTO:0005091
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0002222 {source="BTO"} ! perichondrium
[Term]
id: UBERON:0008307
name: heart endothelium
xref: BTO:0004293
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004852 ! cardiovascular system endothelium
relationship: part_of UBERON:0000948
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0008310
name: nasopharyngeal gland
subset: organ_slim
xref: FMA:55076
xref: SCTID:178973008
is_a: UBERON:0003295 ! pharyngeal gland
relationship: part_of UBERON:0001728
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001728 ! nasopharynx
relationship: part_of UBERON:0001728 ! nasopharynx
[Term]
id: UBERON:0008311
name: penile bulb artery
def: "a short vessel of large caliber which arises from the internal pudendal between the two layers of fascia of the urogenital diaphragm; it passes medialward, pierces the inferior fascia of the urogenital diaphragm, and gives off branches which ramify in the bulb of the urethra and in the posterior part of the corpus spongiosum. It gives off a small branch to the bulbo-urethral gland." [Wikipedia:Bulbourethral_artery]
synonym: "arteria bulbi penis" EXACT [BTO:0005087]
synonym: "artery of bulb of penis" EXACT [FMA:20864]
synonym: "bulbourethral artery" RELATED [BTO:0005087]
xref: BTO:0005087
xref: FMA:20864
xref: SCTID:293338009
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0004803 ! penis epithelium
relationship: branch_of UBERON:0007315 {source="FMA"} ! internal pudendal artery
relationship: part_of UBERON:0000989 {source="Obol"} ! penis
relationship: part_of UBERON:0008320 {source="BTO"} ! common penile artery
[Term]
id: UBERON:0008320
name: common penile artery
def: "The artery that serves blood to the penis. It subdivides into three arteries, the bulbourethral artery, the dorsal artery of the penis and the cavernosal artery." [Wikipedia:Penile_artery]
comment: todo - split generic structure from arterial tree
synonym: "penile artery" RELATED [BTO:0005085]
xref: BTO:0005085
xref: FMA:66318
xref: SCTID:282044005
is_a: UBERON:0004573 {source="FMA"} ! systemic artery
is_a: UBERON:0004803 ! penis epithelium
relationship: part_of UBERON:0000989 {source="BTO"} ! penis
[Term]
id: UBERON:0008321
name: deep artery of penis
def: "The deep artery of the penis (artery to the corpus cavernosum), one of the terminal branches of the internal pudendal, arises from that vessel while it is situated between the two fasciC& of the urogenital diaphragm (deep perineal pouch). It pierces the inferior fascia, and, entering the crus penis obliquely, runs forward in the center of the corpus cavernosum penis, to which its branches are distributed." [Wikipedia:Deep_artery_of_the_penis]
synonym: "arteria cavernosa penis" RELATED [BTO:0005086]
synonym: "arteria profunda penis" EXACT [BTO:0005086]
synonym: "arteria profunda penis" RELATED LATIN [Wikipedia:Deep_artery_of_the_penis]
synonym: "cavernosal artery" RELATED [BTO:0005086]
synonym: "deep penile artery" EXACT [FMA:19794]
xref: BTO:0005086
xref: FMA:19794
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Gray543.png
xref: SCTID:244293007
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0004803 ! penis epithelium
relationship: branch_of UBERON:0007315 {source="FMA"} ! internal pudendal artery
relationship: part_of UBERON:0000989 {source="FMA"} ! penis
relationship: part_of UBERON:0008320 {source="BTO"} ! common penile artery
[Term]
id: UBERON:0008322
name: deep artery of clitoris
def: "The deep artery of clitoris is a branch of the internal pudendal artery." [Wikipedia:Deep_artery_of_clitoris]
synonym: "arteria profunda clitoridis" RELATED LATIN [Wikipedia:Deep_artery_of_clitoris]
xref: FMA:20870
xref: SCTID:244297008
is_a: UBERON:0001637 {source="Obol"} ! artery
is_a: UBERON:0005156 ! reproductive structure
relationship: branch_of UBERON:0007315 {source="FMA"} ! internal pudendal artery
relationship: part_of UBERON:0002411 {source="FMA"} ! clitoris
[Term]
id: UBERON:0008323
name: dorsal artery of clitoris
xref: FMA:20867
xref: SCTID:244298003
is_a: UBERON:0001637 {source="MA"} ! artery
is_a: UBERON:0005156 ! reproductive structure
relationship: branch_of UBERON:0007315 {source="FMA"} ! internal pudendal artery
relationship: part_of UBERON:0002411 {source="FMA"} ! clitoris
[Term]
id: UBERON:0008324
name: erectile tissue
is_a: UBERON:0000479 ! tissue
[Term]
id: UBERON:0008330
name: vestibulum vaginae
def: "The space posterior to the glans clitoridis and between the labia minora, containing the openings of the vagina, urethra, and ducts of the greater vestibular glands." [BTO:0003145, Wikipedia:Vulval_vestibule]
synonym: "vaginal introitus" RELATED [BTO:0003145]
synonym: "vaginal vestibule" EXACT [FMA:19970]
synonym: "vestibule of vagina" EXACT [FMA:19970]
synonym: "vestibule of vagina" RELATED [BTO:0003145]
synonym: "vestibulum pudendi" RELATED [BTO:0003145]
synonym: "vestibulum vaginae" RELATED LATIN [Wikipedia:Vulval_vestibule]
xref: BTO:0003145
xref: FMA:19970
xref: http://upload.wikimedia.org/wikipedia/commons/f/f3/Scheidenvorhof.jpg
xref: SCTID:181446000
is_a: UBERON:0001349 {source="FMA"} ! vestibule
relationship: part_of UBERON:0000997 {source="BTO"} ! mammalian vulva
relationship: part_of UBERON:0005056 {source="FMA"} ! external female genitalia
[Term]
id: UBERON:0008331
name: clitoral smooth muscle
synonym: "clitoris smooth muscle" RELATED [BTO:0005000]
xref: BTO:0005000
is_a: UBERON:0001135 {source="BTO"} ! smooth muscle tissue
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0002411
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002411 ! clitoris
relationship: part_of UBERON:0002411 ! clitoris
relationship: part_of UBERON:0002411 {source="BTO"} ! clitoris
[Term]
id: UBERON:0008332
name: hilum of neuraxis
synonym: "neuraxis hilum" EXACT [FMA:83871]
xref: FMA:83871
is_a: UBERON:0002316 ! white matter
[Term]
id: UBERON:0008333
name: hilum of inferior olivary complex
def: "The white core of the inferior olivary nucleus of the medulla oblongata, most prominent medially." [Dorlands_Medical_Dictionary:MerckSource]
synonym: "hilum nuclei olivaris caudalis" RELATED [BTO:0002300]
synonym: "hilum nuclei olivaris inferioris" EXACT [FMA:TA]
synonym: "hilum of caudal olivary nucleus" RELATED [BTO:0002300]
synonym: "hilum of inferior olivary nucleus" EXACT [FMA:72612]
synonym: "hilum of inferior olivary nucleus" RELATED [BTO:0002300]
synonym: "inferior olivary hilum" EXACT [FMA:72612]
synonym: "inferior olive hilum" EXACT [FMA:72612]
xref: BTO:0002300
xref: FMA:72612
is_a: UBERON:0003544 ! brain white matter
is_a: UBERON:0008332 {source="FMA"} ! hilum of neuraxis
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001896 {source="FMA"} ! medulla oblongata
relationship: part_of UBERON:0007244 {source="BTO"} ! inferior olivary nucleus
[Term]
id: UBERON:0008334
name: subarachnoid sulcus
xref: FMA:75759
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0000315 ! subarachnoid space
[Term]
id: UBERON:0008335
name: ventrolateral sulcus of medulla oblongata
def: "A longitudinal sulcus on the anterior surface of the medulla oblongata, lateral to the pyramid, from which emerge the fibers of the hypoglossal nerve." [Dorlands_Medical_Dictionary:MerckSource]
synonym: "anterolateral groove of medulla oblongata" RELATED [BTO:0002777]
synonym: "anterolateral sulcus of medulla" EXACT [FMA:83797]
synonym: "sulcus anterolateralis medullae oblongatae" EXACT [FMA:TA]
synonym: "sulcus anterolateralis medullae oblongatae" RELATED [BTO:0002777]
synonym: "sulcus ventrolateralis medullae spinalis" RELATED [BTO:0002777]
synonym: "ventrolateral fissure of medulla" EXACT [FMA:83797]
synonym: "ventrolateral sulcus" EXACT [FMA:83797]
synonym: "ventrolateral sulcus of medulla" EXACT [FMA:83797]
synonym: "ventrolateral sulcus of spinal cord" RELATED [BTO:0002777]
xref: BTO:0002777
xref: FMA:83797
xref: SCTID:279291001
is_a: UBERON:0008334 {source="FMA"} ! subarachnoid sulcus
relationship: part_of UBERON:0001896 {source="BTO"} ! medulla oblongata
[Term]
id: UBERON:0008337
name: inguinal part of abdomen
def: "The external junctural region between the lower part of the abdomen and the thigh." [MESH:A.01.047.365]
comment: galen treats inguinal region and groin as distinct
synonym: "groin" EXACT [FMA:24040]
synonym: "iliac fossa viewed surgically" EXACT [FMA:24040]
synonym: "iliac region" EXACT [FMA:24040]
synonym: "iliac region" RELATED [BTO:0003358]
synonym: "inguen" EXACT [FMA:TA]
synonym: "inguen" RELATED [BTO:0003358]
synonym: "inguinal region" EXACT [FMA:24040]
synonym: "inguinal region" RELATED [BTO:0003358]
xref: BTO:0003358
xref: FMA:24040
xref: GAID:27
xref: galen:InguinalRegion
xref: MESH:A.01.047.365
xref: ncithesaurus:Inguinal_Region
xref: SCTID:243962005
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0008338
name: plantar part of foot
def: "The sole is the bottom of the foot. In humans is the sole of the foot anatomically referred to as the plantar aspect. The equivalent surface in ungulates is the hoof." [Wikipedia:Sole_%28foot%29]
synonym: "pelma" RELATED [Wikipedia:Sole_%28foot%29]
synonym: "planta" EXACT [FMA:TA]
synonym: "planta" RELATED LATIN [Wikipedia:Sole_%28foot%29]
synonym: "plantar region" EXACT [FMA:25000]
synonym: "regio plantaris" EXACT [FMA:TA]
synonym: "sole" EXACT [FMA:25000]
synonym: "sole of foot" EXACT [FMA:25000]
synonym: "sole of foot" RELATED [Wikipedia:Sole_%28foot%29]
synonym: "sole of the foot" RELATED [Wikipedia:Sole_%28foot%29]
synonym: "soles of the feet" RELATED [Wikipedia:Sole_%28foot%29]
xref: BTO:0005078
xref: FMA:25000
xref: galen:SoleOfFoot
xref: http://upload.wikimedia.org/wikipedia/commons/4/41/Soles2.jpg
xref: ncithesaurus:Plantar_Region
xref: SCTID:57999000
is_a: UBERON:0005445 {source="FMA"} ! segment of foot
is_a: UBERON:0008837 ! palmar/plantar part of autopod
[Term]
id: UBERON:0008339
name: microvascular endothelium
xref: BTO:0003122
is_a: UBERON:0004852 {source="BTO"} ! cardiovascular system endothelium
[Term]
id: UBERON:0008340
name: nasal bridge
def: "A saddle-shaped area that includes the nasal root and the lateral aspects of the nose. It lies between the glabella and the inferior boundary of the nasal bone, and extends laterally to the inner canth[WP]." [http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full, Wikipedia:Nasal_bridge]
xref: MA:0002874
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0006333 {source="MA"} ! snout
[Term]
id: UBERON:0008341
name: columella nasi
def: "the tissue that links the nasal tip to the nasal base, and separates the nares. It is the inferior margin of the nasal septum[EoM]." [http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full]
synonym: "columella" RELATED [FMA:59725]
xref: FMA:59725
xref: SCTID:361930008
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0007827 {source="FMA"} ! external nose
[Term]
id: UBERON:0008342
name: intestinal villus of duodenum
xref: FMA:63300
is_a: UBERON:0001213 {source="FMA"} ! intestinal villus
relationship: part_of UBERON:0000320 {source="FMA"} ! duodenal mucosa
[Term]
id: UBERON:0008343
name: intestinal villus of jejunum
xref: FMA:63301
is_a: UBERON:0001213 {source="FMA"} ! intestinal villus
relationship: part_of UBERON:0000399 {source="FMA"} ! jejunal mucosa
[Term]
id: UBERON:0008344
name: intestinal villus of ileum
xref: FMA:63302
is_a: UBERON:0001213 {source="FMA"} ! intestinal villus
relationship: part_of UBERON:0000331 {source="FMA"} ! ileal mucosa
[Term]
id: UBERON:0008345
name: ileal epithelium
synonym: "epithelium of ileum" EXACT [FMA:17233]
xref: FMA:17233
xref: SCTID:47046000
is_a: UBERON:0001902 ! epithelium of small intestine
relationship: part_of UBERON:0002116
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002116 ! ileum
relationship: part_of UBERON:0002116 ! ileum
relationship: part_of UBERON:0008344 {source="FMA"} ! intestinal villus of ileum
[Term]
id: UBERON:0008346
name: duodenal epithelium
synonym: "epithelium of duodenum" EXACT [FMA:17231]
xref: FMA:17231
xref: SCTID:66036002
is_a: UBERON:0001902 ! epithelium of small intestine
relationship: part_of UBERON:0002114
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002114 ! duodenum
relationship: part_of UBERON:0002114 ! duodenum
relationship: part_of UBERON:0008342 {source="FMA"} ! intestinal villus of duodenum
[Term]
id: UBERON:0008359
name: amnion epithelium
xref: BTO:0000897
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010303 ! extraembryonic epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0000305
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000305 ! amnion
relationship: part_of UBERON:0000305 ! amnion
[Term]
id: UBERON:0008367
name: breast epithelium
xref: BTO:0001428
is_a: UBERON:0000483 ! epithelium
relationship: part_of UBERON:0000310
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000310 ! breast
relationship: part_of UBERON:0000310 ! breast
[Term]
id: UBERON:0008397
name: tracheobronchial epithelium
def: "Epithelium pertaining to the trachea and bronchi." [Dorlands_Medical_Dictionary:MerckMedicus]
synonym: "bronchotracheal epithelium" RELATED [BTO:0002925]
xref: BTO:0002925
is_a: UBERON:0004802 {source="BTO"} ! respiratory tract epithelium
[Term]
id: UBERON:0008404
name: proximale tubular epithelium
def: "The cells lining the proximal tubule are cuboidal epithelial cells with deep basal membrane invaginations that provide a large basal surface area. The long microvilli (the brush border) lining the tubule lumen, maximize luminal surface area and make these cells ideally suited for both reabsorptive and secretory functions." [Renal_Physiology:Section_7\,_Chapter_3]
synonym: "proximale tubule epithelium" RELATED [BTO:0003576]
xref: BTO:0003576
is_a: UBERON:0004810 ! nephron tubule epithelium
relationship: part_of UBERON:0004134
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0004134 ! proximal tubule
relationship: part_of UBERON:0004134 {source="BTO"} ! proximal tubule
relationship: part_of UBERON:0004134 ! proximal tubule
[Term]
id: UBERON:0008408
name: distal tubular epithelium
synonym: "distal tubule epithelium" RELATED [BTO:0003948]
xref: BTO:0003948
is_a: UBERON:0004810 ! nephron tubule epithelium
relationship: part_of UBERON:0004135
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0004135 ! distal tubule
relationship: part_of UBERON:0004135 {source="BTO"} ! distal tubule
relationship: part_of UBERON:0004135 ! distal tubule
[Term]
id: UBERON:0008420
name: buccal epithelium
xref: BTO:0004803
is_a: UBERON:0003350 ! epithelium of mucosa
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0006956
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0006956 ! buccal mucosa
relationship: part_of UBERON:0006956 ! buccal mucosa
relationship: part_of UBERON:0006956 {source="BTO"} ! buccal mucosa
[Term]
id: UBERON:0008424
name: inguinal mammary gland
xref: MA:0000790
xref: SCTID:66519003
is_a: UBERON:0001911 ! mammary gland
is_a: UBERON:0005173 ! abdominal segment organ
relationship: part_of UBERON:0008337
intersection_of: UBERON:0001911 ! mammary gland
intersection_of: part_of UBERON:0008337 ! inguinal part of abdomen
relationship: part_of UBERON:0008337 ! inguinal part of abdomen
[Term]
id: UBERON:0008425
name: mammary ridge
def: "A bandlike thickening of ectoderm in the embryo extending from just below the axilla to the inguinal region and giving rise to the mammary glands[Stedmans]. One of two parallel lines, formed by thickenings of the epidermis (the mammary ridge) along the ventral surface of mammals of both sexes. They extend from the upper limbs (arms) to the lower limbs (legs) and are developed in the embryo. They give rise to the mammary glands and nipples but are otherwise usually not visible in the adult. The first manifestation of the mammary gland in many mammals is an elevated ridge or milk line, which then fragments into individual buds in specific regions lateral of the dorsal midline. These buds are either located in the thoracic region in primates, in the inguinal area in ungulates or along the entire length of the trunk in rodents and pigs. In humans, milk lines appear in the seventh week of embryonic development. After initial development of the milk lines they go into remission. Nipples develop on the milk lines of mammals. Most humans have two nipples, but in some cases more than two will develop. In most cases, these 'third nipples'—and sometimes fourth nipple—grow along the milk line[WP]." [http://dictionary.reference.com/browse/mammary%20ridge, Wikipedia:Milk_line]
comment: split ridge and milk line?
synonym: "mammary fold" EXACT [http://dictionary.reference.com/browse/mammary+ridge]
synonym: "milk line" RELATED [Wikipedia:Milk_line]
xref: EMAPA:18541
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0008426
name: transverse foramen of atlas
synonym: "foramen transversarium of atlas" EXACT [FMA:23998]
xref: FMA:23998
xref: SCTID:281220001
is_a: UBERON:0000130 ! transverse foramen
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010276 ! vertebral column opening
relationship: part_of UBERON:0001092
intersection_of: UBERON:0000130 ! transverse foramen
intersection_of: part_of UBERON:0001092 ! first cervical vertebra
relationship: part_of UBERON:0001092 ! first cervical vertebra
[Term]
id: UBERON:0008427
name: transverse foramen of axis
synonym: "foramen transversarium of axis" EXACT [FMA:23999]
xref: FMA:23999
xref: SCTID:281221002
is_a: UBERON:0000130 ! transverse foramen
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010276 ! vertebral column opening
relationship: part_of UBERON:0001093
intersection_of: UBERON:0000130 ! transverse foramen
intersection_of: part_of UBERON:0001093 ! second cervical vertebra
relationship: part_of UBERON:0001093 ! second cervical vertebra
[Term]
id: UBERON:0008428
name: ceratoglossus
def: "main, posterior part of hyoglossus muscle (vs. chondroglossus) arising from the greater horn of the hyoid bone." [http://www.medilexicon.com/medicaldictionary.php?t=56655]
synonym: "ceratoglossus muscle" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=56655]
synonym: "musculus ceratoglossus" EXACT [http://www.medilexicon.com/medicaldictionary.php?t=56655]
xref: FMA:46720
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002385 ! muscle tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001572 {source="FMA"} ! hyoglossus muscle
[Term]
id: UBERON:0008429
name: cervical vertebral foramen
xref: FMA:13480
xref: SCTID:280833008
is_a: UBERON:0001131 ! vertebral foramen
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002413
intersection_of: UBERON:0001131 ! vertebral foramen
intersection_of: part_of UBERON:0002413 ! cervical vertebra
relationship: part_of UBERON:0002413 ! cervical vertebra
[Term]
id: UBERON:0008430
name: lumbar vertebral foramen
xref: FMA:24826
xref: SCTID:280835001
is_a: UBERON:0001131 ! vertebral foramen
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002414
intersection_of: UBERON:0001131 ! vertebral foramen
intersection_of: part_of UBERON:0002414 ! lumbar vertebra
relationship: part_of UBERON:0002414 ! lumbar vertebra
[Term]
id: UBERON:0008431
name: sacral foramen
xref: FMA:31749
is_a: UBERON:0001131 ! vertebral foramen
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001094
intersection_of: UBERON:0001131 ! vertebral foramen
intersection_of: part_of UBERON:0001094 ! sacral vertebra
relationship: part_of UBERON:0001094 ! sacral vertebra
[Term]
id: UBERON:0008432
name: thoracic vertebral foramen
xref: FMA:9143
xref: SCTID:280834002
is_a: UBERON:0001131 ! vertebral foramen
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002347
intersection_of: UBERON:0001131 ! vertebral foramen
intersection_of: part_of UBERON:0002347 ! thoracic vertebra
relationship: part_of UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0008433
name: lumbar vertebral arch
synonym: "arch of lumbar vertebra" EXACT [FMA:16076]
xref: FMA:16076
xref: SCTID:312766000
is_a: UBERON:0003828 ! abdominal segment bone
is_a: UBERON:0003861 ! neural arch
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004247 ! back bone
relationship: part_of UBERON:0002414
intersection_of: UBERON:0003861 ! neural arch
intersection_of: part_of UBERON:0002414 ! lumbar vertebra
relationship: part_of UBERON:0002414 ! lumbar vertebra
[Term]
id: UBERON:0008434
name: cervical vertebral arch
synonym: "arch of cervical vertebra" EXACT [FMA:23893]
xref: FMA:23893
xref: SCTID:165269004
is_a: UBERON:0003458 ! neck bone
is_a: UBERON:0003861 ! neural arch
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004247 ! back bone
relationship: part_of UBERON:0002413
intersection_of: UBERON:0003861 ! neural arch
intersection_of: part_of UBERON:0002413 ! cervical vertebra
relationship: part_of UBERON:0002413 ! cervical vertebra
[Term]
id: UBERON:0008435
name: vertebral arch of sacral segment
xref: FMA:32401
is_a: UBERON:0003828 ! abdominal segment bone
is_a: UBERON:0003861 ! neural arch
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0005179 ! pelvis organ
relationship: part_of UBERON:0001094
intersection_of: UBERON:0003861 ! neural arch
intersection_of: part_of UBERON:0001094 ! sacral vertebra
relationship: part_of UBERON:0001094 ! sacral vertebra
[Term]
id: UBERON:0008436
name: thoracic vertebral arch
synonym: "arch of thoracic vertebra" EXACT [FMA:9151]
xref: FMA:9151
xref: SCTID:312764002
is_a: UBERON:0003827 ! thoracic segment bone
is_a: UBERON:0003861 ! neural arch
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004247 ! back bone
relationship: part_of UBERON:0002347
intersection_of: UBERON:0003861 ! neural arch
intersection_of: part_of UBERON:0002347 ! thoracic vertebra
relationship: part_of UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0008437
name: posterior arch of atlas
def: "In a cervical vertebra, the posterior arch forms about two-fifths of the circumference of the ring: it ends behind in the posterior tubercle, which is the rudiment of a spinous process and gives origin to the Recti capitis posteriores minores." [Wikipedia:Posterior_arch_of_atlas]
synonym: "posterior arch" RELATED [Wikipedia:Posterior_arch]
xref: FMA:23977
xref: http://upload.wikimedia.org/wikipedia/commons/6/6b/Arcusposterioratlantis.png
xref: SCTID:181892007
is_a: UBERON:0005814 ! arch of atlas
is_a: UBERON:0008434 {source="FMA"} ! cervical vertebral arch
relationship: part_of UBERON:0001092 {source="FMA"} ! first cervical vertebra
[Term]
id: UBERON:0008438
name: webbed interdigital region of forelimb
is_a: UBERON:0006013 ! hand interdigital region
is_a: UBERON:0006015 ! webbed interdigital region
relationship: part_of UBERON:0002398
intersection_of: UBERON:0006015 ! webbed interdigital region
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0008441 ! webbed hand
[Term]
id: UBERON:0008439
name: webbed interdigital region of hindlimb
synonym: "toe web" EXACT [Obol:automatic]
is_a: UBERON:0006014 ! foot interdigital region
is_a: UBERON:0006015 ! webbed interdigital region
relationship: part_of UBERON:0002387
intersection_of: UBERON:0006015 ! webbed interdigital region
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0008442 ! webbed foot
[Term]
id: UBERON:0008440
name: webbed autpod
is_a: UBERON:0002470 ! autopod region
relationship: has_part UBERON:0006015
intersection_of: UBERON:0002470 ! autopod region
intersection_of: has_part UBERON:0006015 ! webbed interdigital region
relationship: has_part UBERON:0006015 ! webbed interdigital region
[Term]
id: UBERON:0008441
name: webbed hand
xref: AAO:0010120
is_a: UBERON:0002398 ! hand
is_a: UBERON:0008440 ! webbed autpod
relationship: has_part UBERON:0006015
intersection_of: UBERON:0002398 ! hand
intersection_of: has_part UBERON:0006015 ! webbed interdigital region
relationship: has_part UBERON:0006015 ! webbed interdigital region
[Term]
id: UBERON:0008442
name: webbed foot
xref: AAO:0010121
is_a: UBERON:0002387 ! foot
is_a: UBERON:0008440 ! webbed autpod
relationship: has_part UBERON:0006015
intersection_of: UBERON:0002387 ! foot
intersection_of: has_part UBERON:0006015 ! webbed interdigital region
relationship: has_part UBERON:0006015 ! webbed interdigital region
[Term]
id: UBERON:0008443
name: webbed digit
is_a: UBERON:0002544 ! digit
relationship: part_of UBERON:0008440
intersection_of: UBERON:0002544 ! digit
intersection_of: part_of UBERON:0008440 ! webbed autpod
relationship: part_of UBERON:0008440 ! webbed autpod
[Term]
id: UBERON:0008444
name: webbed forelimb digit
synonym: "webbed finger" EXACT [Obol:automatic]
is_a: UBERON:0002389 ! hand digit
is_a: UBERON:0008443 ! webbed digit
relationship: part_of UBERON:0008441
intersection_of: UBERON:0002544 ! digit
intersection_of: part_of UBERON:0008441 ! webbed hand
relationship: part_of UBERON:0008441 ! webbed hand
[Term]
id: UBERON:0008445
name: webbed hindlimb digit
synonym: "webbed toe" EXACT [Obol:automatic]
is_a: UBERON:0001466 ! foot digit
is_a: UBERON:0008443 ! webbed digit
relationship: part_of UBERON:0008442
intersection_of: UBERON:0002544 ! digit
intersection_of: part_of UBERON:0008442 ! webbed foot
relationship: part_of UBERON:0008442 ! webbed foot
[Term]
id: UBERON:0008446
name: flexor pollicis longus muscle
def: "A muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus. This muscle is unique to humans, being 'either rudimentary or absent' in other primates." [Wikipedia:Flexor_pollicis_longus_muscle]
comment: Taxon notes: Modern humans are unique among hominids in having a flexor pollicis longus (FPL) muscle belly that is separate from that of the flexor digitorum profundus (FDP). While the FPL is not a separate muscle belly in extant great apes, a distinct tendon from the FDP belly might be present. In some individuals this tendon tend to act more like a ligament which restricts extension of the interphalangeal joint of the thumb. In orangutans there is a tendon similar in insertion and function to the FPL in humans, but which has an intrinsic origin on the oblique head of the adductor pollicis[WP]
synonym: "flexor pollicis" RELATED [Wikipedia:Flexor_pollicis_longus_muscle]
synonym: "flexor pollicis longus" RELATED [Wikipedia:Flexor_pollicis_longus_muscle]
synonym: "flexor pollicis muscle" RELATED [Wikipedia:Flexor_pollicis_longus_muscle]
synonym: "musculus flexor pollicis longus" RELATED LATIN [Wikipedia:Flexor_pollicis_longus_muscle]
synonym: "musculus flexor pollicis longus" RELATED [Wikipedia:Flexor_pollicis_longus_muscle]
xref: FMA:38481
xref: http://upload.wikimedia.org/wikipedia/commons/7/72/FPL.png
xref: SCTID:361818001
is_a: UBERON:0004254 {source="Wikipedia"} ! forelimb zeugopod muscle
relationship: has_muscle_antagonist UBERON:0003234 {source="dbpedia"} ! extensor pollicis longus muscle
relationship: has_muscle_insertion UBERON:0004444 {source="dbpedia", notes="The base of the distal phalanx of the thumb"} ! proximal epiphysis of distal phalanx of thumb
relationship: has_muscle_origin UBERON:0001423 {notes="The middle 2/4 of the volar surface of the radius and the adjacent interosseus membrane.", source="dbpedia"} ! radius bone
[Term]
id: UBERON:0008447
name: intertarsal joint
def: "Intertarsal articulations are the joints of the tarsus. The specific intertarsal articulations are: Talocalcaneal articulation Talocalcaneonavicular articulation Calcaneocuboid articulation Cuneonavicular articulation Cuboideonavicular articulation Intercuneiform articulation Cuneocuboid articulation" [Wikipedia:Intertarsal_articulations]
synonym: "articulationes intertarsale" RELATED [MESH:A.02.835.583.378.831]
synonym: "articulationes intertarsales" RELATED LATIN [Wikipedia:Intertarsal_articulations]
synonym: "articulationes intertarseae" RELATED [MESH:A.02.835.583.378.831]
synonym: "intermetatarsal joint" RELATED [MESH:A.02.835.583.378.831]
synonym: "intertarsal" RELATED [Wikipedia:Intertarsal_articulations]
synonym: "intertarsal articulation" RELATED [Wikipedia:Intertarsal_articulations]
synonym: "intertarsal joint" RELATED [MESH:A.02.835.583.378.831]
synonym: "tarsal joint" RELATED [MESH:A.02.835.583.378.831]
synonym: "tarsal joints" RELATED [Wikipedia:Intertarsal_articulations]
xref: FMA:44281
xref: GAID:259
xref: http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray360.png
xref: MESH:A.02.835.583.378.831
xref: ncithesaurus:Tarsal_Joint
xref: SCTID:182221001
is_a: UBERON:0001487 ! joint of foot
relationship: connects UBERON:0001447 {cardinality="2"} ! tarsal bone
relationship: connects UBERON:0001447 {notes="two adjacent tarsals"} ! tarsal bone
relationship: part_of UBERON:0004454 ! tarsal region
[Term]
id: UBERON:0008449
name: trochlear notch
def: "The semilunar notch of the ulna (trochlear notch of ulna, greater sigmoid cavity) is a large depression, formed by the olecranon and the coronoid process, and serving for articulation with the trochlea of the humerus. About the middle of either side of this notch is an indentation, which contracts it somewhat, and indicates the junction of the olecranon and the coronoid process. The notch is concave from above downward, and divided into a medial and a lateral portion by a smooth ridge running from the summit of the olecranon to the tip of the coronoid process. The medial portion is the larger, and is slightly concave transversely; the lateral is convex above, slightly concave below." [Wikipedia:Trochlear_notch]
synonym: "incisura trochlearis" RELATED [Wikipedia:Trochlear_notch]
synonym: "incisura trochlearis ulnae, incisura semilunaris ulnae" RELATED LATIN [Wikipedia:Trochlear_notch]
synonym: "semilunar notch" RELATED [Wikipedia:Trochlear_notch]
synonym: "semilunar notch of ulna" EXACT [FMA:23619]
xref: FMA:23619
xref: http://upload.wikimedia.org/wikipedia/commons/6/60/Gray212.png
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0006822 ! proximal epiphysis of ulna
[Term]
id: UBERON:0008450
name: psoas muscle
def: "A powerful flexor of the thigh at the hip joint (psoas major) and a weak flexor of the trunk and lumbar spinal column (psoas minor). Psoas is derived from the Greek \"psoa\", the plural meaning \"muscles of the loin\". It is a common site of infection manifesting as abscess (PSOAS ABSCESS). The psoas muscles and their fibers are also used frequently in experiments in muscle physiology." [MESH:A.02.633.567.825, Wikipedia:Psoas]
synonym: "psoas" EXACT [MA:0002553]
synonym: "psoas" EXACT [BTO:0001140]
xref: BTO:0001140
xref: galen:Psoas
xref: MA:0002553
xref: MESH:A.02.633.567.825
xref: ncithesaurus:Psoas_Muscle
xref: SCTID:276167002
is_a: UBERON:0008549 {source="FMA-abduced"} ! prevertebral muscle
relationship: has_muscle_antagonist UBERON:0001370 {source="dbpedia-abduced"} ! gluteus maximus
relationship: has_muscle_nerve UBERON:0009624 {source="dbpedia-abduced"} ! lumbar nerve
[Term]
id: UBERON:0008453
name: rectus capitis anterior
def: "The rectus capitis anterior (rectus capitis anticus minor) is a short, flat muscle, situated immediately behind the upper part of the Longus capitis. It arises from the anterior surface of the lateral mass of the atlas, and from the root of its transverse process, and passing obliquely upward and medialward, is inserted into the inferior surface of the basilar part of the occipital bone immediately in front of the foramen magnum." [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "anterior rectus capitis" EXACT [FMA:46312]
synonym: "anterior rectus capitis muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "anterior vertebral muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "musculus rectus capitis anterior" RELATED LATIN [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "recti capitis anteriores" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "rectus capitis" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "rectus capitis anterior" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "rectus capitis anterior muscle" EXACT [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "rectus capitus anterior" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
synonym: "rectus capitus anterior muscle" RELATED [Wikipedia:Rectus_capitis_anterior_muscle]
xref: FMA:46312
xref: http://upload.wikimedia.org/wikipedia/commons/6/6f/Rectus_capitis_anterior_muscle.PNG
xref: SCTID:244838005
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column
relationship: has_muscle_insertion UBERON:0001676 {source="dbpedia"} ! occipital bone
[Term]
id: UBERON:0008454
name: rectus capitis posterior major
def: "The Rectus capitis posterior major (Rectus capitis posticus major) arises by a pointed tendon from the spinous process of the axis, and, becoming broader as it ascends, is inserted into the lateral part of the inferior nuchal line of the occipital bone and the surface of the bone immediately below the line. As the muscles of the two sides pass upward and lateralward, they leave between them a triangular space, in which the Recti capitis posteriores minores are seen. Its main actions are to extend and rotate the atlanto-occipital joint." [Wikipedia:Rectus_capitis_posterior_major_muscle]
synonym: "greater posterior rectus capitis" EXACT [FMA:32525]
synonym: "musculus rectus capitis posterior major" RELATED LATIN [Wikipedia:Rectus_capitis_posterior_major_muscle]
synonym: "recti capitis posteriores major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle]
synonym: "rectus capitis posterior major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle]
synonym: "rectus capitis posterior major muscle" EXACT [Wikipedia:Rectus_capitis_posterior_major_muscle]
synonym: "rectus capitus posterior major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle]
synonym: "rectus capitus posterior major muscle" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle]
synonym: "rectus posterior major" RELATED [Wikipedia:Rectus_capitis_posterior_major_muscle]
xref: FMA:32525
xref: http://upload.wikimedia.org/wikipedia/commons/d/dd/Rectus_capitis_posterior_major_muscle.PNG
xref: SCTID:245994002
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column
relationship: has_muscle_insertion UBERON:0001676 {notes="Inferior nucheal line of the occipital bone", source="dbpedia"} ! occipital bone
relationship: has_muscle_nerve UBERON:0006839 {notes="Dorsal ramus of C1", source="dbpedia"} ! posterior ramus of spinal nerve
relationship: has_muscle_origin UBERON:0001093 {source="dbpedia", notes="Spinous process of the axis"} ! second cervical vertebra
[Term]
id: UBERON:0008455
name: rectus capitis posterior minor
def: "The Rectus capitis posterior minor (Rectus capitis posticus minor) arises by a narrow pointed tendon from the tubercle on the posterior arch of the atlas, and, widening as it ascends, is inserted into the medial part of the inferior nuchal line of the occipital bone and the surface between it and the foramen magnum, and also takes some attachment to the spinal dura. The synergists are the rectus capitus posterior major and Obliquus capitis. Connective tissue bridges were noted at the atlanto-occipital junction between the rectus capitis posterior minor muscle and the dorsal spinal dura. The perpendicular arrangement of these fibers appears to restrict dural movement toward the spinal cord. The ligamentum nuchae was found to be continuous with the posterior cervical spinal dura and the lateral portion of the occipital bone. Anatomic structures innervated by cervical nerves C1-C3 have the potential to cause headache pain. Included are the joint complexes of the upper 3 cervical segments, the dura mater, and spinal cord. The dura-muscular, dura-ligamentous connections in the upper cervical spine and occipital areas may provide anatomic and physiologic answers to the cause of the cervicogenic headache. This proposal would further explain manipulation's efficacy in the treatment of cervicogenic headache ." [Wikipedia:Rectus_capitis_posterior_minor_muscle]
synonym: "lesser posterior rectus capitis" EXACT [FMA:32526]
synonym: "musculus rectus capitis posterior minor" RELATED LATIN [Wikipedia:Rectus_capitis_posterior_minor_muscle]
synonym: "recti capitis posteriores minores" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle]
synonym: "rectus capitis posterior minor" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle]
synonym: "rectus capitis posterior minor muscle" EXACT [Wikipedia:Rectus_capitis_posterior_minor_muscle]
synonym: "rectus capitus posterior minor" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle]
synonym: "rectus capitus posterior minor muscle" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle]
synonym: "rectus posterior minor" RELATED [Wikipedia:Rectus_capitis_posterior_minor_muscle]
xref: FMA:32526
xref: http://upload.wikimedia.org/wikipedia/commons/e/ed/Rectus_capitis_posterior_minor.png
xref: SCTID:245995001
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column
relationship: has_muscle_insertion UBERON:0001676 {source="dbpedia", notes="the medial part of the inferior nuchal line of the occipital bone and the surface between it and the foramen magnum"} ! occipital bone
relationship: has_muscle_origin UBERON:0008437 {source="dbpedia", notes="the tubercle on the posterior arch of the atlas"} ! posterior arch of atlas
[Term]
id: UBERON:0008456
name: superior articular process of lumbar vertebra
synonym: "cranial articular process of lumbar vertebra" EXACT [FMA:16126]
xref: FMA:16126
xref: SCTID:305677003
is_a: UBERON:0001079 ! superior articular process of vertebra
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002414
intersection_of: UBERON:0001079 ! superior articular process of vertebra
intersection_of: part_of UBERON:0002414 ! lumbar vertebra
relationship: part_of UBERON:0002414 ! lumbar vertebra
[Term]
id: UBERON:0008457
name: superior articular process of sacral vertebra
synonym: "articular process of sacral segment" EXACT [FMA:16215]
synonym: "processus articularis superior (os sacrum)" EXACT [FMA:16215]
synonym: "processus articularis superior ossis sacri" EXACT [FMA:TA]
synonym: "superior articular process of sacral segment" EXACT [FMA:16215]
synonym: "superior articular process of sacrum" EXACT [FMA:16215]
xref: FMA:16215
is_a: UBERON:0001079 ! superior articular process of vertebra
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001094
intersection_of: UBERON:0001079 ! superior articular process of vertebra
intersection_of: part_of UBERON:0001094 ! sacral vertebra
relationship: part_of UBERON:0001094 ! sacral vertebra
[Term]
id: UBERON:0008459
name: superior articular process of cervical vertebra
xref: FMA:23969
xref: SCTID:57767002
is_a: UBERON:0001079 ! superior articular process of vertebra
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002413
intersection_of: UBERON:0001079 ! superior articular process of vertebra
intersection_of: part_of UBERON:0002413 ! cervical vertebra
relationship: part_of UBERON:0002413 ! cervical vertebra
[Term]
id: UBERON:0008460
name: superior articular process of thoracic vertebra
synonym: "cranial articular process of thoracic vertebra" EXACT [FMA:9155]
synonym: "processus articularis (zygapophysis) thoracicus superior" EXACT [FMA:9155]
synonym: "superior apophyseal process" EXACT [FMA:9155]
synonym: "superior zygapophysis" EXACT [FMA:9155]
xref: FMA:9155
xref: SCTID:367801006
is_a: UBERON:0001079 ! superior articular process of vertebra
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002347
intersection_of: UBERON:0001079 ! superior articular process of vertebra
intersection_of: part_of UBERON:0002347 ! thoracic vertebra
relationship: part_of UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0008461
name: inferior articular process of lumbar vertebra
synonym: "caudal articular process of lumbar vertebra" EXACT [FMA:16127]
xref: FMA:16127
xref: SCTID:306283004
is_a: UBERON:0001080 ! inferior articular process of vertebra
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002414
intersection_of: UBERON:0001080 ! inferior articular process of vertebra
intersection_of: part_of UBERON:0002414 ! lumbar vertebra
relationship: part_of UBERON:0002414 ! lumbar vertebra
[Term]
id: UBERON:0008462
name: inferior articular process of cervical vertebra
xref: FMA:23970
xref: SCTID:61633005
is_a: UBERON:0001080 ! inferior articular process of vertebra
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002413
intersection_of: UBERON:0001080 ! inferior articular process of vertebra
intersection_of: part_of UBERON:0002413 ! cervical vertebra
relationship: part_of UBERON:0002413 ! cervical vertebra
[Term]
id: UBERON:0008463
name: inferior articular process of thoracic vertebra
synonym: "caudal articular process of thoracic vertebra" EXACT [FMA:9156]
synonym: "inferior apophyseal process" EXACT [FMA:9156]
synonym: "inferior zygapophysis" EXACT [FMA:9156]
synonym: "processus articularis (zygapophysis) thoracicus inferior" EXACT [FMA:9156]
xref: FMA:9156
xref: SCTID:367814007
is_a: UBERON:0001080 ! inferior articular process of vertebra
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002347
intersection_of: UBERON:0001080 ! inferior articular process of vertebra
intersection_of: part_of UBERON:0002347 ! thoracic vertebra
relationship: part_of UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0008464
name: abductor hallucis muscle
def: "The Abductor hallucis lies along the medial border of the foot and covers the origins of the plantar vessels and nerves. It arises from the medial process of the tuberosity of the calcaneus, from the laciniate ligament, from the plantar aponeurosis, and from the intermuscular septum between it and the Flexor digitorum brevis. The fibers end in a tendon, which is inserted, together with the medial tendon of the Flexor hallucis brevis, into the tibial side of the base of the first phalanx of the great toe." [Wikipedia:Abductor_hallucis_muscle]
synonym: "abductor hallucis" RELATED [Wikipedia:Abductor_hallucis_muscle]
synonym: "musculus abductor hallucis" RELATED LATIN [Wikipedia:Abductor_hallucis_muscle]
xref: FMA:37448
xref: http://upload.wikimedia.org/wikipedia/commons/b/bf/Abductor_hallucis.png
xref: SCTID:181723001
xref: Wikipedia:Abductor_hallucis_muscle
is_a: UBERON:0001498 ! muscle of foot
relationship: has_muscle_origin UBERON:0001450 {notes="tuberosity of the calcaneus", source="dbpedia"} ! calcaneus
relationship: part_of UBERON:0008338 ! plantar part of foot
[Term]
id: UBERON:0008465
name: abductor pollicis brevis muscle
def: "The abductor pollicis brevis is a muscle in the hand that functions as an abductor of the thumb." [Wikipedia:Abductor_pollicis_brevis_muscle]
synonym: "abductor brevis" RELATED [Wikipedia:Abductor_pollicis_brevis_muscle]
synonym: "abductor pollicis brevis" RELATED [Wikipedia:Abductor_pollicis_brevis_muscle]
synonym: "musculus abductor pollicis brevis" RELATED LATIN [Wikipedia:Abductor_pollicis_brevis_muscle]
xref: FMA:37373
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Musculusabductorpollicisbrevis.png
xref: SCTID:181648007
xref: Wikipedia:Abductor_pollicis_brevis_muscle
is_a: UBERON:0001500 ! muscle of hand
is_a: UBERON:0011534 ! abductor pollicis muscle
relationship: has_muscle_antagonist UBERON:0002962 {source="dbpedia"} ! adductor pollicis muscle
relationship: has_muscle_insertion UBERON:0004445 {source="dbpedia", notes="Radial base of proximal phalanx of thumb and the thumb extensors"} ! proximal epiphysis of proximal phalanx of thumb
relationship: has_muscle_origin UBERON:0001427 {notes="Transverse carpal ligament the scaphoid and trapezium", source="dbpedia"} ! scaphoid
relationship: has_muscle_origin UBERON:0001430 {notes="Transverse carpal ligament the scaphoid and trapezium", source="dbpedia"} ! distal carpal bone 1
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0008488
name: cremaster muscle
def: "The cremaster muscle is a muscle that covers the testis." [Wikipedia:Cremaster_muscle]
synonym: "cremaster" EXACT [FMA:21531]
synonym: "cremaster muscle" RELATED [Wikipedia:Cremaster_muscle]
synonym: "cremasteric muscle" RELATED [Wikipedia:Cremaster_muscle]
synonym: "muscle of riolan (cremaster)" EXACT [FMA:21531]
synonym: "musculus cremaster" EXACT [FMA:TA]
synonym: "musculus cremaster" RELATED LATIN [Wikipedia:Cremaster_muscle]
synonym: "musculus cremaster " EXACT [FMA:TA]
xref: EMAPA:31250
xref: FMA:21531
xref: http://upload.wikimedia.org/wikipedia/commons/6/67/Gray1143.png
xref: ncithesaurus:Cremaster_Muscle
xref: SCTID:244948006
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0005156 ! reproductive structure
relationship: has_muscle_insertion UBERON:0006650 {source="dbpedia"} ! tunica vaginalis testis
relationship: has_muscle_origin UBERON:0006204 {source="dbpedia"} ! inguinal ligament
relationship: part_of UBERON:0003135 {source="EMAPA"} ! male reproductive organ
[Term]
id: UBERON:0008521
name: gluteus minimus
def: "The gluteus minimus (or glutC&us minimus), the smallest of the three gluteal muscles, is situated immediately beneath the gluteus medius." [Wikipedia:Gluteus_minimus_muscle]
synonym: "glut%c3%a6us minimus" RELATED [Wikipedia:Gluteus_minimus_muscle]
synonym: "glutaeus minimus" RELATED [Wikipedia:Gluteus_minimus_muscle]
synonym: "gluteus minimus" RELATED [Wikipedia:Gluteus_minimus_muscle]
synonym: "gluteus minimus muscle" EXACT []
synonym: "musculus gluteus minimus" RELATED LATIN [Wikipedia:Gluteus_minimus_muscle]
xref: FMA:22317
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG
xref: SCTID:181676004
is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle
relationship: attaches_to UBERON:0002503 {source="FMA"} ! greater trochanter
relationship: has_muscle_insertion UBERON:0002503 {source="dbpedia", notes="Greater trochanter of the femur"} ! greater trochanter
relationship: has_muscle_origin UBERON:0001273 {source="dbpedia", notes="Gluteal surface of ilium under gluteus medius."} ! ilium
relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle
[Term]
id: UBERON:0008522
name: nasal muscle
synonym: "muscle of nose" EXACT [Obol:automatic]
xref: FMA:73758
xref: ncithesaurus:Nasal_Muscle
xref: SCTID:244730009
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0001577 {source="FMA"} ! facial muscle
is_a: UBERON:0003831 ! respiratory system muscle
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000004
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0000004 ! olfactory apparatus
[Term]
id: UBERON:0008523
name: infrahyoid muscle
def: "The infrahyoid muscles are a group of four pairs of muscles in the anterior part of the neck. (The term infrahyoid refers to the region below to the hyoid bone in the neck. ) Collectively, they are referred to as the strap muscles, because the muscles are long and flat much like a strap." [Wikipedia:Infrahyoid_muscles]
synonym: "infrahyoid" RELATED [Wikipedia:Infrahyoid_muscles]
synonym: "infrahyoid muscle" RELATED [Wikipedia:Infrahyoid_muscles]
synonym: "infrahyoidala" RELATED [Wikipedia:Infrahyoid_muscles]
synonym: "musculi infrahyoidei" RELATED LATIN [Wikipedia:Infrahyoid_muscles]
synonym: "strap muscle" RELATED [Wikipedia:Infrahyoid_muscles]
synonym: "strap muscles" RELATED [Wikipedia:Infrahyoid_muscles]
xref: FMA:13338
xref: http://upload.wikimedia.org/wikipedia/commons/4/48/Infrahyoid_muscles.png
xref: SCTID:244829008
is_a: UBERON:0005493 ! hyoid muscle
relationship: has_muscle_nerve UBERON:0005430 {source="dbpedia"} ! ansa cervicalis
[Term]
id: UBERON:0008529
name: piriformis muscle
def: "The piriformis is a muscle in the gluteal region that originates from the anterior (front) part of the sacrum, the part of the spine in the gluteal region, and from the superior margin of the greater sciatic notch (as well as the sacroiliac joint capsule and the sacrotuberous ligament). It exits the pelvis through the greater sciatic foramen to insert on the greater trochanter of the femur. Its tendon often joins with the tendons of the superior gemellus, inferior gemellus, and obturator internus muscles prior to insertion[WP,modified]." [Wikipedia:Piriformis_muscle]
synonym: "m.piriformis" EXACT [FMA:19082]
synonym: "musculus piriformis" RELATED LATIN [Wikipedia:Piriformis_muscle]
synonym: "musculus piriformis" RELATED [Wikipedia:Piriformis_muscle]
synonym: "piriform muscle" RELATED [Wikipedia:Piriformis_muscle]
synonym: "piriformis" EXACT [FMA:19082]
synonym: "piriformis muscle" RELATED [Wikipedia:Piriformis_muscle]
xref: FMA:19082
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG
xref: SCTID:245019009
is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle
relationship: has_muscle_insertion UBERON:0002503 {source="dbpedia"} ! greater trochanter
relationship: has_muscle_origin UBERON:0003690 {source="dbpedia"} ! sacrum
relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle
[Term]
id: UBERON:0008537
name: quadratus femoris
def: "The quadratus femoris is, as its name implies, a flat, quadrilateral skeletal muscle. Located on the posterior side of the hip joint, it is a strong lateral rotator and adductor of the thigh, but also acts to stabilize the femoral head in the Acetabulum." [Wikipedia:Quadratus_femoris_muscle]
synonym: "musculus quadratus femoris" RELATED LATIN [Wikipedia:Quadratus_femoris_muscle]
synonym: "quadratus femoris muscle" RELATED [Wikipedia:Quadratus_femoris_muscle]
xref: FMA:22321
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG
xref: SCTID:245020003
is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle
relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle
[Term]
id: UBERON:0008538
name: muscle of posterior compartment of thigh
def: "The posterior fascial compartment of the thigh contains the knee flexors and hip extensors. It consists of the following muscles: biceps femoris semitendinosus semimembranosus The muscles here (except for the short head of the biceps femoris) are the hamstrings." [Wikipedia:Posterior_compartment_of_thigh]
synonym: "compartimentum femoris posterius" RELATED LATIN [Wikipedia:Posterior_compartment_of_thigh]
synonym: "posterior fascial compartment of thigh" RELATED [Wikipedia:Posterior_compartment_of_thigh]
synonym: "posterior femoral muscle" EXACT [FMA:22427]
synonym: "posterior femoral muscles" RELATED [Wikipedia:Posterior_compartment_of_thigh]
xref: FMA:22427
xref: http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray432_color.png
is_a: UBERON:0004252 {source="FMA"} ! hindlimb stylopod muscle
[Term]
id: UBERON:0008544
name: splenius cervicis
def: "The splenius cervicis (splenius colli) arises by a narrow tendinous band from the spinous processes of the third to the sixth thoracic vertebrae; it is inserted, by tendinous fasciculi, into the posterior tubercles of the transverse processes of the upper two or three cervical vertebrae." [Wikipedia:Splenius_cervicis_muscle]
synonym: "musculus splenius cervicis" RELATED LATIN [Wikipedia:Splenius_cervicis_muscle]
synonym: "splenius cervicis muscle" RELATED [Wikipedia:Splenius_cervicis_muscle]
xref: FMA:22681
xref: http://upload.wikimedia.org/wikipedia/commons/2/26/Musculus_splenius_cervicis.PNG
is_a: UBERON:0002252 {source="FMA"} ! splenius
relationship: has_muscle_insertion UBERON:0001077 {source="dbpedia", notes="transverse processes of C1-C3"} ! transverse process of vertebra
relationship: has_muscle_nerve UBERON:0000962 {notes="Posterior rami of the lower Cervical spinal nerves", source="dbpedia"} ! cervical nerve
[Term]
id: UBERON:0008546
name: iliocostalis cervicis muscle
def: "The iliocostalis cervicis (cervicalis ascendens) arises from the angles of the third, fourth, fifth, and sixth ribs, and is inserted into the posterior tubercles of the transverse processes of the fourth, fifth, and sixth cervical vertebrae.." [Wikipedia:Iliocostalis#Iliocostalis_cervicis]
synonym: "cervicalis ascendens" RELATED [Wikipedia:Iliocostalis]
synonym: "cervicalis ascendens muscle" RELATED [Wikipedia:Iliocostalis]
synonym: "iliocostalis cervicis" RELATED [Wikipedia:Iliocostalis]
xref: FMA:22704
xref: SCTID:244851000
is_a: UBERON:0002251 {source="FMA"} ! iliocostalis muscle
relationship: has_muscle_nerve UBERON:0006839 {source="dbpedia"} ! posterior ramus of spinal nerve
[Term]
id: UBERON:0008549
name: prevertebral muscle
def: "The prevertebral muscles are the muscles located between the prevertebral fascia (older definition) and the vertebral column, i.e. , the longus capitis and longus colli muscles. It also includes the recti capitis anterior and lateralis." [Wikipedia:Prevertebral_muscles]
synonym: "flexor muscle of vertebral column" EXACT [FMA:32514]
xref: FMA:32514
xref: http://upload.wikimedia.org/wikipedia/commons/b/b0/Prevertebral_muscles.png
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column
[Term]
id: UBERON:0008571
name: suprahyoid muscle
def: "The term suprahyoid refers to the region above (superior to) the hyoid bone in the neck. The suprahyoid muscles include digastric, stylohyoid, geniohyoid, and mylohyoid." [Wikipedia:Suprahyoid_muscles]
synonym: "musculi suprahyoidei" RELATED LATIN [Wikipedia:Suprahyoid_muscles]
synonym: "suprahyoid" RELATED [Wikipedia:Suprahyoid_muscles]
synonym: "suprahyoidala" RELATED [Wikipedia:Suprahyoid_muscles]
xref: FMA:46290
xref: http://upload.wikimedia.org/wikipedia/commons/5/58/Suprahyoid_muscles.png
xref: SCTID:244824003
is_a: UBERON:0005493 ! hyoid muscle
[Term]
id: UBERON:0008572
name: posterior crico-arytenoid
def: "The posterior cricoarytenoid muscles are extremely small, paired muscles that extend from the posterior cricoid cartilage to the arytenoid cartilages in the larynx. By rotating the arytenoid cartilages laterally, these muscles abduct the vocal cords and thereby open the rima glottidis. Their action opposes the lateral cricoarytenoid muscles. The posterior cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X). Paralysis of the posterior cricoarytenoid muscles may lead to asphyxiation as they are the only laryngeal muscles to open the true vocal folds, allowing inspiration and expiration." [Wikipedia:Posterior_cricoarytenoid_muscle]
synonym: "cricoaryt%c3%a6noideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle]
synonym: "cricoarytaenoideus posterior" RELATED [Wikipedia:Posterior_cricoarytenoid_muscle]
synonym: "musculus cricoarytenoideus posterior" RELATED LATIN [Wikipedia:Posterior_cricoarytenoid_muscle]
synonym: "posterior cricoarytenoid muscle" EXACT [Wikipedia:Posterior_cricoarytenoid_muscle]
synonym: "posterior cricoarytenoideus" EXACT [FMA:46576]
xref: FMA:46576
xref: http://upload.wikimedia.org/wikipedia/commons/9/9d/Musculuscricoarytenoideusposterior.png
xref: SCTID:244812005
is_a: UBERON:0010932 ! crico-arytenoid muscle
relationship: has_muscle_antagonist UBERON:0008573 {source="dbpedia"} ! lateral crico-arytenoid
relationship: has_muscle_insertion UBERON:0001740 {notes="muscular process of the arytenoid cartilage", source="dbpedia"} ! arytenoid cartilage
relationship: has_muscle_nerve UBERON:0003716 {notes="recurrent laryngeal branch of the vagus", source="dbpedia"} ! recurrent laryngeal nerve
relationship: has_muscle_origin UBERON:0002375 {notes="posterior part of the cricoid", source="dbpedia"} ! cricoid cartilage
[Term]
id: UBERON:0008573
name: lateral crico-arytenoid
def: "The lateral cricoarytenoid (also anterior cricoarytenoid) muscles extend from the lateral cricoid cartilage to the ipsilateral arytenoid cartilage. By rotating the arytenoid cartilages medially, these muscles adduct the vocal cords and thereby close the rima glottidis, protecting the airway. (Their action is antagonistic to that of the posterior cricoarytenoid muscles. ) The lateral cricoarytenoid muscles receive innervation from the recurrent laryngeal branch of the vagus nerve (CN X)." [Wikipedia:Lateral_cricoarytenoid_muscle]
synonym: "cricoaryt%c3%a6noideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle]
synonym: "cricoaryt%c3%a6noideus lateralis muscle" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle]
synonym: "cricoarytaenoideus lateralis" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle]
synonym: "cricoarytaenoideus lateralis muscle" RELATED [Wikipedia:Lateral_cricoarytenoid_muscle]
synonym: "lateral cricoarytenoid muscle" EXACT [Wikipedia:Lateral_cricoarytenoid_muscle]
synonym: "lateral cricoarytenoideus" EXACT [FMA:46579]
synonym: "musculus cricoarytenoideus lateralis" RELATED LATIN [Wikipedia:Lateral_cricoarytenoid_muscle]
xref: FMA:46579
xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Musculuscricoarytenoideuslateralis.png
xref: SCTID:244813000
is_a: UBERON:0010932 ! crico-arytenoid muscle
relationship: has_muscle_antagonist UBERON:0008572 {source="dbpedia"} ! posterior crico-arytenoid
relationship: has_muscle_insertion UBERON:0001740 {notes="muscular process of the arytenoid cartilage", source="dbpedia"} ! arytenoid cartilage
relationship: has_muscle_nerve UBERON:0003716 {notes="recurrent laryngeal branch of the vagus", source="dbpedia"} ! recurrent laryngeal nerve
relationship: has_muscle_origin UBERON:0002375 {notes="lateral part of the arch of the cricoid", source="dbpedia"} ! cricoid cartilage
[Term]
id: UBERON:0008574
name: transverse arytenoid
def: "The tranverse arytenoid crosses transversely between the two cartilages. It is an unpaired muscle running from one arytenoid to another to pull the arytenoids together." [Wikipedia:Arytenoid_muscle]
synonym: "arytenoid transversus" RELATED []
synonym: "tranverse arytenoid muscle" RELATED [Wikipedia:Transverse_arytenoid]
xref: FMA:46582
is_a: UBERON:0010958 ! arytenoid muscle
[Term]
id: UBERON:0008575
name: oblique arytenoid
def: "The oblique arytenoid, the more superficial Arytenoid muscle, forms two fasciculi, which pass from the base of one cartilage to the apex of the opposite one, and therefore cross each other like the limbs of the letter X; a few fibers are continued around the lateral margin of the cartilage, and are prolonged into the aryepiglottic fold; they are sometimes described as a separate muscle, the Aryepiglotticus. The aryepiglottic muscle together with the transverse arytenoid and the thyroarytenoid work as a sphincter and close the larynx as we swallow or cough. Its innervation is by the recurrent laryngeal nerve (from vagus) just like all the intrinsic muscles of the larynx except the cricothyroid muscle." [Wikipedia:Oblique_arytenoid_muscle]
synonym: "arytenoid obliquus" RELATED []
synonym: "oblique arytenoid muscle" RELATED [Wikipedia:Oblique_arytenoid]
xref: FMA:46583
xref: SCTID:244817004
is_a: UBERON:0010958 ! arytenoid muscle
[Term]
id: UBERON:0008576
name: thyro-arytenoid
def: "The Thyroarytenoid is a broad, thin, muscle which lies parallel with and lateral to the vocal fold, and supports the wall of the ventricle and its appendix. It functions in fine tonal control of the vocal cords." [Wikipedia:Thyroarytenoid_muscle]
synonym: "musculus thyroarytenoideus" RELATED LATIN [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyreoaryt%c3%a6noideus" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyreoaryt%c3%a6noideus muscle" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyreoarytaenoideus" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyreoarytaenoideus muscle" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyreoepiglotticus" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyro-arytenoid %26 vocalis" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyro-arytenoid muscle" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyroaryt%c3%a6noideus" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyroarytenoid" EXACT [Wikipedia:Thyroarytenoid_muscle]
synonym: "thyroarytenoid muscle" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "ventricularis" RELATED [Wikipedia:Thyroarytenoid_muscle]
synonym: "ventricularis muscle" RELATED [Wikipedia:Thyroarytenoid_muscle]
xref: FMA:46588
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png
xref: ncithesaurus:Thyroarytenoid_Muscle
xref: SCTID:361814004
is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle
relationship: has_muscle_insertion UBERON:0001740 {notes="Anterior surface of arytenoid cartilage", source="dbpedia"} ! arytenoid cartilage
relationship: has_muscle_nerve UBERON:0003716 {notes="recurrent laryngeal branch of the vagus", source="dbpedia"} ! recurrent laryngeal nerve
relationship: has_muscle_origin UBERON:0001738 {notes="Inner surface of the thyroid cartilage", source="dbpedia"} ! thyroid cartilage
relationship: part_of UBERON:0001737 {source="FMA"} ! larynx
[Term]
id: UBERON:0008577
name: vocalis muscle
def: "The vocal muscle is the upper portion of the thyroarytenoid muscle which is primarily involved in producing speech." [Wikipedia:Vocal_muscle]
synonym: "musculus vocalis" RELATED LATIN [Wikipedia:Vocal_muscle]
synonym: "vocal muscle" EXACT [FMA:46591]
synonym: "vocalis" EXACT []
xref: FMA:46591
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png
xref: ncithesaurus:Vocalis_Muscle
xref: SCTID:244820007
is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle
relationship: part_of UBERON:0001737 {source="FMA"} ! larynx
relationship: part_of UBERON:0008576 {source="Wikipedia"} ! thyro-arytenoid
[Term]
id: UBERON:0008582
name: superior longitudinal muscle of tongue
def: "The Longitudinalis linguC& superior (Superior lingualis) is a thin stratum of oblique and longitudinal fibers immediately underlying the mucous membrane on the dorsum of the tongue." [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "longitudinalis lingu%c3%a6 superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "longitudinalis linguae superior" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "musculus longitudinalis superior" EXACT [FMA:46693]
synonym: "musculus longitudinalis superior linguae" RELATED LATIN [Wikipedia:Superior_longitudinal_muscle_of_tongue]
synonym: "superior longitudinal muscle" RELATED [Wikipedia:Superior_longitudinal_muscle_of_tongue]
xref: FMA:46693
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Musculuslongitudinalissuperiorlinguae.png
xref: SCTID:244790006
is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue
relationship: has_muscle_insertion UBERON:0001723 {notes="edges of the tongue", source="dbpedia"} ! tongue
relationship: has_muscle_nerve UBERON:0001650 {source="dbpedia"} ! hypoglossal nerve
[Term]
id: UBERON:0008583
name: transverse muscle of tongue
def: "The Transversus linguC& (tansverse lingualis) is a muscle of the tongue. It consists of fibers which arise from the median fibrous septum and pass lateralward to be inserted into the submucous fibrous tissue at the sides of the tongue." [Wikipedia:Transverse_muscle_of_tongue]
synonym: "intrinsic tongue muscle transverse component" EXACT [MA:0002328]
synonym: "musculus transversus linguae" RELATED LATIN [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transverse lingual muscle" EXACT [FMA:46695]
synonym: "transverse muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transversus lingu%c3%a6" RELATED [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transversus linguae" RELATED [Wikipedia:Transverse_muscle_of_tongue]
synonym: "transversus muscle" RELATED [Wikipedia:Transverse_muscle_of_tongue]
xref: FMA:46695
xref: http://upload.wikimedia.org/wikipedia/commons/1/14/Musculustransversuslinguae.png
xref: MA:0002328
xref: ncithesaurus:Intrinsic_Tongue_Muscle_Transverse_Component
xref: SCTID:244792003
is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue
relationship: has_muscle_insertion UBERON:0001723 {source="dbpedia", notes="sides of the tongue"} ! tongue
relationship: has_muscle_nerve UBERON:0001650 {source="dbpedia"} ! hypoglossal nerve
[Term]
id: UBERON:0008584
name: vertical muscle of tongue
def: "The Verticalis linguC& (Vertical lingualis) is found only at the borders of the forepart of the tongue. Its fibers extend from the upper to the under surface of the organ." [Wikipedia:Vertical_muscle_of_tongue]
synonym: "intrinsic tongue muscle vertical component" EXACT [MA:0002329]
synonym: "musculus verticalis linguae" RELATED LATIN [Wikipedia:Vertical_muscle_of_tongue]
synonym: "vertical lingual muscle" EXACT [FMA:46696]
synonym: "vertical muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis lingu%c3%a6" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis lingu%c3%a6 muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis linguae" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis linguae muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
synonym: "verticalis muscle" RELATED [Wikipedia:Vertical_muscle_of_tongue]
xref: FMA:46696
xref: http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray1020.png
xref: MA:0002329
xref: ncithesaurus:Intrinsic_Tongue_Muscle_Vertical_Component
xref: SCTID:244793008
is_a: UBERON:0001576 {source="FMA"} ! intrinsic muscle of tongue
relationship: has_muscle_insertion UBERON:0007373 {notes="Inferior surface borders of tongue", source="dbpedia"} ! inferior surface of tongue
relationship: has_muscle_nerve UBERON:0001650 {source="dbpedia"} ! hypoglossal nerve
relationship: has_muscle_origin UBERON:0009471 {source="dbpedia", notes="Submucosal fibrous layer of dorsum of tongue"} ! dorsum of tongue
[Term]
id: UBERON:0008585
name: levator veli palatini
def: "The levator veli palatini is the elevator muscle of the velum palatinum in the human body. During swallowing, it contracts, elevating the soft palate to help prevent food from entering the nasopharynx. It is innervated via the pharyngeal plexus, primarily by the vagus nerve (CN X). The levator veli palatini (Levator palati) is a thick, rounded muscle situated lateral to the choanC&. It arises from the under surface of the apex of the petrous part of the temporal bone and from the medial lamina of the cartilage of the auditory tube. After passing above the upper concave margin of the Constrictor pharyngis superior it spreads out in the palatine velum, its fibers extending obliquely downward and medially to the middle line, where they blend with those of the opposite side." [Wikipedia:Levator_veli_palatini]
synonym: "levator palati" RELATED [Wikipedia:Levator_veli_palatini]
synonym: "levator veli" RELATED [Wikipedia:Levator_veli_palatini]
synonym: "levator veli palatini muscle" RELATED [Wikipedia:Levator_veli_palatini]
synonym: "levator velum palatini muscle" RELATED [Wikipedia:Levator_veli_palatini]
synonym: "musculus levator veli palatini" RELATED LATIN [Wikipedia:Levator_veli_palatini]
xref: FMA:46727
xref: http://upload.wikimedia.org/wikipedia/commons/a/a5/Musculuslevatorvelipalatini.png
xref: SCTID:244795001
property_value: UBPROP:0000001 "The levator veli palatini is part of the soft palate that attaches to the cranial base, pharyngotympanic tube and the soft palate and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED]" xsd:string
is_a: UBERON:0003682 {source="FMA"} ! palatal muscle
relationship: has_muscle_nerve UBERON:0000929 {notes="Pharyngeal Branch of Vagus", source="dbpedia"} ! pharyngeal branch of vagus nerve
relationship: has_muscle_origin UBERON:0001678 {source="dbpedia"} ! temporal bone
[Term]
id: UBERON:0008586
name: tensor veli palatini
def: "The tensor veli palatini (tensor palati) is a broad, thin, ribbon-like muscle in the head that tenses the soft palate." [Wikipedia:Tensor_veli_palatini_muscle]
synonym: "musculus tensor veli palatini" RELATED LATIN [Wikipedia:Tensor_veli_palatini_muscle]
synonym: "tensor palati" RELATED [Wikipedia:Tensor_veli_palatini_muscle]
synonym: "tensor palati muscle" RELATED [Wikipedia:Tensor_veli_palatini_muscle]
synonym: "tensor veli palatini" RELATED [Wikipedia:Tensor_veli_palatini_muscle]
synonym: "tensor veli palatini muscle" EXACT []
xref: FMA:46730
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Musculustensorvelipalatini.png
xref: SCTID:361815003
property_value: UBPROP:0000001 "The tensor veli palatini is a muscle of the soft palate that attaches to the cranial base and pharyngotympanic tube, wraps around the pterygoid hamulus and then attaches to the midline palatal raphe of the soft palate that is innervated by cranial nerve V3.[FEED]" xsd:string
is_a: UBERON:0003682 {source="FMA"} ! palatal muscle
relationship: has_muscle_nerve UBERON:0000375 {notes="medial pterygoid of mandibular nerve", source="dbpedia"} ! mandibular nerve
[Term]
id: UBERON:0008588
name: procerus
def: "The Procerus is a small pyramidal slip of muscle deep to the superior orbital nerve, artery and vein." [Wikipedia:Procerus_muscle]
synonym: "depressor glabellae" RELATED [Wikipedia:Procerus_muscle]
synonym: "musculus procerus, pyramidalis nasi, depressor glabellae" RELATED LATIN [Wikipedia:Procerus_muscle]
synonym: "procerus muscle" RELATED [Wikipedia:Procerus_muscle]
synonym: "pyramidalis nasi" RELATED [Wikipedia:Procerus_muscle]
xref: FMA:46769
xref: http://upload.wikimedia.org/wikipedia/commons/7/76/Procerus.png
xref: SCTID:244731008
is_a: UBERON:0008522 {source="FMA"} ! nasal muscle
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia", notes="Temporal Branch of the facial nerve"} ! facial nerve
[Term]
id: UBERON:0008589
name: depressor septi nasi
def: "The depressor septi (Depressor alE nasi) arises from the incisive fossa of the maxilla. Its fibers ascend to be inserted into the nasal septum and back part of the alar part of nasalis muscle. It lies between the mucous membrane and muscular structure of the lip." [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "depressor al%c3%a6 nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "depressor alae nasi" RELATED [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "depressor septi" EXACT [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "depressor septi nasi muscle" RELATED [Wikipedia:Depressor_septi_nasi_muscle]
synonym: "musculus depressor septi nasi" RELATED LATIN [Wikipedia:Depressor_septi_nasi_muscle]
xref: FMA:46777
xref: http://upload.wikimedia.org/wikipedia/commons/6/6c/Musculusdepressorseptinasi.PNG
xref: SCTID:244733006
is_a: UBERON:0008522 {source="FMA"} ! nasal muscle
relationship: has_muscle_nerve UBERON:0001647 {notes="Buccal branch of the facial nerve", source="dbpedia"} ! facial nerve
relationship: has_muscle_origin UBERON:0002397 {source="dbpedia", notes="incisive fossa of the maxilla"} ! maxilla
[Term]
id: UBERON:0008591
name: depressor supercilii
def: "The Depressor Supercilii is an eye muscle of the human body. The nature of this muscle is in some dispute. Few printed anatomies include it (Netter, et al. ) and many authorities consider it to be part of the orbicularis oculi muscle . On the other hand, many dermatologists, ophthalmologists and plastic surgeons hold that the depressor supercilli is a distinct muscle and has a definite, individual effect on the movement of the eybrow and skin of the glabella." [Wikipedia:Depressor_supercilii_muscle]
synonym: "depressor supercilii muscle" RELATED [Wikipedia:Depressor_supercilii_muscle]
synonym: "musculus depressor supercilii" RELATED LATIN [Wikipedia:Depressor_supercilii_muscle]
xref: FMA:46798
xref: http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png
xref: SCTID:244728007
is_a: UBERON:0001577 {source="FMA"} ! facial muscle
relationship: has_muscle_insertion UBERON:0001697 {source="dbpedia", notes="Medial aspect of bony orbit"} ! orbital region
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia"} ! facial nerve
[Term]
id: UBERON:0008592
name: levator labii superioris alaeque nasi
def: "The levator labii superioris alaeque nasi muscle is, translated from Latin, the \"lifter of the upper lip and of the wing of the nose\". It has the longest name of any muscle in an animal." [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle]
synonym: "alaeque" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle]
synonym: "elvis muscle" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle]
synonym: "levator labii superioris alaequae nasi muscle" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle]
synonym: "levator labii superioris alaeque nasi" RELATED [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle]
synonym: "musculus levator labii superioris alaequae nasi" RELATED LATIN [Wikipedia:Levator_labii_superioris_alaeque_nasi_muscle]
xref: FMA:46802
xref: http://upload.wikimedia.org/wikipedia/commons/1/1c/Musculuslevatorlabiisuperiorisalaequenasi.png
is_a: UBERON:0001577 {source="FMA"} ! facial muscle
relationship: has_muscle_insertion UBERON:0001834 {source="dbpedia", notes="nostril and upper lip"} ! upper lip
relationship: has_muscle_insertion UBERON:0005928 {source="dbpedia", notes="nostril and upper lip"} ! external naris
relationship: has_muscle_nerve UBERON:0001647 {notes="buccal branch of facial nerve CN VII", source="dbpedia"} ! facial nerve
relationship: has_muscle_origin UBERON:0002397 {source="dbpedia"} ! maxilla
[Term]
id: UBERON:0008593
name: zygomaticus major
def: "The Zygomatic major is a muscle of the human body. It is a muscle of facial expression which draws the angle of the mouth superiorly and posteriorly. Like all muscles of facial expression, the zygomatic major is innervated by the facial nerve (Cranial Nerve VII). The Zygomaticus extends from each zygomatic arch to the corners of the mouth. It raises the corners of the mouth when a person smiles. Dimples may be caused by variations in the structure of this muscle." [Wikipedia:Zygomaticus_major_muscle]
synonym: "musculus zygomaticus major" RELATED LATIN [Wikipedia:Zygomaticus_major_muscle]
synonym: "zygomatic major" RELATED [Wikipedia:Zygomaticus_major_muscle]
synonym: "zygomatic major muscle" RELATED [Wikipedia:Zygomaticus_major_muscle]
synonym: "zygomatic muscle" RELATED [Wikipedia:Zygomaticus_major_muscle]
synonym: "zygomaticcus major" RELATED [Wikipedia:Zygomaticus_major_muscle]
synonym: "zygomaticus major" RELATED [Wikipedia:Zygomaticus_major_muscle]
xref: FMA:46810
xref: http://upload.wikimedia.org/wikipedia/commons/7/7e/Zygomaticus.png
xref: ncithesaurus:Zygomaticus_Major
xref: SCTID:244739005
xref: SCTID:244740007
is_a: UBERON:0001577 ! facial muscle
is_a: UBERON:0010437 ! zygomaticus muscle
relationship: has_muscle_insertion UBERON:0011386 ! facial modiolus
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia", notes="zygomatic branch of facial nerve"} ! facial nerve
[Term]
id: UBERON:0008594
name: zygomaticus minor
def: "The zygomaticus minor is a muscle of facial expression. It originates from malar bone and continues with orbicularis oculi on the lateral face of the Levator labii superioris and then inserts into the outer part of the upper lip. Do not confuse this with the Zygomaticus major, which insets into the angle of the mouth. It draws the upper lip backward, upward, and outward (used in making sad facial expressions). </gallery> Like all muscles of facial expression, it is innervated by the facial nerve (CN VII)." [Wikipedia:Zygomaticus_minor_muscle]
synonym: "zygomaticus minor" RELATED [Wikipedia:Zygomaticus_minor_muscle]
xref: FMA:46811
xref: http://upload.wikimedia.org/wikipedia/commons/4/46/Musculuszygomaticusminor.png
xref: ncithesaurus:Zygomaticus_Minor
xref: SCTID:244741006
is_a: UBERON:0001577 ! facial muscle
is_a: UBERON:0010437 ! zygomaticus muscle
relationship: has_muscle_insertion UBERON:0001458 {notes="skin of the upper lip", source="dbpedia"} ! skin of lip
relationship: has_muscle_insertion UBERON:0001834 {notes="skin of the upper lip", source="dbpedia"} ! upper lip
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia"} ! facial nerve
relationship: has_muscle_origin UBERON:0001683 {source="dbpedia"} ! zygomatic bone
[Term]
id: UBERON:0008595
name: levator anguli oris
def: "The levator anguli oris (caninus) is a facial muscle of the mouth arising from the canine fossa, immediately below the infraorbital foramen. Its fibers are inserted into the angle of the mouth, intermingling with those of the Zygomaticus, Triangularis, and Orbicularis oris." [Wikipedia:Levator_anguli_oris_muscle]
synonym: "caninus" RELATED [Wikipedia:Levator_anguli_oris]
synonym: "caninus muscle" RELATED [Wikipedia:Levator_anguli_oris]
synonym: "levator anguli oris" RELATED [Wikipedia:Levator_anguli_oris]
synonym: "levator anguli oris muscle" RELATED [Wikipedia:Levator_anguli_oris]
synonym: "musculus levator anguli oris" RELATED [Wikipedia:Levator_anguli_oris]
xref: FMA:46822
xref: SCTID:141501002
is_a: UBERON:0001577 {source="FMA"} ! facial muscle
relationship: has_muscle_insertion UBERON:0011386 ! facial modiolus
relationship: has_muscle_nerve UBERON:0001647 {notes="buccal branches", source="dbpedia"} ! facial nerve
relationship: has_muscle_origin UBERON:0002397 {source="dbpedia"} ! maxilla
[Term]
id: UBERON:0008596
name: mentalis
def: "The Mentalis is a paired central muscle of the lower lip, situated at the tip of the chin. It raises and pushes up the lower lip, causing wrinkling of the chin, as in doubt or displeasure. It is ometimes referred to as the \"pouting muscle. \" Its fibers arise from the incisive fossa of the mandible, then course vertically downward to insert in the skin of the chin. A movement disorder of the mentalis muscle is Geniospasm which is a benign but socially excluding genetic disorder." [Wikipedia:Mentalis]
synonym: "mentalis muscle" EXACT [Wikipedia:Mentalis]
synonym: "musculus mentalis" RELATED LATIN [Wikipedia:Mentalis]
synonym: "musculus mentalis" RELATED [Wikipedia:Mentalis]
xref: FMA:46825
xref: http://upload.wikimedia.org/wikipedia/commons/3/37/Mentalis.png
xref: SCTID:244744003
is_a: UBERON:0001577 {source="FMA"} ! facial muscle
relationship: has_muscle_insertion UBERON:0008199 {source="dbpedia"} ! chin
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia", notes="mandibular branch"} ! facial nerve
relationship: has_muscle_origin UBERON:0001684 {source="dbpedia"} ! mandible
[Term]
id: UBERON:0008597
name: depressor anguli oris muscle
def: "The Depressor anguli oris (Triangularis) arises from the oblique line of the mandible, whence its fibers converge, to be inserted, by a narrow fasciculus, into the angle of the mouth." [Wikipedia:Depressor_anguli_oris_muscle]
synonym: "depressor anguli oris" RELATED [Wikipedia:Depressor_anguli_oris_muscle]
synonym: "musculus depressor anguli oris" RELATED LATIN [Wikipedia:Depressor_anguli_oris_muscle]
synonym: "triangularis" RELATED [Wikipedia:Depressor_anguli_oris_muscle]
synonym: "triangularis muscle" RELATED [Wikipedia:Depressor_anguli_oris_muscle]
xref: FMA:46828
xref: http://upload.wikimedia.org/wikipedia/commons/3/36/Gray381.png
xref: SCTID:361812000
is_a: UBERON:0001577 {source="FMA"} ! facial muscle
relationship: has_muscle_insertion UBERON:0011386 {notes="modiolus of mouth", source="dbpedia"} ! facial modiolus
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia", notes="mandibular branch"} ! facial nerve
relationship: has_muscle_origin UBERON:0001684 {notes="tubercle of mandible", source="dbpedia"} ! mandible
[Term]
id: UBERON:0008598
name: risorius muscle
def: "The risorius arises in the fascia over the parotid gland and, passing horizontally forward, superficial to the platysma, inserts onto the skin at the angle of the mouth. It is a narrow bundle of fibers, broadest at its origin, but varies much in its size and form." [Wikipedia:Risorius]
synonym: "musculus risorius" RELATED LATIN [Wikipedia:Risorius]
synonym: "risorius" EXACT [Wikipedia:Risorius]
xref: FMA:46838
xref: http://upload.wikimedia.org/wikipedia/commons/a/af/Musculusrisorius.png
xref: SCTID:244755003
is_a: UBERON:0001577 {source="FMA"} ! facial muscle
relationship: has_muscle_insertion UBERON:0011386 ! facial modiolus
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia", notes="buccal branch"} ! facial nerve
relationship: has_muscle_origin UBERON:0001831 {source="dbpedia"} ! parotid gland
[Term]
id: UBERON:0008603
name: helicis major
def: "The Helicis major is a narrow vertical band situated upon the anterior margin of the helix. It arises below, from the spina helicis, and is inserted into the anterior border of the helix, just where it is about to curve backward." [Wikipedia:Helicis_major]
synonym: "helicis major muscle" RELATED []
synonym: "musculus helicis major" EXACT LATIN [Wikipedia:Helicis_major]
xref: FMA:48968
xref: http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png
xref: SCTID:244764008
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
[Term]
id: UBERON:0008604
name: helicis minor
def: "The Helicis minor is an oblique fasciculus, covering the crus helicis." [Wikipedia:Helicis_minor]
synonym: "helicis minor muscle" RELATED []
synonym: "musculus helicis minor" RELATED LATIN [Wikipedia:Helicis_minor]
xref: FMA:48971
xref: http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png
xref: SCTID:244765009
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
[Term]
id: UBERON:0008605
name: tragicus muscle
def: "The Tragicus is a short, flattened vertical band on the lateral surface of the tragus." [Wikipedia:Tragicus]
synonym: "musculus tragicus" RELATED LATIN [Wikipedia:Tragicus]
synonym: "tragicus" EXACT [FMA:48974]
synonym: "tragicus muscle" RELATED []
xref: FMA:48974
xref: http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png
xref: SCTID:244766005
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
[Term]
id: UBERON:0008606
name: antitragicus muscle
def: "The Antitragicus arises from the outer part of the antitragus, and is inserted into the cauda helicis and antihelix." [Wikipedia:Antitragicus]
synonym: "antitragicus muscle" RELATED []
synonym: "musculus antitragicus" RELATED LATIN [Wikipedia:Antitragicus]
xref: FMA:48980
xref: http://upload.wikimedia.org/wikipedia/commons/5/58/Musculusantitragicus.png
xref: SCTID:63899000
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
[Term]
id: UBERON:0008607
name: transverse muscle of auricle
def: "The transverse muscle of auricle is placed on the cranial surface of the pinna. It consists of scattered fibers, partly tendinous and partly muscular, extending from the eminentia conchae to the prominence corresponding with the scapha." [Wikipedia:Transverse_muscle_of_auricle]
synonym: "musculus transversus auriculae" RELATED LATIN [Wikipedia:Transverse_muscle_of_auricle]
synonym: "transverse muscle of pinna" EXACT [FMA:48983]
synonym: "transversus auriculae" EXACT [Wikipedia:Transverse_muscle_of_auricle]
synonym: "transversus auricularis" EXACT [FMA:48983]
xref: FMA:48983
xref: http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png
xref: SCTID:244767001
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
[Term]
id: UBERON:0008608
name: oblique muscle of auricle
def: "The oblique muscle of auricle, on the cranial surface, consists of a few fibers extending from the upper and back part of the concha to the convexity immediately above it." [Wikipedia:Oblique_muscle_of_auricle]
synonym: "musculus obliquus auriculae" RELATED LATIN [Wikipedia:Oblique_muscle_of_auricle]
synonym: "oblique muscle of pinna" EXACT [FMA:48986]
synonym: "obliquus auricul%c3%a6" RELATED [Wikipedia:Oblique_muscle_of_auricle]
synonym: "obliquus auriculae" EXACT [Wikipedia:Oblique_muscle_of_auricle]
synonym: "obliquus auricularis muscle" EXACT [FMA:48986]
xref: FMA:48986
xref: http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png
xref: SCTID:244768006
is_a: UBERON:0001596 {source="FMA"} ! intrinsic auricular muscle
[Term]
id: UBERON:0008609
name: transversus menti muscle
def: "The transversus menti, or transverse muscle of the chin, is a facial muscle that is often considered to be the superficial fibers of the depressor anguli oris muscle which cross to the other side of the face." [Wikipedia:Transverse_muscle_of_the_chin]
synonym: "musculus transversus menti" RELATED LATIN [Wikipedia:Transverse_muscle_of_the_chin]
synonym: "transverse menti" EXACT [FMA:49080]
synonym: "transversus menti" RELATED [Wikipedia:Transverse_muscle_of_the_chin]
xref: FMA:49080
xref: http://upload.wikimedia.org/wikipedia/commons/3/36/Gray381.png
is_a: UBERON:0001577 {source="FMA"} ! facial muscle
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia"} ! facial nerve
[Term]
id: UBERON:0008611
name: scalene muscle
def: "Any of the three pairs of muscles in the lateral neck, namely the scalenus anterior, scalenus medius, and scalenus posterior. They are innervated by the spinal nerves C4-C8[WP]." [Wikipedia:Scalene_muscles]
synonym: "lateral cervical muscle" RELATED [Wikipedia:Scalene_muscles]
synonym: "lateral cervical muscles" RELATED [Wikipedia:Scalene_muscles]
synonym: "lateral vertebral muscle" RELATED [Wikipedia:Scalene_muscles]
synonym: "m scalenus" RELATED [Wikipedia:Scalene_muscles]
synonym: "scalene muscle" RELATED [Wikipedia:Scalene_muscles]
synonym: "scalene muscles" EXACT [Wikipedia:Scalene_muscles]
synonym: "scalenes" RELATED [Wikipedia:Scalene_muscles]
synonym: "scaleni" RELATED [Wikipedia:Scalene_muscles]
synonym: "scalenus" RELATED [Wikipedia:Scalene_muscles]
synonym: "scalenus muscle" EXACT [FMA:64829]
xref: FMA:64829
xref: http://upload.wikimedia.org/wikipedia/commons/6/6e/Scalenus.png
xref: ncithesaurus:Scalene_Muscle
xref: SCTID:244843003
is_a: UBERON:0002377 {source="FMA"} ! muscle of neck
is_a: UBERON:0004518 ! muscle of vertebral column
relationship: has_muscle_insertion UBERON:0004601 {source="dbpedia", notes="first and second ribs"} ! rib 1
relationship: has_muscle_insertion UBERON:0004602 {source="dbpedia", notes="first and second ribs"} ! rib 2
relationship: has_muscle_origin UBERON:0002413 {source="dbpedia"} ! cervical vertebra
[Term]
id: UBERON:0008612
name: muscle of pelvic diaphragm
def: "The pelvic floor or pelvic diaphragm is composed of muscle fibers of the levator ani, the coccygeus, and associated connective tissue which span the area underneath the pelvis. The pelvic diaphragm is a muscular partition formed by the levatores ani and coccygei, with which may be included the parietal pelvic fascia on their upper and lower aspects. The pelvic floor separates the pelvic cavity above from the perineal region below. The right and left levator ani lie almost horizontally in the floor of the pelvis, separated by a narrow gap that transmits the urethra, vagina, and anal canal. The levator ani is usually considered in three parts: pubococcygeus, puborectalis, and iliococcygeus. The pubococcygeus, the main part of the levator, runs backward from the body of the pubis toward the coccyx and may be damaged during parturition. Some fibers are inserted into the prostate, urethra, and vagina. The right and left puborectalis unite behind the anorectal junction to form a muscular sling . Some regard them as a part of the sphincter ani externus. The iliococcygeus, the most posterior part of the levator ani, is often poorly developed. The coccygeus, situated behind the levator ani and frequently tendinous as much as muscular, extends from the ischial spine to the lateral margin of the sacrum and coccyx. The pelvic cavity of the true pelvis has the pelvic floor as its inferior border (and the pelvic brim as its superior border. ) The perineum has the pelvic floor as its superior border. Some sources do not consider \"pelvic floor\" and \"pelvic diaphragm\" to be identical, with the \"diaphragm\" consisting of only the levator ani and coccygeus, while the \"floor\" also includes the perineal membrane and deep perineal pouch. However, other sources include the fascia as part of the diaphragm. In practice, the two terms are often used interchangeably. Inferiorly, the pelvic floor extends into the anal triangle." [Wikipedia:Pelvic_floor]
synonym: "diaphragm of the pelvis" RELATED [Wikipedia:Pelvic_floor]
synonym: "diaphragma pelvis" RELATED LATIN [Wikipedia:Pelvic_floor]
synonym: "muscle of pelvic floor" EXACT [FMA:64856]
synonym: "pelvic diaphragm" RELATED [Wikipedia:Pelvic_floor]
synonym: "pelvic diaphragm muscle" EXACT [FMA:64856]
synonym: "pelvic floor muscles" RELATED [Wikipedia:Pelvic_floor]
synonym: "pelvic muscles" RELATED [Wikipedia:Pelvic_floor]
xref: FMA:64856
xref: http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png
xref: ncithesaurus:Pelvic_Floor_Muscle
xref: SCTID:367748001
is_a: UBERON:0001325 {source="FMA"} ! muscle of pelvis
[Term]
id: UBERON:0008617
name: innermost intercostal muscle
def: "The Innermost intercostal muscle is a layer of intercostal muscle beneath the intercostal nerves and internal intercostal muscles. These are divided into transversus thoracis anteriorly, lateral muscle slips laterally and subcostalis posteriorly." [Wikipedia:Innermost_intercostal_muscle]
synonym: "musculus intercostalis intimus" RELATED [Wikipedia:Innermost_intercostal_muscle]
synonym: "musculus intercostalis intimus" RELATED LATIN [Wikipedia:Innermost_intercostal_muscle]
xref: FMA:9758
xref: SCTID:368054008
is_a: UBERON:0001111 {source="FMA"} ! intercostal muscle
relationship: has_muscle_insertion UBERON:0002228 {notes="Inferior border of the rib above", source="dbpedia"} ! rib
relationship: has_muscle_nerve UBERON:0003727 {source="dbpedia"} ! intercostal nerve
relationship: has_muscle_origin UBERON:0002228 {source="dbpedia", notes="Upper border of a rib"} ! rib
[Term]
id: UBERON:0008618
name: subcostal muscle
def: "The Subcostales (Infracostales) consist of muscular and aponeurotic fasciculi, which are usually well-developed only in the lower part of the thorax; each originates from the inner surface of one rib, and is inserted into the inner surface of the second or third rib above, near its angle. Their fibers run in the same direction as those of the Intercostales interni." [Wikipedia:Subcostalis_muscle]
synonym: "musculus subcostalis" RELATED LATIN [Wikipedia:Subcostalis_muscle]
synonym: "subcostal muscles" RELATED [Wikipedia:Subcostalis_muscle]
synonym: "subcostales" RELATED [Wikipedia:Subcostalis_muscle]
synonym: "subcostales muscle" RELATED [Wikipedia:Subcostalis_muscle]
synonym: "subcostales muscles" RELATED [Wikipedia:Subcostalis_muscle]
synonym: "subcostalis" RELATED [Wikipedia:Subcostalis_muscle]
xref: FMA:9759
xref: SCTID:244914005
is_a: UBERON:0002426 {source="FMA"} ! chest muscle
relationship: has_muscle_insertion UBERON:0002228 {notes="inner surface of the second or third rib below near its angle", source="dbpedia"} ! rib
relationship: has_muscle_nerve UBERON:0003727 {source="dbpedia"} ! intercostal nerve
relationship: has_muscle_origin UBERON:0002228 {notes="inner surface of one rib", source="dbpedia"} ! rib
[Term]
id: UBERON:0008622
name: scalenus anterior
def: "The Scalenus anterior (Scalenus anticus), also known as anterior scalene muscle, lies deeply at the side of the neck, behind the Sternocleidomastoideus. It arises from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrC&, and descending, almost vertically, is inserted by a narrow, flat tendon into the scalene tubercle on the inner border of the first rib, and into the ridge on the upper surface of the rib in front of the subclavian groove." [Wikipedia:Scalenus_anterior]
synonym: "anterior scalene" EXACT [Wikipedia:Scalenus_anterior]
synonym: "musculus scalenus anterior" RELATED LATIN [Wikipedia:Scalenus_anterior]
synonym: "scalenus anterior muscle" RELATED [Wikipedia:Scalenus_anterior]
synonym: "scalenus anticus" RELATED [Wikipedia:Scalenus_anterior]
xref: FMA:13385
xref: http://upload.wikimedia.org/wikipedia/commons/b/bf/Scalenus_anterior.png
xref: SCTID:181742002
is_a: UBERON:0008611 {source="FMA"} ! scalene muscle
relationship: has_muscle_insertion UBERON:0004601 {source="dbpedia"} ! rib 1
relationship: has_muscle_origin UBERON:0002413 {source="dbpedia"} ! cervical vertebra
[Term]
id: UBERON:0008712
name: stylohyoid muscle
def: "The stylohyoid muscle is a slender muscle, lying anterior, and superior of the posterior belly of the digastric muscle. It shares this muscle's innervation by the facial nerve." [Wikipedia:Stylohyoid_muscle]
synonym: "musculus stylohyoideus" RELATED []
synonym: "musculus stylohyoideus" RELATED LATIN [Wikipedia:Stylohyoid_muscle]
synonym: "stylohyoid" RELATED [Wikipedia:Stylohyoid_muscle]
synonym: "stylohyoideus" RELATED [Wikipedia:Stylohyoid_muscle]
synonym: "stylohyoideus muscle" RELATED [Wikipedia:Stylohyoid_muscle]
synonym: "stylohyoideus muscles" RELATED [Wikipedia:Stylohyoid_muscle]
xref: FMA:9625
xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Musculi_colli_stylohyoideus.svg
xref: SCTID:244826001
property_value: UBPROP:0000001 "The stylohyoid is a pharyngeal arch II muscle that participates in oral/pharygeal behaviors and is innervated by the stylohoid branch of the facial nerve and attaches to the stylohyal.[FEED]" xsd:string
is_a: UBERON:0001577 ! facial muscle
is_a: UBERON:0008571 {source="FMA"} ! suprahyoid muscle
relationship: has_muscle_insertion UBERON:0003997 {source="dbpedia", notes="greater cornu of hyoid bone"} ! hyoid bone greater horn
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia"} ! facial nerve
relationship: has_muscle_origin UBERON:0003960 {source="dbpedia"} ! styloid process of temporal bone
[Term]
id: UBERON:0008713
name: pectoral girdle and thoracic body wall skeletal muscle
xref: EHDAA2:0001421
xref: RETIRED_EHDAA2:0001422
is_a: UBERON:0001134 ! skeletal muscle tissue
[Term]
id: UBERON:0008715
name: muscle tissue of prostate
synonym: "prostate gland muscle tissue" EXACT [OBOL:automatic]
synonym: "prostate muscle tissue" EXACT [OBOL:automatic]
xref: ncithesaurus:Prostatic_Muscular_Tissue
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002385 ! muscle tissue
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0002367
intersection_of: UBERON:0002385 ! muscle tissue
intersection_of: part_of UBERON:0002367 ! prostate gland
relationship: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0008716
name: hilum of kidney
synonym: "renal hilum" EXACT [FMA:15610]
xref: FMA:15610
xref: galen:HilumOfKidney
xref: ncithesaurus:Hilar_Area_of_the_Kidney
xref: SCTID:279370006
is_a: UBERON:0004885 ! hilum
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002113
intersection_of: UBERON:0004885 ! hilum
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0008772
name: proximal epiphysis of tibia
synonym: "head of tibia" EXACT [FMA:33113]
synonym: "proximal end of tibia" EXACT [FMA:33113]
synonym: "upper end of tibia" EXACT [FMA:33113]
xref: FMA:33113
xref: ncithesaurus:Head_of_the_Tibia
xref: SCTID:302526005
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004383 ! epiphysis of tibia
relationship: part_of UBERON:0000979
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0000979 ! tibia
relationship: part_of UBERON:0000979 ! tibia
[Term]
id: UBERON:0008775
name: proximal epiphysis of fibula
synonym: "head of fibula" EXACT [FMA:33729]
synonym: "proximal end of fibula" EXACT [FMA:33729]
synonym: "upper end of fibula" EXACT [FMA:33729]
xref: FMA:33729
xref: galen:HeadOfFibula
xref: ncithesaurus:Head_of_the_Fibula
xref: SCTID:182080006
is_a: UBERON:0004380 ! proximal epiphysis
is_a: UBERON:0004388 ! epiphysis of fibula
relationship: part_of UBERON:0001446
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0001446 ! fibula
relationship: part_of UBERON:0001446 ! fibula
[Term]
id: UBERON:0008776
name: inner cell mass derived hypoblast
def: "The hypoblast is a tissue type that forms from the inner cell mass. It lies beneath the epiblast and consists of small cuboidal cells. Extraembryonic endoderm is derived from hypoblast." [Wikipedia:Hypoblast]
subset: early_development
xref: EHDAA2:0000796
is_a: UBERON:0000089 ! hypoblast
relationship: adjacent_to UBERON:0002532 ! epiblast
relationship: develops_from UBERON:0000087 {source="Wikipedia"} ! inner cell mass
[Term]
id: UBERON:0008777
name: hypaxial musclulature
def: "trunk muscles that lie ventral to the horizontal septum of the vertebrae." [Wikipedia:Epaxial_and_Hypaxial_muscles]
synonym: "hypaxial muscle" RELATED [XAO:0003228]
xref: AAO:0000228
xref: XAO:0003228
property_value: UBPROP:0000001 "Trunk muscle that lies ventral to the horizontal septum of the vertebrae.[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004479 ! musculature of trunk
relationship: develops_from UBERON:0003895
intersection_of: UBERON:0001015 ! musculature
intersection_of: develops_from UBERON:0003895 ! hypaxial myotome region
relationship: develops_from UBERON:0003895 ! hypaxial myotome region
relationship: part_of UBERON:0001774 {source="XAO"} ! muscle of trunk
[Term]
id: UBERON:0008778
name: epaxial musclulature
def: "." [Wikipedia:Epaxial_and_Hypaxial_muscles]
synonym: "epaxial muscle" EXACT [XAO:0003229]
xref: AAO:0000142
xref: XAO:0003229
property_value: UBPROP:0000001 "Trunk muscles that lies dorsal to the horizontal septum.[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004479 ! musculature of trunk
relationship: develops_from UBERON:0003900
intersection_of: UBERON:0001015 ! musculature
intersection_of: develops_from UBERON:0003900 ! epaxial myotome region
relationship: develops_from UBERON:0003900 ! epaxial myotome region
relationship: part_of UBERON:0001774 {source="XAO"} ! muscle of trunk
[Term]
id: UBERON:0008779
name: subclavius
def: "The Subclavius is a small triangular muscle, placed between the clavicle and the first rib. Along with the pectoralis major and pectoralis minor muscles, the subclavius muscle makes up the anterior wall of the axilla." [Wikipedia:Subclavius_muscle]
synonym: "musculus subclavius" RELATED LATIN [Wikipedia:Subclavius_muscle]
synonym: "subclavicular muscle" RELATED [Wikipedia:Subclavius_muscle]
xref: FMA:13410
xref: http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray411subclavius.png
xref: ncithesaurus:Subclavius
is_a: UBERON:0001495 {source="FMA"} ! pectoral muscle
relationship: has_muscle_insertion UBERON:0001105 {source="dbpedia", notes="subclavian groove of clavicle"} ! clavicle
relationship: has_muscle_origin UBERON:0004601 {source="dbpedia"} ! rib 1
[Term]
id: UBERON:0008780
name: inner cell mass derived epiblast
subset: early_development
synonym: "embryonic epiblast" RELATED [MP:0003886]
xref: EHDAA2:0000444
xref: EHDAA:42
xref: EHDAA:75
xref: EMAPA:16050
xref: ncithesaurus:Epiblast
is_a: UBERON:0002532 ! epiblast
relationship: develops_from UBERON:0000087
intersection_of: UBERON:0002532 ! epiblast
intersection_of: develops_from UBERON:0000087 ! inner cell mass
relationship: develops_from UBERON:0000087 {source="Wikipedia"} ! inner cell mass
relationship: develops_from UBERON:0000087 ! inner cell mass
relationship: part_of UBERON:0000091 ! bilaminar disc
[Term]
id: UBERON:0008781
name: blastodisc derived epiblast
comment: part of blastodisc in BTO; indirect development in ZFA: df DEL df deep blastomere isa blastomere po blastodisc
subset: early_development
xref: TAO:0000018
xref: ZFA:0000018
property_value: "dubious_for_taxon" NCBITaxon:40674
property_value: UBPROP:0000001 "The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation. Kimmel et al, 1995.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass embryonic structure (VSAO:0000178) CHANGED TO: develops_from embryonic structure (UBERON:0002050)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass embryonic structure (VSAO:0000178) CHANGED TO: part_of embryonic structure (UBERON:0002050)[TAO]" xsd:string
is_a: UBERON:0002532 ! epiblast
relationship: develops_from UBERON:0004749
intersection_of: UBERON:0002532 ! epiblast
intersection_of: develops_from UBERON:0004749 ! blastodisc
relationship: develops_from UBERON:0004749 {source="Wikipedia"} ! blastodisc
relationship: develops_from UBERON:0004749 ! blastodisc
relationship: part_of UBERON:0002541 {source="ZFA"} ! germ ring
[Term]
id: UBERON:0008783
name: dorsal venous arch
def: "The dorsal venous arch of the foot is a superficial vein that connects the small saphenous vein and the great saphenous vein. Anatomically, it is defined by where the dorsal veins of the first and fifth digit, respectively, meet the great saphenous vein and small saphenous vein." [Wikipedia:Dorsal_venous_arch_of_the_foot]
synonym: "arcus venosus dorsalis pedis" EXACT [Wikipedia:Dorsal_venous_arch_of_the_foot]
synonym: "arcus venosus dorsalis pedis" RELATED LATIN [Wikipedia:Dorsal_venous_arch_of_the_foot]
synonym: "dorsal venous arch of foot" EXACT [FMA:44356]
xref: FMA:44356
xref: http://upload.wikimedia.org/wikipedia/commons/4/4e/Gray581.png
xref: MA:0002110
xref: SCTID:231189006
is_a: UBERON:0001638 {source="MA"} ! vein
[Term]
id: UBERON:0008784
name: lower limb segment
synonym: "free lower limb segment" EXACT [FMA:24877]
synonym: "free lower limb subdivision" EXACT [FMA:24877]
synonym: "segment of free lower limb" EXACT [FMA:24877]
synonym: "subdivision of free lower limb" EXACT [FMA:24877]
xref: FMA:24877
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002103
intersection_of: UBERON:0002529 ! limb segment
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0008785
name: upper limb segment
synonym: "free upper limb segment" EXACT [FMA:24876]
synonym: "free upper limb subdivision" EXACT [FMA:24876]
synonym: "segment of free upper limb" EXACT [FMA:24876]
synonym: "subdivision of free upper limb" EXACT [FMA:24876]
xref: FMA:24876
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002529 ! limb segment
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0008786
name: third trochanter
def: "The upper part of the gluteal tuberosity is often elongated into a roughened crest, on which a more or less well-marked, rounded tubercle, the third trochanter, is occasionally developed." [Wikipedia:Third_trochanter]
synonym: "trochanter tertius" RELATED LATIN [Wikipedia:Third_trochanter]
xref: FMA:75824
xref: http://upload.wikimedia.org/wikipedia/commons/2/2b/Third_trochanter-tweaked.png
is_a: UBERON:0000980 {source="Wikipedia"} ! trochanter
relationship: part_of UBERON:0004412 {source="FMA"} ! proximal epiphysis of femur
[Term]
id: UBERON:0008787
name: fourth trochanter
def: "a knob-like feature on the medial side of the femur that serves as a muscle attachment." [Wikipedia:Fourth_trochanter]
comment: The fourth trochanter first appeared in the Erythrosuchidae, large basal archosaurian predators of the early Triassic period. This seemingly insignificant detail may have made the evolution of dinosaurs possible (all early dinosaurs and many later ones were bipeds), and may also be connected with the ability of the archosaurs or their immediate ancestors to survive the catastrophic Permian-Triassic extinction event[WP].
is_a: UBERON:0000980 {source="Wikipedia"} ! trochanter
[Term]
id: UBERON:0008788
name: posterior cranial fossa
def: "The infratentorial compartment that contains the CEREBELLUM and BRAIN STEM. It is formed by the posterior third of the superior surface of the body of the sphenoid (SPHENOID BONE), by the occipital, the petrous, and mastoid portions of the TEMPORAL BONE, and the posterior inferior angle of the PARIETAL BONE." [MESH:A.01.456.830.200, Wikipedia:Posterior_cranial_fossa]
synonym: "fossa cranii posterior" RELATED LATIN [Wikipedia:Posterior_cranial_fossa]
synonym: "posterior fossa" BROAD [ncithesaurus:Posterior]
xref: FMA:54368
xref: GAID:85
xref: http://upload.wikimedia.org/wikipedia/commons/c/c2/Posterior_fossa.png
xref: MESH:A.01.456.830.200
xref: ncithesaurus:Posterior_Fossa
is_a: UBERON:0008789 ! cranial fossa
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0008789
name: cranial fossa
def: "any of the three large depressions in the posterior, middle, and anterior aspects of the floor of the cranial cavity" [http://mw1.merriam-webster.com/medical/cranial%20fossa]
comment: editor note - todo - review the relationships for this and its subclasses; the relation should be bounded rather than part of, and contains should be used for the brain parts contained by the fossae
is_a: UBERON:0004704 ! bone fossa
relationship: part_of UBERON:0003128
intersection_of: UBERON:0004704 ! bone fossa
intersection_of: part_of UBERON:0003128 ! cranium
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0008790
name: rugal fold
def: "a ridge or fold, such as the rugae of the stomach, which are large folds in the mucous membrane of that organ." [http://medical-dictionary.thefreedictionary.com/Rugal+folds, Wikipedia:Rugae]
synonym: "ruga" EXACT [Wikipedia:Rugae]
synonym: "rugae" RELATED PLURAL [Wikipedia:Rugae]
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000344 ! mucosa
[Term]
id: UBERON:0008791
name: rugal fold of stomach
synonym: "gastric ruga" EXACT [FMA:15106]
synonym: "gastric rugae" EXACT [FMA:15106]
synonym: "ruga of stomach" EXACT [FMA:15106]
xref: FMA:15106
xref: ncithesaurus:Gastric_Rugae
xref: SCTID:268518001
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0008790 ! rugal fold
relationship: part_of UBERON:0000945
intersection_of: UBERON:0008790 ! rugal fold
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0008798
name: rugal fold of vagina
synonym: "ruga of vagina" EXACT [FMA:19991]
synonym: "vaginal ruga" EXACT [FMA:19991]
xref: FMA:19991
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0008790 ! rugal fold
relationship: part_of UBERON:0000996
intersection_of: UBERON:0008790 ! rugal fold
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0008799
name: transverse palatine fold
def: "a masticatory vestige on the hard palate; one of several irregular, sometimes branching, crests of soft tissue that radiate from the region of the incisive papillae at their most anterior parts and extend a slight distance backward, crossing the hard palate and reaching laterally for variable distances." [http://www.drugs.com/dict/transverse-palatine-fold.html]
comment: note that this class refers to the singular and the FMA class refers to the set. In future this class may be split.
synonym: "palatine fold" EXACT [FMA:75652]
synonym: "palatine rugae" EXACT PLURAL [FMA:75652]
synonym: "plica palatina transversa" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html]
synonym: "plicae palatinae transversae" EXACT [FMA:75652, FMA:TA]
synonym: "ruga of palate" EXACT [UBERON:cjm]
synonym: "ruga palatina" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html]
synonym: "rugae of palate" EXACT PLURAL [UBERON:cjm]
synonym: "rugae palatinae" EXACT PLURAL [FMA:75652, FMA:TA]
synonym: "transverse palatine folds" EXACT PLURAL [FMA:75652]
synonym: "transverse palatine folds set" EXACT PLURAL [FMA:75652]
synonym: "transverse palatine ridge" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html]
xref: FMA:75652
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0008790 ! rugal fold
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0003216
intersection_of: UBERON:0008790 ! rugal fold
intersection_of: part_of UBERON:0003216 ! hard palate
relationship: part_of UBERON:0003216 ! hard palate
[Term]
id: UBERON:0008800
name: parietal endoderm
def: "primitive endoderm-derived tissue that lines the luminal surface of the mural trophectoderm[MP]" [MP:0011187, PMID:19201946]
synonym: "distal endoderm" RELATED [EMAPA:16053]
xref: EMAPA:16053
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0000417 {source="MP"} ! primitive endoderm
[Term]
id: UBERON:0008801
name: parotid gland primordium
xref: EHDAA2:0001413
xref: EHDAA:9246
is_a: UBERON:0001048 {source="Obol"} ! primordium
[Term]
id: UBERON:0008802
name: cheek pouch
def: "A pocketlike fold of skin in the cheeks of various animals, such as squirrels, gophers, and monkeys, that functions as a means of carrying food." [BTO:0002224]
xref: BTO:0002224
xref: SCTID:31293007
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0008803 ! skin of cheek
relationship: part_of UBERON:0000165 ! mouth
relationship: part_of UBERON:0001567 {source="BTO"} ! cheek
[Term]
id: UBERON:0008803
name: skin of cheek
synonym: "cheek skin" EXACT [FMA:24759]
xref: FMA:24759
xref: SCTID:181472009
is_a: UBERON:1000021 ! skin of face
relationship: part_of UBERON:0001567
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001567 ! cheek
relationship: part_of UBERON:0001567 ! cheek
[Term]
id: UBERON:0008804
name: stylopharyngeus muscle
def: "The stylopharyngeus is a muscle in the head that stretches between the styloid process and the pharynx." [Wikipedia:Stylopharyngeus_muscle]
synonym: "M. stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle]
synonym: "musculus stylopharyngeus" RELATED [Wikipedia:Stylopharyngeus_muscle]
synonym: "musculus stylopharyngeus" RELATED LATIN [Wikipedia:Stylopharyngeus_muscle]
synonym: "stylopharyngeus" EXACT [Wikipedia:Stylopharyngeus_muscle]
xref: FMA:46664
xref: http://upload.wikimedia.org/wikipedia/commons/5/59/Musculusstylopharyngeus.png
xref: ncithesaurus:Stylopharyngeus
xref: SCTID:244806000
property_value: UBPROP:0000001 "The stylopharyngeus is a pharyngeal arch III muscle that participates in oral/pharyngeal behaviors and is innervated by the n. to stylopharyngeus branch of the glossopharyngeal n. and attaches to the hyoid apparatus and the pharynx.[FEED]" xsd:string
is_a: UBERON:0000933 {source="FMA"} ! pharyngeal muscle
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3
relationship: has_muscle_insertion UBERON:0001738 {source="dbpedia", notes="thyroid cartilage"} ! thyroid cartilage
relationship: has_muscle_nerve UBERON:0001649 {source="dbpedia"} ! glossopharyngeal nerve
relationship: has_muscle_origin UBERON:0003960 {source="dbpedia"} ! styloid process of temporal bone
[Term]
id: UBERON:0008805
name: gingival groove
def: "The gingival sulcus is an area of potential space between a tooth and the surrounding gingival tissue and is lined by sulcular epithelium. The depth of the sulcus (Latin for groove) is bounded by two entities: apically by the gingival fibers of the connective tissue attachment and coronally by the free gingival margin." [Wikipedia:Gingival_sulcus]
synonym: "gingival sulcus" EXACT [FMA:74580]
synonym: "sulcus gingivalis" EXACT [FMA:TA]
synonym: "sulcus gingivalis" RELATED LATIN [Wikipedia:Gingival_sulcus]
xref: FMA:74580
xref: http://upload.wikimedia.org/wikipedia/commons/5/5e/Gingival_sulcus.PNG
xref: SCTID:245753001
is_a: UBERON:0006800 ! anatomical line
relationship: adjacent_to UBERON:0001091
relationship: adjacent_to UBERON:0001828
intersection_of: UBERON:0006800 ! anatomical line
intersection_of: adjacent_to UBERON:0001091 ! calcareous tooth
intersection_of: adjacent_to UBERON:0001828 ! gingiva
relationship: adjacent_to UBERON:0001091 ! calcareous tooth
relationship: adjacent_to UBERON:0001828 ! gingiva
[Term]
id: UBERON:0008806
name: buccal funnel
synonym: "suctorial disc" EXACT []
synonym: "suctorial disk" EXACT []
is_a: UBERON:0000166 ! oral opening
[Term]
id: UBERON:0008807
name: coagulating gland
synonym: "anterior prostate gland" EXACT [EMAPA:29794]
synonym: "prostate gland anterior lobe" RELATED [MA:0000402]
xref: BTO:0000265
xref: EMAPA:29794
xref: MA:0000402
xref: ncithesaurus:Coagulating_Gland
xref: SCTID:78779004
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0010147 ! male accessory sex gland
relationship: part_of UBERON:0002367 {source="EMAPA", not_supported_by="MA"} ! prostate gland
[Term]
id: UBERON:0008808
name: prostate gland dorsolateral lobe
xref: MA:0001739
is_a: UBERON:0001328 {source="MA"} ! lobe of prostate
[Term]
id: UBERON:0008809
name: foramina of scarpa
def: "In the maxilla, occasionally two additional canals are present in the middle line of the palatine process; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal." [Wikipedia:Foramina_of_Scarpa]
synonym: "foramina of scarpa" RELATED [Wikipedia:Foramina_of_Scarpa]
xref: http://upload.wikimedia.org/wikipedia/commons/4/4a/Gray160.png
xref: Wikipedia:Foramina_of_Scarpa
is_a: UBERON:0011773 ! upper jaw opening
relationship: part_of UBERON:0005871 ! palatine process of maxilla
relationship: surrounds UBERON:0008810 ! nasopalatine nerve
[Term]
id: UBERON:0008810
name: nasopalatine nerve
def: "One branch of the posterior superior nasal branches (trigeminal, maxillary branch), longer and larger than the others, is named the nasopalatine nerve (sometimes called the long sphenopalatine nerve). It enters the nasal cavity through the sphenopalatine foramen, passes across the roof of the nasal cavity below the orifice of the sphenoidal sinus to reach the septum, and then runs obliquely downward and forward between the periosteum and mucous membrane of the lower part of the septum. It descends to the roof of the mouth through the incisive canal and communicates with the corresponding nerve of the opposite side and with the greater palatine nerve. It supplies the palatal structures around the upper central and lateral incisors and the canines (the upper front six teeth). It also furnishes a few filaments to the mucous membrane of the nasal septum. The medial superior posterior nasal branches of maxillary nerve usually branches from the nasopalatine nerve." [Wikipedia:Nasopalatine_nerve]
synonym: "naso-palatine nerve" RELATED [Wikipedia:Nasopalatine_nerve]
synonym: "nasopalatine" RELATED [Wikipedia:Nasopalatine_nerve]
synonym: "nasopalatine nerves" RELATED [Wikipedia:Nasopalatine_nerve]
synonym: "nervus nasopalatinus" RELATED LATIN [Wikipedia:Nasopalatine_nerve]
synonym: "Scarpa's nerve" EXACT [FMA:52797]
xref: FMA:52797
xref: http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray858.png
is_a: UBERON:0001021 ! nerve
relationship: branch_of UBERON:0000377 {source="FMA"} ! maxillary nerve
[Term]
id: UBERON:0008811
name: intromittent organ
def: "an external organ of a male organism that is specialized to deliver sperm during copulation. Intromittent organs are found most often in terrestrial species, as most aquatic species fertilize their eggs externally, although there are exceptions[WP]." [Wikipedia:Intromittent_organ]
comment: this is a broad grouping class connecting a number of different analagous organs by their function. We place the insect aedeagus here rather than penis, although this is somewhat arbitrary given the broadness of the current definition
subset: grouping_class
subset: organ_slim
synonym: "aedeagus" NARROW SENSU [FBbt:00004850]
xref: AAO:0010255
xref: FBbt:00004850
xref: HAO:0000091
xref: TAO:0002036
xref: TGMA:0000585
property_value: UBPROP:0000001 "Surface structure that is an external structure of a male organism through which sperm is transferred to a female organism during mating.[TAO]" xsd:string
is_a: UBERON:0003135 ! male reproductive organ
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0008812
name: hemipenis
def: "one of a pair of intromittent organs of male squamates. Hemipenes are usually held inverted, within the body, and are everted for reproduction via erectile tissue like that in the human penis. Only one is used at a time, and some evidence indicates males alternate use between copulations. The hemipenis itself has a variety of shapes, depending on species. Often the hemipenis bears spines or hooks, in order to anchor the male within the female. Some species even have forked hemipenes (each hemipenis has two tips). Due to being everted and inverted, hemipenes do not have a completely enclosed channel for the conduction of sperm, but rather a seminal groove which seals as the erectile tissue expands" [Wikipedia:Hemipenis]
subset: organ_slim
synonym: "hemipenes" RELATED PLURAL [Wikipedia:Hemipenis]
is_a: UBERON:0008811 {source="Wikipedia"} ! intromittent organ
[Term]
id: UBERON:0008813
name: helicotrema
def: "The part of the cochlear labyrinth where the scala tympani and the scala vestibuli meet. It is the main component of the cochlear apex. The hair cells in this area best detect low frequency sounds." [Wikipedia:Helicotrema]
synonym: "apex of cochlea" BROAD [Wikipedia:Cochlea]
synonym: "cochlear apex" BROAD [Wikipedia:Cochlea]
synonym: "Scarpa's orifice" EXACT [FMA:61275]
xref: FMA:61275
xref: http://upload.wikimedia.org/wikipedia/commons/1/19/Gray923.png
xref: ncithesaurus:Helicotrema
xref: SCTID:279775003
is_a: UBERON:0000161 {source="FMA"} ! orifice
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005744 ! cranial conduit
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002499 {source="Wikipedia"} ! cochlear labyrinth
[Term]
id: UBERON:0008814
name: pharyngeal system
def: "A transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear." [GO:0060037, GOC:dph]
synonym: "pharyngeal apparatus" EXACT []
synonym: "pharyngeal arch region" EXACT [EHDAA2:0000187]
synonym: "pharyngeal arches and clefts" RELATED []
xref: EHDAA2:0000187
xref: ncithesaurus:Pharyngeal_Apparatus
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0008815
name: pharyngeal slit
def: "filter-feeding organs found in non-vertebrate chordates (lancelets and tunicates) and hemichordates living in aquatic environments. These repeated segments are controlled by similar developmental mechanisms." [Wikipedia:Pharyngeal_slit]
comment: Editor/Taxon notes: requires review. Kardong uses the term pharyngeal slit for Chondrichthyans
subset: organ_slim
property_value: RO:0002161 NCBITaxon:7742
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0008816
name: embryonic head
xref: FBbt:00000155
is_a: UBERON:0000033 ! head
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000922
intersection_of: UBERON:0000033 ! head
intersection_of: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0008817
name: thymus primordium endoderm
is_a: UBERON:0000925 ! endoderm
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0005562
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0005562 ! thymus primordium
relationship: has_developmental_contribution_from UBERON:0007124 {source="PMID:16313389"} ! pharyngeal pouch 3
relationship: part_of UBERON:0005562 ! thymus primordium
[Term]
id: UBERON:0008818
name: superior mediastinum
def: "The superior mediastinum is that portion of the interpleural space which lies between the manubrium sterni in front, and the upper thoracic vertebrae behind." [Wikipedia:Superior_mediastinum]
synonym: "mediastinum superius" RELATED LATIN [Wikipedia:Superior_mediastinum]
synonym: "superior mediastinal part of chest" EXACT [FMA:9827]
xref: FMA:9827
xref: http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png
xref: ncithesaurus:Superior_Mediastinum
xref: SCTID:362687003
is_a: UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0003728 {source="FMA"} ! mediastinum
[Term]
id: UBERON:0008819
name: inferior mediastinum
def: "Anterior, middle and posterior mediastinum." [Wikipedia:Inferior_mediastinum]
synonym: "inferior mediastinal part of chest" EXACT [FMA:9828]
xref: FMA:9828
xref: SCTID:243950006
is_a: UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0001443 {source="FMA-propagated"} ! chest
relationship: part_of UBERON:0003728 {source="FMA"} ! mediastinum
[Term]
id: UBERON:0008820
name: anterior mediastinum
def: "The anterior mediastinum exists only on the left side where the left pleura diverges from the mid-sternal line. It is narrow, above, but widens out a little below." [Wikipedia:Anterior_mediastinum]
synonym: "anterior mediastinal part of chest" EXACT [FMA:9838]
synonym: "mediastinum anterius" RELATED LATIN [Wikipedia:Anterior_mediastinum]
xref: FMA:9838
xref: http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png
xref: ncithesaurus:Anterior_Mediastinum
xref: SCTID:261048003
is_a: UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0008819 {source="FMA"} ! inferior mediastinum
[Term]
id: UBERON:0008821
name: middle mediastinum
def: "The middle mediastinum is the broadest part of the interpleural space. It is made up of the pericardial sac and its contents." [Wikipedia:Middle_mediastinum]
synonym: "mediastinum medium" RELATED LATIN [Wikipedia:Middle_mediastinum]
synonym: "middle mediastinal part of chest" EXACT [FMA:9839]
xref: FMA:9839
xref: http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png
xref: ncithesaurus:Middle_Mediastinum
xref: SCTID:362688008
is_a: UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0008819 {source="FMA"} ! inferior mediastinum
[Term]
id: UBERON:0008822
name: posterior mediastinum
def: "The posterior mediastinum is an irregular triangular space running parallel with the vertebral column." [Wikipedia:Posterior_mediastinum]
synonym: "mediastinum posterius" RELATED LATIN [Wikipedia:Posterior_mediastinum]
synonym: "posterior mediastinal part of chest" EXACT [FMA:9840]
xref: FMA:9840
xref: http://upload.wikimedia.org/wikipedia/commons/a/ab/Mediastinum.png
xref: ncithesaurus:Posterior_Mediastinum
xref: SCTID:243957009
is_a: UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0008819 {source="FMA"} ! inferior mediastinum
[Term]
id: UBERON:0008823
name: neural tube derived brain
comment: note that a reasoner should automatically classify all the vertebrate ontology brain classes here
synonym: "vertebrate brain" NARROW []
is_a: UBERON:0000489 {source="ZFA"} ! cavitated compound organ
is_a: UBERON:0000955 ! brain
relationship: develops_from UBERON:0001049
intersection_of: UBERON:0000955 ! brain
intersection_of: develops_from UBERON:0001049 ! neural tube
relationship: develops_from UBERON:0001049 ! neural tube
relationship: part_of UBERON:0000033 {source="FMA"} ! head
[Term]
id: UBERON:0008824
name: duct of epididymis
synonym: "epididymal duct" EXACT [MA:0001735]
synonym: "epididymis duct" EXACT [FMA:18297]
xref: FMA:18297
xref: MA:0001735
xref: ncithesaurus:Duct_of_the_Epididymis
xref: SCTID:279623004
is_a: UBERON:0005904 ! duct of male reproductive system
relationship: part_of UBERON:0001301
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001301 ! epididymis
relationship: part_of UBERON:0001301 {source="FMA"} ! epididymis
relationship: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0008826
name: pulmonary surfactant
def: "Secretion produced by Type 2 pulmonary alveolar cell." [FMA:62780]
synonym: "alveolar surfactant" EXACT [FMA:62780]
synonym: "lung surfactant" EXACT [MA:0002534]
xref: FMA:62780
xref: MA:0002534
xref: ncithesaurus:Lung_Surfactant
is_a: UBERON:0006538 {source="MA"} ! respiratory system fluid/secretion
[Term]
id: UBERON:0008827
name: forestomach
xref: MA:0001606
xref: ncithesaurus:Forestomach
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0000945 {source="MA"} ! stomach
[Term]
id: UBERON:0008828
name: presphenoid bone
def: "The anterior part of the body of the sphenoid bone in front of the basisphenoid. It is usually a separate bone in the young or fetus, but becomes a part of the sphenoid in the adult." [http://www.thefreedictionary.com/Presphenoid+bone, Wikipedia:Ossification_of_sphenoid#Presphenoid]
comment: todo - account for developmental change
synonym: "presphenoidal bone" EXACT [SCTID:95949009]
xref: MA:0001470
xref: SCTID:95949009
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0011164 {source="MA"} ! neurocranium bone
relationship: part_of UBERON:0001677 {source="MA"} ! sphenoid bone
relationship: part_of UBERON:0003111 {source="Kardong"} ! sphenoid region
[Term]
id: UBERON:0008829
name: cerebellum external granule cell layer
def: "transient layer of the cerebellar cortex present during development which is composed of dividing and migrating granule cells[MP]. The granule neurons migrate from the exterior layer to form an inner layer known as the internal granule layer. The external granular layer ceases to exist in the mature cerebellum, leaving only granule cells in the internal granule layer" [MP:0000874, Wikipedia:Anatomy_of_the_cerebellum#Development]
xref: MA:0000994
xref: NIF_GrossAnatomy:birnlex_797
is_a: UBERON:0002956 {source="MA"} ! granular layer of cerebellar cortex
[Term]
id: UBERON:0008830
name: cerebellum internal granule cell layer
xref: MA:0000995
xref: ncithesaurus:Internal_Granular_Layer_of_the_Cerebellum
xref: NIF_GrossAnatomy:birnlex_790
is_a: UBERON:0002956 {source="MA"} ! granular layer of cerebellar cortex
[Term]
id: UBERON:0008831
name: inner spiral sulcus
def: "a concavity in the floor of the cochlear duct formed by the overhanging vestibular lip." [http://www.drugs.com/dict/inner-spiral-sulcus.html]
comment: part_of spiral sulcus in MA
synonym: "internal spiral sulcus" EXACT [MA:0001197]
synonym: "sulcus spiralis internus" EXACT [http://www.drugs.com/dict/inner-spiral-sulcus.html]
xref: FMA:77850
xref: MA:0001197
is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus
[Term]
id: UBERON:0008832
name: outer spiral sulcus
def: "a concavity in the outer wall of the cochlear duct between the spiral prominence and the spiral organ." [http://www.drugs.com/dict/outer-spiral-sulcus.html]
comment: part_of spiral sulcus in MA
synonym: "external spiral sulcus" EXACT [MA:0001196]
synonym: "sulcus spiralis externus" EXACT [http://www.drugs.com/dict/outer-spiral-sulcus.html]
xref: FMA:77851
xref: MA:0001196
is_a: UBERON:0002277 {source="FMA"} ! spiral sulcus
[Term]
id: UBERON:0008833
name: great auricular nerve
def: "The great auricular nerve originates from the cervical plexus, composed of branches of spinal nerves C2 and C3. It provides sensory innervation for the skin over parotid gland and mastoid process, and both surfaces of the outer ear." [Wikipedia:Great_auricular_nerve]
comment: todo - check MA grouping; in MA this is part_of pinna - should this be a different relationship?
synonym: "auricular nerve" EXACT [MA:0001232]
synonym: "great auricular" RELATED [Wikipedia:Great_auricular_nerve]
synonym: "greater auricular nerve" RELATED [Wikipedia:Great_auricular_nerve]
synonym: "nervus auricularis magnus" RELATED LATIN [Wikipedia:Great_auricular_nerve]
xref: FMA:6872
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray805.png
xref: MA:0001232
xref: SCTID:181110003
xref: Wikipedia:Great_auricular_nerve
is_a: UBERON:0002003 {source="FMA"} ! peripheral nerve
relationship: branch_of UBERON:0003725 {source="FMA"} ! cervical plexus
[Term]
id: UBERON:0008834
name: prostomium
def: "The first body segment in annelids worms. It is in front of (but does not include) the mouth, being usually a small shelf- or lip-like extension over the dorsal side of the mouth. It sometimes bears antennae and eyes. By feeding, it often functions like a kind of overlip. The shape and composition of prostomium are important for annelid systematics." [Wikipedia:Prostomium]
synonym: "acron" RELATED [BTO:0004198]
xref: BTO:0004198
is_a: UBERON:0000914 ! organismal segment
[Term]
id: UBERON:0008835
name: hepatic diverticulum
def: "The first morphological sign of the embryonic liver is the formation of the hepatic diverticulum, an out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile duct." [http://www.stembook.org/node/512, Wikipedia:Hepatic_diverticulum]
synonym: "diverticulum hepaticum" RELATED LATIN [Wikipedia:Hepatic_diverticulum]
synonym: "liver diverticulum" EXACT [XAO:0000101]
xref: AAO:0011057
xref: EHDAA2:0000740
xref: EHDAA:1530
xref: http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png
xref: ncithesaurus:Hepatic_Diverticulum
xref: XAO:0000101
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac
is_a: UBERON:0009497 ! epithelium of foregut-midgut junction
is_a: UBERON:0009854 ! digestive tract diverticulum
relationship: develops_from UBERON:0003894 {source="EHDAA2"} ! liver primordium
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0006235 {source="EHDAA2"} ! foregut-midgut junction
[Term]
id: UBERON:0008836
name: liver bud
xref: BTO:0001642
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0008835 {source="http://www.stembook.org/node/512"} ! hepatic diverticulum
[Term]
id: UBERON:0008837
name: palmar/plantar part of autopod
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002470 ! autopod region
[Term]
id: UBERON:0008838
name: autopod pad
synonym: "digital pad" RELATED [EMAPA:18489]
synonym: "digital pads" RELATED PLURAL [EMAPA:18489]
is_a: UBERON:0001419 ! skin of limb
relationship: part_of UBERON:0002470 ! autopod region
[Term]
id: UBERON:0008839
name: palmar pad
comment: note that the EMAPA term refers to the plural
synonym: "palmar pads" RELATED PLURAL [EMAPA:18489]
xref: EMAPA:18489
is_a: UBERON:0001519 ! skin of hand
relationship: part_of UBERON:0001519 {source="EMAPA"} ! skin of hand
relationship: part_of UBERON:0008878 {source="cjm"} ! palmar part of hand
[Term]
id: UBERON:0008840
name: plantar pad
synonym: "plantar pads" RELATED PLURAL [EMAPA:18507]
xref: EMAPA:18507
is_a: UBERON:0001513 ! skin of foot
relationship: part_of UBERON:0001513 {source="EMAPA"} ! skin of foot
relationship: part_of UBERON:0008338 {source="cjm"} ! plantar part of foot
[Term]
id: UBERON:0008841
name: suspensory ligament
def: "A ligament that supports a body part, especially an organ." [Wikipedia:Cooper%27s_ligaments_of_penis]
is_a: UBERON:0008845 ! nonskeletal ligament
[Term]
id: UBERON:0008842
name: suspensory ligament of testis
def: "The cranial atrophic portion of the urogenital ridge attached to the cranial pole of the intraabdominal embryonic testis" [http://www.medilexicon.com/medicaldictionary.php?t=49790, Wikipedia:Scrotal_ligament]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament
relationship: attaches_to UBERON:0000473
intersection_of: UBERON:0008841 ! suspensory ligament
intersection_of: attaches_to UBERON:0000473 ! testis
relationship: attaches_to UBERON:0000473 ! testis
relationship: part_of UBERON:0004876 {source="Obol"} ! urogenital ridge
[Term]
id: UBERON:0008843
name: gubernaculum testis
def: "The fetal ligament attached to the inferior end of the epididymis and testis and, at its other end, to the bottom of the scrotum; it is present during, and is thought to guide, the descent of the testis into the scrotum and then atrophies." [BTO:0002813]
comment: The upper part of the gubernaculum degenerates; The lower part persists as the gubernaculum testis ("scrotal ligament"). This ligament secures the testis to the most inferior portion of the scrotum, tethering it in place and limiting the degree to which the testis can move within the scrotum[WP]
synonym: "Hunter's gubernaculum" RELATED [BTO:0002813]
xref: BTO:0002813
xref: EMAPA:19089
xref: FMA:20421
xref: SCTID:299983007
is_a: UBERON:0004346 ! gubernaculum
relationship: part_of UBERON:0000079
intersection_of: UBERON:0004346 ! gubernaculum
intersection_of: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0008844
name: gubernaculum (female)
comment: The upper part of the gubernaculum, together with the ovarian artery and vein form the suspensory ligament of the ovary,[1] which suspends the ovary from the pelvic wall.; The lower gubernaculum has two vestigial remnants in females, the ovarian ligament and the round ligament of the uterus (ligamentum teres uteri) which respectively serve to support the ovaries and uterus in the pelvis
is_a: UBERON:0004346 ! gubernaculum
relationship: part_of UBERON:0000474
intersection_of: UBERON:0004346 ! gubernaculum
intersection_of: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0008845
name: nonskeletal ligament
def: "Ligament organ that primarily consists of dense connective tissue aggregated into fasciculi which may be admixed with smooth muscle. Examples: ligament of liver, ovarian ligament." [FMA:25625]
xref: FMA:25625
xref: MA:0003004
xref: SCTID:410746001
is_a: UBERON:0000211 {source="FMA"} ! ligament
disjoint_from: UBERON:0008846 ! skeletal ligament
[Term]
id: UBERON:0008846
name: skeletal ligament
def: "Ligament organ that primarily consists of regular dense connective tissue aggregated into fasciculi; connects bone and cartilage organs. Examples: sutural ligament, ligament of pinna, tarsal ligament." [FMA:25624, Wikipedia:Ligament#Articular_ligaments]
comment: Editor notes: logical definition deliberately made strict to avoid classifying MA:spiral ligament as both nonskeletal and skeletal. see https://sourceforge.net/tracker/?group_id=76834&atid=1205376
synonym: "articular larua" EXACT [Wikipedia:Ligament]
synonym: "articular ligament" EXACT [Wikipedia:Ligament]
synonym: "fibrous ligament" RELATED [Wikipedia:Ligament]
synonym: "ligament" BROAD [VSAO:0000072, ZFA:0001675]
synonym: "true ligament" EXACT [Wikipedia:Ligament]
xref: AAO:0010444
xref: AEO:0000090
xref: EHDAA2:0003232
xref: EV:0100144
xref: FMA:25624
xref: GAID:118
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Knee_diagram.svg/200px-Knee_diagram.svg.png
xref: MA:0003005
xref: MESH:A.02.513
xref: SCTID:410744003
xref: VSAO:0000072
property_value: UBPROP:0000001 "Dense regular connective tissue connecting two or more adjacent skeletal elements or supporting an organ.[VSAO]" xsd:string
is_a: UBERON:0000211 {source="FMA"} ! ligament
relationship: connects UBERON:0004765
relationship: part_of UBERON:0001434
intersection_of: UBERON:0000211 ! ligament
intersection_of: connects UBERON:0004765 ! skeletal element
intersection_of: part_of UBERON:0001434 ! skeletal system
relationship: connects UBERON:0004765 ! skeletal element
relationship: connects UBERON:0004765 {notes="bones or cartilage organs"} ! skeletal element
relationship: part_of UBERON:0001434 ! skeletal system
[Term]
id: UBERON:0008847
name: ovarian ligament
def: "a fibrous ligament that connects the ovary to the lateral surface of the uterus." [Wikipedia:Ovarian_ligament]
comment: The ligament runs in the broad ligament of the uterus, which is a fold of peritoneum rather than a fibrous ligament. Specifically, it is located in the parametrium
synonym: "ligament of ovary" EXACT [FMA:55422]
synonym: "ligamentum ovarii proprium" EXACT [FMA:TA]
synonym: "proper ovarian ligament" EXACT [FMA:55422]
xref: FMA:55422
xref: SCTID:279915004
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament
relationship: attaches_to UBERON:0000992 ! female gonad
relationship: attaches_to UBERON:0000995 ! uterus
relationship: develops_from UBERON:0004346 {source="Wikipedia"} ! gubernaculum
[Term]
id: UBERON:0008848
name: cranial suspensory ligament
def: "Connects the cranial tip of the future gonad to the dorsocranial abdominal cavity." []
comment: todo - check - add cranial ovarian susp ligaments
xref: EMAPA:30068
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament
relationship: part_of UBERON:0003135 {source="EMAPA"} ! male reproductive organ
[Term]
id: UBERON:0008851
name: ectoplacental cavity
def: "closed space within the ectoplacental cone, formed by the fusion of the parts of the amniotic fold that separate it from the amniotic cavity[MP]. a developmental cavity that exists in some mammals and is derived by division of the proamniotic space; it is further removed from the embryo than the amniotic cavity in some mammals" [http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity, MP:0011207]
synonym: "epamniotic cavity" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity]
xref: EMAPA:16080
is_a: UBERON:0002553 {source="EMAPA"} ! anatomical cavity
relationship: surrounded_by UBERON:0004364 ! ectoplacental cone
[Term]
id: UBERON:0008852
name: visceral yolk sac
def: "extraembryonic tissue membrane, formed from the visceral endoderm and the extraembryonic mesoderm, which is located ventral to the embryonic disc and is connected to the presumptive midgut of the embryo; the yolk that it contains is the site of embryonic hematopoiesis and vitelline circulation is involved in early embryonic circulation; it is the origin of the primordial germ cells" [MP:0001718]
comment: TODO - check
synonym: "secondary yolk sac" EXACT [MP:0001718]
synonym: "umbilical vesicle" EXACT [MP:0001718]
synonym: "vitelline sac" EXACT [MP:0001718]
synonym: "yolk sac" BROAD [MP:0001718]
is_a: UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0008853
name: parietal yolk sac
def: "tissue that consists of two cellular layers (parietal endoderm and trophoblast) separated by a relatively thick nonvascular basement membrane (Reichert's membrane), and acts as a protective layer to supports and facilitates transport of nutrients between the uterine tissue and the yolk sac cavity." [MP:0011203, PMID:1150659, PMID:21123814]
synonym: "primary yolk sac" EXACT [MP:0011203]
xref: EHDAA2:0003237
is_a: UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0008854
name: root of molar tooth
def: "the part of a molar tooth that is implanted in the gum; mandibular and maxillary molars usually have two and three roots, respectively." [MP:0011165]
synonym: "molar root" EXACT [FMA:85302]
synonym: "molar tooth root" EXACT [FMA:85302]
xref: FMA:85302
is_a: UBERON:0003677 {source="FMA"} ! tooth root
relationship: part_of UBERON:0003655
intersection_of: UBERON:0003677 ! tooth root
intersection_of: part_of UBERON:0003655 ! molar tooth
relationship: part_of UBERON:0003655 ! molar tooth
[Term]
id: UBERON:0008855
name: placenta metrial gland
def: "group of granular epithelial cells in the uterine muscle beneath the placenta that develops during pregnancy in rodents and some other species." [MP:0010777]
subset: organ_slim
xref: MA:0001723
property_value: RO:0002161 NCBITaxon:9443
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005398 ! female reproductive gland
relationship: part_of UBERON:0002450 {source="MP"} ! decidua
[Term]
id: UBERON:0008856
name: stomach muscularis externa
def: "the smooth muscle layer of the stomach wall that functions to churn and mix food and gastric secretions as well as to move food along the digestive tract to the intestines" [MP:0010779]
comment: todo - logical def
synonym: "gastric muscularis" EXACT [FMA:14909]
synonym: "muscularis externa of stomach" EXACT [FMA:14909]
synonym: "tunica muscularis (gaster)" EXACT [FMA:14909]
xref: FMA:14909
xref: SCTID:362132003
is_a: UBERON:0004222 ! stomach smooth muscle
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0001167
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0001167 ! wall of stomach
relationship: part_of UBERON:0001167 ! wall of stomach
relationship: part_of UBERON:0001167 {source="FMA"} ! wall of stomach
[Term]
id: UBERON:0008857
name: stomach smooth muscle circular layer
def: "the middle layer of the muscularis; it is continuous with the circular layer of the esophagus, but is absent in the fundus and lies concentric to the longitudinal axis of the stomach; the circular layer is normally tonically constricted forming a functional pyloric sphincter, which controls the movement of chyme into the duodenum" [MP:0010780]
comment: todo - check
synonym: "circular layer of gastric muscularis" EXACT [FMA:14911]
synonym: "stratum circulare (tunica muscularis)(gaster)" EXACT [FMA:14911]
xref: FMA:14911
xref: MA:0001628
xref: SCTID:2746007
is_a: UBERON:0004222 ! stomach smooth muscle
relationship: part_of UBERON:0008856 ! stomach muscularis externa
[Term]
id: UBERON:0008858
name: pyloric canal
def: "the short narrow part of the stomach extending from the pyloric antrum to the pyloric sphincter" [MP:0010791, Wikipedia:Pyloric_canal]
synonym: "canalis pyloricus" EXACT [Wikipedia:Pyloric_canal]
synonym: "canalis pyloricus" RELATED LATIN [Wikipedia:Pyloric_canal]
xref: FMA:14580
xref: http://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg
xref: SCTID:245417002
is_a: UBERON:0009870 {source="FMA"} ! zone of stomach
relationship: continuous_with UBERON:0001165 ! pyloric antrum
relationship: continuous_with UBERON:0001202 ! pyloric sphincter
relationship: part_of UBERON:0001166 {source="Wikipedia"} ! pylorus
[Term]
id: UBERON:0008859
name: cardiac gastric gland
def: "the gastric glands in the cardiac region of the stomach; cardiac glands are fewer in number than in the fundus and body, and secrete mucin which coats the stomach and protects it" [MP:0010795]
comment: Consistency note: Kardong places this in the glandular epithelium, FMA in the mucosa
subset: organ_slim
synonym: "gardiac gland" EXACT [ISBN10:0073040584]
synonym: "gastric gland of cardia" EXACT [FMA:14920]
synonym: "glandula cardiaca (gaster)" EXACT [FMA:14920]
xref: FMA:14920
xref: SCTID:8894005
is_a: UBERON:0000325 ! gastric gland
relationship: part_of UBERON:0001162
intersection_of: UBERON:0000325 ! gastric gland
intersection_of: part_of UBERON:0001162 ! cardia of stomach
relationship: part_of UBERON:0001162 ! cardia of stomach
relationship: part_of UBERON:0004996 {source="FMA"} ! mucosa of cardia of stomach
[Term]
id: UBERON:0008860
name: intermediate gastric gland
def: "any of the branched tubular glands in the mucosa of the fundus and body of the stomach that secrete most of the digestive substances secreted by the stomach" [MP:0010796]
comment: check me
is_a: UBERON:0010038 ! fundic gastric gland
relationship: part_of UBERON:0001160 {source="MP"} ! fundus of stomach
[Term]
id: UBERON:0008861
name: pyloric gastric gland
def: "the gastric glands in the pyloric region of the stomach; the pyloric glands secrete mucin, which coats the stomach and protects it, and hormones such as gastrin and enkephalin[MP]." [MP:0010797, Wikipedia:Pyloric_gland]
comment: Editors note: check relationship to pylorus vs antrum
synonym: "pyloric antrum gland" EXACT [OBOL:automatic]
synonym: "pyloric gland" EXACT [FMA:14922]
xref: FMA:14922
xref: http://upload.wikimedia.org/wikipedia/commons/b/bf/Gray1054.png
xref: ncithesaurus:Pyloric_Gland
xref: SCTID:70710007
is_a: UBERON:0000325 ! gastric gland
relationship: part_of UBERON:0001166
intersection_of: UBERON:0000325 ! gastric gland
intersection_of: part_of UBERON:0001166 ! pylorus
relationship: part_of UBERON:0001166 ! pylorus
relationship: part_of UBERON:0004998 ! mucosa of pylorus
[Term]
id: UBERON:0008862
name: stomach smooth muscle inner oblique layer
def: "the innermost layer of the muscularis; it is not present in all sections of the stomach but is clearly seen in the fundus and near the lesser curvature of the corpus; the oblique fibers disappear distally (towards the pyloric antrum); the oblique layer is responsible for creating the motion that churns and physically breaks down the food" [MP:0010804]
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0008856 ! stomach muscularis externa
[Term]
id: UBERON:0008863
name: stomach smooth muscle outer longitudinal layer
def: "the most superficial layer of the muscularis; it has two sections, a longitudinal layer that is common with the esophagus and ends in the corpus, and a longitudinal layer that originates in the corpus and spreads into the duodenum" [MP:0010805]
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0008856 ! stomach muscularis externa
[Term]
id: UBERON:0008866
name: enamel knot
def: "a transient cluster of cells in the central part of the dental epithelium facing the dental mesenchyme, which acts as an organizing center, providing positional information for tooth morphogenesis and regulating the growth of tooth cusps" [MP:0010864]
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0003843 ! dental epithelium
relationship: part_of UBERON:0005176 {source="MP"} ! tooth enamel organ
[Term]
id: UBERON:0008867
name: trabecular network of bone
def: "the network of intersecting plates and spicules in cancellous bone which form a meshwork of intercommunicating spaces filled with blood vessels and marrow; in mature bone, the trabeculae are aligned in parallel with the lines of major compressive or tensile force" [MP:0010867]
comment: Editor note: consider revision - we have 3 classes, the tissue itself, the network, and the spaces.
synonym: "bone trabecula" RELATED [MP:0010867]
synonym: "bone trabeculae" RELATED [MP:0010867]
xref: MP:0010867
xref: ncithesaurus:Bone_Trabeculae
is_a: UBERON:0000479 ! tissue
relationship: part_of UBERON:0002483 {source="MP"} ! trabecular bone tissue
[Term]
id: UBERON:0008870
name: pulmonary alveolar parenchyma
def: "the distinguishing cell types of the lung alveolar tissue, including pulmonary epithelial cells (pneumocytes), alveolar capillary endothelial cells, interstitial cells (fibroblasts) and alveolar macrophages" [MP:0010901]
is_a: UBERON:0008946 ! lung parenchyma
relationship: part_of UBERON:0002299
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0002299 ! alveolus of lung
relationship: part_of UBERON:0002299 ! alveolus of lung
[Term]
id: UBERON:0008872
name: pulmonary alveolus wall
def: "." [MP:0010903]
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002299 ! alveolus of lung
[Term]
id: UBERON:0008873
name: alveolar pore
def: "the openings in the alveolar septum that permit air flow between adjacent alveoli" [MP:0010904]
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002299 ! alveolus of lung
[Term]
id: UBERON:0008874
name: pulmonary acinus
def: "the part of the airway consisting of a respiratory bronchiole and all of its branches" [MP:0010911, Wikipedia:Acinus#The_Lungs]
synonym: "primary pulmonary lobule" EXACT [FMA:7313]
xref: FMA:7313
xref: ncithesaurus:Pulmonary_Acinus
xref: SCTID:361365004
is_a: UBERON:0010368 {source="FMA"} ! pulmonary lobule
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0008875
name: hypodermis fat layer
def: "the superficial portion of the subcutaneous tissue which is specialized for fat storage" [MP:0011156]
is_a: UBERON:0002190 {source="MP"} ! subcutaneous adipose tissue
relationship: part_of UBERON:0002072 ! hypodermis
[Term]
id: UBERON:0008876
name: hypodermis muscle layer
def: "the skeletal muscle layer in the superficial fascia" [MP:0011157]
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0002190 {source="MP"} ! subcutaneous adipose tissue
[Term]
id: UBERON:0008877
name: epidermal-dermal junction
def: "the multi-layer basement membrane between the dermis and epidermis that serves to adhere the dermis and epidermis, provide mechanical support for the epidermis, and forms a barrier to cells and large molecules across the junction" [MP:0011159]
synonym: "dermal-epidermal junction" EXACT [FMA:70963]
xref: FMA:70963
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005769 ! basement membrane
relationship: adjacent_to UBERON:0001003 ! epidermis
relationship: adjacent_to UBERON:0002067 ! dermis
relationship: part_of UBERON:0000014 {source="MP"} ! zone of skin
[Term]
id: UBERON:0008878
name: palmar part of hand
synonym: "front of hand" EXACT [FMA:24920]
synonym: "palm" EXACT [FMA:24920]
synonym: "palm of hand" EXACT [FMA:24920]
synonym: "palmar region" EXACT [FMA:24920]
synonym: "regio palmaris" EXACT [FMA:TA]
xref: FMA:24920
xref: galen:Palm
xref: ncithesaurus:Palmar_Region
is_a: UBERON:0005451 {source="FMA"} ! segment of hand
is_a: UBERON:0008837 ! palmar/plantar part of autopod
[Term]
id: UBERON:0008879
name: ligament of pinna
comment: subclasses (anterior, superior, posterior) can be added on request
synonym: "auricular ligament" EXACT [MA:0001228]
synonym: "ligament of auricle" EXACT [FMA:61035]
synonym: "pinna ligament" EXACT [FMA:61035]
xref: FMA:61035
xref: MA:0001228
xref: SCTID:362548009
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament
relationship: part_of UBERON:0001757 {source="MA"} ! pinna
[Term]
id: UBERON:0008880
name: annelid pygidium
def: "Rearmost segment of annelid worms." [Wikipedia:Annelid#Segmentation]
is_a: UBERON:0000914 ! organismal segment
[Term]
id: UBERON:0008881
name: rostral migratory stream
def: "Unique telencephalic subventricular zones that extend from the lateral ventricles into the olfactory bulbs. Newly produced GABAergic interneurons migrate along the RMS and settle in the bulb[NIF]. In rodents, the anterior region of the SVZ produces neuroblasts that migrate in chain toward the olfactory bulb along the so-called rostral migratory stream (RMS)[BTO]. the transient structure formed by neurons migrating from the subventricular zone into the olfactory bulbs[MP] he rostral migratory stream (RMS) or rostral migratory pathway is a pathway, found in the brain of some animals, along which neuronal precursors that originated in the subventricular zone (SVZ) of the brain migrate to reach the main olfactory bulb, where they differentiate into interneurons. Neurogenesis has been shown to occur in the SVZ into adulthood[WP]" [[Wikipedia:Rostral_migratory_stream, MP:0004279, NIF_GrossAnatomy:birnlex_1702, PMID:12453055]
synonym: "RMS" RELATED [BTO:0003412]
synonym: "rostral migratory pathway" RELATED [Wikipedia:Rostral_migratory_stream]
xref: BTO:0003412
xref: NIF_GrossAnatomy:birnlex_1702
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: overlaps UBERON:0002264 {source="MP-modified"} ! olfactory bulb
relationship: part_of UBERON:0001870 {source="BTO"} ! frontal cortex
relationship: part_of UBERON:0002285 {source="BTO"} ! lateral ventricle
[Term]
id: UBERON:0008882
name: spinal cord commissure
def: "The nerve fiber tracts that span the midline of the spinal cord" [MP:0009694]
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0007699 ! tract of spinal cord
relationship: part_of UBERON:0002240
intersection_of: UBERON:0001020 ! commissure
intersection_of: part_of UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0008883
name: osteoid
def: "Bone tissue that is an unmineralized bone matrix deposited by osteoblasts prior to the mineralization of bone tissue[VSAO]. Unmineralized, organic portion of the bone matrix that forms prior to the maturation of bone tissue. Osteoblasts begin the process of forming bone tissue by secreting the osteoid as several specific proteins. When the osteoid becomes mineralized, it and the adjacent bone cells have developed into new bone tissue[WP]" [VSAO:0000046, Wikipedia:Osteoid]
comment: AO notes: Note that in VSAO this was classified both as tissue and acellular extracellular matrix. Consider also the AEO class 'bone condensation'. is_a intercellular matrix in FMA.
synonym: "pre-bone" EXACT [PSPUB:0000170]
synonym: "prebone" EXACT [VSAO:curator]
synonym: "prebone tissue" EXACT [FMA:66830]
xref: FMA:66830
xref: galen:Osteoid
xref: http://upload.wikimedia.org/wikipedia/commons/9/9c/Active_osteoblasts.jpg
xref: ncithesaurus:Osteoid
xref: SCTID:39365008
xref: VSAO:0000046
xref: XAO:0004035
property_value: UBPROP:0000001 "Bone tissue that is an unmineralized bone matrix deposited by osteoblasts prior to the mineralization of bone tissue.[VSAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass proteinaceous extracellular matrix (VSAO:0000021)[VSAO]" xsd:string
is_a: UBERON:0002481 {source="VSAO"} ! bone tissue
[Term]
id: UBERON:0008884
name: left putamen
xref: FMA:72829
is_a: UBERON:0001874 ! putamen
relationship: part_of UBERON:0002812
intersection_of: UBERON:0001874 ! putamen
intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere
relationship: part_of UBERON:0002812 ! left cerebral hemisphere
[Term]
id: UBERON:0008885
name: right putamen
xref: FMA:72828
is_a: UBERON:0001874 ! putamen
relationship: part_of UBERON:0002813
intersection_of: UBERON:0001874 ! putamen
intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere
relationship: part_of UBERON:0002813 ! right cerebral hemisphere
[Term]
id: UBERON:0008886
name: pulmonary vascular system
def: "Subdivision of cardiovascular system which has as its parts the pulmonary arterial and venous tree organs." [FMA:45621, Wikipedia:Pulmonary_circulation]
synonym: "pulmonary circulatory system" EXACT [FMA:45621]
xref: FMA:45621
is_a: UBERON:0007798 {source="Obol"} ! vascular system
relationship: part_of UBERON:0004535 {source="FMA"} ! cardiovascular system
[Term]
id: UBERON:0008887
name: rectal venous plexus
def: "The hemorrhoidal plexus (or rectal venous plexus) surrounds the rectum, and communicates in front with the vesical venous plexus in the male, and the uterovaginal plexus in the female. A free communication between the portal and systemic venous systems is established through the hemorrhoidal plexus." [Wikipedia:Rectal_venous_plexus]
synonym: "haemorrhoidal plexus" RELATED [Wikipedia:Rectal_venous_plexus]
synonym: "hemorrhoidal plexus" RELATED [Wikipedia:Rectal_venous_plexus]
synonym: "plexus venosus rectalis, plexus haemorrhoidalis" RELATED LATIN [Wikipedia:Rectal_venous_plexus]
xref: FMA:18933
xref: http://upload.wikimedia.org/wikipedia/commons/6/69/Gray587.png
xref: ncithesaurus:Hemorrhoidal_Plexus
xref: SCTID:303051005
is_a: UBERON:0001593 {source="FMA"} ! venous plexus
relationship: surrounds UBERON:0001052
intersection_of: UBERON:0001593 ! venous plexus
intersection_of: surrounds UBERON:0001052 ! rectum
relationship: surrounds UBERON:0001052 ! rectum
[Term]
id: UBERON:0008888
name: vesical venous plexus
def: "The vesical plexus envelops the lower part of the bladder and the base of the prostate and communicates with the pudendal and prostatic plexuses. It is drained, by means of several vesical veins, into the hypogastric veins." [Wikipedia:Vesical_venous_plexus]
synonym: "plexus venosus vesicalis" RELATED LATIN [Wikipedia:Vesical_venous_plexus]
xref: FMA:18934
xref: http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png
xref: SCTID:31510008
is_a: UBERON:0001593 {source="FMA"} ! venous plexus
[Term]
id: UBERON:0008889
name: uterine venous plexus
def: "The uterine plexuses lie along the sides and superior angles of the uterus between the two layers of the broad ligament, and communicate with the ovarian and vaginal plexuses. They are drained by a pair of uterine veins on either side: these arise from the lower part of the plexuses, opposite the external orifice of the uterus, and open into the corresponding hypogastric vein." [Wikipedia:Uterine_venous_plexus]
synonym: "plexus venosus uterinus" RELATED LATIN [Wikipedia:Uterine_venous_plexus]
synonym: "uterine plexus" RELATED [Wikipedia:Uterine_venous_plexus]
xref: FMA:29712
xref: http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png
xref: SCTID:294553007
is_a: UBERON:0001593 {source="FMA"} ! venous plexus
[Term]
id: UBERON:0008891
name: external gill
def: "External gills are the gills of an animal, most typically an amphibian, that are exposed to the environment, rather than set inside the pharynx and covered by gill slits, as they are in most fishes." [BTO:0004689]
xref: AAO:0010174
xref: BTO:0004689
xref: XAO:0000120
is_a: UBERON:0002535 {source="BTO"} ! gill
[Term]
id: UBERON:0008892
name: internal gill
xref: AAO:0010176
is_a: UBERON:0002535 {source="AAO"} ! gill
[Term]
id: UBERON:0008894
name: gill precursor
def: "A primordium or bud that develops into a gill." []
synonym: "gill primordium" EXACT [XAO:0000448]
synonym: "internal gill bud" EXACT [ZFA:0001107]
xref: TAO:0001107
xref: XAO:0000448
xref: ZFA:0001107
is_a: UBERON:0001048 {source="XAO"} ! primordium
relationship: develops_from UBERON:0003114 {source="XAO"} ! pharyngeal arch 3
relationship: develops_from UBERON:0003115 {source="XAO"} ! pharyngeal arch 4
relationship: develops_from UBERON:0004117 {source="ZFA"} ! pharyngeal pouch
[Term]
id: UBERON:0008895
name: splanchnocranium
def: "Subdivision of endoskeleton derived from pharyngeal arches" [ISBN10:0073040584, UBERON:cjm, Wikipedia:Facial_skeleton]
comment: AO notes: VSAO labels this term 'pharyngeal arch' (2012-06-01) - however, it clearly means pharyngeal arch skeleton. Editor/AO notes: many sources define this as the part of the endoskeletal that is from pharyngeal arches - this would make it part-disjoint from dermatocranium. However, there are many bones in AOs that have part-paths to both
synonym: "branchial arch skeleton" RELATED []
synonym: "gill arch skeleton" RELATED []
synonym: "pharyngeal arch" RELATED INCONSISTENT [VSAO:0000149]
synonym: "pharyngeal arch skeleton" RELATED [ZFA:0001216]
synonym: "pharyngeal skeleton" RELATED [ZFA:0001216]
synonym: "visceral skeleton" RELATED [UBERONREF:0000007]
synonym: "viscerocranium" EXACT INCONSISTENT [VHOG:0000315, Wikipedia:Viscerocranium, ZFA:0001216]
xref: AAO:0010157
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg
xref: TAO:0001216
xref: VHOG:0000315
xref: VSAO:0000149
xref: XAO:0003176
xref: ZFA:0001216
property_value: UBPROP:0000001 "Anatomical cluster that is part of the cranium and consists of the jaws, hyoid and branchial arches.[TAO]" xsd:string
property_value: UBPROP:0000001 "Anatomical cluster that is part of the cranium and consists of the jaws, hyoid, and branchial arches.[AAO]" xsd:string
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system
disjoint_from: UBERON:0011156 ! facial skeleton
relationship: develops_from UBERON:0002539 ! pharyngeal arch
relationship: has_developmental_contribution_from UBERON:0003099 {source="PMID:11237469", notes="redundant", source="Grays"} ! cranial neural crest
relationship: overlaps UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0008896
name: post-hyoid pharyngeal arch
def: "A pharyngeal arch that is posterior to the hyoid arch. i.e. any pharyngeal arch with a number 3 or higher." [UBERON:cjm]
synonym: "branchial arch" EXACT [ZFA:0001613]
synonym: "branchial arches" EXACT PLURAL [ZFA:0001613]
synonym: "branchial bar" EXACT [ZFA:0001613]
synonym: "branchial bars" EXACT PLURAL [ZFA:0001613]
synonym: "gill arch" EXACT [ZFA:0001613]
synonym: "gill arches 1-5" EXACT [ZFA:0001613]
synonym: "pharyngeal arch 3-7" EXACT [ZFA:0001613]
synonym: "visceral arches 3-7" EXACT [ZFA:0001613]
xref: AAO:0010362
xref: BTO:0002152
xref: SCTID:308766004
xref: TAO:0001597
xref: XAO:0000099
xref: ZFA:0001613
property_value: UBPROP:0000001 "Posterior-most stream of cranial neural crest, which sub-divides during migration.[AAO]" xsd:string
is_a: UBERON:0002539 {source="ZFA"} ! pharyngeal arch
[Term]
id: UBERON:0008897
name: fin
def: "An external membranous process of an aquatic animal as a fish used in propelling or guiding the body." [BTO:0004649, Wikipedia:Fin]
xref: AAO:0010374
xref: BTO:0004649
xref: EFO:0000875
xref: MAT:0000087
xref: MESH:A13.077
xref: MIAA:0000087
xref: OpenCyc:Mx4rvVjcBZwpEbGdrcN5Y29ycA
xref: SCTID:73003005
xref: TAO:0000108
xref: VSAO:0000099
xref: XAO:0000002
xref: ZFA:0000108
property_value: RO:0002161 NCBITaxon:8782
property_value: UBPROP:0000001 "Surface structure involved in locomotion.[TAO]" xsd:string
property_value: UBPROP:0000001 "Surface structure involved in locomotion.[VSAO]" xsd:string
is_a: UBERON:0003102 ! surface structure
[Term]
id: UBERON:0008902
name: lateral recess of third vetricle
def: "Lateral protrusion of the third ventricle." [ZFIN:curator]
synonym: "lateral recess" BROAD PLURAL [ZFA:0000231]
synonym: "lateral recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27]
xref: TAO:0000231
xref: ZFA:0000231
is_a: UBERON:0000464 {source="ZFA"} ! anatomical space
relationship: part_of UBERON:0002286 {source="ZFA"} ! third ventricle
[Term]
id: UBERON:0008904
name: neuromast
def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:ZDB-PUB-961014-576]
synonym: "lateral line neuromast" EXACT [ZFA:0000243]
synonym: "lateral line organ" EXACT [ZFA:0000243]
synonym: "neuromasts" EXACT PLURAL [ZFA:0000243]
xref: AAO:0001004
xref: TAO:0000243
xref: ZFA:0000243
property_value: UBPROP:0000001 "Type of mechanoreceptive organ of the lateral line which are arranged in lines on the body surface. These organs are constituted by hair cells and supporting cells and it is located in the epidermis with its hair cells exposed to the surface. Absent in some caecilians. These receptors receive afferent and efferent innervations.[AAO]" xsd:string
property_value: UBPROP:0000001 "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of lateral line receptor organ (AAO:0001001)[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass lateral line receptor (AAO:0010705)[AAO]" xsd:string
is_a: UBERON:0000477 {source="ZFA"} ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0010202 ! lateral line
[Term]
id: UBERON:0008906
name: lateral line nerve
def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [ZFIN:curator]
synonym: "lateral line nerves" EXACT PLURAL [ZFA:0001479]
xref: AAO:0010077
xref: TAO:0001479
xref: ZFA:0001479
property_value: UBPROP:0000001 "Any of the sensory nerves that innervate mechano- and electroreceptors of the lateral line system. The lateral line nerves may be separated in two components, anterior and posterior, in relation to the position of its roots with respect to the otic capsule. These nerves develop from lateral line placodes.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: innervates lateral line receptor organ (AAO:0001001)[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: part_of_proxy lateral line system (AAO:0000975) CHANGED TO: part_of lateral line system (UBERON:0002540)[AAO]" xsd:string
is_a: UBERON:0001785 {source="AAO"} ! cranial nerve
relationship: part_of UBERON:0002540
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002540 ! lateral line system
relationship: develops_from UBERON:0009128 {source="NBK53175"} ! lateral line placode
relationship: part_of UBERON:0002540 {source="ZFA"} ! lateral line system
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0008907
name: dermal bone
def: "Skeletal element that forms superficially in the organism, usually in association with the ectoderm." [VSAO:0000130, VSAO:curator]
comment: Note that other AOs are not yet in sync with this classification
xref: AAO:0010769
xref: TAO:0001590
xref: VSAO:0000130
xref: XAO:0004015
xref: ZFA:0001590
property_value: UBPROP:0000001 "Intramembranous bone that forms superficially in the organism.[TAO]" xsd:string
is_a: UBERON:0007842 {source="VSAO"} ! membrane bone
relationship: part_of UBERON:0010364
intersection_of: UBERON:0007842 ! membrane bone
intersection_of: part_of UBERON:0010364 ! dermal skeleton
relationship: part_of UBERON:0010364 ! dermal skeleton
relationship: part_of UBERON:0010364 {source="VSAO"} ! dermal skeleton
[Term]
id: UBERON:0008909
name: perichordal bone
def: "Bone element that is adjacent to the notochord." [VSAO:0000307]
comment: Editor notes: We go with the latest VSAO in making this a subtype of bone, and add a logical definition based on the textual definition in VSAO
synonym: "perichordal bone" RELATED [ZFA:0001629]
synonym: "perichordal bones" EXACT PLURAL [ZFA:0001629]
xref: AAO:0010777
xref: TAO:0001639
xref: VSAO:0000307
xref: ZFA:0001629
property_value: UBPROP:0000001 "Replacement bone that forms within the connective tissue surrounding the notochord.[TAO]" xsd:string
is_a: UBERON:0001474 ! bone
relationship: adjacent_to UBERON:0002328
intersection_of: UBERON:0001474 ! bone
intersection_of: adjacent_to UBERON:0002328 ! notochord
disjoint_from: UBERON:0008913 ! perichondral bone
relationship: adjacent_to UBERON:0002328 ! notochord
[Term]
id: UBERON:0008911
name: chondral bone
def: "Replacement bone that forms within or surrounding a cartilaginous skeletal element." [zfin:curator]
comment: Consider obsoleting
synonym: "chondral bone" RELATED [ZFA:0001693]
xref: AAO:0010774
xref: ZFA:0001693
is_a: UBERON:0004763 {source="ZFA"} ! endochondral bone tissue
[Term]
id: UBERON:0008913
name: perichondral bone
def: "Bone element that is located on the surface of a cartilage element." [VSAO:0000308]
synonym: "perichondral bone" RELATED [ZFA:0001630]
synonym: "perichondral bones" EXACT PLURAL [ZFA:0001630]
xref: AAO:0010779
xref: TAO:0001638
xref: VSAO:0000308
xref: ZFA:0001630
property_value: UBPROP:0000001 "Replacement bone that forms within the connective tissue surrounding cartilage.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: participates_in perichondral ossification (GO:0036073)[VSAO]" xsd:string
is_a: UBERON:0001474 {source="VSAO"} ! bone
relationship: develops_from UBERON:0002222 {source="ZFA"} ! perichondrium
[Term]
id: UBERON:0008915
name: pore
def: "An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space." [TAO:curator]
xref: AAO:0010441
xref: ncithesaurus:Pore
xref: TAO:0001791
xref: ZFA:0005449
is_a: UBERON:0000464 {source="ZFA"} ! anatomical space
[Term]
id: UBERON:0008917
name: ampullary organ
def: "Organ that consists of receptor cells located within an epidermal invagination and functions as an electroreceptor." [TAO:wd]
subset: organ_slim
synonym: "ampullary electroreceptor organ" EXACT [TAO:0002104]
xref: AAO:0001006
xref: TAO:0002104
property_value: UBPROP:0000001 "An electroreceptor consisting of receptor cells sunk into the epidermis or located in an epidermal cavity opening to the surface through a duct and pore. It can detect weak electric currents generated by other animals.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of lateral line receptor organ (AAO:0001001)[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass lateral line receptor organ (AAO:0001001)[AAO]" xsd:string
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0003103 {source="TAO"} ! compound organ
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010521 ! electroreceptor organ
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0008918
name: ampulla of Lorenzini
def: "The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores... Each ampulla consists of a jelly-filled canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP]." [Wikipedia:Ampullae_of_Lorenzini]
subset: organ_slim
synonym: "ampullae of Lorenzini" EXACT PLURAL [Wikipedia:Ampullae_of_Lorenzini]
xref: http://upload.wikimedia.org/wikipedia/commons/8/88/Electroreceptors_in_a_sharks_head.svg
property_value: RO:0002161 NCBITaxon:32443
property_value: RO:0002161 NCBITaxon:32523
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0003103 ! compound organ
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010521 ! electroreceptor organ
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0008919
name: mesenchyme from somatopleure
is_obsolete: true
replaced_by: UBERON:0010377
[Term]
id: UBERON:0008920
name: mesenchyme from splanchnopleure
is_obsolete: true
replaced_by: UBERON:0010378
[Term]
id: UBERON:0008921
name: substratum of layer of retina
def: "." [http://retina.anatomy.upenn.edu/~lance/eye/retina_gross.html, UBERON:CL_meeting_20110725]
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0008922
name: sublaminar layer S1
def: "A retinal neural layer that is immediately adjacent to the inner nuclear layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm]
xref: CP:0000113
is_a: UBERON:0008921 ! substratum of layer of retina
relationship: adjacent_to UBERON:0001791
relationship: adjacent_to UBERON:0008923
intersection_of: UBERON:0008921 ! substratum of layer of retina
intersection_of: adjacent_to UBERON:0001791 ! inner nuclear layer of retina
intersection_of: adjacent_to UBERON:0008923 ! sublaminar layer S2
relationship: adjacent_to UBERON:0001791 ! inner nuclear layer of retina
relationship: adjacent_to UBERON:0008923 ! sublaminar layer S2
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2
[Term]
id: UBERON:0008923
name: sublaminar layer S2
def: "A retinal neural layer that is immediately adjacent to the S1 and S3 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm]
xref: CP:0000114
is_a: UBERON:0008921 ! substratum of layer of retina
relationship: adjacent_to UBERON:0008922
relationship: adjacent_to UBERON:0008924
intersection_of: UBERON:0008921 ! substratum of layer of retina
intersection_of: adjacent_to UBERON:0008922 ! sublaminar layer S1
intersection_of: adjacent_to UBERON:0008924 ! sublaminar layer S3
relationship: adjacent_to UBERON:0008922 ! sublaminar layer S1
relationship: adjacent_to UBERON:0008924 ! sublaminar layer S3
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2
relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3
[Term]
id: UBERON:0008924
name: sublaminar layer S3
def: "A retinal neural layer that is immediately adjacent to the S2 and S4 layers and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm]
xref: CP:0000115
is_a: UBERON:0008921 ! substratum of layer of retina
relationship: adjacent_to UBERON:0008923
relationship: adjacent_to UBERON:0008925
intersection_of: UBERON:0008921 ! substratum of layer of retina
intersection_of: adjacent_to UBERON:0008923 ! sublaminar layer S2
intersection_of: adjacent_to UBERON:0008925 ! sublaminar layer S4
relationship: adjacent_to UBERON:0008923 ! sublaminar layer S2
relationship: adjacent_to UBERON:0008925 ! sublaminar layer S4
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3
[Term]
id: UBERON:0008925
name: sublaminar layer S4
def: "A retinal neural layer that is immediately adjacent to the S3 and S5 layer and comprises 20 percent of the inner plexiform layer of retina." [GOC:tfm]
xref: CP:0000116
is_a: UBERON:0008921 ! substratum of layer of retina
relationship: adjacent_to UBERON:0008924
relationship: adjacent_to UBERON:0008926
intersection_of: UBERON:0008921 ! substratum of layer of retina
intersection_of: adjacent_to UBERON:0008924 ! sublaminar layer S3
intersection_of: adjacent_to UBERON:0008926 ! sublaminar layer S5
relationship: adjacent_to UBERON:0008924 ! sublaminar layer S3
relationship: adjacent_to UBERON:0008926 ! sublaminar layer S5
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5
[Term]
id: UBERON:0008926
name: sublaminar layer S5
def: "A retinal neural layer that is immediately adjacent to the retinal ganglion cell layer and comprises 20 percent of the ganglion plexiform layer of retina." [GOC:tfm]
xref: CP:0000117
is_a: UBERON:0008921 ! substratum of layer of retina
relationship: adjacent_to UBERON:0001792
relationship: adjacent_to UBERON:0008925
intersection_of: UBERON:0008921 ! substratum of layer of retina
intersection_of: adjacent_to UBERON:0001792 ! ganglionic layer of retina
intersection_of: adjacent_to UBERON:0008925 ! sublaminar layer S4
relationship: adjacent_to UBERON:0001792 ! ganglionic layer of retina
relationship: adjacent_to UBERON:0008925 ! sublaminar layer S4
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5
[Term]
id: UBERON:0008927
name: sublaminar layers S1 or S2
def: "One of sublaminar layers S1 or S2." [GOC:tfm]
xref: CP:0000118
is_a: UBERON:0008921 ! substratum of layer of retina
union_of: UBERON:0008922 ! sublaminar layer S1
union_of: UBERON:0008923 ! sublaminar layer S2
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
[Term]
id: UBERON:0008928
name: sublaminar layers S2 or S3
def: "One of sublaminar layers S2 or S3." [GOC:tfm]
xref: CP:0000119
is_a: UBERON:0008921 ! substratum of layer of retina
union_of: UBERON:0008923 ! sublaminar layer S2
union_of: UBERON:0008924 ! sublaminar layer S3
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
[Term]
id: UBERON:0008929
name: sublaminar layers S4 or S5
def: "One of sublaminar layers S4 or S5." [GOC:tfm]
xref: CP:0000120
is_a: UBERON:0008921 ! substratum of layer of retina
union_of: UBERON:0008925 ! sublaminar layer S4
union_of: UBERON:0008926 ! sublaminar layer S5
relationship: part_of UBERON:0001795 ! inner plexiform layer of retina
[Term]
id: UBERON:0008930
name: somatosensory cortex
def: "Area of the parietal lobe concerned with receiving general sensations. It lies posterior to the central sulcus." [MESH:A.08.186.211.730.885.213.670.675]
comment: TODO - add layers
synonym: "somesthetic area" RELATED [BTO:0004353]
xref: BTO:0004353
xref: GAID:681
xref: MESH:A.08.186.211.730.885.213.670.675
xref: SCTID:279252006
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0002581 {source="BTO"} ! postcentral gyrus
[Term]
id: UBERON:0008933
name: primary somatosensory cortex
comment: ABA disjointness - Removed relationship: part_of UBERON:0001870 {source="MA"}
xref: MA:0000908
is_a: UBERON:0008930 ! somatosensory cortex
relationship: part_of UBERON:0001872 {source="MA"} ! parietal lobe
[Term]
id: UBERON:0008934
name: secondary somatosensory cortex
comment: TODO - check brodmann
xref: MA:0000918
is_a: UBERON:0008930 ! somatosensory cortex
relationship: part_of UBERON:0001872 {source="MA"} ! parietal lobe
[Term]
id: UBERON:0008935
name: albumen gland
def: "The posterior oviduct opens into the large white albumen gland which adds a layer of albumen to the zygote before it reaches the egg capsule gland." [BTO:0000054]
xref: BTO:0000054
is_a: UBERON:0005398 {source="BTO"} ! female reproductive gland
[Term]
id: UBERON:0008936
name: gastropod genital pore
def: "A small opening on the side of the head in some gastropods through which the penis is protruded." [BTO:0004684]
synonym: "genital orifice" RELATED [BTO:0004684]
synonym: "genital pore" EXACT [BTO:0004684]
xref: BTO:0004684
is_a: UBERON:0000161 ! orifice
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000990 {source="BTO"} ! reproductive system
[Term]
id: UBERON:0008937
name: visceral hump
def: "Mollusks have three distinct divisions of their body. The head contains the sensory equipment (eyes, antennae, etc) and the primitive brain. The visceral hump, which is the main body, contains most of the organs, including a complete digestive and excretory tract as well as the reproductive organs. The visceral hump also includes the two external flaps of tissue, which are known as the mantle." [BTO:0001448, http://www.britannica.com/EBchecked/topic/630349/visceral-hump]
synonym: "visceral sac" RELATED [BTO:0001448]
xref: BTO:0001448
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0008939
name: pedal ganglion
def: "The pedal ganglia mainly are necessary for coordination of locomotion of a snail." [BTO:0001012]
xref: BTO:0001012
is_a: UBERON:0000045 {source="BTO"} ! ganglion
relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump
[Term]
id: UBERON:0008940
name: parietal ganglion
def: "The lateral ganglia of a snail nervous system are called parietal ganglia. They innerve pallial cavity, gills and skin." [BTO:0001841]
xref: BTO:0001841
is_a: UBERON:0000045 {source="BTO"} ! ganglion
relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump
[Term]
id: UBERON:0008941
name: pleural ganglion
def: "The pallial cavity's nerve knots are called pleural ganglia. They innerve primarily the mantle or a snail." [BTO:0001842]
xref: BTO:0001842
is_a: UBERON:0000045 {source="BTO"} ! ganglion
relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump
[Term]
id: UBERON:0008942
name: gastropod cerebral ganglion
def: "The cerebral ganglia are primarily sensual centres, that compute information from the eyes as well as from the tactile and position sensors (statocystes). Besides coordination they also serve the locational memory of a snail." [BTO:0001843]
synonym: "cerebral ganglion" EXACT [BTO:0001843]
xref: BTO:0001843
is_a: UBERON:0000045 {source="BTO"} ! ganglion
[Term]
id: UBERON:0008943
name: headfoot
def: "The head-foot is the part you see most easily in slugs and snails. It is mostly a muscular organ covered in cilia and rich in mucous cells, which the mollusc uses to move around, it normally tapers to a tail at one end and has a head incorporated in the front. The head includes a mouth, eyes and tentacles, the last two may be much reduced or even absent. In those species with shells the head-foot can be drawn into the shell." [BTO:0003509]
xref: BTO:0003509
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0008944
name: albumen
def: "Albumen is the clear liquid contained within an egg and consists of water and proteins, among which are ovomucin and ovomucoid. It protects the egg yolk and provides additional nutrition for the growth of the embryo." [GO:0097099, https://sourceforge.net/tracker/index.php?func=detail&aid=3357613&group_id=36855&atid=440764, Wikipedia:Albumen]
synonym: "egg white" EXACT [GO:0097099]
xref: GO:0097099
xref: ncithesaurus:Egg_White
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0007379 ! egg
[Term]
id: UBERON:0008945
name: extraembryonic endoderm
def: "." [http://www.ana.ed.ac.uk/database/humat/notes/extraemb/mesoder.htm]
comment: The origin of extraembryonic endoderm is a highly controversial issue...
xref: EHDAA2:0000473
xref: EHDAA:105
xref: EMAPA:16052
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0005292 ! extraembryonic tissue
relationship: develops_from UBERON:0008776 {source="EHDAA2"} ! inner cell mass derived hypoblast
[Term]
id: UBERON:0008946
name: lung parenchyma
synonym: "respiratory portion of lung" EXACT [FMA:27360]
xref: FMA:27360
xref: SCTID:201712001
is_a: UBERON:0000353 {source="FMA"} ! parenchyma
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002048
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002048 {source="FMA"} ! lung
[Term]
id: UBERON:0008947
name: respiratory primordium
xref: EHDAA2:0004069
xref: ncithesaurus:Respiratory_Primordium
is_a: UBERON:0001048 {source="Obol"} ! primordium
relationship: part_of UBERON:0003258 ! endoderm of foregut
[Term]
id: UBERON:0008948
name: upper lobe of lung
synonym: "cranial lobe of lung" EXACT [UBERON:cjm]
synonym: "lobus superior" EXACT [FMA:7334]
synonym: "lobus superior pulmonis" EXACT [FMA:TA]
synonym: "superior lobe of lung" EXACT [FMA:7334]
xref: FMA:7334
xref: galen:UpperLobeOfLung
xref: ncithesaurus:Lung_Upper_Lobe
xref: SCTID:303548008
is_a: UBERON:0000101 {source="FMA"} ! lobe of lung
disjoint_from: UBERON:0008955 ! middle lobe/projection of lung
[Term]
id: UBERON:0008949
name: lower lobe of lung
synonym: "inferior lobe of lung" EXACT [UBERON:cjm]
synonym: "lobus inferior" EXACT [UBERON:cjm]
synonym: "lobus inferior pulmonis" EXACT [UBERON:cjm]
xref: FMA:7335
xref: galen:LowerLobeOfLung
xref: ncithesaurus:Lung_Lower_Lobe
xref: SCTID:303549000
is_a: UBERON:0000101 {source="FMA"} ! lobe of lung
disjoint_from: UBERON:0008955 ! middle lobe/projection of lung
[Term]
id: UBERON:0008950
name: azygous lobe of lung
def: "The azygous lobe of the lung is an accessory lobe of the right lung. It is rare and usually associated with an abnormality of the azygous vein. It is produced by an aberrant position of the azygous vein near the hilum of the lung. It divides the right superior lobe near the apex of the lung down to the hilum in roughly the median plane. The fissure created, the meso-azygous fissure, is lined by both visceral and parietal pleura. The lobe lies superomedial to the fissure." [http://www.e-radiography.net/radpath/a/azygoslobe.htm, http://www.gpnotebook.co.uk]
is_a: UBERON:0004890 ! right lung accessory lobe
[Term]
id: UBERON:0008951
name: left lung lobe
synonym: "lobe of left lung" EXACT []
synonym: "lobe of the left lung" EXACT []
xref: EHDAA:2981
xref: ncithesaurus:Lobe_of_the_Left_Lung
xref: SCTID:272655003
is_a: UBERON:0000101 ! lobe of lung
relationship: part_of UBERON:0002168
intersection_of: UBERON:0000101 ! lobe of lung
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0008952
name: upper lobe of left lung
def: "The lobe of the left lung that is closest to the head." [UBERON:cjm]
synonym: "left lung cranial lobe" EXACT [EHDAA2:0000953]
synonym: "left upper lobe" EXACT [FMA:7370]
synonym: "left upper lobe of lung" EXACT [FMA:7370]
synonym: "lobus superior pulmonis sinistri" EXACT [FMA:TA]
synonym: "superior lobe of left lung" EXACT [FMA:7370]
xref: EHDAA2:0000953
xref: EHDAA:4957
xref: FMA:7370
xref: galen:UpperLobeOfLeftLung
xref: ncithesaurus:Upper_Lobe_of_the_Left_Lung
xref: SCTID:361984006
is_a: UBERON:0008948 {source="FMA"} ! upper lobe of lung
is_a: UBERON:0008951 ! left lung lobe
relationship: part_of UBERON:0002168
intersection_of: UBERON:0008948 ! upper lobe of lung
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0008953
name: lower lobe of left lung
synonym: "inferior lobe of left lung" EXACT [FMA:7371]
synonym: "left lower lobe" EXACT [FMA:7371]
synonym: "left lower lobe of lung" EXACT [FMA:7371]
synonym: "left lung caudal lobe" EXACT [EHDAA2:0000945]
synonym: "lobus inferior (pulmo sinister)" EXACT [FMA:7371]
synonym: "lobus inferior pulmonis sinistri" EXACT [FMA:TA]
xref: EHDAA2:0000945
xref: EHDAA:4949
xref: FMA:7371
xref: galen:LowerLobeOfLeftLung
xref: ncithesaurus:Lower_Lobe_of_the_Left_Lung
xref: SCTID:361989001
is_a: UBERON:0008949 {source="FMA"} ! lower lobe of lung
is_a: UBERON:0008951 ! left lung lobe
relationship: part_of UBERON:0002168
intersection_of: UBERON:0008949 ! lower lobe of lung
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0008954
name: lingula of left lung
comment: the lingula of the left lung in humans is not normally considered a true lobe
synonym: "left pulmonary lingula" EXACT [FMA:7433]
synonym: "lingula of lung" EXACT [FMA:7433]
synonym: "middle lobe of left lung" EXACT [galen:MiddleLobeOfLeftLung]
xref: FMA:7433
xref: galen:MiddleLobeOfLeftLung
xref: ncithesaurus:Lingula
xref: SCTID:184916009
is_a: UBERON:0008951 ! left lung lobe
is_a: UBERON:0008955 ! middle lobe/projection of lung
relationship: part_of UBERON:0002168
intersection_of: UBERON:0008955 ! middle lobe/projection of lung
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0008955
name: middle lobe/projection of lung
synonym: "middle lobe of lung" EXACT [galen:MiddleLobeOfLung]
xref: galen:MiddleLobeOfLung
xref: SCTID:362900002
is_a: UBERON:0000101 ! lobe of lung
[Term]
id: UBERON:0008956
name: involucrum
def: "a layer of new bone growth outside existing bone seen in pyogenic osteomyelitis. It results from the stripping off of the periosteum by the accumulation of pus within the bone, and new bone growing from the periosteum." [Wikipedia:Involucrum]
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone
[Term]
id: UBERON:0008957
name: sequestrum
def: "a piece of dead bone that has become separated during the process of necrosis from normal/sound bone.." [Wikipedia:Sequestrum]
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001474 {source="Wikipedia"} ! bone
[Term]
id: UBERON:0008958
name: cetacean involucrum
synonym: "whale involucrum" RELATED []
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001474 {source="Wikipedia:Evolution_of_cetaceans"} ! bone
[Term]
id: UBERON:0008959
name: auditory bulla
def: "a hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone." [Wikipedia:Auditory_bulla]
comment: In extant primates, the structure is found in tarsiers, lemurs, and lorises
synonym: "tympanic bulla" RELATED []
property_value: "homologous_to" UBERON:0011079
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001690 ! ear
relationship: part_of UBERON:0003113 {source="Kardong"} ! dermatocranium
[Term]
id: UBERON:0008960
name: melon organ
def: "The melon is an ovoid-shaped, fatty organ found in the forehead of all toothed whales (odontocetes), including dolphins and porpoises (Cranford et al., 1996; Harper, C. J., et al., 2008) and believed to be used in echolocation" [Wikipedia:Melon_(whale)]
is_a: UBERON:0010053 ! echolocation organ
[Term]
id: UBERON:0008961
name: parabronchus
def: "tertiary bronchi in the avian lung. The domestic fowl has some 500 parabronchi each 1 to 2 mm diameter with the wall of each containing the complex respiratory epithelium." [http://medical-dictionary.thefreedictionary.com/parabronchi]
subset: organ_slim
synonym: "parabronchia" RELATED PLURAL []
is_a: UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0008962
name: forelimb bone
def: "A bone that is part of a forelimb region. Examples: any hand phalanx, humerus. Counter-examples: scapula (it is part of the pectoral girdle)" [UBERON:cjm]
synonym: "free forelimb bone" EXACT [UBERON:cjm, UBERONREF:0000003]
synonym: "wing bone" NARROW SENSU [Geisha:syn]
xref: GAID:178
xref: MESH:A.02.835.232.087
xref: ncithesaurus:Bone_of_the_Upper_Extremity
xref: SCTID:368532003
is_a: UBERON:0002428 ! limb bone
is_a: UBERON:0010741 ! bone of pectoral complex
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002428 ! limb bone
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: develops_from UBERON:0010883 ! forelimb bone cartilaginous condensation
relationship: part_of UBERON:0001440 ! forelimb skeleton
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0008963
name: hoof
def: "The tip of a toe of an ungulate mammal, strengthened by a thick horny (keratin) covering. The hoof consists of a hard or rubbery sole, and a hard wall formed by a thick nail rolled around the tip of the toe. The weight of the animal is normally borne by both the sole and the edge of the hoof wall. Hooves grow continuously, and are constantly worn down by use." [Wikipedia:Hoof]
comment: The hoof is the integument of the foot. Like skin, the integument of the foot has three layers, namely the epidermis, dermis, and SC tissue.
xref: BTO:0003994
xref: SCTID:410026002
is_a: UBERON:0009564 ! distal limb integumentary appendage
[Term]
id: UBERON:0008964
name: abdominal ganglion of visceral hump
def: "The visceral sacs nerve knot is called visceral ganglion. In contrary to the mostly paired other ganglia this nerve knot is unpaired. The visceral ganglion innerves the pallial organs as well as the inner organs." [BTO:0000022]
synonym: "abdominal ganglion" RELATED [BTO:0000022]
synonym: "visceral ganglion" RELATED [BTO:0000022]
xref: BTO:0000022
is_a: UBERON:0000045 {source="BTO"} ! ganglion
disjoint_from: UBERON:0009758 ! abdominal ganglion
relationship: part_of UBERON:0008937 {source="BTO"} ! visceral hump
[Term]
id: UBERON:0008967
name: centrum semiovale
def: "The semioval center is the white matter found underneath the grey matter on the surface of the cerebrum. The term is synonymous with cerebral white matter. The white matter, located in each hemisphere between the cerebral cortex and nuclei, as a whole has a semioval shape. It consists of cortical projection fibers, association fibers and cortical fibers." [Wikipedia:Semioval_center]
comment: note that WP suggests a merge with cerebral white matter
synonym: "centrum semiovale" RELATED LATIN [Wikipedia:Semioval_center]
synonym: "medullary center" EXACT [FMA:61939]
synonym: "semioval center" RELATED [BTO:0000229]
synonym: "white matter of cerebrum" EXACT [FMA:61939]
xref: BTO:0000229
xref: FMA:61939
xref: http://upload.wikimedia.org/wikipedia/commons/9/95/Gray752.png
xref: SCTID:369198002
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0002437 {source="BTO"} ! cerebral white matter
[Term]
id: UBERON:0008969
name: dental follicle
def: "The dental follicle is a sac containing the developing tooth and its odontogenic organ. The dental follicle (DF) differentiates into the periodontal ligament. In addition, it may be the precursor of other cells of the periodontium, including osteoblasts, cementoblasts and fibroblasts. They develop into the alveolar bone, the cementum with Sharpey's fibers and the periodontal ligament fibers respectively." [Wikipedia:Dental_follicle]
synonym: "tooth follicle" RELATED [BTO:0000337]
xref: BTO:0000337
xref: SCTID:110975002
is_a: UBERON:0005087 {source="BTO"} ! tooth placode
relationship: develops_from UBERON:0002342 {source="PMID:19767574"} ! neural crest
relationship: part_of UBERON:0000165 {source="BTO"} ! mouth
[Term]
id: UBERON:0008971
name: left colon
def: "The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste." [BTO:0000646]
synonym: "distal colon" RELATED [BTO:0000646]
xref: BTO:0000646
xref: galen:LeftColon
xref: ncithesaurus:Left_Colon
xref: SCTID:362164005
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0001046 {source="BTO"} ! hindgut
relationship: part_of UBERON:0001155 {source="BTO"} ! colon
[Term]
id: UBERON:0008972
name: right colon
def: "The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption." [BTO:0000649]
synonym: "proximal colon" RELATED [BTO:0000649]
xref: BTO:0000649
xref: galen:RightColon
xref: ncithesaurus:Right_Colon
xref: SCTID:362161002
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0001045 {source="BTO"} ! midgut
relationship: part_of UBERON:0001155 {source="BTO"} ! colon
[Term]
id: UBERON:0008974
name: apocrine gland
def: "A gland whose discharged secretion contains part of the secreting cells." [BTO:0001162]
subset: organ_slim
xref: BTO:0001162
xref: SCTID:361698000
is_a: UBERON:0002530 {source="BTO"} ! gland
[Term]
id: UBERON:0008975
name: shell gland
def: "Any of various structures that secrete covering material for eggs or egg masses" [http://www.answers.com/topic/nidamental-gland]
subset: grouping_class
synonym: "nidamental gland" RELATED []
xref: BTO:0001241
xref: SCTID:14478002
is_a: UBERON:0005398 {source="BTO"} ! female reproductive gland
[Term]
id: UBERON:0008976
name: snake venom gland
def: "The venom gland of snakes is in actual fact a modified salivary gland and is linked to the groove in the fangs by a duct." [BTO:0001440]
comment: Editors note: todo - check the developmental relationship. Taxon notes: currently refers to venom gland of the snake, but could in future be generalized
subset: organ_slim
synonym: "poison gland" RELATED [BTO:0001440]
synonym: "venom gland" BROAD [BTO:0001440]
xref: BTO:0001440
xref: SCTID:362181001
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0011579 ! venom gland
relationship: develops_from UBERON:0001044 {source="BTO"} ! salivary gland
relationship: secretes UBERON:0007113 ! venom
[Term]
id: UBERON:0008977
name: pes anserinus of tibia
def: "The pes anserinus is the insertion of the conjoined tendons of three muscles onto the anteromedial (front and inside) surface of the proximal extremity of the tibia." [Wikipedia:Pes_anserinus_%28leg%29]
comment: Editors note: Consider adding muscle insertion site class
synonym: "pes anserine" RELATED [Wikipedia:Pes_anserinus_%28leg%29]
synonym: "pes anserinus" EXACT [BTO:0001507]
synonym: "pes anserinus of leg" RELATED [Wikipedia:Pes_anserinus_%28leg%29]
xref: BTO:0001507
xref: http://upload.wikimedia.org/wikipedia/commons/b/b1/Pes_anserinus.png
xref: SCTID:360767004
is_a: UBERON:0004256 ! hindlimb zeugopod muscle
relationship: part_of UBERON:0000043 {source="BTO"} ! tendon
relationship: part_of UBERON:0000979 ! tibia
[Term]
id: UBERON:0008978
name: anal sac
def: "In carnivores, either of two sacs found between the internal and external anal sphincters, lined with sebaceous glands and in some species with apocrine glands." [BTO:0001681]
xref: BTO:0001681
xref: MESH:A.13.073
xref: SCTID:362169000
is_a: UBERON:0000064 {source="BTO"} ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001245 {source="BTO"} ! anus
[Term]
id: UBERON:0008979
name: carcass
def: "A dead body." [BTO:0001965]
synonym: "cadaver" RELATED [BTO:0001965]
synonym: "dead body" RELATED [BTO:0001965]
xref: BTO:0001965
xref: SCTID:127853004
is_a: UBERON:0000061 {source="BTO"} ! anatomical structure
[Term]
id: UBERON:0008981
name: rhinencephalon
def: "The olfactory region of the brain, located in the cerebrum." [BTO:0002785]
synonym: "olfactory brain" RELATED [BTO:0002785]
xref: BTO:0002785
xref: SCTID:361576004
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0001893 {source="BTO"} ! telencephalon
[Term]
id: UBERON:0008982
name: fascia
def: "A dense regular connective tissue that that connects muscles together[WP, modified]." [Wikipedia:Fascia]
synonym: "fascia cluster" EXACT [FMA:30318]
xref: BTO:0002930
xref: EV:0100150
xref: FMA:30318
xref: MESH:A.02.340
xref: ncithesaurus:Fascia
xref: SCTID:181772008
is_a: UBERON:0007846 {source="Wikipedia"} ! dense regular collagenous tissue
relationship: connects UBERON:0001630 {cardinality="2"} ! muscle organ
relationship: connects UBERON:0001630 {notes="fasciae connect muscles to other muscles"} ! muscle organ
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0008987
name: renal parenchyma
def: "The functional tissue of the kidney, consisting of the nephrons." [BTO:0003604]
synonym: "kidney parenchyma" RELATED [BTO:0003604]
xref: BTO:0003604
xref: FMA:15574
xref: SCTID:29704000
is_a: UBERON:0000353 {source="FMA"} ! parenchyma
is_a: UBERON:0006554 {source="BTO"} ! urinary system structure
relationship: part_of UBERON:0002113
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 {source="FMA"} ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0008989
name: esophageal gland
def: "One of the racemose glands in the walls of the esophagus that in humans are small and serve principally to lubricate the food but in some birds secrete a milky fluid on which the young are fed." [BTO:0003634, Wikipedia:Esophageal_glands]
synonym: "glandulae oesophageae" EXACT [Wikipedia:Esophageal_glands]
synonym: "mucous gland of submucosa of esophagus" EXACT [FMA:9404]
xref: BTO:0003634
xref: FMA:9404
xref: http://upload.wikimedia.org/wikipedia/commons/e/e8/Illu_esophageal_layers.jpg
xref: ncithesaurus:Esophageal_Gland
xref: SCTID:322749003
is_a: UBERON:0003294 ! gland of foregut
is_a: UBERON:0005178 ! thoracic cavity organ
is_a: UBERON:0011148 ! submucosal gland
relationship: part_of UBERON:0001972 ! submucosa of esophagus
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0008992
name: chorion frondosum
def: "The part of the chorion where the villi persist, forming the foetal part of the placenta." [BTO:0003677]
synonym: "shaggy chorion" RELATED [BTO:0003677]
xref: BTO:0003677
xref: SCTID:37333001
is_a: UBERON:0000478 {source="BTO"} ! extraembryonic structure
relationship: part_of UBERON:0003124 {source="BTO"} ! chorion
[Term]
id: UBERON:0008993
name: habenular nucleus
def: "The gray matter of the habenula, composed of a small-celled medial and a larger-celled lateral habenular nucleus; both nuclei receive fibres from basal forebrain regions (septum, basal nucleus, lateral preoptic nucleus); the lateral habenular nucleus receives an additional projection from the medial segment of the globus pallidus. Both nuclei project by way of the retroflex fasciculus to the interpeduncular nucleus and a medial zone of the midbrain tegmentum." [BTO:0003685]
synonym: "ganglion habenulae" RELATED [BTO:0003685]
synonym: "nucleus habenulae" RELATED [BTO:0003685]
xref: BTO:0003685
xref: EHDAA2:0004710
xref: SCTID:279303009
is_a: UBERON:0000445 {source="BTO"} ! habenular trigone
relationship: part_of UBERON:0001904 {source="BTO"} ! habenula
[Term]
id: UBERON:0008994
name: glandular stomach
def: "Stomach found in horses; includes cardiac, proper gastric and pyloric glandular zones." [BTO:0003791]
subset: organ_slim
synonym: "stomachus glandularis" RELATED [BTO:0003791]
xref: BTO:0003791
xref: ncithesaurus:Glandular_Stomach
xref: SCTID:27633001
is_a: UBERON:0000945 {source="BTO"} ! stomach
[Term]
id: UBERON:0008995
name: cerebellar nucleus
def: "Four accumulations of gray substance embedded in the white substance of the cerebellum, comprising the nucleus dentatus, nucleus emboliformis, nucleus globosus, and nucleus fastigii." [BTO:0003835]
xref: BTO:0003835
xref: SCTID:279220006
is_a: UBERON:0002946 ! regional part of cerebellum
relationship: part_of UBERON:0002037 {source="BTO"} ! cerebellum
[Term]
id: UBERON:0008996
name: nucleus dentatus
xref: BTO:0003836
xref: SCTID:279221005
is_a: UBERON:0000073 {source="BTO"} ! regional part of nervous system
[Term]
id: UBERON:0008997
name: nucleus fastigii
xref: BTO:0003839
xref: SCTID:279224002
is_a: UBERON:0000073 {source="BTO"} ! regional part of nervous system
[Term]
id: UBERON:0008998
name: cerebrovascular system
def: "System pertaining to blood vessels in the brain." [BTO:0003840]
xref: BTO:0003840
xref: SCTID:362029003
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0007798 {source="BTO"} ! vascular system
[Term]
id: UBERON:0008999
name: hoof lamina
def: "The tissues which attach the third phalanx to the hoof wall." [BTO:0003997]
synonym: "hoof laminae" RELATED [BTO:0003997]
xref: BTO:0003997
xref: SCTID:370743008
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0008963 {source="BTO"} ! hoof
[Term]
id: UBERON:0009000
name: ischial spine
def: "A bony process projecting backward and medialward from the posterior border of the ischium." [BTO:0004149]
xref: BTO:0004149
xref: FMA:17028
xref: SCTID:18074002
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001130 {source="BTO"} ! vertebral column
[Term]
id: UBERON:0009002
name: placental membrane
def: "The membrane separating the fetal from the maternal blood in the placenta; sometimes inappropriately called the placental barrier." [BTO:0004196]
synonym: "placental barrier" RELATED [BTO:0004196]
xref: BTO:0004196
xref: ncithesaurus:Placental_Membrane
xref: SCTID:256591004
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000478 {source="BTO"} ! extraembryonic structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001987 {source="BTO"} ! placenta
[Term]
id: UBERON:0009005
name: femorotibial joint
def: "One of the two primary bendings of a typical leg, pertains to the femur and the tibia." [BTO:0004396]
comment: Editor notes: proposed OWL definition: skeletal join that connects ONLY tibia and femur
synonym: "femoratibial joint" EXACT []
synonym: "knee" RELATED []
synonym: "tibiofemoral joint" EXACT [FMA:43571]
xref: BTO:0004396
xref: FMA:43571
xref: SCTID:182203004
is_a: UBERON:0004174 ! leg joint
is_a: UBERON:0011139 {source="FMA"} ! synovial limb joint
relationship: connects UBERON:0000979 ! tibia
relationship: connects UBERON:0000981 ! femur
relationship: part_of UBERON:0001485 ! knee joint
[Term]
id: UBERON:0009006
name: deep inguinal lymph node
def: "One of several small inconstant lymph nodes, proximal, intermediate and distal deep to the fascia lata and medial to the femoral vein; they receive lymph from the deep structures of the lower limb, from the glans penis and from superficial inguinal nodes; efferents pass to the external iliac nodes." [BTO:0004548]
synonym: "nodi lymphatici inguinales profundi" RELATED [BTO:0004548]
xref: BTO:0004548
xref: FMA:44225
xref: SCTID:65266007
is_a: UBERON:0000029 {source="BTO"} ! lymph node
[Term]
id: UBERON:0009007
name: superficial inguinal lymph node
def: "A group of 12-20 lymph nodes that lie in the subcutaneous tissue below the inguinal ligament and along the terminal part of the great saphenous vein; they drain the skin and subcutaneous tissue of the lower abdominal wall, perineum, buttocks, external genitalia, and lower limbs." [BTO:0004549]
xref: BTO:0004549
xref: FMA:5036
xref: SCTID:113340006
is_a: UBERON:0000029 {source="BTO"} ! lymph node
[Term]
id: UBERON:0009009
name: carotid sinus nerve
def: "Carotid branch of glossopharyngeal nerve." [BTO:0004978]
xref: BTO:0004978
xref: FMA:53488
xref: SCTID:50624003
is_a: UBERON:0001021 {source="FMA"} ! nerve
relationship: part_of UBERON:0001649 {source="BTO"} ! glossopharyngeal nerve
[Term]
id: UBERON:0009010
name: periurethral tissue
def: "Tissue around the urethra." [BTO:0005081]
xref: BTO:0005081
xref: SCTID:256880003
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0009013
name: white fibrocartilage
xref: MA:0000486
xref: SCTID:3008003
is_a: UBERON:0001995 {source="UBERON"} ! fibrocartilage
[Term]
id: UBERON:0009014
name: lower back skin
subset: organ_slim
xref: MA:0000504
xref: SCTID:286601005
is_a: UBERON:0001068 ! skin of back
is_a: UBERON:0003836 {source="MA"} ! abdominal segment skin
relationship: part_of UBERON:0005462
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0005462 ! lower back
relationship: part_of UBERON:0005462 ! lower back
[Term]
id: UBERON:0009015
name: upper back skin
xref: MA:0000510
xref: SCTID:304890003
is_a: UBERON:0001068 ! skin of back
is_a: UBERON:0001418 {source="MA"} ! skin of thorax
relationship: part_of UBERON:0008231
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0008231 ! dorsal thoracic segment of trunk
relationship: part_of UBERON:0008231 ! dorsal thoracic segment of trunk
[Term]
id: UBERON:0009016
name: ciliary stroma
xref: MA:0001239
xref: SCTID:280868008
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body
[Term]
id: UBERON:0009020
name: left uterine horn
xref: MA:0001727
xref: SCTID:245482004
is_a: UBERON:0002247 ! uterine horn
relationship: in_left_side_of UBERON:0000995
intersection_of: UBERON:0002247 ! uterine horn
intersection_of: in_left_side_of UBERON:0000995 ! uterus
relationship: in_left_side_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0009022
name: right uterine horn
xref: MA:0001728
xref: SCTID:245481006
is_a: UBERON:0002247 ! uterine horn
relationship: in_right_side_of UBERON:0000995
intersection_of: UBERON:0002247 ! uterine horn
intersection_of: in_right_side_of UBERON:0000995 ! uterus
relationship: in_right_side_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0009024
name: adrenal gland X zone
def: "A wide juxta-medullary layer of cells in the adrenal glands of young mature virgin female mice." [http://www.jstor.org/pss/82802]
synonym: "juvenile zone" RELATED [MA:0001888]
xref: MA:0001888
xref: SCTID:24306004
is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone
relationship: part_of UBERON:0001235 {source="MA"} ! adrenal cortex
relationship: part_of UBERON:0003100 ! female organism
[Term]
id: UBERON:0009025
name: gastroepiploic artery
def: "Abdominal artery that follows the curvature of the stomach. The right gasteroepiploic artery is frequently used in coronary artery bypass grafting, myocardial revascularization, and other vascular reconstruction." [MESH:A.07.231.114.379]
subset: grouping_class
xref: MA:0001962
xref: MESH:A.07.231.114.379
xref: ncithesaurus:Gastroepiploic_Artery
xref: SCTID:261401008
is_a: UBERON:0001637 {source="MA"} ! artery
[Term]
id: UBERON:0009026
name: iliac circumflex artery
xref: MA:0001975
xref: ncithesaurus:Circumflex_Iliac_Artery
xref: SCTID:244327004
is_a: UBERON:0001637 {source="MA"} ! artery
[Term]
id: UBERON:0009027
name: vesical artery
xref: MA:0002078
xref: SCTID:244307000
is_a: UBERON:0001637 {source="MA"} ! artery
[Term]
id: UBERON:0009029
name: pudendal vein
xref: MA:0002202
xref: SCTID:395225000
is_a: UBERON:0001638 {source="MA"} ! vein
[Term]
id: UBERON:0009030
name: left pulmonary vein
xref: MA:0002207
xref: ncithesaurus:Left_Pulmonary_Vein
xref: SCTID:304057004
is_a: UBERON:0002016 {source="MA"} ! pulmonary vein
[Term]
id: UBERON:0009032
name: right pulmonary vein
xref: MA:0002208
xref: ncithesaurus:Right_Pulmonary_Vein
xref: SCTID:304056008
is_a: UBERON:0002016 {source="MA"} ! pulmonary vein
[Term]
id: UBERON:0009034
name: stomach region
xref: MA:0002561
xref: SCTID:245415005
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000945
intersection_of: UBERON:0000064 ! organ part
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0009035
name: renal straight tubule
comment: todo - add relationships
xref: MA:0002634
xref: SCTID:245151008
is_a: UBERON:0001231 {source="MA"} ! nephron tubule
[Term]
id: UBERON:0009038
name: sulcus ampullaris
def: "the groove on the external surface of the ampulla of each semicircular duct where the nerve enters the ampullary crest." [http://www.medilexicon.com/medicaldictionary.php?s=ampullary+groove]
synonym: "ampullary groove" EXACT [FMA:74584]
synonym: "ampullary sulcus" EXACT []
xref: FMA:74584
xref: MA:0002835
xref: SCTID:368954006
is_a: UBERON:0006800 {source="FMA"} ! anatomical line
relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla
[Term]
id: UBERON:0009039
name: lymph node germinal center
def: "A germinal center that is located in a lymph node" [CL:tm]
synonym: "germinal center" BROAD [BTO:0003671]
synonym: "lymph node activated zone" RELATED []
synonym: "lymph node central zone" RELATED []
synonym: "lymph node light zone" RELATED []
synonym: "lymph node nodule" RELATED []
xref: BTO:0003671
xref: MA:0002989
xref: ncithesaurus:Lymph_Node_Germinal_Center
xref: SCTID:327147000
is_a: UBERON:0010754 ! germinal center
relationship: part_of UBERON:0000029
intersection_of: UBERON:0010754 ! germinal center
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0010753 {source="MA"} ! lymph node secondary follicle
[Term]
id: UBERON:0009040
name: deep circumflex iliac artery
def: "The deep circumflex iliac artery (or deep iliac circumflex artery) is an artery in the pelvis that travels along the iliac crest of the pelvic bone." [Wikipedia:Deep_circumflex_iliac_artery]
synonym: "arteria circumflexa ilium profunda" EXACT [Wikipedia:Deep_circumflex_iliac_artery]
synonym: "arteria circumflexa ilium profunda" RELATED LATIN [Wikipedia:Deep_circumflex_iliac_artery]
synonym: "deep iliac circumflex" RELATED [Wikipedia:Deep_circumflex_iliac_artery]
synonym: "deep iliac circumflex artery" RELATED [Wikipedia:Deep_circumflex_iliac_artery]
xref: FMA:20687
xref: http://upload.wikimedia.org/wikipedia/commons/0/07/Gray586.png
xref: http://upload.wikimedia.org/wikipedia/commons/7/74/Gray586.png
xref: ncithesaurus:Deep_Circumflex_Iliac_Artery
xref: SCTID:181353005
is_a: UBERON:0003520 ! pelvis blood vessel
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0009026 ! iliac circumflex artery
relationship: branch_of UBERON:0001308 {source="FMA"} ! external iliac artery
relationship: part_of UBERON:0001308 {source="FMA"} ! external iliac artery
[Term]
id: UBERON:0009041
name: superficial circumflex iliac artery
def: "The superficial iliac circumflex artery (or superficial circumflex iliac), the smallest of the cutaneous branches of the femoral artery, arises close to the superficial epigastric artery, and, piercing the fascia lata, runs lateralward, parallel with the inguinal ligament, as far as the crest of the ilium. It divides into branches which supply the integument of the groin, the superficial fascia, and the superficial subinguinal lymph glands, anastomosing with the deep iliac circumflex, the superior gluteal and lateral femoral circumflex arteries." [Wikipedia:Superficial_circumflex_iliac_artery]
synonym: "arteria circumflexa ilium superficialis" EXACT [Wikipedia:Superficial_iliac_circumflex_artery]
synonym: "iliac circumflex artery" RELATED [Wikipedia:Superficial_iliac_circumflex_artery]
synonym: "superficial circumflex iliac artery" RELATED [Wikipedia:Superficial_iliac_circumflex_artery]
xref: FMA:20737
xref: http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray548.png
xref: ncithesaurus:Superficial_Circumflex_Iliac_Artery
is_a: UBERON:0003520 ! pelvis blood vessel
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0009026 ! iliac circumflex artery
relationship: branch_of UBERON:0002060 {source="FMA"} ! femoral artery
relationship: part_of UBERON:0001308 {source="FMA"} ! external iliac artery
relationship: part_of UBERON:0002060 {source="FMA"} ! femoral artery
[Term]
id: UBERON:0009042
name: prostatic venous plexus
def: "The prostatic veins form a well-marked prostatic plexus which lies partly in the fascial sheath of the prostate and partly between the sheath and the prostatic capsule. It communicates with the pudendal and vesical plexuses." [Wikipedia:Prostatic_venous_plexus]
synonym: "plexus venosus prostaticus" RELATED LATIN [Wikipedia:Prostatic_venous_plexus]
synonym: "pudendal venous plexus" RELATED [FMA:29711]
xref: FMA:29711
xref: http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png
xref: SCTID:303052003
is_a: UBERON:0001593 {source="FMA"} ! venous plexus
[Term]
id: UBERON:0009044
name: pudendal venous plexus
def: "The pudendal plexus (vesicoprostatic plexus) lies behind the arcuate pubic ligament and the lower part of the pubic symphysis, and in front of the bladder and prostate. Its chief tributary is the deep dorsal vein of the penis, but it also receives branches from the front of the bladder and prostate. It communicates with the vesical plexus and with the internal pudendal vein and drains into the vesical and hypogastric veins." [Wikipedia:Pudendal_plexus_(veins)]
xref: SCTID:65326006
is_a: UBERON:0001593 ! venous plexus
[Term]
id: UBERON:0009046
name: inferior external pudendal vein
xref: MA:0002203
is_a: UBERON:0009029 {source="MA"} ! pudendal vein
[Term]
id: UBERON:0009047
name: superior external pudendal vein
xref: MA:0002204
is_a: UBERON:0009029 {source="MA"} ! pudendal vein
[Term]
id: UBERON:0009048
name: deep external pudendal vein
xref: FMA:44488
is_a: UBERON:0009029 ! pudendal vein
[Term]
id: UBERON:0009049
name: superficial external pudendal vein
xref: FMA:21377
is_a: UBERON:0009029 ! pudendal vein
[Term]
id: UBERON:0009050
name: nucleus of solitary tract
def: "." [Wikipedia:Solitary_nucleus]
synonym: "''nucleus tractus solitarii medullae oblongatae" RELATED LATIN [Wikipedia:Solitary_nucleus]
synonym: "nucleus of the tractus solitarius" EXACT [NIF_GrossAnatomy:birnlex_1429]
synonym: "nucleus of tractus solitarius" EXACT [Wikipedia:Solitary_nucleus]
synonym: "solitary nucleus" EXACT []
synonym: "solitary tract nucleus" EXACT []
xref: ABA:NTS
xref: BM:Me-NS
xref: BTO:0003963
xref: EV:0100288
xref: FMA:256691
xref: GAID:593
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Gray696.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0001052
xref: MESH:A.08.186.211.132.810.406.750
xref: ncithesaurus:Nucleus_of_the_Solitary_Tract
xref: ncithesaurus:Solitary_Nucleus
xref: NIF_GrossAnatomy:birnlex_1429
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0002126
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0002126 ! solitary tract nuclear complex
relationship: part_of UBERON:0002126 ! solitary tract nuclear complex
[Term]
id: UBERON:0009051
name: gelatinous nucleus of solitary tract
xref: ABA:NTSge
xref: FMA:77463
is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract
[Term]
id: UBERON:0009052
name: medial nucleus of solitary tract
xref: ABA:NTSm
xref: FMA:229585
is_a: UBERON:0009050 {source="FMA"} ! nucleus of solitary tract
[Term]
id: UBERON:0009053
name: dorsal nucleus of trapezoid body
synonym: "dorsal nucleus of trapezoid body" EXACT [NIF_GrossAnatomy:birnlex_2575]
xref: NIF_GrossAnatomy:birnlex_2575
xref: SCTID:369021001
is_a: UBERON:0007633 ! nucleus of trapezoid body
[Term]
id: UBERON:0009054
name: open circulatory system
comment: The Open Circulatory System is a system in which fluid (called hemolymph) in a cavity called the hemocoel bathes the organs directly with oxygen and nutrients and there is no distinction between blood and interstitial fluid; this combined fluid is called hemolymph or haemolymph
is_a: UBERON:0001009 {source="GO"} ! circulatory system
[Term]
id: UBERON:0009055
name: closed circulatory system
comment: Editor notes: consider merging with cardiovascular system? Taxon notes: The circulatory systems of all vertebrates, as well as of annelids (for example, earthworms) and cephalopods (squid and octopus) are closed, just as in humans. Still, the systems of fish, amphibians, reptiles, and birds show various stages of the evolution of the circulatory system
is_a: UBERON:0001009 {source="GO"} ! circulatory system
[Term]
id: UBERON:0009056
name: two-pass circulatory system
def: "A closed circulatory system in which blood passes twice through the heart to supply the body once." [GO:0035905, Wikipedia:Double_circulatory_system]
is_a: UBERON:0009055 ! closed circulatory system
[Term]
id: UBERON:0009057
name: one-pass circulatory system
def: "A closed circulatory system in which blood passes once through the heart to supply the body once." [GO:0035907]
is_a: UBERON:0009055 ! closed circulatory system
[Term]
id: UBERON:0009058
name: faveolus
def: "A bellows-shaped respiratory unit extending from the outer wall of the lung into a central air space." [PMID:12869615]
comment: Dunker (1978) coined the terms ediculae or faveoli to describe the unit structure of the reptilian parenchymal, which are analogous to mammalian alveoli, but are up to 1,000 times larger than alveoli of similar sized mammals[PMID:12625309]
synonym: "edicula" RELATED SENSU [PMID:12625309]
synonym: "faveoli" RELATED PLURAL []
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0009060
name: air sac
def: "any of the membranous air-filled extensions of the lungs of birds, which increase the efficiency of gaseous exchange in the lungs" [http://www.thefreedictionary.com/air+sac, Wikipedia:Bird_anatomy#Respiratory_system]
comment: Three distinct sets of organs perform respiration—the anterior air sacs (interclavicular, cervicals, and anterior thoracics), the lungs, and the posterior air sacs (posterior thoracics and abdominals). The posterior and anterior air sacs, typically nine, expand during inhalation. Air enters the bird via the trachea. Half of the inhaled air enters the posterior air sacs, the other half passes through the lungs and into the anterior air sacs. Air from the anterior air sacs empties directly into the trachea and out the bird's mouth or nares. The posterior air sacs empty their air into the lungs. Air passing through the lungs as the bird exhales is expelled via the trachea. Some taxonomic groups (Passeriformes) possess 7 air sacs, as the clavicular air sacs may interconnect or be fused with the cranial thoracic air sacs[WP]
synonym: "psotcranial air sac" RELATED [UBERON:cjm]
synonym: "sacci pneumatici" EXACT LATIN []
xref: http://upload.wikimedia.org/wikipedia/commons/f/f2/BirdRespiration.svg
xref: MESH:A.13.048
xref: SCTID:49081009
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0009061
name: anterior air sac
is_a: UBERON:0009060 ! air sac
[Term]
id: UBERON:0009062
name: posterior air sac
comment: Half of the inhaled air enters the posterior air sacs. The posterior air sacs empty their air into the lungs.
is_a: UBERON:0009060 ! air sac
[Term]
id: UBERON:0009063
name: interclavicular air sac
is_a: UBERON:0009061 ! anterior air sac
[Term]
id: UBERON:0009064
name: cervical air sac
xref: SCTID:62426003
is_a: UBERON:0009061 ! anterior air sac
[Term]
id: UBERON:0009065
name: anterior thoracic air sac
is_a: UBERON:0009061 ! anterior air sac
[Term]
id: UBERON:0009066
name: posterior thoracic air sac
xref: SCTID:10576005
is_a: UBERON:0009062 ! posterior air sac
[Term]
id: UBERON:0009067
name: abdominal air sac
xref: SCTID:43701009
is_a: UBERON:0009062 ! posterior air sac
[Term]
id: UBERON:0009071
name: mesobronchus
subset: organ_slim
synonym: "mesobronchi" RELATED PLURAL []
is_a: UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0009072
name: ventrobronchus
subset: organ_slim
is_a: UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0009073
name: dorsobronchus
subset: organ_slim
is_a: UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0009074
name: syrinx organ
def: "vocal organ of birds, located at the base of a trachea" [Wikipedia:Syrinx_(bird_anatomy)]
subset: organ_slim
synonym: "avian vocal organ" RELATED []
synonym: "syrinx" RELATED []
xref: http://upload.wikimedia.org/wikipedia/commons/8/87/Syrinx.jpg
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0009075
name: membrana tympaniformis
synonym: "wall of syrinx" EXACT [Wikipedia:Syrinx_(bird_anatomy)]
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0009074 ! syrinx organ
[Term]
id: UBERON:0009076
name: membrana tympaniformis lateralis
synonym: "lateral wall of syrinx" EXACT []
is_a: UBERON:0009075 ! membrana tympaniformis
[Term]
id: UBERON:0009077
name: membrana tympaniformis medialis
synonym: "medial wall of syrinx" EXACT []
is_a: UBERON:0009075 ! membrana tympaniformis
[Term]
id: UBERON:0009078
name: pessulus
def: "A delicate bar of cartilage connecting the dorsal and ventral extremities of the first pair of bronchial cartilages in the syrinx of birds" [http://www.encyclo.co.uk/webster/P/64]
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005178 ! thoracic cavity organ
is_a: UBERON:0007844 ! cartilaginous element
relationship: part_of UBERON:0009074 ! syrinx organ
[Term]
id: UBERON:0009089
name: inner medulla vasa recta descending limb
xref: KUPO:0001003
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta
[Term]
id: UBERON:0009090
name: outer medulla vasa recta descending limb
xref: KUPO:0001004
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta
[Term]
id: UBERON:0009091
name: vasa recta ascending limb
xref: KUPO:0001005
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta
[Term]
id: UBERON:0009092
name: inner medulla vasa recta ascending limb
xref: KUPO:0001006
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta
[Term]
id: UBERON:0009093
name: outer medulla vasa recta ascending limb
xref: KUPO:0001007
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta
[Term]
id: UBERON:0009095
name: tip of renal papilla
synonym: "papillary tip" EXACT [KUPO:0001009]
synonym: "papillary tips" EXACT PLURAL [KUPO:0001009]
xref: KUPO:0001009
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001228 {source="KUPO"} ! renal papilla
[Term]
id: UBERON:0009096
name: gravid stage
def: "The adult stage at which the organism contains a developing embryo, fetus, or unborn offspring within the body." [BTO:0004733]
synonym: "gravid" RELATED [BTO:0004733]
synonym: "pregnant adult stage" RELATED [BTO:0004733]
synonym: "pregnant stage" RELATED [BTO:0004733]
xref: BTO:0004733
is_a: UBERON:0000113 {source="BTO"} ! post-juvenile adult stage
[Term]
id: UBERON:0009097
name: gravid organism
def: "An organism containing a developing embryo, fetus, or unborn offspring within the body." [BTO:0004733]
synonym: "pregnant organism" RELATED []
is_a: UBERON:0007023 ! adult organism
relationship: has_part UBERON:0000922
intersection_of: UBERON:0007023 ! adult organism
intersection_of: has_part UBERON:0000922 ! embryo
relationship: existence_ends_with UBERON:0009096 ! gravid stage
relationship: existence_starts_with UBERON:0009096 ! gravid stage
relationship: has_part UBERON:0000922 ! embryo
[Term]
id: UBERON:0009098
name: gravid uterus
def: "The uterus in pregnancy" [http://medical-dictionary.thefreedictionary.com/gravid+uterus]
xref: ncithesaurus:Gravid_Uterus
xref: ncithesaurus:Pregnant_Uterus
xref: SCTID:362253003
is_a: UBERON:0000995 ! uterus
relationship: contains UBERON:0000922
intersection_of: UBERON:0000995 ! uterus
intersection_of: contains UBERON:0000922 ! embryo
relationship: contains UBERON:0000922 ! embryo
relationship: part_of UBERON:0009097 ! gravid organism
[Term]
id: UBERON:0009099
name: typhlosole
def: "an invagination of the intestinal epithelium that emanates from a lamina of mesenchymal cells located between the dorsal aorta and the upper intestine and constitute one of the two principal hematopoietic organs at the ammocoete stage of development." [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/, Wikipedia:Typhlosole]
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0001277 ! intestinal epithelium
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0009101 ! ammocoete
[Term]
id: UBERON:0009100
name: nephric fold
comment: Lymphocytes are also abundant in the lamprey kidney, where large populations are intermingled around the renal tubules
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0009101 ! ammocoete
[Term]
id: UBERON:0009101
name: ammocoete
def: "lamprey at larval stage" []
is_a: UBERON:0002548 ! larva
[Term]
id: UBERON:0009102
name: supraneural body
def: "One of the primary immunological organs of the adult lamprey is the supraneural body. This structure lies dorsal to spinal column and becomes heavily populated with lymphocytes following after immune challenge [13–15]. The supraneural body from hematopoietically stimulated lampreys appears to be histologically-similar to ‘bone marrow’ in higher vertebrates and contains all blood cell lineages and their precursors, including lymphocytes at all stages of maturity[16]." [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2823822/#R16]
subset: organ_slim
synonym: "dorsal fat body" EXACT [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/]
synonym: "pro-vertebral arch" EXACT [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2093943/]
is_a: UBERON:0004177 ! hemopoietic organ
is_a: UBERON:0005057 ! immune organ
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0009113
name: thymic region
is_a: UBERON:0000475 ! organism subdivision
relationship: overlaps UBERON:0000974 {source="EHDAA2-modified"} ! neck
relationship: overlaps UBERON:0002224 {source="MA-modified"} ! thoracic cavity
relationship: overlaps UBERON:0003728 ! mediastinum
relationship: part_of UBERON:0000153 ! anterior region of body
[Term]
id: UBERON:0009114
name: cervical thymus
def: "A mature thymus that is entirely part of the cervical region." [UBERON:cjm]
comment: A cervical thymus is a pathological structure in a human - it can form during the migration of the thymus to its location in the mediastinum. Some mice have a cervical thymus. There are examples of cervical thymi in marsupials and prosimians[ISBN-10:0781714125]
subset: organ_slim
is_a: UBERON:0002370 ! thymus
relationship: part_of UBERON:0000974
intersection_of: UBERON:0002370 ! thymus
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0009115
name: thoracic thymus
def: "A mature thymus that is entirely part of thoracic region." [UBERON:cjm]
subset: organ_slim
is_a: UBERON:0002370 ! thymus
is_a: UBERON:0005178 ! thoracic cavity organ
relationship: part_of UBERON:0002224
intersection_of: UBERON:0002370 ! thymus
intersection_of: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0009116
name: thymoid
def: "A thymus-like lympho-epithelial structures, in the tips of the gill filaments and the neighbouring secondary lamellae (both within the gill basket) of lamprey larvae." [PMID:21293377]
comment: Genes: FOXN1
subset: organ_slim
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003295 ! pharyngeal gland
is_a: UBERON:0004177 ! hemopoietic organ
is_a: UBERON:0005057 ! immune organ
is_a: UBERON:0005058 ! hemolymphoid system gland
is_a: UBERON:0006925 ! digestive gland
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002405 ! immune system
relationship: part_of UBERON:0009101 ! ammocoete
relationship: part_of UBERON:0009119 ! branchial basket
[Term]
id: UBERON:0009117
name: indifferent gonad
def: "A gonad prior to differentiating into a definitive testis or ovary." [http://www.medterms.com/script/main/art.asp?articlekey=8981]
comment: typically part of the embryo - however, in male tammar wallabies the gonads are indifferent at the neonatal stage[8827321]
subset: organ_slim
xref: EHDAA2:0000716
xref: ncithesaurus:Indifferent_Gonad
is_a: UBERON:0000991 ! gonad
relationship: part_of UBERON:0009196 ! indifferent external genitalia
[Term]
id: UBERON:0009118
name: marsupial pouch
synonym: "pouch" BROAD []
is_a: UBERON:0005156 ! reproductive structure
[Term]
id: UBERON:0009119
name: branchial basket
def: "the network-like cartilaginous skeleton of the gill region of Petromyzontiformes and Holocephali" [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm]
subset: cyclostome_subset
synonym: "gill basket" EXACT [http://www.briancoad.com/dictionary/DicPics/branchial%20basket.htm]
xref: http://dev.duit.uwa.edu.au/zoology/media/lamp/E19.jpg
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: develops_from UBERON:0002342 {source="PMID:19924811"} ! neural crest
relationship: has_part UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0001042 ! chordate pharynx
[Term]
id: UBERON:0009120
name: gill filament
def: "Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure." [http:www.briancoad.com/Dictionary/G.htm, ZFIN:ZDB-PUB-961014-576]
synonym: "gill filaments" EXACT PLURAL [ZFA:0000667]
xref: BTO:0002150
xref: TAO:0000667
xref: ZFA:0000667
property_value: UBPROP:0000001 "Branched region of the gill where respiratory exchange takes place. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0000479 {source="ZFA"} ! tissue
relationship: part_of UBERON:0002535 {source="ZFA"} ! gill
[Term]
id: UBERON:0009121
name: vomeronasal nerve
def: "Nerve carrying fibers from the vomeronasal organ to the accessory olfactory bulb[AAO]. originates in the olfactory epithelial cells of Jacobson's organ, and that passes through the submucous tissue of the nasal septum and the cribriform plate of the ethmoid bone to the olfactory bulb[BTO]." [AAO:DSM, BTO:0001351]
comment: in the human this disappears before birth
xref: AAO:0010608
xref: BTO:0001351
xref: NIF_GrossAnatomy:nlx_anat_1005018
property_value: UBPROP:0000001 "Nerve carrying fibers from the vomeronasal organ to the accessory olfactory bulb.[AAO]" xsd:string
is_a: UBERON:0001785 {source="NIF_GrossAnatomy"} ! cranial nerve
relationship: develops_from UBERON:0003050 {source="ISBN10:0471888893"} ! olfactory placode
relationship: overlaps UBERON:0003367 {source="Wikipedia"} ! epithelium of vomeronasal organ
[Term]
id: UBERON:0009122
name: adenohypophyseal placode
def: "The adenohypophyseal placode forms the anterior lobe of the pituitary gland and gives rise to the endocrine secretory cells of the pituitary" [http://www.ncbi.nlm.nih.gov/books/NBK53175/]
comment: Editor notes: consider adding more detailed spatial placement - e.g. oral ectoderm and/or rostal ectoderm. Addtional notes: Fate-mapping studies in amphibian, chick and mouse embryos (Eagleson et al., 1986; 1995; Couly and Le Douarin, 1985; Cobos et al., 2001; Osumi-Yamachita et al., 1994; Kawamura et al., 2002) have shown that the cells contributing to the adenohypophysis develop at the midline of the anterior neural ridge, which delineates the rostral boundary of the neural plate, a region devoid of neural crest. The anterior neural ridge also gives rise to the olfactory placodes and some forebrain tissues including the olfactory bulbs (reviewed in Papalopulu, 1995). Ablation of this region in chick embryos at the 2-4 somite stage confirmed these lineage analyses as it prevented formation of Rathke’s pouch and any further pituitary development (elAmraoui and Dubois, 1993). Upon head folding, the oral ectoderm cells of the adenohypophyseal placode invaginate towards the prospective ventral diencephalon to form Rathke’s pouch, the anlage of the adenohypophysis. Rathke’s pouch starts as an invagination of the oral ectoderm in response to inductive signals from the prospective diencephalon. The region of the diencephalon above the pouch is known as the infundibulum and forms the posterior lobe of the pituitary or neurohypohysis (Figure 3). While in most basal fish and tetrapods the adenohypophyseal anlagen invaginates to form Rathke’s pouch, in teleost fish the adenohypophyseal placode does not invaginate but rather maintains its initial organization forming a solid structure in the head (reviewed in Pogoda and Hammerschmidt; 2009)
synonym: "pituitary placode" RELATED [ZFA:0001198]
xref: TAO:0001198
xref: XAO:0004208
xref: ZFA:0001198
is_a: UBERON:0002546 {source="NBK53175", notes="non-neurogenic"} ! cranial placode
relationship: develops_from UBERON:0005497 {source="ZFA"} ! non-neural ectoderm
[Term]
id: UBERON:0009123
name: otic cup
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003069 {source="NBK53175"} ! otic placode
[Term]
id: UBERON:0009124
name: geniculate placode
def: "Rostralmost epibranchial placode. Associated with 1st branchial cleft." [NBK:NBK53175]
synonym: "facial epibranchial placode" EXACT [XAO:0004211]
synonym: "facial placode" EXACT [ZFA:0001295]
xref: TAO:0001295
xref: XAO:0004211
xref: ZFA:0001295
is_a: UBERON:0003078 {source="ZFA"} ! epibranchial placode
[Term]
id: UBERON:0009125
name: petrosal placode
def: "Epibranchial placode between geniculate and nodose. Associated with 2nd branchial cleft." [NBK:NBK53175]
synonym: "glossopharyngeal epibranchial placode" EXACT [XAO:0004212]
synonym: "glossopharyngeal placode" EXACT [ZFA:0001296]
xref: TAO:0001296
xref: XAO:0004212
xref: ZFA:0001296
is_a: UBERON:0003078 {source="ZFA"} ! epibranchial placode
[Term]
id: UBERON:0009126
name: nodosal placode
def: "Caudalmost epibranchial placode. Associated with 3rd branchial cleft." [NBK:NBK53175]
synonym: "nodose placode" EXACT [XAO:0004213]
synonym: "vagal epibranchial placode" EXACT [XAO:0004213]
xref: XAO:0004213
is_a: UBERON:0003078 {source="NBK53175"} ! epibranchial placode
[Term]
id: UBERON:0009127
name: epibranchial ganglion
def: "Cranial ganglion which develops from an epibranchial placode." [PMID:20133851, ZFIN:curator]
comment: Epibranchial ganglia orchestrate the development of the cranial neurogenic crest
synonym: "epibranchial ganglia" EXACT PLURAL [ZFA:0001555]
xref: TAO:0001555
xref: ZFA:0001555
xref: ZFIN:ZDB-ANAT-070928-157
is_a: UBERON:0001714 {source="ZFA"} ! cranial ganglion
relationship: develops_from UBERON:0003078 {source="NBK53175"} ! epibranchial placode
[Term]
id: UBERON:0009128
name: lateral line placode
synonym: "lateral line placodes" RELATED PLURAL [XAO:0000440]
xref: AAO:0010718
xref: XAO:0000440
property_value: UBPROP:0000001 "Specialized series of dorsolateral ectodermal placodes.[AAO]" xsd:string
is_a: UBERON:0009955 {source="NBK53175"} ! neurogenic placode
[Term]
id: UBERON:0009129
name: right atrium endocardium
synonym: "endocardium of right atrium" EXACT [FMA:7281]
xref: EHDAA2:0000274
xref: FMA:7281
xref: SCTID:3194006
xref: VHOG:0001228
is_a: UBERON:0000487 ! simple squamous epithelium
is_a: UBERON:0002166 ! endocardium of atrium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002078
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0002078 ! right atrium
relationship: develops_from UBERON:0005092 {source="EHDAA2"} ! right horn of sinus venosus
relationship: part_of UBERON:0002078 ! right atrium
relationship: part_of UBERON:0006218 {source="EHDAA2"} ! common atrial chamber
[Term]
id: UBERON:0009130
name: dorsal meso-duodenum
xref: RETIRED_EHDAA2:0000411
xref: SCTID:361433003
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002050 {source="EHDAA2"} ! embryonic structure
relationship: part_of UBERON:0005712 {source="EHDAA2"} ! midgut duodenum mesentery
[Term]
id: UBERON:0009131
name: midbrain vesicle
comment: Semantics of EHDAA2 class unclear - part of midbrain
is_obsolete: true
[Term]
id: UBERON:0009132
name: peroneus
def: "a group of three muscles fibularis (peronæus) longus, brevis, and tertius originating on the fibula and inserting on the metatarsals" [Wikipedia:Fibularis_muscles]
synonym: "fibularis" EXACT []
synonym: "fibularis muscle" EXACT []
synonym: "peroneal muscle" EXACT []
synonym: "peroneal muscle group" EXACT []
synonym: "peroneal muscles" EXACT []
synonym: "peroneus muscle" EXACT []
xref: EHDAA2:0001450
xref: EHDAA:8297
xref: SCTID:181694005
is_a: UBERON:0002036 {source="EHDAA2"} ! striated muscle tissue
is_a: UBERON:0004256 ! hindlimb zeugopod muscle
relationship: part_of UBERON:0003823 {source="EHDAA2"} ! hindlimb zeugopod
[Term]
id: UBERON:0009133
name: pleuroperitoneal membrane
alt_id: UBERON:0009146
def: "A fold of tissue which extends into the peritoneal cavity of the developing embryo and participates in the separation of the pleural and peritoneal cavities." [http://medical-dictionary.thefreedictionary.com/pleuroperitoneal+membrane, Wikipedia:Pleuroperitoneal]
synonym: "pleuroperitoneal membranes" EXACT PLURAL [EHDAA2:0001483]
xref: EHDAA2:0001483
xref: EMAPA:17709
xref: ncithesaurus:Pleuroperitoneal_Membrane
xref: SCTID:361429005
xref: VHOG:0000757
is_a: UBERON:0005291 ! embryonic tissue
relationship: adjacent_to UBERON:0001179 ! peritoneal cavity
relationship: adjacent_to UBERON:0002402 ! pleural cavity
[Term]
id: UBERON:0009138
name: right common common cardinal vein
comment: Taxon notes: only a vestige of the right duct in the adult hagfish (21)[PMID:20959416, S1]
synonym: "common cardinal vein right" EXACT [EHDAA2:0004535]
xref: EHDAA2:0004535
xref: FMA:70310
xref: SCTID:361507009
is_a: UBERON:0002064 {source="FMA"} ! common cardinal vein
relationship: part_of UBERON:0004344 {source="EHDAA2"} ! cardinal vein
[Term]
id: UBERON:0009139
name: right posterior cardinal vein
xref: EHDAA2:0004536
xref: SCTID:361505001
is_a: UBERON:0001638 {source="EHDAA2"} ! vein
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0004344 {source="EHDAA2"} ! cardinal vein
[Term]
id: UBERON:0009140
name: right subcardinal vein
xref: EHDAA2:0004538
xref: SCTID:361452009
is_a: UBERON:0001638 {source="EHDAA2"} ! vein
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0004344 {source="EHDAA2"} ! cardinal vein
[Term]
id: UBERON:0009141
name: craniocervical region vein
synonym: "craniocervical vein" EXACT []
synonym: "head and neck veins" EXACT [EHDAA2:0004542]
synonym: "vein of head and neck" EXACT []
xref: EHDAA2:0004542
xref: SCTID:32945007
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0007811
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0007811 ! craniocervical region
relationship: part_of UBERON:0004581 {source="EHDAA2"} ! systemic venous system
relationship: part_of UBERON:0007811 ! craniocervical region
[Term]
id: UBERON:0009142
name: entire mesenchyme
alt_id: UBERON:0003313
comment: consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm)
xref: EHDAA2:0001113
xref: EHDAA:177
xref: EMAPA:16097
is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure
relationship: has_developmental_contribution_from UBERON:0000926 {source="EHDAA2"} ! mesoderm
[Term]
id: UBERON:0009143
name: esophageal region
synonym: "oesophageal region" EXACT [RETIRED_EHDAA2:0000654]
xref: EMAPA:16700
xref: RETIRED_EHDAA2:0000654
xref: SCTID:245404000
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0001041 {source="EHDAA2"} ! foregut
[Term]
id: UBERON:0009145
name: pharyngeal region
xref: EMAPA:16549
xref: RETIRED_EHDAA2:0001454
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0001041 {source="EHDAA2"} ! foregut
relationship: part_of UBERON:0001557 {source="EHDAA2"} ! upper respiratory tract
[Term]
id: UBERON:0009149
name: foramen primum
def: "opening in the septum primum between the two atria of the embryonic heart." [http://medical-dictionary.thefreedictionary.com/foramen+primum, Wikipedia:Ostium_primum]
synonym: "interatrial foramen primum" EXACT [Wikipedia:Ostium_primum]
synonym: "ostium primum" EXACT [http://medical-dictionary.thefreedictionary.com/foramen+primum]
synonym: "primary interatrial foramen" EXACT [Wikipedia:Ostium_primum]
xref: EHDAA2:0001826
xref: EMAPA:17012
xref: ncithesaurus:Foramen_Primum
xref: SCTID:308852002
xref: VHOG:0001470
is_a: UBERON:0004111 {source="EHDAA2"} ! anatomical conduit
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002085 {source="EHDAA2"} ! interatrial septum
relationship: part_of UBERON:0004154 {source="EHDAA2"} ! septum primum
[Term]
id: UBERON:0009191
name: sphenoid bone pre-cartilage condensation
xref: EHDAA2:0003446
xref: EMAPA:18015
is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: part_of UBERON:0001703 {source="EHDAA2"} ! neurocranium
relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium
[Term]
id: UBERON:0009192
name: basisphenoid pre-cartilage condensation
synonym: "basi-sphenoid pre-cartilage condensation" EXACT [EHDAA2:0003447]
xref: EHDAA2:0003447
xref: EMAPA:18013
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
is_a: UBERON:0006904 ! head mesenchyme from mesoderm
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: develops_from UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest
relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium
[Term]
id: UBERON:0009193
name: sphenoid bone cartilage condensation
xref: EHDAA2:0001888
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0009191 ! sphenoid bone pre-cartilage condensation
relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium
[Term]
id: UBERON:0009194
name: basisphenoid cartilage condenstion
xref: EHDAA2:0000166
xref: VHOG:0001338
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
is_a: UBERON:0006904 ! head mesenchyme from mesoderm
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: develops_from UBERON:0009192 {source="EHDAA2"} ! basisphenoid pre-cartilage condensation
relationship: part_of UBERON:0009193 {source="EHDAA2"} ! sphenoid bone cartilage condensation
[Term]
id: UBERON:0009195
name: anal membrane
comment: During the 7th week the urorectal septum divides the cloacal membrane into a urogenital membrane (ventrally) and an anal membrane (dorsally) [http://www.embryology.ch/anglais/ugenital/genitexterne01.html]
xref: EHDAA2:0004018
xref: ncithesaurus:Anal_Membrane
xref: SCTID:344130000
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0006217 {source="EHDAA2"} ! cloacal membrane
relationship: part_of UBERON:0001353 {source="EHDAA2"} ! anal region
[Term]
id: UBERON:0009196
name: indifferent external genitalia
subset: organ_slim
xref: EHDAA2:0004021
is_a: UBERON:0004176 {source="cjm"} ! external reproductive organ
[Term]
id: UBERON:0009197
name: basioccipital pre-cartilage condensation
xref: EHDAA2:0000165
xref: EHDAA:6033
xref: EMAPA:18012
xref: VHOG:0000959
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_into UBERON:0001692 {source="EHDAA2"} ! basioccipital bone
relationship: part_of UBERON:0002241 {source="EMAPA"} ! chondrocranium
[Term]
id: UBERON:0009198
name: craniofacial suture
def: "any suture between cranial and/or facial bones." [GO:0097094]
comment: Editor notes: we follow GO in dividing sutures into cranial and facial and making a grouping class, but this is not consistent with FMA
synonym: "articulation of skull bones" RELATED [OBOL:automatic]
synonym: "joint of the skull bones" EXACT [OBOL:automatic]
is_a: UBERON:0002209 {source="FMA-abduced"} ! fibrous joint
[Term]
id: UBERON:0009199
name: facial suture
def: "any suture between facial bones." [GO:0097096]
is_a: UBERON:0009198 ! craniofacial suture
relationship: connects UBERON:0003462 {cardinality="2"} ! facial bone
relationship: connects UBERON:0003462 {notes="between two adjacent facial bones"} ! facial bone
[Term]
id: UBERON:0009200
name: limb epidermis
def: "The limb epidermis is the outer epithelial layer of the limb, it is a complex stratified squamous epithelium." [GOC:dph, GOC:sdb_2009, GOC:tb]
is_a: UBERON:0001003 ! epidermis
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002101
intersection_of: UBERON:0001003 ! epidermis
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0009201
name: nephric duct
def: "A nephric duct is a tube that drains a primitive kidney[GO]." [GO:0072176]
comment: pronephric duct or mesonephric duct
is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube
is_a: UBERON:0004819 ! kidney epithelium
is_a: UBERON:0006553 ! renal duct
is_a: UBERON:0006555 ! excretory tube
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0009202
name: vasa recta descending limb
xref: KUPO:0001002
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta
[Term]
id: UBERON:0009203
name: internasal suture
def: "a suture joining the nasal bones." [Wikipedia:Internasal_suture]
synonym: "inter-nasal suture" EXACT []
synonym: "internasal suture of skull" EXACT [FMA:52959]
synonym: "nasal suture" BROAD [GO:0097097]
synonym: "sutura internasalis" EXACT [Wikipedia:Internasal_suture]
synonym: "sutura internasalis" RELATED LATIN [Wikipedia:Internasal_suture]
xref: FMA:52959
xref: SCTID:368990004
is_a: UBERON:0011160 ! nasal suture
relationship: connects UBERON:0001681 {notes="between both nasal bones"} ! nasal bone
relationship: connects UBERON:0001681 {cardinality="2"} ! nasal bone
[Term]
id: UBERON:0009204
name: medial nasal process mesenchyme
xref: EHDAA2:0001077
xref: EMAPA:16810
is_a: UBERON:0009501 ! mesenchyme of fronto-nasal process
relationship: part_of UBERON:0004068
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0004068 ! medial nasal prominence
relationship: develops_from UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest
relationship: part_of UBERON:0004068 ! medial nasal prominence
relationship: part_of UBERON:0004068 {source="EHDAA2"} ! medial nasal prominence
[Term]
id: UBERON:0009205
name: lateral nasal process mesenchyme
synonym: "mesenchyme of latero-nasal process" EXACT [EMAPA:16807]
xref: EHDAA2:0000917
xref: EMAPA:16807
is_a: UBERON:0009501 ! mesenchyme of fronto-nasal process
relationship: part_of UBERON:0004067
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0004067 ! lateral nasal prominence
relationship: develops_from UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest
relationship: part_of UBERON:0004067 ! lateral nasal prominence
[Term]
id: UBERON:0009206
name: lateral nasal process surface ectoderm
synonym: "ectoderm of latero-nasal process" EXACT [EMAPA:16806]
xref: EHDAA2:0000918
xref: EMAPA:16806
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0000924 ! ectoderm
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0004067
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0004067 ! lateral nasal prominence
relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm
relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm
relationship: part_of UBERON:0004067 ! lateral nasal prominence
[Term]
id: UBERON:0009207
name: geschmacksstreifen
def: "Area on the rostral portion of the soft palate rich in tastebuds (Miller and Spangler 1982)." [PMID:19295142]
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001716 ! secondary palate
[Term]
id: UBERON:0009210
name: pharyngeal membrane
def: "a thin fold of ectoderm and endoderm that separates the pharyngeal pouches from the branchial clefts in a developing embryo." [http://musom.marshall.edu/anatomy/grosshom/z_devbranc.html]
synonym: "pharyngeal membrane" EXACT []
xref: ncithesaurus:Pharyngeal_Membrane
is_a: UBERON:0002050 ! embryonic structure
relationship: has_part UBERON:0000924 ! ectoderm
relationship: has_part UBERON:0000925 ! endoderm
relationship: overlaps UBERON:0004117 ! pharyngeal pouch
relationship: overlaps UBERON:0005879 ! pharyngeal cleft
[Term]
id: UBERON:0009213
name: pharyngeal membrane of 1st arch
def: "separates the first pharyngeal groove from the first pharyngeal pouch." [ISBN10:1416037055]
comment: check EMAPA - 3 terms appear to match. We follow EMAPA in making each membrane part of the arch with the same number, though in fact it is between these arches
synonym: "1st branchial membrane" EXACT [EMAPA:16992]
synonym: "1st pharyngeal membrane" EXACT [VHOG:0001427]
synonym: "future tympanic membrane" EXACT [EMAPA:17281]
synonym: "tympanic membrane primordium" EXACT [ISBN10:1416037055]
xref: EHDAA:3788
xref: EMAPA:16121
xref: EMAPA:16992
xref: EMAPA:17281
xref: VHOG:0001427
is_a: UBERON:0009210 ! pharyngeal membrane
relationship: overlaps UBERON:0005872 ! 1st arch pharyngeal cleft
relationship: overlaps UBERON:0007122 ! pharyngeal pouch 1
relationship: part_of UBERON:0004362 {source="EMAPA"} ! pharyngeal arch 1
[Term]
id: UBERON:0009215
name: pharyngeal membrane of 2nd arch
synonym: "2nd pharyngeal membrane" EXACT [VHOG:0000877]
xref: EMAPA:16273
xref: VHOG:0000877
is_a: UBERON:0009210 ! pharyngeal membrane
relationship: overlaps UBERON:0005873 ! 2nd arch pharyngeal cleft
relationship: overlaps UBERON:0007123 ! pharyngeal pouch 2
relationship: part_of UBERON:0003066 {source="EMAPA"} ! pharyngeal arch 2
[Term]
id: UBERON:0009216
name: pharyngeal membrane of 3rd arch
synonym: "3rd pharyngeal membrane" EXACT [VHOG:0000876]
xref: EMAPA:16583
xref: VHOG:0000876
is_a: UBERON:0009210 ! pharyngeal membrane
relationship: overlaps UBERON:0005874 ! 3rd arch pharyngeal cleft
relationship: overlaps UBERON:0007124 ! pharyngeal pouch 3
relationship: part_of UBERON:0003114 {source="EMAPA"} ! pharyngeal arch 3
[Term]
id: UBERON:0009217
name: pharyngeal membrane of 4th arch
synonym: "4th pharyngeal membrane" EXACT [UBERON:cjm]
xref: EMAPA:16763
is_a: UBERON:0009210 ! pharyngeal membrane
relationship: overlaps UBERON:0005875 ! 4th arch pharyngeal cleft
relationship: overlaps UBERON:0007125 ! pharyngeal pouch 4
relationship: part_of UBERON:0003115 {source="EMAPA"} ! pharyngeal arch 4
[Term]
id: UBERON:0009291
name: cartilaginous centrum of vertebra
comment: cartilaginous centrum of vertebra[PMID:11746457]
xref: SCTID:317278007
is_a: UBERON:0001075 ! body of vertebra
is_a: UBERON:0007844 ! cartilaginous element
[Term]
id: UBERON:0009292
name: embryonic nasal process
xref: EHDAA:4776
xref: EMAPA:16680
xref: SCTID:308881001
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0009293
name: embryonic frontal process
xref: EHDAA:4780
xref: EMAPA:16802
xref: SCTID:346265009
xref: VHOG:0001323
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0004066 {source="EMAPA"} ! frontonasal prominence
[Term]
id: UBERON:0009468
name: basiotic bone
def: "a small bone in the fetus between the basilar process and the basisphenoid." [http://medical-dictionary.thefreedictionary.com/basiotic+bone]
synonym: "basiotic" EXACT []
xref: SCTID:95946002
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0011164 ! neurocranium bone
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0009470
name: postsphenoidal bone
def: "the posterior portion of the sphenoid bone developed in five separate parts consisting of a central basisphenoid, the two alisphenoids, and the two medial pterygoid laminae." [http://www.merriam-webster.com/dictionary/postsphenoid, Wikipedia:Ossification_of_sphenoid#Postsphenoid]
xref: SCTID:95950009
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0011164 {source="MA"} ! neurocranium bone
relationship: part_of UBERON:0001677 {source="cjm"} ! sphenoid bone
[Term]
id: UBERON:0009471
name: dorsum of tongue
def: "the superior surface of the tongue divided by the sulcus terminalis into an anterior two-thirds, the presulcal part (pars presulcalis). and a posterior one-third, the postsulcal part (pars postsulcalis)." [http://www.drugs.com/dict/dorsum-of-tongue.html]
synonym: "dorsal tongue" EXACT [FMA:54651]
synonym: "dorsum linguae" EXACT [http://www.drugs.com/dict/dorsum-of-tongue.html]
synonym: "tongue dorsum" EXACT [FMA:54651]
xref: FMA:54651
xref: ncithesaurus:Dorsum_of_the_Tongue
xref: SCTID:66938003
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001723 {source="FMA"} ! tongue
[Term]
id: UBERON:0009472
name: axilla
def: "The axilla is the area on the human body directly under the joint where the arm connects to the shoulder." [Wikipedia:Axilla]
synonym: "arm pit" EXACT [Wikipedia:Axilla]
synonym: "armpit" EXACT [Wikipedia:Axilla]
synonym: "armpits" RELATED [Wikipedia:Axilla]
synonym: "axilla" RELATED LATIN [Wikipedia:Axilla]
synonym: "axillae" RELATED [Wikipedia:Axilla]
synonym: "axillary region" EXACT [FMA:24864]
synonym: "axillary region" RELATED [Wikipedia:Axilla]
synonym: "oxter" RELATED [Wikipedia:Axilla]
synonym: "regio axillaris" EXACT [FMA:TA]
synonym: "underarm" RELATED [Wikipedia:Axilla]
xref: FMA:24864
xref: galen:Axilla
xref: http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png
xref: MESH:A.01.378.800.090
xref: ncithesaurus:Axilla
xref: SCTID:362732006
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0001421 {source="FMA"} ! pectoral girdle region
[Term]
id: UBERON:0009473
name: parapodium
def: "either of a pair of fleshy lateral processes borne by most segments of a polychaete worm." [http://www.merriam-webster.com/dictionary/parapodium?show=0&t=1314575672, Wikipedia:Parapodium]
synonym: "paradpod" EXACT []
synonym: "paradpodia" RELATED PLURAL []
synonym: "polychaete paradpodium" EXACT []
is_a: UBERON:0000026 ! appendage
relationship: part_of UBERON:0000914 ! organismal segment
[Term]
id: UBERON:0009474
name: ascidian ampulla
synonym: "ampulla" BROAD []
is_a: UBERON:0000026 ! appendage
[Term]
id: UBERON:0009475
name: ampullar siphon
is_a: UBERON:0000026 ! appendage
relationship: part_of UBERON:0009474 ! ascidian ampulla
[Term]
id: UBERON:0009476
name: madreporite
def: "The madreporite is an opening used to filter water into the water vascular system of echinoderms. It is visible as a small red or yellow button-like structure, looking like a small wart, on the aboral surface of the central disk of a sea star. Close up, it is visibly structured, resembling a \"madrepore\" colony. From this, it derives its name. The water vascular system of the sea star consists of a series of seawater-filled ducts that function in locomotion and feeding and respiration. Its main parts are the madreporite, the stone canal, the ring canal, the radial canals, the lateral canals, and the tube feet. The sieve-like madreporite allows entry of seawater into the stone canal, which connects to the ring canal around the mouth. Five or more radial canals extend from the ring canal, one in each arm above the ambulacral groove. From the radial canals extend many lateral canals, each of which leads to a tube foot. Each tube foot is a closed cylinder with muscular walls, having a sucker at the outer end and a bulb-like ampulla at its inner end within the body cavity." [Wikipedia:Madreporite]
is_a: UBERON:0003978 ! valve
relationship: part_of UBERON:0008251 {source="BTO"} ! water vascular system
relationship: part_of UBERON:0008259 ! aboral surface
[Term]
id: UBERON:0009477
name: associated mesenchyme of otic placode
subset: emapa_ehdaa2
xref: EHDAA2:0001340
xref: EMAPA:16196
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: part_of UBERON:0003069
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003069 ! otic placode
relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: part_of UBERON:0003069 ! otic placode
[Term]
id: UBERON:0009478
name: associated mesenchyme of midgut
subset: emapa_ehdaa2
synonym: "early midgut associated mesenchyme" EXACT [EHDAA2:0001186]
xref: EHDAA2:0001186
xref: EMAPA:16256
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0010378 ! mesenchyme from splanchnopleure
relationship: part_of UBERON:0001045
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001045 ! midgut
relationship: develops_from UBERON:0010378 {source="EHDAA2"} ! mesenchyme from splanchnopleure
relationship: part_of UBERON:0001045 ! midgut
[Term]
id: UBERON:0009479
name: ectoderm of buccopharyngeal membrane
subset: emapa_ehdaa2
xref: EHDAA2:0000190
xref: EMAPA:16260
is_a: UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0006211
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0006211 ! buccopharyngeal membrane
relationship: part_of UBERON:0006211 ! buccopharyngeal membrane
[Term]
id: UBERON:0009480
name: endoderm of buccopharyngeal membrane
subset: emapa_ehdaa2
xref: EHDAA2:0000191
xref: EMAPA:16261
is_a: UBERON:0000925 ! endoderm
relationship: part_of UBERON:0006211
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0006211 ! buccopharyngeal membrane
relationship: part_of UBERON:0006211 ! buccopharyngeal membrane
[Term]
id: UBERON:0009481
name: cavity of pericardio-peritoneal canal
subset: emapa_ehdaa2
xref: EHDAA2:0001441
xref: EMAPA:16283
xref: VHOG:0000564
is_a: UBERON:0005082 ! tube lumen
relationship: part_of UBERON:0006275
intersection_of: UBERON:0005082 ! tube lumen
intersection_of: part_of UBERON:0006275 ! pericardio-peritoneal canal
relationship: part_of UBERON:0006275 ! pericardio-peritoneal canal
[Term]
id: UBERON:0009482
name: associated mesenchyme of foregut-midgut junction
subset: emapa_ehdaa2
xref: EHDAA2:0000570
xref: EMAPA:16364
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0006235
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0006235 ! foregut-midgut junction
relationship: part_of UBERON:0006235 ! foregut-midgut junction
[Term]
id: UBERON:0009483
name: mesentery of foregut-midgut junction
subset: emapa_ehdaa2
xref: EHDAA2:0000575
xref: EMAPA:16365
xref: VHOG:0000430
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002095 ! mesentery
relationship: part_of UBERON:0006235
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0006235 ! foregut-midgut junction
relationship: part_of UBERON:0006235 ! foregut-midgut junction
[Term]
id: UBERON:0009484
name: dorsal mesentery of mesentery of foregut-midgut junction
subset: emapa_ehdaa2
xref: EHDAA2:0000571
xref: EMAPA:16366
is_a: UBERON:0009483 ! mesentery of foregut-midgut junction
[Term]
id: UBERON:0009494
name: pharyngeal arch mesenchymal region
def: "A portion of mesenchymal tissue associated with an individual pharyngeal arch." [UBERON:cjm]
comment: Editor notes: this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures. [MP:0011262]
synonym: "branchial arch mesenchyme" EXACT [MP:0011262]
synonym: "pharyngeal arch mesenchyme" EXACT [UBERON:cjm]
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
relationship: part_of UBERON:0002539
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002539 ! pharyngeal arch
relationship: has_developmental_contribution_from UBERON:0003099 {source="cjm"} ! cranial neural crest
relationship: part_of UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme
[Term]
id: UBERON:0009495
name: extrahepatic part of biliary bud
subset: emapa_ehdaa2
xref: EHDAA2:0000172
xref: EMAPA:16562
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0007499 ! epithelial sac
relationship: develops_from UBERON:0004912 {source="EHDAA2"} ! biliary bud
[Term]
id: UBERON:0009496
name: intrahepatic part of biliary bud
subset: emapa_ehdaa2
xref: EHDAA2:0000173
xref: EMAPA:16563
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0007499 ! epithelial sac
relationship: develops_from UBERON:0004912 {source="EHDAA2"} ! biliary bud
[Term]
id: UBERON:0009497
name: epithelium of foregut-midgut junction
subset: emapa_ehdaa2
xref: EHDAA2:0000573
xref: EMAPA:16564
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0003929 ! gut epithelium
relationship: part_of UBERON:0006235
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0006235 ! foregut-midgut junction
relationship: part_of UBERON:0006235 ! foregut-midgut junction
[Term]
id: UBERON:0009499
name: parietal of mesothelium of pericardio-peritoneal canal
subset: emapa_ehdaa2
xref: EHDAA2:0001409
xref: EMAPA:16590
is_a: UBERON:0007185 ! pericardio-peritoneal canal mesothelium
relationship: part_of UBERON:0007185 ! pericardio-peritoneal canal mesothelium
[Term]
id: UBERON:0009500
name: associated mesenchyme of otocyst
subset: emapa_ehdaa2
xref: EHDAA2:0001343
xref: EMAPA:16670
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: part_of UBERON:0003051
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003051 ! ear vesicle
relationship: develops_from UBERON:0009477 {source="EHDAA2"} ! associated mesenchyme of otic placode
relationship: part_of UBERON:0003051 ! ear vesicle
[Term]
id: UBERON:0009501
name: mesenchyme of fronto-nasal process
def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the frontonasal region of the head" [MP:0011266]
subset: emapa_ehdaa2
synonym: "frontonasal mesenchyme" EXACT [MP:0011266]
synonym: "naso-frontal mesenchyme" EXACT [MP:0011266]
xref: EHDAA2:0004109
xref: EMAPA:16683
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: part_of UBERON:0004066
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0004066 ! frontonasal prominence
relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: part_of UBERON:0004066 ! frontonasal prominence
[Term]
id: UBERON:0009502
name: ventral mesentery of mesentery of foregut-midgut junction
subset: emapa_ehdaa2
xref: EMAPA:16714
xref: RETIRED_EHDAA2:0000576
is_a: UBERON:0009483 ! mesentery of foregut-midgut junction
[Term]
id: UBERON:0009503
name: associated mesenchyme of hindgut
subset: emapa_ehdaa2
xref: EHDAA2:0000780
xref: EMAPA:16716
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001046
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001046 ! hindgut
relationship: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0009504
name: associated mesenchyme of main bronchus
subset: emapa_ehdaa2
xref: EHDAA2:0001045
xref: EMAPA:16850
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
relationship: part_of UBERON:0002182
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0009505
name: associated mesenchyme of trachea
subset: emapa_ehdaa2
xref: EHDAA2:0002067
xref: EMAPA:16854
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0003126
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003126 ! trachea
relationship: develops_from UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0009506
name: associated mesenchyme of middle ear
comment: Also 1st arch maxillary mesenchyme in EHDAA2
subset: emapa_ehdaa2
synonym: "middle ear associated mesenchyme" EXACT [EHDAA2:0001182]
synonym: "otic mesenchyme" BROAD []
xref: EHDAA2:0001182
xref: EMAPA:17001
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
relationship: part_of UBERON:0001756
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001756 ! middle ear
relationship: has_developmental_contribution_from UBERON:0005689 {source="EHDAA2"} ! 2nd arch mesenchyme
relationship: has_developmental_contribution_from UBERON:0010045 {source="EHDAA2"} ! 1st arch maxillary mesenchyme
relationship: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0009521
name: anal membrane endodermal component
subset: emapa_ehdaa2
xref: EHDAA2:0004020
xref: EMAPA:17177
is_a: UBERON:0003260 ! endoderm of hindgut
relationship: part_of UBERON:0001353
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001353 ! anal region
relationship: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0009522
name: lateral lingual swelling epithelium
subset: emapa_ehdaa2
xref: EHDAA2:0000913
xref: EMAPA:17190
is_a: UBERON:0003351 ! pharyngeal epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0006757
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0006757 ! lateral lingual swelling
relationship: part_of UBERON:0006757 ! lateral lingual swelling
[Term]
id: UBERON:0009523
name: mesenchyme of handplate
subset: emapa_ehdaa2
synonym: "hand plate mesenchyme" EXACT []
synonym: "handplate mesenchyme" EXACT [EHDAA2:0000731]
xref: EHDAA2:0000731
xref: EMAPA:17248
is_a: UBERON:0010377 ! mesenchyme from somatopleure
relationship: part_of UBERON:0006875
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0006875 ! handplate
relationship: develops_from UBERON:0003413 {source="EHDAA2"} ! forelimb/pectoral fin bud mesenchyme
relationship: part_of UBERON:0006875 ! handplate
[Term]
id: UBERON:0009526
name: maxillary process mesenchyme
subset: emapa_ehdaa2
synonym: "mesenchyme of maxillary process" EXACT [EMAPA:17361]
synonym: "mesenchyme of maxillary prominence" EXACT [UBERON:cjm]
xref: EHDAA2:0001071
xref: EMAPA:17361
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0005868
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0005868 ! maxillary prominence
relationship: part_of UBERON:0005868 ! maxillary prominence
[Term]
id: UBERON:0009536
name: vascular element of left lung
subset: emapa_ehdaa2
xref: EHDAA2:0000963
xref: EMAPA:17660
is_a: UBERON:0000102 ! lung vasculature
is_a: UBERON:0005629 ! vascular plexus
relationship: part_of UBERON:0002168
intersection_of: UBERON:0005629 ! vascular plexus
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0009537
name: vascular element of right lung
subset: emapa_ehdaa2
xref: EHDAA2:0001757
xref: EMAPA:17668
is_a: UBERON:0000102 ! lung vasculature
is_a: UBERON:0005629 ! vascular plexus
relationship: part_of UBERON:0002167
intersection_of: UBERON:0005629 ! vascular plexus
intersection_of: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0009538
name: mesenchyme of sublingual gland primordium
subset: emapa_ehdaa2
xref: EHDAA2:0001937
xref: EMAPA:17754
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0006297
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0006297 ! sublingual gland primordium
relationship: develops_from UBERON:0003324 ! mesenchyme of lower jaw
relationship: part_of UBERON:0006297 ! sublingual gland primordium
[Term]
id: UBERON:0009539
name: mesenchyme of submandibular gland primordium
subset: emapa_ehdaa2
xref: EHDAA2:0001941
xref: EMAPA:17757
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0006298
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0006298 ! submandibular gland primordium
relationship: develops_from UBERON:0003324 ! mesenchyme of lower jaw
relationship: part_of UBERON:0006298 ! submandibular gland primordium
[Term]
id: UBERON:0009548
name: hepatic sinusoid of left of lobe of liver
subset: emapa_ehdaa2
xref: EHDAA2:0001001
xref: EMAPA:18309
xref: VHOG:0000709
is_a: UBERON:0001281 ! hepatic sinusoid
relationship: part_of UBERON:0001115
intersection_of: UBERON:0001281 ! hepatic sinusoid
intersection_of: part_of UBERON:0001115 ! left lobe of liver
relationship: develops_in UBERON:0001115 ! left lobe of liver
relationship: part_of UBERON:0001115 ! left lobe of liver
[Term]
id: UBERON:0009549
name: hepatic sinusoid of right of lobe of liver
subset: emapa_ehdaa2
xref: EHDAA2:0001009
xref: EMAPA:18316
xref: VHOG:0000710
is_a: UBERON:0001281 ! hepatic sinusoid
relationship: part_of UBERON:0001114
intersection_of: UBERON:0001281 ! hepatic sinusoid
intersection_of: part_of UBERON:0001114 ! right lobe of liver
relationship: develops_in UBERON:0001114 ! right lobe of liver
relationship: part_of UBERON:0001114 ! right lobe of liver
[Term]
id: UBERON:0009550
name: endoderm of foregut-midgut junction
subset: emapa_ehdaa2
xref: EHDAA2:0000572
xref: EMAPA:18403
is_a: UBERON:0000925 ! endoderm
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0006235
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0006235 ! foregut-midgut junction
relationship: part_of UBERON:0006235 ! foregut-midgut junction
[Term]
id: UBERON:0009551
name: distal segment of digit
def: "A segment of a digit containing the distal phalanx, and overlapping the interphalangeal joint[CJM]. The digit tip is derived from multiple and distinct embryonic origins, and includes the distal bone with associated marrow cavity and haematopoietic cells, ventral (flexor) and dorsal (extensor) tendons, sweat glands with myoepithelial and luminal secreting cells and associated neurons for innervation, dermis with resident melanocytes and dendritic cells, mesenchyme with resident fibroblasts, skin epidermis with hair follicles, a nail organ composed of six specific parts (the root, nail bed, nail plate, eponychium (cuticle), perionychium and hyponychium)." [doi:10.1038/nature10346]
comment: Newborn and adult mice are able to regrow forelimb (finger) and hindlimb (toe) digit tips after their amputation through the distal interphalangeal joint. Regeneration of the digit tip involves the integrated regrowth of multiple tissues within 2–3 months, reaching an external morphology that is cosmetically and functionally similar to normal digits. Most importantly, regeneration of the mouse distal digit shares morphological similarities with clinical cases documenting regrowth of missing distal portions of fingers in both children and adults
synonym: "digit tip" EXACT [UBERON:cjm]
synonym: "distal digit segment" EXACT [UBERON:cjm]
synonym: "tip of digit" EXACT [UBERON:cjm]
is_a: UBERON:0002529 ! limb segment
relationship: overlaps UBERON:0006658 {source="cjm"} ! inter-phalangeal joint
relationship: part_of UBERON:0002544 ! digit
[Term]
id: UBERON:0009552
name: distal segment of hand digit
alt_id: UBERON:0004093
def: "." [HP:0001211]
comment: in SNOMED this is a surface region. Here we intend it to be the entire distal segment
synonym: "finger digit tip" EXACT [doi:10.1038/nature10346]
synonym: "finger distal segment" EXACT [UBERON:cjm]
synonym: "finger tip" EXACT [UBERON:cjm]
synonym: "fingertip" EXACT [HP:0001211]
synonym: "forelimb digit tip" EXACT [doi:10.1038/nature10346]
synonym: "tip of finger" EXACT [SCTID:312543003]
xref: OpenCyc:Mx4rvVjpf5wpEbGdrcN5Y29ycA
xref: SCTID:312543003
is_a: UBERON:0005451 ! segment of hand
is_a: UBERON:0009551 ! distal segment of digit
relationship: part_of UBERON:0002389
intersection_of: UBERON:0009551 ! distal segment of digit
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit
[Term]
id: UBERON:0009553
name: distal segment of foot digit
synonym: "hindlimb digit tip" EXACT [doi:10.1038/nature10346]
synonym: "tip of toe" EXACT [UBERON:cjm]
synonym: "toe digit tip" EXACT [doi:10.1038/nature10346]
synonym: "toe distal segment" EXACT [UBERON:cjm]
is_a: UBERON:0005445 ! segment of foot
is_a: UBERON:0009551 ! distal segment of digit
relationship: part_of UBERON:0001466
intersection_of: UBERON:0009551 ! distal segment of digit
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit
[Term]
id: UBERON:0009554
name: coffin bone
def: "the bottommost bone in the equine leg and is encased by the hoof capsule. The distal phalanx articulates with both the middle phalanx and the distal sesamoid, forming the distal interphalangeal joint " [Wikipedia:Coffin_bone]
synonym: "equine distal phalanx" EXACT [UBERON:cjm]
synonym: "pedal bone" EXACT [Wikipedia:Coffin_bone, Wikipedia:Equine_forelimb_anatomy#Distal_phalanx]
is_a: UBERON:0004300 ! distal phalanx
[Term]
id: UBERON:0009555
name: short pastern bone
def: "." [Wikipedia:Equine_forelimb_anatomy#Middle_phalanx]
synonym: "equine middle phalanx" EXACT [UBERON:cjm]
is_a: UBERON:0004301 ! middle phalanx
is_a: UBERON:0009558 ! pastern bone
[Term]
id: UBERON:0009556
name: long pastern bone
def: "." [Wikipedia:Equine_forelimb_anatomy#Proximal_phalanx]
synonym: "equine proximal phalanx" EXACT [UBERON:cjm]
is_a: UBERON:0004302 ! proximal phalanx
is_a: UBERON:0009558 ! pastern bone
[Term]
id: UBERON:0009557
name: coffin joint
synonym: "equine distal interphalangeal joint" EXACT [UBERON:cjm]
xref: SCTID:196392002
is_a: UBERON:0006658 ! inter-phalangeal joint
[Term]
id: UBERON:0009558
name: pastern bone
def: "A bone that is part of the pastern region of a horse limb." [Wikipedia:Pastern]
xref: http://upload.wikimedia.org/wikipedia/commons/5/56/Equine-dist-forelimb-bones.png
is_a: UBERON:0003221 ! phalanx
relationship: part_of UBERON:0009563 ! pastern region of limb
[Term]
id: UBERON:0009559
name: metacarpal/tarsal-phalangeal joint
comment: Editor notes: We include these joints as being part of the digits; this is consistent with the FMA, and makes classification easier. Note that digit and metapodial regions are part-disjoint
synonym: "fetlock" NARROW SENSU [UBERON:cjm, Wikipedia:Fetlock]
synonym: "metacarpo-tarsophalangeal joint" EXACT [UBERON:cjm]
synonym: "metapodium-phalanx joint" EXACT [UBERON:cjm]
is_a: UBERON:0003841 ! autopod joint
is_a: UBERON:0011139 ! synovial limb joint
relationship: connects UBERON:0003656
relationship: connects UBERON:0004302
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0003656 ! mesopodium bone
intersection_of: connects UBERON:0004302 ! proximal phalanx
relationship: connects UBERON:0003656 ! mesopodium bone
relationship: connects UBERON:0004302 ! proximal phalanx
relationship: part_of UBERON:0002544 ! digit
[Term]
id: UBERON:0009563
name: pastern region of limb
def: "a part of the leg of a horse between the fetlock and the top of the hoof. It incorporates the long pastern bone (proximal phalanx) and the short pastern bone (middle phalanx), which are held together by two sets of paired ligaments to form the pastern joint (proximal interphalangeal joint)" [Wikipedia:Pastern]
comment: note that digit is used very generically in uberon, to include the homologous region in ungulates. Taxon notes: Anatomically homologous to the two largest bones found in the human finger
xref: SCTID:370725009
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002544 ! digit
[Term]
id: UBERON:0009564
name: distal limb integumentary appendage
def: "A nail, hoof or claw." [PMID:11710767]
comment: Consider classifying as something different from appendage
synonym: "unguis" RELATED []
xref: MESH:A.13.491
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004708 ! limb/fin
relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! skin basal layer
relationship: part_of UBERON:0001003 ! epidermis
relationship: part_of UBERON:0009551 {source="cjm"} ! distal segment of digit
[Term]
id: UBERON:0009565
name: nail of forelimb digit
synonym: "finger nail" EXACT [FMA:54327]
synonym: "fingernail" EXACT [FMA:54327]
synonym: "nail of finger" EXACT [FMA:54327]
xref: FMA:54327
xref: ncithesaurus:Fingernail
xref: SCTID:244197001
is_a: UBERON:0001705 ! nail
is_a: UBERON:0004710 ! pectoral appendage
relationship: part_of UBERON:0002389
intersection_of: UBERON:0001705 ! nail
intersection_of: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0002389 ! hand digit
relationship: part_of UBERON:0005276 {source="FMA"} ! dorsal skin of finger
[Term]
id: UBERON:0009566
name: intestinal submucosa
synonym: "submucosa of intestine" EXACT [FMA:15696]
xref: FMA:15696
is_a: UBERON:0000009 ! submucosa
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000160
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001262 {source="FMA"} ! wall of intestine
[Term]
id: UBERON:0009567
name: nail of hindlimb digit
synonym: "nail of toe" EXACT [FMA:54328]
synonym: "toe nail" EXACT [FMA:54328]
synonym: "toenail" EXACT [FMA:54328]
xref: FMA:54328
xref: ncithesaurus:Toe_Nail
xref: SCTID:244198006
is_a: UBERON:0001705 ! nail
is_a: UBERON:0004709 ! pelvic appendage
relationship: part_of UBERON:0001466
intersection_of: UBERON:0001705 ! nail
intersection_of: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0001466 ! foot digit
relationship: part_of UBERON:0005277 {source="FMA"} ! dorsal skin of toe
[Term]
id: UBERON:0009568
name: trunk region of vertebral column
def: "Subdivision of vertebral column that corresponds to the trunk of the body, containing the trunk/presacral vertebrae." [UBERONREF:0000006]
synonym: "presacral region" RELATED [AAO:0000612]
synonym: "thoracolumbar region" RELATED [AAO:0000612]
synonym: "trunk region" RELATED [AAO:0000612]
xref: AAO:0000612
xref: ncithesaurus:Thoracolumbar_Region
xref: SCTID:281699004
property_value: UBPROP:0000001 "Region of the vertebral column between the atlas and the sacrum consisting of seven to 285 vertebrae.[AAO]" xsd:string
is_a: UBERON:0006077 ! subdivision of vertebral column
relationship: part_of UBERON:0002100
relationship: subdivision_of UBERON:0002100
intersection_of: UBERON:0006077 ! subdivision of vertebral column
intersection_of: part_of UBERON:0002100 ! trunk
intersection_of: subdivision_of UBERON:0002100 ! trunk
relationship: part_of UBERON:0002100 ! trunk
relationship: subdivision_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0009569
name: subdivision of trunk
synonym: "region of trunk" EXACT [FMA:25054]
synonym: "trunk subdivision" EXACT [FMA:25054]
xref: FMA:25054
xref: SCTID:22943007
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0009570
name: spinal cord sulcus limitans
synonym: "spinal cord lateral wall sulcus limitans" EXACT [EHDAA2:0001265]
xref: EHDAA2:0001265
xref: EMAPA:17584
xref: VHOG:0001548
is_a: UBERON:0005478 ! sulcus limitans of neural tube
relationship: part_of UBERON:0006241
intersection_of: UBERON:0005478 ! sulcus limitans of neural tube
intersection_of: part_of UBERON:0006241 ! future spinal cord
relationship: part_of UBERON:0006241 ! future spinal cord
[Term]
id: UBERON:0009571
name: ventral midline
def: "In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate." [GOC:bf, GOC:go_curators, PMID:12075342]
xref: FBbt:00000093
is_a: UBERON:0002050 {source="FMA"} ! embryonic structure
[Term]
id: UBERON:0009572
name: lumen of central canal of spinal cord
def: "A cerebrospinal fluid-filled space that runs longitudinally through the length of the entire spinal cord. The central canal is contiguous with the ventricular system of the brain. The central canal represents the adult remainder of the neural tube." [Wikipedia:Central_canal]
synonym: "cavity of central canal of spinal cord" EXACT [FMA:242845]
synonym: "central canal lumen" EXACT [UBERON:cjm]
xref: FMA:242845
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0005281 {source="FMA-modified"} ! ventricular system of central nervous system
relationship: surrounded_by UBERON:0002291 {source="FMA-modified"} ! central canal
relationship: surrounds UBERON:0001359 ! cerebrospinal fluid
[Term]
id: UBERON:0009573
name: sulcus limitans of fourth ventricle
def: "In the floor of the fourth ventricle, the sulcus limitans separates the cranial nerve motor nuclei (medial) from the sensory nuclei (lateral). In the superior part of the rhomboid fossa, it corresponds with the lateral limit of the fossa and presents a bluish-gray area, the locus ceruleus (which owes its color to an underlying patch of deeply pigmented nerve cells, termed the substantia ferruginea). [WP]" [Wikipedia:Sulcus_limitans]
synonym: "s. limitans fossae rhomboideae" RELATED LATIN [Wikipedia:Sulcus_limitans]
synonym: "sulcus limitans" BROAD [FMA:78496]
xref: FMA:78496
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Gray709.png
xref: ncithesaurus:Sulcus_Limitans
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0002422 ! fourth ventricle
[Term]
id: UBERON:0009576
name: medulla oblongata sulcus limitans
xref: EHDAA2:0001100
xref: EMAPA:17561
is_a: UBERON:0005478 ! sulcus limitans of neural tube
relationship: part_of UBERON:0010288
intersection_of: UBERON:0005478 ! sulcus limitans of neural tube
intersection_of: part_of UBERON:0010288 ! future medulla oblongata
relationship: part_of UBERON:0010288 ! future medulla oblongata
[Term]
id: UBERON:0009577
name: metencephalon sulcus limitans
xref: EHDAA2:0001161
xref: EMAPA:17567
is_a: UBERON:0005478 ! sulcus limitans of neural tube
relationship: part_of UBERON:0010092
intersection_of: UBERON:0005478 ! sulcus limitans of neural tube
intersection_of: part_of UBERON:0010092 ! future metencephalon
relationship: part_of UBERON:0010092 ! future metencephalon
[Term]
id: UBERON:0009578
name: myelencephalon sulcus limitans
xref: EHDAA2:0001945
is_a: UBERON:0005478 ! sulcus limitans of neural tube
relationship: part_of UBERON:0010096
intersection_of: UBERON:0005478 ! sulcus limitans of neural tube
intersection_of: part_of UBERON:0010096 ! future myelencephalon
relationship: part_of UBERON:0010096 ! future myelencephalon
[Term]
id: UBERON:0009579
name: myelencephalon basal plate
comment: todo - check EHDAA2 post-CNS-revision
synonym: "future myelencephalon basal plate" EXACT [EHDAA2:0000646]
xref: EHDAA2:0000646
xref: EMAPA:17088
xref: VHOG:0000322
is_a: UBERON:0004064 ! basal plate
[Term]
id: UBERON:0009580
name: diencephalon mantle layer
synonym: "diencephalon lateral wall mantle layer" EXACT []
xref: EHDAA2:0000397
xref: EMAPA:16906
xref: VHOG:0000912
is_a: UBERON:0005883 ! neural tube lateral wall mantle layer
relationship: part_of UBERON:0005591 {source="EMAPA"} ! diencephalon lateral wall
[Term]
id: UBERON:0009581
name: midbrain mantle layer
synonym: "midbrain lateral wall mantle layer" EXACT []
xref: EHDAA2:0001172
xref: EMAPA:16977
xref: VHOG:0000910
is_a: UBERON:0005883 ! neural tube lateral wall mantle layer
relationship: part_of UBERON:0005495 {source="EMAPA"} ! midbrain lateral wall
[Term]
id: UBERON:0009582
name: spinal cord lateral wall
synonym: "lateral wall spinal cord" EXACT [ZFA:0000996]
xref: EMAPA:17579
xref: TAO:0000996
xref: ZFA:0000996
is_a: UBERON:0005496 ! neural tube lateral wall
relationship: part_of UBERON:0002240 {source="EMAPA"} ! spinal cord
[Term]
id: UBERON:0009583
name: spinal cord mantle layer
synonym: "spinal cord lateral wall mantle layer" EXACT []
xref: EMAPA:17580
xref: VHOG:0000911
is_a: UBERON:0005883 ! neural tube lateral wall mantle layer
relationship: part_of UBERON:0009582 {source="EMAPA"} ! spinal cord lateral wall
[Term]
id: UBERON:0009584
name: 1st arch mandibular mesenchyme
alt_id: UBERON:0010043
synonym: "mesenchymal region of mandibular component of first pharyngeal arch" EXACT [UBERON:cjm]
synonym: "mesenchyme of mandibular component" EXACT [EMAPA:16385]
xref: EHDAA2:0000034
xref: EMAPA:16385
is_a: UBERON:0010042 ! 1st arch mesenchyme
relationship: part_of UBERON:0007237
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0007237 ! 1st arch mandibular component
relationship: part_of UBERON:0007237 ! 1st arch mandibular component
relationship: part_of UBERON:0007237 {source="EMAPA"} ! 1st arch mandibular component
[Term]
id: UBERON:0009585
name: interdigital region mesenchyme
is_a: UBERON:0009749 ! limb mesenchyme
relationship: part_of UBERON:0006012
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0006012 ! interdigital region
relationship: part_of UBERON:0006012 ! interdigital region
[Term]
id: UBERON:0009586
name: mesenchyme of interdigital region between digits 1 and 2 of forelimb
synonym: "interdigital region between fingers 1 and 2 mesenchyme" EXACT [EHDAA2:0000846]
xref: EHDAA2:0000846
xref: EMAPA:17447
is_a: UBERON:0009596 ! mesenchyme of interdigital region between digits 1 and 2
is_a: UBERON:0009600 ! mesenchyme of interdigital region of forelimb
relationship: part_of UBERON:0006026
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0006026 ! interdigital region between fingers 1 and 2
relationship: part_of UBERON:0006026 {source="EMAPA"} ! interdigital region between fingers 1 and 2
relationship: part_of UBERON:0006026 ! interdigital region between fingers 1 and 2
[Term]
id: UBERON:0009587
name: mesenchyme of interdigital region between digits 2 and 3 of forelimb
synonym: "interdigital region between fingers 2 and 3 mesenchyme" EXACT [EHDAA2:0000849]
xref: EHDAA2:0000849
xref: EMAPA:17450
is_a: UBERON:0009597 ! mesenchyme of interdigital region between digits 2 and 3
is_a: UBERON:0009600 ! mesenchyme of interdigital region of forelimb
relationship: part_of UBERON:0006029
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0006029 ! interdigital region between fingers 2 and 3
relationship: part_of UBERON:0006029 {source="EMAPA"} ! interdigital region between fingers 2 and 3
relationship: part_of UBERON:0006029 ! interdigital region between fingers 2 and 3
[Term]
id: UBERON:0009588
name: mesenchyme of interdigital region between digits 3 and 4 of forelimb
synonym: "interdigital region between fingers 3 and 4 mesenchyme" EXACT [EHDAA2:0000852]
xref: EHDAA2:0000852
xref: EMAPA:17453
is_a: UBERON:0009598 ! mesenchyme of interdigital region between digits 3 and 4
is_a: UBERON:0009600 ! mesenchyme of interdigital region of forelimb
relationship: part_of UBERON:0006032
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0006032 ! interdigital region between fingers 3 and 4
relationship: part_of UBERON:0006032 {source="EMAPA"} ! interdigital region between fingers 3 and 4
relationship: part_of UBERON:0006032 ! interdigital region between fingers 3 and 4
[Term]
id: UBERON:0009589
name: mesenchyme of interdigital region between digits 4 and 5 of forelimb
synonym: "interdigital region between fingers 4 and 5 mesenchyme" EXACT [EHDAA2:0000855]
xref: EHDAA2:0000855
xref: EMAPA:17456
is_a: UBERON:0009599 ! mesenchyme of interdigital region between digits 4 and 5
is_a: UBERON:0009600 ! mesenchyme of interdigital region of forelimb
relationship: part_of UBERON:0006035
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0006035 ! interdigital region between fingers 4 and 5
relationship: part_of UBERON:0006035 {source="EMAPA"} ! interdigital region between fingers 4 and 5
relationship: part_of UBERON:0006035 ! interdigital region between fingers 4 and 5
[Term]
id: UBERON:0009590
name: mesenchyme of interdigital region between digits 1 and 2 of hindlimb
synonym: "interdigital region between toes 1 and 2 mesenchyme" EXACT [EHDAA2:0000858]
xref: EHDAA2:0000858
xref: EMAPA:17478
is_a: UBERON:0009596 ! mesenchyme of interdigital region between digits 1 and 2
is_a: UBERON:0009601 ! mesenchyme of interdigital region of hindlimb
relationship: part_of UBERON:0006038
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0006038 ! interdigital region between toes 1 and 2
relationship: part_of UBERON:0006038 {source="EMAPA"} ! interdigital region between toes 1 and 2
relationship: part_of UBERON:0006038 ! interdigital region between toes 1 and 2
[Term]
id: UBERON:0009591
name: mesenchyme of interdigital region between digits 2 and 3 of hindlimb
synonym: "interdigital region between toes 2 and 3 mesenchyme" EXACT [EHDAA2:0000861]
xref: EHDAA2:0000861
xref: EMAPA:17481
is_a: UBERON:0009597 ! mesenchyme of interdigital region between digits 2 and 3
is_a: UBERON:0009601 ! mesenchyme of interdigital region of hindlimb
relationship: part_of UBERON:0006041
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0006041 ! interdigital region between toes 2 and 3
relationship: part_of UBERON:0006041 {source="EMAPA"} ! interdigital region between toes 2 and 3
relationship: part_of UBERON:0006041 ! interdigital region between toes 2 and 3
[Term]
id: UBERON:0009592
name: mesenchyme of interdigital region between digits 3 and 4 of hindlimb
synonym: "interdigital region between toes 3 and 4 mesenchyme" EXACT [EHDAA2:0000864]
xref: EHDAA2:0000864
xref: EMAPA:17484
is_a: UBERON:0009598 ! mesenchyme of interdigital region between digits 3 and 4
is_a: UBERON:0009601 ! mesenchyme of interdigital region of hindlimb
relationship: part_of UBERON:0006044
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0006044 ! interdigital region between toes 3 and 4
relationship: part_of UBERON:0006044 {source="EMAPA"} ! interdigital region between toes 3 and 4
relationship: part_of UBERON:0006044 ! interdigital region between toes 3 and 4
[Term]
id: UBERON:0009593
name: mesenchyme of interdigital region between digits 4 and 5 of hindlimb
synonym: "interdigital region between toes 4 and 5 mesenchyme" EXACT [EHDAA2:0000867]
xref: EHDAA2:0000867
xref: EMAPA:17487
is_a: UBERON:0009599 ! mesenchyme of interdigital region between digits 4 and 5
is_a: UBERON:0009601 ! mesenchyme of interdigital region of hindlimb
relationship: part_of UBERON:0006047
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0006047 ! interdigital region between toes 4 and 5
relationship: part_of UBERON:0006047 {source="EMAPA"} ! interdigital region between toes 4 and 5
relationship: part_of UBERON:0006047 ! interdigital region between toes 4 and 5
[Term]
id: UBERON:0009596
name: mesenchyme of interdigital region between digits 1 and 2
is_a: UBERON:0009585 ! interdigital region mesenchyme
relationship: part_of UBERON:0006016
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0006016 ! interdigital region between digits 1 and 2
relationship: part_of UBERON:0006016 ! interdigital region between digits 1 and 2
[Term]
id: UBERON:0009597
name: mesenchyme of interdigital region between digits 2 and 3
is_a: UBERON:0009585 ! interdigital region mesenchyme
relationship: part_of UBERON:0006019
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0006019 ! interdigital region between digits 2 and 3
relationship: part_of UBERON:0006019 ! interdigital region between digits 2 and 3
[Term]
id: UBERON:0009598
name: mesenchyme of interdigital region between digits 3 and 4
is_a: UBERON:0009585 ! interdigital region mesenchyme
relationship: part_of UBERON:0006022
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0006022 ! interdigital region between digits 3 and 4
relationship: part_of UBERON:0006022 ! interdigital region between digits 3 and 4
[Term]
id: UBERON:0009599
name: mesenchyme of interdigital region between digits 4 and 5
is_a: UBERON:0009585 ! interdigital region mesenchyme
relationship: part_of UBERON:0006025
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0006025 ! interdigital region between digits 4 and 5
relationship: part_of UBERON:0006025 ! interdigital region between digits 4 and 5
[Term]
id: UBERON:0009600
name: mesenchyme of interdigital region of forelimb
is_a: UBERON:0003859 ! forelimb mesenchyme
is_a: UBERON:0009585 ! interdigital region mesenchyme
relationship: part_of UBERON:0002398
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0009601
name: mesenchyme of interdigital region of hindlimb
is_a: UBERON:0003860 ! hindlimb mesenchyme
is_a: UBERON:0009585 ! interdigital region mesenchyme
relationship: part_of UBERON:0002387
intersection_of: UBERON:0009585 ! interdigital region mesenchyme
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0009602
name: left lung associated mesenchyme
xref: EHDAA2:0000944
xref: EMAPA:16730
xref: EMAPA:17654
is_a: UBERON:0004883 ! lung mesenchyme
relationship: part_of UBERON:0002168
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002168 ! left lung
relationship: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0009603
name: right lung associated mesenchyme
xref: EHDAA2:0001739
xref: EMAPA:17662
is_a: UBERON:0004883 ! lung mesenchyme
relationship: part_of UBERON:0002167
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002167 ! right lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0009610
name: forebrain neural plate
xref: TAO:0007018
xref: ZFA:0007018
is_a: UBERON:0003075 ! neural plate
relationship: develops_from UBERON:0006240
intersection_of: UBERON:0003075 ! neural plate
intersection_of: develops_from UBERON:0006240 ! future forebrain
relationship: develops_from UBERON:0006240 ! future forebrain
relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate
[Term]
id: UBERON:0009611
name: midbrain neural plate
xref: TAO:0007019
xref: ZFA:0007019
xref: ZFIN:ZDB-ANAT-070928-200
is_a: UBERON:0003075 ! neural plate
relationship: develops_from UBERON:0009616
intersection_of: UBERON:0003075 ! neural plate
intersection_of: develops_from UBERON:0009616 ! presumptive midbrain
relationship: develops_from UBERON:0009616 ! presumptive midbrain
relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate
[Term]
id: UBERON:0009612
name: forebrain midbrain boundary neural plate
xref: TAO:0007020
xref: ZFA:0007020
xref: ZFIN:ZDB-ANAT-070928-201
is_a: UBERON:0006800 {source="ZFA"} ! anatomical line
relationship: develops_from UBERON:0007288 {source="ZFA"} ! presumptive forebrain midbrain boundary
relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate
[Term]
id: UBERON:0009614
name: hindbrain neural plate
xref: TAO:0007022
xref: ZFA:0007022
xref: ZFIN:ZDB-ANAT-070928-203
is_a: UBERON:0003075 ! neural plate
relationship: develops_from UBERON:0007277
intersection_of: UBERON:0003075 ! neural plate
intersection_of: develops_from UBERON:0007277 ! presumptive hindbrain
relationship: develops_from UBERON:0007277 ! presumptive hindbrain
relationship: part_of UBERON:0003057 {source="ZFA"} ! chordal neural plate
[Term]
id: UBERON:0009615
name: midbrain hindbrain boundary neural plate
comment: todo: developmental relationships for lines
synonym: "MHB neural plate" EXACT [UBERON:cjm]
synonym: "midbrain-hindbrain boundary neural plate" EXACT [ZFA:0007044]
xref: TAO:0007044
xref: ZFA:0007044
xref: ZFIN:ZDB-ANAT-070928-225
is_a: UBERON:0007281 ! presumptive midbrain hindbrain boundary
relationship: part_of UBERON:0003075
intersection_of: UBERON:0009774 ! embryonic midbrain hindbrain boundary
intersection_of: part_of UBERON:0003075 ! neural plate
relationship: develops_from UBERON:0007281 {source="ZFA"} ! presumptive midbrain hindbrain boundary
relationship: part_of UBERON:0003075 {source="ZFA"} ! neural plate
relationship: part_of UBERON:0003075 ! neural plate
[Term]
id: UBERON:0009616
name: presumptive midbrain
synonym: "presumptive mesencephalon" EXACT [ZFA:0000148]
xref: TAO:0000148
xref: ZFA:0000148
is_a: UBERON:0006598 ! presumptive structure
relationship: develops_into UBERON:0001891
intersection_of: UBERON:0006598 ! presumptive structure
intersection_of: develops_into UBERON:0001891 ! midbrain
relationship: develops_from UBERON:0003080 ! anterior neural tube
relationship: develops_from UBERON:0010286 {source="ZFA"} ! midbrain neural tube
relationship: develops_into UBERON:0001891 ! midbrain
relationship: part_of UBERON:0006238 {source="ZFA"} ! future brain
[Term]
id: UBERON:0009617
name: head paraxial mesoderm
def: "Bilateral mesenchymal mesoderm parallel and immediately adjacent to the neural tube/notochord; it generates a subset of extra-ocular, and other head, muscles." [PMID:21610022]
synonym: "cephalic paraxial mesoderm" EXACT [UBERON:cjm]
synonym: "head paraxial mesenchyme" EXACT [EHDAA2:0000736]
xref: EHDAA2:0000736
xref: EHDAA:364
xref: EMAPA:16171
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0000926 {source="EHDAA2"} ! mesoderm
relationship: part_of UBERON:0003077 ! paraxial mesoderm
relationship: part_of UBERON:0005253 {source="EHDAA2"} ! head mesenchyme
[Term]
id: UBERON:0009618
name: trunk paraxial mesoderm
synonym: "trunk and cervical paraxial mesenchyme" EXACT [EHDAA2:0002094]
synonym: "trunk paraxial mesenchyme" RELATED []
xref: EHDAA2:0002094
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0000926 {source="EHDAA2"} ! mesoderm
relationship: part_of UBERON:0003077 ! paraxial mesoderm
relationship: part_of UBERON:0005256 {source="EHDAA2"} ! trunk mesenchyme
[Term]
id: UBERON:0009620
name: tail bud paraxial mesoderm
xref: EHDAA2:0003239
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
relationship: develops_from UBERON:0009618 {source="EHDAA2"} ! trunk paraxial mesoderm
relationship: part_of UBERON:0002533 {source="EHDAA2"} ! tail bud
relationship: part_of UBERON:0003077 ! paraxial mesoderm
[Term]
id: UBERON:0009621
name: tail somite
xref: AAO:0010383
xref: EMAPA:16860
xref: XAO:0003143
is_a: UBERON:0002329 ! somite
relationship: part_of UBERON:0002415
intersection_of: UBERON:0002329 ! somite
intersection_of: part_of UBERON:0002415 ! tail
relationship: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0009622
name: pronephric proximal straight tubule
def: "A proximal straight tubule that is part of a pronephros." [ZFIN:ZDB-PUB-071029-9]
xref: TAO:0002239
xref: ZFA:0001621
is_a: UBERON:0001290 ! proximal straight tubule
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002120
intersection_of: UBERON:0001290 ! proximal straight tubule
intersection_of: part_of UBERON:0002120 ! pronephros
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0009623
name: spinal nerve root
def: "The paired bundles of nerve fibers entering and leaving the spinal cord at each segment. The dorsal and ventral nerve roots join to form the mixed segmental spinal nerves. The dorsal roots are generally afferent, formed by the central projections of the spinal (dorsal root) ganglia sensory cells, and the ventral roots efferent, comprising the axons of spinal motor and autonomic preganglionic neurons. There are, however, some exceptions to this afferent/efferent rule." [MESH:A.08.800.800.720.725]
comment: ZFA has part_of to spinal cord but this causes spatial disjointness violations (CNS/PNS)
synonym: "root of spinal nerve" EXACT [FMA:14060]
synonym: "spinal neural root" EXACT [FMA:14060]
xref: FMA:14060
xref: GAID:717
xref: MESH:A.08.800.800.720.725
xref: ncithesaurus:Spinal_Nerve_Root
xref: SCTID:362436008
xref: ZFA:0005578
is_a: UBERON:0002211 {source="FMA"} ! nerve root
is_a: UBERON:0004732 ! segmental subdivision of nervous system
relationship: part_of UBERON:0001780
intersection_of: UBERON:0002211 ! nerve root
intersection_of: part_of UBERON:0001780 ! spinal nerve
relationship: part_of UBERON:0001780 {source="FMA"} ! spinal nerve
relationship: part_of UBERON:0001780 ! spinal nerve
[Term]
id: UBERON:0009624
name: lumbar nerve
def: "The lumbar nerves are the five spinal nerves emerging from the lumbar vertebrae. They are divided into posterior and anterior divisions." [Wikipedia:Lumbar_nerves]
synonym: "lumbar spinal nerve" EXACT [FMA:5861]
synonym: "nervi lumbales" RELATED LATIN [Wikipedia:Lumbar_nerves]
xref: FMA:5861
xref: http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png
xref: ncithesaurus:Lumbar_Nerve
xref: SCTID:361600002
is_a: UBERON:0001780 {source="FMA"} ! spinal nerve
[Term]
id: UBERON:0009625
name: sacral nerve
def: "The five sacral nerves emerge from the sacrum. Although the vertebral components of the sacrum are fused into a single bone, the sacral vertebrae are still used to number the sacral nerves. Posteriorly, they emerge from the posterior sacral foramina, and form the posterior branches of sacral nerves. Anteriorly, they emerge from the anterior sacral foramina, and contribute to the sacral plexus (S1-S4) and coccygeal plexus." [Wikipedia:Sacral_nerves]
synonym: "nervi sacrales" RELATED LATIN [Wikipedia:Sacral_nerves]
synonym: "sacral spinal nerve" EXACT [FMA:5862]
xref: FMA:5862
xref: http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png
xref: ncithesaurus:Sacral_Nerve
xref: SCTID:361601003
is_a: UBERON:0001780 {source="FMA"} ! spinal nerve
[Term]
id: UBERON:0009629
name: coccygeal nerve
def: "The coccygeal nerve is the spinal nerve that corresponds to the coccyx bone." [Wikipedia:Coccygeal_nerve]
synonym: "coccygeal spinal nerve" EXACT [FMA:5863]
synonym: "nervus coccygeus" RELATED LATIN [Wikipedia:Coccygeal_nerve]
xref: FMA:5863
xref: http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png
xref: ncithesaurus:Coccygeal_Nerve
xref: SCTID:287477006
is_a: UBERON:0001780 {source="FMA"} ! spinal nerve
[Term]
id: UBERON:0009630
name: root of thoracic nerve
synonym: "nerve root part of thoracic spinal cord" EXACT [NIF:NIF]
synonym: "thoracic nerve root" EXACT [FMA:14064]
synonym: "thoracic neural root" EXACT [FMA:14064]
xref: FMA:14064
xref: NIF_GrossAnatomy:birnlex_836
is_a: UBERON:0009623 ! spinal nerve root
relationship: part_of UBERON:0003726
intersection_of: UBERON:0009623 ! spinal nerve root
intersection_of: part_of UBERON:0003726 ! thoracic nerve
relationship: part_of UBERON:0003726 ! thoracic nerve
[Term]
id: UBERON:0009631
name: root of lumbar spinal nerve
synonym: "lumbar spinal nerve root" EXACT [FMA:16421]
synonym: "lumbar spinal neural root" EXACT [FMA:16421]
synonym: "nerve root part of lumbar spinal cord" EXACT [NIF:NIF]
xref: FMA:16421
xref: ncithesaurus:Lumbar_Spinal_Nerve_Root
xref: NIF_GrossAnatomy:birnlex_1613
xref: SCTID:180968005
is_a: UBERON:0009623 ! spinal nerve root
relationship: part_of UBERON:0009624
intersection_of: UBERON:0009623 ! spinal nerve root
intersection_of: part_of UBERON:0009624 ! lumbar nerve
relationship: part_of UBERON:0009624 ! lumbar nerve
[Term]
id: UBERON:0009632
name: root of cervical nerve
synonym: "cervical neural root" EXACT [FMA:16422]
synonym: "cervical spinal root" EXACT [FMA:16422]
synonym: "nerve root part of cervical spinal cord" EXACT [NIF:NIF]
synonym: "root of cervical spinal nerve" EXACT [FMA:16422]
xref: FMA:16422
xref: ncithesaurus:Cervical_Spinal_Nerve_Root
xref: NIF_GrossAnatomy:birnlex_955
xref: SCTID:180966009
is_a: UBERON:0009623 ! spinal nerve root
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000962 ! cervical nerve
[Term]
id: UBERON:0009633
name: root of sacral nerve
synonym: "nerve root part of sacral spinal cord" EXACT [NIF:NIF]
synonym: "root of sacral spinal nerve" EXACT [FMA:18028]
synonym: "sacral neural root" EXACT [FMA:18028]
xref: FMA:18028
xref: ncithesaurus:Sacral_Spinal_Nerve_Root
xref: NIF_GrossAnatomy:birnlex_1518
xref: SCTID:244454000
is_a: UBERON:0009623 ! spinal nerve root
relationship: part_of UBERON:0009625
intersection_of: UBERON:0009623 ! spinal nerve root
intersection_of: part_of UBERON:0009625 ! sacral nerve
relationship: part_of UBERON:0009625 ! sacral nerve
[Term]
id: UBERON:0009634
name: root of coccygeal nerve
synonym: "coccygeal neural root" EXACT [FMA:18131]
synonym: "coccygeal spinal nerve root" EXACT [FMA:18131]
synonym: "root of coccygeal spinal nerve" EXACT [FMA:18131]
xref: FMA:18131
is_a: UBERON:0009623 ! spinal nerve root
relationship: part_of UBERON:0009629
intersection_of: UBERON:0009623 ! spinal nerve root
intersection_of: part_of UBERON:0009629 ! coccygeal nerve
relationship: part_of UBERON:0009629 ! coccygeal nerve
[Term]
id: UBERON:0009635
name: parachordal cartilage
def: "Chondrocranium chondrification center that fuses with cartilages derived from sclerotome region of occipital somites forming occipital bone, hypoglossal canals and foramen magnum." [ISBN10:1588903958, UBERON:cjm]
synonym: "parachordal cartilages" EXACT PLURAL [ZFA:0001423]
xref: ncithesaurus:Parachordal_Cartilage
xref: TAO:0001423
xref: ZFA:0001423
property_value: UBPROP:0000001 "Rod-shaped paired cartilages on either side of the notochord. They unite, forming the base of the chondrocranium and are replaced by the prootic bones.[TAO]" xsd:string
is_a: UBERON:0003932 {source="ZFA"} ! cartilaginous element of chondrocranium
relationship: overlaps UBERON:0003110 {source="ZFA"} ! otic region
relationship: overlaps UBERON:0005902 {source="ZFA"} ! occipital region
[Term]
id: UBERON:0009636
name: prechordal cartilage
def: "Chondrocranium chondrification center that that forms anterior body of sphenoid, containing the sella turcica and posterior body of sphenoid." [ISBN10:1588903958, UBERON:cjm]
comment: classified as part of chondrocranium based on developmental relationships
is_a: UBERON:0003932 ! cartilaginous element of chondrocranium
[Term]
id: UBERON:0009637
name: alisphenoid ossification center
synonym: "alisphenoid center" RELATED []
is_a: UBERON:0010355 ! ossification center
[Term]
id: UBERON:0009638
name: orbitosphenoid ossification center
comment: merge with sphenoid lesser wing cartilage condensation?
synonym: "orbitosphenoid center" RELATED []
is_a: UBERON:0010355 ! ossification center
[Term]
id: UBERON:0009639
name: body of sphenoid
def: "The body of the sphenoid bone, more or less cubical in shape, is hollowed out in its interior to form two large cavities, the sphenoidal air sinuses, which are separated from each other by a septum." [Wikipedia:Body_of_sphenoid_bone]
synonym: "body of sphenoidal bone" EXACT [FMA:52867]
synonym: "central body of sphenoid" EXACT [FMA:52867]
synonym: "corpus (os sphenoidale)" EXACT [FMA:52867]
synonym: "corpus ossis sphenoidalis" RELATED LATIN [Wikipedia:Body_of_sphenoid_bone]
synonym: "sphenoid body" EXACT [FMA:52867]
xref: FMA:52867
xref: http://upload.wikimedia.org/wikipedia/commons/d/d5/Gray146.png
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0011164 ! neurocranium bone
relationship: develops_from UBERON:0009636 {source="ISBN10:1588903958"} ! prechordal cartilage
relationship: develops_from UBERON:0009640 {source="ISBN10:1588903958"} ! hypophyseal cartilage
relationship: part_of UBERON:0001677 {source="FMA"} ! sphenoid bone
relationship: part_of UBERON:0002241 {source="cjm"} ! chondrocranium
relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium
[Term]
id: UBERON:0009640
name: hypophyseal cartilage
def: "forms around the developing pituitary, and together with prechordal cartilages creates body of sphenoid bone" [ISBN10:1588903958]
comment: classified as part of chondrocranium based on developmental relationships
is_a: UBERON:0003932 ! cartilaginous element of chondrocranium
[Term]
id: UBERON:0009641
name: ansa lenticularis
def: "The ansa lenticularis (ansa lentiformis in older texts) is a part of the brain, making up the superior layer of the substantia innominata of Meynert. Its fibers, derived from the medullary lamina of the lentiform nucleus, pass medially to end in the thalamus and subthalamic region, while others are said to end in the tegmentum and red nucleus. It is classified by NeuroNames as part of the subthalamus." [Wikipedia:Ansa_lenticularis]
synonym: "ansa lenticularis in thalamo" EXACT [FMA:TA]
synonym: "ansa lenticularis in thalamus" EXACT [FMA:62070]
synonym: "ventral peduncle of lateral forebrain bundle" EXACT [FMA:62070]
xref: FMA:62070
xref: http://upload.wikimedia.org/wikipedia/commons/9/94/DA-loops_in_PD.jpg
xref: NIF_GrossAnatomy:nlx_anat_1010011
xref: SCTID:37467007
is_a: UBERON:0002730 ! regional part of thalamus
is_a: UBERON:0002791 {source="NIF_GrossAnatomy"} ! regional part of telencephalon
relationship: part_of UBERON:0001900 {source="FMA"} ! subthalamus
[Term]
id: UBERON:0009643
name: central tegmental tract
def: "The central tegmental tract is a structure in the midbrain and pons. The central tegmental tract includes ascending axonal fibers which arise from the rostral nucleus solitarius and terminate in the ventral posteromedial nucleus (VPM) of thalamus. Information from the thalamus will go to cortical taste area, namely the insula and frontal operculum. It also contains descending axonal fibers from the parvocellular red nucleus. The descending axons will project to the inferior olivary nucleus. This latter pathway will be used to connect the contralateral cerebellum." [Wikipedia:Central_tegmental_tract]
xref: FMA:83850
xref: http://upload.wikimedia.org/wikipedia/commons/f/f7/Midbrainsuperiorcolliculus.png
xref: NIF_GrossAnatomy:nlx_anat_1010012
xref: SCTID:369034000
is_a: UBERON:0007702 {source="FMA"} ! tract of brain
[Term]
id: UBERON:0009644
name: trachea non-cartilage connective tissue
xref: MA:0001859
is_a: UBERON:0003571 {source="MA"} ! trachea connective tissue
[Term]
id: UBERON:0009645
name: ampullary gland
def: "fusiform enlargement of the deferent duct, as it passes across the bladder wall, due to proliferation of glandular tissue in the regionally folded mucosa." [http://medical-dictionary.thefreedictionary.com/ampullary+gland]
xref: MA:0000400
xref: ncithesaurus:Ampullary_Gland
is_a: UBERON:0005399 {source="MA"} ! male reproductive gland
[Term]
id: UBERON:0009646
name: lumbar sympathetic nerve trunk
xref: MA:0001163
xref: ncithesaurus:Lumbar_Sympathetic_Nerve_Trunk
is_a: UBERON:0004295 ! sympathetic nerve trunk
relationship: part_of UBERON:0005462
intersection_of: UBERON:0004295 ! sympathetic nerve trunk
intersection_of: part_of UBERON:0005462 ! lower back
relationship: part_of UBERON:0005462 ! lower back
[Term]
id: UBERON:0009647
name: tympanic membrane epithelium
def: "One of the two epithelia which make up the tympanic membrane (along with the fibrous layer)" [PMID:11237469, UBERON:cjm]
synonym: "tympanic epithelium" EXACT [MA:0001224]
synonym: "tympanic membrane epithelial layer" EXACT []
xref: MA:0001224
xref: ncithesaurus:Tympanic_Epithelium
xref: SCTID:70839004
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0010071 ! layer of tympanic membrane
relationship: part_of UBERON:0002364
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002364 ! tympanic membrane
disjoint_from: UBERON:0010070 ! intermediate layer of tympanic membrane
relationship: part_of UBERON:0002364 ! tympanic membrane
[Term]
id: UBERON:0009648
name: eyelid subcutaneous connective tissue
xref: MA:0001252
xref: ncithesaurus:Eyelid_Subcutaneous_Connective_Tissue
is_a: UBERON:0003581 {source="MA"} ! eyelid connective tissue
[Term]
id: UBERON:0009650
name: cortical arch of kidney
synonym: "cortical arch" EXACT [MA:0001650]
xref: MA:0001650
xref: ncithesaurus:Cortical_Arch
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0002189 {source="MA"} ! outer cortex of kidney
[Term]
id: UBERON:0009651
name: nephron tubule basement membrane
synonym: "renal tubule basement membrane" EXACT [MA:0001680]
xref: MA:0001680
xref: ncithesaurus:Renal_Tubule_Basement_Membrane
is_a: UBERON:0005769 ! basement membrane
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001231
intersection_of: UBERON:0005769 ! basement membrane
intersection_of: part_of UBERON:0001231 ! nephron tubule
relationship: part_of UBERON:0001231 ! nephron tubule
relationship: part_of UBERON:0001231 {source="MA"} ! nephron tubule
[Term]
id: UBERON:0009652
name: bronchus basement membrane
xref: MA:0001832
xref: ncithesaurus:Bronchus_Basement_Membrane
is_a: UBERON:0003592 {source="MA"} ! bronchus connective tissue
is_a: UBERON:0005769 ! basement membrane
relationship: part_of UBERON:0002185
intersection_of: UBERON:0005769 ! basement membrane
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0009653
name: trachea basement membrane
xref: MA:0001854
xref: ncithesaurus:Trachea_Basement_Membrane
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005769 ! basement membrane
relationship: part_of UBERON:0003126
intersection_of: UBERON:0005769 ! basement membrane
intersection_of: part_of UBERON:0003126 ! trachea
relationship: part_of UBERON:0003126 ! trachea
relationship: part_of UBERON:0009644 {source="MA-modified"} ! trachea non-cartilage connective tissue
[Term]
id: UBERON:0009654
name: alveolar artery
comment: add child terms
xref: MA:0001913
xref: ncithesaurus:Alveolar_Artery
is_a: UBERON:0001637 {source="MA"} ! artery
[Term]
id: UBERON:0009655
name: auricular artery
comment: add child terms
xref: MA:0001918
xref: ncithesaurus:Auricular_Artery
is_a: UBERON:0001637 {source="MA"} ! artery
[Term]
id: UBERON:0009656
name: frontal artery
comment: insufficiently defined
is_obsolete: true
[Term]
id: UBERON:0009657
name: labial artery
comment: add child terms
xref: MA:0001987
xref: ncithesaurus:Labial_Artery
is_a: UBERON:0001637 {source="MA"} ! artery
[Term]
id: UBERON:0009658
name: pancreaticoduodenal artery
def: "." [Wikipedia:Pancreaticoduodenal_artery]
synonym: "arteriae pancreaticoduodenales" EXACT LATIN []
synonym: "pancreatico-duodenal artery" EXACT [MA:0002013]
xref: MA:0002013
xref: ncithesaurus:Pancreatico-Duodenal_Artery
is_a: UBERON:0001637 {source="MA"} ! artery
[Term]
id: UBERON:0009659
name: spermatic artery
comment: add child terms
xref: MA:0002040
xref: ncithesaurus:Spermatic_Artery
is_a: UBERON:0010192 ! genital artery
[Term]
id: UBERON:0009660
name: adrenal vein
xref: MA:0002081
xref: ncithesaurus:Adrenal_Vein
is_a: UBERON:0001638 {source="MA"} ! vein
[Term]
id: UBERON:0009661
name: midbrain nucleus
def: "Nucleus located in the midbrain." [ZFIN:curator]
xref: SCTID:279285003
xref: TAO:0002209
xref: ZFA:0001665
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002950 ! regional part of midbrain
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0009662
name: hindbrain nucleus
def: "Nucleus located within the hindbrain." [ZFIN:curator]
xref: TAO:0002177
xref: ZFA:0001658
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0002028
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0002028 ! hindbrain
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0009663
name: telencephalic nucleus
xref: TAO:0002178
xref: ZFA:0001660
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0001893
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0009664
name: gut mesentery
xref: EHDAA2:0004566
is_a: UBERON:0000477 {source="EHDAA2"} ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001179 {source="EHDAA2"} ! peritoneal cavity
[Term]
id: UBERON:0009668
name: ventral mesentery
xref: EHDAA2:0004569
xref: SCTID:361430000
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0009664 {source="EHDAA2"} ! gut mesentery
[Term]
id: UBERON:0009669
name: embryonic cloacal lumen
xref: EHDAA2:0004586
is_a: UBERON:0000464 {source="EHDAA2"} ! anatomical space
relationship: surrounded_by UBERON:0000163
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: surrounded_by UBERON:0000163 ! embryonic cloaca
relationship: surrounded_by UBERON:0000163 {source="EHDAA2"} ! embryonic cloaca
relationship: surrounded_by UBERON:0000163 ! embryonic cloaca
[Term]
id: UBERON:0009670
name: rectal lumen
synonym: "lumen of rectum" EXACT [FMA:14598]
xref: EHDAA2:0004587
xref: FMA:14598
xref: SCTID:259740004
is_a: UBERON:0000464 {source="EHDAA2"} ! anatomical space
relationship: surrounded_by UBERON:0001052
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: surrounded_by UBERON:0001052 ! rectum
relationship: develops_in UBERON:0009669 {source="EHDAA2"} ! embryonic cloacal lumen
relationship: surrounded_by UBERON:0001052 {source="EHDAA2"} ! rectum
relationship: surrounded_by UBERON:0001052 ! rectum
[Term]
id: UBERON:0009671
name: nasal fin
def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [DOI:10.1002/aja.1001500308]
xref: EHDAA2:0004548
is_a: UBERON:0004906 ! ectodermal gut
relationship: part_of UBERON:0002424 {source="EHDAA2"} ! oral epithelium
relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium
[Term]
id: UBERON:0009672
name: oronasal membrane
def: "The oronasal membrane separates the oral cavity and nasal cavity. In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity" [http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter24/custom3/deluxe-content.html]
comment: split into two?
synonym: "bucconasal membrane" EXACT [EHDAA:7840]
xref: EHDAA2:0000188
xref: EHDAA:7840
xref: EHDAA:7984
is_a: UBERON:0004906 ! ectodermal gut
relationship: develops_from UBERON:0009671 {source="EHDAA2"} ! nasal fin
relationship: part_of UBERON:0000166 {source="EHDAA2"} ! oral opening
relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium
[Term]
id: UBERON:0009673
name: accessory XI nerve cranial component
comment: Editors/usage notes: May be obsoleted in future. WP states: Traditional descriptions of the accessory nerve divide it into two parts: a spinal part and a cranial part.[1] But because the cranial component rapidly joins the vagus nerve and serves the same function as other vagal nerve fibers, modern descriptions often consider the cranial component part of the vagus nerve and not part of the accessory nerve proper.[2] Thus in contemporary discussions of the accessory nerve, the common practice is to dismiss the cranial part altogether, referring to the accessory nerve specifically as the spinal accessory nerve.
xref: EHDAA2:0000107
xref: EHDAA:5574
xref: EMAPA:17266
xref: MA:0001089
xref: VHOG:0001174
is_a: UBERON:0001785 ! cranial nerve
relationship: part_of UBERON:0002019 {source="MA"} ! accessory XI nerve
[Term]
id: UBERON:0009674
name: accessory XI nerve spinal component
xref: EHDAA2:0000108
xref: EHDAA:5576
xref: EMAPA:17160
xref: MA:0001090
xref: VHOG:0001115
is_a: UBERON:0001780 {source="MA"} ! spinal nerve
relationship: part_of UBERON:0002019 {source="EHDAA2"} ! accessory XI nerve
[Term]
id: UBERON:0009675
name: facial VII nerve chorda tympani branch
xref: EHDAA2:0000490
xref: EHDAA:3719
xref: EMAPA:18217
xref: MA:0001092
xref: VHOG:0001343
is_a: UBERON:0001647 ! facial nerve
relationship: part_of UBERON:0001647 {source="EHDAA2"} ! facial nerve
[Term]
id: UBERON:0009676
name: telencephalic vesicle
comment: todo - all vesicles
xref: EHDAA2:0001981
xref: EHDAA:1993
xref: EHDAA:2671
xref: EMAPA:16914
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0009678
name: tooth row
def: "Anatomical cluster consisting of adjacent teeth constituting a row." [ZFIN:curator]
synonym: "dental arcade" EXACT [FMA:59415]
synonym: "row of teeth" EXACT [UBERON:cjm]
synonym: "tooth rows" EXACT PLURAL [ZFA:0001642]
xref: FMA:59415
xref: TAO:0001667
xref: ZFA:0001642
is_a: UBERON:0003672 ! dentition
[Term]
id: UBERON:0009679
name: set of lower jaw teeth
synonym: "arcus dentalis inferior" EXACT [FMA:TA]
synonym: "lower dental arcade" EXACT [FMA:55635]
synonym: "lower jaw teeth" EXACT [EHDAA2:0001029]
synonym: "set of all lower teeth" EXACT [FMA:55635]
xref: EHDAA2:0001029
xref: FMA:55635
is_a: UBERON:0009678 ! tooth row
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0003278
intersection_of: UBERON:0009678 ! tooth row
intersection_of: part_of UBERON:0003278 ! skeleton of lower jaw
relationship: part_of UBERON:0003278 ! skeleton of lower jaw
[Term]
id: UBERON:0009680
name: set of upper jaw teeth
synonym: "arcus dentalis superior" EXACT [FMA:TA]
synonym: "set of all upper teeth" EXACT [FMA:55634]
synonym: "upper dental arcade" EXACT [FMA:55634]
synonym: "upper jaw teeth" EXACT [EHDAA2:0002129]
xref: EHDAA2:0002129
xref: FMA:55634
is_a: UBERON:0009678 ! tooth row
relationship: part_of UBERON:0003277
intersection_of: UBERON:0009678 ! tooth row
intersection_of: part_of UBERON:0003277 ! skeleton of upper jaw
relationship: part_of UBERON:0003277 ! skeleton of upper jaw
[Term]
id: UBERON:0009687
name: middle cardiac vein
synonym: "lesser cardiac vein" EXACT [FMA:4713]
synonym: "posterior interventricular vein" EXACT [FMA:4713]
xref: EHDAA2:0004509
xref: FMA:4713
xref: ncithesaurus:Middle_Cardiac_Vein
xref: SCTID:277729002
is_a: UBERON:0004148 {source="FMA"} ! coronary vein
[Term]
id: UBERON:0009688
name: posterior inferior cerebellar artery
synonym: "posterior inferior cerebellar artery" EXACT [EHDAA2:0000660]
xref: EHDAA2:0000660
xref: FMA:50518
xref: ncithesaurus:Posterior_Inferior_Cerebellar_Artery
xref: SCTID:244212001
is_a: UBERON:0004573 ! systemic artery
relationship: branch_of UBERON:0001535 {source="FMA"} ! vertebral artery
relationship: develops_from UBERON:0001535 {source="EHDAA2"} ! vertebral artery
relationship: part_of UBERON:0001535 {source="FMA"} ! vertebral artery
[Term]
id: UBERON:0009689
name: anterior inferior cerebellar artery
xref: EHDAA2:0000587
xref: FMA:50544
xref: ncithesaurus:Anterior_Inferior_Cerebellar_Artery
xref: SCTID:244213006
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003472 ! cerebellar artery
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: branch_of UBERON:0001633 {source="FMA"} ! basilar artery
relationship: develops_from UBERON:0001532 {source="EHDAA2"} ! internal carotid artery
relationship: develops_from UBERON:0001633 {source="EHDAA2"} ! basilar artery
relationship: part_of UBERON:0001633 {source="FMA"} ! basilar artery
relationship: part_of UBERON:0003472 {source="EHDAA2"} ! cerebellar artery
[Term]
id: UBERON:0009692
name: lumen of pharyngotympanic tube
comment: Editors note: Check relationships for conformance with AAO and XAO
synonym: "auditory tube lumen" EXACT [EHDAA2:0004118]
synonym: "lumen of auditory tube" EXACT [FMA:60079]
synonym: "lumen of eustachian tube" EXACT [FMA:60079]
synonym: "pharyngotympanic tube lumen" EXACT [FMA:60079]
xref: EHDAA2:0004118
xref: FMA:60079
is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen
relationship: continuous_with UBERON:0010060 ! pharyngeal opening of pharyngotympanic tube
relationship: developmentally_replaces UBERON:0005625 {source="EHDAA2/Kardong"} ! tubotympanic recess
relationship: surrounded_by UBERON:0002393 {source="FMA"} ! pharyngotympanic tube
relationship: surrounded_by UBERON:0010062 {source="cjm"} ! pharyngotympanic tube epithelium
[Term]
id: UBERON:0009695
name: epithelium of laryngopharynx
synonym: "epithelium of laryngeal pharynx" EXACT [FMA:62454]
synonym: "laryngopharynx epithelium" EXACT [FMA:62454]
xref: EHDAA2:0004575
xref: FMA:62454
is_a: UBERON:0003351 ! pharyngeal epithelium
relationship: develops_from UBERON:0007690 {source="EHDAA2"} ! early pharyngeal endoderm
relationship: part_of UBERON:0001051 {source="EHDAA2"} ! hypopharynx
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium
[Term]
id: UBERON:0009697
name: epithelium of appendix
synonym: "appendix epithelium" EXACT [FMA:63581]
synonym: "epithelium of vermiform appendix" EXACT [FMA:63581]
xref: EHDAA2:0004561
xref: FMA:63581
is_a: UBERON:0005636 ! caecum epithelium
is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac
is_a: UBERON:0009854 ! digestive tract diverticulum
relationship: develops_from UBERON:0005636 {source="EHDAA2"} ! caecum epithelium
relationship: part_of UBERON:0001154 {source="EHDAA2"} ! appendix
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium
relationship: part_of UBERON:0004989 {source="FMA"} ! mucosa of appendix
[Term]
id: UBERON:0009708
name: dorsal pancreas
subset: organ_slim
xref: EHDAA2:0001371
xref: FMA:79793
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland
is_a: UBERON:0002368 ! endocrine gland
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0010375 {source="EHDAA2"} ! pancreas dorsal primordium
relationship: has_developmental_contribution_from UBERON:0003923 {source="cjm"} ! dorsal pancreatic bud
relationship: part_of UBERON:0001264 {source="EHDAA2"} ! pancreas
[Term]
id: UBERON:0009709
name: ventral pancreas
subset: organ_slim
xref: EHDAA2:0001393
xref: FMA:79794
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland
is_a: UBERON:0002368 ! endocrine gland
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0010376 {source="EHDAA2"} ! pancreas ventral primordium
relationship: has_developmental_contribution_from UBERON:0003924 {source="cjm"} ! ventral pancreatic bud
relationship: part_of UBERON:0001264 {source="EHDAA2"} ! pancreas
[Term]
id: UBERON:0009712
name: endocardium of right ventricle
def: "Endocardium of ventricle which is continuous tricuspid valve, pulmonary valve and with the tunica intima of the pulmonary trunk." [FMA:9536]
synonym: "endocardial lining of right ventricle" RELATED [EMAPA:17341]
synonym: "right ventricular endocardium" EXACT [FMA:9536]
xref: EHDAA2:0002188
xref: EMAPA:17341
xref: FMA:9536
xref: SCTID:8911002
xref: VHOG:0001235
is_a: UBERON:0001081 ! endocardium of ventricle
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002080
intersection_of: UBERON:0001081 ! endocardium of ventricle
intersection_of: part_of UBERON:0002080 ! heart right ventricle
relationship: attaches_to UBERON:0006567 {source="FMA"} ! right ventricle myocardium
relationship: develops_from UBERON:0004706 {source="EHDAA2"} ! bulbus cordis
relationship: part_of UBERON:0002080 ! heart right ventricle
[Term]
id: UBERON:0009713
name: endocardium of left ventricle
def: "Endocardium of ventricle which is continuous with mitral valve , aortic valve, atrioventricular septum and the tunica intima of the aorta." [FMA:9559]
synonym: "endocardial lining of left ventricle" RELATED [EMAPA:17338]
synonym: "left ventricular endocardium" EXACT [FMA:9559]
xref: EHDAA2:0002182
xref: EMAPA:17338
xref: FMA:9559
xref: SCTID:191004004
xref: VHOG:0001233
is_a: UBERON:0001081 ! endocardium of ventricle
relationship: part_of UBERON:0002084
intersection_of: UBERON:0001081 ! endocardium of ventricle
intersection_of: part_of UBERON:0002084 ! heart left ventricle
relationship: attaches_to UBERON:0006566 {source="FMA"} ! left ventricle myocardium
relationship: develops_from UBERON:0006283 {source="EHDAA2"} ! primitive ventricle of heart
relationship: part_of UBERON:0002084 ! heart left ventricle
[Term]
id: UBERON:0009714
name: intermaxillary process
def: "the primordial mass of tissue formed by the merging of the medial nasal prominences of the embryo; it contributes to the intermaxillary portion of the upper jaw, the prolabial portion of the upper lip, and the primary palate." [http://www.medilexicon.com/medicaldictionary.php?s=intermaxillary+segment]
comment: Editors note: requires verification. Note EHDAA2 has this as coming from both lateral and medial prominences
synonym: "globular process" RELATED DEPRECATED [Wikipedia:Intermaxillary_segment]
synonym: "globular processes of his" RELATED DEPRECATED [Wikipedia:Intermaxillary_segment]
synonym: "intermaxillary segment" RELATED [Wikipedia:Intermaxillary_segment]
xref: EHDAA2:0000868
xref: EHDAA:7856
is_a: UBERON:0009292 ! embryonic nasal process
relationship: develops_from UBERON:0004067 {source="EHDAA2"} ! lateral nasal prominence
relationship: develops_from UBERON:0004068 {source="EHDAA2"} ! medial nasal prominence
relationship: part_of UBERON:0004066 {source="EHDAA2"} ! frontonasal prominence
[Term]
id: UBERON:0009715
name: stomodeal cavity
is_a: UBERON:0002553 ! anatomical cavity
relationship: surrounded_by UBERON:0000930
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: surrounded_by UBERON:0000930 ! stomodeum
relationship: surrounded_by UBERON:0000930 ! stomodeum
[Term]
id: UBERON:0009716
name: cupular organ
def: "Epithelial sense organ containing the cupula housing a gelatinous material elongated from the basement of the organ toward the atrial cavity. The basement of the cupular organ consists of two cell types: sensory cells and support cell" [DOI:10.2108/zsj.27.842]
comment: Homology: possible homologues of neuromasts in the inner ear (Bone & Ryan, 1978; Wada et al 1998). In the tunicate cupular organ, the sensory cell is a primary neuron sending an axon to the CNS. The sensory cilium is within a deep indentation of the cell and is surrounded by a collar of short microvilli.
is_a: UBERON:0000020 ! sense organ
[Term]
id: UBERON:0009717
name: coronal organ
def: "Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line." [DOI:10.1002/jez.b.21013]
subset: organ_slim
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0009720 ! oral siphon
[Term]
id: UBERON:0009718
name: neurohypophyseal duct
def: "Embryonic duct that is the rudiment of cerebral ganglion and and neural gland of adult in the ascidians." [DOI:10.1002/jez.b.21013]
comment: Homology: candidate homolog for both neural crest and for the combined olfactory and adenohypophyseal placodes (Burighel et al., 2003; Manni et al., 2004a). Development: During formation of the adult ascidian, the ectodermal neurohypophyseal duct fuses with an evagination of the pharynx to form the neural gland rudiment
property_value: "homologous_to" UBERON:0002196
property_value: "homologous_to" UBERON:0009122
is_a: UBERON:0000058 ! duct
[Term]
id: UBERON:0009719
name: siphon
def: "tubular appendage for drawing or ejecting fluids" []
xref: BTO:0002056
is_a: UBERON:0000026 ! appendage
relationship: develops_from UBERON:0009894 ! siphon primordium
[Term]
id: UBERON:0009720
name: oral siphon
synonym: "anterior buccal siphon" EXACT [ISBN:0030229073]
synonym: "branchial siphon" RELATED []
synonym: "buccal siphon" EXACT [ISBN:0030229073]
synonym: "pharyngeal siphon" RELATED []
property_value: foaf:depicted_by 32371:orig.jpg
is_a: UBERON:0009719 ! siphon
relationship: develops_from UBERON:0009896 ! oral siphon primordia
[Term]
id: UBERON:0009721
name: atrial siphon
is_a: UBERON:0009719 ! siphon
relationship: develops_from UBERON:0009895 ! atrial siphon primordia
[Term]
id: UBERON:0009722
name: entire pharyngeal arch endoderm
synonym: "pharyngeal arch endoderm" RELATED [EHDAA2:0004621]
xref: EHDAA2:0004621
is_a: UBERON:0000477 {source="EHDAA2"} ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium
[Term]
id: UBERON:0009731
name: sublaminar layers S3 or S4
def: "One of sublaminar layers S3 or S4." [GOC:plr]
xref: CP:0001040
is_a: UBERON:0008921 ! substratum of layer of retina
union_of: UBERON:0008924 ! sublaminar layer S3
union_of: UBERON:0008925 ! sublaminar layer S4
[Term]
id: UBERON:0009732
name: sublaminar layers S1 or S2 or S5
def: "One of sublaminar layers S1, S2, or S5." [GOC:plr]
xref: CP:0001041
is_a: UBERON:0008921 ! substratum of layer of retina
union_of: UBERON:0008922 ! sublaminar layer S1
union_of: UBERON:0008923 ! sublaminar layer S2
union_of: UBERON:0008926 ! sublaminar layer S5
[Term]
id: UBERON:0009733
name: sublaminar layers S1 or S2 or S3
def: "One of sublaminar layers S1, S2, or S3." [GOC:plr]
xref: CP:0001042
is_a: UBERON:0008921 ! substratum of layer of retina
union_of: UBERON:0008922 ! sublaminar layer S1
union_of: UBERON:0008923 ! sublaminar layer S2
union_of: UBERON:0008924 ! sublaminar layer S3
[Term]
id: UBERON:0009734
name: sublaminar layers S2 or S3 or S4
def: "One of sublaminar layers S2, S3, or S4." [GOC:plr]
xref: CP:0001043
is_a: UBERON:0008921 ! substratum of layer of retina
union_of: UBERON:0008923 ! sublaminar layer S2
union_of: UBERON:0008924 ! sublaminar layer S3
union_of: UBERON:0008925 ! sublaminar layer S4
[Term]
id: UBERON:0009735
name: sublaminar layers S1 or S3 or S4
def: "One of sublaminar layers S1, S3, or S4." [GOC:plr]
xref: CP:0001044
is_a: UBERON:0008921 ! substratum of layer of retina
union_of: UBERON:0008922 ! sublaminar layer S1
union_of: UBERON:0008924 ! sublaminar layer S3
union_of: UBERON:0008925 ! sublaminar layer S4
[Term]
id: UBERON:0009736
name: sublaminar layers S3 or S4 or S5
def: "One of sublaminar layers S3, S4, or S5." [GOC:plr]
xref: CP:0001045
is_a: UBERON:0008921 ! substratum of layer of retina
union_of: UBERON:0008924 ! sublaminar layer S3
union_of: UBERON:0008925 ! sublaminar layer S4
union_of: UBERON:0008926 ! sublaminar layer S5
[Term]
id: UBERON:0009737
name: sublaminar layers S1 or S2 or S3 or S4
def: "One of sublaminar layers S1, S2, S3, or S4." [GOC:plr]
xref: CP:0001046
is_a: UBERON:0008921 ! substratum of layer of retina
union_of: UBERON:0008922 ! sublaminar layer S1
union_of: UBERON:0008923 ! sublaminar layer S2
union_of: UBERON:0008924 ! sublaminar layer S3
union_of: UBERON:0008925 ! sublaminar layer S4
[Term]
id: UBERON:0009738
name: border of sublaminar layers S1 and S2
def: "The region extending out from the boundary between layers S1 and S2." [GOC:plr, UBERON:cjm]
xref: CP:0001038
is_a: UBERON:0009740 ! border between sublaminar layers
relationship: overlaps UBERON:0008922
relationship: overlaps UBERON:0008923
intersection_of: UBERON:0009740 ! border between sublaminar layers
intersection_of: overlaps UBERON:0008922 ! sublaminar layer S1
intersection_of: overlaps UBERON:0008923 ! sublaminar layer S2
relationship: overlaps UBERON:0008922 ! sublaminar layer S1
relationship: overlaps UBERON:0008923 ! sublaminar layer S2
relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2
[Term]
id: UBERON:0009739
name: border of sublaminar layers S3 and S4
def: "The region extending out from the boundary between sublaminar layers S3 and S4." [GOC:plr, UBERON:cjm]
xref: CP:0001039
is_a: UBERON:0009740 ! border between sublaminar layers
relationship: overlaps UBERON:0008924
relationship: overlaps UBERON:0008925
intersection_of: UBERON:0009740 ! border between sublaminar layers
intersection_of: overlaps UBERON:0008924 ! sublaminar layer S3
intersection_of: overlaps UBERON:0008925 ! sublaminar layer S4
relationship: overlaps UBERON:0008924 ! sublaminar layer S3
relationship: overlaps UBERON:0008925 ! sublaminar layer S4
relationship: part_of UBERON:0009731 ! sublaminar layers S3 or S4
[Term]
id: UBERON:0009740
name: border between sublaminar layers
def: "A region of the retina corresponding to a portion of two adjacent substratum layers." [UBERON:cjm]
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: overlaps UBERON:0008921 ! substratum of layer of retina
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0009741
name: tailbud stage
def: "Any of the developmental stages from Nieuwkoop and Faber stage 20 to stage 44 (feeding), including the beginning of hatching (NF stage 35/36)." [ISBN:0815318960]
xref: XAO:1000007
is_a: UBERON:0000068 {source="XAO"} ! embryo stage
[Term]
id: UBERON:0009742
name: proamniotic cavity
def: "the cavity of the developing embryo that is formed within the epiblast tissue prior to the closing of the proamniotic canal by the amniotic folds" [MP:0011197]
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0009743
name: visceral yolk sac cavity
def: "the closed space containing the yolk, formed by the fusion of the edges of the embryonic epiblast (hypoblast) and later surrounded by the visceral yolk sac (hypoblast and visceral yolk sac mesoderm)" [MP:0011201]
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0005251 ! yolk sac cavity
relationship: part_of UBERON:0008852
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: part_of UBERON:0008852 ! visceral yolk sac
relationship: part_of UBERON:0008852 ! visceral yolk sac
[Term]
id: UBERON:0009744
name: lymph node medullary sinus
def: "the channels in the lymph node medulla that separate the medullary cords and are crossed by a reticulum of cells and fibers and bounded by littoral cells; lymph flows through the medullary sinus from the cortical sinuses and into the efferent lymphatic vessels" [MP:0011222]
is_a: UBERON:0004111 ! anatomical conduit
relationship: part_of UBERON:0002007 ! medulla of lymph node
[Term]
id: UBERON:0009745
name: lymph node medullary cord
def: "the dense rope-like structures of lymphatic tissue located between the medullary sinuses in the medulla of a lymph node" [MP:0011224]
is_a: UBERON:0000061 ! anatomical structure
relationship: adjacent_to UBERON:0009744 ! lymph node medullary sinus
relationship: part_of UBERON:0002007 ! medulla of lymph node
[Term]
id: UBERON:0009746
name: head fold
def: "the crescent-shaped, ventrally located fold of the embryonic disc at the future cephalic end of the developing embryo" [MP:0011257]
xref: SCTID:361453004
is_a: UBERON:0005291 ! embryonic tissue
[Term]
id: UBERON:0009747
name: tail fold
def: "the crescent-shaped, ventrally located fold of the embryonic disc at the future caudal end of the developing embryo" [MP:0011258]
xref: SCTID:361439004
is_a: UBERON:0005291 ! embryonic tissue
[Term]
id: UBERON:0009748
name: cephalic neural fold
def: "the elevated margins of the neural groove that are located in the future cephalic region of the embryo" [MP:0011259]
xref: EMAPA:16090
is_a: UBERON:0005062 ! neural fold
[Term]
id: UBERON:0009749
name: limb mesenchyme
def: "the primordial embryonic connective tissue of the developing limbs, autopods and digits, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to limb connective tissue, bone and musculature in conjunction with myotome cells." [MP:0011261]
synonym: "limb mesoderm" RELATED [Geisha:syn]
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0002101
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0003285 ! limb of embryo
[Term]
id: UBERON:0009750
name: spleen mesenchyme
def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing spleen" [MP:0011263]
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
relationship: part_of UBERON:0002106
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0009751
name: cardiac mesenchyme
def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing cardiac structures" [MP:0011264]
comment: Editor note: decide whether to merge with cardiac mesoderm. Check start/end stages
xref: EHDAA2:0004162
is_a: UBERON:0000477 {source="EHDAA2"} ! anatomical cluster
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000948
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0009752
name: pancreas mesenchyme
def: "the embryonic connective tissue made up of loosely aggregated mesenchymal cells, supported by interlaminar jelly, that gives rise to the developing pancreas" [MP:0011265]
is_a: UBERON:0005256 ! trunk mesenchyme
relationship: part_of UBERON:0001264
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001264 ! pancreas
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0009753
name: adrenal gland cortex zone
synonym: "region of adrenal cortex" RELATED [FMA:69086]
xref: FMA:69086
xref: MA:0001887
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001235 {source="MA"} ! adrenal cortex
[Term]
id: UBERON:0009754
name: blubber
def: "a thick layer of vascularized adipose tissue found under the skin of all cetaceans, pinnipeds and sirenians." [Wikipedia:Blubber]
comment: Lipid-rich, collagen fiber–laced blubber comprises the hypodermis and covers the whole body, except for parts of the appendages, strongly attached to the musculature and skeleton by highly organized, fan-shaped networks of tendons and ligaments. It can comprise up to 50% of the body mass of some marine mammals during some points in their lives, and can range from two inches (5 cm) thick in dolphins and smaller whales, to more than 12 inches (30 cm)thick in some bigger whales, such as right and bowhead whales
xref: SCTID:83953006
is_a: UBERON:0002190 {source="Wikipedia"} ! subcutaneous adipose tissue
[Term]
id: UBERON:0009755
name: spermaceti
def: "wax present in the head cavities of the sperm whale." [Wikipedia:Spermaceti]
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0009756
name: spermaceti organ
subset: organ_slim
is_a: UBERON:0000062 ! organ
relationship: secretes UBERON:0009755
intersection_of: UBERON:0000062 ! organ
intersection_of: secretes UBERON:0009755 ! spermaceti
relationship: part_of UBERON:0000033 ! head
relationship: secretes UBERON:0009755 ! spermaceti
[Term]
id: UBERON:0009757
name: ambergris
def: "a biliary secretion of the intestines of the sperm whale." [Wikipedia:Ambergris]
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0009758
name: abdominal ganglion
xref: SCTID:280508003
is_a: UBERON:0007134 ! trunk ganglion
relationship: part_of UBERON:0002417
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
relationship: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0009767
name: proximal interphalangeal joint
synonym: "PIJ joint" NARROW [Wikipedia:Interphalangeal_articulations_of_the_hand]
synonym: "PIP joint" NARROW [Wikipedia:Interphalangeal_articulations_of_the_hand]
xref: FMA:65022
is_a: UBERON:0006658 ! inter-phalangeal joint
relationship: connects UBERON:0004302
intersection_of: UBERON:0006658 ! inter-phalangeal joint
intersection_of: connects UBERON:0004302 ! proximal phalanx
relationship: connects UBERON:0004301 ! middle phalanx
relationship: connects UBERON:0004302 ! proximal phalanx
[Term]
id: UBERON:0009768
name: distal interphalangeal joint
synonym: "DIJ joint" NARROW [Wikipedia:Interphalangeal_articulations_of_the_hand]
synonym: "DIP joint" NARROW [Wikipedia:Interphalangeal_articulations_of_the_hand]
xref: FMA:65024
is_a: UBERON:0006658 ! inter-phalangeal joint
relationship: connects UBERON:0004300
intersection_of: UBERON:0006658 ! inter-phalangeal joint
intersection_of: connects UBERON:0004300 ! distal phalanx
relationship: connects UBERON:0004300 ! distal phalanx
relationship: connects UBERON:0004301 ! middle phalanx
[Term]
id: UBERON:0009769
name: left common cardinal vein
comment: Taxon notes: the left duct atrophies at metamorphosis in the lamprey (22)[PMID:20959416, S1]
synonym: "common cardinal vein left " EXACT [EHDAA2:0000304]
xref: EHDAA2:0000304
xref: FMA:70311
xref: SCTID:361506000
is_a: UBERON:0002064 {source="FMA"} ! common cardinal vein
relationship: part_of UBERON:0004344 {source="EHDAA2"} ! cardinal vein
[Term]
id: UBERON:0009770
name: precardinal vein
xref: FMA:70309
is_a: UBERON:0001638 {source="EHDAA2"} ! vein
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0004344 {source="EHDAA2-generalized"} ! cardinal vein
[Term]
id: UBERON:0009771
name: precardinal vein left
synonym: "left precardinal vein" EXACT [FMA:70313]
xref: EHDAA2:0000127
xref: FMA:70313
is_a: UBERON:0009770 {source="FMA"} ! precardinal vein
[Term]
id: UBERON:0009772
name: precardinal vein right
synonym: "right precardinal vein" EXACT [FMA:70312]
xref: EHDAA2:0004537
xref: FMA:70312
is_a: UBERON:0009770 {source="FMA"} ! precardinal vein
[Term]
id: UBERON:0009773
name: renal tubule
def: "A renal tubule is a tube that filters, re-absorbs and secretes substances to rid an organism of waste and to play a role in fluid homeostasis." [GO:0061333, GOC:dph, GOC:mtg_kidney_jan10]
subset: grouping_class
synonym: "renal tubule (generic)" EXACT [UBERON:cjm]
synonym: "tubule of excretory system" EXACT [OBOL:automatic, UBERON:cjm]
is_a: UBERON:0003914 ! epithelial tube
is_a: UBERON:0006555 ! excretory tube
relationship: part_of UBERON:0001008 ! excretory system
[Term]
id: UBERON:0009774
name: embryonic midbrain hindbrain boundary
comment: merge with presumptive midbrain hindbrain boundary?
is_a: UBERON:0006800 {source="ZFA"} ! anatomical line
relationship: part_of UBERON:0006238 ! future brain
[Term]
id: UBERON:0009775
name: lateral medullary reticular complex
synonym: "lateral group of medullary reticular formation" EXACT [FMA:72573]
synonym: "lateral medullary reticular group" EXACT [FMA:72573]
synonym: "lateral reticular formation of the medulla oblongata" EXACT [FMA:72573]
xref: FMA:72573
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007245 {source="FMA"} ! nuclear complex of neuraxis
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002559 {source="FMA"} ! medullary reticular formation
[Term]
id: UBERON:0009776
name: intermediate reticular formation
def: "." [https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413098&group_id=36855]
xref: TAO:0000219
xref: ZFA:0000219
is_a: UBERON:0003528 ! brain grey matter
is_a: UBERON:0007245 {source="UBERON:cjm"} ! nuclear complex of neuraxis
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002559 {source="GOC:pr", source="brainspan.org"} ! medullary reticular formation
[Term]
id: UBERON:0009777
name: intermediate reticular nucleus
xref: ABA:IRN
xref: FMA:84336
is_a: UBERON:0002579 ! regional part of medullary reticular formation
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0009776
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0009776 ! intermediate reticular formation
relationship: part_of UBERON:0009776 ! intermediate reticular formation
[Term]
id: UBERON:0009778
name: pleural sac
def: "Serous sac, which has as parts the pleura and the pleural cavity. Examples: There are only two canonical instances, right and left pleural sacs." [FMA:9690]
xref: FMA:9690
xref: SCTID:361996004
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005906 {source="FMA"} ! serous sac
relationship: part_of UBERON:0001558 {source="FMA"} ! lower respiratory tract
[Term]
id: UBERON:0009779
name: cardiac muscle tissue of right auricle
synonym: "cardiac muscle of right auricular region" EXACT [EMAPA:16826]
synonym: "left atrium auricular region heart muscle" EXACT [EHDAA2:0004168]
xref: EHDAA2:0004168
xref: EMAPA:16826
xref: EMAPA:17324
xref: FMA:84280
xref: VHOG:0000611
is_a: UBERON:0003378 {source="FMA"} ! cardiac muscle of auricular region
is_a: UBERON:0003379 ! cardiac muscle of right atrium
relationship: part_of UBERON:0006631
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0006631 ! right atrium auricular region
relationship: part_of UBERON:0006631 ! right atrium auricular region
[Term]
id: UBERON:0009780
name: cardiac muscle tissue of left auricle
synonym: "cardiac muscle of left auricular region" EXACT [EMAPA:16818]
synonym: "right atrium auricular region heart muscle" EXACT [EHDAA2:0004169]
xref: EHDAA2:0004169
xref: EMAPA:16818
xref: EMAPA:17318
xref: FMA:84281
is_a: UBERON:0003378 {source="FMA"} ! cardiac muscle of auricular region
is_a: UBERON:0003380 ! cardiac muscle of left atrium
relationship: part_of UBERON:0006630
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0006630 ! left atrium auricular region
relationship: part_of UBERON:0006630 ! left atrium auricular region
[Term]
id: UBERON:0009834
name: dorsolateral prefrontal cortex
def: "The dorsolateral prefrontal cortex (DL-PFC or DLPFC), according to a more restricted definition, is roughly equivalent to Brodmann areas 9 and 46.[1] According to a broader definition DL-PFC consists of the lateral portions of Brodmann areas 9 – 12, of areas 45, 46, and the superior part of area 47.[2] These regions mainly receive their blood supply from the middle cerebral artery. With respect to neurotransmitter systems, there is evidence that dopamine plays a particularly important role in DL-PFC.[2]DL-PFC is connected to the orbitofrontal cortex, and to a variety of brain areas, which include the thalamus, parts of the basal ganglia (the dorsal caudate nucleus), the hippocampus, and primary and secondary association areas of neocortex, including posterior temporal, parietal, and occipital areas" [Wikipedia:Dorsolateral_prefrontal_cortex]
comment: check dorsolateral prefrontal neocortex
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: overlaps UBERON:0006483 ! brodmann (1909) area 46
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0009835
name: anterior cingulate cortex
def: "the frontal part of the cingulate cortex, that resembles a 'collar' form around the corpus callosum, the fibrous bundle that relays neural signals between the right and left cerebral hemispheres of the brain. It includes both the ventral and dorsal areas of the cingulate cortex, and appears to play a role in a wide variety of autonomic functions, such as regulating blood pressure and heart rate, as well as rational cognitive functions, such as reward anticipation, decision-making, empathy[1] and emotion." [Wikipedia:Anterior_cingulate_cortex]
xref: BTO:0004249
xref: http://upload.wikimedia.org/wikipedia/commons/2/22/Gray727_anterior_cingulate_cortex.png
xref: NIF_GrossAnatomy:birnlex_936
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0003027 {source="BTO"} ! cingulate cortex
[Term]
id: UBERON:0009836
name: fronto-orbital gyrus
synonym: "fronto-orbital gyrus" EXACT [NIF_GrossAnatomy:birnlex_1243]
synonym: "orbito-frontal gyrus" EXACT []
synonym: "orbitofrontal gyrus" EXACT []
xref: NIF_GrossAnatomy:birnlex_1243
is_a: UBERON:0007193 {source="NIF"} ! orbital gyrus
relationship: part_of UBERON:0004167 ! orbitofrontal cortex
[Term]
id: UBERON:0009840
name: lower rhombic lip
def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [ZFIN:curator]
synonym: "caudal rhombic lip" EXACT [UBERON:cjm]
xref: TAO:0001441
xref: ZFA:0001441
is_a: UBERON:0002616 ! regional part of brain
relationship: overlaps UBERON:0005507 {source="ZFA"} ! rhombomere 3
relationship: overlaps UBERON:0005511 {source="ZFA"} ! rhombomere 4
relationship: overlaps UBERON:0005515 {source="ZFA"} ! rhombomere 5
relationship: overlaps UBERON:0005519 {source="ZFA"} ! rhombomere 6
relationship: overlaps UBERON:0005523 {source="ZFA"} ! rhombomere 7
relationship: overlaps UBERON:0005527 {source="ZFA"} ! rhombomere 8
relationship: overlaps UBERON:0005569 {source="ZFA"} ! rhombomere 2
relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip
[Term]
id: UBERON:0009841
name: upper rhombic lip
def: "Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary." [ZFIN:curator]
synonym: "cerebellar anlage" EXACT [ZFA:0001442]
synonym: "presumptive cerebellum" EXACT [ZFA:0001442]
synonym: "rostral rhombic lip" EXACT [DHB:URL]
xref: TAO:0001442
xref: ZFA:0001442
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002616 ! regional part of brain
relationship: adjacent_to UBERON:0003052 {source="ZFA-def"} ! midbrain-hindbrain boundary
relationship: part_of UBERON:0005499 {source="ZFA"} ! rhombomere 1
relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip
[Term]
id: UBERON:0009842
name: acinus
def: "An acinus refers to any cluster of cells that resembles a many-lobed \"berry,\" such as a raspberry (acinus is Latin for berry). The berry-shaped termination of an exocrine gland, where the secretion is produced is acinar in form, as is the alveolar sac containing multiple alveoli in the lungs." [Wikipedia:Acinus]
synonym: "acini" RELATED PLURAL [Wikipedia:Acinus]
synonym: "glandular acinus" RELATED []
xref: FMA:55588
xref: http://upload.wikimedia.org/wikipedia/commons/9/99/Gray1105.png
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0009843
name: prostate epithelial cord
def: "A solid cord of prostate epithelium." [GO:0060527, OBOL:automatic, PMID:18977204]
comment: Complexity is conferred on the prostate during a postnatal development phase known as branching morphogenesis. Solid cords of prostate epithelium formed in utero elongate postnatally and their tips are bifurcated into primary, secondary, and tertiary branches in a pattern that is unique for each prostate lobe. Branching morphogenesis proceeds differentially for each of the three mouse prostate lobes (ventral, dorsolateral, and anterior) and is completed by about postnatal day 20 in mice, providing each lobe with unique glandular architecture [5]. It is important to note that the developing human prostate undergoes a similar series of morphogenetic events especially during prostatic bud formation, but gives rise to a mature glandular prostate that is unique from the rodent and features peripheral, central, and transitional zones[PMID:18977204]
synonym: "cord of prostate epithelium" EXACT [PMID:18977204]
synonym: "epithelial cord of prostate" EXACT []
is_a: UBERON:0000428 ! prostate epithelium
is_a: UBERON:0005154 ! epithelial cord
relationship: part_of UBERON:0002367
intersection_of: UBERON:0005154 ! epithelial cord
intersection_of: part_of UBERON:0002367 ! prostate gland
relationship: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0009844
name: urogenital sinus lumen
xref: EHDAA2:0002142
is_a: UBERON:0000464 ! anatomical space
relationship: surrounded_by UBERON:0000164
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: surrounded_by UBERON:0000164 ! primitive urogenital sinus
relationship: develops_in UBERON:0009669 {source="EHDAA2"} ! embryonic cloacal lumen
relationship: surrounded_by UBERON:0000164 {source="EHDAA2"} ! primitive urogenital sinus
relationship: surrounded_by UBERON:0000164 ! primitive urogenital sinus
[Term]
id: UBERON:0009845
name: urogenital sinus mesenchyme
comment: Androgen receptor (AR) activation releases instructive signals from UGM that acts on UGS epithelium (UGE) to stimulate cell proliferation, form prostate ductal progenitors (prostatic buds), and regulate cell adhesion dynamics to permit prostatic bud outgrowth
synonym: "UGM" EXACT [PMID:18977204]
xref: EHDAA2:0004061
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0009503 ! associated mesenchyme of hindgut
relationship: part_of UBERON:0000164
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000164 ! primitive urogenital sinus
relationship: part_of UBERON:0000164 ! primitive urogenital sinus
[Term]
id: UBERON:0009846
name: embryonic cloacal epithelium
synonym: "cloacal epithelium" EXACT [EHDAA2:0004585]
xref: EHDAA2:0004585
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0003353 ! epithelium of hindgut
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0000163
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000163 ! embryonic cloaca
relationship: develops_from UBERON:0003353 {source="EHDAA2"} ! epithelium of hindgut
relationship: part_of UBERON:0000163 ! embryonic cloaca
relationship: part_of UBERON:0003929 {source="EHDAA2"} ! gut epithelium
[Term]
id: UBERON:0009847
name: prostate field
def: "a specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop." [GO:0060515, GOC:dph, PMID:18977204]
synonym: "prostate primordium" EXACT []
is_a: UBERON:0004902 ! urogenital sinus epithelium
relationship: induced_by UBERON:0009845 {source="PMID:18977204"} ! urogenital sinus mesenchyme
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0004902 {source="PMID:18977204"} ! urogenital sinus epithelium
[Term]
id: UBERON:0009848
name: zona limitans intrathalamica
def: "A narrow stripe of cells that lies between the prospective dorsal and ventral thalami. This boundary contains signals that pattern the prethalamic and thalamic territories of the future mid-diencephalon." [GO:0022006, GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:11425897, PMID:16452095, Wikipedia:Zona_limitans_intrathalamica]
synonym: "ZLI" EXACT [GO:0022006]
xref: TAO:0001344
xref: ZFA:0001344
property_value: UBPROP:0000001 "The border between the dorsal and ventral thalamus.[TAO]" xsd:string
is_a: UBERON:0006800 ! anatomical line
relationship: adjacent_to UBERON:0001900
relationship: adjacent_to UBERON:0004703
intersection_of: UBERON:0006800 ! anatomical line
intersection_of: adjacent_to UBERON:0001900 ! subthalamus
intersection_of: adjacent_to UBERON:0004703 ! dorsal thalamus
relationship: adjacent_to UBERON:0001900 ! subthalamus
relationship: adjacent_to UBERON:0004703 ! dorsal thalamus
[Term]
id: UBERON:0009849
name: tadpole stage
def: "wholly aquatic larval stage in the life cycle of an amphibian, particularly of a frog or toad[WP]. XAO: The stages from feeding to the end of metamorphosis. Encompasses Weisz's first-form tadpole (equivalent to NF stages 45 to 49), second-form tadpole (NF 49 to 56) and third-form tadpole (NF 56 to 60-plus) stages." [ISBN:0471209627, ISSN:0003-276X, Wikipedia:Tadpole]
xref: XAO:1000008
is_a: UBERON:0000069 ! larval stage
[Term]
id: UBERON:0009850
name: nematode larva
is_a: UBERON:0002548 ! larva
relationship: existence_starts_and_ends_during UBERON:0004729
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_starts_and_ends_during UBERON:0004729 ! nematode larval stage
relationship: existence_starts_and_ends_during UBERON:0004729 ! nematode larval stage
[Term]
id: UBERON:0009851
name: border of sublaminar layers S4 and S5
def: "The intersection of sublaminar layers S4 and S5." [GOC:tfm]
is_a: UBERON:0009740 ! border between sublaminar layers
relationship: overlaps UBERON:0008925
relationship: overlaps UBERON:0008926
intersection_of: UBERON:0009740 ! border between sublaminar layers
intersection_of: overlaps UBERON:0008925 ! sublaminar layer S4
intersection_of: overlaps UBERON:0008926 ! sublaminar layer S5
relationship: overlaps UBERON:0008925 ! sublaminar layer S4
relationship: overlaps UBERON:0008926 ! sublaminar layer S5
relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5
[Term]
id: UBERON:0009852
name: border of sublaminar layers S2 and S3
def: "The intersection of sublaminar layers S2 and S3." [GOC:tfm]
is_a: UBERON:0009740 ! border between sublaminar layers
relationship: overlaps UBERON:0008923
relationship: overlaps UBERON:0008924
intersection_of: UBERON:0009740 ! border between sublaminar layers
intersection_of: overlaps UBERON:0008923 ! sublaminar layer S2
intersection_of: overlaps UBERON:0008924 ! sublaminar layer S3
relationship: overlaps UBERON:0008923 ! sublaminar layer S2
relationship: overlaps UBERON:0008924 ! sublaminar layer S3
relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3
[Term]
id: UBERON:0009853
name: body of uterus
def: "that part of the uterus above the isthmus and below the orifices of the uterine tubes." [http://medical-dictionary.thefreedictionary.com/corpus+uteri]
synonym: "corpus uteri" EXACT [UBERON:cjm]
synonym: "uterine body" EXACT [FMA:17739]
synonym: "uterine corpus" EXACT [FMA:17739]
xref: FMA:17739
xref: ncithesaurus:Corpus_Uteri
xref: SCTID:279878007
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000995 {source="FMA"} ! uterus
[Term]
id: UBERON:0009854
name: digestive tract diverticulum
def: "Branch or outpocketing of the digestive tract." [UBERON:cjm]
synonym: "diverticulum of gut" RELATED [FBbt:00100316]
synonym: "intestinal pouch" RELATED []
xref: FBbt:00100316
is_a: UBERON:0004921 ! subdivision of digestive tract
is_a: UBERON:0009856 ! sac
relationship: part_of UBERON:0001555
intersection_of: UBERON:0009856 ! sac
intersection_of: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0009855
name: echinoderm gastric caecum
def: "non-contractile pouch that is connected to the anterior stomach through a slit-like opening. This pouch is also well-connected to the haemal system through numerous haemal ducts within its connective tissue layer." [PMID:20955602]
comment: The digestive tract of many metazoan invertebrates is characterized by the presence of caeca or diverticula that serve secretory and/or absorptive functions. With the development of various feeding habits, distinctive digestive organs may be present in certain taxa. This also holds true for sea urchins (Echinodermata: Echinoidea), in which a highly specialized gastric caecum can be found in members of a derived subgroup, the Irregularia (cake urchins, sea biscuits, sand dollars, heart urchins, and related forms)... Homologous with the more or less pronounced dilation of the anterior stomach that is observed in most "regular" sea urchin taxa[PMID:20955602]
is_a: UBERON:0009854 ! digestive tract diverticulum
[Term]
id: UBERON:0009856
name: sac
synonym: "diverticulum" RELATED []
synonym: "pouch" EXACT []
xref: galen:Diverticulum
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0009857
name: cavum septum pellucidum
def: "Space enclosed within the laminae of the septum pelludicum, the membranous partition that seperates the frontal horns of the ventricle. contains cerebrospinal fluid (CSF) that filters from the ventricles through the septal laminae. bounded anteriorly by the genu of the corpus callosum; superiorly by the body of the corpus callosum; posteriorly by the anterior limb and pillars of the fornix; inferiorly by the anterior commissure and the rostrum of the corpus callosum; and laterally by the leaflets of the septum pellucidum. In humans, present in 100% of fetuses, but over 85% of them fuse by 3–6 months after birth." [BTO:0003447, Wikipedia:Cave_of_septum_pellucidum]
synonym: "cave of septum pellucidum" EXACT [FMA:61874]
synonym: "cavum of septum pellucidum" EXACT [FMA:61874]
synonym: "cavum septi pellucidi" RELATED [Wikipedia:Cave_of_septum_pellucidum]
synonym: "cavum septi pellucidi" RELATED LATIN [Wikipedia:Cave_of_septum_pellucidum]
synonym: "fifth ventricle" RELATED [FMA:61874, Wikipedia:Cave_of_septum_pellucidum]
synonym: "septum pellucidum cave" EXACT [FMA:61874]
synonym: "ventriculus septi pellucidi" EXACT [FMA:61874]
xref: BTO:0003447
xref: FMA:61874
xref: http://upload.wikimedia.org/wikipedia/commons/7/7d/CavumSeptumPellucidumDiagram.jpg
xref: ncithesaurus:Fifth_Ventricle
xref: SCTID:180933005
is_a: UBERON:0002553 ! anatomical cavity
relationship: surrounded_by UBERON:0004714
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: surrounded_by UBERON:0004714 ! septum pellucidum
relationship: surrounded_by UBERON:0004714 {source="FMA-modified"} ! septum pellucidum
relationship: surrounded_by UBERON:0004714 ! septum pellucidum
[Term]
id: UBERON:0009858
name: outer fibrous layer of periosteum
synonym: "capsular layer of periosteum" EXACT [FMA:234354]
synonym: "fibrous layer of periosteum" EXACT [FMA:234354]
synonym: "outer fibrous layer of periosteum" EXACT [FMA:234354]
xref: FMA:234354
is_a: UBERON:0000158 ! membranous layer
relationship: part_of UBERON:0002515 {source="FMA"} ! periosteum
[Term]
id: UBERON:0009859
name: endosteum
def: "a thin layer of connective tissue that lines the surface of the bony tissue that forms the medullary cavity of long bones" [Wikipedia:Endosteum]
xref: FMA:32692
xref: http://upload.wikimedia.org/wikipedia/commons/9/94/Illu_long_bone.jpg
xref: ncithesaurus:Endosteum
xref: SCTID:57487002
is_a: UBERON:0000158 ! membranous layer
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0009860
name: ascidian digestive gland
xref: ANISEED:1239655
property_value: foaf:depicted_by 32371:orig.jpg
is_a: UBERON:0006925 ! digestive gland
[Term]
id: UBERON:0009861
name: ascidian neural complex
def: "." [PMID:21558186]
is_a: UBERON:0002530 ! gland
[Term]
id: UBERON:0009862
name: ascidian cerebral ganglion
comment: the CG appears to be a diencephalic brain. It originates mainly from the posterior sensory vesicle (Takamura 2002; Dufour et al. 2006) and shows endocrine activity. For examples, ascidian genes orthologous to GnRH and OT/VP, which are secreted from the hypothalamus and the NH, respectively, in vertebrates, are expressed in the cortex of the CG, suggesting that the NC is not distinctly compartmentalized as are vertebrate brains (Tsutsui et al. 1998; Kavanaugh et al. 2005; Kawada et al. 2008; Ukena et al. 2008; Kawada et al. 2009). Moreover, PC2 expression in the cortex of the CG supports possible endocrine activity (Sekiguchi et al. 2007).
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0009861 ! ascidian neural complex
[Term]
id: UBERON:0009863
name: ascidian ciliated funnel
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0009861 ! ascidian neural complex
[Term]
id: UBERON:0009864
name: ascidian neural gland
comment: assumed to be a pituitary homolog. Current data from the Ciona genome suggests that the ascidian NC, including the CF, is unlikely to be a pituitary-like endocrine gland, while it is necessary to examine other ascidians before drawing a final conclusion [PMID:21558186]
property_value: "homologous_to" UBERON:0002196
is_a: UBERON:0000064 ! organ part
relationship: develops_from UBERON:0009718 ! neurohypophyseal duct
relationship: part_of UBERON:0009861 ! ascidian neural complex
[Term]
id: UBERON:0009865
name: Hatschek's pit
def: "a deep ciliated fossa on the dorsal midline of the buccal cavity (the region of the gut behind the mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]." [Wikipedia:Hatschek's_pit]
property_value: "homologous_to" UBERON:0002196
is_a: UBERON:0006846 ! groove
relationship: develops_from UBERON:0009868 ! Hatschek's left diverticulum
relationship: develops_from UBERON:0009957 ! ciliated pit
[Term]
id: UBERON:0009866
name: Hatschek's nephridium
def: "an unpaired kidney whose duct opens into the anterior pharynx. It can be seen as a deep ciliated fossa on the dorsal midline of the buccal cavity (mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]." []
subset: organ_slim
is_a: UBERON:0000062 ! organ
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001008 ! excretory system
[Term]
id: UBERON:0009867
name: Hatschek's diverticulum
is_a: UBERON:0001048 ! primordium
relationship: part_of UBERON:0008814 ! pharyngeal system
[Term]
id: UBERON:0009868
name: Hatschek's left diverticulum
is_a: UBERON:0009867 ! Hatschek's diverticulum
relationship: in_left_side_of UBERON:0000468
intersection_of: UBERON:0009867 ! Hatschek's diverticulum
intersection_of: in_left_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0009869
name: Hatschek's right diverticulum
is_a: UBERON:0009867 ! Hatschek's diverticulum
relationship: in_right_side_of UBERON:0000468
intersection_of: UBERON:0009867 ! Hatschek's diverticulum
intersection_of: in_right_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_right_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0009870
name: zone of stomach
def: "A division of the stomach. The stomach can be divided based on mucosal histology (glandular epithelium and gastric glands) and the relative position and type of gastric gland." [ISBN10:0073040584, Wikipedia:Stomach#Sections]
comment: Editor notes: We follow Kardong in defining stomach regions by gland, but we also include 'body of stomach'. In future we may want to have different partitions of the stomach
synonym: "gastric zone" EXACT [FMA:14558]
synonym: "region of stomach" EXACT []
synonym: "section of stomach" EXACT []
xref: FMA:14558
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Regions_of_stomach.svg/500px-Regions_of_stomach.svg.png
xref: SCTID:245415005
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0000945 {source="Obol"} ! stomach
[Term]
id: UBERON:0009871
name: nephrogenic zone
def: "outer portion of the renal cortex. Site of formation of medullary and cortical elements." []
comment: Taxon notes: see PMID:12761251 for description of nephrogenic zone in dogfish.
synonym: "nephrogenic tissue" RELATED []
xref: EMAPA:27721
xref: http://www.gudmap.org/Images/Organ_Summaries/Metanephros/NZ.png
xref: MA:0002996
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0009877
name: metapodium region
def: "Intermediate segment of the autopod, between the mesopodial region and and acropodial region. Examples: metacarpal region, metatarsal region" [MA:th, UBERON:cjm]
comment: Naming conventions for pod terms under discussion within phenoscape group. Editors note: considering adding 'acropodial region'
synonym: "metacarpal or metatarsal part of limb" EXACT []
synonym: "metacarpus/metatarsus" RELATED []
synonym: "metacarpus/metatarsus region" EXACT []
synonym: "metapodial segment" EXACT []
synonym: "metapodium" RELATED []
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002470 {source="MA:th"} ! autopod region
relationship: proximally_connected_to UBERON:0006716 ! mesopodium region
[Term]
id: UBERON:0009878
name: mesopodium skeleton
def: "The collection of all skeletal elements in a mesopodium. Examples: the tarsal skeleton, the carpal skeleton" [UBERON:cjm]
synonym: "basipodium" RELATED [VSAO:0005022, VSAO:NI]
synonym: "basipodium skeleton" EXACT [VSAO:0005022, VSAO:NI]
synonym: "carpal/tarsal skeleton" EXACT []
synonym: "mesopodial skeleton" EXACT [VSAO:0005022]
synonym: "mesopodium" RELATED [VSAO:0005022, VSAO:NI]
synonym: "mesopodium skeleton" EXACT []
xref: VSAO:0005022
property_value: UBPROP:0000001 "Limb skeleton subdivision consisting of endochondral bones increasing the freedom of movement of the autopodia, and located between zeugopodia and autopodia.[VSAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: transitively_connected_to subdivision of skeleton (UBERON:0010912)[VSAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: transitively_distally_connected_to subdivision of skeleton (UBERON:0010912)[VSAO]" xsd:string
is_a: UBERON:0010712 ! limb skeleton subdivision
relationship: subdivision_of UBERON:0006716
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0006716 ! mesopodium region
relationship: distally_connected_to UBERON:0010546 ! metapodium skeleton
relationship: part_of UBERON:0006716 ! mesopodium region
relationship: part_of UBERON:0006717 ! skeleton of autopod
relationship: proximally_connected_to UBERON:0011584 ! zeugopodial skeleton
relationship: subdivision_of UBERON:0006716 ! mesopodium region
[Term]
id: UBERON:0009879
name: tarsal skeleton
def: "Set of endochondral bones of the hindlimb increasing freedom of movement of the autopodium and located between the zeugopodium (tibia and fibula) and the metapodium (metatarsals)." [VSAO:0005024, Wikipedia:Tarsus_(skeleton)]
comment: AO notes: we assume MA:tarsus belongs here, as there is a distinct class MA:ankle, with the tarsal bone being part of the former. XAO:tarsus is part of the hindlimb skeleton. FMA set-of class lacks definition but we assume this to be equivalent.
synonym: "basipodium" RELATED [VSAO:0005024]
synonym: "hind mesopodium" RELATED []
synonym: "hind mesopodium skeleton" RELATED []
synonym: "mesopodium" RELATED [VSAO:0005024]
synonym: "set of tarsal bones" EXACT [FMA:71339]
synonym: "tarsus" RELATED [XAO:0003211]
xref: AAO:0000220
xref: EMAPA:25072
xref: FMA:71339
xref: GAID:1223
xref: MA:0000050
xref: SCTID:264228001
xref: SCTID:361796005
xref: VHOG:0001160
xref: VSAO:0005024
xref: XAO:0003211
property_value: UBPROP:0000001 "Segment of the leg corresponding to the tarsus. It consists of several elements that articulate with the tibia and fibula at one end and the metatarsals at the other end.[AAO]" xsd:string
is_a: UBERON:0009878 ! mesopodium skeleton
relationship: subdivision_of UBERON:0004454
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0004454 ! tarsal region
relationship: distally_connected_to UBERON:0010545 ! metatarsus skeleton
relationship: part_of UBERON:0001445 ! skeleton of foot
relationship: part_of UBERON:0004454 ! tarsal region
relationship: proximally_connected_to UBERON:0010720 ! hindlimb zeugopod skeleton
relationship: subdivision_of UBERON:0004454 ! tarsal region
[Term]
id: UBERON:0009880
name: carpal skeleton
def: "In tetrapods, the carpals is the sole cluster of the bones in the wrist between the radius and ulna and the metacarpus. The bones of the carpus do not belong to individual fingers (or toes in quadrupeds), whereas those of the metacarpus do. The corresponding part of the foot is the tarsus. The carpal bones allow the wrist to move and rotate vertically, horizontally and laterally. In human anatomy, the main role of the carpus is to facilitate effective positioning of the hand and powerful use of the extensors and flexors of the forearm, but the mobility of individual carpal bones increase the freedom of movements at the wrist. [WP,unvetted]." [Wikipedia:Carpus]
comment: AO notes: we assume MA:carpus belongs here, as there is a distinct class MA:wrist, with the carpal bone being part of the former. XAO:carpus is part of the forelimb skeleton. FMA set-of class lacks definition but we assume this to be equivalent. Taxon notes: The structure of the carpus varies widely between different groups of tetrapods, even among those that retain the full set of five digits. In primitive fossil amphibians, such as Eryops, the carpus consists of three rows of bones; a proximal row of three carpals, a second row of four bones, and a distal row of five bones. The proximal carpals are referred to as the radiale, intermediale, and ulnare, after their proximal articulations, and are homologous with the scaphoid, lunate, and triquetal bones respectively. The remaining bones are simply numbered, as the first to fourth centralia (singular: centrale), and the first to fifth distal carpals. Primitively, each of the distal bones appears to have articulated with a single metacarpal. However, the vast majority of later vertebrates, including modern amphibians, have undergone varying degrees of loss and fusion of these primitive bones, resulting in a smaller number of carpals. Almost all mammals and reptiles, for example, have lost the fifth distal carpal, and have only a single centrale - and even this is missing in humans. The pisiform bone is somewhat unusual, in that it first appears in primitive reptiles, and is never found in amphibians. Because many tetrapods have less than five digits on the forelimb, even greater degrees of fusion are common, and a huge array of different possible combinations are found. The wing of a modern bird, for example, has only two remaining carpals; the radiale (the scaphoid of mammals) and a bone formed from the fusion of four of the distal carpals. In some macropods, the scaphoid and lunar bones are fused into the scaphollunar bone[14] [Wikipedia:Carpus#Evolutionary_variations]
synonym: "carpal bones" EXACT [EMAPA:25056, FMA:71335]
synonym: "carpal bones set" EXACT [FMA:71335]
synonym: "carpus" RELATED [MA:0000040, XAO:0003207]
synonym: "fore mesopodium" RELATED [AAO:0000201]
synonym: "fore mesopodium skeleton" EXACT []
synonym: "ossa carpi" EXACT []
synonym: "ossa carpi" RELATED LATIN [Wikipedia:Carpus]
synonym: "set of carpal bones" RELATED [FMA:71335]
synonym: "skeleton of carpus" EXACT []
xref: AAO:0000201
xref: EMAPA:25056
xref: FMA:71335
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/58/Carpus.svg/200px-Carpus.svg.png
xref: MA:0000040
xref: VHOG:0001161
xref: VSAO:0005023
xref: XAO:0003207
property_value: UBPROP:0000001 "Segment of the forearm corresponding to the carpus. It consists of several elements that articulate with the radius and ulna at one end and the metacarpals at the other end.[AAO]" xsd:string
is_a: UBERON:0009878 ! mesopodium skeleton
relationship: subdivision_of UBERON:0004452
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0004452 ! carpal region
relationship: distally_connected_to UBERON:0010544 ! metacarpus skeleton
relationship: part_of UBERON:0001442 ! skeleton of hand
relationship: part_of UBERON:0004452 ! carpal region
relationship: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton
relationship: subdivision_of UBERON:0004452 ! carpal region
[Term]
id: UBERON:0009881
name: anterior lateral plate mesoderm
synonym: "ALPM" EXACT [ZFA:0005041]
xref: TAO:0005041
xref: ZFA:0005041
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm
[Term]
id: UBERON:0009882
name: anal column
def: "One of a number of vertical folds, produced by an infolding of the mucous membrane and some of the muscular tissue in the upper half of the lumen of the anal canal. They are named after Giovanni Battista Morgagni who also has several other eponyms named after himself[WP]" [Wikipedia:Anal_columns]
synonym: "column of Morgagni" EXACT [FMA:15713]
synonym: "columnae anales" RELATED LATIN [Wikipedia:Anal_columns]
xref: FMA:15713
xref: http://upload.wikimedia.org/wikipedia/commons/1/17/Gray1078.png
xref: ncithesaurus:Anal_Column
xref: SCTID:245444007
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000159 ! anal canal
[Term]
id: UBERON:0009883
name: medullary ray
def: "A renal, cortical lobule, consisting of the ascending or descending limbs of the loop of Henle or of the collecting tubules; medullary rays are regions where parallel arrays of straight tubules travel perpendicular to the capsule and extend from the cortex to the medulla." [MP:0011347, Wikipedia:Bone_marrow_of_ovaryry_ray_(anatomy)]
comment: Termonology notes: Their name is potentially misleading -- the "medullary" refers to their destination, not their location. They are located only in the renal cortex, and not in the renal medulla. AO notes: FMA says parenchyma, MP says cortex
synonym: "Ferrein's pyramid" EXACT [MP:0011347]
synonym: "kidney medullary ray" EXACT [MP:0011347]
synonym: "renal medullary ray" EXACT [MP:0011347]
xref: BTO:0001155
xref: FMA:74299
is_a: UBERON:0000064 {source="FMA"} ! organ part
is_a: UBERON:0006554 ! urinary system structure
relationship: overlaps UBERON:0001231 ! nephron tubule
relationship: part_of UBERON:0001225 {source="MP"} ! cortex of kidney
[Term]
id: UBERON:0009885
name: interlobar artery
def: "One of a set of curved arteries at the corticomedullary border of the kidney that arise from the interlobar arteries and give rise to the interlobular arteries." [MP:0011315, Wikipedia:Interlobar_arteries]
comment: FMA only has the set term
synonym: "arteriae interlobares renis" EXACT PLURAL [FMA:TA]
synonym: "arteriae interlobares renis" RELATED LATIN [Wikipedia:Interlobar_arteries]
synonym: "interlobar artery of kidney" EXACT [FMA:71637]
synonym: "kidney interlobar artery" EXACT []
synonym: "renal interlobar artery" EXACT [MP:0011355]
xref: FMA:71637
xref: http://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png
xref: SCTID:62802007
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0009887
name: interlobar vein
def: "The interlobar veins are veins of the renal circulation which drain the renal lobes." [Wikipedia:Interlobar_veins]
comment: FMA only has the set term
synonym: "interlobar vein of kidney" EXACT [FMA:71631]
synonym: "venae interlobares renis" EXACT PLURAL [FMA:TA]
synonym: "venae interlobares renis" RELATED LATIN [Wikipedia:Interlobar_veins]
xref: FMA:71631
xref: http://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0009888
name: Koller's sickle
def: "a local thickening of cells that acts as a margin separating sheets of cells from posterior margin of avian blastoderms from hypoblasts as they migrate anteriorly to push primary hypoblast cells anteriorly to form a secondary hypoblast known as the endoblast" [PMID:9693154, Wikipedia:Koller's_sickle]
subset: early_development
synonym: "Kohler's sickle" EXACT []
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0009889
name: secondary heart field
def: "extra-cardiac population of mesodermal progenitors that gives rise to the right ventricle and outflow tract." [PMID:17276708]
comment: Taxon notes: "In general, the two studies in chick concluded that the contribution of the SHF was to the outflow tract, whereas the mouse work suggested that the second lineage contributed more broadly to the heart, including the outflow tract and much or all of the right ventricle [11–14]. These different conclusions may represent differences in the experimental approaches used or may represent bona fide differences in the contribution of the second lineage to the hearts of birds compared to mammals [11]. Alternatively, the secondary/anterior heart fields described in the chick may represent a subset of a broader field that makes a more substantial contribution to the heart, as the mouse studies suggested" [PMID:17276708]
synonym: "anterior heart field" EXACT [PMID:17276708]
synonym: "anterior/second heart field" EXACT [Geisha:syn]
synonym: "second heart field" EXACT [XAO:0004186]
synonym: "SHF" RELATED [XAO:0004186]
xref: XAO:0004186
is_a: UBERON:0005291 ! embryonic tissue
relationship: anterior_to UBERON:0004140 {source="PMID:17276708"} ! heart field
relationship: dorsal_to UBERON:0004140 {source="PMID:17276708"} ! heart field
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0009890
name: anterior intestinal portal
def: "opening of the foregut into the midgut" [http://www.drugs.com/dict/fovea-cardiaca.html]
synonym: "fovea cardiaca" EXACT [http://www.drugs.com/dict/fovea-cardiaca.html]
is_a: UBERON:0004111 ! anatomical conduit
relationship: adjacent_to UBERON:0001041 ! foregut
relationship: adjacent_to UBERON:0001046 ! hindgut
[Term]
id: UBERON:0009891
name: facial mesenchyme
synonym: "face mesenchyme" EXACT []
synonym: "mesenchyme of face" EXACT []
is_a: UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0001456
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0009892
name: ascidian anterior sensory vesicle
xref: ANISEED:777309
is_a: UBERON:0000020 ! sense organ
[Term]
id: UBERON:0009893
name: ascidian ocellus
xref: ANISEED:874489
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0009892 ! ascidian anterior sensory vesicle
[Term]
id: UBERON:0009894
name: siphon primordium
xref: ANISEED:1210451
is_a: UBERON:0005423 ! developing anatomical structure
[Term]
id: UBERON:0009895
name: atrial siphon primordia
xref: ANISEED:1210456
is_a: UBERON:0009894 ! siphon primordium
[Term]
id: UBERON:0009896
name: oral siphon primordia
xref: ANISEED:1225922
is_a: UBERON:0009894 ! siphon primordium
[Term]
id: UBERON:0009897
name: right auditory cortex
xref: FMA:242654
is_a: UBERON:0001393 ! auditory cortex
relationship: in_left_side_of UBERON:0000955
intersection_of: UBERON:0001393 ! auditory cortex
intersection_of: in_left_side_of UBERON:0000955 ! brain
relationship: in_left_side_of UBERON:0000955 ! brain
[Term]
id: UBERON:0009898
name: left auditory cortex
xref: FMA:242656
is_a: UBERON:0001393 ! auditory cortex
relationship: in_right_side_of UBERON:0000955
intersection_of: UBERON:0001393 ! auditory cortex
intersection_of: in_right_side_of UBERON:0000955 ! brain
relationship: in_right_side_of UBERON:0000955 ! brain
[Term]
id: UBERON:0009899
name: pole of cerebral hemisphere
def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole." [Wikipedia:Poles_of_cerebral_hemispheres]
synonym: "polus frontalis, polus occipitalis, polus temporalis" RELATED LATIN [Wikipedia:Poles_of_cerebral_hemispheres]
xref: http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001869 ! cerebral hemisphere
[Term]
id: UBERON:0009906
name: root of optic nerve
comment: TODO - check. See comments for optic tract. FMA also has medial root.
synonym: "optic nerve root" EXACT [NIF_GrossAnatomy:birnlex_1328]
synonym: "optic tract root" EXACT [FMA:84573]
synonym: "root of optic tract" EXACT [FMA:84573]
xref: FMA:84573
xref: NIF_GrossAnatomy:birnlex_1328
is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve
relationship: continuous_with UBERON:0004904
intersection_of: UBERON:0002211 ! nerve root
intersection_of: continuous_with UBERON:0004904 ! nerve connecting eye with brain
relationship: continuous_with UBERON:0004904 ! nerve connecting eye with brain
[Term]
id: UBERON:0009907
name: sensory root of trigeminal nerve
synonym: "radix sensoria (nervus trigeminus [v])" EXACT [FMA:52611]
xref: FMA:52611
xref: SCTID:280188009
is_a: UBERON:0004673 {source="FMA"} ! trigeminal nerve root
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0002342 {source="Wikipedia"} ! neural crest
[Term]
id: UBERON:0009908
name: caudal root of abducens nerve
synonym: "radix caudalis nervi abducentis" EXACT [ZFA:0000179]
xref: TAO:0000179
xref: ZFA:0000179
is_a: UBERON:0002786 ! abducens nerve fibers
is_a: UBERON:0004732 ! segmental subdivision of nervous system
relationship: part_of UBERON:0001646 {source="ZFA"} ! abducens nerve
[Term]
id: UBERON:0009909
name: rostral root of abducens nerve
xref: TAO:0000665
xref: ZFA:0000665
is_a: UBERON:0002786 ! abducens nerve fibers
is_a: UBERON:0004732 ! segmental subdivision of nervous system
relationship: part_of UBERON:0001646 {source="ZFA"} ! abducens nerve
[Term]
id: UBERON:0009910
name: posterior lateral plate mesoderm
synonym: "PLPM" EXACT [ZFA:0005042]
xref: TAO:0005042
xref: ZFA:0005042
is_a: UBERON:0000926 {source="ZFA"} ! mesoderm
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm
[Term]
id: UBERON:0009911
name: lobule
xref: FMA:45737
xref: ncithesaurus:Lobule
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0009912
name: anatomical lobe
xref: FMA:45728
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0009913
name: renal lobe
def: "the portion of a kidney consisting of a renal medullary pyramid and the renal cortex above it[MP]. It is composed of many renal lobules[WP]." [MP:0011381, Wikipedia:Renal_lobe]
comment: Edtor note: todo - add has_part relationships. Taxon notes: human kidneys have multilobar (multipyramidal) architecture while mice and rats have unilobar (unipyramidal) kidneys[MP]
synonym: "kidney lobe" EXACT [MP:0011381]
synonym: "lobi renales" RELATED LATIN [Wikipedia:Renal_lobe]
synonym: "lobi renalis" EXACT PLURAL [Wikipedia:Renal_lobe]
synonym: "lobus renalis" EXACT [http://www.mondofacto.com/facts/dictionary?lobus+renalis]
xref: FMA:17881
xref: http://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png
xref: ncithesaurus:Kidney_Lower_Lobe
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0009912 ! anatomical lobe
relationship: part_of UBERON:0002113
intersection_of: UBERON:0009912 ! anatomical lobe
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0009914
name: renal lobule
def: "the portion of a renal lobe consisting of nephrons grouped around a single medullary ray and draining into a single collecting duct; human kidneys have multilobular, multipapillary architecture while mice and rats have unilobular, unipapillary kidneys" [MP:0011382, Wikipedia:Cortical_lobule]
comment: Alternate definition: One of the subdivisions of the kidney, consisting of a medullary ray and that portion of the convoluted port (renal corpuscles and convoluted tubules) associated with its collecting duct. -http://www.mondofacto.com/facts/dictionary?lobulus+corticalis+renalis
synonym: "cortical lobule" RELATED [MP:0011382, Wikipedia:Cortical_lobule]
synonym: "cortical lobule of kidney" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis]
synonym: "kidney lobule" EXACT [MP:0011382]
synonym: "lobuli corticales renis" RELATED LATIN [Wikipedia:Cortical_lobule]
synonym: "lobulus corticalis renalis" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis]
synonym: "lobulus renalis" EXACT []
synonym: "renal cortical lobule" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis]
synonym: "renculus" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis]
synonym: "reniculus" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis]
synonym: "renunculus" RELATED [http://www.mondofacto.com/facts/dictionary?lobus+renalis]
xref: FMA:17670
xref: SCTID:361330004
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0009911 ! lobule
relationship: part_of UBERON:0002113
intersection_of: UBERON:0009911 ! lobule
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0009913 {source="FMA"} ! renal lobe
[Term]
id: UBERON:0009916
name: wall of ureter
synonym: "ureteral wall" EXACT [FMA:15888]
xref: FMA:15888
xref: SCTID:279397004
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000056
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0000056 ! ureter
[Term]
id: UBERON:0009917
name: kidney corticomedullary boundary
def: "the region demarcating the renal medulla from the surrounding cortex; end-stage renal failure may be associated with loss of the normal corticomedullary boundary" [MP:0011376]
xref: NEW_MP:0011376
is_a: UBERON:0000015 ! anatomical boundary
relationship: adjacent_to UBERON:0000362
relationship: adjacent_to UBERON:0001225
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0000362 ! renal medulla
intersection_of: adjacent_to UBERON:0001225 ! cortex of kidney
relationship: adjacent_to UBERON:0000362 ! renal medulla
relationship: adjacent_to UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0002113 {source="MP"} ! kidney
[Term]
id: UBERON:0009918
name: retrotrapezoid nucleus
def: "the loose collection of neurons that reside in the rostral medulla close to the medullary surface, ventral and immediately caudal of nVII, that are crucial for CO2 sensing in the brain" [MP:0011406]
xref: NEW_MP:0011406
is_a: UBERON:0007635 ! nucleus of medulla oblongata
relationship: part_of UBERON:0001896 {source="MP"} ! medulla oblongata
[Term]
id: UBERON:0009919
name: ureter smooth muscle
def: "the smooth muscle tissue surrounding the epithelium of the ureter" [MP:0011426]
synonym: "ureteral smooth muscle" EXACT [NEW_MP:0011426]
synonym: "ureteral smooth muscle layer" EXACT [EMAPA:28844]
xref: EMAPA:28844
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0000056
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0006855 ! ureter muscle layer
[Term]
id: UBERON:0009920
name: optic neural crest
xref: EHDAA2:0001315
xref: EHDAA:1122
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
is_a: UBERON:0007530 {source="EHDAA2"} ! migrating mesenchyme population
relationship: part_of UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest
[Term]
id: UBERON:0009921
name: hypophyseal tube
is_a: UBERON:0000025 ! tube
[Term]
id: UBERON:0009948
name: clavicular air sac
xref: SCTID:2574004
is_a: UBERON:0009060 ! air sac
[Term]
id: UBERON:0009949
name: humeral diverticulum of clavicular air sac
xref: SCTID:2574004
is_a: UBERON:0009060 ! air sac
relationship: continuous_with UBERON:0009948 ! clavicular air sac
[Term]
id: UBERON:0009950
name: olfactory bulb plexiform layer
comment: check if the NIF class is actually a grouping class
synonym: "plexiform layer" BROAD [NIF_GrossAnatomy:nlx_anat_20090405]
xref: NIF_GrossAnatomy:nlx_anat_20090405
is_a: UBERON:0004001 {source="NIF_GrossAnatomy"} ! olfactory bulb layer
relationship: part_of UBERON:0002264 ! olfactory bulb
[Term]
id: UBERON:0009951
name: main olfactory bulb
def: "The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP]." [Wikipedia:Olfactory_bulb#Main_olfactory_bulb]
xref: ABA:MOB
property_value: "spatially_disjoint_from" UBERON:0002266
property_value: "spatially_disjoint_from" UBERON:0002590
property_value: "spatially_disjoint_from" UBERON:0002893
property_value: "spatially_disjoint_from" UBERON:0004069
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0002264 {source="cjm"} ! olfactory bulb
[Term]
id: UBERON:0009952
name: subgranular zone
def: "a narrow layer of cells located between the granule cell layer and hilus of the dentate gyrus, where adult neurogenesis occurs. " [Wikipedia:Subgranular_zone]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Doublecortin_expression-2.png/600px-Doublecortin_expression-2.png
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation
[Term]
id: UBERON:0009953
name: post-embryonic organism
synonym: "post-natal organism" NARROW [UBERON:cjm]
xref: MA:0002405
is_a: UBERON:0000468 ! multi-cellular organism
relationship: existence_starts_with UBERON:0000092
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_starts_with UBERON:0000092 ! post-embryonic stage
relationship: existence_starts_with UBERON:0000092 ! post-embryonic stage
[Term]
id: UBERON:0009954
name: vomeronasal system
def: "a vertebrate nasal chemosensory system that is responsible for detecting intraspecific pheromonal cues as well as environmental odorants" []
comment: Editor note: check relationship to olfactory system. Evolution: The morphological components of the VNS are found only in tetrapods, but the genetic components of the system have been found in teleost fish, in addition to tetrapods. In tetrapods, the VNS was thought to be the olfactory system for detecting pheromones, while the main olfactory system detected general odorants (Scalia and Winans 1975). However, experimental evidence suggests that there is not such a clear functional distinction (Restrepo et al. 2004; Baxi, Dorries, and Eisthen 2006; Spehr et al. 2006; Kelliher 2007). Sea lampreys produce unique bile acids which act as pheromones both in migration and mate finding (Li, Sorensen, and Gallaher 1995; Li et al. 2002; Siefkes and Li 2004). However, bile acids in teleost fish are known to require components of the main olfactory signal transduction pathway (Hansen et al. 2003), and interruption of the VNS signal transduction pathway had no effect on bile acid olfactory response (Hansen et al. 2003)[Grus - EVOLUTION OF THE VOMERONASAL SYSTEM VIEWED THROUGH SYSTEM-SPECIFIC GENES]
is_a: UBERON:0001032 ! sensory system
relationship: part_of UBERON:0005725 ! olfactory system
[Term]
id: UBERON:0009955
name: neurogenic placode
def: "Cranial placode with neurogenic potential[cjm]. Neurogenic placodes are transient ectodermal thickenings that form at the border of the neural plate and epidermis and give rise to sensory neurons of the cranial ganglia[ZFA]. The neurogenic placodes give rise to parts of various nerves and ganglia, the olfactory organ, parietal eye, parts of the inner ear, and the lateral line. There are 2 major series of neurogenic placodes, the dorsolateral and ventrolateral or epibranchial[PMID]" [PMID:11523831, Wikipedia:Neurogenic_placodes, ZFA:0001309]
synonym: "neurogenic placodes" EXACT PLURAL [ZFA:0001309]
synonym: "placodae neurogenicae" RELATED LATIN [Wikipedia:Neurogenic_placodes]
xref: TAO:0001309
xref: ZFA:0001309
is_a: UBERON:0002546 {source="cjm"} ! cranial placode
[Term]
id: UBERON:0009956
name: corpuscle of de Quatrefage
def: "A specialised sensory organ located in the subepidermal connective tissue at the rostral end of late larval and adult amphioxus. They consist of between 1 and 4 nerve cells with axons, each with 2 cilia, surrounded by up to 7 sheath cells. The cilia extend into a protrusion of the basal lamina which surrounds each corpuscle. The axonal process contributes to the rostral nerve." [PMID:11523831]
synonym: "organ of de Quatrefage" EXACT []
is_a: UBERON:0000020 ! sense organ
[Term]
id: UBERON:0009957
name: ciliated pit
comment: Development: joins with Hatschek’s diverticulum to form Hatschek’s pit in the adult. Location: anterior to the mouth.
synonym: "pre-oral pit" RELATED []
is_a: UBERON:0006846 ! groove
[Term]
id: UBERON:0009958
name: bladder lumen
synonym: "bladder cavity" EXACT [FMA:15924]
synonym: "lumen of urinary bladder" EXACT [FMA:15924]
synonym: "urinary bladder lumen" EXACT [FMA:15924]
xref: EHDAA2:0004058
xref: FMA:15924
xref: galen:UrinaryBladderCavity
xref: SCTID:279405003
is_a: UBERON:0002558 {source="FMA"} ! organ cavity
relationship: develops_from UBERON:0009844 {source="EHDAA2"} ! urogenital sinus lumen
relationship: part_of UBERON:0001255 {source="FMA"} ! urinary bladder
[Term]
id: UBERON:0009959
name: lumen of oropharynx
synonym: "oropharyngeal cavity" EXACT [EHDAA2:0004556]
synonym: "oropharynx lumen" EXACT [FMA:55095]
xref: EHDAA2:0004556
xref: FMA:55095
is_a: UBERON:0000464 ! anatomical space
relationship: develops_from UBERON:0006272 {source="EHDAA2"} ! oronasal cavity
relationship: part_of UBERON:0001731 ! cavity of pharynx
relationship: surrounded_by UBERON:0001729 {source="FMA"} ! oropharynx
[Term]
id: UBERON:0009960
name: esophagus smooth muscle circular layer
synonym: "esophagus smooth muscle circular layer" RELATED [MA:0001574]
xref: FMA:67605
xref: MA:0001574
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus
relationship: part_of UBERON:0003832 {source="FMA"} ! esophagus muscle
[Term]
id: UBERON:0009961
name: esophagus smooth muscle longitudinal layer
synonym: "esophagus smooth muscle longitudinal layer" RELATED [MA:0001575]
synonym: "longitudinal muscle layer of esophagus" EXACT [FMA:63573]
xref: FMA:63573
xref: MA:0001575
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus
relationship: part_of UBERON:0003832 {source="FMA"} ! esophagus muscle
[Term]
id: UBERON:0009962
name: excretory gland
def: "A gland that discharges its secretion through a duct opening on an internal or external surface of the body, as a lacrimal gland." [Dorlands_Medical_Dictionary:MerckSource]
comment: todo - child terms
xref: BTO:0000431
is_a: UBERON:0002530 {source="BTO"} ! gland
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001008 ! excretory system
[Term]
id: UBERON:0009963
name: antennal gland
def: "Excretory gland situated in the basal article of the antennal peduncle. It functions to rehulate ionic balance" [BTO:0000075, UBERON:cjm]
comment: Editor note: consider also classifying this as a renal tubule - or separate terms for coiled/nephridial canal. Editor note: cede this term to Arthropod AO
synonym: "green gland" EXACT []
xref: BTO:0000075
is_a: UBERON:0009962 {source="BTO"} ! excretory gland
relationship: part_of UBERON:0000972 {source="BTO"} ! antenna
[Term]
id: UBERON:0009964
name: crustacean maxillary gland
def: "Excretory organ in maxillary segment with duct opening on maxilla." [http://crustacea.nhm.org/glossary/define.html]
comment: Taxon notes: consider generalizing to include millipedes, centipedes. Function: Two different excretory organs are found among crustaceans: the antennal gland and the maxillary gland. Both have the same basic structure: an end sac and a convoluted duct that may expand into a bladder before opening to the outside. In most adult crustaceans only one or the other gland functions. The functional gland may change during the life cycle. Terminology note: http://crustacea.nhm.org/glossary/define.html?termID=327 suggests green gland as the generic term and antennal as the decapoda term. Editor note: cede this term to Arthropod AO
is_a: UBERON:0009962 {source="BTO"} ! excretory gland
[Term]
id: UBERON:0009965
name: coxal gland
def: "a gland found in some arthropods, for collecting and excreting urine. The gland comprises an end sac (saccule), a long duct (labyrinth) and a terminal bladder (reservoir). There is generally only one pair (two in some spiders), and they open on the coxae of the walking legs[WP]." [Wikipedia:Coxal_gland]
comment: Taxon notes: They are found in all arachnids (with the exception of some Acari), and in other chelicerates, such as horseshoe crabs. Homology: The coxal gland is thought to be homologous with the antennal gland of crustaceans. Editor note: cede this term to Arthropod AO
xref: SPD:0000116
xref: TADS:0000080
property_value: "homologous_to" UBERON:0009963
is_a: UBERON:0009962 {source="BTO"} ! excretory gland
[Term]
id: UBERON:0009966
name: internodal tract
def: "Subdivision of conducting systemof heart which consists of the anterior, middle and posterior internodal tracts beneath the endocardium of interatrial septum and above the attachment of the septal leaflet of tricuspid valve." [FMA:9479]
comment: evidence is sparse [http://www.gpnotebook.co.uk/simplepage.cfm?ID=-483065798] There is some functional evidence for the existence of specialized conducting pathways within the atria (termed internodal tracts), although this is controversial[http://www.cvphysiology.com/Arrhythmias/A003.htm]. Editor note: include 3 subtypes?
synonym: "interatrial conduction tract" EXACT []
synonym: "internodal conduction tract" EXACT []
synonym: "internodal fasciculus" EXACT [FMA:9479]
synonym: "internodal tract muscle tissue" EXACT [FMA:9479]
xref: FMA:9479
is_a: UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0002350 {source="FMA"} ! conducting system of heart
[Term]
id: UBERON:0009967
name: spleen venous sinus
comment: See comments for UBERON:0003910
synonym: "sinus lienalis" EXACT [FMA:TA]
synonym: "sinus splenicus" EXACT [FMA:TA]
synonym: "splenic sinus" EXACT [FMA:62815]
synonym: "venous sinus of red pulp of spleen" EXACT [FMA:62815]
xref: FMA:62815
xref: MA:0000761
xref: ncithesaurus:Splenic_Sinus
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003497 ! abdomen blood vessel
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0006615 {source="cjm"} ! venous sinus
relationship: part_of UBERON:0001250 {source="MA"} ! red pulp of spleen
[Term]
id: UBERON:0009968
name: primitive superior sagittal sinus
xref: EHDAA2:0001527
xref: EHDAA:9876
xref: EMAPA:18636
is_a: UBERON:0001638 {source="EHDAA2"} ! vein
is_a: UBERON:0003499 ! brain blood vessel
relationship: part_of UBERON:0005486 {source="EHDAA2"} ! venous dural sinus
[Term]
id: UBERON:0009969
name: stato-acoustic epithelium
comment: Editor note: required by CL
xref: FMA:64804
is_a: UBERON:0006934 {source="FMA"} ! sensory epithelium
[Term]
id: UBERON:0009970
name: epithelium of pancreatic duct
comment: Editor note: in EHDAA2, the embryonic pancreatic ducts (dorsal, ventral) are classified as eithelial sacs, which would render them subclasses this
synonym: "pancreatic duct epithelium" EXACT [FMA:67681]
synonym: "pancreatic ductal epithelium" EXACT [FMA:67681]
xref: FMA:67681
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0007329
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0007329 ! pancreatic duct
relationship: develops_from UBERON:0000924 {source="FMA-inferred"} ! ectoderm
relationship: part_of UBERON:0007329 ! pancreatic duct
[Term]
id: UBERON:0009971
name: principal gastric gland
def: "one of the gastric glands that secretes the hydrochloric acid of the gastric juice[Stedman's]." [http://www.drugs.com/dict/acid-gland.html, MP:0003892]
comment: AO notes: FMA has this as part of both the fundus and the body, but these are largely spatially disjoint.
synonym: "acid gland" EXACT [http://www.drugs.com/dict/acid-gland.html]
synonym: "gastric follicle" RELATED [MP:0003892]
synonym: "gastric gland" BROAD [MP:0003892]
synonym: "glandula gastrica propria" EXACT [FMA:14921]
synonym: "main gastric gland" EXACT [FMA:14921]
synonym: "oxyntic gland" EXACT [FMA:14921]
synonym: "Wassman gland" RELATED [MP:0003892]
xref: FMA:14921
xref: FMA:14923
is_a: UBERON:0000325 {source="FMA"} ! gastric gland
[Term]
id: UBERON:0009972
name: ureteropelvic junction
def: "the junction between the ureter and the renal pelvis of the kidney" [MP:0011487]
synonym: "pelviureteric junction" EXACT [FMA:15898]
xref: FMA:15898
xref: SCTID:264130006
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0007651 ! anatomical junction
relationship: connects UBERON:0000056
relationship: connects UBERON:0001224
intersection_of: UBERON:0007651 ! anatomical junction
intersection_of: connects UBERON:0000056 ! ureter
intersection_of: connects UBERON:0001224 ! renal pelvis
relationship: connects UBERON:0000056 ! ureter
relationship: connects UBERON:0001224 ! renal pelvis
relationship: part_of UBERON:0001008 {source="MP"} ! excretory system
[Term]
id: UBERON:0009973
name: ureterovesical junction
def: "the valve-like structure found at the site of entry of the ureter into the urinary bladder, normally displays an oblique angulation through the detrusor to avoid reflux of urine up the ureters and the kidney" [MP:0011488]
xref: FMA:15899
is_a: UBERON:0003978 ! valve
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0007651 ! anatomical junction
relationship: connects UBERON:0000056
relationship: connects UBERON:0001255
intersection_of: UBERON:0007651 ! anatomical junction
intersection_of: connects UBERON:0000056 ! ureter
intersection_of: connects UBERON:0001255 ! urinary bladder
relationship: connects UBERON:0000056 ! ureter
relationship: connects UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001008 {source="MP"} ! excretory system
[Term]
id: UBERON:0009974
name: lumen of Rathke's pouch
synonym: "adenohypophysis invagination" NARROW [EHDAA2:0004139]
synonym: "Rathkes pouch invagination" NARROW [EHDAA2:0004138]
xref: EHDAA2:0004138
xref: EHDAA2:0004139
is_a: UBERON:0002553 ! anatomical cavity
is_a: UBERON:0005082 ! tube lumen
relationship: surrounded_by UBERON:0005356
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: surrounded_by UBERON:0005356 ! Rathke's pouch
relationship: surrounded_by UBERON:0005356 ! Rathke's pouch
[Term]
id: UBERON:0009975
name: remnant of lumen of Rathke's pouch
is_a: UBERON:0002553 ! anatomical cavity
relationship: adjacent_to UBERON:0002196 ! adenohypophysis
relationship: develops_from UBERON:0009974 ! lumen of Rathke's pouch
[Term]
id: UBERON:0009976
name: hypothalamo-hypophyseal system
def: "An intrinsic circulatory network that transports hormones from the median eminence of the hypothalamus to the adenohypophysis." [ISBN10:0471888893, Wikipedia:Hypophyseal_portal_system]
comment: Taxon notes: in lampreys and teleost hormones enter the adenohypophysis by diffusion. Editor notes: we represent this structure strictly as a system of blood vessels (presumably in line with the FMA). It could also be extended to include neurons and fiber tracts, as per the MESH definition. Function notes: One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis). The hypothalamus is responsible for certain metabolic processes and other activities of the autonomic nervous system. It synthesizes and secretes certain neurohormones, often called hypothalamic-releasing hormones, and these in turn stimulate or inhibit the secretion of pituitary hormones. The hypothalamus controls body temperature, hunger, thirst, fatigue, sleep, and circadian cycles[WP]
synonym: "hypophyseal portal system" EXACT [Wikipedia:Hypophyseal_portal_system]
synonym: "hypothalamic hypophyseal portal system" EXACT [ISBN10:0471888893]
synonym: "hypothalamo hypophyseal system" RELATED [MESH:A.06.407.747.357]
synonym: "hypothalamo-hypophyseal system" RELATED [MESH:A.06.407.747.357]
synonym: "hypothalamohypophyseal portal system" EXACT []
synonym: "venae portales hypophysiales" EXACT [Wikipedia:Hypophyseal_portal_system]
synonym: "venae portales hypophysiales" RELATED LATIN [Wikipedia:Hypophyseal_portal_system]
xref: FMA:70860
xref: MESH:A.06.407.747.357
xref: ncithesaurus:Hypothalamohypophyseal_Portal_System
property_value: RO:0002161 NCBITaxon:32443
is_a: UBERON:0005806 ! portal system
relationship: connects UBERON:0001898 ! hypothalamus
relationship: connects UBERON:0002196 ! adenohypophysis
relationship: connects UBERON:0002197 ! median eminence of neurohypophysis
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0009977
name: natal tooth
def: "Predeciduous teeth present at birth. They may be well formed and normal or may represent hornified epithelial structures without roots. They are found on the gingivae over the crest of the ridge and arise from accessory buds of the dental lamina ahead of the deciduous buds or from buds of the accessory dental lamina. (From Jablonski, Dictionary of Dentistry, 1992)" [MESH:A.14.254.860.700.500]
synonym: "natal teeth" EXACT PLURAL [GAID:1267]
synonym: "natal tooth" RELATED [GAID:1267]
xref: GAID:1267
xref: MESH:A.14.254.860.700.500
is_a: UBERON:0007115 {source="GAID"} ! deciduous tooth
[Term]
id: UBERON:0009978
name: epicondyle
def: "." [Wikipedia:Epicondyle]
synonym: "epicondylus" RELATED LATIN [Wikipedia:Epicondyle]
xref: FMA:75435
xref: galen:Epicondyle
xref: ncithesaurus:Epicondyle
xref: SCTID:333209006
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
[Term]
id: UBERON:0009979
name: condyle
def: "the round prominence at the end of a bone, most often part of a joint - an articulation with another bone[WP]." [Wikipedia:Condyle_(anatomy)]
xref: FMA:75434
xref: galen:Condyle
xref: ncithesaurus:Condyle
xref: SCTID:91737009
xref: TAO:0002259
property_value: UBPROP:0000001 "Protuberance on a bone that participates in a joint with another bone.[TAO]" xsd:string
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
[Term]
id: UBERON:0009980
name: condyle of femur
synonym: "condylus femoralis" EXACT []
synonym: "condylus femoris" EXACT []
synonym: "femoral condyle" EXACT []
synonym: "fibular condyle" RELATED [AAO:0000900]
xref: AAO:0000900
xref: FMA:32855
xref: galen:FemoralCondyle
xref: SCTID:304912006
property_value: UBPROP:0000001 "Convex articular facet of the distal head of the femur that articulates with the proximal head of the fibula.[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0009979 ! condyle
relationship: part_of UBERON:0004406
intersection_of: UBERON:0009979 ! condyle
intersection_of: part_of UBERON:0004406 ! distal epiphysis of femur
relationship: part_of UBERON:0004406 ! distal epiphysis of femur
[Term]
id: UBERON:0009984
name: medial condyle of femur
def: "The medial condyle is one of the two projections on the lower extremity of femur. The medial condyle is larger than the lateral (outer) condyle due to more weight bearing caused by the center of gravity being medial to the knee. On the posterior surface of the condyle the linea aspera (a ridge running down the posterior shaft of the femur) turns into the medial supracondylar ridge. The outermost protrusion on the medial surface of the medial condyle is referred to as the \"medial epicondyle\" and can be palpated by running fingers medially from the patella with the knee in flexion." [Wikipedia:Medial_condyle_of_femur]
synonym: "c. medialis femoris" RELATED [Wikipedia:Medial_condyle_of_femur]
synonym: "c. medialis femoris" RELATED LATIN [Wikipedia:Medial_condyle_of_femur]
synonym: "medial condyle of the femur" RELATED [Wikipedia:Medial_condyle_of_femur]
xref: FMA:32858
xref: http://upload.wikimedia.org/wikipedia/commons/5/53/Gray246.png
xref: SCTID:182056007
is_a: UBERON:0009980 ! condyle of femur
relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur
[Term]
id: UBERON:0009985
name: lateral condyle of femur
def: "The lateral condyle is one of the two projections on the lower extremity of femur. It is the more prominent and is the broader both in its antero-posterior and transverse diameters" [Wikipedia:Lateral_condyle_of_femur]
synonym: "c. lateralis femoris" RELATED LATIN [Wikipedia:Lateral_condyle_of_femur]
synonym: "c. lateralis femoris" RELATED [Wikipedia:Lateral_condyle_of_femur]
synonym: "lateral condyle of the femur" RELATED [Wikipedia:Lateral_condyle_of_femur]
xref: FMA:32859
xref: http://upload.wikimedia.org/wikipedia/commons/5/53/Gray246.png
xref: SCTID:182057003
is_a: UBERON:0009980 ! condyle of femur
relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur
[Term]
id: UBERON:0009986
name: lateral epicondyle of femur
def: "The lateral epicondyle of the femur, smaller and less prominent than the medial epicondyle, gives attachment to the fibular collateral ligament of the knee-joint. Directly below it is a small depression from which a smooth well-marked groove curves obliquely upward and backward to the posterior extremity of the condyle." [Wikipedia:Lateral_epicondyle_of_the_femur]
synonym: "e. lateralis femoris" RELATED LATIN [Wikipedia:Lateral_epicondyle_of_the_femur]
synonym: "epicondylus lateralis (femur)" EXACT [FMA:32867]
synonym: "lateral femoral epicondyle" RELATED [Wikipedia:Lateral_epicondyle_of_the_femur]
xref: FMA:32867
xref: galen:LateralFemoralEpicondyle
xref: http://upload.wikimedia.org/wikipedia/commons/5/53/Gray246.png
xref: SCTID:209275007
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0009978 {source="FMA"} ! epicondyle
relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur
relationship: part_of UBERON:0009985 {source="FMA"} ! lateral condyle of femur
[Term]
id: UBERON:0009987
name: medial epicondyle of femur
def: "The medial epicondyle of the femur is a bony protrusion located on the medial side of the bone's distal end. Located above the medial condyle, it bears an elevation, the adductor tubercle, which serves for the attachment of the superficial part, or \"tendinous insertion\", of the adductor magnus. This tendinous part here forms an intermuscular septum which forms the medial separation between the thigh's flexors and extensors. Behind it, and proximally to the medial condyle is a rough impression which gives origin to the medial head of the Gastrocnemius." [Wikipedia:Medial_epicondyle_of_the_femur]
synonym: "epicondylus medialis (femur)" EXACT [FMA:32864]
synonym: "epicondylus medialis femoris" RELATED LATIN [Wikipedia:Medial_epicondyle_of_the_femur]
synonym: "medial femoral epicondyle" RELATED [Wikipedia:Medial_epicondyle_of_the_femur]
xref: FMA:32864
xref: galen:MedialFemoralEpicondyle
xref: http://upload.wikimedia.org/wikipedia/commons/e/e0/Gray345.png
xref: SCTID:209172001
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0009978 {source="FMA"} ! epicondyle
relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur
relationship: part_of UBERON:0009984 {source="FMA"} ! medial condyle of femur
[Term]
id: UBERON:0009988
name: condyle of humerus
def: "the distal end of the humerus, including the trochlea, capitulum and the olecranon, coronoid and radial fossae" [http://www.medilexicon.com/medicaldictionary.php?t=19715]
synonym: "condylus humeri" EXACT []
xref: FMA:23377
xref: SCTID:361778001
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0009979 ! condyle
relationship: part_of UBERON:0004404
intersection_of: UBERON:0009979 ! condyle
intersection_of: part_of UBERON:0004404 ! distal epiphysis of humerus
relationship: part_of UBERON:0004404 ! distal epiphysis of humerus
[Term]
id: UBERON:0009989
name: condyle of tibia
def: "One of the lateral or medial condyles of the tibia." [Wikipedia:Tibial_condyle]
synonym: "tibial condyle" EXACT [AAO:0000899]
xref: AAO:0000899
xref: SCTID:182062002
property_value: UBPROP:0000001 "Convex articular facet of the distal head of the femur that articulates with the proximal head of the tibia.[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0009979 ! condyle
relationship: part_of UBERON:0008772
intersection_of: UBERON:0009979 ! condyle
intersection_of: part_of UBERON:0008772 ! proximal epiphysis of tibia
relationship: part_of UBERON:0008772 ! proximal epiphysis of tibia
[Term]
id: UBERON:0009990
name: medial condyle of tibia
def: "The medial condyle is the medial portion of the upper extremity of tibia. It is the site of insertion for the Semimembranosus muscle[WP]." [Wikipedia:Medial_condyle_of_tibia]
synonym: "c. medialis tibiae" RELATED LATIN [Wikipedia:Medial_condyle_of_tibia]
synonym: "condylus medialis (tibia)" EXACT [FMA:35445]
synonym: "medial condyle of the tibia" RELATED [Wikipedia:Medial_condyle_of_tibia]
synonym: "medial tibial condyle" RELATED [Wikipedia:Medial_condyle_of_tibia]
xref: FMA:35445
xref: galen:MedialTibialCondyle
xref: http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray257.png
xref: SCTID:182066004
is_a: UBERON:0009989 ! condyle of tibia
[Term]
id: UBERON:0009991
name: lateral condyle of tibia
def: "The lateral condyle is the lateral portion of the upper extremity of tibia. It serves as the insertion for the Biceps femoris muscle[WP]." [Wikipedia:Lateral_condyle_of_tibia]
synonym: "c. lateralis tibiae" RELATED LATIN [Wikipedia:Lateral_condyle_of_tibia]
synonym: "condylus lateralis (tibia)" EXACT [FMA:35448]
xref: FMA:35448
xref: http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray257.png
xref: SCTID:182067008
is_a: UBERON:0009989 ! condyle of tibia
[Term]
id: UBERON:0009992
name: cranial sensory ganglion
def: "the ganglion found on the root of each cranial nerve, containing the cell bodies of afferent (sensory) neurons. " [http://medical-dictionary.thefreedictionary.com/cranial+sensory+ganglion]
comment: Editor note: check this - merge into cranial ganglion? WP: the geniculate, petrosal and nodose ganglia, appended respectively to cranial nerves VII, IX and X. Other ontology notes: has no subtypes in FMA
synonym: "cranial nerve sensory ganglion" EXACT [FMA:5887]
synonym: "ganglion sensorium cranialium" EXACT [FMA:5887]
synonym: "sensory ganglion of cranial nerve" EXACT [FMA:5887]
xref: FMA:5887
is_a: UBERON:0001714 {source="cjm"} ! cranial ganglion
is_a: UBERON:0001800 {source="FMA"} ! sensory ganglion
[Term]
id: UBERON:0009993
name: primary chorionic villus
def: "A chorionic villus that is a solid outgrowth of the cytotrophoblast that protrudes into the syncytiotrophoblast." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm]
xref: ncithesaurus:Primary_Chorionic_Villus
is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus
[Term]
id: UBERON:0009994
name: secondary chorionic villus
def: "A chorionic villus that is has a core of loose connective tissue, which in humans grows into the primary villi about the third week of development." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm]
xref: ncithesaurus:Secondary_Chorionic_Villus
is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus
[Term]
id: UBERON:0009995
name: tertiary chorionic villus
def: "Tertiary chorionic villi contain embryonic blood vessels that develop from mesenchymal cells in the loose connective tissue core. These blood vessels connect up with vessels that develop in the chorion and connecting stalk and begin to circulate embryonic blood about the third week of development in humans." [http://www.med.umich.edu/lrc/coursepages/m1/embryology/embryo/06placenta.htm]
xref: ncithesaurus:Tertiary_Chorionic_Villus
is_a: UBERON:0007106 {source="ncithesaurus"} ! chorionic villus
[Term]
id: UBERON:0010002
name: pulmonary neuroendocrine body
def: "corpuscular, organoid structures composed of PNECs, found as distinctive innervated clusters only within intrapulmonary airways, where they appear concentrated at airway branch points; NEBs reach from the basement membrane to the airway lumen and are thought to function as oxygen sensors." [MP:0010921]
synonym: "NEB" EXACT [NEW_MP:0010921]
synonym: "pulmonary neuroepithelial body" EXACT [NEW_MP:0010921]
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0000115 ! lung epithelium
[Term]
id: UBERON:0010005
name: placental labyrinth villi
def: "the vascularized and branched structures arising from the rodent trophoblast-derived epithelium that allow an increase its surface area for the efficient exchange of nutrients and wastes between the maternal and fetal circulation" [MP:0011522]
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth
[Term]
id: UBERON:0010006
name: placenta intervillous maternal lacunae
def: "the spaces of the placenta occupied by maternal blood, into which the fetal labyrinth villi project" [MP:0011525]
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth
[Term]
id: UBERON:0010007
name: placenta fetal blood space
def: "the spaces of the placenta occupied by fetal blood, primarily within the fetal labyrinth villi" [MP:0011526]
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth
[Term]
id: UBERON:0010008
name: mammalian cotyledon
def: "Round structure consisting of chorionic villi[PMID]. A separations of the decidua basalis of the placenta, separated by placental septa. Each cotyledon consists of a main stem of a chorionic villus as well as its branches and subbranches. The cotyledons receive fetal blood from chorionic vessels, which branch off cotyledon vessels into the cotyledons, which, in turn, branch into capillaries. The cotyledons are surrounded by maternal blood, which can exchange oxygen and nutrients with the fetal blood in the capillaries[WP]." [PMID:19829370, Wikipedia:Placental_cotyledon]
comment: Rodents have a single cotyledon (called a discoid placenta), whereas humans have multiple cotyledons, although they are consolidated into a cluster that resembles a single disc[PMID:19829370]
synonym: "cotyledon" BROAD []
xref: http://upload.wikimedia.org/wikipedia/commons/3/30/Placental_cotyledon.png
xref: ncithesaurus:Cotyledon
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0002450 ! decidua
[Term]
id: UBERON:0010009
name: aggregate regional part of brain
def: "A regional part of brain consisting of multiple brain regions that are not related through a simple volummetric part of hierarchy, e.g., basal ganglia[NIF]." [NIF_GrossAnatomy:nlx_anat_20090509]
synonym: "set of nuclei of neuraxis" EXACT [FMA:256381]
xref: FMA:256381
xref: NIF_GrossAnatomy:nlx_anat_20090509
is_a: UBERON:0002616 {source="NIF"} ! regional part of brain
[Term]
id: UBERON:0010010
name: basal nucleus of telencephalon
def: "Subdivision of telencephalon which is actually several islands of neurons lying within the substantia innominata, located ventral to the basal ganglia and anterior to the hypothalamus." [FMA:61887, Wikipedia:Nucleus_basalis_of_Meynert]
comment: AO notes: MA has basal nucleus as synonym for BG. Function notes: rich in acetylcholine and choline acetyltransferase[WP]. Location notes: The NBM is inferior to the globus pallidus and within an area known as the substantia innominata
synonym: "basal magnocellular nucleus (substantia innominata)" EXACT [FMA:61887]
synonym: "basal nuclei of Meynert" EXACT [FMA:61887]
synonym: "basal nucleus" EXACT [NIF_GrossAnatomy:birnlex_1107]
synonym: "basal nucleus of Meynert" EXACT [FMA:61887]
synonym: "basal substance of telencephalon" EXACT [FMA:61887]
synonym: "ganglion of Meynert" EXACT [FMA:61887]
synonym: "Meynert's nucleus" EXACT [FMA:61887]
synonym: "nucleus basalis" EXACT [NIF_GrossAnatomy:birnlex_1107]
synonym: "nucleus basalis of Meynert" EXACT [NIF_GrossAnatomy:birnlex_1107]
synonym: "nucleus basalis telencephali" RELATED LATIN [Wikipedia:Nucleus_basalis_of_Meynert]
synonym: "substantia basalis telencephali" EXACT [FMA:TA]
xref: FMA:61887
xref: http://upload.wikimedia.org/wikipedia/commons/3/36/Substantia_innominata_MRI.PNG
xref: NIF_GrossAnatomy:birnlex_1107
xref: SCTID:369109003
is_a: UBERON:0009663 ! telencephalic nucleus
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0003017 {source="WP"} ! substantia innominata
[Term]
id: UBERON:0010011
name: collection of basal ganglia
comment: Editor note: it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the collection of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done.
synonym: "basal ganglia" EXACT [FMA:84013]
synonym: "basal ganglia set" EXACT [FMA:84013]
synonym: "set of basal ganglia" EXACT [FMA:84013]
xref: BM:Tel-BG
xref: FMA:84013
xref: GAID:617
xref: MA:0000184
xref: MESH:A.08.186.211.730.885.105
xref: ncithesaurus:Basal_Ganglia
xref: NIF_GrossAnatomy:birnlex_826
xref: VHOG:0001696
is_a: UBERON:0002791 ! regional part of telencephalon
is_a: UBERON:0010009 {source="FMA"} ! aggregate regional part of brain
relationship: part_of UBERON:0000454 {source="FMA"} ! cerebral subcortex
relationship: part_of UBERON:0001893 {source="NIF"} ! telencephalon
[Term]
id: UBERON:0010012
name: upper beak
synonym: "maxillary beak" RELATED []
synonym: "rostrum maxillare" RELATED []
synonym: "upper mandible" RELATED SENSU []
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001709 ! upper jaw region
relationship: part_of UBERON:0005094 ! beak
[Term]
id: UBERON:0010013
name: lower beak
synonym: "lower mandible" RELATED SENSU []
synonym: "mandibular beak" RELATED []
synonym: "rostrum mandibulare" RELATED []
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001710 ! lower jaw region
relationship: part_of UBERON:0005094 ! beak
[Term]
id: UBERON:0010014
name: epigonal organ
def: "An elongate paired tissue ventral to the kidneys and partialy enveloping the anterior gonads in Elasmobranchii. Apparently important to the immune system" [http://www.fishbase.org/glossary/Glossary.php?q=epigonal+organ]
synonym: "subgonal organ" EXACT []
property_value: RO:0002161 NCBITaxon:7863
is_a: UBERON:0004177 ! hemopoietic organ
is_a: UBERON:0005057 ! immune organ
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0010015
name: ventral patch of Leydig's organ
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000040 ! Leydig's organ
[Term]
id: UBERON:0010016
name: spiral valve of intestine
property_value: RO:0002161 NCBITaxon:32523
is_a: UBERON:0003978 {source="cjm"} ! valve
is_a: UBERON:0004119 ! endoderm-derived structure
disjoint_from: UBERON:0010017 ! spiral valve of cystic duct
disjoint_from: UBERON:0010018 ! spiral valve of conus arteriosus
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0010017
name: spiral valve of cystic duct
def: "a series of crescentic folds of mucous membrane somewhat spirally arranged on the interior of the gallbladder and continuing into the cystic duct" [http://dictionary.reference.com/browse/spiral+valve, Wikipedia:Spiral_valves_of_Heister]
synonym: "Heister's valve" EXACT [FMA:15855]
synonym: "plica spiralis" EXACT [FMA:TA]
synonym: "plica spiralis (ductus cysticus)" EXACT [FMA:15855]
synonym: "spiral fold of cystic duct" EXACT [FMA:15855]
synonym: "valve of Heister " EXACT []
xref: FMA:15855
xref: SCTID:270125000
is_a: UBERON:0003978 {source="FMA"} ! valve
disjoint_from: UBERON:0010018 ! spiral valve of conus arteriosus
[Term]
id: UBERON:0010018
name: spiral valve of conus arteriosus
def: "The spiral valve alternately blocks & unblocks the entrances to the left and right pulmonary arches (sending unoxygenated blood to the skin & lungs)." [http://people.eku.edu/ritchisong/342notes9.html]
comment: Taxon notes: many dipnoans and amphibians. Evolution notes: The spiral valve is considered to have evolved from the right member of the four embryonic endocardial ridges (Goodrich, 1930 - via Morris 1974)
xref: AAO:0010251
xref: http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter21/medialib/Kardong_fig_12_29.html
property_value: RO:0002161 NCBITaxon:32524
is_a: UBERON:0003978 {source="cjm"} ! valve
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0003983 {source="AAO"} ! conus arteriosus
[Term]
id: UBERON:0010019
name: spiracle
def: "a small hole behind each eye that opens to the mouth in some fish. In the primitive jawless fish the first gill opening immediately behind the mouth is essentially similar to the other gill openings." [ISBN10:0073040584, Wikipedia:Spiracle#Vertebrates]
comment: Taxon notes: The spiracle is still found in all cartilaginous fish except chimaeras, and in bony fishes in the coelacanth, sturgeon, paddlefish and bichirs. It is also seen as an otic notch in the skull of the extinct labyrinthodonts, and is thought to be associated with the ear opening in amniotes and frogs[WP]. In elasmobranchs (sharks and rays), a spiracle is found behind each eye, and is often used to pump water through the gills while the animal is at rest (Fouts, 2003). A spiracle is also found in primitive bony fishes as the chirrups. TODO - check GO:0035277-spiracle morphogenesis, open tracheal system - taxon constraint in GO
synonym: "vertebrate spiracle" EXACT []
property_value: RO:0002161 NCBITaxon:32523
is_a: UBERON:0003102 {source="cjm"} ! surface structure
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0010020
name: tubotympanic recess epithelium
def: "The dorsal portion of the embryonic first endodermal pharyngeal pouch; it develops into the middle ear cavity." [http://www.biology-online.org/dictionary/Tubotympanic_recess]
xref: EHDAA2:0004115
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac
relationship: develops_from UBERON:0007122 {source="PMID:11237469", source="EHDAA2", source="ISBN10:0073040584"} ! pharyngeal pouch 1
relationship: part_of UBERON:0001756 {source="MA"} ! middle ear
[Term]
id: UBERON:0010021
name: dorsal part of pharyngeal pouch 1
comment: Development notes: in humans, dorsal diverticulum deepens as the tubotympanic recess to form the auditory tube[ISBN10:1607950324]
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0007122 ! pharyngeal pouch 1
[Term]
id: UBERON:0010022
name: ventral part of pharyngeal pouch 1
comment: Development notes: in humans, the ventral portion of pouches 1 and 2 are obliterated by the developing tongue[ISBN10:1607950324]
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0007122 ! pharyngeal pouch 1
[Term]
id: UBERON:0010023
name: dorsal part of pharyngeal pouch 2
comment: Development notes: in humans, persists as the tonsillar fossa - the endodermal lining covers the mesodermal lymphatic tissue to form the palatine tonsil[ISBN10:1607950324]
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0007123 ! pharyngeal pouch 2
[Term]
id: UBERON:0010024
name: ventral part of pharyngeal pouch 2
comment: Development notes: in humans, the ventral portion of pouches 1 and 2 are obliterated by the developing tongue[ISBN10:1607950324]
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0007123 ! pharyngeal pouch 2
[Term]
id: UBERON:0010025
name: dorsal part of pharyngeal pouch 3
synonym: "dorsal 3rd arch pharyngeal pouch endoderm" EXACT [EHDAA2:0000409]
xref: EHDAA2:0000409
xref: EMAPA:16758
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0007124 {source="EHDAA2"} ! pharyngeal pouch 3
[Term]
id: UBERON:0010026
name: ventral part of pharyngeal pouch 3
synonym: "ventral 3rd arch pharyngeal pouch endoderm" EXACT [EHDAA2:0002173]
xref: EHDAA2:0002173
xref: EMAPA:16759
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0007124 {source="EHDAA2"} ! pharyngeal pouch 3
[Term]
id: UBERON:0010027
name: dorsal part of pharyngeal pouch 4
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0007125 ! pharyngeal pouch 4
[Term]
id: UBERON:0010028
name: ventral part of pharyngeal pouch 4
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0007125 ! pharyngeal pouch 4
[Term]
id: UBERON:0010029
name: dorsal part of pharyngeal pouch 5
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0007126 ! pharyngeal pouch 5
[Term]
id: UBERON:0010030
name: ventral part of pharyngeal pouch 5
is_a: UBERON:0000490 ! unilaminar epithelium
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0007126 ! pharyngeal pouch 5
[Term]
id: UBERON:0010031
name: 6th arch mesenchyme
xref: EHDAA2:0004076
is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region
relationship: part_of UBERON:0003117
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003117 ! pharyngeal arch 6
relationship: part_of UBERON:0003117 ! pharyngeal arch 6
[Term]
id: UBERON:0010032
name: anterior part of tongue
def: "The portion of the tongue in front of the terminal sulcus. At the apex, thin and narrow, it is directed forward against the lingual surfaces of the lower incisor teeth. It is derived primarily from the first pharyngeal arch." [Wikipedia:Anterior_tongue]
comment: AO notes: check NCIT. Development notes: The lateral lingual swellings grow and fuse with eachother, encompassing the tuberculum impar to provide the ectodermally derived mucosa of the anterior 2/3 of the tongue
synonym: "anterior 2/3 of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "anterior 2/3 of tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "anterior two thirds of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "apex linguae" RELATED [Wikipedia:Anterior_tongue]
synonym: "apex of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "buccal part of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "front of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "oral part of the tongue" RELATED [Wikipedia:Anterior_tongue]
synonym: "pars anterior dorsi linguae" RELATED LATIN [Wikipedia:Anterior_tongue]
xref: FMA:229084
xref: http://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg
xref: ncithesaurus:Apex_of_the_Tongue
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0006260
relationship: part_of UBERON:0001723
intersection_of: UBERON:0000064 ! organ part
intersection_of: develops_from UBERON:0006260 ! lingual swellings
intersection_of: part_of UBERON:0001723 ! tongue
relationship: develops_from UBERON:0006260 ! lingual swellings
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0010033
name: posterior part of tongue
def: "The Posterior tongue, or pharyngeal part, is the part of the tongue behind the terminal sulcus. At its root, it is directed backward, and connected with the hyoid bone by the Hyoglossi and Genioglossi muscles and the hyoglossal membrane; with the epiglottis by three folds (glossoepiglottic) of mucous membrane; with the soft palate by the glossopalatine arches; and with the pharynx by the Constrictores pharyngis superiores and the mucous membrane. It is derived primarily from the third pharyngeal arch. (The second arch has a substantial contribution during fetal development, but this later atrophies. The fourth arch may also contribute, depending upon how the boundaries of the tongue are defined.)" [Wikipedia:Posterior_tongue]
synonym: "base of the tongue" RELATED [Wikipedia:Posterior_tongue]
synonym: "pars posterior (dorsum linguae)" EXACT [FMA:54645]
synonym: "pars posterior dorsi linguae" RELATED LATIN [Wikipedia:Posterior_tongue]
synonym: "pars posterior linguae" EXACT [FMA:TA]
synonym: "pars postsulcalis (dorsum linguae)" EXACT [FMA:54645]
synonym: "pharyngeal part of the tongue" RELATED [Wikipedia:Posterior_tongue]
synonym: "pharyngeal part of tongue" EXACT [FMA:54645]
synonym: "pharyngeal portion of dorsum of tongue" EXACT [FMA:54645]
synonym: "posterior 1/3 of the tongue" RELATED [Wikipedia:Posterior_tongue]
synonym: "posterior part of dorsum of tongue" EXACT [FMA:54645]
synonym: "posterior third of tongue" RELATED [Wikipedia:Posterior_tongue]
synonym: "postsulcal part of dorsum of tongue" EXACT [FMA:54645]
synonym: "radix linguae" RELATED [Wikipedia:Posterior_tongue]
xref: FMA:54645
xref: http://upload.wikimedia.org/wikipedia/commons/4/4c/Illu04_tongue.jpg
xref: ncithesaurus:Base_of_the_Tongue
xref: SCTID:362094001
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3
relationship: part_of UBERON:0009471 {source="FMA"} ! dorsum of tongue
[Term]
id: UBERON:0010034
name: copula linguae
def: "A single midventral prominence deriving from the ventral bases of pharyngeal arches 2, 3 and 4 - provides the covering of the posterior of the tongue //The furcula is at first separated from the tuberculum impar by a depression, but later by a ridge, the copula, formed by the forward growth and fusion of the ventral ends of the second, third, and part of the fourth branchial arches[WP]." [Wikipedia:Copula_linguae]
comment: add new term for Hypobranchial_eminence?
synonym: "copula" EXACT [EHDAA2:0004611]
synonym: "copula linguae" RELATED LATIN [Wikipedia:Copula_linguae]
xref: EHDAA2:0004611
xref: http://upload.wikimedia.org/wikipedia/commons/8/85/Gray980.png
xref: SCTID:361424000
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: has_developmental_contribution_from UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue
[Term]
id: UBERON:0010036
name: anterior tegmental nucleus
def: "a group of cells located ventral to the decussation of the superior cerebellar peduncle in the mouse ( Paxinos-2001 ) and rat ( Swanson-1998 )" [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1115]
xref: ABA:AT
xref: MA:0001055
is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus
is_a: UBERON:0009661 ! midbrain nucleus
relationship: part_of UBERON:0001891 {source="MA", source="ABA"} ! midbrain
[Term]
id: UBERON:0010038
name: fundic gastric gland
def: "The fundus glands (or fundic glands, or gastric glands) are found in the body and fundus of the stomach. They are simple tubes, two or more of which open into a single duct." [Wikipedia:Fundic_glands]
comment: Editor notes: Consider FMA:14923
synonym: "fundal gland" EXACT []
synonym: "fundus gland" EXACT []
synonym: "gastric fundal gland" EXACT []
synonym: "gastric fundus gland" EXACT []
synonym: "gastric gland of fundus of stomach" EXACT []
synonym: "glandulae gastricae" RELATED LATIN [Wikipedia:Fundic_glands]
xref: http://upload.wikimedia.org/wikipedia/commons/d/d7/Fundic_gland_polyp_%281%29.jpg
xref: ncithesaurus:Fundic_Gland
xref: SCTID:268338004
is_a: UBERON:0000325 ! gastric gland
relationship: part_of UBERON:0001160
intersection_of: UBERON:0000325 ! gastric gland
intersection_of: part_of UBERON:0001160 ! fundus of stomach
relationship: part_of UBERON:0001160 ! fundus of stomach
relationship: part_of UBERON:0004994 ! mucosa of fundus of stomach
[Term]
id: UBERON:0010039
name: food storage organ
def: "An organ of the digestive tract that is capable of retaining and storing food" [UBERON:cjm]
comment: This is a very broad functionally defined grouping class that collects disparate structures from insects to vertebrates
subset: functional_classification
subset: grouping_class
xref: TADS:0000172
xref: TGMA:0001041
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001555 ! digestive tract
relationship: part_of UBERON:0005409 ! gastrointestinal system
[Term]
id: UBERON:0010040
name: stomach non-glandular epithelium
def: "Am epithelium that lines the stomach which lacks glands. In addition to a glandular epithelium, the stomachs of some vertebrates also has a second region characterized by a nonglandular epithelium, devoid of gastric glands." [ISBN10:0073040584]
comment: Editor notes: OWL definition to be added later. Taxon notes: this region may develop from the base of the esophagus (some herbivores) - in rodents, loss of the gastric glands in the mucosa leavea a nonglandular epithelial stomach in which smooth muscle contractions knead and mix digesta. This can be keratinized.
synonym: "stomach aglandular epithelium" EXACT []
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Mammalian_Stomachs_remake.png/650px-Mammalian_Stomachs_remake.png
is_a: UBERON:0001276 ! epithelium of stomach
[Term]
id: UBERON:0010041
name: median ovary
comment: Taxon notes: In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo[Wikipedia:Ovary#In_other_animals]
is_a: UBERON:0000992 ! female gonad
[Term]
id: UBERON:0010042
name: 1st arch mesenchyme
synonym: "mesenchyme of 1st arch" EXACT [EMAPA:16128]
xref: EMAPA:16128
is_a: UBERON:0009494 ! pharyngeal arch mesenchymal region
relationship: part_of UBERON:0004362
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0004362 ! pharyngeal arch 1
relationship: part_of UBERON:0004362 ! pharyngeal arch 1
[Term]
id: UBERON:0010045
name: 1st arch maxillary mesenchyme
xref: EHDAA2:0000041
is_a: UBERON:0010042 ! 1st arch mesenchyme
relationship: part_of UBERON:0007238
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0007238 ! 1st arch maxillary component
relationship: part_of UBERON:0007238 ! 1st arch maxillary component
[Term]
id: UBERON:0010046
name: entire pharyngeal arch associated mesenchyme
def: "The sum total of mesenchymal tissue in the pharyngeal arch region." [UBERON:cjm]
synonym: "associated mesenchyme of pharyngeal region" EXACT [EMAPA:16550]
synonym: "entire branchial arch associated mesenchyme" EXACT [UBERON:cjm]
synonym: "pharyngeal arch associated mesenchyme" EXACT [EHDAA2:0001459]
xref: EHDAA2:0001459
xref: EMAPA:16550
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
relationship: has_developmental_contribution_from UBERON:0003099 {source="cjm"} ! cranial neural crest
relationship: part_of UBERON:0008814 {source="EHDAA2"} ! pharyngeal system
[Term]
id: UBERON:0010047
name: oral gland
def: "Gland of the epithelium lining the oral cavity. The most common are the salivary glands." [ISBN10:0073040584]
comment: Note that Kardong classifies lacrimal glands here
is_a: UBERON:0002365 ! exocrine gland
is_a: UBERON:0003408 ! gland of gut
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000165 ! mouth
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0010048
name: Duvernoy's gland
def: "A gland situated on the upper lip found in non-venomous snakes. Releases secretion via duct adjacent to posterior maxillary teeth." [ISBN10:0073040584, Wikipedia:Duvernoy's_gland]
property_value: "homologous_to" UBERON:0008976
is_a: UBERON:0010047 ! oral gland
[Term]
id: UBERON:0010049
name: supralabial gland
def: "Glandular tissue present in lips of reptiles." [ISBN10:0073040584, Wikipedia:Duvernoy's_gland]
is_a: UBERON:0010047 ! oral gland
[Term]
id: UBERON:0010050
name: infralabial gland
def: "Glandular tissue present in lips of reptiles." [ISBN10:0073040584, Wikipedia:Duvernoy's_gland]
is_a: UBERON:0010047 ! oral gland
[Term]
id: UBERON:0010051
name: dorsal patch of Leydig's organ
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000040 ! Leydig's organ
[Term]
id: UBERON:0010052
name: mucosa of dorsum of tongue
comment: Editor notes: check surface terms. Development notes: develops fungiform papillae by WNT induction at 11 weeks pc in human. Filiform papillae develop later. ISBN10:1607950324
synonym: "mucosa of dorsal surface of tongue" EXACT []
xref: FMA:74871
xref: SCTID:245835003
is_a: UBERON:0005020 ! mucosa of tongue
relationship: part_of UBERON:0009471
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0009471 ! dorsum of tongue
relationship: part_of UBERON:0009471 ! dorsum of tongue
[Term]
id: UBERON:0010053
name: echolocation organ
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0010054
name: malleus cartilage condensation
xref: EMAPA:18229
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0006262 ! malleus pre-cartilage condensation
[Term]
id: UBERON:0010055
name: stapes cartilage condensation
comment: Editor notes: TODO - check relationship to Recihert's. Taxon notes: The stapes is homologous to the hyomandibula. In this ontology, we use the class 'hyomandibular cartilage' generally to include the future stapes, the future hyomandibular bone of teleosts and the unossified cartilage in sharks.
xref: EMAPA:18230
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0005689 ! 2nd arch mesenchyme
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
is_a: UBERON:0009506 ! associated mesenchyme of middle ear
is_a: UBERON:0009891 ! facial mesenchyme
is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest
is_a: UBERON:0011607 {source="http://people.eku.edu/ritchisong/342notes4.htm"} ! hyomandibular cartilage
relationship: develops_from UBERON:0006294 ! stapes pre-cartilage condensation
relationship: part_of UBERON:0001686 ! auditory ossicle
[Term]
id: UBERON:0010056
name: future tongue
xref: EHDAA2:0000696
xref: EHDAA:2951
is_a: UBERON:0003103 {source="EHDAA2"} ! compound organ
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0001723
intersection_of: UBERON:0003103 ! compound organ
intersection_of: develops_into UBERON:0001723 ! tongue
relationship: develops_into UBERON:0001723 ! tongue
relationship: part_of UBERON:0000166 {source="EHDAA2"} ! oral opening
relationship: part_of UBERON:0001042 {source="EHDAA"} ! chordate pharynx
[Term]
id: UBERON:0010057
name: hypopharyngeal eminence
synonym: "hypobranchial eminence" EXACT [EMAPA:17352, OBOL:automatic]
xref: EHDAA2:0000799
xref: EMAPA:17352
xref: SCTID:361420009
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance
relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue
[Term]
id: UBERON:0010059
name: hypoglossal cord
xref: EHDAA2:0004610
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002036 {source="EHDAA2"} ! striated muscle tissue
relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue
[Term]
id: UBERON:0010060
name: pharyngeal opening of pharyngotympanic tube
def: "On the lateral wall of the nasal part of the pharynx is the pharyngeal opening of auditory tube (pharyngeal ostium), somewhat triangular in shape, and bounded behind by a firm prominence, the torus or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane." [Wikipedia:Pharyngeal_opening_of_auditory_tube]
synonym: "ostium pharyngeum tubae auditivae" EXACT [FMA:TA]
synonym: "ostium pharyngeum tubae auditivae" RELATED LATIN [Wikipedia:Pharyngeal_opening_of_auditory_tube]
synonym: "ostium pharyngeum tubae auditoriae" EXACT [FMA:TA]
synonym: "pharyngeal opening of auditory tube" EXACT [FMA:54979]
synonym: "pharyngeal opening of eustachian tube" EXACT [FMA:54979]
synonym: "pharyngeal orifice of auditory tube" EXACT [FMA:54979]
synonym: "pharyngeal orifice of eustachian tube" EXACT [FMA:54979]
synonym: "pharyngeal orifice of pharyngotympanic tube" EXACT [FMA:54979]
synonym: "pharyngeal ostium" RELATED [Wikipedia:Pharyngeal_opening_of_auditory_tube]
synonym: "pharyngeal ostium of auditory tube" EXACT [FMA:54979]
synonym: "pharyngeal ostium of eustachian tube" EXACT [FMA:54979]
synonym: "pharyngeal ostium of pharyngotympanic tube" EXACT [FMA:54979]
synonym: "pharyngeal tubal ostium" EXACT [FMA:54979]
xref: FMA:54979
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/Gray1029.png
xref: SCTID:368945008
is_a: UBERON:0000464 ! anatomical space
relationship: continuous_with UBERON:0010061 ! lumen of nasopharynx
[Term]
id: UBERON:0010061
name: lumen of nasopharynx
synonym: "nasopharyngeal luman" EXACT []
synonym: "nasopharynx cavity" EXACT []
synonym: "nasopharynx lumen" EXACT [FMA:55094]
xref: FMA:55094
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001731 ! cavity of pharynx
relationship: surrounded_by UBERON:0001728 {source="FMA"} ! nasopharynx
[Term]
id: UBERON:0010062
name: pharyngotympanic tube epithelium
synonym: "auditory tube epithelium" EXACT [EHDAA2:0004117]
synonym: "eustachian tube epithelium" EXACT [UBERON:cjm]
xref: EHDAA2:0004117
is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from_part_of UBERON:0010020 {source="EHDAA2"} ! tubotympanic recess epithelium
relationship: part_of UBERON:0002393 {source="cjm"} ! pharyngotympanic tube
[Term]
id: UBERON:0010063
name: tympanic cavity epithelium
xref: EHDAA2:0004116
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from_part_of UBERON:0010020 {source="EHDAA2"} ! tubotympanic recess epithelium
relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear
[Term]
id: UBERON:0010064
name: open anatomical space
def: "An anatomical space with at least one opening to another space or the exterior." [AEO:0000221]
xref: EHDAA2:0004616
is_a: UBERON:0000464 {source="EHDAA2"} ! anatomical space
[Term]
id: UBERON:0010065
name: auditory meatus epithelium
xref: EHDAA2:0004114
is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0005872 {source="EHDAA2", source="PMID:16313389"} ! 1st arch pharyngeal cleft
relationship: part_of UBERON:0001691 {source="EHDAA2"} ! external ear
[Term]
id: UBERON:0010066
name: tympanic plate
def: "The tympanic part of the temporal bone is a curved plate of bone lying below the squama and in front of the mastoid process." [Wikipedia:Tympanic_part_of_the_temporal_bone]
synonym: "pars tympanica" RELATED [Wikipedia:Tympanic_part_of_the_temporal_bone]
synonym: "pars tympanica (os temporale)" EXACT [FMA:52880]
synonym: "pars tympanica ossis temporalis" RELATED LATIN [Wikipedia:Tympanic_part_of_the_temporal_bone]
synonym: "tympanic bone" RELATED [Wikipedia:Tympanic_part_of_the_temporal_bone]
synonym: "tympanic part" RELATED [Wikipedia:Tympanic_part_of_the_temporal_bone]
synonym: "tympanic part of temporal bone" EXACT [FMA:52880]
xref: FMA:52880
xref: http://upload.wikimedia.org/wikipedia/commons/9/96/Gray137.png
xref: SCTID:138773005
property_value: "homologous_to" UBERON:0011079
is_a: UBERON:0005913 {source="cjm"} ! zone of bone organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0002218 ! tympanic ring
relationship: part_of UBERON:0001678 ! temporal bone
[Term]
id: UBERON:0010069
name: outer epithelial layer of tympanic membrane
def: "A portion of the external acoustic meatus epithelium which makes up the outer (cuticular) layer of the tympanic membrane" [PMID:11237469, UBERON:cjm]
synonym: "cuticular stratum of tympanic membrane" EXACT [FMA:56819]
synonym: "outer cuticular layer of tympanic membrane" EXACT [FMA:56819]
synonym: "outer layer of tympanic membrane" EXACT []
synonym: "tympanic membrane external acoustic meatus epithelial component" EXACT [UBERON:cjm]
xref: FMA:56819
xref: SCTID:39725007
is_a: UBERON:0009647 ! tympanic membrane epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001352
intersection_of: UBERON:0009647 ! tympanic membrane epithelium
intersection_of: part_of UBERON:0001352 ! external acoustic meatus
relationship: part_of UBERON:0001352 ! external acoustic meatus
[Term]
id: UBERON:0010070
name: intermediate layer of tympanic membrane
def: "The intermediate fibrous layer of the tympanic membrane." [https://sourceforge.net/tracker/?func=detail&aid=3468783&group_id=76834&atid=1205376, PMID:11237469]
comment: AO notes: check MA
synonym: "connective tissue layer of tympanic membrane" EXACT [FMA:56830]
synonym: "fibrous layer of tympanic membrane" EXACT [FMA:56830]
synonym: "fibrous stratum of tympanic membrane" EXACT [FMA:56830]
synonym: "intermediate fibrous layer of tympanic membrane" EXACT [FMA:56830]
xref: FMA:56830
xref: MA:0001223
xref: SCTID:44692008
is_a: UBERON:0010071 {source="FMA"} ! layer of tympanic membrane
[Term]
id: UBERON:0010071
name: layer of tympanic membrane
comment: In mammals, this class groups together the two epithelial layers plus the intermediate fibrous layer
subset: grouping_class
synonym: "tympanic membrane layer" EXACT [FMA:56732]
xref: FMA:56732
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002364 ! tympanic membrane
[Term]
id: UBERON:0010074
name: chromaffin system
def: "The cells of the body which stain with chromium salts. They occur along the sympathetic nerves, in the adrenal gland, and in various other organs." [MESH:A.06.224]
comment: Taxon notes: in adult cylostomes and teleosts, the interrenal bodies are separate from chromaffin bodies
synonym: "argentaffin system" RELATED [MESH:A.06.224]
synonym: "chromaffin tissue" RELATED []
xref: FMA:79645
xref: MESH:A.06.224
property_value: "homologous_to" UBERON:0001236
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0002342 {source="Kardong", source="CL"} ! neural crest
relationship: part_of UBERON:0000949 {source="cjm"} ! endocrine system
[Term]
id: UBERON:0010075
name: sacral neural crest
def: "One of the 5 distinct and partially overlapping functional domains of the premigratory neural crest. The vagal and sacral neural crest cells develop into the ganglia of the enteric nervous system, also known as the parasympathetic ganglia." [http://www.ncbi.nlm.nih.gov/books/NBK10065/, XB:curator]
xref: XAO:0004192
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0010076
name: network of trabecular spaces in bone tissue
def: "Tissue cavity consisting of intercommunicating trabecular spaces in the cancellous bone." [FMA:259332]
synonym: "trabecular network of bone tissue" EXACT [FMA:259332]
xref: FMA:259332
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0008867
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: part_of UBERON:0008867 ! trabecular network of bone
relationship: part_of UBERON:0008867 ! trabecular network of bone
[Term]
id: UBERON:0010077
name: cuboidal epithelium
comment: AO notes: in NCIT this is glandular
xref: ncithesaurus:Cuboidal_Epithelium
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0010078
name: optic choroid vascular plexus
alt_id: ZFA:0005228
comment: Editor notes: to be verified
synonym: "capillary lamina of choroid or choriocapillaris" EXACT [XAO:0004176]
synonym: "choroid vasculature" RELATED [ZFA:0005094]
synonym: "CVP" EXACT [ZFA:0005094]
synonym: "optic choroid vascular plexus" RELATED [XAO:0004176]
xref: TAO:0005094
xref: XAO:0004176
xref: ZFA:0005094
property_value: UBPROP:0000001 "Develops adjacent to the pigment epithelium of the eye. The choroidal plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. Isogai et al. 2001.[TAO]" xsd:string
is_a: UBERON:0002203 {source="ZFA"} ! vasculature of eye
is_a: UBERON:0005629 {source="XAO"} ! vascular plexus
relationship: part_of UBERON:0001776 {source="ZFA"} ! choroid
relationship: part_of UBERON:0002200 {source="XAO"} ! vasculature of head
[Term]
id: UBERON:0010081
name: future common hepatic duct
xref: EHDAA2:0000595
is_a: UBERON:0003703 ! extrahepatic bile duct
is_a: UBERON:0003914 ! epithelial tube
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0007497 ! developing epithelial placode
relationship: develops_into UBERON:0001175
intersection_of: UBERON:0003703 ! extrahepatic bile duct
intersection_of: develops_into UBERON:0001175 ! common hepatic duct
relationship: develops_from UBERON:0005604 ! hepatic duct extrahepatic part
relationship: develops_into UBERON:0001175 ! common hepatic duct
[Term]
id: UBERON:0010082
name: future corpus striatum
xref: EHDAA2:0000596
is_a: UBERON:0000481 ! multi-tissue structure
relationship: develops_into UBERON:0000369
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: develops_into UBERON:0000369 ! corpus striatum
relationship: develops_into UBERON:0000369 ! corpus striatum
[Term]
id: UBERON:0010083
name: future dermis
xref: EHDAA2:0000598
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_into UBERON:0002067
intersection_of: UBERON:0004120 ! mesoderm-derived structure
intersection_of: develops_into UBERON:0002067 ! dermis
relationship: develops_into UBERON:0002067 ! dermis
relationship: part_of UBERON:0002199 ! integument
[Term]
id: UBERON:0010084
name: future diaphragm
xref: EHDAA2:0000599
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: develops_into UBERON:0001103
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: develops_into UBERON:0001103 ! diaphragm
relationship: develops_into UBERON:0001103 ! diaphragm
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0010090
name: future falx cerebri
xref: EHDAA2:0000608
is_a: UBERON:0005423 ! developing anatomical structure
is_a: UBERON:0007524 ! dense mesenchyme tissue
relationship: develops_into UBERON:0006059
intersection_of: UBERON:0005423 ! developing anatomical structure
intersection_of: develops_into UBERON:0006059 ! falx cerebri
relationship: develops_into UBERON:0006059 ! falx cerebri
[Term]
id: UBERON:0010091
name: future hindbrain meninges
xref: EHDAA2:0000610
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0007524 ! dense mesenchyme tissue
relationship: develops_into UBERON:0003291
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: develops_into UBERON:0003291 ! meninx of hindbrain
relationship: develops_into UBERON:0003291 ! meninx of hindbrain
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0010092
name: future metencephalon
xref: EHDAA2:0000623
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0001895
intersection_of: UBERON:0005423 ! developing anatomical structure
intersection_of: develops_into UBERON:0001895 ! metencephalon
relationship: develops_into UBERON:0001895 ! metencephalon
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0010096
name: future myelencephalon
xref: EHDAA2:0000640
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0005290
intersection_of: UBERON:0005423 ! developing anatomical structure
intersection_of: develops_into UBERON:0005290 ! myelencephalon
relationship: develops_into UBERON:0005290 ! myelencephalon
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0010113
name: future membranous labyrinth
xref: EHDAA2:0000899
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_into UBERON:0001849
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: develops_into UBERON:0001849 ! membranous labyrinth
relationship: develops_from UBERON:0005641 ! otocyst epithelium
relationship: develops_into UBERON:0001849 ! membranous labyrinth
relationship: part_of UBERON:0001846 ! internal ear
relationship: part_of UBERON:0004637 ! otic capsule
[Term]
id: UBERON:0010115
name: future dura mater
xref: EHDAA2:0004317
is_a: UBERON:0002360 ! meninx
relationship: develops_into UBERON:0002363
intersection_of: UBERON:0002360 ! meninx
intersection_of: develops_into UBERON:0002363 ! dura mater
relationship: develops_into UBERON:0002363 ! dura mater
[Term]
id: UBERON:0010122
name: future caudate nucleus
comment: TODO: dev from future corpus striatum
xref: EHDAA2:0004461
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! brain grey matter
relationship: develops_into UBERON:0001873
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: develops_into UBERON:0001873 ! caudate nucleus
relationship: develops_into UBERON:0001873 ! caudate nucleus
[Term]
id: UBERON:0010123
name: future facial nucleus
xref: EHDAA2:0004639
is_a: UBERON:0002020 ! gray matter of neuraxis
relationship: develops_into UBERON:0000127
intersection_of: UBERON:0002020 ! gray matter of neuraxis
intersection_of: develops_into UBERON:0000127 ! facial nucleus
relationship: develops_into UBERON:0000127 ! facial nucleus
[Term]
id: UBERON:0010124
name: future inferior salivatory nucleus
comment: TODO - devfrom
xref: EHDAA2:0004643
is_a: UBERON:0002020 ! gray matter of neuraxis
relationship: develops_into UBERON:0002872
intersection_of: UBERON:0002020 ! gray matter of neuraxis
intersection_of: develops_into UBERON:0002872 ! inferior salivatory nucleus
relationship: develops_into UBERON:0002872 ! inferior salivatory nucleus
[Term]
id: UBERON:0010125
name: future superior salivatory nucleus
xref: EHDAA2:0004644
is_a: UBERON:0002020 ! gray matter of neuraxis
relationship: develops_into UBERON:0002149
intersection_of: UBERON:0002020 ! gray matter of neuraxis
intersection_of: develops_into UBERON:0002149 ! superior salivatory nucleus
relationship: develops_into UBERON:0002149 ! superior salivatory nucleus
[Term]
id: UBERON:0010126
name: future nucleus ambiguus
xref: EHDAA2:0004647
is_a: UBERON:0002020 ! gray matter of neuraxis
relationship: develops_into UBERON:0001719
intersection_of: UBERON:0002020 ! gray matter of neuraxis
intersection_of: develops_into UBERON:0001719 ! nucleus ambiguus
relationship: develops_into UBERON:0001719 ! nucleus ambiguus
[Term]
id: UBERON:0010127
name: future dorsal motor nucleus of vagus
xref: EHDAA2:0004650
is_a: UBERON:0002020 ! gray matter of neuraxis
relationship: develops_into UBERON:0002870
intersection_of: UBERON:0002020 ! gray matter of neuraxis
intersection_of: develops_into UBERON:0002870 ! dorsal motor nucleus of vagus nerve
relationship: develops_into UBERON:0002870 ! dorsal motor nucleus of vagus nerve
[Term]
id: UBERON:0010128
name: future pterygopalatine ganglion
synonym: "future Meckel ganglion" EXACT [MP:0008314, Obol:automatic]
synonym: "future Meckel's ganglion" EXACT [FMA:6965, Obol:automatic]
synonym: "future nasal ganglion" EXACT [MP:0008314, Obol:automatic]
synonym: "future palatine ganglion" EXACT [MP:0008314, Obol:automatic]
synonym: "future pterygopalatine ganglia" EXACT [MP:0008314, Obol:automatic]
synonym: "future sphenopalatine ganglion" EXACT [MP:0008314, Obol:automatic]
synonym: "future sphenopalatine parasympathetic ganglion" EXACT [EHDAA2:0001889, Obol:automatic]
synonym: "future sphenopalatine parasympathetic ganglion" EXACT [EHDAA2:0000673]
xref: EHDAA2:0000673
is_a: UBERON:0001808 ! parasympathetic ganglion
relationship: develops_into UBERON:0003962
intersection_of: UBERON:0000045 ! ganglion
intersection_of: develops_into UBERON:0003962 ! pterygopalatine ganglion
relationship: develops_into UBERON:0003962 ! pterygopalatine ganglion
relationship: part_of UBERON:0001808 {source="EHDAA2"} ! parasympathetic ganglion
[Term]
id: UBERON:0010129
name: femur cartilage condensation
comment: TODO - request EHDAA2
synonym: "femoral cartilage condensation" EXACT [EMAPA:17742]
xref: EMAPA:17742
is_a: UBERON:0005254 ! upper leg mesenchyme
is_a: UBERON:0010885 ! hindlimb bone cartilaginous condensation
relationship: develops_from UBERON:0006234 ! femur pre-cartilage condensation
relationship: develops_into UBERON:0000981 ! femur
relationship: part_of UBERON:0005254 {source="EMAPA"} ! upper leg mesenchyme
[Term]
id: UBERON:0010130
name: autopod plate
def: "the distal elements of the developing limb of vertebrates that will give rise to the pedal appendages (e.g. hand, foot, paw)" [http://sourceforge.net/tracker/?func=detail&aid=3519614&group_id=76834&atid=1109502, MP:0004576]
synonym: "limb plate" EXACT []
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_into UBERON:0002470
intersection_of: UBERON:0002050 ! embryonic structure
intersection_of: develops_into UBERON:0002470 ! autopod region
relationship: develops_from UBERON:0004347 ! limb bud
relationship: develops_into UBERON:0002470 ! autopod region
[Term]
id: UBERON:0010131
name: conducting tissue of heart
synonym: "specialized conducting tissue of heart" EXACT [FMA:83378]
synonym: "specialized muscle tissue of heart" EXACT [FMA:83378]
xref: EHDAA2:0004528
xref: FMA:83378
is_a: UBERON:0001133 {source="FMA"} ! cardiac muscle tissue
[Term]
id: UBERON:0010132
name: gastroduodenal artery
def: "a small blood vessel in the abdomen that supplies blood directly to the pylorus (distal part of the stomach) and proximal part of the duodenum, and indirectly to the pancreatic head (via the anterior and posterior superior pancreaticoduodenal arteries)." [Wikipedia:Gastroduodenal_artery]
synonym: "arteria gastroduodenalis" RELATED LATIN [Wikipedia:Gastroduodenal_artery]
xref: EHDAA2:0000310
xref: EHDAA:8574
xref: FMA:14775
xref: galen:GastroduodenalArtery
xref: http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png
xref: SCTID:244269002
is_a: UBERON:0004573 ! systemic artery
relationship: branch_of UBERON:0005436 {source="FMA"} ! common hepatic artery
relationship: develops_from UBERON:0005436 {source="EHDAA2"} ! common hepatic artery
[Term]
id: UBERON:0010133
name: neuroendocrine gland
xref: MA:0000720
is_a: UBERON:0002368 ! endocrine gland
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001016
intersection_of: UBERON:0002368 ! endocrine gland
intersection_of: part_of UBERON:0001016 ! nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0010134
name: secretory circumventricular organ
xref: MA:0002943
is_a: UBERON:0005408 {source="MA"} ! circumventricular organ
is_a: UBERON:0010133 {source="MA"} ! neuroendocrine gland
[Term]
id: UBERON:0010135
name: sensory circumventricular organ
xref: MA:0002944
is_a: UBERON:0005408 {source="MA"} ! circumventricular organ
relationship: part_of UBERON:0001032 ! sensory system
[Term]
id: UBERON:0010136
name: epithelial sheet
def: "An epithelial sheet is a flat surface consisting of closely packed epithelial cells." [GO:0002011]
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0010137
name: polarized epithelium
def: "A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis." [GO:0001738]
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0010141
name: primitive sex cord of indifferent gonad
comment: Usage notes: note that this represents the indifferent structure.
synonym: "indifferent sex cord" EXACT []
synonym: "primitive sex cords" EXACT [EHDAA2:0004051]
xref: EHDAA2:0004051
is_a: UBERON:0004909 ! epithelium of gonad
is_a: UBERON:0005295 ! sex cord
relationship: part_of UBERON:0009117
intersection_of: UBERON:0005295 ! sex cord
intersection_of: part_of UBERON:0009117 ! indifferent gonad
relationship: develops_from UBERON:0005891 {source="EHDAA2"} ! coelomic epithelium
relationship: part_of UBERON:0009117 ! indifferent gonad
[Term]
id: UBERON:0010143
name: seminal vesicle fluid
comment: AO notes: in ncit, seminal fluid is a subtype of seminal vesicle secretion
synonym: "secretion of seminal vesicle" EXACT [FMA:62969]
synonym: "seminal fluid" RELATED INCONSISTENT []
synonym: "seminal vesicle secretion" EXACT [FMA:62969]
synonym: "vesicular fluid" BROAD []
xref: FMA:62969
xref: MA:0002526
xref: ncithesaurus:Seminal_Fluid
xref: ncithesaurus:Seminal_Vesicle_Secretion
is_a: UBERON:0006530 {source="FMA"} ! seminal fluid
relationship: secreted_by UBERON:0000998
intersection_of: UBERON:0000456 ! bodily secretion
intersection_of: secreted_by UBERON:0000998 ! seminal vesicle
relationship: secreted_by UBERON:0000998 ! seminal vesicle
[Term]
id: UBERON:0010145
name: paraurethral gland
def: "In human anatomy (female), the Skene's glands (also known as the lesser vestibular glands, periurethral glands, skene glands, paraurethral glands, U-spot, or female prostate) are glands located on the anterior wall of the vagina, around the lower end of the urethra. They drain into the urethra and near the urethral opening. These glands are surrounded with tissue, which includes the part of the clitoris that reaches up inside the vagina and swells with blood during sexual arousal." [Wikipedia:Skene%27s_gland]
synonym: "female prostate" EXACT [PMID:10668204, Wikipedia:Skene%27s_gland]
synonym: "glandulae vestibulares minores" RELATED LATIN [Wikipedia:Skene%27s_gland]
synonym: "para-urethral gland" EXACT [FMA:20083]
synonym: "periurethral gland" EXACT [Wikipedia:Skene%27s_gland]
synonym: "Skene gland" EXACT []
synonym: "Skene's gland" EXACT [FMA:20083]
synonym: "U-spot" RELATED [Wikipedia:Skene%27s_gland]
xref: FMA:20083
xref: http://upload.wikimedia.org/wikipedia/commons/b/b8/Skenes_gland.jpg
xref: ncithesaurus:Paraurethral_Gland
xref: SCTID:264125007
property_value: "homologous_to" UBERON:0002367
is_a: UBERON:0005398 ! female reproductive gland
relationship: part_of UBERON:0000474 {source="FMA"} ! female reproductive system
[Term]
id: UBERON:0010146
name: paraurethral duct
def: "The Skene's ducts are a pair of ducts leading from the Skene's glands to the surface of the vulva, to the left and right of the urethral opening. Like the Skene's glands, they are named after Alexander Skene." [Wikipedia:Skene%27s_ducts]
synonym: "ductus paraurethrales urethrae femininae" RELATED LATIN [Wikipedia:Skene%27s_ducts]
synonym: "female prostate duct" EXACT [PMID:10668204]
synonym: "periurethral duct" EXACT []
synonym: "Skene's duct" EXACT [FMA:21445]
xref: FMA:21445
xref: http://upload.wikimedia.org/wikipedia/commons/b/b8/Skenes_gland.jpg
property_value: "homologous_to" UBERON:0002485
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0010145
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0010145 ! paraurethral gland
relationship: part_of UBERON:0010145 ! paraurethral gland
[Term]
id: UBERON:0010147
name: male accessory sex gland
def: "Any gland, other than the gonad, associated with the genital tract, such as the ampulla of the ductus deferens and the bulbourethral, prostate and vesicular glands of the male." [BTO:0004798]
xref: BTO:0004798
is_a: UBERON:0005399 {source="BTO"} ! male reproductive gland
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0010148
name: mating plug
def: "A gelatinous secretion used in the mating of some species. It is deposited by a male into a female genital tract and later hardens into a plug or glues the tract together." [Wikipedia:Mating_plug]
synonym: "copulatory plug" EXACT [SPD:0000547]
xref: SPD:0000547
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0010150
name: duct of major vestibular gland
def: "One of a pair of ducts leading from the Bartholin's glands to the surface of the vulva" [Wikipedia:Bartholin's_duct]
synonym: "Bartholin's duct" RELATED INCONSISTENT [Wikipedia:Bartholin's_duct]
synonym: "duct of greater vestibular gland" EXACT [FMA:20088]
synonym: "greater vestibular gland duct" EXACT [FMA:20088]
xref: FMA:20088
property_value: "homologous_to" UBERON:0010151
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0000460
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0000460 ! major vestibular gland
relationship: part_of UBERON:0000460 ! major vestibular gland
[Term]
id: UBERON:0010151
name: duct of bulbourethral gland
synonym: "bulbourethral gland duct" EXACT [FMA:20091]
synonym: "duct of bulbo-urethral gland" EXACT [FMA:20091]
synonym: "ductus glandulae bulbourethralis" EXACT [FMA:TA]
xref: FMA:20091
xref: SCTID:279709005
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005904 ! duct of male reproductive system
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0010146 ! paraurethral duct
relationship: part_of UBERON:0002366
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0002366 ! bulbo-urethral gland
relationship: part_of UBERON:0002366 ! bulbo-urethral gland
[Term]
id: UBERON:0010152
name: skin mucus
comment: Editor notes: Consider making a specific class e.g. mucus coating to represent the entire coating rather than an portion of secretion of a mucus gland in the skin. Candidate definition - "The epidermal mucus of fish regulates swimming speed by controlling the hydrodynamic resistance of the skin surface. The mucus is also presumed to serve as a defence against pathogenic organisms and is intimately associated with osmoregulation." [BTO:0005082]
synonym: "epidermal mucus" RELATED [BTO:0005082]
xref: BTO:0005082
is_a: UBERON:0000456 {source="BTO"} ! bodily secretion
relationship: develops_from UBERON:0000414 {source="BTO"} ! mucous gland
[Term]
id: UBERON:0010153
name: rumen papilla
synonym: "rumen papillae" EXACT PLURAL []
is_a: UBERON:0009034 ! stomach region
relationship: part_of UBERON:0008285 ! rumen epithelium
[Term]
id: UBERON:0010154
name: inner lining mucosa of the abomasum
def: "the inner mucosa of the fourth stomach chamber of a ruminant produces rennet." [Wikipedia:Rennet]
synonym: "rennet" RELATED [BTO:0001168]
xref: BTO:0001168
is_a: UBERON:0001199 ! mucosa of stomach
relationship: part_of UBERON:0007358 {source="BTO"} ! abomasum
[Term]
id: UBERON:0010155
name: parietomastoid suture
def: "unites the mastoid process of the temporal with the region of the mastoid angle of the parietal[WP:Squamosal_suture]." []
synonym: "parieto-mastoid suture of skull" EXACT []
synonym: "parietomastoid suture of skull" EXACT [FMA:52947]
xref: FMA:52947
xref: SCTID:136753005
is_a: UBERON:0003685 {source="FMA"} ! cranial suture
relationship: connects UBERON:0000210 ! tetrapod parietal bone
relationship: connects UBERON:0001678 ! temporal bone
[Term]
id: UBERON:0010156
name: sphenofrontal suture
def: "The Sphenofrontal suture is the cranial suture between the sphenoid bone and the frontal bone." [Wikipedia:Sphenofrontal_suture]
synonym: "frontosphenoid suture" EXACT [FMA:52938]
synonym: "spheno-frontal suture" RELATED []
synonym: "sphenofrontal" RELATED [Wikipedia:Sphenofrontal_suture]
synonym: "sphenofrontal suture of skull" EXACT [FMA:52938]
synonym: "Sutura sphenofrontalis" RELATED LATIN [Wikipedia:Sphenofrontal_suture]
synonym: "sutura sphenofrontalis" RELATED [Wikipedia:Sphenofrontal_suture]
xref: FMA:52938
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png
xref: SCTID:136349005
is_a: UBERON:0003685 ! cranial suture
relationship: connects UBERON:0000209
relationship: connects UBERON:0001677
intersection_of: UBERON:0003685 ! cranial suture
intersection_of: connects UBERON:0000209 ! tetrapod frontal bone
intersection_of: connects UBERON:0001677 ! sphenoid bone
relationship: connects UBERON:0000209 ! tetrapod frontal bone
relationship: connects UBERON:0001677 ! sphenoid bone
[Term]
id: UBERON:0010157
name: sphenoparietal suture
def: "The Sphenoparietal suture is the cranial suture between the sphenoid bone and the parietal bone." [Wikipedia:Sphenoparietal_suture]
synonym: "spheno-parietal suture" EXACT []
synonym: "sphenoparietal suture of skull" EXACT [FMA:52945]
synonym: "Sutura sphenoparietalis" RELATED LATIN [Wikipedia:Sphenoparietal_suture]
xref: FMA:52945
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png
xref: SCTID:136551005
is_a: UBERON:0003685 ! cranial suture
relationship: connects UBERON:0000210
relationship: connects UBERON:0001677
intersection_of: UBERON:0003685 ! cranial suture
intersection_of: connects UBERON:0000210 ! tetrapod parietal bone
intersection_of: connects UBERON:0001677 ! sphenoid bone
relationship: connects UBERON:0000210 ! tetrapod parietal bone
relationship: connects UBERON:0001677 ! sphenoid bone
[Term]
id: UBERON:0010158
name: sphenozygomatic suture
def: "The Sphenozygomatic suture is the cranial suture between the sphenoid bone and the zygomatic bone." [Wikipedia:Sphenozygomatic_suture]
synonym: "sphenozygomatica suture of skull" EXACT [FMA:52956]
synonym: "sutura sphenozygomatica" RELATED LATIN [Wikipedia:Sphenozygomatic_suture]
xref: FMA:52956
xref: http://upload.wikimedia.org/wikipedia/commons/a/a7/Gray189.png
xref: SCTID:368980007
is_a: UBERON:0003685 ! cranial suture
relationship: connects UBERON:0001677
relationship: connects UBERON:0001683
intersection_of: UBERON:0003685 ! cranial suture
intersection_of: connects UBERON:0001677 ! sphenoid bone
intersection_of: connects UBERON:0001683 ! zygomatic bone
relationship: connects UBERON:0001677 ! sphenoid bone
relationship: connects UBERON:0001683 ! zygomatic bone
[Term]
id: UBERON:0010159
name: occipitomastoid suture
def: "The occipitomastoid suture is the cranial suture between the occipital bone and the mastoid portion of the temporal bone. It is continuous with the lambdoidal suture." [Wikipedia:Occipitomastoid_suture]
synonym: "occipito-mastoid suture" RELATED [Wikipedia:Occipitomastoid_suture]
synonym: "occipitomastoid suture of skull" EXACT [FMA:52934]
synonym: "sutura occipitomastoidea" RELATED [Wikipedia:Occipitomastoid_suture]
synonym: "sutura occipitomastoidea" RELATED LATIN [Wikipedia:Occipitomastoid_suture]
xref: FMA:52934
xref: http://upload.wikimedia.org/wikipedia/commons/d/df/Occipitomastoideus.PNG
xref: SCTID:134136005
is_a: UBERON:0003685 {source="FMA"} ! cranial suture
relationship: connects UBERON:0001676 ! occipital bone
relationship: connects UBERON:0001678 ! temporal bone
[Term]
id: UBERON:0010160
name: lumen of lymphatic vessel
synonym: "lumen of lymphatic duct" EXACT [FMA:59681]
synonym: "lymphatic vessel lumen" EXACT [FMA:59681]
xref: FMA:59681
is_a: UBERON:0002553 ! anatomical cavity
relationship: surrounded_by UBERON:0001473
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: surrounded_by UBERON:0001473 ! lymphatic vessel
relationship: surrounded_by UBERON:0001473 ! lymphatic vessel
[Term]
id: UBERON:0010161
name: lumen of blood vessel
synonym: "blood vessel lumen" EXACT []
xref: SCTID:91747007
is_a: UBERON:0002553 ! anatomical cavity
is_a: UBERON:0005082 ! tube lumen
relationship: surrounded_by UBERON:0001981
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: surrounded_by UBERON:0001981 ! blood vessel
relationship: surrounded_by UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0010162
name: tail tip
synonym: "end of tail" RELATED [MA:0002848]
xref: MA:0002848
xref: XAO:0004057
is_a: UBERON:0000479 {source="XAO"} ! tissue
relationship: part_of UBERON:0007812 {source="MA"} ! post-anal tail
[Term]
id: UBERON:0010163
name: eyebrow
def: "The eyebrow is an area of thick, delicate hairs above the eye that follows the shape of the lower margin of the brow ridges. Their main function is to protect the eye, but they are also important to human communication and facial expression. It is not uncommon for people to modify their eyebrows by means of hair addition or removal, make up, or piercings." [Wikipedia:Eyebrow]
comment: AO notes: in ncit, this is an "eye appendage"
subset: phenotype_rcn
synonym: "supercilium" RELATED LATIN [Wikipedia:Eyebrow]
xref: FMA:54237
xref: http://upload.wikimedia.org/wikipedia/commons/2/29/Eyes_chris.jpg
xref: MESH:A.01.456.505.420.338
xref: ncithesaurus:Eyebrow
xref: SCTID:265781000
is_a: UBERON:0010165 {source="FMA"} ! collection of hair on face
relationship: part_of UBERON:0004088 ! ocular region
[Term]
id: UBERON:0010164
name: collection of hairs
synonym: "hairs" EXACT [FMA:70752]
synonym: "hairs set" EXACT [FMA:70752]
synonym: "pili" EXACT [FMA:TA]
synonym: "set of hairs" EXACT [FMA:70752]
xref: FMA:70752
is_a: UBERON:0000477 ! anatomical cluster
relationship: composed_primarily_of UBERON:0001037
intersection_of: UBERON:0000477 ! anatomical cluster
intersection_of: composed_primarily_of UBERON:0001037 ! strand of hair
relationship: composed_primarily_of UBERON:0001037 ! strand of hair
[Term]
id: UBERON:0010165
name: collection of hair on face
subset: phenotype_rcn
synonym: "facial hair" RELATED []
synonym: "facial hairs set" EXACT [FMA:70741]
synonym: "set of facial hairs" EXACT [FMA:70741]
xref: FMA:70741
is_a: UBERON:0010164 ! collection of hairs
relationship: part_of UBERON:0001456
intersection_of: UBERON:0010164 ! collection of hairs
intersection_of: part_of UBERON:0001456 ! face
relationship: composed_primarily_of UBERON:0010171 ! strand of hair of face
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0010166
name: coat of hair
subset: phenotype_rcn
synonym: "coat" BROAD []
synonym: "coat pelt" RELATED []
synonym: "fur coat" RELATED []
synonym: "hair coat" EXACT []
synonym: "pelage" RELATED []
synonym: "pelt" RELATED []
synonym: "set of coat hairs" EXACT []
xref: ncithesaurus:Coat_Pelt
is_a: UBERON:0010164 ! collection of hairs
[Term]
id: UBERON:0010167
name: beard
def: "the collection of hair that grows on the chin, cheeks and neck of human beings. Usually, only pubescent or adult males are able to grow beards. However, women with hirsutism may develop a beard. When differentiating between upper and lower facial hair, a beard specifically includes the moustache, which refers to hair above the upper lip and around it." [Wikipedia:Beard]
subset: phenotype_rcn
xref: FMA:54240
xref: SCTID:256924005
is_a: UBERON:0010165 {source="FMA"} ! collection of hair on face
[Term]
id: UBERON:0010168
name: collection of eyelashes
synonym: "cilia" EXACT [FMA:TA]
synonym: "eyelashes" EXACT [FMA:70742]
synonym: "eyelashes set" EXACT [FMA:70742]
synonym: "set of eyelashes" EXACT [FMA:70742]
xref: FMA:70742
xref: SCTID:367575006
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010165 ! collection of hair on face
relationship: part_of UBERON:0001702
intersection_of: UBERON:0010165 ! collection of hair on face
intersection_of: part_of UBERON:0001702 ! eyelash
relationship: part_of UBERON:0001702 ! eyelash
[Term]
id: UBERON:0010169
name: moustache
def: "facial hair grown on the outer surface of the upper lip. It may or may not be accompanied by a type of beard, a facial hair style grown and cropped to cover most of the lower half of the face." [Wikipedia:Moustache]
subset: phenotype_rcn
synonym: "mustache" EXACT []
xref: FMA:59652
xref: SCTID:256925006
is_a: UBERON:0010165 {source="FMA"} ! collection of hair on face
relationship: part_of UBERON:0004089 ! midface
[Term]
id: UBERON:0010170
name: region of neural crest
xref: TAO:0000045
xref: ZFA:0000045
property_value: UBPROP:0000001 "A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage. Kimmel et al, 1995.[TAO]" xsd:string
is_a: UBERON:0000480 {source="EHDAA2"} ! anatomical group
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0010171
name: strand of hair of face
synonym: "face hair" EXACT [FMA:54360]
synonym: "face hair strand" EXACT []
synonym: "facial hair" RELATED [FMA:54360]
synonym: "hair of face" EXACT [FMA:54360]
xref: FMA:54360
xref: SCTID:368910000
is_a: UBERON:0001037 ! strand of hair
relationship: part_of UBERON:0001456
intersection_of: UBERON:0001037 ! strand of hair
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0010172
name: bulb of aorta
def: "the portion of the left ventricular outflow tract delineated by the sinotubular ridge superiorly and the bases of the valve leaflets inferiorly; it comprises the aortic sinuses, the aortic valve leaflets, the commissures, and the interleaflet triangles" [MP:0011572]
synonym: "aortic bulb" EXACT [FMA:3740]
synonym: "bulb of ascending aorta" EXACT [FMA:3740]
synonym: "bulbus aortae" EXACT [FMA:TA]
synonym: "root of aorta" EXACT [FMA:3740]
synonym: "supraaortic valve area" EXACT [FMA:3740]
xref: FMA:3740
xref: SCTID:362032000
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001496 {source="FMA"} ! ascending aorta
[Term]
id: UBERON:0010173
name: sinotubular junction
def: "the point in the ascending aorta where the aortic sinuses end and the aorta becomes a tubular structure" [MP:0011572]
synonym: "sinotubular ridge" EXACT [MP:0011572]
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001496 {source="MP"} ! ascending aorta
[Term]
id: UBERON:0010174
name: Schweigger-Seidel sheath
def: "a phagocytic sleeve that is part of a sheathed arteriole of the spleen, and is sometimes referred to as a splenic ellipsoid. It is a spindle-shaped thickening in the walls of the second part of the arterial branches forming the penicilli in the spleen" [PMC:PMC3204613, Wikipedia:Schweigger-Seidel_sheath]
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
relationship: part_of UBERON:0001980 ! arteriole
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0010175
name: nutrient vein
xref: FMA:50780
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0010176
name: nutrient artery
def: "The medullary or nutrient artery, usually accompanied by one or two veins, sends branches upward and downward to the bone marrow, which ramify in the medullary membrane, and give twigs to the adjoining canals." [Wikipedia:Nutrient_artery]
synonym: "a. nutricia, a. nutriens" RELATED LATIN [Wikipedia:Nutrient_artery]
xref: FMA:50779
xref: ncithesaurus:Nutrient_Artery
xref: SCTID:337318006
is_a: UBERON:0004573 {source="FMA"} ! systemic artery
[Term]
id: UBERON:0010181
name: straight venules of kidney
def: "The straight venules of kidney are branches from the plexuses at the apices of the medullary pyramids, formed by the terminations of the arteriae rectae. They run outward in a straight course between the tubes of the medullary substance, and joining, as above stated, the interlobular veins, form venous arcades; these in turn unite and form veins which pass along the sides of the pyramids. Contains fenestrated capillaries." [Wikipedia:Straight_venules_of_kidney]
synonym: "set of straight venules of kidney" EXACT [FMA:72007]
synonym: "venae rectae" RELATED [Wikipedia:Straight_venules_of_kidney]
synonym: "venulae rectae" RELATED [Wikipedia:Straight_venules_of_kidney]
synonym: "venulae rectae of kidney" EXACT [FMA:72007]
synonym: "venulae rectae renis" EXACT [FMA:TA]
synonym: "venulae rectae renis" RELATED LATIN [Wikipedia:Straight_venules_of_kidney]
synonym: "venulae recti" RELATED [Wikipedia:Straight_venules_of_kidney]
xref: FMA:72007
xref: SCTID:245983001
xref: Wikipedia:Straight_venules_of_kidney
is_a: UBERON:0005629 ! vascular plexus
is_a: UBERON:0006544 ! kidney vasculature
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0010182
name: vaginal part of cervix
def: "The vaginal portion of the cervix projects free into the anterior wall of the vagina between the anterior and posterior fornices vaginae" [Wikipedia:Vaginal_portion_of_cervix]
synonym: "portio vaginalis" EXACT []
synonym: "portio vaginalis cervicis" EXACT []
synonym: "portio vaginalis cervicis" RELATED LATIN [Wikipedia:Vaginal_portion_of_cervix]
xref: FMA:77056
xref: http://upload.wikimedia.org/wikipedia/commons/2/27/Illu_female_pelvis.jpg
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000002 {source="FMA"} ! uterine cervix
[Term]
id: UBERON:0010183
name: liver trabecula
def: "A trabecula that is part of a liver" [GO:0060344, Obol:automatic]
synonym: "hepatic trabecula" RELATED []
is_a: UBERON:0000440 ! trabecula
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0002107
intersection_of: UBERON:0000440 ! trabecula
intersection_of: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0010185
name: rete ovarii
comment: Editor note: todo
xref: EMAPA:17966
xref: ncithesaurus:Rete_Ovarii
xref: SCTID:259261007
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0005156 ! reproductive structure
relationship: develops_from UBERON:0005296 ! ovary sex cord
relationship: part_of UBERON:0000992 ! female gonad
[Term]
id: UBERON:0010186
name: male urethral gland
def: "Any of the many glands that branch off the wall of the urethra of male mammals. The glands secrete mucus, which is incorporated into the semen, and are most numerous in the section of the urethra that runs through the penis. [WP,unvetted]." [Wikipedia:Urethral_gland]
synonym: "gland of Littre" EXACT []
synonym: "gland of male urethra" EXACT []
synonym: "glandulae urethrales urethrae masculinae" RELATED LATIN [Wikipedia:Urethral_gland]
synonym: "Littre's gland" EXACT [FMA:21443]
synonym: "male urethra gland" EXACT []
xref: EMAPA:29645
xref: FMA:21443
xref: ncithesaurus:Urethral_Gland
xref: SCTID:303562001
is_a: UBERON:0001338 ! urethral gland
relationship: part_of UBERON:0001333
intersection_of: UBERON:0001338 ! urethral gland
intersection_of: part_of UBERON:0001333 ! male urethra
relationship: part_of UBERON:0001333 ! male urethra
[Term]
id: UBERON:0010187
name: female urethral gland
synonym: "female urethra gland" EXACT []
synonym: "gland of female urethra" EXACT []
synonym: "urethral gland (female)" EXACT [FMA:21444]
xref: EMAPA:29653
xref: FMA:21444
xref: SCTID:279476001
is_a: UBERON:0001338 ! urethral gland
relationship: part_of UBERON:0001334
intersection_of: UBERON:0001338 ! urethral gland
intersection_of: part_of UBERON:0001334 ! female urethra
relationship: part_of UBERON:0001334 ! female urethra
[Term]
id: UBERON:0010188
name: protuberance
def: "A roughly circular bulge in a surface." [EHDAA2:0003250]
xref: AEO:0000205
xref: EHDAA2:0003250
xref: FMA:82506
is_a: UBERON:0003102 {source="EHDAA2"} ! surface structure
[Term]
id: UBERON:0010189
name: right atrium venous valve
comment: AO notes: part_of in EHDAA2. Only child in MA.
synonym: "right venous valve" RELATED [EHDAA2:0001762]
xref: EHDAA2:0001762
xref: EMAPA:17010
xref: EMAPA:17328
xref: MA:0001872
is_a: UBERON:0005208 {source="MA"} ! right atrium valve
[Term]
id: UBERON:0010190
name: pair of dorsal aortae
synonym: "paired dorsal aortae" EXACT [EHDAA2:0000410]
xref: EHDAA2:0000410
xref: MA:0000476
is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure
relationship: part_of UBERON:0010191 {source="EHDAA2"} ! aortic system
[Term]
id: UBERON:0010191
name: aortic system
xref: EHDAA2:0004512
is_a: UBERON:0000480 {source="EHDAA2"} ! anatomical group
[Term]
id: UBERON:0010192
name: genital artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0010193
name: renal portal vein
def: "A portal vein that empties into capillaries within the kidneys." [ISBN10:0073040584]
comment: Function notes: function not well understood. [ISBN10:0073040584]
synonym: "renal portal veins" EXACT PLURAL [ZFA:0000577]
xref: TAO:0000577
xref: ZFA:0000577
is_a: UBERON:0001638 {source="ZFA"} ! vein
is_a: UBERON:0003513 ! trunk blood vessel
relationship: part_of UBERON:0002201 {source="ZFA"} ! vasculature of trunk
[Term]
id: UBERON:0010194
name: hepatic portal system
def: "A portal system that begins in capillaries in the wall of the digestive tract and and runs as the hepatic portal vein to the liver." [ISBN10:0073040584]
synonym: "hepatic-portal system" EXACT [AAO:0010225]
synonym: "portal system of liver" EXACT []
xref: AAO:0010225
property_value: UBPROP:0000001 "Part of the circulatory system which includes the ventral abdominal vein, pelvic veins, and portal vein and collects blood from the pelvic region, liver, gall bladder and stomach.[AAO]" xsd:string
is_a: UBERON:0005806 ! portal system
[Term]
id: UBERON:0010195
name: renal portal system
def: "A portal system that transports blood returning from capillary beds within tail or hindlimbs through paired renal portal veins that empty into capillaries within the kidneys." [ISBN10:0073040584]
comment: Function notes: function not well understood. Taxon notes: present in all classes of vertebrates except mammals; the mammalian kidney has a low pressure vascular network that may be its counterpart [ISBN10:0073040584]
synonym: "portal system of kidney" EXACT []
synonym: "renal-portal system" EXACT [AAO:0010518]
xref: AAO:0010518
property_value: RO:0002161 NCBITaxon:40674
property_value: UBPROP:0000001 "Part of the circulatory system in which the veins of the hindlimb combine to form the pair Jacobson's veins which receive many small vesicles from the kidney and also collects blood from the oviducal vein.[AAO]" xsd:string
is_a: UBERON:0005806 ! portal system
[Term]
id: UBERON:0010197
name: trunk of common carotid artery
def: "The initial part of the entire common carotid artery ending with the point where the artery bifurcates into an external carotid artery and an internal carotid artery." [UBERON:cjm]
synonym: "common carotid arterial trunk" EXACT [FMA:69323]
synonym: "common carotid artery" RELATED INCONSISTENT [EHDAA2:0000306]
xref: EHDAA2:0000306
xref: EMAPA:18610
xref: FMA:69323
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005396 ! carotid artery segment
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches
[Term]
id: UBERON:0010198
name: carotid duct
def: "a portion of the embryonic dorsal aorta between points of juncture with the third and fourth arch arteries; it disappears early in development." [http://www.medilexicon.com/medicaldictionary.php?s=ductus+caroticus]
comment: In amphibians, closes at metamorphosis[Kardong]
synonym: "ductus caroticus" EXACT [EMAPA:17006]
xref: EMAPA:17006
xref: SCTID:340062006
is_a: UBERON:0003513 ! trunk blood vessel
is_a: UBERON:0004573 ! systemic artery
relationship: continuous_with UBERON:0003120 ! aortic arch 3
relationship: continuous_with UBERON:0003121 ! aortic arch 4
relationship: part_of UBERON:0005805 ! dorsal aorta
[Term]
id: UBERON:0010202
name: lateral line
def: "The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear." [Wikipedia:Lateral_line, ZFA:0001469]
synonym: "lateral lines" EXACT PLURAL [ZFA:0001469]
xref: AAO:0011128
xref: TAO:0001469
xref: XAO:0004002
xref: ZFA:0001469
is_a: UBERON:0000479 {source="ZFA"} ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0009128 ! lateral line placode
relationship: part_of UBERON:0002540 {source="ZFA"} ! lateral line system
[Term]
id: UBERON:0010204
name: tail vasculature
comment: AO notes: isa blood vessel in XAO
synonym: "post-vent vasculature" EXACT [ZFA:0005037]
synonym: "tail vasculature" RELATED [ZFA:0005037]
xref: TAO:0005037
xref: XAO:0004151
xref: ZFA:0005037
xref: ZFIN:ZDB-ANAT-051116-21
is_a: UBERON:0002049 ! vasculature
relationship: part_of UBERON:0007812
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0007812 ! post-anal tail
relationship: part_of UBERON:0007812 ! post-anal tail
[Term]
id: UBERON:0010205
name: mesencephalic vein
def: "One of the several veins that drain the mesencephalon; the posterior ones are tributaries to the great cerebral vein; the lateral ones are tributaries to the basal vein. The main veins are: pontomesencephalic vein [TA] (vena pontomesencephalica [TA]), interpeduncular veins [TA] (venae interpedunculares [TA]), intercollicular vein [TA] (vena intercollicularis [TA]), and lateral mesencephalic vein [TA] (vena mesencephalica lateralis [TA])[MedLex]. The major vein of the midbrain, which crosses the midbrain medially to meet it's partner the mesencephalic artery[XAO]." [http://www.medilexicon.com/medicaldictionary.php?t=97378, XAO:0004174]
comment: Editor notes: review this term, check taxon scope; note FMA has specific subtypes
synonym: "vena mesencephalica" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae]
synonym: "venae mesencephalicae" EXACT PLURAL [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae]
xref: SCTID:43225002
xref: TAO:0005092
xref: XAO:0004174
xref: ZFA:0005092
is_a: UBERON:0001638 {source="XAO"} ! vein
[Term]
id: UBERON:0010207
name: nictitating membrane
def: "A fold of the mucous membrane of the conjunctiva in many animals. At rest, it is hidden in the medial canthus. It can extend to cover part or all of the cornea to help clean the cornea." [MESH:A.13.660, Wikipedia:Nictitating_membrane]
comment: Taxon notes: Some reptiles, birds, and sharks have full nictitating membranes; in many mammals, a small, vestigial portion of the membrane remains in the corner of the eye. Some mammals, such as camels, polar bears, seals, and aardvarks, have full nictitating membranes[WP]. Editor notes: We exclude the shark structure for this via a taxon constraint.
synonym: "nictitans" EXACT [http://tolweb.org/Amniota]
synonym: "third eyelid" EXACT [MESH:A.13.660]
xref: http://en.wikipedia.org/wiki/File:Chickenblinking.jpg
xref: MESH:A.13.660
xref: ncithesaurus:Nictitating_Membrane
property_value: RO:0002161 NCBITaxon:9606
is_a: UBERON:0001711 ! eyelid
is_a: UBERON:0010305 ! region of conjunctiva
relationship: part_of UBERON:0001811 ! conjunctiva
[Term]
id: UBERON:0010209
name: plica semilunaris of conjunctiva
def: "The plica semilunaris is a small fold of bulbar conjunctiva on the medial canthus of the eye. It is loose, so that eye movements are not restricted. It is considered a vestigial organ." [Wikipedia:Plica_semilunaris_of_conjunctiva]
synonym: "plica semilunaris (conjunctiva)" EXACT [FMA:59045]
synonym: "plica semilunaris conjunctivae" RELATED LATIN [Wikipedia:Plica_semilunaris_of_conjunctiva]
synonym: "plica semilunaris of the conjunctiva" RELATED [Wikipedia:Plica_semilunaris_of_conjunctiva]
synonym: "semilunar fold of conjunctiva" EXACT [FMA:59045]
xref: FMA:59045
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Gray1205.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Gray1205.png/250px-Gray1205.png
xref: SCTID:280686009
property_value: "homologous_to" UBERON:0010207
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005160 {source="Wikipedia"} ! vestigial structure
relationship: part_of UBERON:0001811 {source="FMA"} ! conjunctiva
[Term]
id: UBERON:0010210
name: blood clot
def: "A semisolid gelatinous mass of coagulated blood that consists of red blood cells, white blood cells, and platelets entrapped in a fibrin network." [BTO:0000102, Wikipedia:Thrombus]
synonym: "thrombus" RELATED [BTO:0000102]
xref: BTO:0000102
xref: galen:BloodClot
is_a: UBERON:0000463 ! portion of organism substance
relationship: develops_from UBERON:0000178 {source="BTO"} ! blood
[Term]
id: UBERON:0010211
name: granulation tissue
def: "Highly vascularized tissue that replaces the initial fibrin clot in a wound. Vascularization is by ingrowth of capillary endothelium from the surrounding vasculature. The tissue is also rich in fibroblasts (that will eventually produce the fibrous tissue) and leucocytes." [BTO:0003257]
xref: BTO:0003257
xref: MESH:A.10.165.450
is_a: UBERON:0002384 {source="BTO"} ! connective tissue
[Term]
id: UBERON:0010212
name: laryngeal apparatus
def: "Apparatus located between the lungs and the buccal cavity. This apparatus is composed of a pair of arytenoid cartilages that are supported by the cricoid ring." [AAO:0000267]
synonym: "laryngeal cartilage system" EXACT [EHDAA2:0000904]
xref: AAO:0000267
xref: EHDAA2:0000904
is_a: UBERON:0000467 {source="EHDAA2"} ! anatomical system
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: composed_primarily_of UBERON:0001739 ! laryngeal cartilage
relationship: part_of UBERON:0001737 {source="EHDAA2"} ! larynx
relationship: part_of UBERON:0008895 ! splanchnocranium
[Term]
id: UBERON:0010213
name: laryngeal pre-cartilage condensation
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0010221 {source="EHDAA2-abstracted"} ! laryngeal associated mesenchyme
relationship: part_of UBERON:0008895 ! splanchnocranium
relationship: part_of UBERON:0010212 {source="EHDAA2-abstracted"} ! laryngeal apparatus
[Term]
id: UBERON:0010214
name: cricoid pre-cartilage condensation
xref: EHDAA2:0000327
is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation
[Term]
id: UBERON:0010215
name: arytenoid swellings
def: "paired primordial elevations, on either side of the embryonic larynx, within which the arytenoid cartilages are formed" [http://www.medilexicon.com/medicaldictionary.php?t=87317]
comment: AO notes - EHDAA2 and EMAPA appear to be inconsistent
xref: EHDAA2:0000146
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005856 {source="EHDAA2"} ! developing mesenchymal condensation
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0010221 {source="EHDAA2"} ! laryngeal associated mesenchyme
relationship: part_of UBERON:0010212 {source="EHDAA2"} ! laryngeal apparatus
[Term]
id: UBERON:0010219
name: thyroid pre-cartilage condensation
xref: EHDAA2:0004088
is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation
[Term]
id: UBERON:0010220
name: arytenoid pre-cartilage condensation
synonym: "arytenoid swelling pre-cartilage condensation" EXACT [EMAPA:17387]
xref: EHDAA2:0000144
xref: EMAPA:17387
xref: VHOG:0000998
is_a: UBERON:0010213 ! laryngeal pre-cartilage condensation
relationship: develops_from UBERON:0010215 {source="EHDAA2"} ! arytenoid swellings
[Term]
id: UBERON:0010221
name: laryngeal associated mesenchyme
comment: Many sources say: thyroid cartilage from arch 4 other laryngeal cartilage (cricoid/arytenoid) from 6?
xref: EHDAA2:0004085
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0002539 {source="Wikipedia"} ! pharyngeal arch
relationship: has_developmental_contribution_from UBERON:0003115 {source="Wikipedia"} ! pharyngeal arch 4
relationship: has_developmental_contribution_from UBERON:0003117 {source="Wikipedia"} ! pharyngeal arch 6
relationship: part_of UBERON:0001737 {source="EHDAA2"} ! larynx
relationship: part_of UBERON:0008895 ! splanchnocranium
[Term]
id: UBERON:0010222
name: anatomical line between pupils
synonym: "interpupillary line" EXACT []
is_a: UBERON:0006800 ! anatomical line
relationship: connects UBERON:0010223 ! left pupil
relationship: connects UBERON:0010224 ! right pupil
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0010223
name: left pupil
synonym: "pupil of left eye" EXACT [FMA:58254]
xref: FMA:58254
xref: SCTID:368597006
is_a: UBERON:0001771 ! pupil
relationship: part_of UBERON:0004548
intersection_of: UBERON:0001771 ! pupil
intersection_of: part_of UBERON:0004548 ! left eye
relationship: part_of UBERON:0004548 ! left eye
[Term]
id: UBERON:0010224
name: right pupil
synonym: "pupil of right eye" EXACT [FMA:58253]
xref: FMA:58253
xref: SCTID:368575009
is_a: UBERON:0001771 ! pupil
relationship: part_of UBERON:0004549
intersection_of: UBERON:0001771 ! pupil
intersection_of: part_of UBERON:0004549 ! right eye
relationship: part_of UBERON:0004549 ! right eye
[Term]
id: UBERON:0010225
name: thalamic complex
xref: EHDAA2:0004469
xref: FMA:258745
is_a: UBERON:0002784 ! regional part of diencephalon
relationship: part_of UBERON:0001894 {source="EHDAA2"} ! diencephalon
[Term]
id: UBERON:0010226
name: future cardiac ventricle
def: "Multi-tissue structure that is part of the heart tube and will become the cardiac ventricle." [ZFA:0001719]
synonym: "presumptive cardiac ventricle heart tube" EXACT [ZFA:0001719]
synonym: "primordial cardiac ventricle" EXACT [FMA:71006]
synonym: "primordial ventricle" EXACT [FMA:71006]
xref: FMA:71006
xref: TAO:0002231
xref: ZFA:0001719
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0004141 {source="ZFA"} ! heart tube
[Term]
id: UBERON:0010227
name: future cardiac atrium
def: "Multi-tissue structure that is part of the heart tube and will become the cardiac atrium." [ZFA:0001718]
synonym: "presumptive atrium heart tube" EXACT [ZFA:0001718]
synonym: "primordial atrium" EXACT [FMA:71005]
synonym: "primordial cardiac atrium" EXACT [FMA:71005]
xref: FMA:71005
xref: TAO:0002228
xref: ZFA:0001718
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_into UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0004141 {source="ZFA"} ! heart tube
[Term]
id: UBERON:0010228
name: ruminal fluid
xref: BTO:0004789
is_a: UBERON:0000463 ! portion of organism substance
relationship: surrounded_by UBERON:0007365
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: surrounded_by UBERON:0007365 ! rumen
relationship: surrounded_by UBERON:0007365 ! rumen
[Term]
id: UBERON:0010229
name: ruminant esophageal groove
def: "A muscular structure at the lower end of the esophagus that, when closed, forms a tube allowing milk to go directly into the abomasum. (This prevents milk from being fermented or soured by the ruminal microorganisms)." [http://www.extension.org/pages/16468/esophageal-groove]
comment: The formation of the esophageal groove is controlled by neural stimulation from suckling and milk proteins. This means milk, colostrum, and milk replacer bypass the rumen, while water enters it
synonym: "esophageal groove" BROAD SENSU []
synonym: "reticular groove" BROAD SENSU []
synonym: "ruminant reticular groove" EXACT []
xref: BTO:0004789
xref: SCTID:86149002
is_a: UBERON:0004111 ! anatomical conduit
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0006846 ! groove
relationship: channel_for UBERON:0001913 ! milk
relationship: channels_from UBERON:0001043 ! esophagus
relationship: channels_into UBERON:0007358 ! abomasum
relationship: develops_from UBERON:0007361 ! ruminant reticulum
relationship: existence_ends_during UBERON:0000113 ! post-juvenile adult stage
[Term]
id: UBERON:0010230
name: eyeball of camera-type eye
def: "The camera-type eye apart from its appendages/adnexa." [Wikipedia:Globe_(human_eye)]
comment: See notes for camera-type eye
synonym: "bulbus oculi" EXACT []
synonym: "eye" RELATED INCONSISTENT []
synonym: "eye globe" EXACT [VHOG:0001616]
synonym: "eyeball" EXACT [FMA:12513]
synonym: "globe" RELATED [HP:0100886, MIAA:0000283]
xref: FMA:12513
xref: MIAA:0000283
xref: SCTID:244486005
xref: VHOG:0001616
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye
[Term]
id: UBERON:0010231
name: anatomical line between outer ears
synonym: "otic line" RELATED []
is_a: UBERON:0006800 ! anatomical line
relationship: connects UBERON:0006616 ! right external ear
relationship: connects UBERON:0006617 ! left external ear
[Term]
id: UBERON:0010232
name: placodal ectoderm
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0000924 {source="UBERONREF:0000002"} ! ectoderm
[Term]
id: UBERON:0010233
name: stroma of thyroid gland
def: "the connective tissue that supports the lobules and follicles of the thyroid gland." [http://www.drugs.com/dict/stroma-of-thyroid-gland.html]
synonym: "thyroid gland stroma" EXACT [FMA:86304]
synonym: "thyroid stroma" EXACT []
xref: FMA:86304
xref: SCTID:157862000
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002046
intersection_of: UBERON:0003891 ! stroma
intersection_of: part_of UBERON:0002046 ! thyroid gland
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0010234
name: palatopharyngeus
def: "The palatopharyngeus or palatopharyngeal or pharyngopalatinus muscle is a long, fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the palatopharyngeal arch." [Wikipedia:Palatopharyngeus_muscle]
comment: Structure notes: It is separated from the palatoglossus muscle by an angular interval, in which the palatine tonsil is lodged. It arises from the soft palate, where it is divided into two fasciculi by the levator veli palatini and musculus uvulae
synonym: "musculus palatopharyngeus" RELATED LATIN [Wikipedia:Palatopharyngeus_muscle]
synonym: "palatopharyngeal muscle" EXACT []
synonym: "palatopharyngeus muscle" EXACT []
synonym: "pharyngopalatinus" RELATED [Wikipedia:Palatopharyngeus_muscle]
synonym: "pharyngopalatinus muscle" EXACT [Wikipedia:Palatopharyngeus_muscle]
xref: FMA:46666
xref: http://upload.wikimedia.org/wikipedia/commons/1/1b/Musculuspalatopharyngeus.png
xref: SCTID:244796000
property_value: UBPROP:0000001 "Palatopharyngeus is a muscle that attaches to the palatine bones, soft palate, and pharynx and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED]" xsd:string
is_a: UBERON:0000933 {source="FMA"} ! pharyngeal muscle
is_a: UBERON:0003682 {source="Wikipedia"} ! palatal muscle
relationship: has_muscle_insertion UBERON:0001738 {notes="Upper border of thyroid cartilage", source="dbpedia"} ! thyroid cartilage
relationship: has_muscle_nerve UBERON:0001759 {source="dbpedia", notes="vagus nerve and cranial accessory nerve"} ! vagus nerve
relationship: has_muscle_nerve UBERON:0002019 {source="dbpedia", notes="vagus nerve and cranial accessory nerve"} ! accessory XI nerve
relationship: has_muscle_origin UBERON:0003216 {source="dbpedia", notes="palatine aponeurosis and hard palate"} ! hard palate
[Term]
id: UBERON:0010235
name: uvular muscle
def: "The musculus uvulae (azygos uvulae) is a muscle of the soft palate. It arises from the posterior nasal spine of the palatine bones and from the palatine aponeurosis. It descends to be inserted into the uvula and functions to move and shape it. It is innervated by the pharyngeal branch of the vagus nerve via the pharyngeal plexus[WP]." [Wikipedia:Musculus_uvulae]
synonym: "azygos uvulae" RELATED [Wikipedia:Musculus_uvulae]
synonym: "m. uvulae" RELATED [Wikipedia:Musculus_uvulae]
synonym: "musculus uvulae" RELATED [Wikipedia:Musculus_uvulae]
synonym: "musculus uvulae muscle" RELATED [Wikipedia:Musculus_uvulae]
synonym: "uvulae muscle" RELATED [Wikipedia:Musculus_uvulae]
synonym: "uvular muscle" EXACT [FMA:46733]
xref: FMA:46733
xref: http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray169.png
xref: SCTID:244797009
property_value: UBPROP:0000001 "The muscle of the uvuli is an integral part of the soft palate and is innervated by Cranial Nerve X .[FEED]" xsd:string
is_a: UBERON:0003682 {source="Wikipedia"} ! palatal muscle
relationship: has_muscle_nerve UBERON:0000929 {source="dbpedia"} ! pharyngeal branch of vagus nerve
relationship: has_muscle_origin UBERON:0003216 {source="dbpedia"} ! hard palate
[Term]
id: UBERON:0010238
name: torus pylorus
def: "A fleshy protuberance at the pylorus of some species such as ruminants and pigs, that projects into the lumen of the pyloric canal" [http://medical-dictionary.thefreedictionary.com/torus+pyloricus]
synonym: "torus pyloricus" EXACT []
xref: SCTID:14214007
property_value: RO:0002161 NCBITaxon:314146
is_a: UBERON:0009034 {source="MA"} ! stomach region
relationship: part_of UBERON:0001166 ! pylorus
[Term]
id: UBERON:0010239
name: spiral colon
def: "A variant of the ascending colon ruminants and pigs." [Wikipedia:Spiral_colon]
synonym: "coiled colon" EXACT []
xref: ncithesaurus:Spiral_Colon
property_value: "homologous_to" UBERON:0001156
is_a: UBERON:0000168 ! segment of colon
relationship: continuous_with UBERON:0001157 ! transverse colon
relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut
[Term]
id: UBERON:0010240
name: zygomatic gland
def: "a salivary gland best developed in carnivores; located above the zygomatic arch and below the eye. Enlargement or mucocele of the gland causes exophthalmos" [http://medical-dictionary.thefreedictionary.com/zygomatic+gland]
synonym: "orbital gland" RELATED []
synonym: "superior buccal gland" RELATED []
synonym: "upper molar gland" RELATED []
xref: ncithesaurus:Zygomatic_Gland
is_a: UBERON:0001044 ! salivary gland
relationship: part_of UBERON:0001567 ! cheek
[Term]
id: UBERON:0010241
name: molar gland
comment: a variety of mammals have salivary glands variously terms upper molar/buccal gland - this class groups all of these
synonym: "molar salivary gland" EXACT [FMA:59794]
xref: FMA:59794
xref: SCTID:59637006
is_a: UBERON:0001830 ! minor salivary gland
relationship: part_of UBERON:0001567
intersection_of: UBERON:0001830 ! minor salivary gland
intersection_of: part_of UBERON:0001567 ! cheek
relationship: part_of UBERON:0001567 ! cheek
[Term]
id: UBERON:0010242
name: anterior buccal gland
xref: MA:0002700
is_a: UBERON:0010241 ! molar gland
relationship: part_of UBERON:0001567 ! cheek
[Term]
id: UBERON:0010243
name: merocrine gland
def: "One in which the secretory cells maintain their integrity throughout the secretory cycle." [BTO:0002324]
xref: BTO:0002324
is_a: UBERON:0002530 {source="BTO"} ! gland
[Term]
id: UBERON:0010244
name: choroid tapetum lucidum
def: "A tapetum lucidum that is part of the choroid" [UBERON:cjm, Wikipedia:Tapetum_lucidum#Classification]
synonym: "tapetum choroideae" EXACT [BTO:0001828]
xref: BTO:0001828
xref: SCTID:3034006
is_a: UBERON:0004868 ! tapetum lucidum
relationship: part_of UBERON:0001776
intersection_of: UBERON:0004868 ! tapetum lucidum
intersection_of: part_of UBERON:0001776 ! choroid
relationship: adjacent_to UBERON:0000966 ! retina
relationship: part_of UBERON:0001776 ! choroid
[Term]
id: UBERON:0010245
name: retinal tapetum lucidum
def: "A tapetum lucidum that is part of the retina" [UBERON:cjm, Wikipedia:Tapetum_lucidum#Classification]
comment: Taxon notes: as seen in teleosts, crocodiles, marsupials and fruit bats[WP]
is_a: UBERON:0004868 ! tapetum lucidum
relationship: part_of UBERON:0000966
intersection_of: UBERON:0004868 ! tapetum lucidum
intersection_of: part_of UBERON:0000966 ! retina
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0010246
name: choroidal guanine tapetum
def: "A choroid tapetum lucidum that is made of a palisade of cells containing stacks of flat hexagonal crystals of guanine" [UBERON:cjm, Wikipedia:Tapetum_lucidum#Classification]
comment: Taxon notes: elasmobranchii (skates, rays, and sharks) and chimaeras[WP]
is_a: UBERON:0010244 ! choroid tapetum lucidum
[Term]
id: UBERON:0010247
name: choroidal tapetum cellulosum
def: "A choroid tapetum lucidum that consists of layers of cells containing organized, highly refractive crystals. These crystals are diverse in shape and makeup" [UBERON:cjm, Wikipedia:Tapetum_lucidum#Classification]
comment: Taxon notes: carnivores, rodents and cetacea[WP]
is_a: UBERON:0010244 ! choroid tapetum lucidum
[Term]
id: UBERON:0010248
name: choroidal tapetum fibrosum
def: "A choroid tapetum lucidum that is an array of extracellular fibers." [UBERON:cjm, Wikipedia:Tapetum_lucidum#Classification]
comment: Taxon notes: cows, sheep, goats and horses[WP]
is_a: UBERON:0010244 ! choroid tapetum lucidum
[Term]
id: UBERON:0010249
name: posterior meningeal artery
def: "The posterior meningeal artery are small vessels which are branches of the ascending pharyngeal artery which supply the dura mater. It passes through the mastoid foramen before entering the cranium via the jugular foramen." [Wikipedia:Posterior_meningeal_artery]
synonym: "arteria meningea posterior" RELATED LATIN [Wikipedia:Posterior_meningeal_artery]
synonym: "meningeal branches of the ascending pharyngeal artery" RELATED [Wikipedia:Posterior_meningeal_artery]
synonym: "posterior meningeal arteries" RELATED PLURAL [Wikipedia:Posterior_meningeal_artery]
synonym: "terminal branch of ascending pharyngeal artery" EXACT [FMA:49503]
xref: FMA:49503
xref: http://upload.wikimedia.org/wikipedia/commons/8/81/Gray193.png
xref: ncithesaurus:Posterior_Meningeal_Artery
is_a: UBERON:0003474 ! meningeal artery
[Term]
id: UBERON:0010250
name: middle meningeal artery
def: "The middle meningeal artery is typically the third branch of the first part (retromandibular part) of the maxillary artery; one of the two terminal branches of the external carotid artery. After branching off the maxillary artery in the infratemporal fossa, it runs through the foramen spinosum to supply the dura mater and the calvaria. The middle meningeal artery is the largest of the three (paired) arteries which supply the meninges, the others being the anterior meningeal artery and the posterior meningeal artery. In approximately half of subjects it branches into an accessory meningeal artery. The middle meningeal artery runs beneath the pterion. It is vulnerable to injury at this point, where the skull is thin. Rupture of the artery may give rise to an epidural hematoma." [Wikipedia:Middle_meningeal_artery]
synonym: "arteria meningea media" RELATED LATIN [Wikipedia:Middle_meningeal_artery]
synonym: "arteria meningea media" RELATED [Wikipedia:Middle_meningeal_artery]
xref: FMA:49711
xref: http://upload.wikimedia.org/wikipedia/commons/1/1e/Middle_meningeal_artery.png
xref: SCTID:278100005
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003474 ! meningeal artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: branch_of UBERON:0001616 {source="FMA"} ! maxillary artery
[Term]
id: UBERON:0010251
name: anterior meningeal artery
def: "a meningeal branch to the dura mater arising from the anterior ethmoidal artery." [Wikipedia:Anterior_ethmoidal_artery]
comment: Editor notes: this needs checkin as part of a general revision of the blood vessels and their branches - unclear if the anterior meningeal artery should be treated separately from the anterior ethmoidal artery (ie as a branch) or the same thing
synonym: "anterior ethmoid arteries" RELATED [Wikipedia:Anterior_ethmoidal_artery]
synonym: "anterior ethmoid artery" RELATED [Wikipedia:Anterior_ethmoidal_artery]
synonym: "anterior meningeal arteries" RELATED [Wikipedia:Anterior_ethmoidal_artery]
synonym: "anterior meningeal artery" RELATED [Wikipedia:Anterior_ethmoidal_artery]
synonym: "anterior meningeal branch of anterior ethmoidal artery" EXACT [FMA:49993]
synonym: "arteria ethmoidalis anterior" RELATED LATIN [Wikipedia:Anterior_ethmoidal_artery]
xref: FMA:49993
xref: http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png
xref: ncithesaurus:Anterior_Meningeal_Artery
xref: SCTID:369327009
is_a: UBERON:0003474 ! meningeal artery
[Term]
id: UBERON:0010252
name: 1st arch mandibular mesenchyme from neural crest
xref: EHDAA2:0000037
is_a: UBERON:0009584 ! 1st arch mandibular mesenchyme
is_a: UBERON:0010259 {source="inferred"} ! 1st arch mesenchyme from neural crest
relationship: develops_from UBERON:0002342
relationship: part_of UBERON:0009584
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0002342 ! neural crest
intersection_of: part_of UBERON:0009584 ! 1st arch mandibular mesenchyme
relationship: develops_from UBERON:0002342 ! neural crest
relationship: develops_from UBERON:0007098 ! mandibular neural crest
relationship: part_of UBERON:0009584 {source="EHDAA2"} ! 1st arch mandibular mesenchyme
relationship: part_of UBERON:0009584 ! 1st arch mandibular mesenchyme
relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest
[Term]
id: UBERON:0010253
name: 1st arch maxillary mesenchyme from neural crest
xref: EHDAA2:0000044
is_a: UBERON:0010045 ! 1st arch maxillary mesenchyme
is_a: UBERON:0010259 ! 1st arch mesenchyme from neural crest
relationship: develops_from UBERON:0002342
relationship: part_of UBERON:0010045
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0002342 ! neural crest
intersection_of: part_of UBERON:0010045 ! 1st arch maxillary mesenchyme
relationship: develops_from UBERON:0002342 ! neural crest
relationship: part_of UBERON:0010045 {source="EHDAA2"} ! 1st arch maxillary mesenchyme
relationship: part_of UBERON:0010045 ! 1st arch maxillary mesenchyme
relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest
[Term]
id: UBERON:0010254
name: 2nd arch mesenchyme from neural crest
xref: EHDAA2:0000068
xref: EMAPA:16281
is_a: UBERON:0005689 ! 2nd arch mesenchyme
is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest
is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest
relationship: develops_from UBERON:0002342
relationship: part_of UBERON:0005689
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0002342 ! neural crest
intersection_of: part_of UBERON:0005689 ! 2nd arch mesenchyme
relationship: develops_from UBERON:0002342 ! neural crest
relationship: develops_from UBERON:0007099 ! hyoid neural crest
relationship: part_of UBERON:0005689 ! 2nd arch mesenchyme
relationship: part_of UBERON:0005689 {source="EHDAA2"} ! 2nd arch mesenchyme
relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest
[Term]
id: UBERON:0010255
name: 3rd arch mesenchyme from neural crest
synonym: "mesenchyme derived from neural crest of mesenchyme of 3rd arch" EXACT [EMAPA:16404]
xref: EHDAA2:0000083
xref: EMAPA:16404
xref: VHOG:0000571
is_a: UBERON:0005690 ! 3rd arch mesenchyme
is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest
is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest
relationship: develops_from UBERON:0002342
relationship: part_of UBERON:0005690
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0002342 ! neural crest
intersection_of: part_of UBERON:0005690 ! 3rd arch mesenchyme
relationship: develops_from UBERON:0002342 ! neural crest
relationship: develops_from UBERON:0003852 {source="EHDAA2-inferred"} ! rhombencephalon neural crest
relationship: part_of UBERON:0005690 ! 3rd arch mesenchyme
relationship: part_of UBERON:0005690 {source="EHDAA2"} ! 3rd arch mesenchyme
relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest
[Term]
id: UBERON:0010256
name: 4th arch mesenchyme from neural crest
synonym: "mesenchyme derived from neural crest of mesenchyme of 4th arch" EXACT [EMAPA:16772]
xref: EHDAA2:0000098
xref: EMAPA:16772
xref: VHOG:0000580
is_a: UBERON:0005691 ! 4th arch mesenchyme
is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest
is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest
relationship: develops_from UBERON:0002342
relationship: part_of UBERON:0005691
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0002342 ! neural crest
intersection_of: part_of UBERON:0005691 ! 4th arch mesenchyme
relationship: develops_from UBERON:0002342 ! neural crest
relationship: develops_from UBERON:0003852 {source="EHDAA2-inferred"} ! rhombencephalon neural crest
relationship: part_of UBERON:0005691 ! 4th arch mesenchyme
relationship: part_of UBERON:0005691 {source="EHDAA2"} ! 4th arch mesenchyme
relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest
[Term]
id: UBERON:0010257
name: 6th arch mesenchyme from neural crest
xref: EHDAA2:0004077
is_a: UBERON:0010031 ! 6th arch mesenchyme
is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest
is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest
relationship: develops_from UBERON:0002342
relationship: part_of UBERON:0010031
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0002342 ! neural crest
intersection_of: part_of UBERON:0010031 ! 6th arch mesenchyme
relationship: develops_from UBERON:0002342 ! neural crest
relationship: develops_from UBERON:0003852 {source="EHDAA2-inferred"} ! rhombencephalon neural crest
relationship: part_of UBERON:0010031 {source="EHDAA2"} ! 6th arch mesenchyme
relationship: part_of UBERON:0010031 ! 6th arch mesenchyme
relationship: part_of UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest
[Term]
id: UBERON:0010258
name: mesenchyme from rhombencephalic neural crest
xref: EHDAA2:0004423
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: develops_from UBERON:0003852
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0003852 ! rhombencephalon neural crest
relationship: develops_from UBERON:0003852 ! rhombencephalon neural crest
relationship: part_of UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest
[Term]
id: UBERON:0010259
name: 1st arch mesenchyme from neural crest
synonym: "mesenchyme derived from neural crest of mesenchyme of 1st arch" EXACT [EMAPA:16129]
xref: EMAPA:16129
is_a: UBERON:0010042 ! 1st arch mesenchyme
is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest
is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest
relationship: develops_from UBERON:0002342
relationship: part_of UBERON:0010042
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0002342 ! neural crest
intersection_of: part_of UBERON:0010042 ! 1st arch mesenchyme
relationship: develops_from UBERON:0002342 ! neural crest
relationship: develops_from UBERON:0003852 {source="EHDAA2-inferred"} ! rhombencephalon neural crest
relationship: part_of UBERON:0010042 ! 1st arch mesenchyme
[Term]
id: UBERON:0010260
name: umbilical blood vessel
synonym: "umbilical cord blood vessel" EXACT []
is_a: UBERON:0001981 ! blood vessel
relationship: overlaps UBERON:0002331
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: overlaps UBERON:0002331 ! umbilical cord
relationship: overlaps UBERON:0002331 ! umbilical cord
[Term]
id: UBERON:0010262
name: operculum of brain
def: "The most posterior portion of the inferior frontal gyrus of the frontal lobe in the brain. In an axial plane, the Sylvian fissure extends from the operculum posteriorly to divide the frontal from the temporal lobe. Broca's area is a notable part of the operculum, which plays a key role in conversation or speech production, reading and writing. Its vascular supply comes from the M3 branches of the middle cerebral artery. Post-mortem, the parietal operculum of Albert Einstein's brain was found to be malformed." [Wikipedia:Operculum_%28brain%29]
synonym: "operculum" BROAD [HP:0100954]
synonym: "operculum frontale, operculum parietale, operculum temporale" RELATED LATIN [Wikipedia:Operculum_%28brain%29]
xref: http://upload.wikimedia.org/wikipedia/commons/b/b3/Operculum.png
xref: SCTID:362351003
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001869 {source="HP"} ! cerebral hemisphere
[Term]
id: UBERON:0010263
name: embryoid body
def: "Embryoid bodies are structures resembling embryos, occurring in several types of germ cell tumors." [BTO:0001718, Wikipedia:Embryoid_body]
comment: Obsoled, as does not cover naturally occurring entity
is_obsolete: true
[Term]
id: UBERON:0010264
name: hepatopancreas
def: "an organ of the digestive tract of arthropods and molluscs. It provides the functions which in mammals are provided separately by the liver and pancreas, including the production of digestive enzymes, and absorption of digested food." [Wikipedia:Hepatopancreas]
xref: BTO:0000597
property_value: "present_in_taxon" NCBITaxon:6657
is_a: UBERON:0003408 ! gland of gut
is_a: UBERON:0006925 {source="BTO"} ! digestive gland
relationship: part_of UBERON:0001045 {source="BTO"} ! midgut
[Term]
id: UBERON:0010265
name: mollusc hepatopancreas
def: "." [Wikipedia:Digestive_system_of_gastropods#Hepatopancreas]
is_a: UBERON:0010264 ! hepatopancreas
[Term]
id: UBERON:0010266
name: arthropod hepatopancreas
def: "Digestive gland of crustaceans with functions approximately analogous to liver and pancreas of vertebrates - enzyme secretion, food absorption and storage." [BTO:0000597]
synonym: "crustacean digestive gland" RELATED []
synonym: "midgut gland" RELATED [BTO:0000597]
is_a: UBERON:0005057 ! immune organ
is_a: UBERON:0010264 ! hepatopancreas
relationship: part_of UBERON:0002405 {source="PMID:18025161"} ! immune system
[Term]
id: UBERON:0010267
name: inferior reticular formation
def: "." [GO:0021728]
is_obsolete: true
[Term]
id: UBERON:0010268
name: superior reticular formation
def: "." [GO:0021729]
is_obsolete: true
[Term]
id: UBERON:0010269
name: filum terminale internum
synonym: "internal part of filum terminale" EXACT [FMA:256524]
xref: FMA:256524
xref: SCTID:315673007
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale
[Term]
id: UBERON:0010270
name: filum terminale externum
synonym: "external part of filum terminale" EXACT [FMA:256526]
xref: FMA:256526
xref: SCTID:315573001
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale
[Term]
id: UBERON:0010271
name: musculus retractor bulbi
def: "Cranial nerve VI innervated; ventral and posterior to the eye." [AAO:0010122]
comment: Editors note: TODO - add innervation relationships // In most other mammals it also innervates the musculus retractor bulbi, which can retract the eye for protection[wiki/Abducens_nerve]
synonym: "M. retractor bulbi" EXACT []
synonym: "retractor bulbi" EXACT []
synonym: "retractor bulbi muscle" EXACT []
xref: AAO:0010122
property_value: RO:0002161 NCBITaxon:9606
is_a: UBERON:0001601 {source="cjm"} ! extra-ocular muscle
[Term]
id: UBERON:0010272
name: hyoid apparatus
def: "A group of bones comprised of hyoid body and two pairs of cornua (i.e. greater cornua and lesser cornua), and lies just below the tongue, above the thyroid cartilage" [http://www.biology-online.org/dictionary/Hyoid_apparatus]
comment: Taxon notes: In most mammals, including humans, the hyoid apparatus is shaped like a horseshoe. However, in humans, some of the bones of the hyoid apparatus are fused into a single bone called os hyoideum. In other animals such as frogs, the hyoid apparatus has a hyoid body that is chiefly comprised of hyaline cartilage and two pairs of processes (i.e. alary process and the posteriolateral process).
synonym: "apparatus hyoideus" RELATED [http://www.biology-online.org/dictionary/Hyoid_apparatus]
synonym: "hyobranchial apparatus" RELATED [AAO:0000225]
synonym: "hyolingual system" RELATED [AAO:0000225]
xref: AAO:0000225
xref: AAO:0000682
xref: http://palaeos.com/vertebrates/bones/gill_arches/images/ReptileHyoids.gif
xref: SCTID:410035009
property_value: UBPROP:0000001 "Apparatus located in the floor of the mouth, under the mandibular arcade. The apparatus consists of a central corpus and four pairs of processes. This apparatus serves as the site of insertion for a variety of muscles associated with movements of the tongue and as the origin of the m. hyoglossus.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of hyolaryngeal complex (AAO:0000226)[AAO]" xsd:string
is_a: UBERON:0000075 ! subdivision of skeletal system
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton
[Term]
id: UBERON:0010273
name: zone of hyoid bone
synonym: "hyoid bone zone" EXACT [FMA:59494]
xref: FMA:59494
xref: SCTID:119534005
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001685
intersection_of: UBERON:0005913 ! zone of bone organ
intersection_of: part_of UBERON:0001685 ! hyoid bone
relationship: part_of UBERON:0001685 ! hyoid bone
[Term]
id: UBERON:0010276
name: vertebral column opening
comment: AO notes: in AAO this is a space rather than conduit
synonym: "vertebral conduit" EXACT []
xref: AAO:0000700
is_a: UBERON:0004111 ! anatomical conduit
relationship: part_of UBERON:0002412
intersection_of: UBERON:0004111 ! anatomical conduit
intersection_of: part_of UBERON:0002412 ! vertebra
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0010277
name: mesocardium
def: "The part of the embryonic mesentery which connects the embryonic heart with the body wall in front and the foregut behind." [http://medical-dictionary.thefreedictionary.com/mesocardium]
xref: MA:0000098
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: develops_from UBERON:0004873 {source="EHDAA2"} ! splanchnopleure
relationship: part_of UBERON:0000948 {source="MA"} ! heart
relationship: part_of UBERON:0003282 ! mesentery of heart
relationship: surrounded_by UBERON:0001074 ! pericardial cavity
[Term]
id: UBERON:0010279
name: pericardial sinus
def: "There are two Pericardial sinuses: transverse and oblique. The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium and is known as the oblique sinus. . The passage between the venous and arterial mesocardiabi.e. , between the aorta and pulmonary artery in front and the superior vena cava behindbis termed the transverse sinus. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside. Can be used to pass ligature during cardiac surgery." [Wikipedia:Pericardial_sinus]
synonym: "oblique pericardial" RELATED [Wikipedia:Pericardial_sinus]
synonym: "oblique pericardial sinus" RELATED [Wikipedia:Pericardial_sinus]
synonym: "oblique sinus" RELATED [Wikipedia:Pericardial_sinus]
synonym: "pericardial sinuses" RELATED [Wikipedia:Pericardial_sinus]
synonym: "transverse pericardial" RELATED [Wikipedia:Pericardial_sinus]
synonym: "transverse pericardial sinus" RELATED [Wikipedia:Pericardial_sinus]
xref: http://upload.wikimedia.org/wikipedia/commons/7/7e/Gray489.png
xref: SCTID:314273005
is_a: UBERON:0002553 ! anatomical cavity
relationship: surrounded_by UBERON:0010277 {source="MA"} ! mesocardium
[Term]
id: UBERON:0010283
name: oblique pericardial sinus
def: "The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium.[WP,unvetted]." [Wikipedia:Pericardial_sinus]
synonym: "oblique sinus of pericardial cavity" EXACT [FMA:77133]
xref: FMA:77133
is_a: UBERON:0010279 ! pericardial sinus
[Term]
id: UBERON:0010284
name: lacrimal punctum
def: "A minute orifice on the summit of the papillae lacrimales, which is the commencement point of the lacrimal canaliculi." [Wikipedia:Lacrimal_punctum]
xref: FMA:59365
xref: http://upload.wikimedia.org/wikipedia/commons/5/53/Gray895.png
xref: SCTID:263344003
is_a: UBERON:0000161 {source="FMA"} ! orifice
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001750 {source="cjm"} ! lacrimal apparatus
[Term]
id: UBERON:0010285
name: midbrain basal plate
def: "Portion of tissue that is dorsolateral to the floor plate and part of the midbrain." [ZFA:0000761]
xref: EHDAA2:0004375
xref: TAO:0000761
xref: ZFA:0000761
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003528 ! brain grey matter
relationship: part_of UBERON:0009581 {source="EHDAA2"} ! midbrain mantle layer
relationship: part_of UBERON:0010286 {source="ZFA"} ! midbrain neural tube
[Term]
id: UBERON:0010286
name: midbrain neural tube
def: "Portion of neural tube that gives rise to the midbrain." [ZFA:0007039]
xref: TAO:0007039
xref: ZFA:0007039
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: part_of UBERON:0003080 {source="ZFA"} ! anterior neural tube
[Term]
id: UBERON:0010287
name: motor root of facial nerve
synonym: "facial nerve motor root" EXACT [FMA:53419]
synonym: "seventh cranial nerve motor root" EXACT [FMA:53419]
xref: FMA:53419
xref: SCTID:280191009
is_a: UBERON:0004674 {source="FMA"} ! facial nerve root
relationship: develops_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon
[Term]
id: UBERON:0010288
name: future medulla oblongata
xref: EHDAA2:0001088
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_into UBERON:0001896
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: develops_into UBERON:0001896 ! medulla oblongata
relationship: develops_into UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0010289
name: scleral cartilage
def: "Circular cartilage ringing the posterior portion of the eye in the sclera. Supports the eye." [http://www.fishbase.org/glossary/Glossary.php?q=scleral+cartilage]
comment: Taxon notes: May be calcified in chondrichthyans. Tetrapods without this element (e.g., snakes and mammals) have a collagenous sclera. May not be homologous - see PMID:17051547. cup-shaped in birds. Present in monotremes. Editor notes: consider distinguishing cup from predecessor of ossicle. Hall: The scleral cartilaginous cup is a distinctly sepa- rate element composed of hyaline cartilage. Editors notes: relationship to sclera - overlaps?
synonym: "scleral cartilaginous cup" NARROW SENSU [PMID:17051547]
synonym: "scleral cartilaginous element" EXACT [PMID:17051547]
synonym: "sclerotic cartilage" EXACT [ZFA:0001509]
xref: TAO:0001509
xref: ZFA:0001509
property_value: RO:0002161 NCBITaxon:32525
property_value: UBPROP:0000001 "Bilaterally paired thin continuous band of cartilage that sagitally encircles the eye.[TAO]" xsd:string
is_a: UBERON:0003932 {source="ZFA"} ! cartilaginous element of chondrocranium
is_a: UBERON:0010296 ! scleral skeletal element
relationship: develops_from UBERON:0002342 {source="PMID:17051547 - ossicles"} ! neural crest
relationship: induced_by UBERON:0001782 {gci_relation="part_of", notes="Gallus gallus", source="PMID:17051547", gci_filler="NCBITaxon:9031"} ! pigmented layer of retina
relationship: part_of UBERON:0001773 {source="cjm"} ! sclera
[Term]
id: UBERON:0010290
name: scleral ossicle
def: "A bony plate around the eyes, are situated at the corneal-scleral limbus. They do not articulate with other elements of the skull. Typically, the scleral ossicles overlap the rim of a cup of scleral cartilage that supports the eyeball. Situated near the equator of the eye and may slightly overlap the rim of scleral cartilage." [PMID:17051547]
comment: Taxon notes: The distribution of scleral ossicles and scleral cartilage among verte- brate taxa is not the same. Some taxa (e.g., birds) have both elements; some only have one element (e.g., crocodiles only have a scleral cartilage); while others (e.g., snakes) have neither element (Walls, 1942) number of ossicles making up the sclerotic ring as well as the shape of both the individual plates and the sclerotic ring is variable among tetrapod taxa.... It is therefore extremely likely that scleral skeletal elements (ossicles and cartilage) of all rep- tiles (including birds) are homologous (but cannot be assumed for reptiles and teleosts). Function notes: The function of these elements is to support the eye from within the sclera; scleral ossicles play an additional important role during accommodation in terrestrial vertebrates (Lemmrich, 1931; Walls, 1942; King and McLelland, 1984).
synonym: "scleral ossicle" EXACT [PMID:17051547]
synonym: "sclerotic bone" EXACT [ZFA:0001411]
synonym: "sclerotic ossicle" EXACT []
xref: SCTID:45632000
property_value: RO:0002161 NCBITaxon:7777
property_value: RO:0002161 NCBITaxon:7878
is_a: UBERON:0010296 ! scleral skeletal element
relationship: part_of UBERON:0001697 {source="ZFA"} ! orbital region
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0010291
name: layer of sclera
def: "." [Wikipedia:Sclera#Histology]
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001773 {source="cjm"} ! sclera
[Term]
id: UBERON:0010292
name: episcleral layer of eyeball
def: "The episclera is the outermost layer of the sclera. It is composed of loose, fibrous, elastic tissue and attaches to Tenon's capsule. A vascular plexus is found between the conjunctiva and the sclera consisting of two layers of vessels, the superficial episcleral vessels and the deep episcleral vessels." [Wikipedia:Episcleral_layer]
synonym: "episclera" EXACT [FMA:58362]
synonym: "episcleral layer" EXACT [FMA:58362]
synonym: "lamina episcleralis" EXACT LATIN [Wikipedia:Episcleral_layer]
xref: FMA:58362
xref: ncithesaurus:Episclera
xref: SCTID:368850003
is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera
[Term]
id: UBERON:0010293
name: suprachoroid lamina
def: "On the external surface of the sclera is a thin membrane, the suprachoroid lamina, composed of delicate non-vascular lamellaebeach lamella consisting of a net-work of fine elastic fibers among which are branched pigment cells. The spaces between the lamellC& are lined by endothelium, and open freely into the perichoroidal lymph space, which, in its turn, communicates with the periscleral space by the perforations in the sclera through which the vessels and nerves are transmitted." [Wikipedia:Suprachoroid_lamina]
synonym: "fusca sclerae" RELATED [Wikipedia:Suprachoroid_lamina]
synonym: "lamina fusca of sclera" EXACT [FMA:58368]
synonym: "lamina fusca sclerae" EXACT [FMA:TA]
synonym: "lamina fusca sclerae" RELATED [Wikipedia:Suprachoroid_lamina]
synonym: "lamina fusca scletae" RELATED [Wikipedia:Suprachoroid_lamina]
synonym: "lamina suprachorioidea" RELATED LATIN [Wikipedia:Suprachoroid_lamina]
synonym: "lamina suprachorioidea" RELATED [Wikipedia:Suprachoroid_lamina]
synonym: "lamina suprachoroidea" RELATED [Wikipedia:Suprachoroid_lamina]
synonym: "suprachoroid lamina of sclera" EXACT [FMA:58368]
xref: FMA:58368
xref: SCTID:280607003
is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera
[Term]
id: UBERON:0010294
name: scleral endothelium
is_a: UBERON:0001986 ! endothelium
is_a: UBERON:0007625 ! pigment epithelium of eye
is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0001773
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001773 ! sclera
relationship: part_of UBERON:0001773 ! sclera
[Term]
id: UBERON:0010295
name: substantia propria of sclera
synonym: "scleral stroma" EXACT [FMA:58365]
synonym: "stroma of sclera" EXACT [FMA:58365]
synonym: "subsantia propria" BROAD []
synonym: "subsantia propria sclerae" EXACT [FMA:58365]
xref: FMA:58365
xref: ncithesaurus:Substantia_Propria
xref: SCTID:368851004
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0010291 {source="Wikipedia"} ! layer of sclera
relationship: part_of UBERON:0001773
intersection_of: UBERON:0003891 ! stroma
intersection_of: part_of UBERON:0001773 ! sclera
relationship: part_of UBERON:0001773 ! sclera
[Term]
id: UBERON:0010296
name: scleral skeletal element
comment: An eye adnexal structure, but not necessarily part of the eyeball
property_value: RO:0002161 NCBITaxon:40674
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0010321 ! skeletal element of eye region
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0010297
name: endochondral scleral ossicle
comment: Taxon notes: The scleral ossicles [of teleosts] are reported to form indirectly by endochondral (Hall and Miyake, 1992) or by perichondral ossification (Patterson, 1977) from a cartilage element that is also present in the sclera. This is unlike the scleral ossicles of reptiles, which develop directly from ectomesenchyme (i.e., intramembranous ossification) and independently from the scleral cartilage[PMID:17051547]
xref: TAO:0001411
xref: ZFA:0001411
property_value: RO:0002161 NCBITaxon:32523
property_value: UBPROP:0000001 "A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball.[TAO]" xsd:string
is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0010290 ! scleral ossicle
relationship: develops_from UBERON:0010289 {source="ZFA"} ! scleral cartilage
relationship: part_of UBERON:0002241 {source="ZFA"} ! chondrocranium
[Term]
id: UBERON:0010298
name: intramembranous scleral ossicle
comment: Development notes: The scleral ossicles [in reptiles] are of dermal (neural crest) origin, develop intramembranously within the scleral mesenchyme, and are induced to form by overlying (transient) epithelial scleral papillae (Nelson, 1942; Murray, 1943; Fyfe and Hall, 1981, 1983; Hall, 1981, 2005; Pinto and Hall, 1991)
property_value: RO:0002161 NCBITaxon:32443
is_a: UBERON:0002514 {source="PMID:11237469"} ! intramembranous bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0010290 ! scleral ossicle
relationship: develops_in UBERON:0010299 ! scleral mesenchyme
relationship: induced_by UBERON:0010300 {source="PMID:16496288"} ! epithelial scleral papilla layer
[Term]
id: UBERON:0010299
name: scleral mesenchyme
def: "Mesenchyme surrounding the developing optic cup which develops into the sclera." [PMID:16496288, UBERON:cjm]
comment: Development notes: The mesenchyme surrounding the developing optic cup differentiates into the sclera, the dense fibrous coat of the eye.. PMID:16496288
is_a: UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0010300
name: epithelial scleral papilla layer
comment: Development notes: The scleral ossicles are of dermal (neural crest) origin, develop intramembranously within the scleral mesenchyme, and are induced to form by overlying (transient) epithelial scleral papillae (Nelson, 1942; Murray, 1943; Fyfe and Hall, 1981, 1983; Hall, 1981, 2005; Pinto and Hall, 1991). Taxon notes: Scleral papillae (which induce scleral ossicles in birds) have not been reported in teleosts, but evidence for their presence may not have been sought
synonym: "scleral papillae" EXACT []
is_a: UBERON:0000483 ! epithelium
relationship: develops_in UBERON:0010299 ! scleral mesenchyme
[Term]
id: UBERON:0010302
name: amnioserosa
def: "a single extraembryonic epithelium, which closes the germband dorsally." [doi:10.1073/pnas.0709145105]
comment: Editor's notes: May be obsoleted once added to insect ontology. Coordinate with cell type in CL
synonym: "amnion-serosa" RELATED [BTO:0004800]
xref: BTO:0004800
xref: FBbt:00000095
is_a: UBERON:0010303 {source="doi:10.1073/pnas.0709145105"} ! extraembryonic epithelium
[Term]
id: UBERON:0010303
name: extraembryonic epithelium
synonym: "extra-embryonic epithelium" EXACT []
is_a: UBERON:0000483 ! epithelium
relationship: part_of UBERON:0000478
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000478 ! extraembryonic structure
relationship: part_of UBERON:0000478 ! extraembryonic structure
[Term]
id: UBERON:0010304
name: nonkeratinizing stratified squamous epithelium
def: "Stratified squamous epithelium is a stratified squamous epithelium, the cells of which synthesizes but does not accumulate keratin. Examples: epithelium of vagina, epithelium of wall of esophagus." [FMA:45569]
synonym: "epithelium stratificatum squamosum noncornificatum" EXACT [FMA:45569]
xref: FMA:45569
is_a: UBERON:0006915 {source="FMA"} ! stratified squamous epithelium
[Term]
id: UBERON:0010305
name: region of conjunctiva
def: "The conjunctiva is divided into 3 parts." [Wikipedia:Conjunctiva#Gross_anatomy]
subset: grouping_class
synonym: "conjunctiva subdivision" EXACT [FMA:59023]
xref: FMA:59023
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001811
intersection_of: UBERON:0000064 ! organ part
intersection_of: part_of UBERON:0001811 ! conjunctiva
relationship: part_of UBERON:0001811 ! conjunctiva
[Term]
id: UBERON:0010306
name: bulbar conjunctiva
comment: covers the eyeball, over the sclera. This region of the conjunctiva is tightly bound to the underlying sclera by Tenon's capsule and moves with the eyeball movements.
synonym: "ocular conjunctiva" EXACT [Wikipedia:Conjunctiva]
xref: FMA:59024
xref: ncithesaurus:Bulbar_Conjunctiva
xref: SCTID:264509009
is_a: UBERON:0010305 {source="FMA"} ! region of conjunctiva
[Term]
id: UBERON:0010307
name: conjunctival fornix
comment: Forms the junction between the bulbar and palpebral conjunctivas. It is loose and flexible, allowing the free movement of the lids and eyeball
xref: FMA:59016
is_a: UBERON:0010305 {source="FMA"} ! region of conjunctiva
[Term]
id: UBERON:0010308
name: os opticus
def: "Scleral element located at the posterior pole of the scleral cartilage surrounding the foramen through which the optic nerve fibers pass. the internal architecture of this bone reveals a cancellous marrow cavity with fatty tissue." [PMID:16496288]
comment: Taxon notes: At present, it has been documented in 219 species from 35 families, including perching birds, woodpeckers, hummingbirds, toucans, kingfishers, and falcons (Tiemeier, 1950). Morphologically, this element varies in shape from a complete encircling element in some woodpeckers (e.g., Melanerpes eryth- rocephalus) to an abbreviated arc in Gallus
synonym: "Gemminger's ossicle" EXACT [PMID:16496288]
synonym: "os nervi optici" EXACT [PMID:16496288]
is_a: UBERON:0010298 ! intramembranous scleral ossicle
[Term]
id: UBERON:0010309
name: palpebral bone
def: "An ossified element investing the upper eyelid." [PMID:16496288, Wikipedia:Palpebral_(bone)]
comment: Taxon notes: The most extreme development of the palpebral is found in the armored dino- saur Euoplocephalus tutus, where the bone forms a quarter-sphere and adducts to completely occlude the or- bit (Coombs, 1972; Vickaryous and Russell, 2003). Notwithstanding the superficially similar position, palpe- brals and tarsal plates differ both anatomically and developmentally and are not considered homologous (Gauthier et al., 1988). Editor notes PMID:16496288 says 'invests' the eyelid, is this consistent across taxa?
synonym: "palpebral" EXACT []
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0010321 ! skeletal element of eye region
relationship: part_of UBERON:0001712
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001712 ! upper eyelid
relationship: part_of UBERON:0001712 ! upper eyelid
[Term]
id: UBERON:0010310
name: nictitating membrane lamina
def: "thin cartilaginous element that stiffens the nictitating membrane." [PMID:16496288]
comment: Taxon notes: these laminae may consist of purely hyaline cartilage (cats and horses) or may be heavily invested with elastic fibers (dogs, pigs, and cows; Schlegel et al., 2001)
synonym: "cartilago intercipiens" EXACT [PMID:16496288]
is_a: UBERON:0002418 ! cartilage tissue
is_a: UBERON:0003581 ! eyelid connective tissue
relationship: part_of UBERON:0010207
intersection_of: UBERON:0002418 ! cartilage tissue
intersection_of: part_of UBERON:0010207 ! nictitating membrane
relationship: part_of UBERON:0010207 ! nictitating membrane
[Term]
id: UBERON:0010311
name: scleral sesamoid bone
def: "A sesamoid bone that lies adjacent to the tendon of one of the muscles responsible for adducting the nictitating membrane (the pyramidal nictitating muscle) " [PMID:16496288]
comment: Structure notes: During contraction, the scleral sesamoid bone acts to anchor the pyramidal nictitating muscle to the sclera and divert the tendon from pro- jecting over the cornea. It remains to be determined whether this is indeed a true sesamoid (sensu; Vickaryous and Olson, 2006), as the scleral sesa- moid is actually invested within the synovial tendon sheath and not the tendon per se
synonym: "scleral sesamoid" EXACT [PMID:16496288]
synonym: "scleral sesamoid element" EXACT []
synonym: "sesamoideum esclerae" EXACT [PMID:16496288]
is_a: UBERON:0001479 ! sesamoid bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0010290 ! scleral ossicle
[Term]
id: UBERON:0010312
name: immature eye
def: "Developing anatomical structure that develops into the eyeball and associated structures." [ZFA:0001678]
synonym: "future eye" EXACT []
xref: TAO:0002201
xref: ZFA:0001678
property_value: UBPROP:0000001 "Multi-tissue structure that consists of the structures that develop into the retina and lens.[TAO]" xsd:string
is_a: UBERON:0005423 ! developing anatomical structure
relationship: has_developmental_contribution_from UBERON:0003071
intersection_of: UBERON:0005423 ! developing anatomical structure
intersection_of: has_developmental_contribution_from UBERON:0003071 ! eye primordium
relationship: develops_from UBERON:0003071 {evidence="definitional"} ! eye primordium
relationship: has_developmental_contribution_from UBERON:0003071 ! eye primordium
[Term]
id: UBERON:0010313
name: neural crest-derived structure
def: "An anatomical structure that develops from the neural crest." [UBERON:cjm]
comment: Grouping term for query purposes
subset: grouping_class
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0002342
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0002342 ! neural crest
relationship: develops_from UBERON:0002342 ! neural crest
[Term]
id: UBERON:0010314
name: structure with developmental contribution from neural crest
def: "An anatomical structure that has some part that develops from the neural crest." [UBERON:cjm]
comment: Grouping term for query purposes
subset: grouping_class
is_a: UBERON:0000061 ! anatomical structure
relationship: has_developmental_contribution_from UBERON:0002342
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: has_developmental_contribution_from UBERON:0002342 ! neural crest
relationship: has_developmental_contribution_from UBERON:0002342 ! neural crest
[Term]
id: UBERON:0010316
name: germ layer / neural crest
is_a: UBERON:0005291 ! embryonic tissue
[Term]
id: UBERON:0010317
name: germ layer / neural crest derived structure
comment: Grouping term for query purposes
is_obsolete: true
[Term]
id: UBERON:0010321
name: skeletal element of eye region
synonym: "eye skeleton" RELATED []
synonym: "ocular skeleton" RELATED []
synonym: "skeletal element of ocular region" RELATED []
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0004088
intersection_of: UBERON:0004765 ! skeletal element
intersection_of: part_of UBERON:0004088 ! ocular region
relationship: develops_from UBERON:0002342 {source="PMID:16496288"} ! neural crest
relationship: part_of UBERON:0004088 ! ocular region
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0010323
name: cranial skeletal system
def: "Skeletal subdivision of the head including skull (cranium plus mandible), pharyngeal and/or hyoid apparatus." [VSAO:0000049]
comment: Note that the cranial skeleton includes the pharyngeal arch skeleton. It is thus more inclusive that the cranium itself, and extends beyond the head in tetrapods. The AAO class called 'skull' belongs here, as it includes the whole splanchnocranium. Editor notes: we use 'cranial skeletal system', so that we can include the skull, which has joints/sutures as parts (recall, we follow FMA in distinguishing between the skeleton and skeletal system - only the latter includes joints)
synonym: "cranial skeleton" NARROW []
synonym: "cranium" RELATED INCONSISTENT [ZFA:0000737]
synonym: "osteocranium" NARROW []
xref: AAO:0000109
xref: AAO:0000971
xref: AAO:0010185
xref: TAO:0000737
xref: VSAO:0000049
xref: XAO:0003075
xref: ZFA:0000737
property_value: UBPROP:0000001 "Bony structure that encases the central nervous system and the primary sense organs of sight, olfaction, hearing, and equilibrium.[AAO]" xsd:string
property_value: UBPROP:0000001 "Skeletal system which is part of the skull, including the splanchnocranium, chondrocranium, and dermatocranium.[TAO]" xsd:string
is_a: UBERON:0000075 ! subdivision of skeletal system
relationship: part_of UBERON:0011137 ! axial skeletal system
[Term]
id: UBERON:0010324
name: craniofacial region
xref: VSAO:0000083
is_obsolete: true
consider: UBERON:0001456
[Term]
id: UBERON:0010325
name: craniofacial skeleton
def: "Cranial skeleton derived from neural crest cells." [VSAO:0000082]
synonym: "Cranio-facial skeleton" EXACT [VSAO:curator]
xref: VSAO:0000082
is_obsolete: true
consider: UBERON:0011156
[Term]
id: UBERON:0010326
name: optic pedicel
def: "permanent cartilage structure projecting from the site of origin of the recti muscles. Supports eyeball and aids rotation." [ISBN10:071676959X, PMID:16496288]
synonym: "eye stalk" RELATED []
is_a: UBERON:0003932 ! cartilaginous element of chondrocranium
is_a: UBERON:0010321 ! skeletal element of eye region
relationship: part_of UBERON:0004088 ! ocular region
[Term]
id: UBERON:0010327
name: early digestive tract associated mesenchyme
is_obsolete: true
[Term]
id: UBERON:0010328
name: limb bud mesenchyme
is_a: UBERON:0010329 ! limb/fin bud mesenchyme
relationship: part_of UBERON:0004347
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0004347 ! limb bud
relationship: part_of UBERON:0004347 ! limb bud
[Term]
id: UBERON:0010329
name: limb/fin bud mesenchyme
is_a: UBERON:0010377 ! mesenchyme from somatopleure
relationship: part_of UBERON:0004357
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0004357 ! limb/fin bud
relationship: develops_from UBERON:0010377 {source="EHDAA2-abduced"} ! mesenchyme from somatopleure
relationship: part_of UBERON:0004357 ! limb/fin bud
[Term]
id: UBERON:0010330
name: eyelid mesenchyme
is_a: UBERON:0003314 ! eye mesenchyme
relationship: part_of UBERON:0001711
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001711 ! eyelid
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0010332
name: epithelium of handplate
synonym: "handplate epithelium" EXACT [EHDAA2:0000730]
xref: EHDAA2:0000730
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010371 ! ecto-epithelium
relationship: part_of UBERON:0006875
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0006875 ! handplate
relationship: develops_from UBERON:0003372 {source="EHDAA2"} ! pectoral appendage bud ectoderm
relationship: part_of UBERON:0006875 ! handplate
[Term]
id: UBERON:0010333
name: extraembryonic membrane mesenchyme
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0005631
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0005631 ! extraembryonic membrane
relationship: develops_from UBERON:0005728 {source="EHDAA2-abduced"} ! extraembryonic mesoderm
relationship: part_of UBERON:0005631 ! extraembryonic membrane
[Term]
id: UBERON:0010334
name: maxillary process mesenchyme from neural crest
xref: EHDAA2:0004601
is_a: UBERON:0009526 ! maxillary process mesenchyme
is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest
relationship: develops_from UBERON:0002342
relationship: part_of UBERON:0009526
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0002342 ! neural crest
intersection_of: part_of UBERON:0009526 ! maxillary process mesenchyme
relationship: develops_from UBERON:0002342 ! neural crest
relationship: develops_from UBERON:0010253 {source="EHDAA2"} ! 1st arch maxillary mesenchyme from neural crest
relationship: part_of UBERON:0009526 ! maxillary process mesenchyme
relationship: part_of UBERON:0009526 {source="EHDAA2"} ! maxillary process mesenchyme
[Term]
id: UBERON:0010335
name: maxillary process mesenchyme from head mesenchyme
xref: EHDAA2:0004602
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0009526 ! maxillary process mesenchyme
relationship: develops_from UBERON:0006904
relationship: part_of UBERON:0009526
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
intersection_of: part_of UBERON:0009526 ! maxillary process mesenchyme
relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
relationship: develops_from UBERON:0010338 {source="EHDAA2"} ! 1st arch maxillary mesenchyme from head mesenchyme
relationship: part_of UBERON:0009526 ! maxillary process mesenchyme
relationship: part_of UBERON:0009526 {source="EHDAA2"} ! maxillary process mesenchyme
[Term]
id: UBERON:0010336
name: mandibular process mesenchyme from neural crest
xref: EHDAA2:0004603
is_a: UBERON:0006905 ! mandibular process mesenchyme
is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest
relationship: develops_from UBERON:0002342
relationship: part_of UBERON:0006905
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0002342 ! neural crest
intersection_of: part_of UBERON:0006905 ! mandibular process mesenchyme
relationship: develops_from UBERON:0002342 ! neural crest
relationship: develops_from UBERON:0010252 {source="EHDAA2"} ! 1st arch mandibular mesenchyme from neural crest
relationship: part_of UBERON:0006905 {source="EHDAA2"} ! mandibular process mesenchyme
relationship: part_of UBERON:0006905 ! mandibular process mesenchyme
[Term]
id: UBERON:0010337
name: mandibular process mesenchyme from head mesenchyme
xref: EHDAA2:0004604
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0006905 ! mandibular process mesenchyme
relationship: develops_from UBERON:0006904
relationship: part_of UBERON:0006905
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
intersection_of: part_of UBERON:0006905 ! mandibular process mesenchyme
relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
relationship: develops_from UBERON:0010339 {source="EHDAA2"} ! 1st arch mandibular mesenchyme from head mesenchyme
relationship: part_of UBERON:0006905 {source="EHDAA2"} ! mandibular process mesenchyme
relationship: part_of UBERON:0006905 ! mandibular process mesenchyme
[Term]
id: UBERON:0010338
name: 1st arch maxillary mesenchyme from head mesenchyme
xref: EHDAA2:0000043
is_a: UBERON:0010045 ! 1st arch maxillary mesenchyme
is_a: UBERON:0010341 ! 1st arch mesenchyme from head mesenchyme
relationship: develops_from UBERON:0006904
relationship: part_of UBERON:0010045
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
intersection_of: part_of UBERON:0010045 ! 1st arch maxillary mesenchyme
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
relationship: part_of UBERON:0010045 ! 1st arch maxillary mesenchyme
relationship: part_of UBERON:0010045 {source="EHDAA2"} ! 1st arch maxillary mesenchyme
[Term]
id: UBERON:0010339
name: 1st arch mandibular mesenchyme from head mesenchyme
xref: EHDAA2:0000036
is_a: UBERON:0009584 ! 1st arch mandibular mesenchyme
is_a: UBERON:0010341 ! 1st arch mesenchyme from head mesenchyme
relationship: develops_from UBERON:0006904
relationship: part_of UBERON:0009584
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
intersection_of: part_of UBERON:0009584 ! 1st arch mandibular mesenchyme
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
relationship: part_of UBERON:0009584 ! 1st arch mandibular mesenchyme
relationship: part_of UBERON:0009584 {source="EHDAA2"} ! 1st arch mandibular mesenchyme
[Term]
id: UBERON:0010341
name: 1st arch mesenchyme from head mesenchyme
synonym: "mesenchyme derived from head mesoderm of mesenchyme of 1st arch" EXACT [EMAPA:16130]
xref: EMAPA:16130
is_a: UBERON:0010042 ! 1st arch mesenchyme
is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme
relationship: develops_from UBERON:0006904
relationship: part_of UBERON:0010042
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
intersection_of: part_of UBERON:0010042 ! 1st arch mesenchyme
relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
relationship: part_of UBERON:0010042 {source="EMAPA"} ! 1st arch mesenchyme
relationship: part_of UBERON:0010042 ! 1st arch mesenchyme
[Term]
id: UBERON:0010343
name: 2nd arch mesenchyme from head mesenchyme
synonym: "mesenchyme derived from head mesoderm of mesenchyme of 2nd arch" EXACT [EMAPA:16280]
xref: EHDAA2:0000067
xref: EMAPA:16280
is_a: UBERON:0005689 ! 2nd arch mesenchyme
is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme
relationship: develops_from UBERON:0006904
relationship: part_of UBERON:0005689
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
intersection_of: part_of UBERON:0005689 ! 2nd arch mesenchyme
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
relationship: part_of UBERON:0005689 ! 2nd arch mesenchyme
relationship: part_of UBERON:0005689 {source="EHDAA2"} ! 2nd arch mesenchyme
[Term]
id: UBERON:0010344
name: 3rd arch mesenchyme from head mesenchyme
synonym: "mesenchyme derived from head mesoderm of mesenchyme of 3rd arch" EXACT [EMAPA:16403]
xref: EHDAA2:0000082
xref: EMAPA:16403
is_a: UBERON:0005690 ! 3rd arch mesenchyme
is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme
relationship: develops_from UBERON:0006904
relationship: part_of UBERON:0005690
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
intersection_of: part_of UBERON:0005690 ! 3rd arch mesenchyme
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
relationship: part_of UBERON:0005690 ! 3rd arch mesenchyme
relationship: part_of UBERON:0005690 {source="EHDAA2"} ! 3rd arch mesenchyme
[Term]
id: UBERON:0010345
name: 4th arch mesenchyme from head mesenchyme
synonym: "mesenchyme derived from head mesoderm of mesenchyme of 4th arch" EXACT [EMAPA:16771]
xref: EHDAA2:0000097
xref: EMAPA:16771
is_a: UBERON:0005691 ! 4th arch mesenchyme
is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme
relationship: develops_from UBERON:0006904
relationship: part_of UBERON:0005691
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
intersection_of: part_of UBERON:0005691 ! 4th arch mesenchyme
relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: part_of UBERON:0005691 ! 4th arch mesenchyme
relationship: part_of UBERON:0005691 {source="EHDAA2"} ! 4th arch mesenchyme
[Term]
id: UBERON:0010347
name: 6th arch mesenchyme from head mesenchyme
xref: EHDAA2:0004078
is_a: UBERON:0010031 ! 6th arch mesenchyme
is_a: UBERON:0010360 ! pharyngeal arch mesenchyme from head mesenchyme
relationship: develops_from UBERON:0006904
relationship: part_of UBERON:0010031
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
intersection_of: part_of UBERON:0010031 ! 6th arch mesenchyme
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
relationship: part_of UBERON:0010031 {source="EHDAA2"} ! 6th arch mesenchyme
relationship: part_of UBERON:0010031 ! 6th arch mesenchyme
[Term]
id: UBERON:0010348
name: hyoid pre-muscle mass
synonym: "hyoid muscle plate" RELATED []
xref: EHDAA2:0000795
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0010343 {source="EHDAA2"} ! 2nd arch mesenchyme from head mesenchyme
[Term]
id: UBERON:0010349
name: otic capsule pre-cartilage condensation
synonym: "otic capsule anlage" EXACT []
xref: EHDAA2:0000833
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001846 {source="EHDAA2"} ! internal ear
relationship: part_of UBERON:0003110 ! otic region
[Term]
id: UBERON:0010351
name: otic capsule cartilage condensation
xref: EHDAA2:0001333
xref: EHDAA:4704
xref: EMAPA:17596
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: adjacent_to UBERON:0001694 {source="EHDAA2-modified"} ! petrous part of temporal bone
relationship: develops_from UBERON:0010349 {source="EHDAA2"} ! otic capsule pre-cartilage condensation
relationship: part_of UBERON:0001846 {source="EHDAA2"} ! internal ear
relationship: part_of UBERON:0003110 ! otic region
[Term]
id: UBERON:0010354
name: Reichert's cartilage pre-cartilage condensation
synonym: "future Reichert's cartilage" EXACT []
synonym: "hyoid cartilage pre-cartilage condensation" EXACT [EMAPA:17351]
xref: EMAPA:17351
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest
relationship: develops_from UBERON:0010254 {source="EHDAA2", source="doi:10.1111/j.1469-7580.2005.00441.x"} ! 2nd arch mesenchyme from neural crest
[Term]
id: UBERON:0010355
name: ossification center
def: "The first step in ossification of the cartilage is that the cartilage cells, at the point where ossification is commencing and which is termed a ossification center, enlarge and arrange themselves in rows. The matrix in which they are imbedded increases in quantity, so that the cells become further separated from each other. A deposit of calcareous material now takes place in this matrix, between the rows of cells, so that they become separated from each other by longitudinal columns of calcified matrix, presenting a granular and opaque appearance. Here and there the matrix between two cells of the same row also becomes calcified, and transverse bars of calcified substance stretch across from one calcareous column to another. Thus there are longitudinal groups of the cartilage cells enclosed in oblong cavities, the walls of which are formed of calcified matrix which cuts off all nutrition from the cells; the cells, in consequence, atrophy, leaving spaces called the primary areolC&." [Wikipedia:Ossification_center]
comment: Editors note: currently classified as a zone of a bone organ, but exists prior to bone ossifying
synonym: "center of ossification" RELATED [Wikipedia:Ossification_center]
synonym: "centrum ossificationis" EXACT [FMA:TA]
synonym: "centrum ossificationis" RELATED LATIN [Wikipedia:Ossification_center]
synonym: "ossification centre" EXACT [FMA:75436]
xref: FMA:75436
xref: http://upload.wikimedia.org/wikipedia/commons/f/fd/Gray79.png
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
[Term]
id: UBERON:0010356
name: primary ossification center
def: "A primary ossification center is the first area of a bone to start ossifying. It usually appears during prenatal development in the central part of each developing bone. In long bones the primary centers occur in the diaphysis/shaft and in irregular bones the primary centers occur usually in the body of the bone. Most bones have only one primary center (e.g. all long bones) but some irregular bones such as the os coxa (hip) and vertebrae have multiple primary centers." [Wikipedia:Ossification_center#Primary]
synonym: "centrum ossificationis primarium" EXACT LATIN [NominaAnatomica:NA]
synonym: "primarium" BROAD [FMA:TA]
synonym: "primary ossification centre" EXACT [FMA:75447]
xref: FMA:75447
xref: ncithesaurus:Primary_Ossification_Center
is_a: UBERON:0010355 {source="FMA"} ! ossification center
[Term]
id: UBERON:0010357
name: secondary ossification center
def: "A secondary ossification center is the area of ossification that appears after the primary ossification center has already appeared - most of which appear during the postnatal and adolescent years. Most bones have more than one secondary ossification center. In long bones, the secondary centres appear in the epiphyses." [Wikipedia:Ossification_center#Secondary]
synonym: "centrum ossificationis secundarium" EXACT LATIN [NominaAnatomica:NA]
synonym: "secondary ossification centre" EXACT [FMA:75448]
synonym: "secundarium" BROAD [FMA:TA]
xref: FMA:75448
is_a: UBERON:0010355 {source="FMA"} ! ossification center
[Term]
id: UBERON:0010358
name: arch of centrum of vertebra
comment: AO notes: Note that humans do not have hemal arches, so VA=NA for FMA
synonym: "arch of vertebra" NARROW [FMA:11946]
synonym: "arcus vertebrae (vertebralis)" NARROW [FMA:11946]
synonym: "vertebra arch" NARROW [MA:0001453]
synonym: "vertebral arch" NARROW [FMA:11946]
xref: FMA:11946
xref: VHOG:0001670
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0002412 {source="FMA"} ! vertebra
[Term]
id: UBERON:0010359
name: pharyngeal arch mesenchyme from neural crest
comment: Partially implements UBERONREF:0000002 NC meeting scheme
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0002342
relationship: part_of UBERON:0010046
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0002342 ! neural crest
intersection_of: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme
relationship: develops_from UBERON:0002342 ! neural crest
relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme
[Term]
id: UBERON:0010360
name: pharyngeal arch mesenchyme from head mesenchyme
comment: Partially implements UBERONREF:0000002 NC meeting scheme
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
relationship: develops_from UBERON:0006904
relationship: part_of UBERON:0010046
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
intersection_of: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme
relationship: develops_from UBERON:0006904 ! head mesenchyme from mesoderm
relationship: part_of UBERON:0010046 ! entire pharyngeal arch associated mesenchyme
[Term]
id: UBERON:0010361
name: synostosis
def: "Nonsynovial joint in which the articulating bones are connected by bone. Examples: epiphyseal junction, manubriosternal synostosis." [FMA:7499]
synonym: "bony union" EXACT [FMA:7499]
synonym: "junctura ossea" EXACT [FMA:TA]
xref: FMA:7499
xref: SCTID:1216008
xref: ZFA:0005610
is_a: UBERON:0011134 {source="FMA"} ! nonsynovial joint
[Term]
id: UBERON:0010362
name: endoskeleton
def: "Skeletal subdivision that undergoes indirect development and includes elements that develop as a replacement or substitution of other elements or tissues." [VSAO:0000037]
synonym: "replacement skeleton" EXACT [VSAO:curator]
xref: VSAO:0000037
xref: XAO:0004026
is_a: UBERON:0010912 {source="VSAO"} ! subdivision of skeleton
[Term]
id: UBERON:0010363
name: endochondral element
def: "A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [VSAO:0000139]
synonym: "endochondral replacement element" EXACT [VSAO:0000139]
xref: VSAO:0000139
xref: XAO:0004017
xref: ZFA:0005620
is_a: UBERON:0004765 {source="VSAO"} ! skeletal element
[Term]
id: UBERON:0010364
name: dermal skeleton
def: "Skeletal subdivision that undergoes direct development and includes elements that either develop in association with the basement membrane of the ectoderm or are homologous with such elements; includes dermatocranium, components of the appendicular skeleton, teeth and tooth-like elements of the oropharynx, and integumentary elements." [VSAO:0000035]
comment: This ontology covers metazoa, so we do not use exoskeleton as primary label, as in VSAO
synonym: "dermal skeletal system" RELATED [VSAO:curator]
synonym: "dermoskeleton" RELATED [VSAO:curator]
synonym: "desmoskeleton" RELATED [VSAO:curator]
synonym: "exoskeleton" BROAD [VSAO:curator]
xref: VSAO:0000035
xref: XAO:0004025
is_a: UBERON:0010912 {source="VSAO"} ! subdivision of skeleton
[Term]
id: UBERON:0010365
name: odontoid tissue
def: "Skeletal tissue that is part of the exoskeleton and derived from an odontogenic papilla." [VSAO:0000063]
synonym: "dental tissue" RELATED [VSAO:curator]
synonym: "odontogenic tissue" EXACT [VSAO:curator]
synonym: "tooth tissue" RELATED []
xref: ncithesaurus:Tooth_Tissue
xref: VSAO:0000063
xref: XAO:0004046
xref: ZFA:0005623
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004755 ! skeletal tissue
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0001763
relationship: part_of UBERON:0010364
intersection_of: UBERON:0004755 ! skeletal tissue
intersection_of: develops_from UBERON:0001763 ! odontogenic papilla
intersection_of: part_of UBERON:0010364 ! dermal skeleton
relationship: develops_from UBERON:0001763 ! odontogenic papilla
relationship: part_of UBERON:0010364 ! dermal skeleton
[Term]
id: UBERON:0010366
name: conjunctival vasculature
synonym: "conjunctival veins" EXACT [FMA:70887]
synonym: "conjunctival veins set" EXACT [FMA:70887]
synonym: "set of conjunctival veins" EXACT [FMA:70887]
synonym: "venae conjunctivales" EXACT [FMA:TA]
xref: FMA:70887
is_a: UBERON:0002203 ! vasculature of eye
relationship: part_of UBERON:0001811
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0001811 ! conjunctiva
relationship: part_of UBERON:0001811 ! conjunctiva
[Term]
id: UBERON:0010367
name: conjunctival vein
synonym: "conjunctival blood vessel" BROAD []
xref: FMA:70887
xref: SCTID:149885003
is_a: UBERON:0001653 ! facial vein
is_a: UBERON:0006763 ! epithelium of conjunctiva
relationship: part_of UBERON:0001811
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001811 ! conjunctiva
relationship: part_of UBERON:0001811 ! conjunctiva
relationship: part_of UBERON:0010366 ! conjunctival vasculature
[Term]
id: UBERON:0010368
name: pulmonary lobule
xref: FMA:75739
xref: ncithesaurus:Pulmonary_Lobule
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0009911 {source="FMA"} ! lobule
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0010369
name: secondary pulmonary lobule
xref: FMA:7414
is_a: UBERON:0010368 {source="FMA"} ! pulmonary lobule
relationship: part_of UBERON:0008946 {source="FMA"} ! lung parenchyma
[Term]
id: UBERON:0010370
name: tibial vein
def: "One of the veins of the lower leg; empty into the popliteal vein" [http://www.thefreedictionary.com/tibial+vein]
synonym: "vena tibialis" EXACT []
xref: MA:0002243
xref: ncithesaurus:Tibial_Vein
is_a: UBERON:0001638 {source="MA"} ! vein
is_a: UBERON:0003503 ! leg blood vessel
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0010371
name: ecto-epithelium
def: "Epithelium that derives from the ectoderm. Examples: epithelium of acinus of lactiferous duct, subscapular lens epithelium, epithelium of posterior surface of cornea." [FMA:69064]
synonym: "ectoderm-derived epithelium" EXACT []
xref: FMA:69064
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: develops_from UBERON:0000924
intersection_of: UBERON:0000483 ! epithelium
intersection_of: develops_from UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0010372
name: uncinate process of ethmoid
def: "In the ethmoid bone, a curved lamina, the uncinate process, projects downward and backward from this part of the labyrinth; it forms a small part of the medial wall of the maxillary sinus, and articulates with the ethmoidal process of the inferior nasal concha." [Wikipedia:Uncinate_process_of_ethmoid_bone]
synonym: "processus uncinatus" RELATED [Wikipedia:Uncinate_process_of_ethmoid_bone]
synonym: "processus uncinatus ossis ethmoidalis" RELATED LATIN [Wikipedia:Uncinate_process_of_ethmoid_bone]
synonym: "uncinate process" BROAD INCONSISTENT [SCTID:306373001]
synonym: "uncinate process of the ethmoid" EXACT [Wikipedia:Uncinate_process_of_ethmoid_bone]
synonym: "uncinate process of the ethmoid bone" EXACT [Wikipedia:Uncinate_process_of_ethmoid_bone]
xref: FMA:57455
xref: http://upload.wikimedia.org/wikipedia/commons/c/ce/Processus_uncinatus_ossis_ethmoidalis.PNG
xref: SCTID:306373001
is_a: UBERON:0004529 {source="FMA"} ! anatomical projection
disjoint_from: UBERON:0010373 ! uncinate process of pancreas
[Term]
id: UBERON:0010373
name: uncinate process of pancreas
def: "In the head of the pancreas, the angle of junction of the lower and left lateral borders forms a prolongation, termed the uncinate process. During the embryonic development of the distal foregut, the duodenum c-shape is formed while rotating the ventral pancreatic bud into the dorsal bud. The dorsal and ventral pancreatic buds fuse. The dorsal pancreatic bud becomes the body, tail, and isthmus of the pancreas and the ventral pancreatic bud forms the pancreatic head and uncinate process[WP]" [Wikipedia:Uncinate_process_of_pancreas]
synonym: "lesser pancreas" EXACT [FMA:15857]
synonym: "processus uncinatus (pancreas)" EXACT [FMA:15857]
synonym: "processus uncinatus pancreatis" RELATED LATIN [Wikipedia:Uncinate_process_of_pancreas]
synonym: "Winslow's pancreas" EXACT [FMA:15857]
xref: EMAPA:18823
xref: FMA:15857
xref: http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg
xref: ncithesaurus:Uncinate_Pancreas
xref: SCTID:245383008
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004529 {source="FMA"} ! anatomical projection
relationship: develops_from UBERON:0003924 {source="Wikipedia"} ! ventral pancreatic bud
relationship: part_of UBERON:0001069 {source="FMA"} ! head of pancreas
[Term]
id: UBERON:0010375
name: pancreas dorsal primordium
xref: EHDAA2:0001384
is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure
is_a: UBERON:0001048 {source="EHDAA2"} ! primordium
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0003921 {source="EHDAA2"} ! pancreas primordium
[Term]
id: UBERON:0010376
name: pancreas ventral primordium
xref: EHDAA2:0001387
is_a: UBERON:0001048 {source="EHDAA2"} ! primordium
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0003921 {source="EHDAA2"} ! pancreas primordium
[Term]
id: UBERON:0010377
name: mesenchyme from somatopleure
xref: EHDAA2:0001120
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
relationship: develops_from UBERON:0004874
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0004874 ! somatopleure
relationship: develops_from UBERON:0004874 ! somatopleure
relationship: part_of UBERON:0006258 {source="EHDAA2"} ! lateral plate mesenchyme
[Term]
id: UBERON:0010378
name: mesenchyme from splanchnopleure
xref: EHDAA2:0001122
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005291 ! embryonic tissue
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
relationship: develops_from UBERON:0004873
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: develops_from UBERON:0004873 ! splanchnopleure
relationship: develops_from UBERON:0004873 ! splanchnopleure
relationship: part_of UBERON:0006258 {source="EHDAA2"} ! lateral plate mesenchyme
[Term]
id: UBERON:0010379
name: superior tarsal muscle
def: "The superior tarsal muscle is a smooth muscle adjoining the levator palpebrae superioris muscle that helps to raise the upper eyelid." [Wikipedia:Superior_tarsal_muscle]
comment: Editors note: declaring this to be both smooth muscle and part of the LPS leads to a disjointness violation (smooth muscle and striated muscle)
synonym: "mueller muscle" RELATED [Wikipedia:Superior_tarsal_muscle]
synonym: "Mueller's muscle" EXACT [FMA:49058]
synonym: "Muller's muscle" RELATED [Wikipedia:Superior_tarsal_muscle]
synonym: "musculus tarsalis superior" RELATED LATIN [Wikipedia:Superior_tarsal_muscle]
synonym: "Müller's muscle" RELATED [Wikipedia:Superior_tarsal_muscle]
synonym: "the superior tarsal muscle" RELATED [Wikipedia:Superior_tarsal_muscle]
xref: FMA:49058
xref: http://upload.wikimedia.org/wikipedia/commons/6/6f/Gray894.png
xref: SCTID:244775007
is_a: UBERON:0003386 ! smooth muscle of eye
relationship: continuous_with UBERON:0001604 {source="FMA"} ! levator palpebrae superioris
relationship: has_muscle_nerve UBERON:0000013 {source="dbpedia"} ! sympathetic nervous system
relationship: has_muscle_origin UBERON:0001604 {source="dbpedia", notes="underside of levator palpebrae superioris"} ! levator palpebrae superioris
relationship: part_of UBERON:0001712 ! upper eyelid
[Term]
id: UBERON:0010380
name: enteric nerve
xref: MA:0001145
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0002005
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002005 ! enteric nervous system
relationship: part_of UBERON:0002005 ! enteric nervous system
[Term]
id: UBERON:0010384
name: lumen of laryngopharynx
synonym: "laryngopharynx lumen" EXACT [FMA:55096]
xref: FMA:55096
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001731 ! cavity of pharynx
relationship: surrounded_by UBERON:0001051 ! hypopharynx
[Term]
id: UBERON:0010386
name: peyer's patch follicle
xref: MA:0000732
is_a: UBERON:0000444 ! lymphoid follicle
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: part_of UBERON:0001211
intersection_of: UBERON:0000444 ! lymphoid follicle
intersection_of: part_of UBERON:0001211 ! Peyer's patch
relationship: part_of UBERON:0001211 ! Peyer's patch
[Term]
id: UBERON:0010387
name: Peyer's patch T cell area
def: "the Peyer's patch area normally occupied by T lymphocytes" [MP:0002392]
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010393 ! T cell domain
relationship: part_of UBERON:0001211
intersection_of: UBERON:0010393 ! T cell domain
intersection_of: part_of UBERON:0001211 ! Peyer's patch
relationship: part_of UBERON:0001211 ! Peyer's patch
[Term]
id: UBERON:0010388
name: proximal segment of rib
def: "The segment of the rib that connects to a vertebra[MP]. a small part of the rib composed of the head, neck, tuberculum and a short proximal part of the body[PMID]" [MP:0000152, PMID:15906248]
comment: The proximal rib derives from the caudal half of somite[PMID:15906248]
synonym: "costal part of rib" RELATED []
synonym: "proximal part of rib" EXACT [PMID:15906248]
synonym: "proximal rib" EXACT [MA:0001400]
synonym: "vertebral part of rib" RELATED []
xref: MA:0001400
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0005175 ! chest organ
relationship: connected_to UBERON:0002412 ! vertebra
relationship: part_of UBERON:0002228 {source="MA"} ! rib
[Term]
id: UBERON:0010389
name: pterygoid bone
def: "a bone which corresponds to the inner plate of the pterygoid process of the human skull, but which, in all vertebrates below mammals, is not connected with the posterior nares, but serves to connect the palatine bones with the point of suspension of the lower jaw" [http://www.websters-online-dictionary.org/definitions/Pterygoid+bone]
comment: AO notes: FMA dividers pterygoid process into medial and lateral plates
synonym: "inner plate of pterygoid process" RELATED [MA:0001471]
synonym: "lamina lateralis (processus pterygoideus)" EXACT [FMA:54687, MP:0004452]
synonym: "lamina lateralis processi pterygoideus ossis sphenoidalis" EXACT [FMA:TA, MP:0004452]
synonym: "lateral lamina of pterygoid process" EXACT [FMA:54687, MP:0004452]
synonym: "lateral plate of pterygoid process" EXACT [FMA:54687, MP:0004452]
synonym: "lateral plate of sphenoid" EXACT [FMA:54687, MP:0004452]
xref: FMA:54687
xref: MA:0001471
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0011164 {source="MA"} ! neurocranium bone
relationship: part_of UBERON:0003113 {source="Kardong", notes="palatal series"} ! dermatocranium
relationship: part_of UBERON:0004649 {source="MA"} ! sphenoid bone pterygoid process
[Term]
id: UBERON:0010390
name: lumen of urethra
synonym: "urethral lumen" EXACT [FMA:19709]
xref: FMA:19709
xref: SCTID:279432008
is_a: UBERON:0002558 ! organ cavity
relationship: part_of UBERON:0000057
intersection_of: UBERON:0002558 ! organ cavity
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0010391
name: parametrium
def: "In women, the supravaginal portion of the cervix is separated in front from the bladder by fibrous tissue, the parametrium, which extends also on to its sides and laterally between the layers of the broad ligaments. The uterine artery and ovarian ligament are located in the parametrium. Inflammation causes Parametritis." [Wikipedia:Parametrium]
comment: subserous coat of the uterus laterally between the layers of the broad ligament[MP] - todo - check relationships
xref: FMA:77061
xref: ncithesaurus:Parametrium
xref: SCTID:280455005
is_a: UBERON:0002095 {source="FMA"} ! mesentery
[Term]
id: UBERON:0010392
name: B cell domain
comment: todo - check
is_a: UBERON:0010394 ! lymphocyte domain
[Term]
id: UBERON:0010393
name: T cell domain
comment: todo - check
is_a: UBERON:0010394 ! lymphocyte domain
[Term]
id: UBERON:0010394
name: lymphocyte domain
comment: todo - check
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0010395
name: lymph node primary follicle
def: "An unstimulated network of follicular dendritic cells and small resting B cells in the lymph node cortex." [https://github.com/cmungall/uberon/issues/6, MP:0002345]
synonym: "primary follicle of lymph node" EXACT []
xref: MA:0000743
is_a: UBERON:0010422 ! primary nodular lymphoid tissue
is_a: UBERON:0010748 ! lymph node follicle
relationship: part_of UBERON:0000029
intersection_of: UBERON:0010422 ! primary nodular lymphoid tissue
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0010396
name: afferent lymphatic vessel
def: "Lymphatic vessel that enters the lymph node. The afferent lymph vessels enter at all parts of the periphery of the lymph node, and after branching and forming a dense plexus in the substance of the capsule, open into the lymph sinuses of the cortical part. In doing this they lose all their coats except their endothelial lining, which is continuous with a layer of similar cells lining the lymph paths" [MP:MP]
synonym: "vasa afferentia lymphoglandula" EXACT [Wikipedia:Afferent_lymphatic_vessels]
synonym: "vasa afferentia lymphoglandulae" EXACT [Wikipedia:Afferent_lymphatic_vessels]
xref: http://en.wikipedia.org/wiki/File:Illu_lymph_node_structure.png
xref: MA:0000748
is_a: UBERON:0001473 ! lymphatic vessel
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0010397
name: efferent lymphatic vessel
def: "Lymphatic vessel that exits the lymph node. The efferent lymphatic vessel commences from the lymph sinuses of the medullary portion of the lymph nodes and leave the lymph nodes either to veins or greater nodes. Efferent lymphatic vessels are also found in the thymus and spleen. This is in contrast to afferent lymphatic vessels, which are found only in lymph nodes." [MP:MP]
synonym: "efferent lymphatic vessel" RELATED [Wikipedia:Efferent_lymph_vessel]
synonym: "efferent lymphatic vessels" RELATED [Wikipedia:Efferent_lymph_vessel]
xref: MA:0000749
is_a: UBERON:0001473 ! lymphatic vessel
[Term]
id: UBERON:0010398
name: spleen marginal sinus
def: "the border region surrounding the spleen B cell follicles and the periarteriolar lymphoid sheath (PALS) that separates it from the marginal zone that mediates lymphocyte entry into the white pulp from the blood" [MP:MP]
comment: Note that there is no consensus in the literature about which compartments constitute the white pulp or the ramifications of the microvasculature. In addition, notable differences exist between humans and rodents. In this ontology, the marginal sinus (which may not exist in human) has been included as part of the white pulp. The perifollicular zone, which is present in human and not rodents, may be the functional equivalent of the marginal sinus in rodents.[MP:0002363]
synonym: "splenic marginal sinus" EXACT [MP:0002363]
xref: MA:0000754
xref: ncithesaurus:Splenic_Marginal_Sinus
is_a: UBERON:0001959 ! white pulp of spleen
[Term]
id: UBERON:0010399
name: spleen trabecular artery
def: "one of the branches of the splenic artery" [MP:0002354]
xref: MA:0000759
xref: ncithesaurus:Splenic_Trabecular_Artery
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003497 ! abdomen blood vessel
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0001265
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001265 ! trabecula of spleen
relationship: part_of UBERON:0001265 ! trabecula of spleen
[Term]
id: UBERON:0010400
name: spleen trabecular vein
def: "one of the veins that feed the splenic vein" [MP:0002228]
xref: MA:0000760
xref: ncithesaurus:Splenic_Trabecular_Vein
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003497 ! abdomen blood vessel
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0001265
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001265 ! trabecula of spleen
relationship: part_of UBERON:0001265 ! trabecula of spleen
[Term]
id: UBERON:0010401
name: spleen central arteriole
def: "A blood vessel surrounded by the periarteriolar lymphoid sheath that connects the trabecular artery to the trabecular vein" [MP:MP]
synonym: "follicular arteriole" EXACT [MP:0002361]
synonym: "splenic central arteriole" EXACT [MP:0002361]
xref: MA:0000763
xref: SCTID:282511007
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003497 ! abdomen blood vessel
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0001959 ! white pulp of spleen
[Term]
id: UBERON:0010402
name: epidermis suprabasal layer
synonym: "suprabasal layer" BROAD [MP:0001233]
xref: MA:0000808
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0010403
name: cortical marginal zone
def: "developing superficial cortical layer located just under the pia matter." [MP:MP]
comment: TODO; add other marginal zones; determine correct developmental relationships
synonym: "brain marginal zone" BROAD [MA:0000812]
synonym: "cortical marginal zone" EXACT [MP:0000792]
synonym: "MZ" EXACT [MP:0000792]
xref: MA:0000812
is_a: UBERON:0002301 ! layer of neocortex
is_a: UBERON:0005423 ! developing anatomical structure
relationship: adjacent_to UBERON:0002361 ! pia mater
[Term]
id: UBERON:0010404
name: lateral ventricle subependymal layer
xref: BTO:0003090
xref: MA:0000965
is_a: UBERON:0004922 ! postnatal subventricular zone
relationship: part_of UBERON:0002285
intersection_of: UBERON:0004922 ! postnatal subventricular zone
intersection_of: part_of UBERON:0002285 ! lateral ventricle
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0010405
name: spinal cord lateral motor column
def: "Column of motor neurons which innervate muscles in the limb; motor neurons in the lateral motor column are further organized into pools, each of which innervates a specific muscle in the limb" [MP:MP]
xref: MA:0001129
is_a: UBERON:0001948 ! regional part of spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0010406
name: cholinergic enteric nerve
def: "nerve fibers that utilize acetylcholine as a neurotransmitter to the intestinal system" [MP:0001049]
xref: MA:0001146
is_a: UBERON:0010380 ! enteric nerve
[Term]
id: UBERON:0010408
name: ocular angle artery
def: "The angular artery is the terminal part of the facial artery; it ascends to the medial angle of the eye's orbit, imbedded in the fibers of the angular head of the Quadratus labii superioris, and accompanied by the angular vein." [MP:MP]
synonym: "angular artery" EXACT [FMA:49583]
xref: FMA:49583
xref: MA:0002010
xref: ncithesaurus:Angular_Artery
xref: SCTID:145238006
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003496 ! head blood vessel
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010371 ! ecto-epithelium
relationship: branch_of UBERON:0001612 ! facial artery
[Term]
id: UBERON:0010409
name: eye surface
xref: MA:0002486
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0010410
name: inguinal fat pad
def: "encapsulated adipose tissue found in the groin" [UBERON:0010388]
xref: MA:0002548
is_a: UBERON:0003838 ! abdominal segment connective tissue
is_a: UBERON:0003916 ! fat pad
relationship: part_of UBERON:0008337
intersection_of: UBERON:0003916 ! fat pad
intersection_of: part_of UBERON:0008337 ! inguinal part of abdomen
relationship: part_of UBERON:0008337 ! inguinal part of abdomen
[Term]
id: UBERON:0010411
name: retroperitoneal fat pad
def: "encapsulated adipose tissue found on the dorsal side of the peritoneum" [MP:MP]
xref: MA:0002549
is_a: UBERON:0003427 ! abdominal fat pad
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002358
intersection_of: UBERON:0003916 ! fat pad
intersection_of: part_of UBERON:0002358 ! peritoneum
relationship: part_of UBERON:0002358 ! peritoneum
relationship: surrounded_by UBERON:0003693 ! retroperitoneal space
[Term]
id: UBERON:0010412
name: epididymal fat pad
def: "encapsulated adipose tissue associated with the epididymis" [MP:MP]
synonym: "periepididymal fat pad" EXACT [MP:0009288]
xref: MA:0002550
is_a: UBERON:0003916 ! fat pad
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0001301
intersection_of: UBERON:0003916 ! fat pad
intersection_of: part_of UBERON:0001301 ! epididymis
relationship: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0010413
name: parametrial fat pad
def: "encapsulated adipose tissue associated with the extension of the subserous coat of the uterus laterally between the layers of the broad ligament" [MP:MP]
synonym: "parametrial fat depot" EXACT [MP:0009301]
xref: MA:0002953
is_a: UBERON:0003916 ! fat pad
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0010391
intersection_of: UBERON:0003916 ! fat pad
intersection_of: part_of UBERON:0010391 ! parametrium
relationship: part_of UBERON:0010391 ! parametrium
[Term]
id: UBERON:0010414
name: omental fat pad
def: "encapsulated adipose tissue associated with the fold of peritoneal tissue that extends from the stomach to the posterior abdominal wall after associating with the transverse colon" [MP:MP]
synonym: "omental fat depot" EXACT [MP:0010044]
xref: MA:0002956
is_a: UBERON:0010411 ! retroperitoneal fat pad
relationship: part_of UBERON:0003688
intersection_of: UBERON:0003427 ! abdominal fat pad
intersection_of: part_of UBERON:0003688 ! omentum
relationship: part_of UBERON:0003688 ! omentum
[Term]
id: UBERON:0010415
name: barrel cortex
def: "dark-staining regions of layer four of the somatosensory cortex where somatosensory inputs from the contralateral side of the body come in from the thalamus. Barrels are found in some species of rodents and species of at least two other orders." [MP:MP]
comment: The term barrel field of the primary somatosensory area refers to one of 6 subdivisions of the primary somesthetic area of the cerebral cortex in the mouse ( Dong-2004 ) and the rat ( Swanson-2004 ). The other five are the lower limb of the primary somatosensory area, the mouth of the primary somatosensory area, the nose of the primary somatosensory area, the trunk of the primary somatosensory area and the upper limb of the primary somatosensory area. -- http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2703
synonym: "primary somatosensory area, barrel field" RELATED [ABA:SSp-bfd]
xref: ABA:SSp-bfd
xref: MA:0002712
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0008933 ! primary somatosensory cortex
[Term]
id: UBERON:0010416
name: lymph node B cell domain
def: "A part of the lymph node cortex in which B lymphocytes home to primary follicles to survey follicular dendritic cells (FDCs); antigen stimulated B cells proliferate and differentiate within the follicles forming distinctive germinal centers" [MP:MP]
synonym: "lymph node B cell dependent cortex" EXACT [MP:0002344]
synonym: "lymph node B-cell domain" EXACT [MP:0002344]
synonym: "nodular lymph node cortex" EXACT [MP:0002344]
xref: MA:0002851
is_a: UBERON:0010392 ! B cell domain
relationship: part_of UBERON:0000029
intersection_of: UBERON:0010392 ! B cell domain
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0002006 {source="MP"} ! cortex of lymph node
[Term]
id: UBERON:0010417
name: lymph node T cell domain
def: "The paracortex and interfollicular cortex of the lymph node in which T lymphocytes home to survey dendritic cells" [MP:0002347]
synonym: "lymph node deep cortex" EXACT [MP:0002347]
synonym: "lymph node T cell dependent paracortex" EXACT [MP:0002347]
synonym: "lymph node T zone" EXACT []
synonym: "lymph node T-cell domain" EXACT [MP:0002347]
synonym: "T cell zone of lymph node" EXACT []
synonym: "T zone of lymph node" EXACT []
xref: MA:0002852
xref: SCTID:326870003
is_a: UBERON:0010393 ! T cell domain
relationship: part_of UBERON:0000029
intersection_of: UBERON:0010393 ! T cell domain
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0002006 {source="MP"} ! cortex of lymph node
[Term]
id: UBERON:0010418
name: urethral opening
xref: MA:0002867
is_a: UBERON:0000161 ! orifice
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001556
intersection_of: UBERON:0000161 ! orifice
intersection_of: part_of UBERON:0001556 ! lower urinary tract
relationship: part_of UBERON:0001556 ! lower urinary tract
[Term]
id: UBERON:0010419
name: vibrissa follicle
synonym: "follicle of vibrissa" EXACT [EMAPA:26720]
xref: EMAPA:26720
xref: MA:0002910
is_a: UBERON:0002073 ! hair follicle
relationship: part_of UBERON:0006378
intersection_of: UBERON:0002073 ! hair follicle
intersection_of: part_of UBERON:0006378 ! vibrissa
relationship: part_of UBERON:0006378 ! vibrissa
[Term]
id: UBERON:0010420
name: lymph node follicular corona
def: "A part of the secondary follicle in which naive B cells reside along with some helper T cells, macrophages and follicular dendritic cells; these are displaced by the expanding germinal centre and form a 'mantle' around it" [https://github.com/cmungall/uberon/issues/7, MP:MP]
synonym: "lymph node B cell corona" EXACT [CL:tm]
synonym: "lymph node dark zone" EXACT [CL:tm]
synonym: "lymph node follicular mantle" EXACT [MA:0002990]
synonym: "lymph node inactive zone" EXACT [CL:tm]
synonym: "lymph node peripheral zone" EXACT [CL:tm]
xref: MA:0002990
is_a: UBERON:0010755 ! secondary follicle corona
relationship: part_of UBERON:0000029
intersection_of: UBERON:0010755 ! secondary follicle corona
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0010753 {source="MA"} ! lymph node secondary follicle
relationship: surrounds UBERON:0009039 ! lymph node germinal center
[Term]
id: UBERON:0010421
name: spleen B cell corona
def: "the area of the (spleen) secondary B follicle that surrounds the germinal center and harbors the small recirculating B lymphocytes" [CL:tm, https://github.com/cmungall/uberon/issues/6, PMID:17495967]
synonym: "B cell domain of the spleen" BROAD [MP:0002360]
synonym: "B lymphocyte domain of the spleen" BROAD []
synonym: "follicle mantle" EXACT [MP:0002360]
synonym: "lymphocytic corona" BROAD [CL:tm, MP:0002360]
synonym: "spleen B cell corona" EXACT [MP:0002360]
synonym: "spleen B-cell corona" EXACT [MP:0002360]
synonym: "spleen lymphocytic corona" EXACT [CL:tm, MP:0002360]
synonym: "spleen mantle zone" RELATED [CL:tm, MP:0002360]
synonym: "splenic B cell corona" EXACT [MP:0002360]
synonym: "splenic corona" BROAD [CL:tm]
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0010755 ! secondary follicle corona
relationship: part_of UBERON:0002106
intersection_of: UBERON:0010755 ! secondary follicle corona
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0004042 {source="CL:tm"} ! spleen secondary B follicle
relationship: surrounds UBERON:0005196 ! spleen germinal center
[Term]
id: UBERON:0010422
name: primary nodular lymphoid tissue
def: "A lymphoid follicle containing naive B cells" [CL:tm]
comment: Location notes: The cortex of lymph nodes, the white pulp of spleen, and mucosa associated lymphoid tissue all have these primary follicles
synonym: "primary follicle" RELATED []
synonym: "primary lymphoid follicle" EXACT []
synonym: "primary lymphoid nodule" EXACT [FMA:55223]
xref: FMA:55223
is_a: UBERON:0000444 {source="FMA"} ! lymphoid follicle
[Term]
id: UBERON:0010423
name: primary lymphoid nodule of tonsil
synonym: "lymphoid nodule of tonsil" RELATED [FMA:86018]
xref: FMA:86018
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010422 {source="FMA"} ! primary nodular lymphoid tissue
relationship: part_of UBERON:0002372
intersection_of: UBERON:0010422 ! primary nodular lymphoid tissue
intersection_of: part_of UBERON:0002372 ! tonsil
relationship: part_of UBERON:0002372 ! tonsil
[Term]
id: UBERON:0010424
name: distal segment of rib
comment: The distal rib derives from both somite halves[PMID:15906248]
synonym: "distal part of rib" EXACT [PMID:15906248]
synonym: "distal rib" EXACT [MA:0001397]
synonym: "sternal rib" NARROW []
synonym: "vertical segment of rib" NARROW []
xref: MA:0001397
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
is_a: UBERON:0005175 ! chest organ
relationship: part_of UBERON:0002228 {source="MA"} ! rib
[Term]
id: UBERON:0010425
name: internal naris
synonym: "choana" EXACT []
synonym: "internal nostril" RELATED []
is_a: UBERON:0000003 {source="MA"} ! naris
[Term]
id: UBERON:0010426
name: oropharyngeal choana
def: "opening/conduit between the nasal cavity and the oropharynx via the roof of the mouth." [UBERON:cjm]
comment: Taxon notes: Aves. Function notes: has function in pressure equalization in birds that fly to high altitudes
synonym: "apertura nasalis interna" RELATED [AAO:0000025]
synonym: "cleft palate" RELATED []
synonym: "oropharyngeal naris" EXACT []
synonym: "palatal choana" EXACT []
synonym: "palatal cleft" RELATED []
xref: AAO:0000025
property_value: UBPROP:0000001 "Hole on the nasal capsule that connects the nasal and buccal cavites.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass nasal opening (AAO:0000316)[AAO]" xsd:string
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010425 ! internal naris
relationship: adjacent_to UBERON:0001729 ! oropharynx
relationship: part_of UBERON:0001716 ! secondary palate
[Term]
id: UBERON:0010427
name: ciliary processes
def: "The ciliary processes are formed by the inward folding of the various layers of the choroid, i.e. , the choroid proper and the lamina basalis, and are received between corresponding foldings of the suspensory ligament of the lens." [Wikipedia:Ciliary_processes]
synonym: "ciliary process" RELATED [Wikipedia:Ciliary_processes]
synonym: "ciliary processes" EXACT [FMA:76551]
synonym: "ciliary processes set" EXACT [FMA:76551]
synonym: "processus ciliares" EXACT [FMA:TA]
synonym: "processus ciliares" RELATED LATIN [Wikipedia:Ciliary_processes]
synonym: "set of ciliary processes" EXACT [FMA:76551]
xref: FMA:76551
xref: http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray875.png
xref: SCTID:280860001
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001775 ! ciliary body
[Term]
id: UBERON:0010428
name: flat bone
def: "Flat bones are those bones which are found where the principal requirement is either extensive protection or the provision of broad surfaces for muscular attachment, the bones are expanded into broad, flat plates, as in the cranium, the ilium, sternum, rib cage, the sacrum and the scapula. These bones are composed of two thin layers of compact tissue enclosing between them a variable quantity of cancellous tissue, which is the location of red bone marrow. In an adult, most red blood cells are formed in flat bones. In the cranial bones, the layers of compact tissue are familiarly known as the tables of the skull; the outer one is thick and tough; the inner is thin, dense, and brittle, and hence is termed the vitreous table. The intervening cancellous tissue is called the diploC+, and this, in certain regions of the skull, becomes absorbed so as to leave spaces filled with air (air-sinuses) between the two tables. The flat bones are: the occipital, parietal, frontal, nasal, lacrimal, vomer, scapula, os coxC&, sternum, and ribs." [Wikipedia:Flat_bone]
synonym: "os planum" RELATED LATIN [Wikipedia:Flat_bone]
xref: FMA:7476
xref: galen:FlatBone
xref: ncithesaurus:Flat_Bone
xref: SCTID:332907008
is_a: UBERON:0001474 {source="FMA"} ! bone
[Term]
id: UBERON:0010437
name: zygomaticus muscle
def: "One of: zygomaticus major, zygomaticus minor" []
comment: origin: posterior braincase
subset: grouping_class
synonym: "zygomaticus" EXACT [MA:0002404]
xref: MA:0002404
xref: ncithesaurus:Zygomaticus
is_a: UBERON:0002376 ! muscle of head
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0010467
name: teres muscle
synonym: "teres" EXACT []
xref: ncithesaurus:Teres_Muscle
xref: SCTID:277440006
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0010496
name: teres minor muscle
def: "a narrow, elongated muscle of the rotator cuff" [Wikipedia:Teres_minor_muscle]
synonym: "musculus teres minor" RELATED LATIN [Wikipedia:Teres_minor_muscle]
synonym: "teres minor" EXACT [FMA:32550]
xref: FMA:32550
xref: http://upload.wikimedia.org/wikipedia/commons/c/c4/Gray810.png
xref: ncithesaurus:Teres_Minor_Muscle
xref: SCTID:277445001
is_a: UBERON:0010467 ! teres muscle
relationship: has_muscle_insertion UBERON:0000976 {notes="inferior facet of greater tubercle of the humerus", source="dbpedia"} ! humerus
relationship: has_muscle_nerve UBERON:0001493 {source="dbpedia"} ! axillary nerve
relationship: has_muscle_origin UBERON:0007173 {source="dbpedia", notes="lateral border of the scapula"} ! lateral border of scapula
relationship: part_of UBERON:0003683 {source="Wikipedia"} ! rotator cuff
[Term]
id: UBERON:0010498
name: pseudostratified columnar epithelium
def: "Simple columnar epithelium in which not all the cells may reach the luminal surface of the epithelium and the nuclei are aligned in more than one row. Examples: olfactory epithelium, epithelium of bronchus." [FMA:45572]
comment: AO notes: glandular in NCIT
xref: FMA:45572
xref: ncithesaurus:Pseudostratified_Columnar_Epithelium
is_a: UBERON:0000485 {source="FMA"} ! simple columnar epithelium
[Term]
id: UBERON:0010499
name: pseudostratified ciliated columnar epithelium
def: "Epithelium composed of a single layer of cells, appearing as layered because the column-shaped cells vary in height so the nuclei are at different levels. The basal portions of all the cells are in contact with the basement membrane. It lines the respiratory system and the male reproductive tract. The cilia in the respiratory tract are motile, while the stereocilia in the male reproductive tract are immobile." [NCIT:NCIT]
synonym: "epithelium pseudostratificatum columnare ciliatum (trachea et bronchi)" EXACT [FMA:13146]
xref: FMA:13146
xref: ncithesaurus:Pseudostratified_Columnar_Ciliated_Epithelium
is_a: UBERON:0010498 {source="FMA"} ! pseudostratified columnar epithelium
[Term]
id: UBERON:0010501
name: pseudostratified smooth columnar epithelium
xref: FMA:72059
is_a: UBERON:0010498 {source="FMA"} ! pseudostratified columnar epithelium
[Term]
id: UBERON:0010504
name: round ligament
is_obsolete: true
consider: UBERON:0006588
consider: UBERON:0006589
[Term]
id: UBERON:0010505
name: periosteal dura mater
def: "The outermost of the two layers of the cranial dura mater which normally always adheres to the periosteum of the bones of the cranial vault" [UBERON:cjm]
synonym: "outer layer of dura mater" EXACT [FMA:231547]
synonym: "outer periosteal layer of dura mater" EXACT []
synonym: "periosteal dura" EXACT [FMA:231547]
synonym: "periosteal layer of dura mater" EXACT [FMA:231547]
xref: FMA:231547
xref: ncithesaurus:Periosteal_Layer_of_the_Dura_Mater
property_value: "spatially_disjoint_from" UBERON:0010506
is_a: UBERON:0010507 {source="FMA"} ! layer of dura mater
relationship: adjacent_to UBERON:0002515 ! periosteum
relationship: adjacent_to UBERON:0003129 ! skull
relationship: part_of UBERON:0002092 ! brain dura mater
[Term]
id: UBERON:0010506
name: meningeal dura mater
comment: Editors note: not clear whether this should be classified as part of cranial dura mater, as the division only makes sense in this area
synonym: "inner layer of dura mater" EXACT [FMA:231549]
synonym: "meningeal dura" EXACT [FMA:231549]
synonym: "meningeal layer of dura mater" EXACT [FMA:231549]
xref: FMA:231549
xref: ncithesaurus:Meningeal_Layer_of_the_Dura_Mater
is_a: UBERON:0010507 {source="FMA"} ! layer of dura mater
[Term]
id: UBERON:0010507
name: layer of dura mater
def: "The intracranial dura mater, consisting of two layers: the outer periosteal layer which normally always adheres to the periosteum of the bones of the cranial vault; and the inner meningeal layer which in most places is fused with the outer. The two layers separate to accommodate meningeal vessels and large venous (dural) sinuses. The meningeal layer is also involved in the formation of the various dural folds, such as the falx cerebri and tentorium cerebelli and is comparable to and continuous with the dural mater of the spinal cord. The cranial epidural space is then a potential space between the bone and the combined periosteum/periosteal layer of the dura mater realised only pathologically and is neither continuous with or comparable to the vertebral epidural space" [http://www.mondofacto.com/facts/dictionary?periosteal+layer+of+dura+mater]
comment: Editors note: not clear whether this should be classified as part of cranial dura mater, as the division only makes sense in this area
xref: FMA:231545
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 {source="FMA"} ! organ component layer
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0002363 {source="FMA"} ! dura mater
[Term]
id: UBERON:0010509
name: strand of pelage hair
synonym: "pelage hair" EXACT [MA:0001897]
xref: MA:0001897
is_a: UBERON:0001037 ! strand of hair
relationship: part_of UBERON:0010166
intersection_of: UBERON:0001037 ! strand of hair
intersection_of: part_of UBERON:0010166 ! coat of hair
relationship: part_of UBERON:0010166 ! coat of hair
[Term]
id: UBERON:0010510
name: strand of auchene hair
def: "A truncal hair that has a single constriction and bend about midway along the hair shaft, and contains two or more air cells in the medulla" [MP:0000405]
synonym: "auchene hair" EXACT [MA:0001893]
xref: MA:0001893
is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair
[Term]
id: UBERON:0010511
name: strand of awl hair
def: "A truncal hairs that is straight, but shorter than a guard hair, and contain two or more air cells in the medulla" [MP:0000400, Wikipedia:Awn_hair]
synonym: "awl hair" EXACT [MA:0001894]
xref: MA:0001894
is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair
[Term]
id: UBERON:0010512
name: strand of guard hair
def: "A long, straight truncal hair that contains two air cells in the medulla[MP]. A strand of hair from the top layer consisting of longer, often coarser, straight shafts of hair that stick out through the underfur. This is usually the visible layer for most mammals and contains most of the pigmentation. It protects the underfur from outside factors, such as rain, and is thus often water-repellent." [MP:0006365, Wikipedia:Guard_hair]
synonym: "guard hair" EXACT [MA:0001896]
xref: MA:0001896
is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair
[Term]
id: UBERON:0010513
name: strand of zigzag hair
def: "A truncal hair that has two or more sharp bends with diameter constrictions at the bends, and contain one air cell in the medulla." [MP:0006366]
synonym: "zigzag hair" EXACT [MA:0001898]
xref: MA:0001898
is_a: UBERON:0010509 {source="MA"} ! strand of pelage hair
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0010514
name: strand of duvet hair
def: "A strand of hair from the fine underhair of the coat" [MP:0000408]
comment: AO notes - not a pelage hair in MA, but is in MP
synonym: "duvet hair" EXACT [MA:0001895]
xref: MA:0001895
is_a: UBERON:0001037 {source="MA"} ! strand of hair
[Term]
id: UBERON:0010515
name: brille
def: "layer of transparent, immovable disc-shaped skin or scale covering the eyes of some animals for protection, especially in animals without eyelids. The brille has evolved from a fusion of the upper and lower eyelids." [Wikipedia:Brille]
comment: Taxon notes: In snakes, there is no eyelid and the brille is clear and cannot be distinguished except when the animal is becoming ready for ecdysis. At that time, it becomes cloudy and is visible as a cover over the eye. When the snake moults, the brille is also shed as part of its skin. The Brilles protect their eyes from dust and dirt and gives them a "glassy-eyed" blank appearance Snakes, flap-footed lizards, night lizards, and some skinks have brilles. All geckos except those in the subfamily Eublepharinae (eyelid geckos) possess brilles. Fish also have transparent eyelids called adipose eyelids.
synonym: "eye cap" RELATED []
synonym: "ocular scale" RELATED []
is_a: UBERON:1000021 ! skin of face
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0010516
name: clasper
def: "a male anatomical structure found some groups of animals, used in mating. Male cartilaginous fish have claspers formed from the posterior portion of their pelvic fin which serve as intromittent organs used to channel semen into the female's cloaca during mating. The act of mating in some fish including sharks usually includes one of the claspers raised to allow water into the siphon through a specific orifice. The clasper is then inserted into the vagina, where it opens like an umbrella to anchor its position. The siphon then begins to contract expelling water and sperm. Male chimaeras have cephalic claspers on their heads, which are thought to aid in holding the female during mating" [Wikipedia:clasper]
comment: Taxon notes: the term is also used for insect claspers, but we reserve it for the elasmobranchii structure
is_a: UBERON:0008811 {source="Wikipedia"} ! intromittent organ
[Term]
id: UBERON:0010517
name: cephalic clasper
def: "A mace-like spiny-headed rod found on the mid-dorsal surface of heads of male Holocephali. Thought to aid in holding the female during copulation." [http://fishbase.org/glossary/Glossary.php?q=tenaculum, http://www.fishbase.org/glossary/Glossary.php?q=cephalic+clasper, Wikipedia:Chimaera#Description_and_tastes]
synonym: "anterior tenaculum" RELATED []
synonym: "head clasper" RELATED [http://www.fishbase.org/glossary/Glossary.php?q=head+clasper]
synonym: "tenaculum" RELATED []
is_a: UBERON:0010516 ! clasper
relationship: part_of UBERON:0000033
intersection_of: UBERON:0010516 ! clasper
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0010518
name: pelvic fin clasper
def: "The rod-like extension of the medial portion of the pelvic fin in male Elasmobranchii and Holocephali. Claspers are used as intromittent organs (not in clasping), the grooves on their facing surfaces together forming a tube for the transmission of sperm when the claspers are held together. The anterior proximal opening is called the apopyle, the posterior distal opening the rhipidion" [http://fishbase.org/Glossary/Glossary.php?q=clasper]
synonym: "clapser" RELATED []
synonym: "myxopterygium" EXACT [http://fishbase.org/Glossary/Glossary.php?q=clasper]
is_a: UBERON:0010516 ! clasper
relationship: part_of UBERON:0000152
intersection_of: UBERON:0010516 ! clasper
intersection_of: part_of UBERON:0000152 ! pelvic fin
relationship: part_of UBERON:0000152 ! pelvic fin
[Term]
id: UBERON:0010519
name: tail electric organ
xref: BTO:0000376
is_a: UBERON:0006869 ! electric organ
relationship: part_of UBERON:0002415
intersection_of: UBERON:0006869 ! electric organ
intersection_of: part_of UBERON:0002415 ! tail
relationship: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0010520
name: head electric organ
comment: Taxon notes: electric ray
is_a: UBERON:0006869 ! electric organ
relationship: part_of UBERON:0000033
intersection_of: UBERON:0006869 ! electric organ
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0010521
name: electroreceptor organ
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0010522
name: replacement element
def: "Skeletal element that forms as a replacement or substitution of another element or tissue." [VSAO:0000135]
xref: VSAO:0000135
xref: XAO:0004016
xref: ZFA:0005624
is_a: UBERON:0004765 {source="VSAO"} ! skeletal element
[Term]
id: UBERON:0010523
name: microcirculatory vessel
def: "A portion of tissue that consists of a tube composed of epithelial cells that connects larger vessels." [ZFA:0005251]
synonym: "vasculature" RELATED [ZFA:0005251]
xref: TAO:0005251
xref: ZFA:0005251
is_a: UBERON:0000055 ! vessel
relationship: part_of UBERON:0002049 {source="ZFA"} ! vasculature
[Term]
id: UBERON:0010524
name: fibularis tertius
def: "The peroneus tertius (also known as fibularis tertius) is a muscle of the human body located in the lower limb. The muscle arises from the lower third of the anterior surface of the fibula; from the lower part of the interosseous membrane; and from an intermuscular septum between it and the peroneus brevis. The tendon, after passing under the superior extensor retinaculum of foot and inferior extensor retinaculum of foot in the same canal as the extensor digitorum longus, is inserted into the dorsal surface of the base of the metatarsal bone of the 5th digit. It is innervated by the deep fibular nerve. Its action is that of weak dorsiflexion of the ankle joint and to evert the foot at the ankle joint." [Wikipedia:Peroneus_tertius_muscle]
synonym: "fibularis tertius" RELATED [Wikipedia:Peroneus_tertius]
synonym: "fibularis tertius muscle" RELATED [Wikipedia:Peroneus_tertius]
synonym: "musculus peroneus tertius" EXACT [FMA:TA]
synonym: "peronaeus tertius" RELATED [Wikipedia:Peroneus_tertius]
synonym: "peroneus tertius" EXACT [FMA:22538]
synonym: "peroneus tertius" EXACT [Wikipedia:Peroneus_tertius]
synonym: "peroneus tertius muscle" EXACT [Wikipedia:Peroneus_tertius]
xref: FMA:22538
xref: SCTID:181701000
is_a: UBERON:0009132 ! peroneus
[Term]
id: UBERON:0010526
name: fibularis brevis
def: "The peroneus brevis muscle (or fibularis brevis) lies under cover of the peroneus longus, and is a shorter and smaller muscle." [Wikipedia:Peroneus_brevis]
synonym: "fibularis brevis" RELATED [Wikipedia:Peroneus_brevis]
synonym: "musculus peroneus brevis" EXACT [FMA:TA]
synonym: "peronaeus brevis" EXACT [Wikipedia:Peroneus_brevis]
synonym: "peroneus brevis" EXACT [FMA:22540]
synonym: "peroneus brevis muscle" EXACT [Wikipedia:Peroneus_brevis]
synonym: "peronius brevis" RELATED [Wikipedia:Peroneus_brevis]
xref: FMA:22540
xref: http://upload.wikimedia.org/wikipedia/commons/3/3d/Gray357.png
xref: SCTID:181704008
is_a: UBERON:0009132 ! peroneus
relationship: has_muscle_origin UBERON:0001446 {source="dbpedia"} ! fibula
[Term]
id: UBERON:0010527
name: cavity of bone organ
synonym: "bone organ cavity" EXACT [FMA:24021]
xref: FMA:24021
is_a: UBERON:0002558 ! organ cavity
relationship: surrounded_by UBERON:0001474
intersection_of: UBERON:0002558 ! organ cavity
intersection_of: surrounded_by UBERON:0001474 ! bone
relationship: surrounded_by UBERON:0001474 ! bone
[Term]
id: UBERON:0010528
name: pneumatic cavity of bone
synonym: "air space of bone" EXACT [FMA:24028]
xref: FMA:24028
is_a: UBERON:0010527 {source="FMA"} ! cavity of bone organ
relationship: part_of UBERON:0008193 ! pneumatized bone
[Term]
id: UBERON:0010531
name: metanephros induced blastemal cells
def: "." [http://www.embryology.ch/anglais/turinary/urinhaute03.html]
synonym: "induced blastemal cells" EXACT [VHOG:0001241]
synonym: "peripheral blastema" RELATED [EMAPA:17953]
xref: EHDAA2:0001143
xref: EHDAA:7007
xref: EHDAA:8105
xref: EMAPA:17645
xref: EMAPA:17953
xref: VHOG:0001241
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0003220 {source="EHDAA2"} ! metanephric mesenchyme
relationship: induced_by UBERON:0000084 ! ureteric bud
[Term]
id: UBERON:0010532
name: primitive nephron
synonym: "developing nephron" BROAD []
synonym: "primitive nephron" BROAD []
is_a: UBERON:0001285 {source="ZFA-inferred"} ! nephron
is_a: UBERON:0003914 {source="EHDAA2-inferred"} ! epithelial tube
is_a: UBERON:0004819 ! kidney epithelium
is_a: UBERON:0006555 ! excretory tube
relationship: develops_from UBERON:0004209 {source="EHDAA2"} ! renal vesicle
relationship: part_of UBERON:0003918 ! kidney mesenchyme
[Term]
id: UBERON:0010533
name: metanephros cortex
def: "The metanephric cortex is the outer region of the metanephros[GO]." [GO:0072214]
xref: VHOG:0000714
is_a: UBERON:0001225 ! cortex of kidney
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001225 ! cortex of kidney
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: develops_from UBERON:0005113 ! metanephric cortex mesenchyme
relationship: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 {source="VHOG"} ! metanephros
[Term]
id: UBERON:0010534
name: primitive mesonephric nephron
def: "Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells." [ZFA:0005587]
synonym: "developing mesonephric nephron" EXACT [ZFA:0005584]
synonym: "primitive mesonephric nephron" EXACT []
xref: ZFA:0005584
is_a: UBERON:0000083 ! mesonephric tubule
is_a: UBERON:0005322 ! mesonephric nephron
is_a: UBERON:0010532 ! primitive nephron
relationship: part_of UBERON:0000080
intersection_of: UBERON:0010532 ! primitive nephron
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0010535
name: primitive metanephric nephron
synonym: "developing metanephric nephron" EXACT []
synonym: "primitive metanephric nephron" EXACT []
synonym: "primitive nephron" BROAD [EHDAA2:0001516]
xref: EHDAA2:0001516
is_a: UBERON:0005106 ! metanephric tubule
is_a: UBERON:0005110 ! metanephric nephron
is_a: UBERON:0010532 ! primitive nephron
relationship: part_of UBERON:0000081
intersection_of: UBERON:0010532 ! primitive nephron
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0005113 {source="EHDAA2"} ! metanephric cortex mesenchyme
[Term]
id: UBERON:0010536
name: nephron progenitor
is_a: UBERON:0000479 {source="ZFA"} ! tissue
relationship: part_of UBERON:0003918 {source="cjm"} ! kidney mesenchyme
[Term]
id: UBERON:0010537
name: mesonephric nephron progenitor
def: "Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells." [ZFA:0005587]
xref: ZFA:0005587
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0010536 ! nephron progenitor
relationship: part_of UBERON:0000080
intersection_of: UBERON:0010536 ! nephron progenitor
intersection_of: part_of UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0010538
name: limb/fin segment
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010758 ! appendage segment
relationship: part_of UBERON:0004708
intersection_of: UBERON:0010758 ! appendage segment
intersection_of: part_of UBERON:0004708 ! limb/fin
disjoint_from: UBERON:0010912 ! subdivision of skeleton
relationship: part_of UBERON:0004708 ! limb/fin
[Term]
id: UBERON:0010540
name: tarsus pre-cartilage condensation
xref: EHDAA2:0001978
is_a: UBERON:0003328 ! mesenchyme of footplate
is_a: UBERON:0010695 ! mesenchyme of tarsal region
is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation
relationship: develops_into UBERON:0001447
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0001447 ! tarsal bone
relationship: develops_from UBERON:0010695 ! mesenchyme of tarsal region
relationship: develops_into UBERON:0001447 ! tarsal bone
relationship: part_of UBERON:0001445 {source="EHDAA2"} ! skeleton of foot
relationship: part_of UBERON:0003328 ! mesenchyme of footplate
relationship: part_of UBERON:0004454 ! tarsal region
[Term]
id: UBERON:0010541
name: tarsus cartilage condensation
xref: EHDAA2:0001977
is_a: UBERON:0003328 ! mesenchyme of footplate
is_a: UBERON:0010695 ! mesenchyme of tarsal region
is_a: UBERON:0010885 ! hindlimb bone cartilaginous condensation
relationship: develops_into UBERON:0001447
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0001447 ! tarsal bone
relationship: develops_from UBERON:0010540 {source="EHDAA2"} ! tarsus pre-cartilage condensation
relationship: develops_into UBERON:0001447 ! tarsal bone
relationship: part_of UBERON:0001445 {source="EHDAA2"} ! skeleton of foot
relationship: part_of UBERON:0003328 {source="EHDAA2"} ! mesenchyme of footplate
relationship: part_of UBERON:0004454 ! tarsal region
[Term]
id: UBERON:0010543
name: skeleton of acropodium
def: "Endochondral terminal bones at the distalmost end of the autopodium, consisting of the phalanges." [VSAO:0005028, VSAO:NI]
comment: Editor notes: this is not defined in terms of a region, unlike the other autopod subdivisions
synonym: "acropodial skeleton" EXACT []
synonym: "acropodium" RELATED [VSAO:0005028, VSAO:NI]
synonym: "acropodium skeleton" EXACT []
synonym: "digit skeleton" EXACT []
synonym: "digital skeleton" EXACT []
synonym: "set of phalanges" EXACT [FMA:231315]
synonym: "skeleton of digits" EXACT []
xref: FMA:231315
xref: VSAO:0005028
is_a: UBERON:0010712 ! limb skeleton subdivision
relationship: has_part UBERON:0003221 ! phalanx
relationship: part_of UBERON:0006717 ! skeleton of autopod
relationship: proximally_connected_to UBERON:0010546 ! metapodium skeleton
[Term]
id: UBERON:0010544
name: metacarpus skeleton
def: "The metacarpus is the intermediate part of the hand skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]." [Wikipedia:Metacarpus]
synonym: "anterior metapodium" RELATED [VSAO:0005026, VSAO:NI]
synonym: "anterior metapodium skeleton" EXACT []
synonym: "fore metapodium" RELATED [AAO:0000946, http://en.wiktionary.org/wiki/metapodial, MA:th]
synonym: "fore metapodium skeleton" RELATED []
synonym: "metacarpal bones" EXACT [FMA:71336]
synonym: "metacarpal skeleton" EXACT []
synonym: "metacarpalia" RELATED LATIN [Wikipedia:Metacarpus]
synonym: "metacarpals [I-V]" EXACT [FMA:71336]
synonym: "metacarpals set" EXACT [FMA:71336]
synonym: "set of metacarpal bones" EXACT [FMA:71336]
synonym: "set of metacarpals" EXACT [FMA:71336]
synonym: "set of metacarpals [I-V]" EXACT [FMA:71336]
synonym: "skeleton of metacarpus" EXACT []
xref: AAO:0000946
xref: FMA:71336
xref: http://upload.wikimedia.org/wikipedia/commons/2/2f/Metacarpals_numbered-en.svg
xref: MESH:A.02.835.232.087.535
xref: VSAO:0005026
xref: XAO:0003208
property_value: UBPROP:0000001 "Segment of the forearm corresponding to the metacarpus, which articulates with the carpals at one end and with the phalanges at the other end.[AAO]" xsd:string
is_a: UBERON:0010546 ! metapodium skeleton
relationship: subdivision_of UBERON:0004453
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0004453 ! metacarpus region
relationship: develops_from UBERON:0010699 {notes="many to one"} ! finger metacarpus cartilage condensation
relationship: part_of UBERON:0001440 {source="XAO"} ! forelimb skeleton
relationship: part_of UBERON:0004453 ! metacarpus region
relationship: proximally_connected_to UBERON:0009880 ! carpal skeleton
relationship: subdivision_of UBERON:0004453 ! metacarpus region
[Term]
id: UBERON:0010545
name: metatarsus skeleton
def: "Limb segment that consists of the long bones of the foot. The metatarsals are analogous to the metacarpal bones of the hand." [Wikipedia:Metatarsus]
synonym: "metatarsal bones set" EXACT [FMA:71340]
synonym: "metatarsal skeleton" EXACT []
synonym: "metatarsals [I-V]" EXACT [FMA:71340]
synonym: "posterior metapodium" RELATED [VSAO:0005027, VSAO:NI]
synonym: "posterior metapodium skeleton" EXACT []
synonym: "set of metatarsal bones" EXACT [FMA:71340]
synonym: "set of metatarsals [I-V]" EXACT [FMA:71340]
synonym: "skeleton of metatarsus" EXACT []
xref: AAO:0000221
xref: FMA:71340
xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Gray291.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MESH:A.01.378.610.250.300.480
xref: OpenCyc:Mx4rva_rBJwpEbGdrcN5Y29ycA
xref: VSAO:0005027
xref: XAO:0003212
property_value: UBPROP:0000001 "Segment of the leg corresponding to the metatarsus, which articulates with the carpals at one end and with the phalanges at the other end.[AAO]" xsd:string
is_a: UBERON:0010546 ! metapodium skeleton
relationship: subdivision_of UBERON:0000983
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0000983 ! metatarsus region
relationship: develops_from UBERON:0010697 {notes="many to one"} ! toe metatarsal cartilage condensation
relationship: part_of UBERON:0000983 ! metatarsus region
relationship: part_of UBERON:0001441 {source="XAO"} ! hindlimb skeleton
relationship: proximally_connected_to UBERON:0009879 ! tarsal skeleton
relationship: subdivision_of UBERON:0000983 ! metatarsus region
[Term]
id: UBERON:0010546
name: metapodium skeleton
def: "Subdivision of skeleton that corresponds to metapodium region, between acropodial skeleton and mesopdoial skeleton." [UBERON:cjm]
synonym: "metacarpal/metatarsal skeleton" EXACT []
synonym: "metapodial skeleton" EXACT [VSAO:0005025]
synonym: "metapodium" RELATED [VSAO:0005025, VSAO:NI]
synonym: "skeleton of metapodium" EXACT []
xref: VSAO:0005025
property_value: UBPROP:0000001 "Endochondral bone complex located between the mesopodium and the acropodium and consisting of the metacarpals or metatarsals.[VSAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: distally_connected_to subdivision of skeleton (UBERON:0010912)[VSAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: transitively_connected_to subdivision of skeleton (UBERON:0010912)[VSAO]" xsd:string
is_a: UBERON:0010712 ! limb skeleton subdivision
relationship: subdivision_of UBERON:0009877
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0009877 ! metapodium region
relationship: distally_connected_to UBERON:0010543 ! skeleton of acropodium
relationship: part_of UBERON:0006717 ! skeleton of autopod
relationship: part_of UBERON:0009877 ! metapodium region
relationship: proximally_connected_to UBERON:0009878 ! mesopodium skeleton
relationship: subdivision_of UBERON:0009877 ! metapodium region
[Term]
id: UBERON:0010547
name: toe 1 metatarsal pre-cartilage condensation
xref: EHDAA2:0002040
xref: EMAPA:17725
is_a: UBERON:0010580 ! toe 1 phalanx pre-cartilage condensation
is_a: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
relationship: part_of UBERON:0010562
intersection_of: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: part_of UBERON:0010562 ! toe 1 mesenchyme
relationship: part_of UBERON:0010562 ! toe 1 mesenchyme
[Term]
id: UBERON:0010548
name: toe 2 metatarsal pre-cartilage condensation
xref: EHDAA2:0002045
xref: EMAPA:17727
is_a: UBERON:0010581 ! toe 2 phalanx pre-cartilage condensation
is_a: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
relationship: part_of UBERON:0005696
intersection_of: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: part_of UBERON:0005696 ! toe 2 mesenchyme
relationship: part_of UBERON:0005696 ! toe 2 mesenchyme
[Term]
id: UBERON:0010549
name: toe 3 metatarsal pre-cartilage condensation
xref: EHDAA2:0002050
xref: EMAPA:17729
is_a: UBERON:0010582 ! toe 3 phalanx pre-cartilage condensation
is_a: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
relationship: part_of UBERON:0005697
intersection_of: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: part_of UBERON:0005697 ! toe 3 mesenchyme
relationship: part_of UBERON:0005697 ! toe 3 mesenchyme
[Term]
id: UBERON:0010550
name: toe 4 metatarsal pre-cartilage condensation
xref: EHDAA2:0002055
xref: EMAPA:17731
is_a: UBERON:0010583 ! toe 4 phalanx pre-cartilage condensation
is_a: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
relationship: part_of UBERON:0005698
intersection_of: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: part_of UBERON:0005698 ! toe 4 mesenchyme
relationship: part_of UBERON:0005698 ! toe 4 mesenchyme
[Term]
id: UBERON:0010551
name: toe 5 metatarsal pre-cartilage condensation
xref: EHDAA2:0002060
xref: EMAPA:17733
is_a: UBERON:0010584 ! toe 5 phalanx pre-cartilage condensation
is_a: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
relationship: part_of UBERON:0005699
intersection_of: UBERON:0010687 ! toe metatarsal pre-cartilage condensation
intersection_of: part_of UBERON:0005699 ! toe 5 mesenchyme
relationship: part_of UBERON:0005699 ! toe 5 mesenchyme
[Term]
id: UBERON:0010557
name: toe 1 metatarsal cartilage condensation
xref: EMAPA:18106
is_a: UBERON:0010680 ! toe 1 phalanx cartilage condensation
is_a: UBERON:0010697 ! toe metatarsal cartilage condensation
relationship: part_of UBERON:0010562
intersection_of: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: part_of UBERON:0010562 ! toe 1 mesenchyme
relationship: develops_from UBERON:0010547 ! toe 1 metatarsal pre-cartilage condensation
relationship: part_of UBERON:0010562 ! toe 1 mesenchyme
[Term]
id: UBERON:0010558
name: toe 2 metatarsal cartilage condensation
xref: EMAPA:18111
is_a: UBERON:0010681 ! toe 2 phalanx cartilage condensation
is_a: UBERON:0010697 ! toe metatarsal cartilage condensation
relationship: part_of UBERON:0005696
intersection_of: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: part_of UBERON:0005696 ! toe 2 mesenchyme
relationship: develops_from UBERON:0010548 ! toe 2 metatarsal pre-cartilage condensation
relationship: part_of UBERON:0005696 ! toe 2 mesenchyme
[Term]
id: UBERON:0010559
name: toe 3 metatarsal cartilage condensation
xref: EMAPA:18116
is_a: UBERON:0010682 ! toe 3 phalanx cartilage condensation
is_a: UBERON:0010697 ! toe metatarsal cartilage condensation
relationship: part_of UBERON:0005697
intersection_of: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: part_of UBERON:0005697 ! toe 3 mesenchyme
relationship: develops_from UBERON:0010549 ! toe 3 metatarsal pre-cartilage condensation
relationship: part_of UBERON:0005697 ! toe 3 mesenchyme
[Term]
id: UBERON:0010560
name: toe 4 metatarsal cartilage condensation
xref: EMAPA:18121
is_a: UBERON:0010683 ! toe 4 phalanx cartilage condensation
is_a: UBERON:0010697 ! toe metatarsal cartilage condensation
relationship: part_of UBERON:0005698
intersection_of: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: part_of UBERON:0005698 ! toe 4 mesenchyme
relationship: develops_from UBERON:0010550 ! toe 4 metatarsal pre-cartilage condensation
relationship: part_of UBERON:0005698 ! toe 4 mesenchyme
[Term]
id: UBERON:0010561
name: toe 5 metatarsal cartilage condensation
xref: EMAPA:18126
is_a: UBERON:0010684 ! toe 5 phalanx cartilage condensation
is_a: UBERON:0010697 ! toe metatarsal cartilage condensation
relationship: part_of UBERON:0005699
intersection_of: UBERON:0010697 ! toe metatarsal cartilage condensation
intersection_of: part_of UBERON:0005699 ! toe 5 mesenchyme
relationship: develops_from UBERON:0010551 ! toe 5 metatarsal pre-cartilage condensation
relationship: part_of UBERON:0005699 ! toe 5 mesenchyme
[Term]
id: UBERON:0010562
name: toe 1 mesenchyme
xref: EHDAA2:0002039
xref: EMAPA:17462
is_a: UBERON:0005255 ! foot digit mesenchyme
relationship: part_of UBERON:0003631
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003631 ! foot digit 1
relationship: part_of UBERON:0003631 ! foot digit 1
[Term]
id: UBERON:0010564
name: finger 1 mesenchyme
xref: EHDAA2:0000513
xref: EMAPA:17431
is_a: UBERON:0005257 ! hand digit mesenchyme
relationship: part_of UBERON:0001463
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001463 ! hand digit 1
relationship: part_of UBERON:0001463 ! hand digit 1
[Term]
id: UBERON:0010565
name: finger 1 metacarpus pre-cartilage condensation
xref: EHDAA2:0000515
xref: EMAPA:17714
is_a: UBERON:0010575 ! finger 1 phalanx pre-cartilage condensation
is_a: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
relationship: part_of UBERON:0010564
intersection_of: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: part_of UBERON:0010564 ! finger 1 mesenchyme
relationship: part_of UBERON:0010564 ! finger 1 mesenchyme
[Term]
id: UBERON:0010566
name: finger 2 metacarpus pre-cartilage condensation
xref: EHDAA2:0000521
xref: EMAPA:17716
is_a: UBERON:0010576 ! finger 2 phalanx pre-cartilage condensation
is_a: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005692
intersection_of: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: part_of UBERON:0005692 ! finger 2 mesenchyme
relationship: part_of UBERON:0005692 ! finger 2 mesenchyme
[Term]
id: UBERON:0010567
name: finger 3 metacarpus pre-cartilage condensation
xref: EHDAA2:0000527
xref: EMAPA:17718
is_a: UBERON:0010577 ! finger 3 phalanx pre-cartilage condensation
is_a: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005693
intersection_of: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: part_of UBERON:0005693 ! finger 3 mesenchyme
relationship: part_of UBERON:0005693 ! finger 3 mesenchyme
[Term]
id: UBERON:0010568
name: finger 4 metacarpus pre-cartilage condensation
xref: EHDAA2:0000533
xref: EMAPA:17720
is_a: UBERON:0010578 ! finger 4 phalanx pre-cartilage condensation
is_a: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005694
intersection_of: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: part_of UBERON:0005694 ! finger 4 mesenchyme
relationship: part_of UBERON:0005694 ! finger 4 mesenchyme
[Term]
id: UBERON:0010569
name: finger 5 metacarpus pre-cartilage condensation
xref: EHDAA2:0000539
xref: EMAPA:17722
is_a: UBERON:0010579 ! finger 5 phalanx pre-cartilage condensation
is_a: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005695
intersection_of: UBERON:0010698 ! finger metacarpus pre-cartilage condensation
intersection_of: part_of UBERON:0005695 ! finger 5 mesenchyme
relationship: part_of UBERON:0005695 ! finger 5 mesenchyme
[Term]
id: UBERON:0010570
name: finger 1 metacarpus cartilage condensation
xref: EHDAA2:0000514
xref: EMAPA:18065
is_a: UBERON:0010675 ! finger 1 phalanx cartilage condensation
is_a: UBERON:0010699 ! finger metacarpus cartilage condensation
relationship: part_of UBERON:0010564
intersection_of: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: part_of UBERON:0010564 ! finger 1 mesenchyme
relationship: develops_from UBERON:0010565 ! finger 1 metacarpus pre-cartilage condensation
relationship: part_of UBERON:0010564 ! finger 1 mesenchyme
[Term]
id: UBERON:0010571
name: finger 2 metacarpus cartilage condensation
xref: EHDAA2:0000520
xref: EMAPA:18070
is_a: UBERON:0010676 ! finger 2 phalanx cartilage condensation
is_a: UBERON:0010699 ! finger metacarpus cartilage condensation
relationship: part_of UBERON:0005692
intersection_of: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: part_of UBERON:0005692 ! finger 2 mesenchyme
relationship: develops_from UBERON:0010566 ! finger 2 metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005692 ! finger 2 mesenchyme
[Term]
id: UBERON:0010572
name: finger 3 metacarpus cartilage condensation
xref: EHDAA2:0000526
xref: EMAPA:18075
is_a: UBERON:0010677 ! finger 3 phalanx cartilage condensation
is_a: UBERON:0010699 ! finger metacarpus cartilage condensation
relationship: part_of UBERON:0005693
intersection_of: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: part_of UBERON:0005693 ! finger 3 mesenchyme
relationship: develops_from UBERON:0010567 ! finger 3 metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005693 ! finger 3 mesenchyme
[Term]
id: UBERON:0010573
name: finger 4 metacarpus cartilage condensation
xref: EHDAA2:0000532
xref: EMAPA:18080
is_a: UBERON:0010678 ! finger 4 phalanx cartilage condensation
is_a: UBERON:0010699 ! finger metacarpus cartilage condensation
relationship: part_of UBERON:0005694
intersection_of: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: part_of UBERON:0005694 ! finger 4 mesenchyme
relationship: develops_from UBERON:0010568 ! finger 4 metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005694 ! finger 4 mesenchyme
[Term]
id: UBERON:0010574
name: finger 5 metacarpus cartilage condensation
xref: EHDAA2:0000538
xref: EMAPA:18085
is_a: UBERON:0010679 ! finger 5 phalanx cartilage condensation
is_a: UBERON:0010699 ! finger metacarpus cartilage condensation
relationship: part_of UBERON:0005695
intersection_of: UBERON:0010699 ! finger metacarpus cartilage condensation
intersection_of: part_of UBERON:0005695 ! finger 5 mesenchyme
relationship: develops_from UBERON:0010569 ! finger 5 metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005695 ! finger 5 mesenchyme
[Term]
id: UBERON:0010575
name: finger 1 phalanx pre-cartilage condensation
xref: EHDAA2:0000516
xref: EMAPA:17715
is_a: UBERON:0010564 ! finger 1 mesenchyme
is_a: UBERON:0010586 ! finger phalanx pre-cartilage condensation
relationship: part_of UBERON:0010564
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0010564 ! finger 1 mesenchyme
relationship: part_of UBERON:0010564 ! finger 1 mesenchyme
[Term]
id: UBERON:0010576
name: finger 2 phalanx pre-cartilage condensation
xref: EHDAA2:0000522
xref: EMAPA:17717
is_a: UBERON:0005692 ! finger 2 mesenchyme
is_a: UBERON:0010586 ! finger phalanx pre-cartilage condensation
relationship: part_of UBERON:0005692
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005692 ! finger 2 mesenchyme
relationship: part_of UBERON:0005692 ! finger 2 mesenchyme
[Term]
id: UBERON:0010577
name: finger 3 phalanx pre-cartilage condensation
xref: EHDAA2:0000528
xref: EMAPA:17719
is_a: UBERON:0005693 ! finger 3 mesenchyme
is_a: UBERON:0010586 ! finger phalanx pre-cartilage condensation
relationship: part_of UBERON:0005693
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005693 ! finger 3 mesenchyme
relationship: part_of UBERON:0005693 ! finger 3 mesenchyme
[Term]
id: UBERON:0010578
name: finger 4 phalanx pre-cartilage condensation
xref: EHDAA2:0000534
xref: EMAPA:17721
is_a: UBERON:0005694 ! finger 4 mesenchyme
is_a: UBERON:0010586 ! finger phalanx pre-cartilage condensation
relationship: part_of UBERON:0005694
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005694 ! finger 4 mesenchyme
relationship: part_of UBERON:0005694 ! finger 4 mesenchyme
[Term]
id: UBERON:0010579
name: finger 5 phalanx pre-cartilage condensation
xref: EHDAA2:0000540
xref: EMAPA:17723
is_a: UBERON:0005695 ! finger 5 mesenchyme
is_a: UBERON:0010586 ! finger phalanx pre-cartilage condensation
relationship: part_of UBERON:0005695
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005695 ! finger 5 mesenchyme
relationship: part_of UBERON:0005695 ! finger 5 mesenchyme
[Term]
id: UBERON:0010580
name: toe 1 phalanx pre-cartilage condensation
xref: EHDAA2:0002041
xref: EMAPA:17726
is_a: UBERON:0010562 ! toe 1 mesenchyme
is_a: UBERON:0010585 ! toe phalanx pre-cartilage condensation
relationship: part_of UBERON:0010562
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0010562 ! toe 1 mesenchyme
relationship: part_of UBERON:0010562 ! toe 1 mesenchyme
[Term]
id: UBERON:0010581
name: toe 2 phalanx pre-cartilage condensation
xref: EHDAA2:0002046
xref: EMAPA:17728
is_a: UBERON:0005696 ! toe 2 mesenchyme
is_a: UBERON:0010585 ! toe phalanx pre-cartilage condensation
relationship: part_of UBERON:0005696
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005696 ! toe 2 mesenchyme
relationship: part_of UBERON:0005696 ! toe 2 mesenchyme
[Term]
id: UBERON:0010582
name: toe 3 phalanx pre-cartilage condensation
xref: EHDAA2:0002051
xref: EMAPA:17730
is_a: UBERON:0005697 ! toe 3 mesenchyme
is_a: UBERON:0010585 ! toe phalanx pre-cartilage condensation
relationship: part_of UBERON:0005697
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005697 ! toe 3 mesenchyme
relationship: part_of UBERON:0005697 ! toe 3 mesenchyme
[Term]
id: UBERON:0010583
name: toe 4 phalanx pre-cartilage condensation
xref: EHDAA2:0002056
xref: EMAPA:17732
is_a: UBERON:0005698 ! toe 4 mesenchyme
is_a: UBERON:0010585 ! toe phalanx pre-cartilage condensation
relationship: part_of UBERON:0005698
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005698 ! toe 4 mesenchyme
relationship: part_of UBERON:0005698 ! toe 4 mesenchyme
[Term]
id: UBERON:0010584
name: toe 5 phalanx pre-cartilage condensation
xref: EHDAA2:0002061
xref: EMAPA:17734
is_a: UBERON:0005699 ! toe 5 mesenchyme
is_a: UBERON:0010585 ! toe phalanx pre-cartilage condensation
relationship: part_of UBERON:0005699
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005699 ! toe 5 mesenchyme
relationship: part_of UBERON:0005699 ! toe 5 mesenchyme
[Term]
id: UBERON:0010585
name: toe phalanx pre-cartilage condensation
synonym: "foot phalanx pre-cartilage condensation" EXACT [VHOG:0000952]
synonym: "hindlimb phalanx pre-cartilage condensation" EXACT []
synonym: "pes phalanx pre-cartilage condensation" EXACT []
xref: VHOG:0000952
is_a: UBERON:0005255 ! foot digit mesenchyme
is_a: UBERON:0010700 ! phalanx pre-cartilage condensation
relationship: part_of UBERON:0005255
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005255 ! foot digit mesenchyme
relationship: part_of UBERON:0005255 ! foot digit mesenchyme
[Term]
id: UBERON:0010586
name: finger phalanx pre-cartilage condensation
synonym: "forelimb phalanx pre-cartilage condensation" EXACT []
synonym: "hand phalanx pre-cartilage condensation" EXACT [VHOG:0000954]
synonym: "manus phalanx pre-cartilage condensation" EXACT []
xref: VHOG:0000954
is_a: UBERON:0005257 ! hand digit mesenchyme
is_a: UBERON:0010700 ! phalanx pre-cartilage condensation
relationship: part_of UBERON:0005257
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0005257 ! hand digit mesenchyme
relationship: part_of UBERON:0005257 ! hand digit mesenchyme
[Term]
id: UBERON:0010675
name: finger 1 phalanx cartilage condensation
xref: EMAPA:18066
is_a: UBERON:0010564 ! finger 1 mesenchyme
is_a: UBERON:0010686 ! finger phalanx cartilage condensation
relationship: part_of UBERON:0010564
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0010564 ! finger 1 mesenchyme
relationship: develops_from UBERON:0010575 ! finger 1 phalanx pre-cartilage condensation
relationship: part_of UBERON:0010564 ! finger 1 mesenchyme
[Term]
id: UBERON:0010676
name: finger 2 phalanx cartilage condensation
xref: EMAPA:18071
is_a: UBERON:0005692 ! finger 2 mesenchyme
is_a: UBERON:0010686 ! finger phalanx cartilage condensation
relationship: part_of UBERON:0005692
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005692 ! finger 2 mesenchyme
relationship: develops_from UBERON:0010576 ! finger 2 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005692 ! finger 2 mesenchyme
[Term]
id: UBERON:0010677
name: finger 3 phalanx cartilage condensation
xref: EMAPA:18076
is_a: UBERON:0005693 ! finger 3 mesenchyme
is_a: UBERON:0010686 ! finger phalanx cartilage condensation
relationship: part_of UBERON:0005693
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005693 ! finger 3 mesenchyme
relationship: develops_from UBERON:0010577 ! finger 3 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005693 ! finger 3 mesenchyme
[Term]
id: UBERON:0010678
name: finger 4 phalanx cartilage condensation
xref: EMAPA:18081
is_a: UBERON:0005694 ! finger 4 mesenchyme
is_a: UBERON:0010686 ! finger phalanx cartilage condensation
relationship: part_of UBERON:0005694
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005694 ! finger 4 mesenchyme
relationship: develops_from UBERON:0010578 ! finger 4 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005694 ! finger 4 mesenchyme
[Term]
id: UBERON:0010679
name: finger 5 phalanx cartilage condensation
xref: EMAPA:18086
is_a: UBERON:0005695 ! finger 5 mesenchyme
is_a: UBERON:0010686 ! finger phalanx cartilage condensation
relationship: part_of UBERON:0005695
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005695 ! finger 5 mesenchyme
relationship: develops_from UBERON:0010579 ! finger 5 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005695 ! finger 5 mesenchyme
[Term]
id: UBERON:0010680
name: toe 1 phalanx cartilage condensation
xref: EMAPA:18107
is_a: UBERON:0010562 ! toe 1 mesenchyme
is_a: UBERON:0010685 ! toe phalanx cartilage condensation
relationship: part_of UBERON:0010562
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0010562 ! toe 1 mesenchyme
relationship: develops_from UBERON:0010580 ! toe 1 phalanx pre-cartilage condensation
relationship: part_of UBERON:0010562 ! toe 1 mesenchyme
[Term]
id: UBERON:0010681
name: toe 2 phalanx cartilage condensation
xref: EMAPA:18112
is_a: UBERON:0005696 ! toe 2 mesenchyme
is_a: UBERON:0010685 ! toe phalanx cartilage condensation
relationship: part_of UBERON:0005696
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005696 ! toe 2 mesenchyme
relationship: develops_from UBERON:0010581 ! toe 2 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005696 ! toe 2 mesenchyme
[Term]
id: UBERON:0010682
name: toe 3 phalanx cartilage condensation
xref: EMAPA:18117
is_a: UBERON:0005697 ! toe 3 mesenchyme
is_a: UBERON:0010685 ! toe phalanx cartilage condensation
relationship: part_of UBERON:0005697
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005697 ! toe 3 mesenchyme
relationship: develops_from UBERON:0010582 ! toe 3 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005697 ! toe 3 mesenchyme
[Term]
id: UBERON:0010683
name: toe 4 phalanx cartilage condensation
xref: EMAPA:18122
is_a: UBERON:0005698 ! toe 4 mesenchyme
is_a: UBERON:0010685 ! toe phalanx cartilage condensation
relationship: part_of UBERON:0005698
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005698 ! toe 4 mesenchyme
relationship: develops_from UBERON:0010583 ! toe 4 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005698 ! toe 4 mesenchyme
[Term]
id: UBERON:0010684
name: toe 5 phalanx cartilage condensation
xref: EMAPA:18127
is_a: UBERON:0005699 ! toe 5 mesenchyme
is_a: UBERON:0010685 ! toe phalanx cartilage condensation
relationship: part_of UBERON:0005699
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005699 ! toe 5 mesenchyme
relationship: develops_from UBERON:0010584 ! toe 5 phalanx pre-cartilage condensation
relationship: part_of UBERON:0005699 ! toe 5 mesenchyme
[Term]
id: UBERON:0010685
name: toe phalanx cartilage condensation
is_a: UBERON:0005255 ! foot digit mesenchyme
is_a: UBERON:0010701 ! phalanx cartilage condensation
relationship: part_of UBERON:0005255
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005255 ! foot digit mesenchyme
relationship: develops_from UBERON:0010585 ! toe phalanx pre-cartilage condensation
relationship: part_of UBERON:0005255 ! foot digit mesenchyme
[Term]
id: UBERON:0010686
name: finger phalanx cartilage condensation
is_a: UBERON:0005257 ! hand digit mesenchyme
is_a: UBERON:0010701 ! phalanx cartilage condensation
relationship: part_of UBERON:0005257
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0005257 ! hand digit mesenchyme
relationship: develops_from UBERON:0010586 ! finger phalanx pre-cartilage condensation
relationship: part_of UBERON:0005257 ! hand digit mesenchyme
[Term]
id: UBERON:0010687
name: toe metatarsal pre-cartilage condensation
synonym: "metatarsal bone pre-cartilage condensation" EXACT []
synonym: "metatarsus pre-cartilage condensation" EXACT [VHOG:0000948]
xref: VHOG:0000948
is_a: UBERON:0010585 ! toe phalanx pre-cartilage condensation
relationship: part_of UBERON:0005255 ! foot digit mesenchyme
[Term]
id: UBERON:0010688
name: skeleton of anterior acropodium
def: "Endochondral acropodial bones forming the distalmost section of the anterior autopodium." [VSAO:0005029, VSAO:NI]
synonym: "all phalanges in forelimb autopod" EXACT []
synonym: "anterior acropodium" RELATED [VSAO:0005029, VSAO:NI]
synonym: "fore acropodium skeleton" EXACT []
synonym: "hand digit skeleton" EXACT []
synonym: "manual phalanges" EXACT PLURAL [VSAO:0005029, VSAO:NI]
synonym: "phalanges of hand" EXACT [FMA:71337]
synonym: "set of phalanges of hand" EXACT [FMA:71337]
xref: FMA:71337
xref: VSAO:0005029
is_a: UBERON:0010543 ! skeleton of acropodium
relationship: part_of UBERON:0002398
intersection_of: UBERON:0010543 ! skeleton of acropodium
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0001442 ! skeleton of hand
relationship: part_of UBERON:0002398 ! hand
relationship: proximally_connected_to UBERON:0010544 ! metacarpus skeleton
[Term]
id: UBERON:0010690
name: finger 1 epithelium
xref: EHDAA2:0000512
xref: EMAPA:17430
is_a: UBERON:0005227 ! hand digit epithelium
relationship: part_of UBERON:0001463
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001463 ! hand digit 1
relationship: part_of UBERON:0001463 ! hand digit 1
[Term]
id: UBERON:0010693
name: toe 1 epithelium
xref: EHDAA2:0002038
xref: EMAPA:17461
is_a: UBERON:0005226 ! foot digit epithelium
relationship: part_of UBERON:0003631
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003631 ! foot digit 1
relationship: part_of UBERON:0003631 ! foot digit 1
[Term]
id: UBERON:0010695
name: mesenchyme of tarsal region
def: "Mesenchyme of the carpal region that conributes to the tarsal skeleton." [UBERON:cjm]
xref: EMAPA:18500
is_a: UBERON:0003860 ! hindlimb mesenchyme
relationship: part_of UBERON:0004454
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0004454 ! tarsal region
relationship: part_of UBERON:0004454 ! tarsal region
[Term]
id: UBERON:0010696
name: skeleton of posterior acropodium
synonym: "all phalanges in hindlimb autopod" EXACT []
synonym: "foot digit skeleton" EXACT []
synonym: "hind acropodium skeleton" EXACT []
synonym: "pedal phalanges" EXACT [VSAO:0005030, VSAO:NI]
synonym: "phalanges of foot" EXACT [FMA:78512]
synonym: "posterior acropodium" RELATED [VSAO:0005030, VSAO:NI]
synonym: "set of phalanges of foot" EXACT [FMA:78512]
xref: FMA:78512
xref: VSAO:0005030
is_a: UBERON:0010543 ! skeleton of acropodium
relationship: part_of UBERON:0002387
intersection_of: UBERON:0010543 ! skeleton of acropodium
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0001445 ! skeleton of foot
relationship: part_of UBERON:0002387 ! foot
relationship: proximally_connected_to UBERON:0010545 ! metatarsus skeleton
[Term]
id: UBERON:0010697
name: toe metatarsal cartilage condensation
is_a: UBERON:0010685 ! toe phalanx cartilage condensation
relationship: part_of UBERON:0005255 ! foot digit mesenchyme
[Term]
id: UBERON:0010698
name: finger metacarpus pre-cartilage condensation
synonym: "metacarpal bone pre-cartilage condensation" EXACT [VHOG:0000953]
synonym: "metacarpus pre-cartilage condensation" EXACT [VHOG:0000953]
xref: VHOG:0000953
is_a: UBERON:0010586 ! finger phalanx pre-cartilage condensation
relationship: part_of UBERON:0005257 ! hand digit mesenchyme
[Term]
id: UBERON:0010699
name: finger metacarpus cartilage condensation
is_a: UBERON:0010686 ! finger phalanx cartilage condensation
relationship: develops_from UBERON:0010698 ! finger metacarpus pre-cartilage condensation
relationship: part_of UBERON:0005257 ! hand digit mesenchyme
[Term]
id: UBERON:0010700
name: phalanx pre-cartilage condensation
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010702 ! digit mesenchyme
relationship: part_of UBERON:0010702
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0010702 ! digit mesenchyme
relationship: part_of UBERON:0006717 ! skeleton of autopod
relationship: part_of UBERON:0010702 ! digit mesenchyme
[Term]
id: UBERON:0010701
name: phalanx cartilage condensation
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0010702 ! digit mesenchyme
relationship: part_of UBERON:0010702
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0010702 ! digit mesenchyme
relationship: develops_from UBERON:0010700 ! phalanx pre-cartilage condensation
relationship: part_of UBERON:0006717 ! skeleton of autopod
relationship: part_of UBERON:0010702 ! digit mesenchyme
[Term]
id: UBERON:0010702
name: digit mesenchyme
is_a: UBERON:0009749 ! limb mesenchyme
relationship: part_of UBERON:0002544
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002544 ! digit
relationship: part_of UBERON:0002544 ! digit
[Term]
id: UBERON:0010703
name: forelimb zeugopod skeleton
def: "The collection of all skeletal elements in an forelimb zeugopod region." [UBERON:cjm]
synonym: "anterior zeugopodium" RELATED [VSAO:0005011, VSAO:NI]
synonym: "anterior zeugopodium skeleton" EXACT [VSAO:0005011, VSAO:NI]
synonym: "fore epipodium" RELATED [AAO:0000200]
synonym: "fore epipodium skeleton" EXACT []
synonym: "forearm skeleton" EXACT [FMA:71199]
synonym: "forelimb epipodium" RELATED [VSAO:0005011, VSAO:NI]
synonym: "forelimb epipodium skeleton" RELATED []
synonym: "skeleton of forearm" EXACT [FMA:71199]
xref: AAO:0000200
xref: FMA:71199
xref: VSAO:0005011
property_value: UBPROP:0000001 "Segment of the forearm corresponding to the radius and ulna.[AAO]" xsd:string
is_a: UBERON:0011584 ! zeugopodial skeleton
relationship: part_of UBERON:0002386
relationship: subdivision_of UBERON:0002386
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
intersection_of: subdivision_of UBERON:0002386 ! forelimb zeugopod
relationship: part_of UBERON:0001440 ! forelimb skeleton
relationship: part_of UBERON:0002386 ! forelimb zeugopod
relationship: proximally_connected_to UBERON:0000976 ! humerus
relationship: subdivision_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0010704
name: parenchyma of quadrate lobe of liver
synonym: "liver right quadrate lobe parenchyma" EXACT [EHDAA2:0001014]
synonym: "parenchyma of quadrate lobe" EXACT [EMAPA:18320]
xref: EHDAA2:0001014
xref: EMAPA:18320
xref: FMA:71676
is_a: UBERON:0005221 ! liver right lobe parenchyma
relationship: part_of UBERON:0001116
intersection_of: UBERON:0001280 ! liver parenchyma
intersection_of: part_of UBERON:0001116 ! quadrate lobe of liver
relationship: part_of UBERON:0001116 ! quadrate lobe of liver
[Term]
id: UBERON:0010706
name: parenchyma of caudate lobe of liver
synonym: "liver right caudate lobe parenchyma" EXACT [EHDAA2:0001007]
synonym: "parenchyma of caudate lobe" EXACT [EMAPA:18315]
xref: EHDAA2:0001007
xref: EMAPA:18315
xref: FMA:71659
is_a: UBERON:0005221 ! liver right lobe parenchyma
is_a: UBERON:0005222 ! liver left lobe parenchyma
relationship: part_of UBERON:0001117
intersection_of: UBERON:0001280 ! liver parenchyma
intersection_of: part_of UBERON:0001117 ! caudate lobe of liver
relationship: part_of UBERON:0001117 ! caudate lobe of liver
[Term]
id: UBERON:0010707
name: appendage girdle complex
def: "An organism subdivision that includes both an appendage and its accociated girdle region. Note that this includes both the skeletal elements and associated tissues (integument, muscle, etc)." [UBERON:cjm, UBERONREF:0000003]
comment: It is still called a complex when one of the two parts is missing (?) There are fossil fishes with only an outgrowth (no record of a girdle), including thelodonts (which have a suprabranchial fin) as well as some anaspids which have a distinctive 'paired fin' (with differing published assertions on whether it's homologous to a pec fin or pelvic fin or both or neither). There are many fishes and other vertebrates with only a girdle and no outgrowth.[VSAO] AO notes: note that the FMA uses the term 'limb' to refer to the entire appendage complex (free limb plus girdle region)
synonym: "appendage complex" EXACT [UBERON:cjm]
synonym: "appendage-girdle complex" EXACT [UBERON:cjm]
synonym: "girdle plus limb or fin" EXACT [UBERON:cjm]
synonym: "limb" RELATED INCONSISTENT [FMA:7182]
xref: FMA:7182
xref: VSAO:0000214
property_value: UBPROP:0000001 "Anatomical group that consists of the soft and skeletal tissues of the appendicular region of the body and the appendage proper.[VSAO]" xsd:string
is_a: UBERON:0000475 ! organism subdivision
created_by: haendel
creation_date: 2012-04-23T10:46:51Z
[Term]
id: UBERON:0010708
name: pectoral complex
def: "Appendage girdle complex that when present, encompasses the pectoral appendicular skeleton and the pectoral girdle." [VSAO:0000213]
comment: AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region)
synonym: "pectoral girdle plus anterior limb or fin" EXACT [UBERON:cjm]
synonym: "pectoral girdle plus pectoral limb or fin" EXACT [UBERON:cjm]
synonym: "upper limb" RELATED INCONSISTENT [FMA:7183]
xref: FMA:7183
xref: VSAO:0000213
property_value: UBPROP:0000001 "Appendage girdle complex that when present, encompasses the pectoral appendage and half of the pectoral girdle.[VSAO]" xsd:string
is_a: UBERON:0010707 ! appendage girdle complex
relationship: has_part UBERON:0001421
intersection_of: UBERON:0010707 ! appendage girdle complex
intersection_of: has_part UBERON:0001421 ! pectoral girdle region
relationship: has_part UBERON:0001421 ! pectoral girdle region
relationship: part_of UBERON:0000153 {gci_relation="part_of", gci_filler="NCBITaxon:32523"} ! anterior region of body
[Term]
id: UBERON:0010709
name: pelvic complex
def: "Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic girdle." [VSAO:0000215]
comment: AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region). Note the MA class 'hindlimb' may also belong here
synonym: "lower limb" RELATED INCONSISTENT [FMA:7184]
synonym: "pelvic girdle plus pelvic limb or fin" EXACT [UBERON:cjm]
synonym: "pelvic girdle plus posterior limb or fin" EXACT [UBERON:cjm]
xref: FMA:7184
xref: SCTID:416631005
xref: VSAO:0000215
property_value: UBPROP:0000001 "Appendage girdle complex that when present, encompasses the pelvic appendage and the pelvic girdle.[VSAO]" xsd:string
is_a: UBERON:0010707 ! appendage girdle complex
relationship: has_part UBERON:0001271
intersection_of: UBERON:0010707 ! appendage girdle complex
intersection_of: has_part UBERON:0001271 ! pelvic girdle region
relationship: has_part UBERON:0001271 ! pelvic girdle region
relationship: part_of UBERON:0000154 {gci_relation="part_of", gci_filler="NCBITaxon:32523"} ! posterior region of body
[Term]
id: UBERON:0010710
name: pectoral fin skeleton
def: "Paired fin skeleton that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid." [TAO:wd]
synonym: "forefin skeleton" EXACT [TAO:0000943]
xref: EFO:0003594
xref: TAO:0000943
xref: VSAO:0000153
xref: ZFA:0000943
is_a: UBERON:0007272 ! pectoral appendage skeleton
is_a: UBERON:0010713 ! paired fin skeleton
relationship: subdivision_of UBERON:0000151
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0000151 ! pectoral fin
relationship: part_of UBERON:0000151 {source="TAO"} ! pectoral fin
relationship: subdivision_of UBERON:0000151 ! pectoral fin
[Term]
id: UBERON:0010711
name: pelvic fin skeleton
def: "Paired fin skeleton located in the abdominal position that consists of supporting endochondral radialsB and dermal fin rays or lepidotrichia." [TAO:0001387]
comment: AO Notes: the girdle is part of the pelvic fin skeleton in ZFA - needs resolved
xref: TAO:0001387
xref: VSAO:0000154
xref: ZFA:0001387
is_a: UBERON:0007273 ! pelvic appendage skeleton
is_a: UBERON:0010713 ! paired fin skeleton
relationship: subdivision_of UBERON:0000152
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0000152 ! pelvic fin
relationship: part_of UBERON:0000152 {source="TAO"} ! pelvic fin
relationship: subdivision_of UBERON:0000152 ! pelvic fin
[Term]
id: UBERON:0010712
name: limb skeleton subdivision
def: "Skeletal subdivision that is a segment of the limb skeleton." [VSAO:0005018, VSAO:NI]
comment: Editor notes - note the distinction between this and skeleton of limb
xref: VSAO:0005018
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: part_of UBERON:0002101
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002091 {source="VSAO"} ! entire appendicular skeleton
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0010713
name: paired fin skeleton
def: "The collection of all skeletal elements in a single paired fin." [UBERON:cjm]
xref: TAO:0000027
xref: VSAO:0000169
xref: ZFA:0000027
property_value: UBPROP:0000001 "Skeletal system that consists of the paired fins (pectoral or pelvic fins).[TAO]" xsd:string
property_value: UBPROP:0000001 "Skeletal system that consists of the paired fins (pectoral or pelvic fins).[VSAO]" xsd:string
is_a: UBERON:0011582 ! skeleton of limb/fin
relationship: subdivision_of UBERON:0002534
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002534 ! paired fin
relationship: part_of UBERON:0002534 ! paired fin
relationship: subdivision_of UBERON:0002534 ! paired fin
[Term]
id: UBERON:0010714
name: iliac cartilage condensation
xref: EHDAA2:0000808
xref: EMAPA:18347
xref: VHOG:0001126
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
is_a: UBERON:0010377 ! mesenchyme from somatopleure
relationship: develops_from UBERON:0006247 {source="EHDAA2"} ! iliac pre-cartilage condensation
relationship: part_of UBERON:0007832 {source="EHDAA2"} ! skeleton of pelvic girdle
[Term]
id: UBERON:0010718
name: pubic cartilage condensation
xref: EHDAA2:0001573
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
is_a: UBERON:0010377 ! mesenchyme from somatopleure
relationship: develops_from UBERON:0006285 {source="EHDAA2"} ! pubic pre-cartilage condensation
relationship: part_of UBERON:0007832 {source="EHDAA2"} ! skeleton of pelvic girdle
[Term]
id: UBERON:0010719
name: girdle skeleton
def: "The subdivision of the skeleton of either the pectoral or pelvic girdle." [UBERON:cjm]
synonym: "skeleton of girdle" EXACT []
xref: AAO:0010686
xref: VSAO:0000302
property_value: UBPROP:0000001 "Skeletal subdivision that is part of the appendage girdle region.[VSAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: part_of subdivision of skeleton (UBERON:0010912)[VSAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: proximally_connected_to subdivision of skeleton (UBERON:0010912)[VSAO]" xsd:string
property_value: UBPROP:0000002 "relationship type change: subclass skeletal subdivision (VSAO:0000042) CHANGED TO: transitively_connected_to subdivision of skeleton (UBERON:0010912)[VSAO]" xsd:string
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: subdivision_of UBERON:0007823
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0007823 ! appendage girdle region
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
relationship: part_of UBERON:0007823 ! appendage girdle region
relationship: proximally_connected_to UBERON:0005944 ! axial skeleton
relationship: subdivision_of UBERON:0007823 ! appendage girdle region
[Term]
id: UBERON:0010720
name: hindlimb zeugopod skeleton
def: "The collection of all skeletal elements in an hindlimb zeugopod region." [UBERON:cjm]
synonym: "hind epipodium" RELATED [AAO:0000216]
synonym: "hindlimb epipodium" RELATED [VSAO:0005014, VSAO:NI]
synonym: "posterior zeugopodium" RELATED INCONSISTENT [VSAO:0005014]
synonym: "posterior zeugopodium skeleton" EXACT []
xref: AAO:0000216
xref: VSAO:0005014
property_value: UBPROP:0000001 "Segment of the leg corresponding to the tibia and fibula.[AAO]" xsd:string
is_a: UBERON:0011584 ! zeugopodial skeleton
relationship: subdivision_of UBERON:0003823
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
relationship: proximally_connected_to UBERON:0000981 ! femur
relationship: subdivision_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0010721
name: distal tarsal bone
def: "There are three cuneiform bones in the human foot: the medial cuneiform the intermediate cuneiform also known as the middle the lateral cuneiform. They are located between the navicular bone and the first, second and third metatarsal bones and are medial to the cuboid bone[WP, unvetted, human specific]." [Wikipedia:Cuneiform_%28anatomy%29]
synonym: "cuneiform bone" EXACT [FMA:24517]
synonym: "distal tarsal" EXACT [AAO:0000914]
synonym: "distal tarsal bone" EXACT []
synonym: "os cuneiform" EXACT []
xref: AAO:0000914
xref: FMA:24517
xref: http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray268.png
xref: ncithesaurus:Cuneiform_Bone_of_the_Foot
xref: SCTID:182102002
property_value: UBPROP:0000001 "Series of elements that articulate with the metatarsals.[AAO]" xsd:string
is_a: UBERON:0001447 ! tarsal bone
relationship: distally_connected_to UBERON:0001448 ! metatarsal bone
relationship: part_of UBERON:0009879 ! tarsal skeleton
[Term]
id: UBERON:0010722
name: accessory bone
def: "A bone which does not occur frequently in the body but is still present in a significantly large number of organisms" [Wikipedia:Accessory_bone]
is_a: UBERON:0001474 ! bone
[Term]
id: UBERON:0010723
name: vesalian bone
def: "an accessory bone located proximal to the base of the fifth metatarsal. Its prevalence has been reported to be from 0.1% to 1.0%. This bone is found within the peroneus brevis tendon and is considered to be asymptomatic in the majority of people" [PMID:16291851]
synonym: "os vesalianum pedis" EXACT []
xref: SCTID:182149003
is_a: UBERON:0001447 ! tarsal bone
is_a: UBERON:0010722 ! accessory bone
[Term]
id: UBERON:0010724
name: lateral tubercle of talus
def: "An accessory bone tubercle which if present lies posterior to the talus" [Wikipedia:Os_trigonum]
synonym: "accessory talus" EXACT [Wikipedia:Os_trigonum]
synonym: "os trigonum" EXACT [FMA:TA]
synonym: "os trigonum of talus" EXACT [FMA:33655]
synonym: "tuberculum laterale (talus)" EXACT [FMA:33655]
xref: FMA:33655
xref: SCTID:87573005
is_a: UBERON:0005813 {source="FMA"} ! tubercle
is_a: UBERON:0005899 ! foot bone
is_a: UBERON:0010722 ! accessory bone
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0010725
name: accessory navicular bone
def: "an accessory bone of the foot that occasionally develops abnormally in front of the ankle towards the inside of the foot. This bone may be present in approximately 2.5% of the general population and is usually asymptomatic" [Wikipedia:Accessory_navicular_bone]
xref: SCTID:118496000
is_a: UBERON:0005899 ! foot bone
is_a: UBERON:0010722 ! accessory bone
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0010726
name: os vesalianum manus
xref: http://www.anatomyatlases.org/AnatomicVariants/SkeletalSystem/Images/94.jpg
is_a: UBERON:0001435 ! carpal bone
is_a: UBERON:0010722 ! accessory bone
[Term]
id: UBERON:0010727
name: sutural bone
def: "A piece of bone that is located within a suture in the cranium." [Wikipedia:Wormian_bones]
synonym: "wormian bone" EXACT [FMA:59327]
xref: FMA:59327
xref: SCTID:272677004
is_a: UBERON:0004766 ! cranial bone
is_a: UBERON:0010428 {source="FMA"} ! flat bone
relationship: part_of UBERON:0003685 ! cranial suture
[Term]
id: UBERON:0010728
name: sphenoid lesser wing pre-cartilage condensation
xref: EHDAA2:0003449
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: part_of UBERON:0009191 {source="EHDAA2"} ! sphenoid bone pre-cartilage condensation
[Term]
id: UBERON:0010732
name: alisphenoid pre-cartilage condensation
synonym: "sphenoid greater wing pre-cartilage condensation" EXACT [EHDAA2:0003448]
xref: EHDAA2:0003448
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
is_a: UBERON:0006904 ! head mesenchyme from mesoderm
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: part_of UBERON:0009191 {source="EHDAA2"} ! sphenoid bone pre-cartilage condensation
[Term]
id: UBERON:0010733
name: alisphenoid cartilage condensation
synonym: "sphenoid greater wing cartilage condensation" EXACT [EHDAA2:0003450]
xref: EHDAA2:0003450
is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation
is_a: UBERON:0006904 ! head mesenchyme from mesoderm
is_a: UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: develops_from UBERON:0010732 {source="EHDAA2"} ! alisphenoid pre-cartilage condensation
relationship: part_of UBERON:0009193 {source="EHDAA2"} ! sphenoid bone cartilage condensation
[Term]
id: UBERON:0010737
name: distal tarsal bone 4
def: "Endochondral tarsal bone articulating with centralia and metatarsal 4." [VSAO:0005055]
comment: We need to restrict the logical definition such that it is *only* connecting to metatarsal 4
synonym: "cuboideum" RELATED [VSAO:0005055]
synonym: "distal tarsal 4" EXACT [VSAO:0005055]
synonym: "tarsal 4" EXACT [AAO:0000932]
xref: AAO:0000932
xref: VSAO:0005055
property_value: UBPROP:0000001 "Small element that articulates anteriorly with metatarsal IV. It may be absent in some taxa.[AAO]" xsd:string
is_a: UBERON:0010721 ! distal tarsal bone
relationship: distally_connected_to UBERON:0003653 ! metatarsal bone of digit 4
relationship: proximally_connected_to UBERON:0001451 ! navicular bone of foot
[Term]
id: UBERON:0010738
name: distal tarsal bone 5
def: "Endochondral tarsal bone articulating with centralia and metatarsal 5." [VSAO:0005056]
comment: We need to restrict the logical definition such that it is *only* connecting to metatarsal 5
synonym: "cuboideum" RELATED [VSAO:0005056]
synonym: "distal tarsal 5" EXACT [VSAO:0005056]
synonym: "tarsal 5" EXACT [AAO:0000933]
xref: AAO:0000933
xref: VSAO:0005056
property_value: UBPROP:0000001 "Small element that articulates anteriorly with metatarsal V. It may be absent in some taxa.[AAO]" xsd:string
is_a: UBERON:0010721 ! distal tarsal bone
relationship: distally_connected_to UBERON:0003654 ! metatarsal bone of digit 5
relationship: proximally_connected_to UBERON:0001451 ! navicular bone of foot
[Term]
id: UBERON:0010739
name: distal carpal bone 5
def: "endochondral carpal bone similar to distal carpal 4, but lost in most reptiles and mammals." [VSAO:0005047]
comment: Taxon notes: lost in most reptiles and mammals[VSAO]. Small element that articulates anteriorly with metacarpal IV(V). It may be fused to carpal 4(3), 5(4), the ulnare, radiale, or other elements[AAO]
synonym: "carpal 5" RELATED [AAO:0000851]
synonym: "distal carpal 5" EXACT [VSAO:0005047]
synonym: "hamate" RELATED [VSAO:0005047]
synonym: "os hamatum" RELATED [VSAO:0005047]
synonym: "unciform" RELATED [VSAO:0005047]
synonym: "uncinate" RELATED [VSAO:0005047]
xref: AAO:0000851
xref: VSAO:0005047
property_value: UBPROP:0000001 "Small element that articulates anteriorly with metacarpal IV(V). It may be fused to carpal 4(3), 5(4), the ulnare, radiale, or other elements.[AAO]" xsd:string
is_a: UBERON:0001481 ! distal carpal bone
[Term]
id: UBERON:0010740
name: bone of appendage girdle complex
def: "A bone that is part of an appendage girdle complex (i.e. any bone in a limb, fin or girdle)." [UBERON:cjm, UBERONREF:0000003]
synonym: "bone of extended limb/fin region" RELATED [UBERON:cjm, UBERONREF:0000003]
synonym: "limb bone" RELATED [MA:0000688, UBERONREF:0000003]
xref: MA:0000688
is_a: UBERON:0001474 ! bone
relationship: part_of UBERON:0010707
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0010707 ! appendage girdle complex
relationship: part_of UBERON:0002091 {notes="UBERONREF:0000003"} ! entire appendicular skeleton
relationship: part_of UBERON:0010707 ! appendage girdle complex
[Term]
id: UBERON:0010741
name: bone of pectoral complex
def: "A bone that is part of a pectoral complex. Examples: scapula, hand phalanx, any carpal bone, any bone of the pectoral fin." [UBERON:cjm, UBERONREF:0000003]
comment: AO notes - note that the MA class includes girdle parts so it belongs here; Editor notes: considering adding pectoral and pelvic complex skeleton classes
synonym: "bone of forelimb or pectoral fin or pectoral girdle" RELATED [UBERON:cjm, UBERONREF:0000003]
synonym: "forelimb bone" RELATED [MA:0000612, UBERONREF:0000003]
synonym: "wing bone" NARROW SENSU [UBERONREF:0000003]
xref: MA:0000612
is_a: UBERON:0010740 ! bone of appendage girdle complex
relationship: part_of UBERON:0010708
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0010708 ! pectoral complex
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
relationship: part_of UBERON:0010708 ! pectoral complex
[Term]
id: UBERON:0010742
name: bone of pelvic complex
def: "A bone that is part of a pelvic complex. Examples: pubis, ischium, fot phalanx, any tarsal bone, any bone of the pelvic fin or girdle." [UBERON:cjm, UBERONREF:0000003]
comment: Note that the MA class called 'hindlimb bone' belongs here, as it includes bones in the pelvic girdle
synonym: "hindlimb bone" RELATED [MA:0000660, UBERONREF:0000003]
xref: MA:0000660
is_a: UBERON:0010740 {source="MA"} ! bone of appendage girdle complex
relationship: part_of UBERON:0010709
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0010709 ! pelvic complex
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
relationship: part_of UBERON:0010709 ! pelvic complex
[Term]
id: UBERON:0010743
name: meningeal cluster
def: "The collection of all meningeal layers that line a central nervous system." [UBERON:cjm]
comment: In some primitive organisms, the meningeal cluster includes only the primitive meninx
synonym: "cluster of meninges" EXACT [FMA:231572]
synonym: "meninges" EXACT [FMA:231572]
xref: EHDAA2:0004661
xref: FMA:231572
xref: SCTID:362879001
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0010744
name: sacral vertebra pre-cartilage condensation
synonym: "sacral vertebral pre-cartilage condensation group" EXACT [EHDAA2:0001774]
xref: EHDAA2:0001774
xref: EMAPA:17677
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0011095 ! vertebra pre-cartilage condensation
relationship: develops_from UBERON:0003089 {evidence_from="Aves", notes="Christ et al 200", source="PMID:21455939"} ! sclerotome
relationship: part_of UBERON:0006075 {source="EHDAA2"} ! sacral region of vertebral column
[Term]
id: UBERON:0010745
name: sacral vertebra cartilage condensation
synonym: "sacral vertebral cartilage condensation" EXACT []
synonym: "sacral vertebral cartilage condensation group" EXACT [EHDAA2:0001773]
xref: EHDAA2:0001773
xref: EMAPA:18009
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005174 ! back organ
is_a: UBERON:0005179 ! pelvis organ
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0011094 ! vertebra cartilaginous condensation
relationship: develops_from UBERON:0010744 {source="EHDAA2"} ! sacral vertebra pre-cartilage condensation
relationship: part_of UBERON:0006075 {source="EHDAA2"} ! sacral region of vertebral column
[Term]
id: UBERON:0010746
name: wing of ilium
def: "The wing of ilium (or ala) is the large expanded portion which bounds the greater pelvis laterally. It presents for examination two surfacesban external and an internalba crest, and two borders - an anterior and a posterior." [Wikipedia:Wing_of_ilium]
synonym: "a. ossis ilii" RELATED LATIN [Wikipedia:Wing_of_ilium]
synonym: "ala of ilium" EXACT [FMA:42826]
synonym: "ala ossis ilii" EXACT [FMA:TA]
synonym: "ala ossis ilii" RELATED [Wikipedia:Wing_of_ilium]
synonym: "ilium ala" EXACT [FMA:42826]
xref: FMA:42826
xref: http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray235.png
xref: SCTID:182024000
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0001273 ! ilium
[Term]
id: UBERON:0010747
name: body of ilium
def: "The body of ilium enters into the formation of the acetabulum, of which it forms rather less than two-fifths. Its external surface is partly articular, partly non-articular; the articular segment forms part of the lunate surface of the acetabulum, the non-articular portion contributes to the acetabular fossa. The internal surface of the body is part of the wall of the lesser pelvis and gives origin to some fibers of the Obturator internus. Below, it is continuous with the pelvic surfaces of the ischium and pubis, only a faint line indicating the place of union." [Wikipedia:Body_of_ilium]
synonym: "corpus ossis ilii" RELATED LATIN [Wikipedia:Body_of_ilium]
synonym: "ilium body" EXACT [FMA:42825]
xref: FMA:42825
xref: SCTID:292524005
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ
relationship: part_of UBERON:0001273 ! ilium
[Term]
id: UBERON:0010748
name: lymph node follicle
synonym: "follicle of lymph node" EXACT []
xref: MA:0000742
is_a: UBERON:0000444 ! lymphoid follicle
relationship: part_of UBERON:0000029
intersection_of: UBERON:0000444 ! lymphoid follicle
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0002006 {source="MP-def", notes="issues/7"} ! cortex of lymph node
[Term]
id: UBERON:0010749
name: middle pharyngeal constrictor
def: "The middle pharyngeal constrictor is a fanshaped muscle, smaller than the Inferior pharyngeal constrictor muscle." [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "constrictor medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "constrictor pharyngis medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "constrictores pharyngis medius" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "hyopharyngeus" RELATED []
synonym: "middle constrictor" EXACT [FMA:46622]
synonym: "middle constrictor" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "middle constrictor muscle" RELATED []
synonym: "middle constrictor of pharynx" EXACT [FMA:46622]
synonym: "middle constrictor pharyngeus" EXACT [FMA:46622]
synonym: "middle pharyngeal constrictor" RELATED [Wikipedia:Middle_pharyngeal_constrictor_muscle]
synonym: "musculus constrictor pharyngis medius" EXACT [FMA:TA]
synonym: "musculus constrictor pharyngis medius" RELATED LATIN [Wikipedia:Middle_pharyngeal_constrictor_muscle]
xref: FMA:46622
xref: http://upload.wikimedia.org/wikipedia/commons/8/8f/Musculusconstrictorpharyngismedius.png
xref: ncithesaurus:Middle_Constrictor_Muscle
xref: SCTID:244802003
property_value: UBPROP:0000001 "The middle constrictor is a pharyngeal arches 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus of Vagus and attaches to the hyoid apparatus and the midline raphe.[FEED]" xsd:string
is_a: UBERON:0001569 {source="FMA"} ! constrictor muscle of pharynx
relationship: has_muscle_origin UBERON:0001685 {source="dbpedia"} ! hyoid bone
[Term]
id: UBERON:0010750
name: prefrontal bone
def: "a bone separating the lacrimal and frontal bones in many tetrapod skulls" [Wikipedia:Prefrontal_bone]
comment: Taxon notes: It first evolved in the sarcopterygian clade Rhipidistia, which includes lungfish and the Tetrapodomorpha. The prefrontal is found in most modern and extinct lungfish, amphibians and reptiles. It is very small, fused to the frontals or lost in many groups of coelurosaurian theropod dinosaurs and is completely absent in their modern descendants, the birds. The prefrontal was also lost in early mammaliaforms and so is not present in modern mammals either[WP]
synonym: "prefrontal" BROAD [AAO:0000460]
xref: AAO:0000460
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Dromaeosaurus_skull_en.svg/180px-Dromaeosaurus_skull_en.svg.png
property_value: "dubious_for_taxon" NCBITaxon:9606
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0008907 {source="Kardong"} ! dermal bone
relationship: adjacent_to UBERON:0000209 ! tetrapod frontal bone
relationship: adjacent_to UBERON:0001680 ! lacrimal bone
relationship: overlaps UBERON:0001697 {source="Kardong"} ! orbital region
relationship: part_of UBERON:0003113 {source="Kardong", notes="orbital series"} ! dermatocranium
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0010751
name: squamous part of temporal bone primordium
synonym: "squamosal bone primordium" EXACT []
xref: EHDAA2:0001907
xref: EHDAA:9536
is_a: UBERON:0001048 ! primordium
relationship: develops_from UBERON:0007213 ! mesenchyme derived from head neural crest
relationship: part_of UBERON:0004339 {source="PMID:11523816", source="EHDAA2"} ! vault of skull
[Term]
id: UBERON:0010752
name: exoccipital cartilage condensation
xref: EMAPA:18339
is_a: UBERON:0005863 ! cartilaginous condensation
relationship: develops_from UBERON:0006228 ! exoccipital pre-cartilage condensation
relationship: develops_into UBERON:0001693 ! exoccipital bone
relationship: part_of UBERON:0002241 {source="EMAPA"} ! chondrocranium
[Term]
id: UBERON:0010753
name: lymph node secondary follicle
def: "A secondary follicle that is located in a lymph node" [CL:tm]
xref: MA:0000744
is_a: UBERON:0001745 ! secondary nodular lymphoid tissue
is_a: UBERON:0010748 {source="MA"} ! lymph node follicle
relationship: part_of UBERON:0000029
intersection_of: UBERON:0001745 ! secondary nodular lymphoid tissue
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: develops_from UBERON:0010395 ! lymph node primary follicle
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0010754
name: germinal center
def: "A collection of activated B cells at the center of a secondary follicle, formed after B cells become activated and migrate to the center." [CL:tm, UBERON:cjm, Wikipedia:Germinal_center]
comment: A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation.[GO]
synonym: "central zone of follice" EXACT [CL:tm]
synonym: "light zone of follicle" EXACT [CL:tm]
synonym: "lymhpoid nodule" RELATED [CL:tm]
synonym: "nodule" RELATED [CL:tm]
synonym: "reaction center of follicle" EXACT [CL:tm]
xref: BTO:0003671
xref: EV:0100051
xref: http://upload.wikimedia.org/wikipedia/commons/6/60/Germinal_center.svg
xref: MESH:A.10.549.250
xref: ncithesaurus:Germinal_Center
xref: SCTID:64626006
is_a: UBERON:0001744 ! lymphoid tissue
relationship: part_of UBERON:0001745 ! secondary nodular lymphoid tissue
[Term]
id: UBERON:0010755
name: secondary follicle corona
def: "The part of the secondary follicle that surrounds the germinal center." [CL:tm, UBERON:cjm]
comment: Editor's note: consider making terminology consistent amongst subclasses - see https://github.com/cmungall/uberon/issues/7
synonym: "B cell corona" RELATED []
synonym: "dark zone of follicle" EXACT [CL:tm]
synonym: "inactive zone of follicle" EXACT [CL:tm]
synonym: "mantle zone" RELATED []
synonym: "peripheral zone of follicle" EXACT [CL:tm]
xref: ncithesaurus:Mantle_Zone
is_a: UBERON:0001744 ! lymphoid tissue
relationship: part_of UBERON:0001745
relationship: surrounds UBERON:0010754
intersection_of: UBERON:0001744 ! lymphoid tissue
intersection_of: part_of UBERON:0001745 ! secondary nodular lymphoid tissue
intersection_of: surrounds UBERON:0010754 ! germinal center
relationship: part_of UBERON:0001745 ! secondary nodular lymphoid tissue
relationship: surrounds UBERON:0010754 ! germinal center
[Term]
id: UBERON:0010756
name: spleen follicular dendritic cell network
def: "the enmeshed group of antigen presenting cells with extensive dendritic processes in the spleen B cell follicle that present antigen to B cells during an immune response" [MP:0008473]
comment: The follicular dendritic cell network is often visualized by using the monoclonal antibody FDC-M2.
synonym: "FDC network" BROAD [MP:0008473]
synonym: "FDCN" BROAD [MP:0008473]
synonym: "spleen FDC network" EXACT [MP:0008473]
synonym: "splenic follicular dendritic cell network" EXACT [MP:0008473]
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001744 ! lymphoid tissue
relationship: part_of UBERON:0004042 ! spleen secondary B follicle
[Term]
id: UBERON:0010757
name: rib 8
comment: elements are to be defined spatially/topologically
subset: defined_by_ordinal_series
xref: FMA:8120
xref: MA:0001408
xref: ncithesaurus:Rib_8
xref: SCTID:244663007
property_value: "rib_number" "8" xsd:nonNegativeInteger
is_a: UBERON:0002228 ! rib
is_a: UBERON:0002238 {source="FMA", gci_filler="NCBITaxon:9606", gci_relation="part_of"} ! false rib
[Term]
id: UBERON:0010758
name: appendage segment
xref: FBbt:00007018
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000026 ! appendage
[Term]
id: UBERON:0010759
name: equine distal sesamoid
def: "lies on the palmar aspect of the coffin joint between the second phalanx and third phalanx. articulates closely with the distal phalanx, to which it is connected by the impar ligament of the navicular bone. The impar ligament is very strong and permits relatively little motion between the navicular bone and the distal phalanx." [Wikipedia:Equine_forelimb_anatomy#Distal_sesamoid, Wikipedia:Navicular_bone#Horse_anatomy]
synonym: "navicular bone" RELATED INCONSISTENT [Wikipedia:Equine_forelimb_anatomy#Distal_sesamoid]
xref: SCTID:370654009
is_a: UBERON:0001479 ! sesamoid bone
is_a: UBERON:0011141 ! appendicular ossicle
is_a: UBERON:0011250 ! autopod bone
relationship: part_of UBERON:0002470 ! autopod region
[Term]
id: UBERON:0010760
name: supraglenoid tubercle
def: "The supraglenoid tubercle is a region of the scapula to which the long head of the biceps brachii muscle attaches." [Wikipedia:Supraglenoid_tubercle]
synonym: "supraglenoid tuberosity" EXACT [FMA:23263]
synonym: "tuberculum supraglenoidale" RELATED LATIN [Wikipedia:Supraglenoid_tubercle]
xref: FMA:23263
xref: http://upload.wikimedia.org/wikipedia/commons/a/a6/Gray205_left_scapula_lateral_view.png
is_a: UBERON:0005813 {source="FMA"} ! tubercle
relationship: part_of UBERON:0006633 ! coracoid process of scapula
[Term]
id: UBERON:0010801
name: calcaneum pre-cartilage condensation
synonym: "calcaneous pre-cartilage condensation" EXACT []
xref: EMAPA:17736
is_a: UBERON:0005866 ! pre-cartilage condensation
is_a: UBERON:0010695 ! mesenchyme of tarsal region
relationship: part_of UBERON:0009879 ! tarsal skeleton
[Term]
id: UBERON:0010842
name: calcaneum cartilage condensation
synonym: "calcaneous cartilage condensation" EXACT []
xref: EMAPA:18143
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0010695 ! mesenchyme of tarsal region
relationship: develops_from UBERON:0010801 ! calcaneum pre-cartilage condensation
relationship: part_of UBERON:0009879 ! tarsal skeleton
[Term]
id: UBERON:0010843
name: clavicle cartilaginous condensation
comment: In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4]
xref: EMAPA:18342
is_a: UBERON:0005863 ! cartilaginous condensation
relationship: develops_into UBERON:0001105
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0001105 ! clavicle
relationship: develops_from UBERON:0010844 ! clavicle pre-cartilage condensation
relationship: develops_into UBERON:0001105 ! clavicle
relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle
[Term]
id: UBERON:0010844
name: clavicle pre-cartilage condensation
comment: In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal.[ISBN:978-0-12-319060-4]
xref: EMAPA:18026
is_a: UBERON:0005866 ! pre-cartilage condensation
relationship: develops_into UBERON:0001105
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0001105 ! clavicle
relationship: develops_into UBERON:0001105 ! clavicle
relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle
[Term]
id: UBERON:0010846
name: radius pre-cartilage condensation
comment: Editor notes: still to decide whether this is a distinct pre-cartilage condensation
xref: EHDAA2:0001586
is_a: UBERON:0003327 ! mesenchyme of forearm
is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation
relationship: develops_into UBERON:0001423
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0001423 ! radius bone
relationship: develops_from UBERON:0006287 {source="EHDAA2"} ! radius-ulna pre-cartilage condensation
relationship: develops_into UBERON:0001423 ! radius bone
relationship: part_of UBERON:0003327 {source="EHDAA2"} ! mesenchyme of forearm
relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton
[Term]
id: UBERON:0010847
name: ulna pre-cartilage condensation
xref: EHDAA2:0002100
xref: EHDAA:6226
is_a: UBERON:0003327 ! mesenchyme of forearm
is_a: UBERON:0010884 ! forelimb bone pre-cartilage condensation
relationship: develops_into UBERON:0001424
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0001424 ! ulna
relationship: develops_from UBERON:0006287 {source="EHDAA2"} ! radius-ulna pre-cartilage condensation
relationship: develops_into UBERON:0001424 ! ulna
relationship: part_of UBERON:0003327 {source="EHDAA2"} ! mesenchyme of forearm
relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton
[Term]
id: UBERON:0010848
name: radius-ulna cartilage condensation
comment: AO notes: note that this is not represented as a single unit in EHDAA2
synonym: "radio-ulna cartilage condensation" EXACT [EMAPA:17711]
xref: EMAPA:17711
is_a: UBERON:0003327 ! mesenchyme of forearm
is_a: UBERON:0005863 ! cartilaginous condensation
relationship: develops_from UBERON:0006287 ! radius-ulna pre-cartilage condensation
relationship: part_of UBERON:0003327 {source="EMAPA"} ! mesenchyme of forearm
relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton
[Term]
id: UBERON:0010849
name: tibia cartilaginous condensation
xref: EMAPA:18155
is_a: UBERON:0005259 ! lower leg mesenchyme
is_a: UBERON:0010885 ! hindlimb bone cartilaginous condensation
relationship: develops_into UBERON:0000979
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0000979 ! tibia
relationship: develops_from UBERON:0010850 ! tibia pre-cartilage condensation
relationship: develops_into UBERON:0000979 ! tibia
relationship: part_of UBERON:0005259 {source="EMAPA"} ! lower leg mesenchyme
relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton
[Term]
id: UBERON:0010850
name: tibia pre-cartilage condensation
xref: EHDAA2:0002036
is_a: UBERON:0005259 ! lower leg mesenchyme
is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation
relationship: develops_into UBERON:0000979
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0000979 ! tibia
relationship: develops_into UBERON:0000979 ! tibia
relationship: part_of UBERON:0005259 {source="EHDAA2"} ! lower leg mesenchyme
relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton
[Term]
id: UBERON:0010851
name: fibula cartilaginous condensation
synonym: "fibulal cartilage condensation" EXACT [EMAPA:18154]
synonym: "fibular cartilage condensation" EXACT [EMAPA:18154]
xref: EMAPA:18154
is_a: UBERON:0005259 ! lower leg mesenchyme
is_a: UBERON:0010885 ! hindlimb bone cartilaginous condensation
relationship: develops_into UBERON:0001446
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0001446 ! fibula
relationship: develops_from UBERON:0010852 ! fibula pre-cartilage condensation
relationship: develops_into UBERON:0001446 ! fibula
relationship: part_of UBERON:0001441 ! hindlimb skeleton
relationship: part_of UBERON:0005259 {source="EMAPA"} ! lower leg mesenchyme
[Term]
id: UBERON:0010852
name: fibula pre-cartilage condensation
synonym: "fibulal pre-cartilage condensation" EXACT []
synonym: "fibular pre-cartilage condensation" EXACT []
xref: EHDAA2:0000509
xref: EHDAA:6196
is_a: UBERON:0005259 ! lower leg mesenchyme
is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation
relationship: develops_into UBERON:0001446
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0001446 ! fibula
relationship: develops_into UBERON:0001446 ! fibula
relationship: part_of UBERON:0001441 ! hindlimb skeleton
relationship: part_of UBERON:0005259 {source="EHDAA2"} ! lower leg mesenchyme
[Term]
id: UBERON:0010853
name: capitulum of humerus
def: "In human anatomy of the arm, the lateral portion of the articular surface of the humerus consists of a smooth, rounded eminence, named the capitulum of the humerus. It articulates with the cupshaped depression on the head of the radius, and is limited to the front and lower part of the bone.." [Wikipedia:Capitulum_of_the_humerus]
comment: TODO - check AAO. Taxon notes: In birds, where forelimb anatomy has adaptation for flight, its functional if not ontogenetic equivalent is the dorsal condyle of the humerus[WP]
synonym: "capitellum" RELATED [Wikipedia:Capitulum_of_the_humerus]
synonym: "capitulum humeri" RELATED LATIN [Wikipedia:Capitulum_of_the_humerus]
synonym: "capitulum of humerus" RELATED [Wikipedia:Capitulum_of_the_humerus]
synonym: "dorsal condyle of the humerus" RELATED SENSU [Wikipedia:Capitulum_of_the_humerus]
synonym: "humeral capitulum" EXACT [FMA:23373]
xref: FMA:23373
xref: http://upload.wikimedia.org/wikipedia/commons/b/b9/Capitulumhumeri.PNG
xref: SCTID:282816008
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0009988 {source="FMA"} ! condyle of humerus
[Term]
id: UBERON:0010854
name: skin of front of neck
synonym: "skin of anterior neck" EXACT [FMA:23023]
synonym: "skin of anterior part of neck" EXACT [FMA:23023]
synonym: "skin of anterior portion of neck" EXACT [FMA:23023]
synonym: "skin of throat" EXACT []
xref: FMA:23023
xref: SCTID:181482005
is_a: UBERON:0001417 ! skin of neck
relationship: part_of UBERON:0000341
intersection_of: UBERON:0001417 ! skin of neck
intersection_of: part_of UBERON:0000341 ! throat
relationship: part_of UBERON:0000341 ! throat
relationship: part_of UBERON:0011154 ! gular region
[Term]
id: UBERON:0010855
name: skin of forelimb wing
is_a: UBERON:0003531 ! forelimb skin
relationship: part_of UBERON:0000024
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000024 ! forelimb wing
relationship: part_of UBERON:0000024 ! forelimb wing
[Term]
id: UBERON:0010856
name: patagium
def: "." [http://www.brown.edu/Departments/EEB/EML/background/wing_anatomy.htm, Wikipedia:Patagium]
is_a: UBERON:0000094 ! membrane organ
relationship: part_of UBERON:0000023 ! wing
[Term]
id: UBERON:0010858
name: inter limb-segment region
comment: Examples - region between digits in a human embryo; segments of a bat's patagium
is_a: UBERON:0000475 ! organism subdivision
relationship: connected_to UBERON:0002529 {cardinality="2"} ! limb segment
[Term]
id: UBERON:0010861
name: propatagium
is_a: UBERON:0010858 ! inter limb-segment region
relationship: part_of UBERON:0010856 ! patagium
[Term]
id: UBERON:0010862
name: dactylopatagium
is_a: UBERON:0006012 ! interdigital region
relationship: part_of UBERON:0010856
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: part_of UBERON:0010856 ! patagium
relationship: part_of UBERON:0010856 ! patagium
[Term]
id: UBERON:0010863
name: dactylopatagium brevis
is_a: UBERON:0010862 ! dactylopatagium
relationship: connected_to UBERON:0001463
relationship: connected_to UBERON:0003622
intersection_of: UBERON:0010862 ! dactylopatagium
intersection_of: connected_to UBERON:0001463 ! hand digit 1
intersection_of: connected_to UBERON:0003622 ! hand digit 2
relationship: connected_to UBERON:0001463 ! hand digit 1
relationship: connected_to UBERON:0003622 ! hand digit 2
[Term]
id: UBERON:0010864
name: dactylopatagium minus
is_a: UBERON:0010862 ! dactylopatagium
relationship: connected_to UBERON:0003622
relationship: connected_to UBERON:0003623
intersection_of: UBERON:0010862 ! dactylopatagium
intersection_of: connected_to UBERON:0003622 ! hand digit 2
intersection_of: connected_to UBERON:0003623 ! hand digit 3
relationship: connected_to UBERON:0003622 ! hand digit 2
relationship: connected_to UBERON:0003623 ! hand digit 3
[Term]
id: UBERON:0010865
name: dactylopatagium medius
is_a: UBERON:0010862 ! dactylopatagium
relationship: connected_to UBERON:0003623
relationship: connected_to UBERON:0003624
intersection_of: UBERON:0010862 ! dactylopatagium
intersection_of: connected_to UBERON:0003623 ! hand digit 3
intersection_of: connected_to UBERON:0003624 ! hand digit 4
relationship: connected_to UBERON:0003623 ! hand digit 3
relationship: connected_to UBERON:0003624 ! hand digit 4
[Term]
id: UBERON:0010866
name: dactylopatagium major
is_a: UBERON:0010862 ! dactylopatagium
relationship: connected_to UBERON:0003624
relationship: connected_to UBERON:0003625
intersection_of: UBERON:0010862 ! dactylopatagium
intersection_of: connected_to UBERON:0003624 ! hand digit 4
intersection_of: connected_to UBERON:0003625 ! hand digit 5
relationship: connected_to UBERON:0003624 ! hand digit 4
relationship: connected_to UBERON:0003625 ! hand digit 5
[Term]
id: UBERON:0010867
name: plagiopatagium
is_a: UBERON:0010862 ! dactylopatagium
relationship: connected_to UBERON:0003625
relationship: connected_to UBERON:0003823
relationship: part_of UBERON:0010856
intersection_of: UBERON:0010862 ! dactylopatagium
intersection_of: connected_to UBERON:0003625 ! hand digit 5
intersection_of: connected_to UBERON:0003823 ! hindlimb zeugopod
intersection_of: part_of UBERON:0010856 ! patagium
relationship: connected_to UBERON:0003625 ! hand digit 5
relationship: connected_to UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0010856 ! patagium
[Term]
id: UBERON:0010868
name: uropropatagium
def: "the membrane that stretches between the legs of bats, used for flight, and in the case of insect-eating bats, for catching prey." [Wikipedia:Interfemoral_membrane]
synonym: "interfemoral membrane" EXACT []
is_a: UBERON:0010858 ! inter limb-segment region
relationship: connected_to UBERON:0003823 ! hindlimb zeugopod
relationship: part_of UBERON:0010856 ! patagium
[Term]
id: UBERON:0010869
name: calcar
def: "a spur of cartilage arising from inner side of ankle and running along part of outer interfemoral membrane in bats" [Wikipedia:Calcar]
comment: Function notes: to help spread the interfemoral membrane which is part of the wing membrane between the tail and the hind legs.
synonym: "calcaneum" RELATED INCONSISTENT [Wikipedia:Calcar]
synonym: "calcar spur" EXACT []
is_a: UBERON:0002418 ! cartilage tissue
relationship: part_of UBERON:0010868 ! uropropatagium
[Term]
id: UBERON:0010878
name: humeral patagium
is_a: UBERON:0010855 ! skin of forelimb wing
[Term]
id: UBERON:0010879
name: tusk
def: "Elongated, continuously growing front teeth, usually but not always in pairs, that protrude well beyond the mouth of certain mammal species. They are most commonly canines, as with warthogs, pig, and walruses, or, in the case of elephants and narwhals, elongated incisors. In most tusked species both the males and the females have tusks although the males are larger. Tusks are generally curved, though the narwhal's sole tusk is straight and has a helical structure. In the elephant, the tusks were originally second incisors. Continuous growth is enabled by formative tissues in the apical openings of the roots of the teeth" [Wikipedia:Tusk]
xref: SCTID:54040005
is_a: UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0010880
name: gular fold
def: " A transverse fold of skin across the throat (Peters 1964)." [http://imnh.isu.edu/digitalatlas/bio/glsry.htm, http://sourceforge.net/tracker/?func=detail&aid=3414172&group_id=76834&atid=994764, Wikipedia:Gular_fold, Wikipedia:Gular_skin]
synonym: "gular sac" RELATED [Wikipedia:Gular_fold]
synonym: "gular skin" RELATED [Wikipedia:Gular_fold]
synonym: "throat sac" RELATED [Wikipedia:Gular_fold]
xref: AAO:0010238
is_a: UBERON:0010854 ! skin of front of neck
[Term]
id: UBERON:0010881
name: limb bone cartilaginous condensation
is_a: UBERON:0005863 ! cartilaginous condensation
relationship: develops_into UBERON:0002428
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0002428 ! limb bone
relationship: develops_from UBERON:0010882 ! limb bone pre-cartilage condensation
relationship: develops_into UBERON:0002428 ! limb bone
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
[Term]
id: UBERON:0010882
name: limb bone pre-cartilage condensation
is_a: UBERON:0005866 ! pre-cartilage condensation
relationship: develops_into UBERON:0002428
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0002428 ! limb bone
relationship: develops_into UBERON:0002428 ! limb bone
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
[Term]
id: UBERON:0010883
name: forelimb bone cartilaginous condensation
subset: grouping_class
is_a: UBERON:0003859 ! forelimb mesenchyme
is_a: UBERON:0010881 ! limb bone cartilaginous condensation
relationship: develops_into UBERON:0008962
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0008962 ! forelimb bone
relationship: develops_from UBERON:0010884 ! forelimb bone pre-cartilage condensation
relationship: develops_into UBERON:0008962 ! forelimb bone
relationship: part_of UBERON:0001440 ! forelimb skeleton
[Term]
id: UBERON:0010884
name: forelimb bone pre-cartilage condensation
subset: grouping_class
is_a: UBERON:0003859 ! forelimb mesenchyme
is_a: UBERON:0010882 ! limb bone pre-cartilage condensation
relationship: develops_into UBERON:0008962
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0008962 ! forelimb bone
relationship: develops_into UBERON:0008962 ! forelimb bone
relationship: part_of UBERON:0001440 ! forelimb skeleton
[Term]
id: UBERON:0010885
name: hindlimb bone cartilaginous condensation
is_a: UBERON:0003860 ! hindlimb mesenchyme
is_a: UBERON:0010881 ! limb bone cartilaginous condensation
relationship: develops_into UBERON:0003464
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0003464 ! hindlimb bone
relationship: develops_from UBERON:0010886 ! hindlimb bone pre-cartilage condensation
relationship: develops_into UBERON:0003464 ! hindlimb bone
relationship: part_of UBERON:0001441 ! hindlimb skeleton
[Term]
id: UBERON:0010886
name: hindlimb bone pre-cartilage condensation
is_a: UBERON:0003860 ! hindlimb mesenchyme
is_a: UBERON:0010882 ! limb bone pre-cartilage condensation
relationship: develops_into UBERON:0003464
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0003464 ! hindlimb bone
relationship: develops_into UBERON:0003464 ! hindlimb bone
relationship: part_of UBERON:0001441 ! hindlimb skeleton
[Term]
id: UBERON:0010887
name: tragus
def: "a small pointed eminence of the external ear, situated in front of the concha, and projecting backward over the meatus." [Wikipedia:Tragus_(ear)]
comment: Taxon notes: The tragus is generally believed to play a role in vertical sound localization in bats
synonym: "tragal part of pinna" EXACT [FMA:60998]
xref: FMA:60998
xref: ncithesaurus:Tragus
xref: SCTID:362541003
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001757 {source="FMA"} ! pinna
[Term]
id: UBERON:0010888
name: seta
def: "A hair-like unicellular external process of the body wall or any derivative of the latter; a hair; a bristle." [BTO:0004212]
comment: Obsoleted as the term 'seta' refers to a variety of different structures. For insect chaetae, consider the arthropod anatomy ontology.
synonym: "bristle" RELATED [BTO:0004212]
synonym: "chaeta" RELATED [MIAA:0000152]
synonym: "sensory bristle" RELATED [MIAA:0000152]
is_obsolete: true
[Term]
id: UBERON:0010889
name: ectethmoid
def: "either of two lateral parts of the ethmoid bone that form part of the anterior wall of the orbit " [http://www.merriam-webster.com/medical/ectethmoid]
comment: Taxon notes: In avians, the mesethmoid supports upper beak formation
synonym: "dorsal nasal capsule" EXACT [PMID:21270050]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001679 ! ethmoid bone
[Term]
id: UBERON:0010890
name: pelvic complex muscle
def: "Muscles of the pelvic girdle, hindlimb or pelvic fin." [UBERON:cjm]
synonym: "lower limb muscle" RELATED INCONSISTENT [FMA:9622]
synonym: "muscle of lower limb" RELATED INCONSISTENT [FMA:9622]
synonym: "pelvic girdle or hind limb muscle" NARROW [UBERON:cjm]
synonym: "pelvic girdle or posterior limb muscle" NARROW [UBERON:cjm]
xref: AAO:0000218
xref: FMA:9622
xref: MA:0000663
property_value: UBPROP:0000001 "Muscles of the pelvic girdle, thigh, leg (crus), and foot (pes).[AAO]" xsd:string
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0010709
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0010709 ! pelvic complex
relationship: part_of UBERON:0010709 ! pelvic complex
[Term]
id: UBERON:0010891
name: pectoral complex muscle
def: "A muscle of a pectoral girdle, pectoral fin or anterior limb." [UBERON:cjm]
synonym: "muscle of upper limb" NARROW INCONSISTENT [FMA:9621]
synonym: "upper limb muscle" NARROW INCONSISTENT [FMA:9621]
xref: AAO:0010687
xref: FMA:9621
xref: MA:0000615
property_value: UBPROP:0000001 "Muscles of the pectoral girdle, arm, forearm, and hand (brachium, antebrachium, manus respectively).[AAO]" xsd:string
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0010708
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0010708 ! pectoral complex
relationship: part_of UBERON:0010708 ! pectoral complex
[Term]
id: UBERON:0010892
name: mesethmoid element
def: "region of the nasal capsule that forms septum between nasal capsules and usually remains unossified in mammals" [ISBN10:0073040584]
synonym: "mesethmoid" RELATED [AAO:0000303]
synonym: "ventral nasal capsule" EXACT [PMID:21270050]
xref: AAO:0000303
property_value: UBPROP:0000001 "Endochondral ossification of the anteromedial portion of the braincase.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of braincase and otic capsule skeleton (AAO:0000052)[AAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0005945 {source="TAO"} ! neurocranial trabecula
relationship: part_of UBERON:0011241 {source="Kardong"} ! ethmoid region
[Term]
id: UBERON:0010893
name: median external naris
subset: cyclostome_subset
synonym: "nasohypophysial opening" EXACT [http://tolweb.org/Hyperoartia]
is_a: UBERON:0005928 ! external naris
[Term]
id: UBERON:0010894
name: keratinous tooth
comment: The hagfish's jawless mouth contains two parallel rows of pointed keratinous teeth
subset: cyclostome_subset
synonym: "horny denticle" EXACT [http://tolweb.org/Hyperoartia]
is_a: UBERON:0003913 ! tooth-like structure
[Term]
id: UBERON:0010895
name: sequential hermaphroditic organism
def: "Hermaphroditic organism that produces gametes first of one sex, and then later of the other sex." [CARO:0000045]
synonym: "consecutive hermaphroditic organism" RELATED [CARO:0000045]
xref: AAO:0010037
xref: BILA:0000045
xref: CARO:0000045
xref: HAO:0000045
xref: TADS:0000608
is_a: UBERON:0007197 {source="CARO"} ! hermaphroditic organism
[Term]
id: UBERON:0010896
name: piston cartilage
comment: Composition notes: composed of lamprin, an elastin-like protein, unique to lampreys
subset: cyclostome_subset
synonym: "lamprey tongue" RELATED []
synonym: "lingual cartilage" EXACT []
synonym: "piston" RELATED []
is_a: UBERON:0002418 ! cartilage tissue
[Term]
id: UBERON:0010898
name: gastralium
def: "Dermal element that arises via intramembranous ossification and are developmentally distinct from true ribs that articulate with the vertebral column." [VSAO:0000127, Wikipedia:Gastralium]
comment: hese bones may have been derived from the ventral scales found in animals like rhipidistians, labyrinthodonts, and Acanthostega, and may be related to ventral elements of turtle plastrons[WP]
synonym: "abdominal rib" EXACT [ISBN10:0073040584, VSAO:curator]
synonym: "belly rib" EXACT [VSAO:curator]
synonym: "gastralia" EXACT PLURAL [VSAO:0000127]
xref: VSAO:0000127
is_a: UBERON:0003828 ! abdominal segment bone
is_a: UBERON:0005172 ! abdomen organ
is_a: UBERON:0008907 {source="VSAO"} ! dermal bone
relationship: part_of UBERON:0006635 {source="Kardong"} ! anterior abdominal wall
[Term]
id: UBERON:0010899
name: synchronous hermaphroditic organism
def: "Hermaphroditic organism that produces both male and female gametes at the same time." [CARO:0000046]
synonym: "serially hermaphroditic organism" RELATED [CARO:0000046]
xref: AAO:0010046
xref: BILA:0000046
xref: CARO:0000046
xref: HAO:0000046
xref: TADS:0000609
is_a: UBERON:0007197 {source="CARO"} ! hermaphroditic organism
relationship: has_part UBERON:0000473
relationship: has_part UBERON:0000992
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: has_part UBERON:0000473 ! testis
intersection_of: has_part UBERON:0000992 ! female gonad
relationship: has_part UBERON:0000473 ! testis
relationship: has_part UBERON:0000992 ! female gonad
[Term]
id: UBERON:0010900
name: tarsometatarsus cartilaginous condensation
is_a: UBERON:0010885 ! hindlimb bone cartilaginous condensation
relationship: develops_into UBERON:0008195
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0008195 ! tarsometatarsus
relationship: develops_from UBERON:0010901 ! tarsometatarsus pre-cartilage condensation
relationship: develops_into UBERON:0008195 ! tarsometatarsus
relationship: part_of UBERON:0001445 ! skeleton of foot
[Term]
id: UBERON:0010901
name: tarsometatarsus pre-cartilage condensation
is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation
relationship: develops_into UBERON:0008195
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0008195 ! tarsometatarsus
relationship: develops_into UBERON:0008195 ! tarsometatarsus
relationship: part_of UBERON:0001445 ! skeleton of foot
[Term]
id: UBERON:0010902
name: tibiotarsus cartilaginous condensation
is_a: UBERON:0010885 ! hindlimb bone cartilaginous condensation
relationship: develops_into UBERON:0008194
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0008194 ! tibiotarsus
relationship: develops_from UBERON:0010903 ! tibiotarsus pre-cartilage condensation
relationship: develops_into UBERON:0008194 ! tibiotarsus
relationship: part_of UBERON:0001441 ! hindlimb skeleton
[Term]
id: UBERON:0010903
name: tibiotarsus pre-cartilage condensation
is_a: UBERON:0010886 ! hindlimb bone pre-cartilage condensation
relationship: develops_into UBERON:0008194
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0008194 ! tibiotarsus
relationship: develops_into UBERON:0008194 ! tibiotarsus
relationship: part_of UBERON:0001441 ! hindlimb skeleton
[Term]
id: UBERON:0010904
name: pectoral fin scapula
def: "Endochondral bone that is located medial to the cleithrum, and articulates ventrally with the coracoid, medially with the mesocoracoid when the later is present and posteriorly with the upper one to three proximal radials. The scapula develops from the scapulocoracoid cartilage and belongs to the primary pectoral girdle. It may be perforated by the scapular foramen or it may be notched ventrally and forms together with a similar notch of the coracoid the scapulocoracoid foramen." [TAO:0000583]
comment: Alternate definition: A scapula that is connected to a pectoral fin
synonym: "teleost scapula" RELATED []
xref: TAO:0000583
xref: ZFA:0000583
is_a: UBERON:0006849 ! scapula
relationship: develops_from UBERON:0004753 {source="ZFA"} ! scapulocoracoid
[Term]
id: UBERON:0010905
name: clavicle bone primordium
comment: lateral part derives from a fish dermal bone while the medial part comes from a spur off the manubrium endochondral bone[JB]
synonym: "calvicle primordium" EXACT []
xref: EHDAA2:0000254
is_a: UBERON:0002514 {source="EHDAA2"} ! intramembranous bone
is_a: UBERON:0007829 ! pectoral girdle bone
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme
relationship: has_developmental_contribution_from UBERON:0002342 {editor="mah", notes="shown in mouse", source="PMC1352163"} ! neural crest
relationship: part_of UBERON:0007831 {source="EHDAA2"} ! skeleton of pectoral girdle
[Term]
id: UBERON:0010907
name: parafibula
def: "third bone of the lower leg, normally restricted to the area of the knee, in multuberculates, monotremes and some therians" [http://palaeos.com/vertebrates/glossary/glossaryP.html#P]
is_a: UBERON:0005893 ! leg bone
[Term]
id: UBERON:0010908
name: paraglossale
def: "in the avian hyoid apparatus, the arrowhead-shaped bone which forms the base of the tongue" [http://palaeos.com/vertebrates/glossary/glossaryP.html#P]
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003462 ! facial bone
relationship: part_of UBERON:0010272 ! hyoid apparatus
[Term]
id: UBERON:0010910
name: opisthotic
def: "Posterior ossification of the otic capsule." [AAO:0010835, http://palaeos.com/vertebrates/bones/braincase/opisthotic.html]
comment: Taxon notes: teleost fishes have a bone which is called the opisthotic. However, it is not homologous to the tetrapod opisthotic and the teleost otic capsule is all of a piece[palaeos] - see TAO:0000474 - intercalar "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal."
xref: AAO:0010835
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0004637 {source="AAO"} ! otic capsule
[Term]
id: UBERON:0010911
name: ossicle
def: "Skeletal element that is small dermal or endochondral bone." [VSAO:0000132]
comment: Ossicles are composed of a combination skeletal tissues, including bone, calcified cartilage, hyaline cartilage, etc, and exhibit variable development across species. Ossicles are not necessarily jointed, and examples include the menisci of synovial joints, "Panda's thumb" (radial sesamoid), cardiac skeletal elements, sclerotic bones, middle ear ossicles, and sesamoids.
xref: VSAO:0000132
property_value: UBPROP:0000001 "Skeletal element that is often isolated, small, and variable in composition.[VSAO]" xsd:string
is_a: UBERON:0002513 ! endochondral bone
relationship: develops_from UBERON:0002513 {source="VSAO"} ! endochondral bone
[Term]
id: UBERON:0010912
name: subdivision of skeleton
def: "Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints." [UBERON:cjm, UBERONREF:0000003]
comment: AO notes: VSAO def logically wrong
synonym: "skeletal subdivision" EXACT [VSAO:0000042]
synonym: "subdivision of skeleton (in vivo)" RELATED [FMA:23879]
xref: FMA:23879
xref: SCTID:129140006
xref: VSAO:0000042
property_value: UBPROP:0000001 "Anatomical cluster consisting of the skeletal elements that are part of the skeleton.[VSAO]" xsd:string
is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision
relationship: part_of UBERON:0000075 {source="UBERONREF:0000003"} ! subdivision of skeletal system
relationship: part_of UBERON:0004288 {source="VSAO"} ! skeleton
[Term]
id: UBERON:0010913
name: vertebral element
def: "Skeletal element that forms around the notochord and is part of the vertebral column." [VSAO:0000184]
comment: Note that Uberon includes a distinct subclass for bony vertebra
xref: VHOG:0001143
xref: VSAO:0000184
is_a: UBERON:0004765 {source="VSAO"} ! skeletal element
relationship: part_of UBERON:0001130 {source="VSAO"} ! vertebral column
[Term]
id: UBERON:0010921
name: thyrohyoid ligament
xref: FMA:55135
xref: ncithesaurus:Thyrohyoid_Ligament
xref: SCTID:279551000
is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament
[Term]
id: UBERON:0010925
name: median thyrohyoid ligament
def: "The middle thicker part of the thyrohyoid membrane is termed the median thyrohyoid ligament (middle hyothyroid ligament, middle thyrohyoid ligament), its lateral thinner portions are pierced by the superior laryngeal vessels and the internal branch of the superior laryngeal nerve. Its anterior surface is in relation with the Thyreohyoideus, Sternohyoideus, and Omohyoideus, and with the body of the hyoid bone" [Wikipedia:Median_thyrohyoid_ligament]
synonym: "ligamentum thyrohyoideum medianum" EXACT []
synonym: "middle thyrohyoid ligament" EXACT [FMA:55138]
xref: FMA:55138
xref: ncithesaurus:Middle_Thyrohyoid_Ligament
xref: SCTID:279554008
is_a: UBERON:0010921 {source="FMA"} ! thyrohyoid ligament
[Term]
id: UBERON:0010926
name: lateral thyrohyoid ligament
def: "The lateral thyrohyoid ligament (lateral hyothyroid ligament) is a round elastic cord, which forms the posterior border of the hyothyroid membrane and passes between the tip of the superior cornu of the thyroid cartilage and the extremity of the greater cornu of the hyoid bone. The recurrent laryngeal nerve typical lies lateral to this ligament" [Wikipedia:Lateral_thyrohyoid_ligament]
synonym: "ligamentum hyothyreoideum laterale" EXACT []
synonym: "ligamentum thyrohyoideum laterale" EXACT []
xref: FMA:55139
xref: ncithesaurus:Lateral_Thyrohyoid_Ligament
xref: SCTID:279555009
is_a: UBERON:0010921 {source="FMA"} ! thyrohyoid ligament
[Term]
id: UBERON:0010927
name: thyroepiglotticus muscle
def: "fibers of the thyroarytenoid muscle that continue to the margin of the epiglottis; it closes the inlet to the larynx." [http://medical-dictionary.thefreedictionary.com/thyroepiglottic+muscle, Wikipedia:Thyroepiglottic_muscle]
comment: AO notes: not a distinct muscle in FMA
synonym: "pars thyroepiglottica (musculus thyroarytenoideus)" EXACT [FMA:46594]
synonym: "pars thyroepiglottica musculi thyroarytenoidei" RELATED LATIN [Wikipedia:Thyroepiglottic_muscle]
synonym: "pars thyroepiglottica musculus thyroarytenoidei" EXACT [FMA:TA]
synonym: "thyro-epiglottic part of thyro-arytenoid" EXACT [FMA:46594]
synonym: "thyroepiglottic" EXACT []
synonym: "thyroepiglottic muscle" EXACT [FMA:46594]
synonym: "thyroepiglotticus" EXACT [FMA:46594]
synonym: "thyroepiglottus" EXACT []
synonym: "thyroepiglottus muscle" EXACT []
xref: FMA:46594
xref: http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png
xref: ncithesaurus:Thyroepiglottic_Muscle
xref: SCTID:244819001
property_value: UBPROP:0000001 "Thexton, see notes from WG2.[FEED]" xsd:string
is_a: UBERON:0001568 {source="ncithesaurus"} ! muscle of larynx
relationship: part_of UBERON:0008576 {source="FMA"} ! thyro-arytenoid
[Term]
id: UBERON:0010928
name: cricopharyngeus
comment: muscle belly
synonym: "cricopharyngeal part of inferior constrictor pharyngeus" EXACT [FMA:46661]
synonym: "cricopharyngeal part of inferior pharyngeal constrictor" EXACT [FMA:46661]
synonym: "cricopharyngeal part of inferior pharyngeal constrictor muscle" EXACT []
synonym: "cricopharyngeus muscle" RELATED []
synonym: "pars cricopharyngea (musculus constrictor pharyngis inferior)" EXACT [FMA:46661]
synonym: "pars cricopharyngea musculus constrictoris pharyngis inferioris" EXACT [FMA:TA]
xref: FMA:46661
xref: ncithesaurus:Cricopharyngeus_Muscle
xref: SCTID:244804002
property_value: UBPROP:0000001 "The cricopharyngeus is a pharyngeal arch 4/6 muscle that participates in oral/pharyngeal behaviors and is innervated by the pharyngeal plexus and the recurrent laryngeal n. , and is an integral part of the pharyngeal tube, and attaches to the cricoid cartilage and the midline raphe. It acts as a sphincter between the pharynx and esophagus.[FEED]" xsd:string
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor
[Term]
id: UBERON:0010929
name: stapedius pre-muscle condensation
xref: EHDAA2:0001909
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
is_a: UBERON:0009506 ! associated mesenchyme of middle ear
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0009506 {source="EHDAA2"} ! associated mesenchyme of middle ear
relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear
[Term]
id: UBERON:0010930
name: interhyoideus
comment: Usage notes: may be obsoleted. Muscle between hyoid arches in fish; Taxon notes: the [mammalian] interhyoideus is homologous with the simple interhyoideus of early stages of amphibia[Edgeworth, 1935]. most extant actinopterygians part of the interhyoideus separates into a distinct muscle during development, the hyohyoideus - http://www.biomedcentral.com/1471-213X/8/24/
synonym: "interhyoideus muscle" EXACT []
xref: AAO:0010649
property_value: UBPROP:0000001 "One of the principal muscles used in swallowing.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO]" xsd:string
is_a: UBERON:0005493 ! hyoid muscle
[Term]
id: UBERON:0010931
name: intermandibularis
def: "Is a mandibular muscle that develops into the ventral intermandibularis anterior and posterior muscles." [ZFA:0000369]
synonym: "intermandibular muscle" RELATED [ZFIN:ZDB-PUB-060921-12]
synonym: "intermandibularis muscle" EXACT []
xref: AAO:0010647
xref: TAO:0000369
xref: ZFA:0000369
property_value: UBPROP:0000001 "One of the principal muscles used in swallowing.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO]" xsd:string
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0010932
name: crico-arytenoid muscle
def: "Cricoarytenoid muscles are muscles that connect the cricoid cartilage and arytenoid cartilage. More specifically, it can refer to: Posterior cricoarytenoid muscle Lateral cricoarytenoid muscle" [Wikipedia:Cricoarytenoid_muscle]
synonym: "crico-arytenoid" EXACT [Wikipedia:Cricoarytenoid_muscle]
synonym: "cricoarytenoid" EXACT [Wikipedia:Cricoarytenoid_muscle]
synonym: "cricoarytenoid muscle" EXACT [Wikipedia:Cricoarytenoid_muscle]
synonym: "cricoarytenoideus" EXACT []
xref: http://upload.wikimedia.org/wikipedia/commons/9/96/Gray959.png
xref: MA:0002283
xref: ncithesaurus:Cricoarytenoid_Muscle
xref: SCTID:244811003
is_a: UBERON:0006328 {source="FMA"} ! laryngeal intrinsic muscle
relationship: part_of UBERON:0001737 {source="FMA"} ! larynx
[Term]
id: UBERON:0010933
name: orbicularis oris muscle
def: "In human anatomy, the orbicularis oris muscle is the sphincter muscle around the mouth. This muscle closes the mouth and puckers the lips when it contracts." [Wikipedia:Orbicularis_oris_muscle]
synonym: "incisivii labii inferioris" RELATED [Wikipedia:Orbicularis_oris_muscle]
synonym: "incisivii labii superioris" RELATED [Wikipedia:Orbicularis_oris_muscle]
synonym: "musculus orbicularis oris" RELATED LATIN [Wikipedia:Orbicularis_oris_muscle]
synonym: "nasolabialis muscle" RELATED [Wikipedia:Orbicularis_oris_muscle]
synonym: "orbicularis oris" EXACT [FMA:46841]
synonym: "orbicularis oris" RELATED [Wikipedia:Orbicularis_oris_muscle]
xref: FMA:46841
xref: http://upload.wikimedia.org/wikipedia/commons/b/b6/Orbicularis_oris.jpg
xref: SCTID:244749008
property_value: UBPROP:0000001 "The orbicularis oris is a superficial facial muscle that attaches to the skin and modiolus, and that participates in oral/pharyngeal behaviors, and is innervated by the facial nerve .[FEED]" xsd:string
is_a: UBERON:0001577 {source="FMA"} ! facial muscle
relationship: attaches_to UBERON:0011386 ! facial modiolus
relationship: has_muscle_insertion UBERON:0001458 {notes="Skin around the lips", source="dbpedia"} ! skin of lip
relationship: has_muscle_nerve UBERON:0001647 {notes="cranial nerve VII buccal branch of the facial nerve", source="dbpedia"} ! facial nerve
relationship: has_muscle_origin UBERON:0001684 {notes="Maxilla and mandible", source="dbpedia"} ! mandible
relationship: has_muscle_origin UBERON:0002397 {notes="Maxilla and mandible", source="dbpedia"} ! maxilla
[Term]
id: UBERON:0010934
name: panniculus carnosus
def: "a part of the subcutaneous tissues in the study of animal anatomy. It is a layer of striated muscle deep to the panniculus adiposus" [Wikipedia:Panniculus_carnosus]
synonym: "panniculus carnosus group" EXACT [EMAPA:18189]
xref: EMAPA:18189
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0002072 ! hypodermis
[Term]
id: UBERON:0010935
name: tensor tympani pre-muscle condensation
xref: EHDAA2:0002002
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
is_a: UBERON:0009506 ! associated mesenchyme of middle ear
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0009506 {source="EHDAA2"} ! associated mesenchyme of middle ear
relationship: part_of UBERON:0001756 {source="EHDAA2"} ! middle ear
[Term]
id: UBERON:0010936
name: thyropharyngeus
comment: muscle belly
synonym: "pars thyropharyngea (musculus constrictor pharyngis inferior)" EXACT [FMA:46658]
synonym: "pars thyropharyngea musculus constrictoris pharyngis inferioris" EXACT [FMA:TA]
synonym: "thyropharyngeal part of inferior constrictor pharyngeus" EXACT [FMA:46658]
synonym: "thyropharyngeal part of inferior constrictor pharyngeus muscle" EXACT []
synonym: "thyropharyngeal part of inferior pharyngeal constrictor" EXACT [FMA:46658]
xref: FMA:46658
xref: SCTID:244805001
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor
[Term]
id: UBERON:0010937
name: salpingopharyngeus muscle
def: "The salpingopharyngeus muscle arises from the inferior part of the cartilage of the pharyngotympanic tube (Eustachian tube) in the nasal cavity; it passes downward and blends with the posterior fasciculus of the palatopharyngeus muscle. The salpingopharyngeus is known to raise the pharynx and larynx during deglutition (swallowing) and laterally draws the pharyngeal walls up. In addition, it opens the pharyngeal orifice of the pharyngotympanic tube during swallowing. This allows for the equalization of pressure between the auditory canal and the pharynx. The salpingopharyngeus is innervated by the vagus nerve (CN X) via the pharyngeal plexus." [Wikipedia:Salpingopharyngeus_muscle]
synonym: "musculus salpingopharyngeus" RELATED LATIN [Wikipedia:Salpingopharyngeus_muscle]
synonym: "salpingopharyngeus" EXACT [Wikipedia:Salpingopharyngeus_muscle]
xref: FMA:46665
xref: http://upload.wikimedia.org/wikipedia/commons/e/e3/Salpingopharyngeus.png
xref: ncithesaurus:Salpingopharyngeus
xref: SCTID:244807009
property_value: UBPROP:0000001 "Salpingopharyngeus is a muscle that attaches to pharyngotympanic tube and the pharynx and is innervated by pharyngeal plexus of CN X and participates in oral/pharyngeal behaviors.[FEED]" xsd:string
is_a: UBERON:0000933 {source="FMA"} ! pharyngeal muscle
relationship: has_muscle_insertion UBERON:0001738 {source="dbpedia", notes="fibers pass downward and blend with the palatopharyngeus muscle to the upper border thyroid cartilage blending with constrictor fibers"} ! thyroid cartilage
relationship: has_muscle_insertion UBERON:0010234 {source="dbpedia", notes="fibers pass downward and blend with the palatopharyngeus muscle to the upper border thyroid cartilage blending with constrictor fibers"} ! palatopharyngeus
relationship: has_muscle_nerve UBERON:0001759 {source="dbpedia", notes="vagus nerve and cranial accessory nerve"} ! vagus nerve
relationship: has_muscle_nerve UBERON:0002019 {source="dbpedia", notes="vagus nerve and cranial accessory nerve"} ! accessory XI nerve
relationship: has_muscle_origin UBERON:0007354 {source="dbpedia", notes="lower part of the cartilage of the auditory tube"} ! cartilage of pharyngotympanic tube
[Term]
id: UBERON:0010938
name: muscle belly
synonym: "belly" EXACT [FMA:9719]
synonym: "venter" EXACT [FMA:TA]
xref: FMA:9719
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001630 {source="FMA"} ! muscle organ
[Term]
id: UBERON:0010939
name: zygomaticomandibularis muscle
synonym: "masseter, deep" RELATED [FEED:FEED]
synonym: "zygomaticomandibularis" EXACT [FEED:FEED]
synonym: "zygomaticomandibularis muscle" EXACT []
property_value: UBPROP:0000001 "The deep masseter is a separable part of the masseter muscle that attaches to lateral surface and/or ventral border of zygomatic arch.[FEED]" xsd:string
property_value: UBPROP:0000001 "The zygomaticomandibularis is a separable part of the masseter muscle that attaches to the medial surface of the zygomatic arch.[FEED]" xsd:string
is_a: UBERON:0002376 ! muscle of head
relationship: part_of UBERON:0001597 ! masseter muscle
[Term]
id: UBERON:0010940
name: belly of digastric
synonym: "digastric belly" EXACT [FMA:46297]
xref: FMA:46297
xref: SCTID:360772008
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010938 ! muscle belly
relationship: part_of UBERON:0001562
intersection_of: UBERON:0010938 ! muscle belly
intersection_of: part_of UBERON:0001562 ! digastric muscle
relationship: part_of UBERON:0001562 ! digastric muscle
[Term]
id: UBERON:0010943
name: anterior belly of digastric
synonym: "anterior belly of digastric muscle" EXACT []
synonym: "digastric, anterior" EXACT [FEED:FEED]
synonym: "digastricus anterior" EXACT []
synonym: "digastricus, venter rostralis" EXACT []
synonym: "venter anterior (musculus digastricus)" EXACT [FMA:46302]
xref: FMA:46302
xref: SCTID:141804004
property_value: UBPROP:0000001 "The anterior digastric is a pharyngeal arch I muscle that participates in oral/pharygeal behaviors and is innervated by the nerve to mylohyoid and superficial to mylohyoid muscle, and lacks the midline raphe.[FEED]" xsd:string
is_a: UBERON:0010940 ! belly of digastric
relationship: has_muscle_origin UBERON:0001684 ! mandible
[Term]
id: UBERON:0010944
name: posterior belly of digastric
synonym: "digastric, posterior" EXACT [FEED:FEED]
synonym: "digastricus posterior" EXACT []
synonym: "digastricus, venter caudalis" EXACT []
synonym: "posterior belly of digastric muscle" EXACT []
xref: FMA:46303
xref: SCTID:141905002
property_value: UBPROP:0000001 "The posterior digastric is a pharyngeal arch II muscle that participates in oral pharyngeal behavior, is innervated by the digastric branchi of facial nerve and attaches to the posterior cranial base.[FEED]" xsd:string
is_a: UBERON:0010940 ! belly of digastric
relationship: has_muscle_origin UBERON:0011220 {source="Wikipedia:Mastoid_process"} ! mastoid process of temporal bone
[Term]
id: UBERON:0010945
name: jugulohyoideus muscle
def: "runs from the processus jugularis to the os stylohyoideum; innervated with the ramus jugulohyoideus from the nervus facialis" [PMID:7839797]
comment: See also: stylohyoid muscle
synonym: "jugulohyoid" RELATED []
synonym: "jugulohyoideus" RELATED []
synonym: "musculus jugulohyoideus" RELATED []
synonym: "musculus occipitohyoideus" RELATED []
synonym: "occipitohyoid" RELATED []
synonym: "occipitohyoideus" RELATED []
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0010946
name: occipitofrontalis muscle
def: "The occipitofrontalis or epicranius is a muscle which covers parts of the skull. It consists of two parts or bellies: The occipital belly, near the occipital bone, and the frontal belly, near the frontal bone. Some sources consider the occipitofrontalis to be a structure consisting of two distinct muscles, the Frontalis and the occipitalis. However, Terminologia Anatomica currently classifies it as a single muscle." [Wikipedia:Occipitofrontalis_muscle]
comment: zone of muscle in FMA
synonym: "epicranius" RELATED [Wikipedia:Occipitofrontalis_muscle]
synonym: "musculus occipitofrontalis" RELATED LATIN [Wikipedia:Occipitofrontalis_muscle]
synonym: "occipitofrontalis" RELATED [Wikipedia:Occipitofrontalis_muscle]
xref: FMA:9624
xref: http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png
xref: ncithesaurus:Occipito-frontalis_Muscle
xref: SCTID:361811007
is_a: UBERON:0001577 ! facial muscle
relationship: has_muscle_insertion UBERON:0006661 {source="dbpedia"} ! epicranial aponeurosis
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia"} ! facial nerve
[Term]
id: UBERON:0010947
name: occipitalis
synonym: "occipital belly of occipitofrontalis" EXACT [FMA:46758]
synonym: "occipital part of occipitofrontalis" EXACT [FMA:46758]
synonym: "venter occipitalis (musculus occipitofrontalis)" EXACT [FMA:46758]
synonym: "venter transversa musculus occipitofrontalis occipitalis" EXACT [FMA:TA]
xref: FMA:46758
xref: SCTID:21405000
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010938 ! muscle belly
relationship: part_of UBERON:0010946 {source="FMA"} ! occipitofrontalis muscle
[Term]
id: UBERON:0010948
name: cleidooccipital muscle
comment: Some studies have indicated a supernumerary cleido-occipital muscle more or less separate from the sterno-cleido-mastoid muscle; The frequency of cleido-occipital muscle occurrence has been reported up to 33%
synonym: "cleido-occipitalis" EXACT []
synonym: "cleido-occipitalis muscle" EXACT []
xref: MA:0002276
is_a: UBERON:0000933 ! pharyngeal muscle
relationship: attaches_to UBERON:0001105
relationship: attaches_to UBERON:0001676
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: attaches_to UBERON:0001105 ! clavicle
intersection_of: attaches_to UBERON:0001676 ! occipital bone
relationship: attaches_to UBERON:0001105 ! clavicle
relationship: attaches_to UBERON:0001676 ! occipital bone
[Term]
id: UBERON:0010949
name: sternooccipital muscle
synonym: "sternooccipital" EXACT [MA:0002385]
xref: MA:0002385
xref: ncithesaurus:Sternooccipital
is_a: UBERON:0002377 ! muscle of neck
relationship: has_muscle_insertion UBERON:0001676
relationship: has_muscle_origin UBERON:0000975
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: has_muscle_insertion UBERON:0001676 ! occipital bone
intersection_of: has_muscle_origin UBERON:0000975 ! sternum
relationship: has_muscle_insertion UBERON:0001676 ! occipital bone
relationship: has_muscle_origin UBERON:0000975 ! sternum
[Term]
id: UBERON:0010950
name: styloauricular muscle
def: "An occasional small muscle extending from the root of the styloid process to the cartilage of the meatus of the ear" [http://www.mondofacto.com/facts/dictionary?musculus+styloauricularis]
synonym: "mandibulo-auricularis" EXACT []
synonym: "mandibulo-auricularis muscle" EXACT []
synonym: "stylo-auricularis" EXACT []
synonym: "stylo-auricularis muscle" EXACT []
synonym: "styloauricularis" EXACT []
is_a: UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0010951
name: interscutular muscle
def: "a muscle that attaches to the base of the ear and to the middle of the skull" [PMID:19209956]
synonym: "interscutularis" EXACT []
synonym: "musculus interscutularis" EXACT []
is_a: UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0010952
name: frontalis
def: "The frontalis muscle is thin, of a quadrilateral form, and intimately adherent to the superficial fascia. It is broader than the Occipitalis and its fibers are longer and paler in color. It is located on the front of the head. It has no bony attachments. Its medial fibers are continuous with those of the Procerus; its immediate fibers blend with the Corrugator and Orbicularis oculi, thus attached to the skin of the eyebrows; and its lateral fibers are also blended with the latter muscle over the zygomatic process of the frontal bone. In the eyebrows, its primary function is to lift them (thus opposing the orbital portion of the orbicularis), especially when looking up. It also acts when a view is too distant or dim. From these attachments the fibers are directed upward, and join the galea aponeurotica below the coronal suture. The medial margins of the Frontales are joined together for some distance above the root of the nose; but between the Occipitales there is a considerable, though variable, interval, occupied by the galea aponeurotica. It could be part of occipitofrontalis muscle." [Wikipedia:Frontalis_muscle]
synonym: "frontal belly of occipitofrontalis" EXACT [FMA:46757]
synonym: "frontal belly of occipitofrontalis muscle" RELATED [Wikipedia:Frontalis_muscle]
synonym: "frontal part of occipitofrontalis" EXACT [FMA:46757]
synonym: "orbito-temporo-auricularis" EXACT [PMID:18657257]
synonym: "venter frontalis (musculus occipitofrontalis)" EXACT [FMA:46757]
synonym: "venter frontalis musculi occipitofrontalis" RELATED LATIN [Wikipedia:Frontalis_muscle]
synonym: "venter frontalis musculus occipitofrontalis" EXACT [FMA:TA]
xref: FMA:46757
xref: http://upload.wikimedia.org/wikipedia/commons/b/be/Musculus_frontalis.png
xref: SCTID:368680005
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
is_a: UBERON:0010938 ! muscle belly
relationship: has_muscle_nerve UBERON:0001647 {source="dbpedia"} ! facial nerve
relationship: has_muscle_origin UBERON:0006661 {source="dbpedia"} ! epicranial aponeurosis
relationship: part_of UBERON:0010946 {source="FMA"} ! occipitofrontalis muscle
[Term]
id: UBERON:0010953
name: nasalis muscle
def: "The nasalis (compressor naris) is a sphincter-like muscle of the nose whose function is to compress the nasal cartilage. It consists of two parts, transverse and alar: The transverse part arises from the maxilla, above and lateral to the incisive fossa; its fibers proceed upward and medially, expanding into a thin aponeurosis which is continuous on the bridge of the nose with that of the muscle of the opposite side, and with the aponeurosis of the Procerus. The alar part is attached at one end to the greater alar cartilage, and at the other to the integument at the point of the nose. Other sources divide it into \"Compressor nasalis\" and \"Dilator nasalis\"." [Wikipedia:Nasalis_muscle]
synonym: "compressor naris" RELATED [Wikipedia:Nasalis_muscle]
synonym: "compressor narium minor" RELATED [Wikipedia:Nasalis_muscle]
synonym: "compressor nasi" RELATED [Wikipedia:Nasalis_muscle]
synonym: "musculus nasalis" RELATED LATIN [Wikipedia:Nasalis_muscle]
synonym: "nasalis" EXACT [FMA:46770]
xref: FMA:46770
xref: http://upload.wikimedia.org/wikipedia/commons/b/bb/Nasalis.png
xref: SCTID:244732001
is_a: UBERON:0008522 {source="FMA"} ! nasal muscle
relationship: has_muscle_insertion UBERON:0001681 {source="dbpedia"} ! nasal bone
relationship: has_muscle_origin UBERON:0002397 {source="dbpedia"} ! maxilla
[Term]
id: UBERON:0010954
name: ceratohyoideus muscle
def: "The ceratohyoideus is a muscle of Pharyngeal Arch III that participates in oral/pharyngeal behaviors and is innervated by the glossopharyngeal n. , and attaches to the ceratohyal part of the hyoid apparatus and also to a non-ceratohyal part of the hyoid apparatus.[FEED]" [http://www.feedexp.org]
synonym: "ceratohyoideus" EXACT [FEED:FEED]
property_value: UBPROP:0000001 "The ceratohyoideus is a muscle of Pharyngeal Arch III that participates in oral/pharyngeal behaviors and is innervated by the glossopharyngeal n. , and attaches to the ceratohyal part of the hyoid apparatus and also to a non-ceratohyal part of the hyoid apparatus.[FEED]" xsd:string
is_a: UBERON:0000933 ! pharyngeal muscle
[Term]
id: UBERON:0010955
name: trapezius pre-muscle mass
xref: EHDAA2:0002079
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
is_a: UBERON:0006904 ! head mesenchyme from mesoderm
is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest
relationship: develops_from UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle
[Term]
id: UBERON:0010956
name: pterygopharyngeal part of superior pharyngeal constrictor
synonym: "pars pterygopharyngea (musculus constrictor pharyngis superior)" EXACT [FMA:46638]
synonym: "pterygopharyngeal part of superior constrictor pharyngeus" EXACT [FMA:46638]
synonym: "pterygopharyngeus" RELATED []
xref: FMA:46638
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0006329 {source="FMA"} ! superior pharyngeal constrictor
[Term]
id: UBERON:0010958
name: arytenoid muscle
def: "A single muscle, filling up the posterior concave surfaces of the arytenoid cartilages. It arises from the posterior surface and lateral border of one arytenoid cartilage, and is inserted into the corresponding parts of the opposite cartilage. It consists of oblique and transverse parts." [Wikipedia:Arytenoid_muscle]
comment: todo - check child relationships
synonym: "aryepiglotticus muscle" RELATED [Wikipedia:Arytenoid_muscle]
synonym: "arytaenoideus" RELATED [Wikipedia:Arytenoid_muscle]
synonym: "arytaenoideus muscle" RELATED [Wikipedia:Arytenoid_muscle]
synonym: "Arytænoideus" RELATED LATIN [Wikipedia:Arytenoid_muscle]
xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png
xref: ncithesaurus:Arytenoid_Muscle
is_a: UBERON:0006328 ! laryngeal intrinsic muscle
relationship: has_muscle_insertion UBERON:0001740 {source="dbpedia", notes="Arytenoid cartilage on opposite side"} ! arytenoid cartilage
relationship: has_muscle_nerve UBERON:0003716 {notes="recurrent laryngeal branch of the vagus", source="dbpedia"} ! recurrent laryngeal nerve
relationship: has_muscle_origin UBERON:0001740 {source="dbpedia", notes="Arytenoid cartilage on one side"} ! arytenoid cartilage
[Term]
id: UBERON:0010959
name: craniocervical muscle
synonym: "muscle of head and neck" RELATED []
synonym: "muscle of head or neck" EXACT []
xref: ncithesaurus:Head_and_Neck_Muscle
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0007811
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0007811 ! craniocervical region
relationship: part_of UBERON:0007811 ! craniocervical region
[Term]
id: UBERON:0010961
name: erector spinae pre-muscle mass
xref: EHDAA2:0000455
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle
[Term]
id: UBERON:0010962
name: extensor pre-muscle mass
xref: EHDAA2:0000459
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
[Term]
id: UBERON:0010963
name: trunk and cervical myotome group
comment: isa row in EHDAA2
xref: EHDAA2:0003425
is_a: UBERON:0003082 ! myotome
relationship: part_of UBERON:0005256 {source="EHDAA2"} ! trunk mesenchyme
[Term]
id: UBERON:0010970
name: intercostal pre-muscle mass
xref: EHDAA2:0000843
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle
[Term]
id: UBERON:0010974
name: external intercostal pre-muscle mass
xref: EHDAA2:0000467
is_a: UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass
[Term]
id: UBERON:0010975
name: external oblique pre-muscle mass
xref: EHDAA2:0000470
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme
relationship: part_of UBERON:0002461 {source="EHDAA2"} ! anterior abdominal wall muscle
[Term]
id: UBERON:0010977
name: flexor pre-muscle mass
xref: EHDAA2:0000543
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
[Term]
id: UBERON:0010981
name: internal intercostal pre-muscle mass
xref: EHDAA2:0000876
is_a: UBERON:0010970 {source="EHDAA2"} ! intercostal pre-muscle mass
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
[Term]
id: UBERON:0010982
name: latissimus dorsi pre-muscle mass
xref: EHDAA2:0000933
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle
[Term]
id: UBERON:0010983
name: levator scapulae pre-muscle mass
xref: EHDAA2:0000993
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle
[Term]
id: UBERON:0010984
name: pectoral pre-muscle mass
xref: EHDAA2:0001423
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle
[Term]
id: UBERON:0010985
name: rhomboid pre-muscle mass
xref: EHDAA2:0001636
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle
[Term]
id: UBERON:0010986
name: serratus anterior pre-muscle mass
xref: EHDAA2:0001833
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0003897 {source="EHDAA2"} ! axial muscle
[Term]
id: UBERON:0010987
name: sterno-mastoid pre-muscle mass
xref: EHDAA2:0001913
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0006904 {source="EHDAA2"} ! head mesenchyme from mesoderm
relationship: part_of UBERON:0002376 {source="EHDAA2"} ! muscle of head
[Term]
id: UBERON:0010988
name: teres major pre-muscle mass
xref: EHDAA2:0002005
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle
[Term]
id: UBERON:0010989
name: transverospinalis pre-muscle mass
xref: EHDAA2:0002076
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
[Term]
id: UBERON:0010990
name: transversospinales muscle
def: "The transversospinal muscles are a group of muscles of the human back. Their combined action is rotation and extension of the vertebral column. They include: semispinalis, spanning 4-6 vertebral segments semispinalis dorsi semispinalis cervicis semispinalis capitis multifidus, spanning 2-4 vertebral segments rotatores, spanning 1-2 vertebral segments rotatores cervicis rotatores thoracis rotatores lumborum" [Wikipedia:Transversospinales_muscles]
synonym: "deep dorsal muscles" RELATED [Wikipedia:Transversospinales_muscles]
synonym: "musculi transversospinales" RELATED [FMA:TA]
synonym: "musculi transversospinales" RELATED LATIN [Wikipedia:Transversospinales_muscles]
synonym: "transverospinalis" EXACT [EHDAA2:0002075]
synonym: "transversospinal group of muscles" RELATED [Wikipedia:Transversospinales_muscles]
synonym: "transversospinales" RELATED [FMA:71304]
synonym: "transversospinales muscle group" RELATED [FMA:71304]
xref: EHDAA2:0002075
xref: EHDAA:9465
xref: FMA:71304
xref: http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png
xref: SCTID:244866002
is_a: UBERON:0003897 {source="EHDAA2"} ! axial muscle
relationship: develops_from UBERON:0010989 {source="EHDAA2"} ! transverospinalis pre-muscle mass
[Term]
id: UBERON:0010993
name: subscapularis pre-muscle mass
xref: EMAPA:17750
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005865 ! pre-muscle condensation
relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group
[Term]
id: UBERON:0010994
name: coronoid process of ulna
def: "The coronoid process is a triangular eminence projecting forward from the upper and front part of the ulna. Its base is continuous with the body of the bone, and of considerable strength. Its apex is pointed, slightly curved upward, and in flexion of the forearm is received into the coronoid fossa of the humerus. Its upper surface is smooth, concave, and forms the lower part of the semilunar notch. Its antero-inferior surface is concave, and marked by a rough impression for the insertion of the Brachialis muscle. At the junction of this surface with the front of the body is a rough eminence, the tuberosity of the ulna, which gives insertion to a part of the Brachialis; to the lateral border of this tuberosity the oblique cord is attached. Its lateral surface presents a narrow, oblong, articular depression, the radial notch. Its medial surface, by its prominent, free margin, serves for the attachment of part of the ulnar collateral ligament. At the front part of this surface is a small rounded eminence for the origin of one head of the Flexor digitorum superficialis muscle; behind the eminence is a depression for part of the origin of the Flexor digitorum profundus muscle; descending from the eminence is a ridge which gives origin to one head of the Pronator teres muscle. Frequently, the Flexor pollicis longus muscle arises from the lower part of the coronoid process by a rounded bundle of muscular fibers." [Wikipedia:Coronoid_process_of_the_ulna]
synonym: "coronoid process" BROAD [FMA:23616]
synonym: "coronoid process of the ulna" EXACT [Wikipedia:Coronoid_process_of_the_ulna]
synonym: "processus coronoideus" EXACT [FMA:23616]
synonym: "processus coronoideus ulnae" RELATED LATIN [Wikipedia:Coronoid_process_of_the_ulna]
synonym: "ulnar coronoid process" EXACT []
xref: FMA:23616
xref: http://upload.wikimedia.org/wikipedia/commons/6/60/Gray212.png
xref: SCTID:181951002
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004529 {source="FMA"} ! anatomical projection
relationship: part_of UBERON:0006822 {source="FMA"} ! proximal epiphysis of ulna
[Term]
id: UBERON:0010995
name: deep part of masseter muscle
synonym: "deep layer of masseter" EXACT [FMA:49003]
synonym: "deep part of masseter" EXACT [FMA:49003]
synonym: "masseter, deep" EXACT []
synonym: "masseter, profundus" EXACT [FEED:FEED]
synonym: "pars profunda (musculus masseter)" EXACT [FMA:49003]
synonym: "pars profunda of masseter muscle" EXACT []
xref: FMA:49003
xref: SCTID:142309002
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: in_deep_part_of UBERON:0001597 ! masseter muscle
[Term]
id: UBERON:0010996
name: articular cartilage of joint
def: "A thin layer of cartilage, usually hyaline, on the articular surface of bones in synovial joints." [BTO:0001572]
subset: uberon_slim
subset: vertebrate_core
synonym: "articular cartilage" EXACT [MA:0000487]
synonym: "cartilago articularis" EXACT [FMA:12264]
synonym: "hyaline cartilage" RELATED [BTO:0001572]
xref: BTO:0001572
xref: EFO:0001902
xref: FMA:12264
xref: GAID:101
xref: galen:ArticularCartilage
xref: MA:0000487
xref: MESH:A.02.165.165
xref: ncithesaurus:Articular_Cartilage
xref: SCTID:305026006
is_a: UBERON:0001994 {source="MA"} ! hyaline cartilage
disjoint_from: UBERON:0011002 ! articular cartilage condensation
relationship: part_of UBERON:0002217 {source="Wikipedia"} ! synovial joint
[Term]
id: UBERON:0011002
name: articular cartilage condensation
synonym: "articular cartilages" BROAD PLURAL [ZFA:0001644]
xref: TAO:0001670
xref: ZFA:0001644
is_a: UBERON:0011004 {source="ZFA"} ! pharyngeal arch cartilage
[Term]
id: UBERON:0011004
name: pharyngeal arch cartilage
synonym: "pharyngeal arch cartilages" EXACT PLURAL [ZFA:0001460]
synonym: "splanchnocranium cartilage" EXACT [ZFA:0001460]
xref: TAO:0001460
xref: ZFA:0001460
is_a: UBERON:0003933 {source="ZFA"} ! cranial cartilage
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0008895
intersection_of: UBERON:0007844 ! cartilaginous element
intersection_of: part_of UBERON:0008895 ! splanchnocranium
relationship: part_of UBERON:0008895 {source="ZFA"} ! splanchnocranium
relationship: part_of UBERON:0008895 ! splanchnocranium
[Term]
id: UBERON:0011005
name: endocardium of auricle
comment: Note in EHDAA2 this is an epithelium that is part of the endocardium
synonym: "auricle endocardium" EXACT [FMA:13234]
xref: FMA:13234
is_a: UBERON:0002166 ! endocardium of atrium
relationship: part_of UBERON:0006618
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0006618 ! atrium auricular region
relationship: part_of UBERON:0006618 ! atrium auricular region
[Term]
id: UBERON:0011006
name: endocardium of left auricle
synonym: "left atrium auricular region endocardium" EXACT [EHDAA2:0000277]
synonym: "left auricle endocardium" EXACT [FMA:13236]
xref: EHDAA2:0000277
xref: FMA:13236
xref: VHOG:0001231
is_a: UBERON:0011005 ! endocardium of auricle
relationship: part_of UBERON:0006630
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0006630 ! left atrium auricular region
relationship: part_of UBERON:0006630 ! left atrium auricular region
[Term]
id: UBERON:0011007
name: endocardium of right auricle
synonym: "right auricle endocardium" EXACT [FMA:13235]
xref: EHDAA2:0000292
xref: FMA:13235
is_a: UBERON:0009129 ! right atrium endocardium
is_a: UBERON:0011005 ! endocardium of auricle
relationship: part_of UBERON:0006631
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0006631 ! right atrium auricular region
relationship: part_of UBERON:0006631 ! right atrium auricular region
[Term]
id: UBERON:0011011
name: brachioradialis
def: "Brachioradialis is a muscle of the forearm that acts to flex the forearm at the elbow. It is also capable of both pronation and supination, depending on the position of the forearm; for this reason it is also called \"the beer drinker muscle. \" It is attached to the distal styloid process of the radius by way of the brachioradialis tendon, and to the lateral supracondylar ridge of the humerus." [Wikipedia:Brachioradialis]
synonym: "brachioradialis muscle" RELATED [Wikipedia:Brachioradialis]
synonym: "musculus brachioradialis" RELATED LATIN [Wikipedia:Brachioradialis]
xref: FMA:38485
xref: http://upload.wikimedia.org/wikipedia/commons/9/92/Brachioradialis.png
xref: SCTID:244989009
is_a: UBERON:0001499 ! muscle of arm
relationship: has_muscle_insertion UBERON:0001423 {notes="Distal radius", source="dbpedia"} ! radius bone
relationship: has_muscle_nerve UBERON:0001492 {source="dbpedia"} ! radial nerve
relationship: has_muscle_origin UBERON:0000976 {source="dbpedia", notes="Lateral supracondylar ridge of the humerus"} ! humerus
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0011012
name: flexor pollicis brevis muscle
def: "The flexor pollicis brevis is a muscle in the hand that flexes the thumb. It is one of three thenar muscles. It has both a superficial part and a deep part." [Wikipedia:Flexor_pollicis_brevis_muscle]
synonym: "flexor pollicis brevis" EXACT [FMA:37378]
synonym: "musculus flexor pollicis brevis" RELATED LATIN [Wikipedia:Flexor_pollicis_brevis_muscle]
xref: FMA:37378
xref: http://upload.wikimedia.org/wikipedia/commons/c/ca/Musculusflexorpollicisbrevis.png
xref: SCTID:181646006
is_a: UBERON:0001500 ! muscle of hand
relationship: has_muscle_antagonist UBERON:0003234 {source="dbpedia", notes="Extensor pollicis longus and brevis"} ! extensor pollicis longus muscle
relationship: has_muscle_insertion UBERON:0001463 {source="dbpedia"} ! hand digit 1
relationship: has_muscle_insertion UBERON:0004302 {source="dbpedia"} ! proximal phalanx
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0011013
name: spinalis muscle
def: "The spinalis is the portion of the erector spinae, a bundle of muscles and tendons, located nearest to the spine. It is divided into three parts. [WP,unvetted]." [Wikipedia:Spinalis]
synonym: "medial column of erector spinae" RELATED []
synonym: "musculus spinalis" RELATED [Wikipedia:Spinalis]
synonym: "musculus spinalis" RELATED LATIN [Wikipedia:Spinalis]
synonym: "spinal muscle" EXACT [BTO:0002621]
synonym: "spinalis" EXACT [FMA:77179]
synonym: "spinalis muscle" RELATED [Wikipedia:Spinalis]
xref: BTO:0002621
xref: FMA:77179
xref: http://upload.wikimedia.org/wikipedia/commons/a/a4/Spinalis.png
xref: SCTID:244862000
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column
relationship: has_muscle_insertion UBERON:0001076 {notes="spinous process Thoracis: SP of upper thoracic vertebrae. Cervicis: SP of cervical vertebrae except C1.", source="dbpedia"} ! spinous process of vertebra
relationship: has_muscle_insertion UBERON:0001092 {notes="spinous process Thoracis: SP of upper thoracic vertebrae. Cervicis: SP of cervical vertebrae except C1.", source="dbpedia"} ! first cervical vertebra
relationship: has_muscle_nerve UBERON:0006839 {source="dbpedia"} ! posterior ramus of spinal nerve
relationship: has_muscle_origin UBERON:0001076 {source="dbpedia", notes="spinous process Thoracis: Upper lumbar and lower thoracic vertebrae. Cervicis: Ligamentum nuchae and spinous process of C7."} ! spinous process of vertebra
relationship: has_muscle_origin UBERON:0004616 {source="dbpedia", notes="spinous process Thoracis: Upper lumbar and lower thoracic vertebrae. Cervicis: Ligamentum nuchae and spinous process of C7."} ! mammalian cervical vertebra 7
relationship: part_of UBERON:0002462 {source="BTO"} ! erector spinae muscle group
[Term]
id: UBERON:0011014
name: spinalis capitis muscle
def: "Origin: spines of upper thoracic and lower cervical vertebrae; insertion: occipital bone; innervation: spinal nerves; action, extends head." [BTO:0002622]
synonym: "spinal muscle of head" EXACT [BTO:0002622]
synonym: "spinalis capitis" EXACT [FMA:22775]
xref: BTO:0002622
xref: FMA:22775
xref: SCTID:244865003
is_a: UBERON:0011013 {source="FMA"} ! spinalis muscle
relationship: has_muscle_insertion UBERON:0003129 ! skull
[Term]
id: UBERON:0011015
name: iliac fossa
xref: FMA:75316
xref: SCTID:182341009
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001273 ! ilium
[Term]
id: UBERON:0011016
name: pyramidalis
def: "The pyramidalis is a small and triangular muscle, anterior to the Rectus abdominis, and contained in the rectus sheath." [Wikipedia:Pyramidalis_muscle]
synonym: "musculus pyramidalis" RELATED LATIN [Wikipedia:Pyramidalis_muscle]
synonym: "pyramidalis" RELATED [Wikipedia:Pyramidalis_muscle]
synonym: "pyramidalis muscle" EXACT [FMA:15568]
xref: FMA:15568
xref: http://upload.wikimedia.org/wikipedia/commons/9/91/Gray397.png
xref: ncithesaurus:Pyramidalis
xref: SCTID:244950003
is_a: UBERON:0002461 {source="FMA"} ! anterior abdominal wall muscle
relationship: has_muscle_origin UBERON:0003699 {source="dbpedia", notes="pubic symphysis and pubic crest"} ! pubic symphysis
[Term]
id: UBERON:0011017
name: semispinalis muscle
def: "a transversospinalis muscle of the human body." [Wikipedia:Semispinalis_muscle]
synonym: "semispinalis" EXACT [Wikipedia:Semispinalis_muscle]
xref: FMA:22823
xref: SCTID:244867006
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column
[Term]
id: UBERON:0011022
name: flexor hallucis brevis
def: "The Flexor hallucis brevis arises, by a pointed tendinous process, from the medial part of the under surface of the cuboid bone, from the contiguous portion of the third cuneiform, and from the prolongation of the tendon of the Tibialis posterior which is attached to that bone. It divides in front into two portions, which are inserted into the medial and lateral sides of the base of the first phalanx of the great toe, a sesamoid bone being present in each tendon at its insertion. The medial portion is blended with the Abductor hallucis previous to its insertion; the lateral portion with the Adductor hallucis; the tendon of the Flexor hallucis longus lies in a groove between them; the lateral portion is sometimes described as the first Interosseous plantaris." [Wikipedia:Flexor_hallucis_brevis_muscle]
synonym: "flexor hallucis brevis muscle" EXACT [Wikipedia:Flexor_hallucis_brevis_muscle]
synonym: "m.flexor hallucis brevis" EXACT [FMA:37449]
synonym: "musculus flexor hallucis brevis" RELATED LATIN [Wikipedia:Flexor_hallucis_brevis_muscle]
xref: FMA:37449
xref: http://upload.wikimedia.org/wikipedia/commons/5/58/Musculus_flexor_hallucis_brevis.png
xref: SCTID:181730007
is_a: UBERON:0000366 ! flexor muscle
is_a: UBERON:0001498 ! muscle of foot
relationship: has_muscle_insertion UBERON:0001479 {notes="medial and lateral sesamoid bones of first metatarsal", source="dbpedia"} ! sesamoid bone
relationship: has_muscle_insertion UBERON:0003650 {notes="medial and lateral sesamoid bones of first metatarsal", source="dbpedia"} ! metatarsal bone of digit 1
relationship: has_muscle_origin UBERON:0010721 {source="dbpedia", notes="plantar surface of cuneiform bones"} ! distal tarsal bone
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0011024
name: extrinsic extensor muscle of hand
def: "The extrinsic extensor muscles of the hand are located in the back of the forearm and have long tendons connecting them to bones in the hand, where they exert their action." [Wikipedia:Extrinsic_extensor_muscles_of_the_hand]
is_a: UBERON:0000311 ! extensor muscle
is_a: UBERON:0004254 ! forelimb zeugopod muscle
relationship: has_muscle_insertion UBERON:0005897
relationship: part_of UBERON:0002386
intersection_of: UBERON:0000311 ! extensor muscle
intersection_of: has_muscle_insertion UBERON:0005897 ! hand bone
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
relationship: has_muscle_insertion UBERON:0005897 ! hand bone
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0011025
name: aryepiglotticus muscle
def: "The aryepiglotticus is a muscle of the larynx running in the aryepiglottic fold from the arytenoid cartilage to the epiglottis." [Wikipedia:Aryepiglottic_muscle]
synonym: "ary-epiglottic part of oblique arytenoid" EXACT [FMA:46602]
synonym: "aryepiglottic" EXACT []
synonym: "aryepiglottic muscle" EXACT [FMA:46602]
synonym: "aryepiglottic muscle" EXACT []
synonym: "aryepiglotticus" EXACT [Wikipedia:Aryepiglottic_muscle]
synonym: "aryepiglottus" EXACT [FEED:FEED]
synonym: "aryepiglottus muscle" EXACT [FEED:FEED]
synonym: "musculus aryepiglotticus" RELATED LATIN [Wikipedia:Aryepiglottic_muscle]
synonym: "pars aryepiglottica (musculus arytenoideus obliquus)" EXACT [FMA:46602]
synonym: "pars aryepiglottica musculi arytenoidei obliqui" RELATED LATIN [Wikipedia:Aryepiglottic_muscle]
synonym: "pars aryepiglottica musculus arytenoidei obliqui" EXACT [FMA:TA]
xref: FMA:46602
xref: http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png
xref: ncithesaurus:Aryepiglottic_Muscle
xref: SCTID:244818009
is_a: UBERON:0001568 {source="ncithesaurus"} ! muscle of larynx
relationship: has_muscle_insertion UBERON:0000388 ! epiglottis
relationship: has_muscle_origin UBERON:0001740 ! arytenoid cartilage
relationship: part_of UBERON:0008575 {source="FMA"} ! oblique arytenoid
[Term]
id: UBERON:0011043
name: obturator muscle
def: "One of: obturator externus or obturator internus" [Wikipedia:Obturator_muscles]
xref: FMA:19083
xref: ncithesaurus:Obturator_Muscle
xref: SCTID:245024007
is_a: UBERON:0002000 {source="FMA"} ! gluteal muscle
[Term]
id: UBERON:0011048
name: obturator internus
def: "The obturator internus muscle originates on the medial surface of the obturator membrane, the ischium near the membrane, and the rim of the pubis. It exits the pelvic cavity through the lesser sciatic foramen. The obturator internus is situated partly within the lesser pelvis, and partly at the back of the hip-joint. It functions to help laterally rotate extended thigh and abduct flexed thigh, as well as to steady the femoral head in the acetabulum." [Wikipedia:Obturator_internus_muscle]
comment: Definition generalized to accommodate AAO class - "Originates on the entire lateral surface of the pelvic rim. Dorsal fibers insert distally to the dorso-medial surface of the caput femoris and ventral fibers extend around the acetabulum to insert on the tendon of the caput femoris." [AAO:0010052]
synonym: "internal obturator" EXACT [FMA:22298]
synonym: "internus obturator" RELATED [Wikipedia:Obturator_internus_muscle]
synonym: "musculus obturator internus" EXACT [FMA:22298]
synonym: "musculus obturatorius internus" RELATED LATIN [Wikipedia:Obturator_internus_muscle]
synonym: "obturator internus muscle" RELATED [Wikipedia:Obturator_internus_muscle]
synonym: "obturatorius internus" RELATED [Wikipedia:Obturator_internus_muscle]
xref: AAO:0010052
xref: FMA:22298
xref: http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG
xref: ncithesaurus:Obturator_Internus_Muscle
xref: SCTID:245025008
property_value: UBPROP:0000001 "Originates on the entire lateral surface of the pelvic rim. Dorsal fibers insert distally to the dorso-medial surface of the caput femoris and ventral fibers extend around the acetabulum to insert on the tendon of the caput femoris.[AAO]" xsd:string
is_a: UBERON:0011043 {source="FMA"} ! obturator muscle
relationship: attaches_to UBERON:0002503 {source="FMA"} ! greater trochanter
relationship: has_muscle_insertion UBERON:0002503 {source="dbpedia", notes="medial aspect of the Greater trochanter"} ! greater trochanter
relationship: part_of UBERON:0004470 {source="FMA"} ! musculature of pelvic girdle
[Term]
id: UBERON:0011049
name: uterovesical pouch
def: "The peritoneum over the rectum and the bladder is continued over the intestinal surface and fundus of the uterus on to its vesical surface, which it covers as far as the junction of the body and cervix uteri, and then to the bladder, forming here a second, but shallower, pouch, the vesicouterine excavation (or uterovesical pouch). The vesicouterine excavation is close to the anterior fornix of the vagina." [Wikipedia:Vesico-uterine_pouch]
synonym: "excavatio vesico-uterina" EXACT [FMA:14729]
synonym: "excavatio vesicouterina" EXACT [FMA:TA]
synonym: "excavatio vesicouterina" RELATED LATIN [Wikipedia:Vesico-uterine_pouch]
synonym: "excavatio vesiocuterina" RELATED [Wikipedia:Vesico-uterine_pouch]
synonym: "vesico-uterine pouch" EXACT [FMA:14729]
synonym: "vesicouterine" RELATED [Wikipedia:Vesico-uterine_pouch]
synonym: "vesicouterine excavation" RELATED [Wikipedia:Vesico-uterine_pouch]
synonym: "vesicouterine pouch" EXACT [FMA:14729]
synonym: "vesicouterine pouch" RELATED [Wikipedia:Vesico-uterine_pouch]
xref: FMA:14729
xref: http://upload.wikimedia.org/wikipedia/commons/5/51/WeiblichesBeckenMedian.gif
xref: ncithesaurus:Utero-Vesical_Pouch
xref: SCTID:249806003
is_a: UBERON:0000158 ! membranous layer
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002358 ! peritoneum
[Term]
id: UBERON:0011050
name: thoracic vertebra 8
synonym: "eighth dorsal vertebra" EXACT [FMA:9991]
synonym: "eighth thoracic vertebra" EXACT [FMA:9991]
synonym: "T8 vertebra" EXACT [FMA:9991]
xref: EMAPA:19549
xref: FMA:9991
xref: MA:0001445
xref: ncithesaurus:T8_Vertebra
xref: SCTID:181836007
is_a: UBERON:0002347 {source="MA"} ! thoracic vertebra
relationship: anteriorly_connected_to UBERON:0004632 {source="FMA"} ! thoracic vertebra 7
[Term]
id: UBERON:0011060
name: perilymphatic channel
def: "A channel containing perilymph passing through the temporal bone, connecting the scala tympani of the cochlea to the subarachnoid space." [MESH:A.09.246.631.246.280, Wikipedia:Perilymphatic_duct]
comment: Editor notes: relationship to FMA class unclear
synonym: "cochlear aqueduct" RELATED [MESH:A.09.246.631.246.280]
synonym: "ductus perilymphaticus" EXACT [AAO:0000136]
synonym: "perilymphatic duct" RELATED [MESH:A.09.246.631.246.280]
synonym: "perilymphatic space" RELATED [MA:0000248]
xref: AAO:0000136
xref: FMA:77822
xref: MA:0000248
xref: SCTID:368950002
xref: ZFA:0005461
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001846 {source="MA"} ! internal ear
relationship: surrounds UBERON:0001845 ! perilymph
[Term]
id: UBERON:0011078
name: endolymphatic space
xref: FMA:77823
xref: SCTID:279856000
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001846 ! internal ear
relationship: surrounded_by UBERON:0001849 {source="Wikipedia"} ! membranous labyrinth
[Term]
id: UBERON:0011079
name: angular bone
def: "Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone." [TAO:0001669, Wikipedia:Angular_bone]
comment: The angular fuses with the articular bone in clupeocephalans forming the anguloarticular.
synonym: "angular" BROAD [AAO:0000010]
synonym: "postoperculare" RELATED [AAO:0000010]
synonym: "praearticulare" RELATED [AAO:0000010]
xref: AAO:0000010
xref: TAO:0001669
xref: ZFA:0001645
is_a: UBERON:0004768 ! bone of lower jaw
is_a: UBERON:0008907 {source="TAO"} ! dermal bone
relationship: part_of UBERON:0003113 {source="Kardong", notes="mandibular series"} ! dermatocranium
relationship: part_of UBERON:0003278 {source="AAO"} ! skeleton of lower jaw
[Term]
id: UBERON:0011085
name: dorsal pharyngeal arch 1
def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [VHOG:0000511]
synonym: "dorsal mandibular arch" RELATED [VHOG:0000511]
synonym: "dorsal visceral arch 1" EXACT [ZFA:0001272]
synonym: "dorsal visceral arch 1" RELATED [VHOG:0000511]
synonym: "palatoquadrate arch" RELATED [VHOG:0000511]
synonym: "upper jaw" RELATED [VHOG:0000511]
synonym: "upper pharyngeal jaw" EXACT [ZFA:0001272]
synonym: "upper pharyngeal jaw" RELATED [VHOG:0000511]
xref: EFO:0003659
xref: TAO:0001272
xref: VHOG:0000511
xref: ZFA:0001272
is_a: UBERON:0000477 {source="ZFA"} ! anatomical cluster
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0003277 ! skeleton of upper jaw
relationship: part_of UBERON:0004362 {source="VHOG"} ! pharyngeal arch 1
relationship: part_of UBERON:0008895 {source="VHOG"} ! splanchnocranium
[Term]
id: UBERON:0011087
name: pharyngeal arch 7
synonym: "branchial arch 5" RELATED [ZFA:0001610]
synonym: "gill arch 5" EXACT [ZFA:0001610]
synonym: "visceral arch 7" EXACT [ZFA:0001610]
xref: TAO:0001602
xref: ZFA:0001610
property_value: "pharyngeal_arch_number" "7" xsd:nonNegativeInteger
is_a: UBERON:0008896 {source="ZFA"} ! post-hyoid pharyngeal arch
[Term]
id: UBERON:0011088
name: ligament of knee joint
synonym: "knee joint ligament" EXACT [FMA:44580]
xref: FMA:44580
xref: SCTID:182440009
is_a: UBERON:0003577 ! knee connective tissue
is_a: UBERON:0008846 ! skeletal ligament
relationship: part_of UBERON:0001485
intersection_of: UBERON:0000211 ! ligament
intersection_of: part_of UBERON:0001485 ! knee joint
relationship: part_of UBERON:0001485 ! knee joint
[Term]
id: UBERON:0011090
name: skeleton of right pelvic girdle
xref: FMA:87593
is_a: UBERON:0007832 ! skeleton of pelvic girdle
relationship: part_of UBERON:0011092
intersection_of: UBERON:0007832 ! skeleton of pelvic girdle
intersection_of: part_of UBERON:0011092 ! right pelvic girdle region
relationship: part_of UBERON:0011092 ! right pelvic girdle region
[Term]
id: UBERON:0011091
name: skeleton of left pelvic girdle
xref: FMA:87594
is_a: UBERON:0007832 ! skeleton of pelvic girdle
relationship: part_of UBERON:0011093
intersection_of: UBERON:0007832 ! skeleton of pelvic girdle
intersection_of: part_of UBERON:0011093 ! left pelvic girdle region
relationship: part_of UBERON:0011093 ! left pelvic girdle region
[Term]
id: UBERON:0011092
name: right pelvic girdle region
synonym: "right pelvic girdle" EXACT INCONSISTENT [FMA:16582]
xref: FMA:16582
is_a: UBERON:0001271 ! pelvic girdle region
relationship: in_right_side_of UBERON:0000468
intersection_of: UBERON:0001271 ! pelvic girdle region
intersection_of: in_right_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_right_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0011093
name: left pelvic girdle region
synonym: "left pelvic girdle" EXACT INCONSISTENT [FMA:16583]
xref: FMA:16583
is_a: UBERON:0001271 ! pelvic girdle region
relationship: in_left_side_of UBERON:0000468
intersection_of: UBERON:0001271 ! pelvic girdle region
intersection_of: in_left_side_of UBERON:0000468 ! multi-cellular organism
relationship: in_left_side_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0011094
name: vertebra cartilaginous condensation
comment: AO notes: This class is a superclass of individual vertebral cartilage condensations. Note that EHDAA2 represents these as condensation groups
synonym: "vertebral cartilage condensation" EXACT [VHOG:0000584]
xref: VHOG:0000584
is_a: UBERON:0005863 ! cartilaginous condensation
is_a: UBERON:0010913 ! vertebral element
relationship: part_of UBERON:0001130
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: part_of UBERON:0001130 ! vertebral column
relationship: develops_from UBERON:0011095 ! vertebra pre-cartilage condensation
relationship: develops_into UBERON:0002412 ! vertebra
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0011095
name: vertebra pre-cartilage condensation
synonym: "vertebral pre-cartilage condensation" EXACT [VHOG:0000582]
xref: VHOG:0000582
is_a: UBERON:0005866 ! pre-cartilage condensation
relationship: part_of UBERON:0001130
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: part_of UBERON:0001130 ! vertebral column
relationship: develops_into UBERON:0002412 ! vertebra
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0011096
name: lacrimal nerve
def: "The lacrimal nerve is the smallest of the three branches of the ophthalmic division of the trigeminal nerve." [Wikipedia:Lacrimal_nerve]
xref: FMA:52628
xref: http://upload.wikimedia.org/wikipedia/commons/4/45/Gray787.png
xref: SCTID:280218007
is_a: UBERON:0002003 {source="ncithesaurus"} ! peripheral nerve
relationship: branch_of UBERON:0000348 {source="FMA"} ! ophthalmic nerve
[Term]
id: UBERON:0011104
name: epiphysis of fifth metacarpal bone
synonym: "fifth metacarpal bone epiphysis" EXACT [FMA:86330]
synonym: "metacarpal 5 epiphysis" EXACT []
xref: FMA:86330
is_a: UBERON:0004390 ! epiphysis of metacarpal bone
relationship: part_of UBERON:0003649
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003649 ! metacarpal bone of digit 5
relationship: part_of UBERON:0003649 ! metacarpal bone of digit 5
[Term]
id: UBERON:0011106
name: cruciate ligament of atlas
def: "a cruciate ligament in the neck forming part of the atlanto-axial joint. It consists of the transverse ligament of the atlas, along with additional fibers above and below." [Wikipedia:Cruciate_ligament_of_the_dens]
synonym: "cruciate ligament of dens" EXACT [Wikipedia:Cruciate_ligament_of_the_dens]
synonym: "cruciform ligament of atlas" EXACT [FMA:25018]
synonym: "cruciform ligament of dens" EXACT [Wikipedia:Cruciate_ligament_of_the_dens]
synonym: "ligamentum cruciforme atlantis" EXACT LATIN [Wikipedia:Cruciate_ligament_of_the_dens]
synonym: "triradiate ligament" RELATED [EMAPA:19010]
xref: EMAPA:19010
xref: FMA:25018
xref: SCTID:182362005
is_a: UBERON:0000211 ! ligament
relationship: part_of UBERON:0000220 {source="FMA", inconsistent_with="Wikipedia"} ! atlanto-occipital joint
[Term]
id: UBERON:0011107
name: synovial joint of pelvic girdle
synonym: "joint of pelvic girdle" EXACT []
synonym: "pelvic girdle joint" EXACT [FMA:35173]
xref: FMA:35173
xref: ncithesaurus:Joint_of_the_Pelvic_Girdle
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0008114 ! joint of girdle
relationship: part_of UBERON:0001271
intersection_of: UBERON:0002217 ! synovial joint
intersection_of: part_of UBERON:0001271 ! pelvic girdle region
relationship: connects UBERON:0007830 ! pelvic girdle bone/zone
relationship: part_of UBERON:0001271 ! pelvic girdle region
[Term]
id: UBERON:0011108
name: synovial joint of pectoral girdle
comment: AO notes: in FMA, these are part of the bony pectoral girdle
synonym: "pectoral girdle joint" EXACT [FMA:35243]
xref: FMA:35243
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0008114 ! joint of girdle
relationship: part_of UBERON:0001421
intersection_of: UBERON:0002217 ! synovial joint
intersection_of: part_of UBERON:0001421 ! pectoral girdle region
relationship: connects UBERON:0007829 ! pectoral girdle bone
relationship: part_of UBERON:0001421 ! pectoral girdle region
[Term]
id: UBERON:0011110
name: humeroulnar joint
def: "The humeroulnar joint, is part of the elbow-joint or the Olecron Joint, between the ulna and humerus bones is the simple hinge-joint, which allows for movements of flexion, extension and circumduction. The Humero-Ulnar Joint is the junction of trochlear notch of the ulna and the trochlea of the humerus. Owing to the obliquity of the trochlea of the humerus, this movement does not take place in the antero-posterior plane of the body of the humerus. When the forearm is extended and supinated, the axis of the arm and forearm are not in the same line; the arm forms an obtuse angle with the forearm. During flexion, however, the forearm and the hand tend to approach the middle line of the body, and thus enable the hand to be easily carried to the face. The accurate adaptation of the trochlea of the humerus, with its prominences and depressions, to the semilunar notch of the ulna, prevents any lateral movement. Flexion is produced by the action of the Biceps brachii and Brachialis, assisted by the Brachioradialis, with a tiny contribution from the muscles arising from the medial epicondyle of the humerus. Extension is produced by the Triceps brachii and AnconC&us, with a tiny contribution from the muscles arising from the lateral epicondyle of the humerus, such as the Extensor digitorum communis." [Wikipedia:Humeroulnar_joint]
synonym: "articulatio humeroulnaris" EXACT LATIN [FMA:TA]
synonym: "humero-ulnar joint" EXACT [FMA:38854]
xref: FMA:38854
xref: http://upload.wikimedia.org/wikipedia/commons/9/97/Gray329.png
xref: SCTID:303064006
is_a: UBERON:0003839 ! forelimb joint
is_a: UBERON:0011139 ! synovial limb joint
relationship: connects UBERON:0000976
relationship: connects UBERON:0001424
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0000976 ! humerus
intersection_of: connects UBERON:0001424 ! ulna
relationship: connects UBERON:0000976 ! humerus
relationship: connects UBERON:0001424 ! ulna
relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint
[Term]
id: UBERON:0011111
name: humeroradial joint
def: "The humeroradial joint, the joint between the head of the radius and the capitulum of the humerus, is a hinge joint. The bony surfaces would of themselves constitute an enarthrosis and allow movement in all directions, were it not for the annular ligament, by which the head of the radius is bound to the radial notch of the ulna, and which prevents any separation of the two bones laterally. It is to the same ligament that the head of the radius owes its security from dislocation, which would otherwise tend to occur, from the shallowness of the cup-like surface on the head of the radius. In fact, but for this ligament, the tendon of the Biceps brachii would be liable to pull the head of the radius out of the joint. The head of the radius is not in complete contact with the capitulum of the humerus in all positions of the joint. The capitulum occupies only the anterior and inferior surfaces of the lower end of the humerus, so that in complete extension a part of the radial head can be plainly felt projecting at the back of the articulation. In full flexion the movement of the radial head is hampered by the compression of the surrounding soft parts, so that the freest rotatory movement of the radius on the humerus (pronation and supination) takes place in semiflexion, in which position the two articular surfaces are in most intimate contact. Flexion and extension of the elbow-joint are limited by the tension of the structures on the front and back of the joint; the limitation of flexion is also aided by the soft structures of the arm and forearm coming into contact." [Wikipedia:Humeroradial_joint]
synonym: "articulatio humeroradialis" EXACT LATIN [Wikipedia:Humeroradial_joint]
xref: FMA:38855
xref: http://upload.wikimedia.org/wikipedia/commons/9/97/Gray329.png
xref: SCTID:182171008
is_a: UBERON:0003839 ! forelimb joint
relationship: connects UBERON:0000976
relationship: connects UBERON:0001423
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0000976 ! humerus
intersection_of: connects UBERON:0001423 ! radius bone
relationship: connects UBERON:0000976 ! humerus
relationship: connects UBERON:0001423 ! radius bone
relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint
[Term]
id: UBERON:0011112
name: tibiofibular joint
def: "A joint that connects the tibia and the fibula." [UBERON:cjm, Wikipedia:Tibiofibular_joint]
synonym: "fibulatibial joint" EXACT []
synonym: "fibulotibial joint" EXACT []
synonym: "tibiafibular joint" EXACT []
xref: FMA:35181
xref: SCTID:244554002
is_a: UBERON:0002210 {source="FMA"} ! syndesmosis
is_a: UBERON:0004174 ! leg joint
relationship: connects UBERON:0000979
relationship: connects UBERON:0001446
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0000979 ! tibia
intersection_of: connects UBERON:0001446 ! fibula
relationship: connects UBERON:0000979 ! tibia
relationship: connects UBERON:0001446 ! fibula
relationship: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0011113
name: inferior tibiofibular joint
def: "The inferior tibiofibular articulation (tibiofibular syndesmosis) is formed by the rough, convex surface of the medial side of the lower end of the fibula, and a rough concave surface on the lateral side of the tibia. Below, to the extent of about 4 mm. these surfaces are smooth, and covered with cartilage, which is continuous with that of the ankle-joint. The ligaments are: Anterior ligament of the lateral malleolus Posterior ligament of the lateral malleolus Inferior transverse ligament of the tibiofibular syndesmosis Interosseous ligament" [Wikipedia:Inferior_tibiofibular_articulation]
synonym: "distal tibiofibular joint" EXACT [FMA:10465]
synonym: "inferior tibiofibular articulation" RELATED [Wikipedia:Inferior_tibiofibular_articulation]
synonym: "syndesmosis tibiofibularis" EXACT [FMA:TA]
synonym: "tibiofibular syndesmosis" EXACT [FMA:10465]
xref: FMA:10465
xref: SCTID:182209000
is_a: UBERON:0011112 {source="FMA"} ! tibiofibular joint
relationship: connects UBERON:0000979 {notes="lateral side"} ! tibia
relationship: connects UBERON:0004410 ! distal epiphysis of fibula
[Term]
id: UBERON:0011117
name: superior tibiofibular joint
def: "The superior tibiofibular articulation is an arthrodial joint between the lateral condyle of the tibia and the head of the fibula. The contiguous surfaces of the bones present flat, oval facets covered with cartilage and connected together by an articular capsule and by anterior and posterior ligaments. When the term \"tibiofibular articulation\" is used without a modifier, it refers to the superior, and not the inferior tibiofibular articulation." [Wikipedia:Superior_tibiofibular_joint]
synonym: "articulatio tibiofibularis" RELATED LATIN [Wikipedia:Superior_tibiofibular_joint]
synonym: "proximal tibiofibular joint" EXACT [FMA:35184]
synonym: "proximal tibiofibular joint" RELATED [Wikipedia:Superior_tibiofibular_joint]
synonym: "superior tibiofibular articulation" RELATED [Wikipedia:Superior_tibiofibular_joint]
synonym: "tibiofibular joint" BROAD [Wikipedia:Superior_tibiofibular_joint]
xref: FMA:35184
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a8/Gray347.png/250px-Gray347.png
xref: SCTID:182208008
is_a: UBERON:0011112 ! tibiofibular joint
relationship: connects UBERON:0008775
relationship: connects UBERON:0009985
intersection_of: UBERON:0011112 ! tibiofibular joint
intersection_of: connects UBERON:0008775 ! proximal epiphysis of fibula
intersection_of: connects UBERON:0009985 ! lateral condyle of femur
relationship: connects UBERON:0008775 ! proximal epiphysis of fibula
relationship: connects UBERON:0009985 ! lateral condyle of femur
[Term]
id: UBERON:0011118
name: tarsometatarsal joint
def: "The tarsometatarsal articulations are arthrodial joints in the foot. It is also known as the \"Lisfranc joint\". It is named after 18th-19th century surgeon and gynecologist, Jacques Lisfranc de St. Martin." [Wikipedia:Tarsometatarsal_articulations]
synonym: "articulationes tarsometatarsales" RELATED LATIN [Wikipedia:Tarsometatarsal_articulations]
synonym: "cuboideometatarsal" RELATED [Wikipedia:Tarsometatarsal_articulations]
synonym: "lisfranc joint" RELATED [Wikipedia:Tarsometatarsal_articulations]
synonym: "tarso-metatarsal join" EXACT []
synonym: "tarsometatarsal" RELATED [Wikipedia:Tarsometatarsal_articulations]
synonym: "tarsometatarsal articulation" RELATED [Wikipedia:Tarsometatarsal_articulations]
xref: FMA:35216
xref: http://upload.wikimedia.org/wikipedia/commons/8/8e/Gray355.png
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray358.png
xref: SCTID:182222008
is_a: UBERON:0001487 ! joint of foot
relationship: connects UBERON:0001447
relationship: connects UBERON:0001448
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001447 ! tarsal bone
intersection_of: connects UBERON:0001448 ! metatarsal bone
relationship: connects UBERON:0001447 ! tarsal bone
relationship: connects UBERON:0001448 ! metatarsal bone
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0011119
name: carpometacarpal joint
def: "The carpometacarpal joints (CMC) are joints in the wrist that articulates the distal row of carpal bones and the proximal bases of the metacarpal bones." [Wikipedia:Carpometacarpal_joint]
synonym: "articulationes carpometacarpeæ" EXACT LATIN [Wikipedia:Carpometacarpal_joint]
synonym: "carpometacarpal" BROAD [Wikipedia:Carpometacarpal_joint]
synonym: "carpometacarpal articulation" RELATED [Wikipedia:Carpometacarpal_joint]
synonym: "CMJ" BROAD [Wikipedia:Carpometacarpal_joint]
xref: FMA:35287
xref: http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray335.png
xref: ncithesaurus:Carpometacarpal_Joint
xref: SCTID:361842002
is_a: UBERON:0001489 ! joint of hand
relationship: connects UBERON:0001435
relationship: connects UBERON:0002374
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001435 ! carpal bone
intersection_of: connects UBERON:0002374 ! metacarpal bone
relationship: connects UBERON:0001435 ! carpal bone
relationship: connects UBERON:0002374 ! metacarpal bone
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0011120
name: laryngeal joint
synonym: "joint of larynx" EXACT [FMA:55100]
synonym: "laryngeal articulation" EXACT [FMA:55100]
xref: FMA:55100
is_a: UBERON:0002217 {source="FMA"} ! synovial joint
relationship: connects UBERON:0001739
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001739 ! laryngeal cartilage
relationship: connects UBERON:0001739 ! laryngeal cartilage
relationship: part_of UBERON:0010323 ! cranial skeletal system
[Term]
id: UBERON:0011121
name: cricothyroid joint
def: "The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the thyroid cartilage." [Wikipedia:Cricothyroid_articulation]
synonym: "crico-thyroid joint" RELATED [Wikipedia:Cricothyroid_articulation]
synonym: "cricothyroid articulation" EXACT [FMA:55101]
xref: FMA:55101
xref: http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg
xref: ncithesaurus:Cricothyroid_Joint
xref: SCTID:361944002
is_a: UBERON:0011120 {source="FMA"} ! laryngeal joint
relationship: connects UBERON:0001738
relationship: connects UBERON:0002375
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001738 ! thyroid cartilage
intersection_of: connects UBERON:0002375 ! cricoid cartilage
relationship: connects UBERON:0001738 ! thyroid cartilage
relationship: connects UBERON:0002375 ! cricoid cartilage
relationship: part_of UBERON:0010323 {source="cjm"} ! cranial skeletal system
[Term]
id: UBERON:0011122
name: cricoarytenoid joint
def: "The cricoarytenoid articulation (or joint) is a joint connecting the cricoid cartilage and the arytenoid cartilage." [Wikipedia:Cricoarytenoid_articulation]
synonym: "crico-arytenoid joint" EXACT [FMA:55102]
synonym: "crico-arytenoid joint" RELATED [Wikipedia:Cricoarytenoid_articulation]
synonym: "cricoarytenoid articulation" EXACT [FMA:55102]
xref: FMA:55102
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray960.png
xref: ncithesaurus:Cricoarytenoid_Joint
xref: SCTID:361945001
is_a: UBERON:0011120 {source="FMA"} ! laryngeal joint
relationship: connects UBERON:0001740
relationship: connects UBERON:0002375
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001740 ! arytenoid cartilage
intersection_of: connects UBERON:0002375 ! cricoid cartilage
relationship: connects UBERON:0001740 ! arytenoid cartilage
relationship: connects UBERON:0002375 ! cricoid cartilage
relationship: part_of UBERON:0010323 {source="cjm"} ! cranial skeletal system
[Term]
id: UBERON:0011123
name: stifle joint
def: "a complex joint in the hind limbs of quadruped mammals such as the sheep, horse or dog. It is the equivalent joint to the human knee. It is often the largest synovial joint in the body." [Wikipedia:Stifle_joint]
xref: MESH:A.13.473.683
xref: ncithesaurus:Stifle_Joint
xref: SCTID:116010006
is_a: UBERON:0001485 ! knee joint
relationship: connects UBERON:0000979 ! tibia
relationship: connects UBERON:0000981 ! femur
relationship: connects UBERON:0002446 ! patella
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0011124
name: xiphisternal joint
def: "The xiphisternal joint (or xiphisternal synchondrosis) is a location near the bottom of the sternum, where the body of the sternum and the xiphoid process." [Wikipedia:Xiphisternal_joint]
synonym: "synchondrosis xiphisternalis" EXACT [FMA:7503]
synonym: "xiphisternal junction" RELATED [Wikipedia:Xiphisternal_joint]
synonym: "xiphisternal synchdrondosis" RELATED [Wikipedia:Xiphisternal_joint]
xref: FMA:7503
xref: http://upload.wikimedia.org/wikipedia/commons/2/23/Gray116.png
xref: SCTID:118923007
xref: SCTID:118924001
is_a: UBERON:0002216 {source="FMA"} ! symphysis
relationship: connects UBERON:0002207
relationship: connects UBERON:0006820
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0002207 ! xiphoid process
intersection_of: connects UBERON:0006820 ! body of sternum
relationship: connects UBERON:0002207 ! xiphoid process
relationship: connects UBERON:0006820 ! body of sternum
[Term]
id: UBERON:0011130
name: temporomandibular joint primordium
synonym: "temporo-mandibular joint primordium" EXACT [EMAPA:18714]
xref: EMAPA:18714
is_a: UBERON:0001048 ! primordium
relationship: part_of UBERON:0001694 {source="EMAPA"} ! petrous part of temporal bone
[Term]
id: UBERON:0011131
name: intermetacarpal joint
def: "Synovial joint between the bases of adjacent metacarpals. Examples: intermetacarpal joint of right second and third metacarpal bones, intermetacarpal joint of right fourth and fifth metacarpal bones." [FMA:35288, Wikipedia:Intermetacarpal_articulations]
synonym: "intermetacarpal" RELATED [Wikipedia:Intermetacarpal_articulations]
synonym: "intermetacarpal articulation" RELATED [Wikipedia:Intermetacarpal_articulations]
xref: FMA:35288
xref: SCTID:303065007
is_a: UBERON:0001489 ! joint of hand
relationship: connects UBERON:0002374 {notes="two adjacent metacarpals"} ! metacarpal bone
relationship: connects UBERON:0002374 {cardinality="2"} ! metacarpal bone
relationship: part_of UBERON:0004453 ! metacarpus region
[Term]
id: UBERON:0011132
name: intercarpal joint
def: "The intercarpal articulations (articulations of the carpus) can be subdivided into three sets of articulations: Those of the proximal row of carpal bones, those of the distal row of carpal bones, and those of the two rows with each other." [Wikipedia:Intercarpal_articulations]
synonym: "carpal joint" EXACT [FMA:35292]
synonym: "intercarpal" RELATED [Wikipedia:Intercarpal_articulations]
synonym: "intercarpal articulation" RELATED [Wikipedia:Intercarpal_articulations]
synonym: "midcarpal articulation" RELATED [Wikipedia:Intercarpal_articulations]
xref: FMA:35292
xref: http://upload.wikimedia.org/wikipedia/commons/3/37/Gray336.png
xref: ncithesaurus:Carpal_Joint
xref: SCTID:182176003
is_a: UBERON:0001489 ! joint of hand
relationship: connects UBERON:0001435 {cardinality="2"} ! carpal bone
relationship: connects UBERON:0001435 {notes="two adjacent carpals"} ! carpal bone
relationship: part_of UBERON:0004452 {source="FMA"} ! carpal region
[Term]
id: UBERON:0011133
name: intermetatarsal joint
def: "A joint that connects two adjacent metatarsals" [Wikipedia:Intermetatarsal_articulations]
comment: In humans: The base of the first metatarsal is not connected with that of the second by any ligaments; in this respect the great toe resembles the thumb[WP]
xref: FMA:35219
xref: http://upload.wikimedia.org/wikipedia/commons/d/dc/Gray358.png
xref: SCTID:361868009
is_a: UBERON:0001487 ! joint of foot
relationship: connects UBERON:0001448 {cardinality="2"} ! metatarsal bone
relationship: connects UBERON:0001448 {notes="two adjacent metatarsals"} ! metatarsal bone
relationship: part_of UBERON:0000983 ! metatarsus region
[Term]
id: UBERON:0011134
name: nonsynovial joint
def: "Joint in which the articulating bones or cartilages are connected by ligaments or fibrocartilage without an intervening synovial cavity. Examples: sagittal suture, inferior tibiofibular syndesmosis, costochondral joint, pubic symphysis." [FMA:7491]
synonym: "solid joint" EXACT [FMA:7491]
xref: FMA:7491
is_a: UBERON:0000982 {source="FMA"} ! skeletal joint
[Term]
id: UBERON:0011135
name: intervertebral cartilage
def: "A cartilage element that lies between two successive vertebral centra." [ISBN10:0073040584]
xref: AAO:0000795
property_value: UBPROP:0000001 "Block of cartilage, which usually ossifies, that lies between successive vertebral centra.[AAO]" xsd:string
is_a: UBERON:0007844 ! cartilaginous element
relationship: adjacent_to UBERON:0001075 {notes="between two centra"} ! body of vertebra
relationship: adjacent_to UBERON:0001075 {cardinality="2"} ! body of vertebra
relationship: part_of UBERON:0001468 {source="FMA", source="MA"} ! intervertebral joint
[Term]
id: UBERON:0011136
name: ligament of vertebral column
def: "ligament that joins successive centra. Important in controlling the stiffness of the vertebral column when it flexes." [ISBN10:0073040584]
synonym: "intervertebral ligament" BROAD []
synonym: "vertebral column ligament" EXACT [FMA:31892]
xref: FMA:31892
xref: SCTID:244590009
is_a: UBERON:0008846 ! skeletal ligament
relationship: part_of UBERON:0001075
intersection_of: UBERON:0008846 ! skeletal ligament
intersection_of: part_of UBERON:0001075 ! body of vertebra
relationship: part_of UBERON:0001075 ! body of vertebra
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0011137
name: axial skeletal system
def: "Subdivision of the skeletal system which consists of the axial skeleton plus associated joints." [UBERON:cjm]
xref: FMA:7483
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
[Term]
id: UBERON:0011138
name: post-cranial axial skeletal system
def: "Subdivision of the skeletal system which consists of the post-cranial axial skeleton plus associated joints." [UBERON:cjm]
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
[Term]
id: UBERON:0011139
name: synovial limb joint
def: "Any synovial joint that is part of a (free) limb." [UBERON:cjm]
comment: Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses.
synonym: "synovial joint of free limb segment" EXACT [FMA:258776]
xref: FMA:258776
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003657 ! limb joint
relationship: part_of UBERON:0002101
intersection_of: UBERON:0002217 ! synovial joint
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0011140
name: superficial part of masseter muscle
synonym: "masseter, superficial" EXACT [FEED:FEED]
synonym: "pars superficialis (musculus masseter)" EXACT [FMA:49000]
synonym: "pars superficialis of masseter muscle" EXACT []
synonym: "superficial layer of masseter" EXACT [FMA:49000]
synonym: "superficial part of masseter" EXACT [FMA:49000]
xref: FMA:49000
xref: SCTID:142208007
property_value: UBPROP:0000001 "The superficial masseter is a separable part of the masseter muscle, is superficial to all other masseter muscle parts, and attaches to the mandibular angle.[FEED]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: in_superficial_part_of UBERON:0001597 ! masseter muscle
[Term]
id: UBERON:0011141
name: appendicular ossicle
def: "Ossicle that is part of the appendicular skeleton." [VSAO:0000131]
comment: Examples of appendicular ossicles include the patella and meniscus of the knee joint.
synonym: "ossicle of appendicular skeleton" EXACT [Obol:automatic]
xref: VSAO:0000131
xref: XAO:0004194
is_a: UBERON:0010911 ! ossicle
relationship: part_of UBERON:0002091
intersection_of: UBERON:0010911 ! ossicle
intersection_of: part_of UBERON:0002091 ! entire appendicular skeleton
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
[Term]
id: UBERON:0011142
name: axial ossicle
def: "Ossicle that is part of the axial skeleton." [VSAO:0000133]
comment: Examples of axial ossicles include the ossified tendons adjacent to the neural spines of the vertebral column.
synonym: "ossicle of axial skeleton" EXACT [Obol:automatic]
xref: VSAO:0000133
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010911 ! ossicle
relationship: part_of UBERON:0005944
intersection_of: UBERON:0010911 ! ossicle
intersection_of: part_of UBERON:0005944 ! axial skeleton
relationship: part_of UBERON:0005944 ! axial skeleton
[Term]
id: UBERON:0011143
name: upper urinary tract
def: "Subdivision of urinary system which consists of the kidney and the ureters." [FMA:45658]
xref: FMA:45658
xref: galen:UpperUrinaryTract
xref: SCTID:181413006
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001008 {source="FMA"} ! excretory system
[Term]
id: UBERON:0011144
name: adductor muscle of hip
def: "." [Wikipedia:Adductor_muscles_of_the_hip]
synonym: "adductor group (leg)" EXACT [MA:0002267]
synonym: "muscle of adductor group" RELATED []
xref: BTO:0000030
xref: http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG
xref: MA:0002267
xref: SCTID:181670005
xref: SCTID:368101007
is_a: UBERON:0010890 ! pelvic complex muscle
is_a: UBERON:0011145 ! adductor muscle
relationship: has_muscle_nerve UBERON:0005465 {notes="a small part of adductor magnus is innervated by the tibial nerve", source="dbpedia"} ! obturator nerve
relationship: has_muscle_origin UBERON:0001272 ! pelvic bone
relationship: part_of UBERON:0010709 ! pelvic complex
[Term]
id: UBERON:0011145
name: adductor muscle
def: "A muscle capable of adduction. Adduction is a movement which brings a part of the anatomy closer to the middle sagittal plane of the body. It is opposed to abduction." [Wikipedia:Adduction, Wikipedia:Adductor_muscle]
comment: we place the TAO class here even though it is a cranial muscle; it is defined functionally
subset: functional_classification
synonym: "adductor" RELATED []
xref: FMA:74998
xref: TAO:0002136
xref: ZFA:0005268
property_value: UBPROP:0000001 "A muscle that brings a body part closer to the sagittal plane of the body.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass cranial muscle (TAO:0001953)[TAO]" xsd:string
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0011146
name: silk gland
def: "Any of the glands in silk-spinning insects and spiders that secrete a protein liquid that hardens into silk on exposure to air." [BTO:0001250]
xref: BTO:0001250
is_a: UBERON:0002365 {source="BTO"} ! exocrine gland
[Term]
id: UBERON:0011147
name: Verson's gland
def: "A gland found in the larvae of lepidoptera. Each gland is made of three cells: the secretory cell, the reservoir cell and the canal cell." []
is_a: UBERON:0002365 ! exocrine gland
relationship: part_of UBERON:0007376 ! outer epithelial layer
[Term]
id: UBERON:0011148
name: submucosal gland
def: "Gland of the lamina epithelialis mucosae which perforate the lamina muscularis, with their adenomeres located in the submucosal connective tissue." [BTO:0003751, Wikipedia:Submucosal_glands]
xref: BTO:0003751
is_a: UBERON:0000414 ! mucous gland
relationship: adjacent_to UBERON:0003350
relationship: part_of UBERON:0000009
intersection_of: UBERON:0000414 ! mucous gland
intersection_of: adjacent_to UBERON:0003350 ! epithelium of mucosa
intersection_of: part_of UBERON:0000009 ! submucosa
relationship: adjacent_to UBERON:0003350 ! epithelium of mucosa
relationship: part_of UBERON:0000009 ! submucosa
[Term]
id: UBERON:0011149
name: Marshall's gland
def: "A paired organ in the genito-urinary apparatus of Raja (and probably other skates and rays) whose cavity is fluid filled." [http://www.briancoad.com/Dictionary/Complete%20Dictionary.htm]
synonym: "alkaline gland" RELATED [BTO:0001661]
xref: BTO:0001661
is_a: UBERON:0002365 ! exocrine gland
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001008 {source="BTO"} ! excretory system
[Term]
id: UBERON:0011150
name: pharyngeal arch derived gill
subset: uberon_slim
synonym: "branchia" RELATED [BTO:0000518]
xref: AAO:0010171
xref: BTO:0000518
xref: EFO:0000933
xref: GAID:1218
xref: MAT:0000134
xref: MIAA:0000134
xref: ncithesaurus:Gill
xref: OpenCyc:Mx4rvVi9dZwpEbGdrcN5Y29ycA
xref: TAO:0000354
xref: VHOG:0001214
xref: XAO:0000120
xref: ZFA:0000354
property_value: UBPROP:0000001 "Anatomical structure consisting of a series of membranes which allow dissolved oxygen from the water to pass into the bloodstream and carbon dioxide to pass out of the bloodstream.[AAO]" xsd:string
is_a: UBERON:0002535 ! gill
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0008894 {source="XAO"} ! gill precursor
[Term]
id: UBERON:0011151
name: jaw depressor muscle
def: "A muscle whose action is to depress the lower jaw." [doi:10.1006/bijl.2000.0436]
comment: Taxon notes: In amphibians, "Muscle that pulls the hyoid apparatus forward and depresses the lower jaw." [AAO:0010655]. "The protractor hyoideus muscle in teleosts is commonly, albeit mistakenly, referred to as the geniohyoideus muscle, which is involved in the coracomandibularis coupling. According to Edgeworth (1935) and Winterbottom (1974), the protractor hyoideus is composed of a fusion of the intermandibularis posterior and the interhyoideus muscles which resulted in the protractor hyoideus which spans the hyoid and mandible. The intermandibularis spans the mandible while the closely apposed interhyoideus spans the hyoid in other fishes. Furthermore, they concluded that any muscle that is homologous to the geniohyoideus (coracomandibularis coupling) in other lower vertebrates has been lost in teleosts, as well as gars. However, the protractor hyoideus muscle is functionally analogous to the coracomandibularis coupling of other vertebrates and so we use it in our discussion to show the phylogenetically broad roles of these couplings in jaw mechanics."[doi:10.1006/bijl.2000.0436]
synonym: "branchiomandibularis" NARROW SENSU [doi:10.1006/bijl.2000.0436]
synonym: "coracomandibularis" NARROW SENSU [doi:10.1006/bijl.2000.0436]
synonym: "depressor gnathalis" NARROW SENSU [doi:10.1006/bijl.2000.0436]
synonym: "geniohyoideus" NARROW SENSU [doi:10.1006/bijl.2000.0436, TAO:0000612]
synonym: "geniohyoideus muscle" NARROW SENSU [doi:10.1006/bijl.2000.0436]
synonym: "geniothoracis" NARROW SENSU [doi:10.1006/bijl.2000.0436]
synonym: "protractor hyoidei" NARROW PLURAL [TAO:0000612]
synonym: "protractor hyoideus" NARROW SENSU [doi:10.1006/bijl.2000.0436]
xref: AAO:0010655
xref: TAO:0000612
xref: XAO:0004127
property_value: UBPROP:0000001 "Muscle located on ventral side of the head, linking the ventral hyoid arch to the dentary. Innervated by ramus mandibularis V and ramus hyoides VII.[TAO]" xsd:string
property_value: UBPROP:0000001 "Muscle that pulls the hyoid apparatus forward and depresses the lower jaw.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: subclass hyobranchial muscles (AAO:0000224)[AAO]" xsd:string
is_a: UBERON:0005493 ! hyoid muscle
[Term]
id: UBERON:0011152
name: dorsal hyoid arch skeleton
synonym: "dorsal hyoid arch" EXACT [ZFA:0001401]
synonym: "dorsal pharyngeal arch 2 skeleton" EXACT []
synonym: "dorsal visceral arch 2" EXACT [ZFA:0001401]
xref: AAO:0010371
xref: TAO:0001401
xref: XAO:0003178
xref: ZFA:0001401
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton
[Term]
id: UBERON:0011153
name: ventral hyoid arch skeleton
synonym: "ventral hyoid arch" EXACT [ZFA:0001402]
synonym: "ventral pharyngeal arch 2 skeleton" EXACT []
synonym: "ventral visceral arch 2" EXACT [ZFA:0001402]
xref: AAO:0010372
xref: TAO:0001402
xref: XAO:0003179
xref: ZFA:0001402
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton
[Term]
id: UBERON:0011154
name: gular region
def: "Surface structure that extends from the chin covering pharynx and larynx." []
xref: TAO:0002286
property_value: UBPROP:0000001 "Surface structure that is the region between the chin and the isthmus. (from http://www.briancoad.com/Dictionary/introduction.htm).[TAO]" xsd:string
is_a: UBERON:0003102 {source="TAO"} ! surface structure
relationship: part_of UBERON:0007811 ! craniocervical region
[Term]
id: UBERON:0011155
name: sylvian cistern
def: "The subarachnoid space associated with the lateral cerebral sulcus (Sylvian fissure); contains the M1 segment of the middle cerebral artery and the origin of lenticulostriate arteries, and proximal parts of the middle cerebral artery" [http://www.mondofacto.com/facts/dictionary?Sylvian+cistern]
xref: ncithesaurus:Sylvian_Cistern
is_a: UBERON:0004050 ! subarachnoid cistern
relationship: adjacent_to UBERON:0002721 ! lateral sulcus
[Term]
id: UBERON:0011156
name: facial skeleton
def: "Subdivision of skull that consists of the facial bones." [http://www.bartleby.com/107/37.html, MP:0005274, UBERON:cjm, Wikipedia:Facial_skeleton]
synonym: "facial bone" RELATED [MA:0000318]
synonym: "facial skeleton" EXACT [FMA:53673]
synonym: "ossa facialia" RELATED LATIN [Wikipedia:Facial_skeleton]
synonym: "ossa faciei" RELATED LATIN [Wikipedia:Facial_skeleton]
synonym: "viscerocranium" RELATED INCONSISTENT [MA:0000318]
xref: EHDAA2:0002206
xref: EHDAA:8361
xref: EMAPA:18022
xref: FMA:53673
xref: http://upload.wikimedia.org/wikipedia/commons/7/77/Illu_facial_bones.jpg
xref: MA:0000318
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0011158 {source="FMA"} ! primary subdivision of skull
relationship: develops_from UBERON:0002342 {source="PMID:11523816"} ! neural crest
relationship: part_of UBERON:0001456 {source="FMA"} ! face
[Term]
id: UBERON:0011157
name: cuneiform cartilage
def: "The cuneiform cartilages of the larynx are two small, elongated pieces of yellow elastic cartilage, placed one on either side, in the aryepiglottic fold, where they give rise to small whitish elevations on the surface of the mucous membrane, just in front of the arytenoid cartilages." [Wikipedia:Cuneiform_cartilages]
comment: AAO def: "Independent cartilage that may occur dorsal or anterior to the prominentiae apicales dorsales of the arytenoid cartilages."
synonym: "cartilage of Morgagni" EXACT [FMA:55111]
synonym: "cartilage of Wrisberg" EXACT [FMA:55111]
synonym: "cartilagines cuneiformes" RELATED LATIN [Wikipedia:Cuneiform_cartilages]
synonym: "cartilago apicalis intermedia" RELATED [AAO:0000690]
synonym: "cartilago apicalis seu cartilago Santoriniana" RELATED [AAO:0000690]
synonym: "Wrisbergi cartilage" EXACT [AAO:0000690]
xref: AAO:0000690
xref: FMA:55111
xref: http://upload.wikimedia.org/wikipedia/commons/5/50/Gray956.png
xref: SCTID:264456009
property_value: UBPROP:0000001 "Independent cartilage that may occur dorsal or anterior to the prominentiae apicales dorsales of the arytenoid cartilages.[AAO]" xsd:string
is_a: UBERON:0001739 {source="FMA"} ! laryngeal cartilage
is_a: UBERON:0001996 {source="Wikipedia"} ! elastic cartilage tissue
is_a: UBERON:0003406 ! cartilage of respiratory system
is_a: UBERON:0003583 ! larynx connective tissue
[Term]
id: UBERON:0011158
name: primary subdivision of skull
def: "The skull can be divided into two: the neurocranium and the facial skeleton" []
synonym: "skull subdivision" EXACT [FMA:54964]
synonym: "subdivision of skull" EXACT [FMA:54964]
xref: FMA:54964
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
relationship: part_of UBERON:0003129 ! skull
[Term]
id: UBERON:0011159
name: primary subdivision of cranial skeletal system
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
relationship: part_of UBERON:0010323 ! cranial skeletal system
[Term]
id: UBERON:0011160
name: nasal suture
def: "a suture joining a nasal bone to another bone." []
xref: SCTID:368992007
is_a: UBERON:0009199 ! facial suture
relationship: connects UBERON:0001681
intersection_of: UBERON:0009199 ! facial suture
intersection_of: connects UBERON:0001681 ! nasal bone
relationship: connects UBERON:0001681 ! nasal bone
[Term]
id: UBERON:0011161
name: spheno-occipital synchondrosis
def: "the cartilaginous junction between the basisphenoid and basioccipital bones of the mammalian skull that in humans is usually closed by the age of 25" [http://www.merriam-webster.com/medical/spheno-occipital%20synchondrosis]
xref: FMA:54818
xref: SCTID:140895003
is_a: UBERON:0001725 ! cranial synchondrosis
relationship: connects UBERON:0001692
relationship: connects UBERON:0006428
intersection_of: UBERON:0001725 ! cranial synchondrosis
intersection_of: connects UBERON:0001692 ! basioccipital bone
intersection_of: connects UBERON:0006428 ! basisphenoid bone
relationship: connects UBERON:0001692 ! basioccipital bone
relationship: connects UBERON:0006428 ! basisphenoid bone
[Term]
id: UBERON:0011162
name: supraoccipital cartilaginous condensation
synonym: "non-squamous part of supraoccipital bone" RELATED [EMAPA:18341]
synonym: "supra-occipital cartilage condensation" EXACT []
synonym: "supraoccipital cartilage condensation" EXACT [EMAPA:18341]
xref: EMAPA:18341
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005863 ! cartilaginous condensation
relationship: develops_into UBERON:0004747
intersection_of: UBERON:0005863 ! cartilaginous condensation
intersection_of: develops_into UBERON:0004747 ! supraoccipital bone
relationship: develops_from UBERON:0011163 ! supraoccipital pre-cartilage condensation
relationship: develops_into UBERON:0004747 ! supraoccipital bone
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0011163
name: supraoccipital pre-cartilage condensation
synonym: "supra-occipital pre-cartilage condensation" EXACT [EHDAA2:0001963]
xref: EHDAA2:0001963
xref: EHDAA:9534
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005866 ! pre-cartilage condensation
relationship: develops_into UBERON:0004747
intersection_of: UBERON:0005866 ! pre-cartilage condensation
intersection_of: develops_into UBERON:0004747 ! supraoccipital bone
relationship: develops_from UBERON:0009617 {source="EHDAA2-inferred"} ! head paraxial mesoderm
relationship: develops_into UBERON:0004747 ! supraoccipital bone
relationship: part_of UBERON:0002241 {source="EHDAA2"} ! chondrocranium
[Term]
id: UBERON:0011164
name: neurocranium bone
def: "A bone that is part of a neurocranium [Obol]." [OBOL:automatic]
xref: MA:0001478
xref: SCTID:120229002
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004766 ! cranial bone
relationship: part_of UBERON:0001703
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0011165
name: crico-esophageal tendon
def: "Longitudinal fibers of the esophagus that attaches to the posterior aspect of the cricoid cartilage of the larynx" [http://www.medilexicon.com/medicaldictionary.php?t=90131]
synonym: "crico-oesophageal tendon" EXACT []
synonym: "cricoesophageal tendon" EXACT []
synonym: "Gillette suspensory ligament" RELATED [http://www.medilexicon.com/]
synonym: "suspensory ligament of esophagus" RELATED [http://www.medilexicon.com/]
synonym: "tendo cricoesophageus" EXACT [http://www.medilexicon.com/]
xref: FMA:76887
xref: ncithesaurus:Cricoesophageal_Tendon
xref: SCTID:322841005
is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament
relationship: attaches_to UBERON:0002375 ! cricoid cartilage
[Term]
id: UBERON:0011166
name: patellofemoral joint
synonym: "femorapatellar joint" EXACT []
synonym: "femoropatellar joint" EXACT []
xref: FMA:43574
xref: galen:PatelloFemoralJoint
xref: SCTID:182202009
is_a: UBERON:0004174 ! leg joint
is_a: UBERON:0011139 {source="FMA"} ! synovial limb joint
relationship: connects UBERON:0000981 ! femur
relationship: connects UBERON:0002446 ! patella
relationship: part_of UBERON:0001485 ! knee joint
[Term]
id: UBERON:0011167
name: septomaxilla bone
def: "Paired, intramembranous bones located within the nasal capsules and embedded in the nasal cartilages; it is pierced by the ductus nasolacrimalis." [AAO:0000556]
comment: A small dermal bone of the facial series that is often absent; when present it is usually sunken beneath the surface bones and aids in forming the nasal cavity
synonym: "internasale" RELATED [AAO:0000556]
synonym: "intranasal" RELATED [AAO:0000556]
synonym: "lacrimale" RELATED [AAO:0000556]
synonym: "le cornet" RELATED [AAO:0000556]
synonym: "nariale" RELATED [AAO:0000556]
synonym: "nasale" RELATED [AAO:0000556]
synonym: "os internasale" RELATED [AAO:0000556]
synonym: "os nariale" RELATED [AAO:0000556]
synonym: "septomaxilla" EXACT [AAO:0000556]
synonym: "septomaxillary" RELATED [AAO:0000556]
synonym: "turbinale" RELATED [AAO:0000556]
xref: AAO:0000556
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0003462 ! facial bone
relationship: part_of UBERON:0006813 {source="AAO"} ! nasal skeleton
[Term]
id: UBERON:0011168
name: postfrontal bone
def: "a bone behind and above the orbit of which it commonly forms part of the border that is present in many vertebrates and corresponds to the postorbital process of the frontal bone of various birds and mammals " [http://www.merriam-webster.com/dictionary/postfrontal]
synonym: "postfrontal" BROAD []
property_value: "present_in_taxon" NCBITaxon:8570
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0008907 {source="Kardong"} ! dermal bone
relationship: overlaps UBERON:0001697 {source="Kardong"} ! orbital region
relationship: part_of UBERON:0003113 {source="Kardong", notes="orbital series"} ! dermatocranium
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0011169
name: postorbital bone
def: "The postorbital is one of the bones in vertebrate skulls which forms a portion of the dermal skull roof and, sometimes, a ring about the orbit. Generally, it is located behind the postfrontal and posteriorly to the orbital fenestra. In some vertebrates, the postorbital is fused with the postfrontal to create a postorbitofrontal." [Wikipedia:Postorbital_bone]
synonym: "postorbital" BROAD []
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0008907 {source="Kardong"} ! dermal bone
relationship: overlaps UBERON:0001697 {source="Kardong"} ! orbital region
relationship: part_of UBERON:0003113 {source="Kardong", notes="orbital series"} ! dermatocranium
relationship: part_of UBERON:0011156 ! facial skeleton
[Term]
id: UBERON:0011170
name: quadrate-articular joint
def: "A skeletal joint that connects quadrate and articular bones." [http://evolution.berkeley.edu/evolibrary/article/evograms_05, UBERON:cjm]
comment: Usage notes: see comments for UBERON:0004744 articular/anguloarticular. Taxon notes: over time, the synapsids' quadrate-articular jaw joint (which the rest of the tetrapods possess) was replaced by a dentary-squamosal joint (which all living mammals possess), while the quadrate and articular migrated, shrank, and became part of the complex of middle ear bones.[http://evolution.berkeley.edu/evolibrary/article/evograms_05]
synonym: "quadrate-anguloarticular joint" RELATED [ZFA:0005484]
xref: TAO:0001802
xref: ZFA:0005484
property_value: RO:0002161 NCBITaxon:32525
property_value: UBPROP:0000001 "Joint that articulates quadrate and anguloarticular bones. Quadrate-articular joint is paired.[TAO]" xsd:string
is_a: UBERON:0011171 ! jaw joint
relationship: connects UBERON:0004744
relationship: connects UBERON:0006597
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0004744 ! articular/anguloarticular
intersection_of: connects UBERON:0006597 ! quadrate bone
relationship: connects UBERON:0004744 ! articular/anguloarticular
relationship: connects UBERON:0006597 ! quadrate bone
[Term]
id: UBERON:0011171
name: jaw joint
def: "Skeletal joint that articulates bones of upper and lower jaw." [http://evolution.berkeley.edu/evolibrary/article/evograms_05, UBERON:cjm]
comment: Some synapsids retained two pairs of jaw joints - quadrate-articular and tempero-mandibular, but this unusual paired condition did not last long[http://evolution.berkeley.edu]
is_a: UBERON:0002217 {source="abduced"} ! synovial joint
relationship: connects UBERON:0003277
relationship: connects UBERON:0003278
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0003277 ! skeleton of upper jaw
intersection_of: connects UBERON:0003278 ! skeleton of lower jaw
relationship: connects UBERON:0003277 ! skeleton of upper jaw
relationship: connects UBERON:0003278 ! skeleton of lower jaw
[Term]
id: UBERON:0011172
name: retrorubral area
def: "The term retrorubral area refers to a region of the rat brain caudal to the red nucleus and caudal and dorsal to the ventral tegmental area identified by Nissl stain in the rat ( Swanson-2004 ) and the mouse ( Hof-2000; Paxinos-2001 ). It is one of three parts of the midbrain reticular nucleus; the other two are the magnocellular part of the midbrain reticular nucleus and the parvicellular part of the midbrain reticular nucleus ( Swanson-2004 ). Some authors restrict its definition to the part of the retrorubral area where dopaminergic cells of the A8 cell group are prominent" [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1049]
synonym: "A8" BROAD [NIF_GrossAnatomy:nlx_anat_20090301]
synonym: "midbrain reticular nucleus, retrorubral area" EXACT [ABA:RR]
synonym: "retrorubal field" BROAD [http://braininfo.rprc.washington.edu/]
xref: ABA:RR
xref: NIF_GrossAnatomy:nlx_anat_20090301
is_a: UBERON:0002635 ! regional part of midbrain tegmentum
relationship: part_of UBERON:0007415 {source="Obol"} ! nucleus of midbrain reticular formation
[Term]
id: UBERON:0011173
name: anterior division of bed nuclei of stria terminalis
def: "The term anterior nuclei of stria terminalis refers to one of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the posterior nuclei of stria terminalis. The anterior division includes the anterolateral area of stria terminalis, anteromedial area of stria terminalis, oval nucleus of stria terminalis, juxtacapsular nucleus of stria terminalis, rhomboid nucleus of stria terminalis, dorsomedial nucleus of stria terminalis, fusiform nucleus of stria terminalis, ventral nucleus of stria terminalis, and the magnocellular nucleus of stria terminalis" [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2753]
synonym: "anterior division" BROAD [MA:0000926]
synonym: "anterior nuclei of stria terminalis" EXACT [http://braininfo.rprc.washington.edu]
synonym: "bed nuclei of the stria terminalis, anterior division" EXACT [ABA:BSTa]
xref: ABA:BSTa
xref: MA:0000926
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria terminalis
[Term]
id: UBERON:0011175
name: fusiform nucleus of stria terminalis
def: "." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3218]
synonym: "bed nuclei of the stria terminalis, anterior division, fusiform nucleus" EXACT [ABA:BSTfu]
synonym: "fusiform nucleus" BROAD [MA:0000927]
xref: ABA:BSTfu
xref: MA:0000927
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0011173 {source="MA"} ! anterior division of bed nuclei of stria terminalis
[Term]
id: UBERON:0011176
name: oval nucleus of stria terminalis
def: "." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3214]
synonym: "bed nuclei of the stria terminalis, anterior division, oval nucleus" EXACT [ABA:BSTov]
synonym: "oval nucleus" EXACT [MA:0000929]
xref: ABA:BSTov
xref: MA:0000929
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0011173 {source="MA"} ! anterior division of bed nuclei of stria terminalis
[Term]
id: UBERON:0011177
name: posterior division of bed nuclei of stria terminalis
def: "The term posterior nuclei of stria terminalis refers to one of two divisions of the nuclei of stria terminalis based on topology, connectivity and multiple stains in the rat ( Swanson-2004 ) and the mouse ( Dong-2004 ). The other division consists of the anterior nuclei of stria terminalis. The posterior division includes the principal nucleus of stria terminalis, interfascicular nucleus of stria terminalis, transverse nucleus of stria terminalis, premedullary nucleus of stria terminalis, dorsal nucleus of stria terminalis, the strial extension of stria terminalis, and the cell sparse zone of stria terminalis." [http://braininfo.rprc.washington.edu/CentralDirectory.aspx?ID=2754]
synonym: "bed nuclei of the stria terminalis, posterior division" EXACT [ABA:BSTp]
synonym: "posterior division" BROAD [MA:0000930]
synonym: "posterior nuclei of stria terminalis" EXACT [http://braininfo.rprc.washington.edu]
xref: ABA:BSTp
xref: MA:0000930
is_a: UBERON:0002791 ! regional part of telencephalon
relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria terminalis
[Term]
id: UBERON:0011178
name: principal nucleus of stria terminalis
def: "." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3221]
synonym: "bed nuclei of the stria terminalis, posterior division, principal nucleus" EXACT [ABA:BSTpr]
synonym: "principal nucleus" BROAD [MA:0000931]
xref: ABA:BSTpr
xref: MA:0000931
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0011177 {source="MA"} ! posterior division of bed nuclei of stria terminalis
[Term]
id: UBERON:0011179
name: transverse nucleus of stria terminalis
def: "." [http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3223]
synonym: "bed nuclei of the stria terminalis, posterior division, transverse nucleus" EXACT [ABA:BSTtr]
synonym: "transverse nucleus" BROAD [MA:0000932]
xref: ABA:BSTtr
xref: MA:0000932
is_a: UBERON:0009663 ! telencephalic nucleus
relationship: part_of UBERON:0011177 {source="MA"} ! posterior division of bed nuclei of stria terminalis
[Term]
id: UBERON:0011183
name: corpus spongiosum of penis
def: "Corpus spongiosum (also known as corpus cavernosum urethrae in older texts) is the mass of spongy tissue surrounding the male urethra within the penis." [Wikipedia:Corpus_spongiosum_penis]
comment: Function notes: The function of the corpus spongiosum in erection is to prevent the urethra from pinching closed, thereby maintaining the urethra as a viable channel for ejaculation. To do this, the corpus spongiosum remains pliable during erection while the corpora cavernosum penis becomes engorged with blood.[WP]
synonym: "corpus cavernosum urethra" RELATED DEPRECATED [Wikipedia:Corpus_spongiosum_penis]
synonym: "corpus cavernosum urethrae" RELATED DEPRECATED [Wikipedia:Corpus_spongiosum_penis]
synonym: "corpus spongiosum" RELATED [Wikipedia:Corpus_spongiosum_penis]
synonym: "spongiose body of penis" EXACT [FMA:19617]
xref: EMAPA:29850
xref: EMAPA:29856
xref: FMA:19617
xref: http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png
xref: ncithesaurus:Corpus_Spongiosum
xref: SCTID:279712008
is_a: UBERON:0005156 ! reproductive structure
is_a: UBERON:0008324 ! erectile tissue
relationship: part_of UBERON:0000989 ! penis
relationship: surrounds UBERON:0000057 ! urethra
[Term]
id: UBERON:0011184
name: epithelium of crypt of lieberkuhn
comment: Note that FMA has classes for subdivisions of this epithelium
synonym: "crypt epithelium" EXACT []
xref: ncithesaurus:Crypt_Epithelium
is_a: UBERON:0001277 ! intestinal epithelium
relationship: part_of UBERON:0001983
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001983 ! crypt of lieberkuhn
relationship: part_of UBERON:0001983 ! crypt of lieberkuhn
[Term]
id: UBERON:0011185
name: gastrointestinal sphincter
def: "A sphincter muscle that is part of the gastrointestinal system" [OBOL:automatic]
xref: ncithesaurus:Gastrointestinal_Sphincter
is_a: UBERON:0004590 ! sphincter muscle
relationship: part_of UBERON:0005409
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0005409 ! gastrointestinal system
relationship: part_of UBERON:0005409 ! gastrointestinal system
[Term]
id: UBERON:0011186
name: Krause's gland
def: "small, mucous accessory lacrimal glands that are found underneath the eyelid where the upper and lower conjuctivae meet. Their ducts unite into a rather long sinus which open into the fornix conjunctiva. There are approximately forty Krause glands in the region of the upper eyelid, and around 6 to 8 in the region of the lower lid. The function of these glands are to produce tears which are secreted onto the surface of the conjuctiva" [Wikipedia:Krause's_glands]
synonym: "accessory lacrimal gland" BROAD [FMA:59056]
synonym: "conjunctival gland" BROAD [FMA:59056]
synonym: "Krause gland" EXACT [FMA:59056]
xref: FMA:59056
xref: ncithesaurus:Gland_of_Krause
xref: SCTID:23492003
xref: SCTID:278359007
is_a: UBERON:0001817 ! lacrimal gland
relationship: part_of UBERON:0001351 {source="ncithesaurus"} ! lacrimal sac
[Term]
id: UBERON:0011187
name: greater tubercle of humerus
def: "The greater tubercle of the humerus is situated lateral to the head of the humerus and posteriolateral to the lesser tubercle. Its upper surface is rounded and marked by three flat impressions. the highest of these gives (\"superior facet\") insertion to the Supraspinatus the middle (\"middle facet\") to the Infraspinatus. the lowest one (\"inferior facet\"), and the body of the bone for about 2.5 cm. below it, to the Teres minor. The lateral surface of the greater tubercle is convex, rough, and continuous with the lateral surface of the body. Between the greater tubercle and the lesser tubercle is the intertubercular sulcus (bicipital groove)." [Wikipedia:Greater_tubercle]
synonym: "greater tubercle" EXACT [FMA:23390]
synonym: "greater tubercle of the humerus" RELATED [Wikipedia:Greater_tubercle]
synonym: "greater tuberosity" RELATED [Wikipedia:Greater_tubercle]
synonym: "greater tuberosity of humerus" EXACT [FMA:23390]
synonym: "tuberculum majus" EXACT [FMA:TA]
synonym: "tuberculum majus humeri" EXACT [Wikipedia:Greater_tubercle]
xref: FMA:23390
xref: http://upload.wikimedia.org/wikipedia/commons/3/3b/Gray326.png
xref: ncithesaurus:Greater_Tuberosity
xref: SCTID:181934009
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005813 {source="FMA"} ! tubercle
relationship: part_of UBERON:0004411 {source="FMA"} ! proximal epiphysis of humerus
[Term]
id: UBERON:0011188
name: lesser tubercle of humerus
def: "The lesser tubercle of the humerus, although smaller, is more prominent than the greater tubercle: it is situated in front, and is directed medially and anteriorly. Above and in front it presents an impression for the insertion of the tendon of the Subscapularis." [Wikipedia:Lesser_tubercle]
synonym: "lesser tubercle" EXACT [FMA:23393]
synonym: "lesser tubercle of humerus" RELATED [Wikipedia:Lesser_tubercle]
synonym: "lesser tubercle of the humerus" RELATED [Wikipedia:Lesser_tubercle]
synonym: "lesser tuberosity of humerus" EXACT [FMA:23393]
synonym: "tuberculum minus" EXACT [FMA:TA]
xref: FMA:23393
xref: http://upload.wikimedia.org/wikipedia/commons/3/31/Tuberculumminushumeri.png
xref: ncithesaurus:Lesser_Tuberosity
xref: SCTID:181935005
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005813 {source="FMA"} ! tubercle
relationship: part_of UBERON:0004411 {source="FMA"} ! proximal epiphysis of humerus
[Term]
id: UBERON:0011189
name: lamina propria of large intestine
synonym: "lamina propria of mucosa of large intestine" EXACT [FMA:15654]
synonym: "large intestinal lamina propria" EXACT []
synonym: "large intestine lamina propria" EXACT [FMA:15654]
xref: FMA:15654
xref: ncithesaurus:Large_Intestinal_Lamina_Propria
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004780 ! gastrointestinal system lamina propria
relationship: part_of UBERON:0000059
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001207 {source="FMA"} ! mucosa of large intestine
[Term]
id: UBERON:0011190
name: lunule of nail
def: "A crescent-shaped whitish area of the bed of a fingernail or toenail. The lunula is the visible part of the nail matrix (i.e. the root of the nail)." [Wikipedia:unula_(anatomy)]
synonym: "lunula" EXACT []
synonym: "nail lunule" EXACT [FMA:77858]
xref: FMA:77858
xref: ncithesaurus:Lunula
xref: SCTID:300538005
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0001705 ! nail
[Term]
id: UBERON:0011191
name: ophthalmic vein
def: "Ophthalmic veins are veins which drain the eye. More specifically, they can refer to: Superior ophthalmic vein Inferior ophthalmic vein" [Wikipedia:Ophthalmic_veins]
synonym: "opthalmic vein" EXACT [EHDAA2:0004113]
synonym: "vena ophthalmica" RELATED [Wikipedia:Ophthalmic_veins]
xref: EHDAA2:0004113
xref: EMAPA:19313
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray572.png
xref: XAO:0004169
is_a: UBERON:0009141 {source="EHDAA2-modified"} ! craniocervical region vein
[Term]
id: UBERON:0011192
name: superior ophthalmic vein
def: "The superior ophthalmic vein begins at the inner angle of the orbit in a vein named the nasofrontal which communicates anteriorly with the angular vein; it pursues the same course as the ophthalmic artery, and receives tributaries corresponding to the branches of that vessel. Forming a short single trunk, it passes between the two heads of the Rectus lateralis and through the medial part of the superior orbital fissure, and ends in the cavernous sinus. The ethmoidal veins drain into the superior ophthalmic vein. Vorticose veins also drain into the superior ophthalmic vein." [Wikipedia:Superior_ophthalmic_vein]
synonym: "anterior ethmoidal vein" RELATED [Wikipedia:Superior_ophthalmic_vein]
synonym: "posterior ethmoidal vein" RELATED [Wikipedia:Superior_ophthalmic_vein]
synonym: "superior ophthalmic" RELATED [Wikipedia:Superior_ophthalmic_vein]
synonym: "superior opthalmic vein" RELATED []
xref: FMA:51246
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray572.png
xref: SCTID:149481004
is_a: UBERON:0011191 ! ophthalmic vein
[Term]
id: UBERON:0011193
name: inferior ophthalmic vein
def: "The inferior ophthalmic vein begins in a venous net-work at the forepart of the floor and medial wall of the orbit; it receives some vorticose veins and other veins from the Rectus inferior, Obliquus inferior, lacrimal sac and eyelids, runs backward in the lower part of the orbit and divides into two branches. One of these passes through the inferior orbital fissure and joins the pterygoid venous plexus, while the other enters the cranium through the superior orbital fissure and ends in the cavernous sinus, either by a separate opening, or more frequently in common with the superior ophthalmic vein." [Wikipedia:Inferior_ophthalmic_vein]
synonym: "inferior ophthalmic" RELATED [Wikipedia:Inferior_ophthalmic_vein]
synonym: "inferior opthalmic vein" RELATED []
xref: FMA:51247
xref: http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray572.png
xref: SCTID:149986001
is_a: UBERON:0011191 ! ophthalmic vein
[Term]
id: UBERON:0011194
name: ophthalmic plexus
def: "An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus." [http://www.encyclo.co.uk/define/ophthalmic%20plexus]
synonym: "ophthalmic nerve plexus" EXACT []
synonym: "ophthalmic plexus" EXACT [MA:0002185]
synonym: "opthalmic plexus" EXACT []
synonym: "plexus ophthalmicus" EXACT LATIN []
xref: MA:0002185
xref: ncithesaurus:Ophthalmic_Plexus
is_a: UBERON:0001810 {source="ncithesaurus"} ! nerve plexus
[Term]
id: UBERON:0011195
name: inferior parathyroid epithelium
xref: EHDAA2:0000824
xref: EHDAA:3868
is_a: UBERON:0011197 ! parathyroid epithelium
relationship: part_of UBERON:0006755
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0006755 ! inferior parathyroid gland
relationship: develops_from UBERON:0010025 {source="EHDAA2"} ! dorsal part of pharyngeal pouch 3
relationship: part_of UBERON:0006755 ! inferior parathyroid gland
[Term]
id: UBERON:0011196
name: superior parathyroid epithelium
xref: EHDAA2:0001957
xref: EHDAA:3874
is_a: UBERON:0011197 ! parathyroid epithelium
relationship: part_of UBERON:0006749
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0006749 ! superior parathyroid gland
relationship: develops_from UBERON:0007125 {source="EHDAA2"} ! pharyngeal pouch 4
relationship: part_of UBERON:0006749 ! superior parathyroid gland
[Term]
id: UBERON:0011197
name: parathyroid epithelium
xref: ncithesaurus:Parathyroid_Gland_Epithelial_Tissue
is_a: UBERON:0000486 {source="EHDAA2-abduced"} ! multilaminar epithelium
is_a: UBERON:0005911 ! endo-epithelium
relationship: part_of UBERON:0001132
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001132 ! parathyroid gland
relationship: develops_from UBERON:0004117 ! pharyngeal pouch
relationship: part_of UBERON:0001132 ! parathyroid gland
[Term]
id: UBERON:0011198
name: muscle layer of large intestine
synonym: "muscular coat of large intestine" EXACT [FMA:14971]
synonym: "muscular layer of large intestine" EXACT [FMA:14971]
synonym: "muscularis externa of large intestine" EXACT [FMA:14971]
synonym: "tunica muscularis intestini crassi" EXACT [FMA:TA]
xref: FMA:14971
xref: ncithesaurus:Large_Intestinal_Muscular_Coat
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0000059
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 {source="FMA"} ! wall of large intestine
[Term]
id: UBERON:0011199
name: prostatic utricle
def: "a small indentation located in the prostatic urethra, at the apex of the urethral crest, on the seminal colliculus (verumontanum), laterally flanked by openings of the ejaculatory ducts. It is also known as the vagina masculina or (in older literature) vesicula prostatica. It is often described as \"blind,\" meaning that it is a duct that does not lead to any other structures. It can sometimes be enlarged." [Wikipedia:Prostatic_utricle]
synonym: "sinus pocularis" EXACT [FMA:19702]
synonym: "uterus masculinus" EXACT [FMA:19702]
synonym: "uterus masculinus" RELATED [Wikipedia:Prostatic_utricle]
synonym: "utricle of prostate" EXACT [FMA:19702]
synonym: "utriculus of prostate" EXACT [FMA:19702]
synonym: "utriculus prostaticus" RELATED [Wikipedia:Prostatic_utricle]
synonym: "vagina masculina" EXACT [FMA:19702]
synonym: "vagina masculina" RELATED [Wikipedia:Prostatic_utricle]
synonym: "vesicula prostatica" RELATED [Wikipedia:Prostatic_utricle]
xref: FMA:19702
xref: http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray1153.png
xref: ncithesaurus:Prostatic_Utricle
xref: SCTID:197909004
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006554 ! urinary system structure
relationship: part_of UBERON:0001335 {source="FMA"} ! prostatic urethra
[Term]
id: UBERON:0011200
name: sacrococcygeal symphysis
def: "The sacrococcygeal symphysis (sacrococcygeal articulation, articulation of the sacrum and coccyx) is an amphiarthrodial joint, formed between the oval surface at the apex of the sacrum, and the base of the coccyx. It is a slightly moveable joint which is frequently, partially or completely, obliterated in old age, homologous with the joints between the bodies of the vertebrae." [Wikipedia:Sacrococcygeal_symphysis]
synonym: "sacrococcygeal joint" EXACT [FMA:16210]
synonym: "sacrococcygeal joint" RELATED [Wikipedia:Sacrococcygeal_symphysis]
xref: FMA:16210
xref: http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray320.png
xref: ncithesaurus:Sacrococcygeal_Joint
is_a: UBERON:0001468 {source="FMA"} ! intervertebral joint
relationship: connects UBERON:0001350
relationship: connects UBERON:0003690
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: connects UBERON:0001350 ! coccyx
intersection_of: connects UBERON:0003690 ! sacrum
relationship: connects UBERON:0001350 ! coccyx
relationship: connects UBERON:0003690 ! sacrum
[Term]
id: UBERON:0011201
name: muscle layer of small intestine
synonym: "muscular coat of small intestine" EXACT [FMA:14932]
synonym: "muscular layer of small intestine" EXACT [FMA:14932]
synonym: "muscularis externa of small intestine" EXACT [FMA:14932]
synonym: "small intestine muscularis propria" EXACT [FMA:14932]
synonym: "tunica muscularis (intestinum tenue)" EXACT [FMA:14932]
synonym: "tunica muscularis intestini tenuis" EXACT [FMA:TA]
xref: FMA:14932
xref: ncithesaurus:Small_Intestinal_Muscular_Coat
xref: SCTID:362145004
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0006660 ! muscle layer
relationship: part_of UBERON:0002108
intersection_of: UBERON:0006660 ! muscle layer
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001168 {source="FMA"} ! wall of small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0011202
name: urachus epithelium
xref: EHDAA2:0004725
xref: ncithesaurus:Urachal_Epithelium
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube
is_a: UBERON:0005911 ! endo-epithelium
is_a: UBERON:0006555 ! excretory tube
relationship: part_of UBERON:0002068
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002068 ! urachus
relationship: part_of UBERON:0002068 ! urachus
[Term]
id: UBERON:0011203
name: urachus mesenchyme
xref: EHDAA2:0004726
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0006554 ! urinary system structure
is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue
relationship: part_of UBERON:0002068
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002068 ! urachus
relationship: part_of UBERON:0002068 ! urachus
[Term]
id: UBERON:0011204
name: rectovesical pouch
def: "Between the rectum and the bladder the peritoneal cavity forms, in the male, a pouch, the rectovesical excavation (or rectovesical pouch), the bottom of which is slightly below the level of the upper ends of the vesiculae seminalesbi. e. , about 7.5 cm. from the orifice of the anus. its lowest part membranous partition called Rectoprostatic fascia. The corresponding structure in women is the rectouterine pouch." [Wikipedia:Recto-vesical_pouch]
synonym: "excavatio rectovesicalis" EXACT [FMA:TA]
synonym: "excavatio rectovesicalis" RELATED [Wikipedia:Recto-vesical_pouch]
synonym: "recto-vesical pouch" EXACT [FMA:14727]
synonym: "rectovesical" RELATED [Wikipedia:Recto-vesical_pouch]
synonym: "rectovesical excavation" RELATED [Wikipedia:Recto-vesical_pouch]
synonym: "rectovesical pouch" RELATED [Wikipedia:Recto-vesical_pouch]
synonym: "rectovesical space" EXACT [FMA:14727]
synonym: "retrovesical excavation" RELATED [Wikipedia:Recto-vesical_pouch]
xref: FMA:14727
xref: http://upload.wikimedia.org/wikipedia/commons/4/45/Gray1228.png
xref: ncithesaurus:Recto-Vesical_Pouch
xref: SCTID:261416006
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0002358 ! peritoneum
[Term]
id: UBERON:0011205
name: carpometacarpus
def: "The carpometacarpus is the fusion of the carpal and metacarpal bone, essentially a single fused bone between the wrist and the knuckles. It is a smallish bone in most birds, generally flattened and with a large hole in the middle. In flightless birds, however, its shape may be slightly different, or it might be absent entirely." [Wikipedia:Carpometacarpus]
property_value: "has_fused_element" UBERON:0001435
property_value: "has_fused_element" UBERON:0002374
is_a: UBERON:0005897 ! hand bone
relationship: part_of UBERON:0001442 ! skeleton of hand
[Term]
id: UBERON:0011206
name: hinge joint
def: "A joint that allows motion around an axis." [BTO:0004707, Wikipedia:Hinge_joint]
synonym: "ginglymus" RELATED [BTO:0004707]
xref: BTO:0004707
xref: galen:HingeJoint
xref: http://upload.wikimedia.org/wikipedia/commons/4/4b/Gelenke_Zeichnung01.jpg
xref: SCTID:335391000
is_a: UBERON:0000982 {source="BTO"} ! skeletal joint
[Term]
id: UBERON:0011207
name: iliocostalis lumborum
def: "The iliocostalis lumborum (iliocostalis muscle; sacrolumbalis muscle) is inserted, by six or seven flattened tendons, into the inferior borders of the angles of the lower six or seven ribs." [Wikipedia:Iliocostalis#Iliocostalis_lumborum]
synonym: "sacrolumbalis" RELATED [Wikipedia:Iliocostalis]
synonym: "sacrolumbalis muscle" RELATED [Wikipedia:Iliocostalis]
xref: FMA:22702
xref: SCTID:244855009
is_a: UBERON:0002251 {source="FMA"} ! iliocostalis muscle
[Term]
id: UBERON:0011208
name: medial migration pathway NC-derived mesenchyme
synonym: "medial migration pathway" RELATED []
synonym: "medial migration pathway mesenchyme" EXACT [ZFA:0000786]
xref: EHDAA2:0001075
xref: EHDAA:1747
xref: EMAPA:16597
xref: TAO:0000786
xref: ZFA:0000786
is_a: UBERON:0011210 ! migration pathway NC-derived mesenchyme
[Term]
id: UBERON:0011209
name: lateral migration pathway NC-derived mesenchyme
synonym: "lateral migration pathway" RELATED []
synonym: "lateral migration pathway mesenchyme" EXACT [ZFA:0000992]
xref: EHDAA2:0000915
xref: EHDAA:1745
xref: EMAPA:16596
xref: TAO:0000992
xref: ZFA:0000992
is_a: UBERON:0011210 ! migration pathway NC-derived mesenchyme
[Term]
id: UBERON:0011210
name: migration pathway NC-derived mesenchyme
synonym: "migration pathway mesenchyme" EXACT []
synonym: "NC migration pathway" RELATED []
is_a: UBERON:0007214 ! mesenchyme derived from trunk neural crest
is_a: UBERON:0007530 {source="EHDAA2-abduced"} ! migrating mesenchyme population
relationship: develops_from UBERON:0007214 {source="ZFA-abduced", source="EHDAA2-abduced"} ! mesenchyme derived from trunk neural crest
relationship: part_of UBERON:0007214 {source="EHDAA2-abduced"} ! mesenchyme derived from trunk neural crest
[Term]
id: UBERON:0011213
name: root of vagus nerve
comment: FMA distinguishes between roots and rootlets - we mix the two here
synonym: "rootlet of vagus nerve" EXACT [FMA:6213]
synonym: "rX" BROAD [ZFA:0007011]
synonym: "vagal root" EXACT [ZFA:0007011]
synonym: "vagus nerve root" EXACT [NIF_GrossAnatomy:birnlex_1456]
synonym: "vagus neural rootlet" RELATED [FMA:6213]
synonym: "vagus root" EXACT [ZFA:0007011]
xref: FMA:6213
xref: NIF_GrossAnatomy:birnlex_1456
xref: ZFA:0007011
is_a: UBERON:0004732 ! segmental subdivision of nervous system
is_a: UBERON:0006843 ! root of cranial nerve
relationship: part_of UBERON:0001759
intersection_of: UBERON:0006843 ! root of cranial nerve
intersection_of: part_of UBERON:0001759 ! vagus nerve
relationship: part_of UBERON:0001759 ! vagus nerve
[Term]
id: UBERON:0011214
name: nucleus of midbrain tectum
synonym: "nucleus of tectum" EXACT [FMA:258766]
synonym: "tectal nucleus" BROAD []
xref: FMA:258766
is_a: UBERON:0002966 ! regional part of midbrain tectum
is_a: UBERON:0009661 ! midbrain nucleus
relationship: part_of UBERON:0002314
intersection_of: UBERON:0000125 ! neural nucleus
intersection_of: part_of UBERON:0002314 ! midbrain tectum
relationship: part_of UBERON:0002314 ! midbrain tectum
[Term]
id: UBERON:0011215
name: cell part cluster of neuraxis
synonym: "neuraxis layer" EXACT [FMA:83143]
xref: FMA:83143
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005162 ! multi cell component structure
relationship: part_of UBERON:0001017
intersection_of: UBERON:0005162 ! multi cell component structure
intersection_of: part_of UBERON:0001017 ! central nervous system
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0011216
name: organ system subdivision
def: "Anatomical structure, which consists of a specific set of the members of (predominantly) one organ or organ part subclass interconnected by zones of continuity or body substances; is demarcated from other subdivisions of the same organ system by one or more zones of continuity or anatomical lines; together with other subdivisions of the same organ system, it constitutes an organ system. Examples: rib cage, facial skeleton, portal system, central nervous system, upper respiratory tract, muscle group of back." [FMA:67509]
xref: FBbt:00007330
xref: FMA:67509
xref: SCTID:91690000
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0011217
name: serratus posterior
synonym: "serratus posterior muscle" EXACT [FMA:13400]
xref: FMA:13400
xref: SCTID:244934006
is_a: UBERON:0004518 {source="FMA"} ! muscle of vertebral column
relationship: has_muscle_insertion UBERON:0002228 {source="dbpedia-abduced"} ! rib
relationship: has_muscle_nerve UBERON:0003727 {source="dbpedia-abduced"} ! intercostal nerve
[Term]
id: UBERON:0011218
name: spinalis cervicis muscle
def: "Origin: spinous processes of seventh cervical and sometimes two upper thoracic vertebrae; insertion: spinous processes of axis and sometimes of second to fourth cervical vertebrae; innervation: branches of cervical; action: extends vertebral column." [BTO:0002623]
comment: The Spinalis cervicis (Spinalis colli) is an inconstant muscle, which arises from the lower part of the ligamentum nuchæ, the spinous process of the seventh cervical, and sometimes from the spinous processes of the first and second thoracic vertebrae, and is inserted into the spinosus process of the axis, and occasionally into the spinous processes of the two vertebrae below it. [Wikipedia:Spinalis#Spinalis_cervivis]
synonym: "musculus spinalis cervicis" RELATED [BTO:0002623]
synonym: "spinal muscle of neck" EXACT [BTO:0002623]
xref: BTO:0002623
xref: SCTID:244864004
is_a: UBERON:0011013 {source="BTO"} ! spinalis muscle
relationship: has_muscle_origin UBERON:0000351 {source="dbpedia", notes="also spinous process of C7"} ! nuchal ligament
[Term]
id: UBERON:0011219
name: longissimus lumborum muscle
def: "Lumbar muscle that extends and rotates the vertebral column." [BTO:0001925]
synonym: "longissimus lumborum" EXACT [MA:0002338]
synonym: "musculus longissimus lumborum" RELATED [BTO:0001925]
xref: BTO:0001925
xref: MA:0002338
xref: ncithesaurus:Longissimus_Lumborum
is_a: UBERON:0000392 ! longissimus muscle
[Term]
id: UBERON:0011220
name: mastoid process of temporal bone
def: "The mastoid process is a conical prominence projecting from the undersurface of the mastoid portion of the temporal bone. It is located just behind the external acoustic meatus, and lateral to the styloid process. Its size and form vary somewhat; it is larger in the male than in the female. This process serves for the attachment of the posterior belly of the digastric, sternocleidomastoid, splenius capitis, and longissimus capitis muscles. The word is derived from the Greek 'masto-', alluding to its resemblance to the breast." [Wikipedia:Mastoid_process]
synonym: "mastoid" RELATED [Wikipedia:Mastoid_process]
synonym: "mastoid process" EXACT [FMA:52872]
synonym: "mastoid process of skull" EXACT []
synonym: "processus mastoideus ossis temporalis" RELATED [Wikipedia:Mastoid_process]
xref: FMA:52872
xref: ncithesaurus:Mastoid_Process
xref: SCTID:304336002
is_a: UBERON:0000075 {source="ncithesaurus"} ! subdivision of skeletal system
relationship: part_of UBERON:0001678 {source="ncithesaurus"} ! temporal bone
[Term]
id: UBERON:0011221
name: ora serrata of retina
def: "The ora serrata is the serrated junction between the retina and the ciliary body. This junction marks the transition from the simple non-photosensitive area of the retina to the complex, multi-layered photosensitive region. In animals in which the region does not have a serrated appearance, it is called the ora ciliaris retinae." [Wikipedia:Ora_serrata]
synonym: "ora ciliaris retina" RELATED [Wikipedia:Ora_serrata]
synonym: "ora ciliaris retinae" RELATED [Wikipedia:Ora_serrata]
synonym: "ora serrata" EXACT [FMA:58600]
synonym: "ora serrata retinae" EXACT [FMA:TA]
xref: FMA:58600
xref: SCTID:280612002
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0007651 ! anatomical junction
relationship: connects UBERON:0000966 ! retina
relationship: connects UBERON:0001775 ! ciliary body
relationship: part_of UBERON:0001766 ! anterior chamber of eyeball
[Term]
id: UBERON:0011222
name: intra-ocular muscle
synonym: "intrinsic muscle of eyeball" EXACT []
synonym: "intrinsic ocular muscle" EXACT [EMAPA:18808]
xref: AAO:0010038
xref: EMAPA:18808
xref: FMA:49150
property_value: UBPROP:0000001 "Muscles within the eye (bulbus oculi).[AAO]" xsd:string
is_a: UBERON:0004277 ! eye muscle
relationship: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0003386 {source="EMAPA"} ! smooth muscle of eye
[Term]
id: UBERON:0011233
name: synovial membrane of synovial tendon sheath
def: "Synovial sac which surrounds parts of one or more tendons . Examples: synovial tendon sheath of index finger, radial bursa." [FMA:45087, Wikipedia:Synovial_sheath]
comment: Alternate def: A synovial sheath is a layer of a tendon sheath containing tendons in the hand and foot. They lie internal to the fibrous tendon sheaths. An example is the common synovial sheath for the flexor tendons. [Wikipedia:Synovial_sheath]
synonym: "synovium" BROAD [BTO:0001823]
xref: BTO:0001823
xref: FMA:40878
is_a: UBERON:0007616 {source="FMA"} ! layer of synovial tissue
relationship: part_of UBERON:0000304 ! tendon sheath
[Term]
id: UBERON:0011234
name: fibrous membrane of synovial tendon sheath
xref: FMA:40877
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0000304 ! tendon sheath
[Term]
id: UBERON:0011236
name: deep fascia
def: "Deep fascia (or \"investing fascia\") is a layer of fascia which can surround individual muscles, and divide groups of muscles into compartments. This is the dense fibrous connective tissue that interpenetrates and surrounds the muscles, bones, nerves and blood vessels of the body. It provides connection and communication in the form of aponeuroses, ligaments, tendons, retinacula, joint capsules, and septa. The deep fasciae envelop all bone; cartilage, and blood vessels and become specialized in muscles and nerves. The high density of collagen fibers is what gives the deep fascia its strength and integrity. The amount of elastin fiber determines how much extensibility and resilience it will have." [Wikipedia:Deep_fascia]
synonym: "deep investing fascia" RELATED [Wikipedia:Deep_fascia]
synonym: "fascia profunda" RELATED LATIN [Wikipedia:Deep_fascia]
synonym: "investing fascia" RELATED [Wikipedia:Deep_fascia]
xref: FMA:27935
xref: ncithesaurus:Deep_Fascia
is_a: UBERON:0008982 ! fascia
[Term]
id: UBERON:0011237
name: visceral fascia
def: "Visceral fascia suspends the organs within their cavities and wraps them in layers of connective tissue membranes. Each of the organs is covered in a double layer of fascia; these layers are separated by a thin serous membrane. The outermost wall of the organ is known as the parietal layer The skin of the organ is known as the visceral layer. The organs have specialized names for their visceral fasciae. In the brain, they are known as meninges; in the heart they are known as pericardia; in the lungs, they are known as pleura; and in the abdomen, they are known as peritonea." [Wikipedia:Visceral_fascia]
synonym: "parietal fascia" RELATED [Wikipedia:Visceral_fascia]
xref: FMA:76754
is_a: UBERON:0008982 ! fascia
[Term]
id: UBERON:0011238
name: mesethmoid bone
def: "Endochondral bone that extends forward from the frontal bones and articulates posterolaterally with the lateral ethmoids and the vomer and parasphenoid ventrally. The mesethmoid is an unpaired median bone." [TAO:0000323]
comment: absent in primitive mammals, ungulates, amphibians, reptiles/birds[Kardong]
synonym: "ethmoid" RELATED [TAO:0000323]
xref: TAO:0000323
xref: ZFA:0000323
is_a: UBERON:0002513 {source="TAO"} ! endochondral bone
is_a: UBERON:0010892 ! mesethmoid element
is_a: UBERON:0011164 ! neurocranium bone
relationship: develops_from UBERON:0005945 {source="TAO"} ! neurocranial trabecula
relationship: overlaps UBERON:0001703 {source="TAO"} ! neurocranium
relationship: part_of UBERON:0002241 {source="TAO"} ! chondrocranium
relationship: part_of UBERON:0011241 {source="Kardong"} ! ethmoid region
[Term]
id: UBERON:0011241
name: ethmoid region
def: "the most anterior region of the braincase. Provides structural support for peripheral olfactory organ." [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html, UBERONREF:0000007]
comment: Usage notes: currently this is not restricted to skeletal elements, unlike UBERONREF:0000007
xref: AAO:0000986
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: has_developmental_contribution_from UBERON:0005945 ! neurocranial trabecula
relationship: part_of UBERON:0003112 ! olfactory region
[Term]
id: UBERON:0011242
name: ethmoid cartilage
def: "Region between capsules formed by anterior tips of neurocranial trabeculae." [ISBN10:0073040584]
comment: We assume the AAO structure is cartilage
synonym: "ethmoid plate" RELATED [TAO:0001405]
xref: AAO:0010134
xref: TAO:0001405
xref: ZFA:0001405
property_value: UBPROP:0000001 "Anterior wall of the braincase.[AAO]" xsd:string
property_value: UBPROP:0000001 "Chondrocranium cartilage that is initially plate-like and formed from the anterior fusion of the trabecula crani. The ethmoid cartilage is paired.[TAO]" xsd:string
is_a: UBERON:0003932 {source="TAO"} ! cartilaginous element of chondrocranium
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: develops_from UBERON:0005945 {source="Kardong"} ! neurocranial trabecula
relationship: overlaps UBERON:0001703 {source="TAO"} ! neurocranium
relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium
relationship: part_of UBERON:0011241 {source="AAO"} ! ethmoid region
[Term]
id: UBERON:0011244
name: perpendicular plate of ethmoid
def: "The perpendicular plate of the ethmoid bone (vertical plate) is a thin, flattened lamina, polygonal in form, which descends from the under surface of the cribriform plate, and assists in forming the septum of the nose; it is generally deflected a little to one or other side. The anterior border articulates with the spine of the frontal bone and the crest of the nasal bones. The posterior border articulates by its upper half with the sphenoidal crest, by its lower with the vomer. The inferior border is thicker than the posterior, and serves for the attachment of the septal cartilage of the nose. The surfaces of the plate are smooth, except above, where numerous grooves and canals are seen; these lead from the medial foramina on the cribriform plate and lodge filaments of the olfactory nerves." [Wikipedia:Perpendicular_plate_of_ethmoid_bone]
synonym: "lamina perpendicularis (os ethmoidale)" EXACT [FMA:52891]
synonym: "lamina perpendicularis of ethmoid bone" EXACT [FMA:52891]
synonym: "lamina perpendicularis ossis ethmoidalis" RELATED [Wikipedia:Perpendicular_plate_of_ethmoid_bone]
synonym: "perpendicular plate" BROAD [EMAPA:25114]
synonym: "perpendicular plate of the ethmoid bone" RELATED [Wikipedia:Perpendicular_plate_of_ethmoid_bone]
synonym: "vertical plate of the ethmoid bone" RELATED [Wikipedia:Perpendicular_plate_of_ethmoid_bone]
xref: EMAPA:25114
xref: FMA:52891
xref: SCTID:369005006
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 {source="cjm"} ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001679 {source="FMA"} ! ethmoid bone
[Term]
id: UBERON:0011245
name: infra-orbital canal of maxilla
def: "One of the canals of the orbital surface of the maxilla, the infraorbital canal, opens just below the margin of the orbit." [Wikipedia:Infraorbital_canal]
synonym: "canalis infra-orbitalis" EXACT LATIN [FMA:59048]
synonym: "canalis infraorbitalis" EXACT LATIN [FMA:59048]
synonym: "infra-orbital canal" BROAD [FMA:59048]
synonym: "infraorbital canal" BROAD [Wikipedia:Infraorbital_canal]
xref: FMA:59048
is_a: UBERON:0005744 {source="FMA"} ! cranial conduit
[Term]
id: UBERON:0011246
name: procoracoid bone
comment: In primitive synapsis 3 centers develop in the shoulder: the dorsal center gives rise to the scapula and the two ventral centers produce an anterior coracoid (procoracoid) and posterior coracoid (coracoid). The anterior is homologous to the coracoid of fish[Kardong]. Editor notes: VSAO sais that the procoracoid+coracoid are homologous to the teleost coracoid. Consider adding a separate class for posterior coracoid.
synonym: "anterior coracoid" RELATED [ISBN10:0073040584]
synonym: "anterior coracoid bone" RELATED [ISBN10:0073040584]
synonym: "precoracoid" RELATED []
synonym: "precoracoid bone" RELATED [ISBN10:0073040584]
synonym: "procoracoid" RELATED []
synonym: "procoracoid process" NARROW []
xref: http://upload.wikimedia.org/wikipedia/commons/7/79/P.gigas_forelimb.jpg
property_value: "homologous_to" UBERON:0004743
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0007829 ! pectoral girdle bone
is_a: UBERON:0011248 ! procoracoid element
relationship: develops_from UBERON:0011247 ! procoracoid cartilage
relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle
[Term]
id: UBERON:0011247
name: procoracoid cartilage
is_a: UBERON:0007844 ! cartilaginous element
is_a: UBERON:0011248 ! procoracoid element
relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle
[Term]
id: UBERON:0011248
name: procoracoid element
synonym: "anterior coracoid" RELATED [ISBN10:0073040584]
synonym: "precoracoid" RELATED [ISBN10:0073040584]
synonym: "precoracoid" RELATED [AAO:0000760]
synonym: "procoracoid" EXACT [AAO:0000760]
xref: AAO:0000760
property_value: UBPROP:0000001 "Cartilaginous, paired structures located on the anterolateral portions of the zonal area of the pectoral girdle.[AAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of zonal element (AAO:0000936)[AAO]" xsd:string
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0007831 ! skeleton of pectoral girdle
[Term]
id: UBERON:0011249
name: appendicular skeletal system
def: "Subdivision of the skeletal system which consists of the appendicular skeleton plus associated joints." [UBERON:cjm]
xref: FMA:7484
xref: VHOG:0001666
xref: VSAO:0000306
property_value: UBPROP:0000001 "Skeletal system which consists of the appendicular skeleton plus associated joints.[VSAO]" xsd:string
is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system
[Term]
id: UBERON:0011250
name: autopod bone
is_a: UBERON:0002428 ! limb bone
relationship: part_of UBERON:0002470
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002470 ! autopod region
relationship: part_of UBERON:0002470 ! autopod region
relationship: part_of UBERON:0006717 ! skeleton of autopod
[Term]
id: UBERON:0011251
name: levator claviculae muscle
def: "A skeletal muscle in the posterior triangle of the neck. It originates on the transverse processes of the upper cervical vertebrae and is inserted in the lateral half of the clavicle" [Wikipedia:Levator_claviculae_muscle]
comment: Taxon notes: The levator claviculae is an infrequently recognized anatomical variant in humans, distinguished from, for example, cervical adenopathy or a thrombosed vein, but a normal muscle in lower mammals and anthropoids. In humans, when present, it often appears unilaterally, most commonly on the left side, or bilaterally.[WP]
synonym: "cleidocervicalis" EXACT [Wikipedia:Levator_claviculae_muscle]
synonym: "cleidocervicalis muscle" EXACT [Wikipedia:Levator_claviculae_muscle]
synonym: "levator claviculae" EXACT [Wikipedia:Levator_claviculae_muscle]
synonym: "musculus levator claviculae" EXACT LATIN [Wikipedia:Levator_claviculae_muscle]
synonym: "omocervicalis" EXACT [Wikipedia:Levator_claviculae_muscle]
synonym: "pars cervicalis" RELATED []
synonym: "tracheloacromial muscle" EXACT [Wikipedia:Levator_claviculae_muscle]
property_value: UBPROP:0000001 "Cleidocervicalis is one of two muscles, which make up the cleidocephalic component of the complex brachiocephalic muscle. It is a thin triangular muscle which has a broad origin on the median raphe of the mid dorsal aspect of the neck. The muscle is bounded caudally by the trapezius and cranially by the occipital component of the sternocephalicus . The cleidocervicalis tapers as it passes ventrally across the side of the neck to insert into the clavicular tendon. It is innervated by the accessory nerve. The brachiocephalic complex advances the limb, extends the shoulder joint and fixes the neck." xsd:string
is_a: UBERON:0002377 ! muscle of neck
is_a: UBERON:0004518 ! muscle of vertebral column
relationship: has_muscle_insertion UBERON:0001105 {notes="lateral half", source="Wikipedia"} ! clavicle
relationship: has_muscle_origin UBERON:0001077 {notes="nterior portion of transverse processes of C1 - C4 vertebrae", source="dbpedia"} ! transverse process of vertebra
relationship: has_muscle_origin UBERON:0002413 ! cervical vertebra
relationship: part_of UBERON:0011364 ! cleidocephalicus muscle
[Term]
id: UBERON:0011252
name: scent gland
def: "Exocrine glands in animals which secrete scents which either repel or attract other animals, e.g. perianal glands of skunks, anal glands of weasels, musk glands of foxes, ventral glands of wood rats, and dorsal glands of peccaries." [MESH:A.13.820]
xref: BTO:0002068
xref: MESH:A.13.820
is_a: UBERON:0002530 ! gland
[Term]
id: UBERON:0011253
name: gland of anal sac
def: "." [Wikipedia:Anal_gland]
synonym: "anal gland" RELATED []
synonym: "musk gland" RELATED []
xref: ncithesaurus:Anal_Gland
xref: SCTID:91610001
is_a: UBERON:0002365 ! exocrine gland
is_a: UBERON:0003408 ! gland of gut
is_a: UBERON:0011252 ! scent gland
relationship: part_of UBERON:0008978
intersection_of: UBERON:0002365 ! exocrine gland
intersection_of: part_of UBERON:0008978 ! anal sac
relationship: part_of UBERON:0008978 ! anal sac
[Term]
id: UBERON:0011255
name: Eimer's organ
def: "sensory organs in which the epidermis is modified to form bulbous papillae. present in many moles, and are particularly common in the star-nosed mole, which bears 30,000 of them on its unique tentacled snout. The organs are formed from a stack of epidermal cells, which is innervated by nerve processes from myelinated fibers in the dermis, which form terminal swellings just below the outer keratinized layer of epidermis. They contain a Merkel cell-neurite complex in the epidermis and a lamellated corpuscle in the dermal connective tissue." [Wikipedia:Eimer's_organ]
is_a: UBERON:0000020 {source="Wikipedia"} ! sense organ
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000412 ! dermal papilla
[Term]
id: UBERON:0011256
name: rhinarium
def: "crenelated area around nostrils of some mammals" [Wikipedia:Rhinarium]
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0007827 ! external nose
[Term]
id: UBERON:0011263
name: femoral gland
is_a: UBERON:0002365 ! exocrine gland
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0011264
name: femoral pore
def: "Femoral pores are a part of a holocrine secretory gland found on the inside of the thighs of certain lizards and amphisbaenians which releases pheromones to attract mates or mark territory. In certain species only the male has these pores and in other species, both sexes have them, with the males being larger.[1] Femoral pores appear as a series of pits or holes within a row of scales on the ventral portion of the animal's thigh." [Wikipedia:Femoral_pore]
comment: Taxon notes: Femoral pores are present in all genera in the families Cordylidae, Crotaphytidae, Hoplocercidae, Iguanidae, Phrynosomatidae, and Xantusiidae.[1] They are absent in all genera in the Anguidae, Chamaeleonidae, Dibamidae, Helodermatidae, Scincidae, Xenosauridae, and Varanidae families.[1] They are present in other lizards and amphisbaenians quite variably, some geckoes, Phelsuma, for example have these pores, others in the same family do not[WP]
is_a: UBERON:0000161 ! orifice
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0011263
intersection_of: UBERON:0000161 ! orifice
intersection_of: part_of UBERON:0011263 ! femoral gland
relationship: part_of UBERON:0011263 ! femoral gland
[Term]
id: UBERON:0011265
name: carpometacarpal joint of digit 1
def: "A carpometacarpal joint that connects to metacarpal 1. " [Wikipedia:Carpometacarpal_joint#Thumb]
comment: Taxon notes: In humans it connects the trapezium to the first metacarpal bone, plays an irreplaceable role in the normal functioning of the thumb. The most important joint connecting the wrist to the metacarpus, osteoarthritis of the TMC is a severely disabling condition; up to twenty times more common among old women than in average[WP]
synonym: "carpometacarpal joint of pollex" EXACT [FMA:35421]
synonym: "carpometacarpal joint of the thumb" RELATED [Wikipedia:Carpometacarpal_joint#Thumb]
synonym: "carpometacarpal joint of thumb" EXACT [FMA:35421]
synonym: "TMJ" RELATED INCONSISTENT [Wikipedia:Carpometacarpal_joint#Thumb]
synonym: "trapeziometacarpal joint" RELATED [Wikipedia:Carpometacarpal_joint#Thumb]
xref: FMA:35421
xref: SCTID:361843007
is_a: UBERON:0011119 ! carpometacarpal joint
relationship: connects UBERON:0003645
intersection_of: UBERON:0011119 ! carpometacarpal joint
intersection_of: connects UBERON:0003645 ! metacarpal bone of digit 1
relationship: connects UBERON:0003645 ! metacarpal bone of digit 1
[Term]
id: UBERON:0011266
name: tendon of auricularis superior
comment: Made obsolete as the ear muscle inserts into cartilage and aponeurosis without any intervening tendon
synonym: "auricularis superior tendon" EXACT [FMA:53843]
xref: FMA:53843
is_obsolete: true
[Term]
id: UBERON:0011267
name: quadratojugal bone
def: "Paired intramembranous bones that completes the maxillary arch posteriorly; they appear at the end of, or just after, metamorphosis." [AAO:0000532]
synonym: "quadratjochbeine" RELATED [AAO:0000532]
synonym: "quadrato-jugals" RELATED [AAO:0000532]
synonym: "quadrato-maxillare" RELATED [AAO:0000532]
synonym: "quadratojugal" EXACT [AAO:0000532]
synonym: "quadratojugale" RELATED [AAO:0000532]
synonym: "tympano maleaux" RELATED [AAO:0000532]
xref: AAO:0000532
xref: http://upload.wikimedia.org/wikipedia/commons/e/eb/Skull_synapsida_1.png
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Archaeopteryx_skull.png/800px-Archaeopteryx_skull.png
is_a: UBERON:0002514 {source="AAO-def"} ! intramembranous bone
is_a: UBERON:0011597 ! bone of upper jaw
relationship: part_of UBERON:0003113 {source="Kardong", notes="temporal series"} ! dermatocranium
relationship: part_of UBERON:0003277 {source="AAO"} ! skeleton of upper jaw
[Term]
id: UBERON:0011268
name: sublingua
def: "a secondary tongue located below the primary tongue in prosimian primates and some primitive mammals. This structure does not have taste buds or salivary glands" [Wikipedia:Sublingua]
synonym: "second tongue" RELATED [Wikipedia:Sublingua]
property_value: RO:0002161 NCBITaxon:9606
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0011270
name: dorsal trunk
def: "The part of the trunk that is in the dorsum[cjm]. In humans, the subdivision of trunk which is demarcated from the trunk proper by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines, the external surface of the posterior abdominal wall; together with the trunk proper, it constitutes the trunk[FMA]." [FMA:25056, UBERONREF:0000006, Wikipedia:Human_back]
synonym: "back of trunk" EXACT [FMA:25056]
synonym: "dorsal part of trunk" EXACT []
synonym: "dorsum of trunk" EXACT [FMA:25056]
synonym: "trunk back" EXACT [FMA:25056]
xref: FMA:25056
xref: MA:0000020
is_a: UBERON:0009569 {source="FMA"} ! subdivision of trunk
relationship: part_of UBERON:0001137 {source="FMA"} ! dorsum
[Term]
id: UBERON:0011271
name: caudal-sacral region of vertebral column
def: "Subdivision of vertebral column that is posterior to the sacral region and anterior to the caudal region." [UBERONREF:0000006]
comment: Definition to be reviewed for generality across tetrapods
xref: AAO:0000080
property_value: UBPROP:0000001 "Region of the vertebral column posterior to the sacrum consisting of two to four vertebrae. The last of these vertebrae is distinguished by the possession of a well-developed haemal arch; it supports the posterior part of the cloaca and marks the posterior limit of the trunk.[AAO]" xsd:string
is_a: UBERON:0006077 ! subdivision of vertebral column
[Term]
id: UBERON:0011272
name: skin basal layer
comment: Editor notes: compare with 'stratum basale of epidermis'. This class is the source for many adult structures - see WP2062. See also: 'enveloping layer of ectoderm'
synonym: "outer epithelium of body" RELATED [Wikipathways:WP2062]
xref: EHDAA2:0001845
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm
relationship: part_of UBERON:0002199 {source="EHDAA2"} ! integument
[Term]
id: UBERON:0011273
name: nail of digit 1 of forelimb
synonym: "claw of digit 1 of fore-paw" EXACT [EMAPA:18734]
synonym: "nail of thumb" EXACT [FMA:54329]
synonym: "nail plate of thumb" EXACT [FMA:54329]
synonym: "thumb nail" EXACT [FMA:54329]
xref: EMAPA:18734
xref: FMA:54329
xref: SCTID:181584008
is_a: UBERON:0009565 {source="FMA"} ! nail of forelimb digit
relationship: part_of UBERON:0001463
intersection_of: UBERON:0001705 ! nail
intersection_of: part_of UBERON:0001463 ! hand digit 1
relationship: part_of UBERON:0001463 ! hand digit 1
[Term]
id: UBERON:0011274
name: nail of digit 2 of forelimb
synonym: "claw of digit 2 of fore-paw" EXACT [EMAPA:18735]
synonym: "index finger nail" EXACT [FMA:54332]
synonym: "nail of index finger" EXACT [FMA:54332]
synonym: "nail of second finger" EXACT [FMA:54332]
synonym: "nail plate of index finger" EXACT [FMA:54332]
xref: EMAPA:18735
xref: FMA:54332
xref: SCTID:181580004
is_a: UBERON:0009565 {source="FMA"} ! nail of forelimb digit
relationship: part_of UBERON:0003622
intersection_of: UBERON:0001705 ! nail
intersection_of: part_of UBERON:0003622 ! hand digit 2
relationship: part_of UBERON:0003622 ! hand digit 2
[Term]
id: UBERON:0011275
name: nail of digit 3 of forelimb
synonym: "claw of digit 3 of fore-paw" EXACT [EMAPA:18736]
synonym: "middle finger nail" EXACT [FMA:54335]
synonym: "nail of middle finger" EXACT [FMA:54335]
synonym: "nail of third finger" EXACT [FMA:54335]
synonym: "nail plate of middle finger" EXACT [FMA:54335]
xref: EMAPA:18736
xref: FMA:54335
xref: SCTID:181581000
is_a: UBERON:0009565 {source="FMA"} ! nail of forelimb digit
relationship: part_of UBERON:0003623
intersection_of: UBERON:0001705 ! nail
intersection_of: part_of UBERON:0003623 ! hand digit 3
relationship: part_of UBERON:0003623 ! hand digit 3
[Term]
id: UBERON:0011276
name: nail of digit 4 of forelimb
synonym: "claw of digit 4 of fore-paw" EXACT [EMAPA:18737]
synonym: "nail of fourth finger" EXACT [FMA:54338]
synonym: "nail of ring finger" EXACT [FMA:54338]
synonym: "nail plate of ring finger" EXACT [FMA:54338]
synonym: "ring finger nail" EXACT [FMA:54338]
xref: EMAPA:18737
xref: FMA:54338
xref: SCTID:181582007
is_a: UBERON:0009565 {source="FMA"} ! nail of forelimb digit
relationship: part_of UBERON:0003624
intersection_of: UBERON:0001705 ! nail
intersection_of: part_of UBERON:0003624 ! hand digit 4
relationship: part_of UBERON:0003624 ! hand digit 4
[Term]
id: UBERON:0011277
name: nail of digit 5 of forelimb
synonym: "claw of digit 5 of fore-paw" EXACT [EMAPA:18738]
synonym: "little finger nail" EXACT [FMA:54341]
synonym: "nail of fifth finger" EXACT [FMA:54341]
synonym: "nail plate of little finger" EXACT [FMA:54341]
xref: EMAPA:18738
xref: FMA:54341
xref: SCTID:181583002
is_a: UBERON:0009565 {source="FMA"} ! nail of forelimb digit
relationship: part_of UBERON:0003625
intersection_of: UBERON:0001705 ! nail
intersection_of: part_of UBERON:0003625 ! hand digit 5
relationship: part_of UBERON:0003625 ! hand digit 5
[Term]
id: UBERON:0011278
name: nail of digit 1 of hindlimb
synonym: "big toe nail" EXACT [FMA:54344]
synonym: "claw of digit 1 of hind-paw" EXACT [EMAPA:18739]
synonym: "nail of big toe" EXACT [FMA:54344]
synonym: "nail of great toe" EXACT [FMA:54344]
synonym: "nail plate of big toe" EXACT [FMA:54344]
xref: EMAPA:18739
xref: FMA:54344
xref: SCTID:181592004
is_a: UBERON:0009567 {source="FMA"} ! nail of hindlimb digit
relationship: part_of UBERON:0003631
intersection_of: UBERON:0001705 ! nail
intersection_of: part_of UBERON:0003631 ! foot digit 1
relationship: part_of UBERON:0003631 ! foot digit 1
[Term]
id: UBERON:0011279
name: nail of digit 2 of hindlimb
synonym: "claw of digit 2 of hind-paw" EXACT [EMAPA:18740]
synonym: "nail of second toe" EXACT [FMA:54347]
synonym: "nail plate of second toe" EXACT [FMA:54347]
synonym: "second toe nail" EXACT [FMA:54347]
xref: EMAPA:18740
xref: FMA:54347
xref: SCTID:181593009
is_a: UBERON:0009567 {source="FMA"} ! nail of hindlimb digit
relationship: part_of UBERON:0003632
intersection_of: UBERON:0001705 ! nail
intersection_of: part_of UBERON:0003632 ! foot digit 2
relationship: part_of UBERON:0003632 ! foot digit 2
[Term]
id: UBERON:0011280
name: nail of digit 3 of hindlimb
synonym: "claw of digit 3 of hind-paw" EXACT [EMAPA:18741]
synonym: "nail of third toe" EXACT [FMA:54350]
synonym: "nail plate of third toe" EXACT [FMA:54350]
synonym: "third toe nail" EXACT [FMA:54350]
xref: EMAPA:18741
xref: FMA:54350
xref: SCTID:181594003
is_a: UBERON:0009567 {source="FMA"} ! nail of hindlimb digit
relationship: part_of UBERON:0003633
intersection_of: UBERON:0001705 ! nail
intersection_of: part_of UBERON:0003633 ! foot digit 3
relationship: part_of UBERON:0003633 ! foot digit 3
[Term]
id: UBERON:0011281
name: nail of digit 4 of hindlimb
synonym: "claw of digit 4 of hind-paw" EXACT [EMAPA:18742]
synonym: "fourth toe nail" EXACT [FMA:54353]
synonym: "nail of fourth toe" EXACT [FMA:54353]
synonym: "nail plate of fourth toe" EXACT [FMA:54353]
xref: EMAPA:18742
xref: FMA:54353
xref: SCTID:181595002
is_a: UBERON:0009567 {source="FMA"} ! nail of hindlimb digit
relationship: part_of UBERON:0003634
intersection_of: UBERON:0001705 ! nail
intersection_of: part_of UBERON:0003634 ! foot digit 4
relationship: part_of UBERON:0003634 ! foot digit 4
[Term]
id: UBERON:0011282
name: nail of digit 5 of hindlimb
synonym: "claw of digit 5 of hind-paw" EXACT [EMAPA:18743]
synonym: "little toe nail" EXACT [FMA:54356]
synonym: "nail of fifth toe" EXACT [FMA:54356]
synonym: "nail of little toe" EXACT [FMA:54356]
synonym: "nail plate of little toe" EXACT [FMA:54356]
xref: EMAPA:18743
xref: FMA:54356
xref: SCTID:181596001
is_a: UBERON:0009567 {source="FMA"} ! nail of hindlimb digit
relationship: part_of UBERON:0003635
intersection_of: UBERON:0001705 ! nail
intersection_of: part_of UBERON:0003635 ! foot digit 5
relationship: part_of UBERON:0003635 ! foot digit 5
[Term]
id: UBERON:0011283
name: epoophoron
def: "A remnant of the Mesonephric duct that can be found next to the ovary and fallopian tube." [Wikipedia:Epoophoron]
synonym: "epooephoron" RELATED [Wikipedia:Epoophoron]
synonym: "organ of rosenmueller" RELATED [Wikipedia:Epoophoron]
synonym: "organ of Rosenmuller" EXACT [FMA:18691]
synonym: "organ of rosenmuller" RELATED [Wikipedia:Epoophoron]
synonym: "organ of Rosenmüller" RELATED [Wikipedia:Epoophoron]
synonym: "parovarium" RELATED [Wikipedia:Epoophoron]
xref: FMA:18691
property_value: "sexually_homologous_to" UBERON:0001301
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0006590 {source="FMA"} ! vestigial embryonic structure
relationship: develops_from UBERON:0003074 {source="Wikipedia"} ! mesonephric duct
[Term]
id: UBERON:0011287
name: rostral organ
def: "A putative electroreceptor organ located in the medial rostral cavity in the ethmoid portion of the chondrocranium of Coelocanths. It is surrounded by an insulating layer of adipose tissue and innervated by the superficial ophthalmic nerve." [Wikipedia:Rostral_organ]
comment: classification as electric organ is putative
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010520 ! head electric organ
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0011241 ! ethmoid region
[Term]
id: UBERON:0011288
name: stomochord
def: "A flexible, hollow tube that arises in embryonic development as an outpocketing from the roof of the embryonic gut anterior to the pharynx. In adults, they extend dorsally from the pharynx into the probiscis, and serve to communicate with the oral cavity. Their walls are composed primarily of epithelial cells, but ciliated and glandular cells are also present" [Wikipedia:Stomochord]
synonym: "stomatochord" RELATED []
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: develops_from UBERON:0007026 ! primitive gut
relationship: existence_starts_during UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0011289
name: pharyngobasilar fascia
def: "The pharyngeal aponeurosis (or pharyngobasilar fascia, or fibrous coat), is situated between the mucous and muscular layers. It is thick above where the muscular fibers are wanting, and is firmly connected to the basilar portion of the occipital and the petrous portions of the temporal bones. As it descends it diminishes in thickness, and is gradually lost. It is strengthened posteriorly by a strong fibrous band, which is attached above to the pharyngeal spine on the under surface of the basilar portion of the occipital bone, and passes downward, forming a median raphe, which gives attachment to the Constrictores pharyngis." [Wikipedia:Pharyngobasilar_fascia]
synonym: "pharyngeal aponeurosis" EXACT [FMA:55074]
synonym: "pharyngeal aponeurosis" RELATED [Wikipedia:Pharyngobasilar_fascia]
xref: FMA:55074
xref: SCTID:16675008
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0006614 {source="FMA"} ! aponeurosis
relationship: part_of UBERON:0001042
intersection_of: UBERON:0006614 ! aponeurosis
intersection_of: part_of UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001042 ! chordate pharynx
[Term]
id: UBERON:0011298
name: submucosa of uterine tube
def: "The submucous layer of the wall of the uterine tube." [BTO:0002116]
synonym: "submucosa of fallopian tube" EXACT []
synonym: "submucous layer of uterine tube" RELATED [BTO:0002116]
synonym: "tela submucosa tubae uterinae" EXACT LATIN [BTO:0002116]
synonym: "uterine submucosa" RELATED []
xref: BTO:0002116
xref: SCTID:245489008
is_a: UBERON:0000009 ! submucosa
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0003889
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0003889 ! fallopian tube
relationship: part_of UBERON:0003889 ! fallopian tube
[Term]
id: UBERON:0011299
name: white matter of telencephalon
xref: FMA:83930
is_a: UBERON:0003544 ! brain white matter
relationship: part_of UBERON:0001893
intersection_of: UBERON:0002316 ! white matter
intersection_of: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0011300
name: gray matter of telencephalon
xref: FMA:83911
is_a: UBERON:0003528 ! brain grey matter
relationship: part_of UBERON:0001893
intersection_of: UBERON:0002020 ! gray matter of neuraxis
intersection_of: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0011301
name: manubrium sternum pre-cartilage condensation
synonym: "manubrium sterni pre-cartilage condensation" EXACT [EHDAA2:0001063]
xref: EHDAA2:0001063
xref: EHDAA:9563
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005256 ! trunk mesenchyme
is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation
relationship: develops_from UBERON:0006210 {source="EHDAA2"} ! body-wall mesenchyme
relationship: part_of UBERON:0000975 {source="EHDAA2"} ! sternum
[Term]
id: UBERON:0011302
name: tunicate tunic
def: "Outer covering of an animal typically consisting primarily of cellulose (tunicin) in addition to varying amounts of water, protein and carbohydrates. The tunicate is a characteristic feature of Tunicata" [ISBN:0030229073, Wikipedia:Ascidiacea#Anatomy]
comment: Taxon notes: In some species tunicin occurs in small amounts. Some species calcium salts are deposited as spicules. In ascidians, the tunic is supplied with blood vessels.
is_a: UBERON:0003102 ! surface structure
relationship: part_of UBERON:0002416 ! integumental system
relationship: part_of UBERON:0007023 ! adult organism
relationship: surrounds UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0011303
name: lamprey sucker
xref: http://purl.obolibrary.org/obo/uberon/images/lamprey_sucker_rosava_3238889218.jpg
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0011304
name: tunicate postabdomen
def: "Basalmost subdivision of a tunicate containing the heart and reproductive organs" [ISBN:0030229073]
comment: Taxon notes: Most ascidians lack a postabdomen
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0011305
name: superficial part of temporalis
synonym: "temporalis, superficial" EXACT [FEED:FEED]
property_value: UBPROP:0000001 "The superficial temporalis muscle is a separable part of the temporalis muscle that attaches to the temporalis fascia.[FEED]" xsd:string
is_a: UBERON:0003681 ! masticatory muscle
relationship: part_of UBERON:0001598 {source="FEED"} ! temporalis muscle
[Term]
id: UBERON:0011306
name: deep part of temporalis
synonym: "temporalis, deep" EXACT [FEED:FEED]
property_value: UBPROP:0000001 "The deep temporalis muscle is a separable part of the temporalis muscle that that attaches to the bony wall of the braincase and is deep to the superficial temporalis.[FEED]" xsd:string
is_a: UBERON:0003681 ! masticatory muscle
relationship: part_of UBERON:0001598 {source="FEED"} ! temporalis muscle
[Term]
id: UBERON:0011307
name: suprazygomatic part of temporalis
synonym: "temporalis, suprazygomatic" EXACT [FEED:FEED]
property_value: UBPROP:0000001 "The suprazygomatic part of the temporalis muscle is a separable part of the deep temporalis that attaches to the superior surface of the temporal root of the zygomatic arch.[FEED]" xsd:string
is_a: UBERON:0003681 ! masticatory muscle
relationship: part_of UBERON:0001598 {source="FEED"} ! temporalis muscle
[Term]
id: UBERON:0011308
name: pars reflexa of masseter
def: "The pars reflexa is a separable part of the superficial masseter muscle that attaches to the medial surface of the mandible." [FEED:FEED]
synonym: "masseter, pars reflexa" EXACT [FEED:FEED]
synonym: "pars reflexa" BROAD [FEED:FEED]
property_value: UBPROP:0000001 "The pars reflexa is a separable part of the superficial masseter muscle that attaches to the medial surface of the mandible.[FEED]" xsd:string
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0011140 ! superficial part of masseter muscle
[Term]
id: UBERON:0011309
name: body of mandible
def: "The body of the mandible is curved somewhat like a horseshoe and has two surfaces and two borders." [Wikipedia:Body_of_mandible]
synonym: "body of the mandible" RELATED [Wikipedia:Body_of_mandible]
synonym: "mandibular body" EXACT [FMA:52827]
xref: FMA:52827
xref: SCTID:244684002
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001684 {source="FMA"} ! mandible
[Term]
id: UBERON:0011310
name: masseteric fossa
def: ".The fossa for the masseter. In some therapsids, the coronoid process of the dentary bears a large external depression which accommodates the masseter -- an important muscle in closing and in grinding motions of the jaw." [http://palaeos.com/vertebrates/glossary/glossaryM.html]
synonym: "masseteric cavity" RELATED []
property_value: UBPROP:0000001 "fossa on the lateral surface of the mandible, located in the superior part of the ascending process.[FEED]" xsd:string
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0001684 {source="FMA"} ! mandible
[Term]
id: UBERON:0011311
name: hyoepiglottic ligament
def: "an elastic band connecting the anterior surface of the epiglottis to the upper border of the body of the hyoid bone." [Wikipedia:Hyoepiglottic_ligament]
synonym: "hyo-epiglottic ligament" EXACT [FMA:55227]
synonym: "igamentum hyoepiglotticum" EXACT LATIN [Wikipedia:Hyoepiglottic_ligament]
xref: FMA:55227
xref: ncithesaurus:Hyoepiglottic_Ligament
xref: SCTID:279552007
is_a: UBERON:0001730 {source="FMA"} ! extrinsic ligament of larynx
relationship: connects UBERON:0000388 ! epiglottis
relationship: connects UBERON:0003999 ! hyoid bone body
[Term]
id: UBERON:0011312
name: hyoepiglottic muscle
comment: Developed in mammals other than human. TODO: add relationship to hyoepiglottic ligament.
synonym: "hyo-epiglottic muscle" EXACT []
synonym: "hyoepiglotticus" EXACT []
synonym: "hyoepiglottus" EXACT []
is_a: UBERON:0001568 ! muscle of larynx
relationship: attaches_to UBERON:0000388 ! epiglottis
relationship: attaches_to UBERON:0003999 ! hyoid bone body
[Term]
id: UBERON:0011313
name: posterior subdivision of masseter
synonym: "masseter, posterior" EXACT [FEED:FEED]
property_value: UBPROP:0000001 "The posterior masseter is a separable part of the deep masseter muscle that attaches to the postero-ventral surface of the zygomatic arch.[FEED]" xsd:string
is_a: UBERON:0000064 ! organ part
relationship: in_posterior_side_of UBERON:0001597 ! masseter muscle
[Term]
id: UBERON:0011314
name: anterior subdivision of masseter
synonym: "masseter, anterior" EXACT [FEED:FEED]
property_value: UBPROP:0000001 "The anterior masseter is a separable part of the masseter muscle that is attached to anterior root of zygomatic arch.[FEED]" xsd:string
is_a: UBERON:0000064 ! organ part
relationship: in_anterior_side_of UBERON:0001597 ! masseter muscle
[Term]
id: UBERON:0011315
name: digastric branch of facial nerve
def: "The digastric branch of facial nerve arises close to the stylomastoid foramen, and divides into several filaments, which supply the posterior belly of the Digastricus; one of these filaments joins the glossopharyngeal nerve." [Wikipedia:Digastric_branch_of_facial_nerve]
synonym: "digastric branch" BROAD [Wikipedia:Digastric_branch_of_facial_nerve]
synonym: "digastric branch of facial nerve (CN VII)" EXACT [FEED:FEED]
synonym: "facial nerve, digastric branch" EXACT []
synonym: "nerve to posterior belly of digastric" EXACT [FMA:53288]
synonym: "ramus digastricus (nervus facialis)" EXACT [FMA:53288]
synonym: "ramus digastricus nervus facialis" EXACT [FMA:TA]
xref: FMA:53288
xref: SCTID:17743006
is_a: UBERON:0001647 ! facial nerve
is_a: UBERON:0002003 ! peripheral nerve
relationship: branch_of UBERON:0001647 {source="FMA"} ! facial nerve
[Term]
id: UBERON:0011316
name: nerve to stylohyoid from facial nerve
def: "The stylohyoid branch of facial nerve frequently arises in conjunction with the digastric branch; it is long and slender, and enters the Stylohyoideus about its middle." [Wikipedia:Stylohyoid_branch_of_facial_nerve]
synonym: "facial nerve stylohyoid branch" EXACT [FMA:53298]
synonym: "nerve to stylohyoid" EXACT [FMA:53298]
synonym: "ramus stylohyoideus" EXACT [FMA:53298]
synonym: "ramus stylohyoideus nervus facialis" EXACT [FMA:TA]
synonym: "stylodigastric nerve" EXACT [FMA:53298]
synonym: "stylohyoid branch" RELATED [Wikipedia:Stylohyoid_branch_of_facial_nerve]
synonym: "stylohyoid branch of facial nerve" EXACT [FMA:53298]
xref: FMA:53298
xref: SCTID:89590005
is_a: UBERON:0001647 ! facial nerve
is_a: UBERON:0002003 ! peripheral nerve
relationship: branch_of UBERON:0001647 {source="FMA"} ! facial nerve
[Term]
id: UBERON:0011317
name: nerve to stylopharyngeus from glossopharyngeal nerve
synonym: "branch of glossopharyngeal nerve to stylopharyngeus" EXACT [FMA:53487]
synonym: "nerve to stylopharyngeus" EXACT [FMA:53487]
synonym: "ramus musculi stylopharyngei nervus glossopharyngei" EXACT [FMA:TA]
synonym: "stylopharyngeal branch of glossopharyngeal nerve" EXACT [FMA:53487]
xref: FMA:53487
xref: SCTID:280294008
is_a: UBERON:0002003 ! peripheral nerve
relationship: branch_of UBERON:0001649 {source="FMA"} ! glossopharyngeal nerve
[Term]
id: UBERON:0011318
name: capsule of temporomandibular joint
def: "The articular capsule (capsular ligament) is a thin, loose envelope, attached above to the circumference of the mandibular fossa and the articular tubercle immediately in front; below, to the neck of the condyle of the mandible." [Wikipedia:Capsule_of_temporomandibular_joint]
synonym: "articular capsule of temporomandibular joint" EXACT [FMA:57050]
synonym: "capsula articularis articulationis temporomandibularis" EXACT LATIN [Wikipedia:Capsule_of_the_temporomandibular_joint]
xref: FMA:57050
xref: SCTID:303404000
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0001484 ! articular capsule
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0003700
intersection_of: UBERON:0001484 ! articular capsule
intersection_of: part_of UBERON:0003700 ! temporomandibular joint
relationship: part_of UBERON:0003700 ! temporomandibular joint
[Term]
id: UBERON:0011319
name: disk of temporomandibular joint
def: "The fibrocartilaginous plate that separates the joint into upper and lower cavities." [BTO:0003675, Wikipedia:Articular_disk_of_the_temporomandibular_joint]
synonym: "articular disc of temporomandibular joint" EXACT [FMA:57059]
synonym: "articular disc of temporomandibular joint" RELATED [BTO:0003675]
synonym: "articular disk of temporomandibular joint" EXACT [FMA:57059]
synonym: "discus articularis (articulatio temporomandibularis)" EXACT [FMA:57059]
synonym: "discus articularis articulationis temporomandibularis" EXACT LATIN [Wikipedia:Articular_disk_of_the_temporomandibular_joint]
synonym: "discus articularis articulationis temporomandibularis" EXACT [FMA:TA]
synonym: "discus articularis temporomandibularis" RELATED [BTO:0003675]
synonym: "mandibular disk" RELATED [BTO:0003675]
synonym: "temporomandibular articular disk" EXACT [BTO:0003675]
synonym: "temporomandibular articular disk" RELATED [GAID:273]
synonym: "temporomandibular joint disk" RELATED [Wikipedia:Articular_disk_of_the_temporomandibular_joint]
xref: BTO:0003675
xref: FMA:57059
xref: MESH:A.02.835.583.861.900
xref: SCTID:282433007
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0007844 {source="FMA"} ! cartilaginous element
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0003700 {source="BTO"} ! temporomandibular joint
[Term]
id: UBERON:0011320
name: ligament of temporomandibular joint
def: "." [Wikipedia:Temporomandibular_joint#Ligaments]
synonym: "temporomandibular joint ligament" EXACT [FMA:57070]
xref: FMA:57070
xref: SCTID:127861009
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0008846 ! skeletal ligament
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0003700
intersection_of: UBERON:0008846 ! skeletal ligament
intersection_of: part_of UBERON:0003700 ! temporomandibular joint
relationship: part_of UBERON:0003700 ! temporomandibular joint
[Term]
id: UBERON:0011321
name: masseteric nerve
def: "The masseteric nerve passes laterally, above the Pterygoideus externus, in front of the temporomandibular articulation, and behind the tendon of the Temporalis; it crosses the mandibular notch with the masseteric artery, to the deep surface of the Masseter, in which it ramifies nearly as far as its anterior border. It gives a filament to the temporomandibular joint." [Wikipedia:Masseteric_nerve]
synonym: "nervus massetericus" EXACT LATIN [Wikipedia:Masseteric_nerve]
xref: FMA:53103
xref: SCTID:280254006
is_a: UBERON:0002003 ! peripheral nerve
relationship: branch_of UBERON:0000375 {source="FMA"} ! mandibular nerve
[Term]
id: UBERON:0011322
name: mylohyoid nerve
def: "A nerve that innervates the mylohyoid muscle and the anterior belly of the digastric muscle." [Wikipedia:Mylohyoid_nerve]
synonym: "branch of inferior alveolar nerve to mylohyoid" EXACT [FMA:53247]
synonym: "mylodigastric nerve" EXACT [FMA:53247]
synonym: "mylohyoid branch of inferior alveolar nerve" EXACT [FMA:53247]
synonym: "nerve to mylohyoid" EXACT [FMA:53247]
synonym: "nerve to mylohyoid" RELATED [Wikipedia:Mylohyoid_nerve]
synonym: "nervus mylohyoideus" EXACT [FMA:TA]
synonym: "nervus mylohyoideus" EXACT LATIN [Wikipedia:Mylohyoid_nerve]
xref: FMA:53247
xref: SCTID:280269007
is_a: UBERON:0002003 ! peripheral nerve
[Term]
id: UBERON:0011325
name: pharyngeal nerve plexus
def: "The pharyngeal plexus is a network of nerve fibers innervating most of the palate, larynx, and pharynx. It is located on the surface of the middle pharyngeal constrictor muscle." [Wikipedia:Pharyngeal_plexus_of_vagus_nerve]
synonym: "pharyngeal nerve plexus" EXACT [FMA:82453]
synonym: "pharyngeal plexus of vagus nerve" EXACT [Wikipedia:Pharyngeal_plexus_of_vagus_nerve]
synonym: "plexus pharyngeus nervi vagi" EXACT LATIN [Wikipedia:Pharyngeal_plexus_of_vagus_nerve]
synonym: "vagus nerve pharyngeal plexus" EXACT []
xref: FMA:82453
xref: SCTID:369429008
is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus
[Term]
id: UBERON:0011326
name: superior laryngeal nerve
def: "The superior laryngeal nerve is a branch of the vagus nerve. It arises from the middle of the ganglion nodosum and in its course receives a branch from the superior cervical ganglion of the sympathetic. It descends, by the side of the pharynx, behind the internal carotid artery, and divides into two branches: external laryngeal nerve internal laryngeal nerve A superior laryngeal nerve palsy changes the pitch of the voice and causes an inability to make explosive sounds. If no recovery is evident three months after the palsy initially presents, the damage is most likely to be permanent. A bilateral palsy presents as a tiring and hoarse voice." [Wikipedia:Superior_laryngeal_nerve]
synonym: "nervus laryngealis superior" EXACT [FMA:6239]
synonym: "nervus laryngeus superior" EXACT LATIN [Wikipedia:Superior_laryngeal_nerve]
synonym: "superior laryngeal branch of inferior vagal ganglion" EXACT [FMA:6239]
synonym: "superior laryngeal branch of vagus" EXACT [FMA:6239]
xref: FMA:6239
xref: SCTID:279928006
is_a: UBERON:0002003 ! peripheral nerve
relationship: branch_of UBERON:0001759 {source="FMA"} ! vagus nerve
[Term]
id: UBERON:0011327
name: deep temporal nerve
def: "The deep temporal nerves, branches of the mandibular division of the trigeminal nerve, are two in number, anterior and posterior. They pass above the upper border of the pterygoideus externus and enter the deep surface of the temporalis." [Wikipedia:Deep_temporal_nerves]
synonym: "deep temporal nerve" RELATED [Wikipedia:Deep_temporal_nerves]
synonym: "nervi temporales profundi" EXACT PLURAL [FMA:TA]
xref: FMA:53187
xref: SCTID:280255007
is_a: UBERON:0002003 ! peripheral nerve
relationship: branch_of UBERON:0000375 {source="FMA"} ! mandibular nerve
[Term]
id: UBERON:0011332
name: extrinsic tongue pre-muscle mass
xref: EMAPA:17884
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003416 ! mesenchyme of tongue
is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation
relationship: part_of UBERON:0003273 {source="EMAPA"} ! skeletal muscle of tongue
[Term]
id: UBERON:0011342
name: surface of mandible
synonym: "mandibular surface" EXACT [FMA:57558]
xref: FMA:57558
is_a: UBERON:0006984 ! anatomical surface
relationship: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0011343
name: medial surface of mandible
synonym: "medial surface of mandibular ramus" NARROW [FMA:59464]
xref: FMA:59464
is_a: UBERON:0011342 ! surface of mandible
[Term]
id: UBERON:0011344
name: lateral surface of mandible
synonym: "lateral surface of mandibular ramus" BROAD [FMA:59463]
xref: FMA:59463
is_a: UBERON:0011342 ! surface of mandible
[Term]
id: UBERON:0011345
name: pharyngeal raphe
def: "The Pharyngeal raphe is a raphe that serves as the origin and insertion for several of the pharyngeal constrictors." [Wikipedia:Pharyngeal_raphe]
comment: AO notes: isa anatomical line in FMA
synonym: "raphe pharyngis" EXACT [Wikipedia:Pharyngeal_raphe]
xref: FMA:55077
xref: SCTID:179763009
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
disjoint_from: UBERON:0011346 ! palatine raphe
relationship: part_of UBERON:0006562 ! pharynx
[Term]
id: UBERON:0011346
name: palatine raphe
def: "a raphe running across the palate, from the palatine uvula to the incisive papilla." [Wikipedia:Palatine_raphe]
comment: AO notes: isa anatomical line in FMA
synonym: "raphe palati" EXACT [Wikipedia:Palatine_raphe]
xref: FMA:75111
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001716 ! secondary palate
[Term]
id: UBERON:0011347
name: raphe of hard palate
xref: SCTID:368683007
is_a: UBERON:0011346 ! palatine raphe
relationship: part_of UBERON:0003216
intersection_of: UBERON:0011346 ! palatine raphe
intersection_of: part_of UBERON:0003216 ! hard palate
relationship: part_of UBERON:0003216 ! hard palate
[Term]
id: UBERON:0011348
name: raphe of soft palate
xref: SCTID:245785003
is_a: UBERON:0011346 ! palatine raphe
relationship: part_of UBERON:0001733
intersection_of: UBERON:0011346 ! palatine raphe
intersection_of: part_of UBERON:0001733 ! soft palate
relationship: part_of UBERON:0001733 ! soft palate
[Term]
id: UBERON:0011349
name: pterygomandibular raphe
def: "The pterygomandibular raphe (pterygomandibular ligament) is a tendinous band of the buccopharyngeal fascia, attached by one extremity to the hamulus of the medial pterygoid plate, and by the other to the posterior end of the mylohyoid line of the mandible. Its medial surface is covered by the mucous membrane of the mouth. Its lateral surface is separated from the ramus of the mandible by a quantity of adipose tissue. Its posterior border gives attachment to the superior pharyngeal constrictor muscle. Its anterior border attaches to the posterior edge of the buccinator." [Wikipedia:Pterygomandibular_raphe]
comment: AO notes: isa anatomical line in FMA
synonym: "pterygomandibular ligament" RELATED [Wikipedia:Pterygomandibular_raphe]
synonym: "pterygomandibular raph%c3%a9" RELATED [Wikipedia:Pterygomandibular_raphe]
xref: FMA:55618
xref: SCTID:142713007
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0011350
name: mylohyoid raphe
synonym: "raphe of the mylohyoid" RELATED []
is_a: UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0011357
name: Reissner's fiber
def: "An acellular strand that runs from subcommissural organ caudally through the ventricular system and central canal to the ampulla caudalis. Develops from glycoproteins secreted into CSF." [ISBN10:0471888893, Wikipedia:Reissner's_fiber]
comment: Taxon notes: Reissner's fiber is present in the central canal of species in all chordate subphyla[Olsson R. (1993) Reissner's fiber mechanisms: some common denominators. In The Subcommissural Organ: An Ependymal Brain Gland ]
synonym: "Reissner's fibre" EXACT []
property_value: "present_in_taxon" NCBITaxon:7711
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0011358
name: infundibular organ
comment: Resembles the subcommisural organ structurally, ultrastructurally and immunochemically[Niewenhuys] Gives rise to Reissner's fiber; however secretions are not identical to those of SCO [PMID:9550137][doi:10.1007/BF00303086]
synonym: "infundibular organ of Boeke" EXACT []
synonym: "ventral infundibular organ" EXACT []
property_value: "present_in_taxon" NCBITaxon:7737
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0001017 ! central nervous system
relationship: secretes UBERON:0011357 ! Reissner's fiber
[Term]
id: UBERON:0011359
name: urophysis
def: "This is a neurosecretory organ rostral to the ampulla caudalis on the ventral surface of the distal end of the spinal cord. Receives axons from caudal neurosecretory nucleus, which contains Dahlgren cells that secrete urotensin I and II, implicated in osmotic regulation, cardiovascular function and reproduction[Butler]." [ISBN10:0471888893]
comment: Shares characteristics with neurohypophysis
xref: BTO:0001848
property_value: RO:0002161 NCBITaxon:32523
is_a: UBERON:0005174 ! back organ
is_a: UBERON:0010133 ! neuroendocrine gland
relationship: part_of UBERON:0002240 {source="BTO"} ! spinal cord
[Term]
id: UBERON:0011360
name: ampulla caudalis
def: "A ventricle-like space at the end of the central canal" [ISBN10:0471888893]
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002291 {notes="in caudal end of"} ! central canal
[Term]
id: UBERON:0011362
name: cranial blood vasculature
synonym: "set of blood vessels of head" EXACT []
xref: TAO:0005297
xref: ZFA:0005297
property_value: UBPROP:0000001 "Blood vessel part of cranial vasculature.[TAO]" xsd:string
is_a: UBERON:0002200 ! vasculature of head
is_a: UBERON:0004537 ! blood vasculature
relationship: part_of UBERON:0000033
intersection_of: UBERON:0004537 ! blood vasculature
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0011363
name: cranial lymph vasculature
synonym: "set of lymphatic vessels of head" EXACT [FMA:224562]
xref: FMA:224562
xref: TAO:0005298
xref: ZFA:0005298
is_a: UBERON:0002200 ! vasculature of head
is_a: UBERON:0004536 ! lymph vasculature
relationship: part_of UBERON:0000033
intersection_of: UBERON:0004536 ! lymph vasculature
intersection_of: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0011364
name: cleidocephalicus muscle
def: "The cleidomastoideus is a thick, strap-like muscle that together with the cleidocervicalis forms the proximal part of the brachiocephalicus. It lies beneath the cleidocervicalis. Its origin is the clavicular tendon with its insertion being at the mastoid process of the temporal bone. It is distinctly narrow and is united with the cleidocervicalis and cleidobrachialis by the clavicular tendon. Together with the other two components of the brachiocephalicus muscle, its primary function is to advance the free limb, however, it can also act as an shoulder extensor. Acting bilaterally, it fixes and depresses the neck, while by its unilateral action, it allows the head and neck to be drawn to the side. Its blood supply is the inferior cervical, carotid and vertebral arteries and its nerve supply is the spinal accessory, cervical and axillary nerves." [MURDOCH:379]
comment: alt def: "Combination of cleidomastoid and cleidocervical muscles"
synonym: "cleidocephalic" EXACT [MA:0002275]
synonym: "cleidocephalic muscle" EXACT []
synonym: "cleidocephalicus" EXACT []
synonym: "cleidomastoid" RELATED []
synonym: "cleidomastoid muscle" RELATED []
synonym: "cleidomastoideus" RELATED []
synonym: "pars mastoideus" RELATED []
xref: MA:0002275
xref: ncithesaurus:Cleidocephalic
is_a: UBERON:0001630 ! muscle organ
relationship: attaches_to UBERON:0001105
relationship: attaches_to UBERON:0011220
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: attaches_to UBERON:0001105 ! clavicle
intersection_of: attaches_to UBERON:0011220 ! mastoid process of temporal bone
relationship: attaches_to UBERON:0001105 ! clavicle
relationship: attaches_to UBERON:0011220 ! mastoid process of temporal bone
relationship: has_muscle_insertion UBERON:0011220 ! mastoid process of temporal bone
relationship: has_muscle_origin UBERON:0001105 ! clavicle
relationship: part_of UBERON:0011368 ! brachiocephalic muscle
[Term]
id: UBERON:0011366
name: cleidobrachialis muscle
def: "This muscle makes up the distal segment of the brachiocephalicus. It originates at the clavicular tendon but functionally, from the head and neck through the cleidocervicalis. It inserts at the distal end of the cranial border of the humerus, where it lies between the biceps brachii medially and the brachialis laterally. The muscle partly covers the pectoral muscles at their insertions. In conjunction with the cleidocervicalis, it advances the limb, extends the shoulder and causes lateral movement of the head and neck." [MURDOCH:376]
synonym: "cleidobrachial muscle" EXACT []
synonym: "cleidobrachialis" EXACT []
xref: MA:0002274
xref: ncithesaurus:Cleidobrachial
is_a: UBERON:0001630 ! muscle organ
relationship: attaches_to UBERON:0000976
relationship: attaches_to UBERON:0001105
relationship: part_of UBERON:0011364
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: attaches_to UBERON:0000976 ! humerus
intersection_of: attaches_to UBERON:0001105 ! clavicle
intersection_of: part_of UBERON:0011364 ! cleidocephalicus muscle
relationship: attaches_to UBERON:0000976 ! humerus
relationship: attaches_to UBERON:0001105 ! clavicle
relationship: has_muscle_insertion UBERON:0000976 ! humerus
relationship: has_muscle_origin UBERON:0001105 ! clavicle
relationship: part_of UBERON:0011364 ! cleidocephalicus muscle
[Term]
id: UBERON:0011368
name: brachiocephalic muscle
def: "The brachiocephalicus is a long and flat, complex of muscles that extends from the lower half of the humeral shaft to the head and neck. The muscle divides into two parts at the clavicular intersection. This is also the point of origin for all the muscles that make up the brachiocephalicus. This point is situated just cranial to the shoulder. The two main sections are the cleidobrachialis which is distal to the clavicular intersection and the cleidocephalicus which extends proximally to the clavivular intersection. The cleidocephalicus can also be divided into the pars cervicalis, which inserts on the broad aponeurosis, over the fibrous raphe of the cranial half of the neck. The other part, the pars mastoideus inserts on the mastoid process of the temporal bone via a strong tendon. The cleidobrachialis extends distally from the clavicular intersection and inserts on the cranial edge of the distal half of the humerus. The tendon that inserts the cleidobrachialis lies between the brachialis muscle and the biceps brachii. As a result of the brachiocephalicus spanning a large region it has the ability to provide a number of actions. These include extending the shoulder joint, protracts the limb, provides lateral movement of the head and allows the neck to be depressed." [http://ccg.murdoch.edu.au/museum/]
comment: The brachiocephalicus is more complex than other muscles of the forelimb. It consists of 2 elements that unite at the clavicle in dogs. In dogs the caudal part, known as the cleidobrachialis, runs from the clavicle to the humerus and is closely associated with the deltoid. The cranial portion runs from the clavicle to various attachments via a broad aponeurosis on the upper part of the head and neck. It is called the cleidomastoideus in the dog because it inserts on the mastoid process of the temporal bone. It may have a different name, like cleido-occipitalis, in other mammals. The name brachiocephalicus signifies that this complex of muscles runs from the upper arm to the head and does not specify the details of muscle attachments because these vary so much from species to species. The brachiocephalicus advances the limb and may also extend the shoulder joint, but this depends on the cranial attachment being fixed and the limb being free to move. However, when the forelimb is firmly on the ground and the head is free to move, it forces the head and neck either ventrally or to one side depending on whether or not both muscles act in tandem
synonym: "brachiocephalicus" BROAD []
is_a: UBERON:0001630 ! muscle organ
relationship: attaches_to UBERON:0000976
relationship: attaches_to UBERON:0011220
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: attaches_to UBERON:0000976 ! humerus
intersection_of: attaches_to UBERON:0011220 ! mastoid process of temporal bone
relationship: attaches_to UBERON:0000976 ! humerus
relationship: attaches_to UBERON:0011220 ! mastoid process of temporal bone
[Term]
id: UBERON:0011369
name: omotransversarius muscle
def: "The omotransversarius is a straplike muscle, which advances and adducts the forelimb, as well as flexes the neck laterally. It covers the transverse processes of the cervical vertebrae, lying to their side. The omotransversarius lies ventral to the trapezius, cranial to the deltoid muscle and is covered cranially by the cleidocervicalis. It extends from the atlas to the spine of the scapula, with its origin on the transverse process of the atlas and its insertion in the distal end of the spine of the scapula. Its name can be split into omo, which is Greek for shoulder, and tranversarius which relates to its attachment to the transverse process of the atlas. This muscle is innervated by the accessory nerve." [MURDOCH:1433]
synonym: "omotransverse" EXACT [MA:0002349]
synonym: "omotransverse muscle" EXACT []
xref: MA:0002349
xref: ncithesaurus:Omotransverse
is_a: UBERON:0001630 ! muscle organ
relationship: attaches_to UBERON:0004651
relationship: attaches_to UBERON:0011370
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: attaches_to UBERON:0004651 ! scapula spine
intersection_of: attaches_to UBERON:0011370 ! transverse process of atlas
relationship: attaches_to UBERON:0004651 ! scapula spine
relationship: attaches_to UBERON:0011370 ! transverse process of atlas
[Term]
id: UBERON:0011370
name: transverse process of atlas
xref: FMA:23981
xref: SCTID:181895009
is_a: UBERON:0001077 ! transverse process of vertebra
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0001092
intersection_of: UBERON:0001077 ! transverse process of vertebra
intersection_of: part_of UBERON:0001092 ! first cervical vertebra
relationship: part_of UBERON:0001092 ! first cervical vertebra
[Term]
id: UBERON:0011371
name: sternocephalicus muscle
def: "The sternocephalicus is a flat muscle and its caudal border is adjacent to the ventral border of the brachiocephalicus. The lateral aspect of this muscle is crossed obliquely by the external jugular vein. It originates as a unit on the first sternebrae. The cranial portion of the muscle divides into two separate sections with different insertion points. These are the sternomastoideus and the sterno-occipitalis. The ventral portion, the sternomastiodeus is the stronger and main continuation of the sternocephalicus, which inserts on the mastoid part of the temporal bone. The thin but wide dorsal segment, the sterno-occipitalis attaches to the dorsal nuchal crest by a thin aponeurosis. The main action provided by the sternocephalicus is movement of the head and neck to the side. Ventral branches of the cervical nerves are attached to this muscle." [MURDOCH:1749]
synonym: "sternocephalicus" EXACT []
xref: SCTID:21636001
is_a: UBERON:0001630 ! muscle organ
relationship: has_muscle_insertion UBERON:0001676
relationship: has_muscle_insertion UBERON:0011220
relationship: has_muscle_origin UBERON:0002208
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: has_muscle_insertion UBERON:0001676 ! occipital bone
intersection_of: has_muscle_insertion UBERON:0011220 ! mastoid process of temporal bone
intersection_of: has_muscle_origin UBERON:0002208 ! sternebra
relationship: has_muscle_insertion UBERON:0001676 ! occipital bone
relationship: has_muscle_insertion UBERON:0001676 {notes="nuchal crest"} ! occipital bone
relationship: has_muscle_insertion UBERON:0011220 ! mastoid process of temporal bone
relationship: has_muscle_origin UBERON:0002208 ! sternebra
[Term]
id: UBERON:0011374
name: prepuce
comment: Usage notes: this is a generic sex-neutral grouping class for the male and female prepuce. Note that this structure is a combination of skin and other tissue
xref: ncithesaurus:Prepuce
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0005156 ! reproductive structure
relationship: has_part UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0005156 ! reproductive structure
[Term]
id: UBERON:0011375
name: skin of prepuce of clitoris
synonym: "preputial skin of clitoris" EXACT [FMA:27886]
xref: FMA:27886
xref: SCTID:367670008
is_a: UBERON:0005298 ! skin of clitoris
relationship: part_of UBERON:0005299
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0005299 ! prepuce of clitoris
relationship: part_of UBERON:0005298 ! skin of clitoris
relationship: part_of UBERON:0005299 ! prepuce of clitoris
[Term]
id: UBERON:0011376
name: iliothoracic muscle
def: "The iliothoracic group is made up of the abdominal wall muscles: rectus abdominis, external abdominal oblique, internal abdominal obliquus, and the transversus abdominis" [http://emedicine.medscape.com/article/1899031-overview]
synonym: "iliothoracic" EXACT [MA:0002322]
xref: MA:0002322
xref: ncithesaurus:Iliothoracic
is_a: UBERON:0008242 ! lower back muscle
relationship: part_of UBERON:0005462 ! lower back
[Term]
id: UBERON:0011377
name: femorothoracic muscle
def: "The femorospinal group is made up of the psoas major and iliacus muscles" [http://emedicine.medscape.com/article/1899031-overview]
synonym: "femorothoracic" EXACT [MA:0002322]
is_a: UBERON:0008242 ! lower back muscle
relationship: part_of UBERON:0005462 ! lower back
[Term]
id: UBERON:0011379
name: male external urethral sphincter
def: "The external sphincter muscle of urethra (or sphincter urethrae membranaceae) surrounds the whole length of the membranous portion of the urethra, and is enclosed in the fasciæ of the urogenital diaphragm. They arch across the front of the urethra and bulbourethral glands, pass around the urethra, and behind it unite with the muscle of the opposite side, by means of a tendinous raphé." [Wikipedia:External_sphincter_muscle_of_male_urethra]
comment: AO notes: MA includes a term bulboglandular - some sources claim this as the muscles that are associated with the bulbourethral gland, so we place this here
synonym: "bulboglandular" RELATED [MA:0002273]
synonym: "bulboglandular muscle" RELATED []
synonym: "external urethral sphincter of male urethra" EXACT [FMA:19733]
synonym: "male sphincter urethrae" EXACT [FMA:19733]
synonym: "male sphincter urethrae muscle" EXACT [FMA:19733]
synonym: "male urethral sphincter muscle" EXACT [FMA:19733]
synonym: "musculus sphincter urethrae externus urethrae masculinae" EXACT LATIN [Wikipedia:External_sphincter_muscle_of_male_urethra]
synonym: "musculus sphincter urethrae membranaceae" EXACT LATIN [Wikipedia:External_sphincter_muscle_of_male_urethra]
xref: FMA:19733
xref: MA:0002273
xref: ncithesaurus:Bulboglandular
is_a: UBERON:0004919 ! external urethral sphincter
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000079
intersection_of: UBERON:0004919 ! external urethral sphincter
intersection_of: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0011380
name: female external urethral sphincter
def: "The external sphincter muscle of female urethra is a muscle which controls urination." [Wikipedia:External_sphincter_muscle_of_female_urethra]
synonym: "compressor urethrae" RELATED INCONSISTENT [Wikipedia:External_sphincter_muscle_of_female_urethra]
synonym: "external urethral sphincter of female urethra" EXACT []
synonym: "musculus sphincter urethrae externus urethrae femininae" EXACT LATIN [Wikipedia:External_sphincter_muscle_of_female_urethra]
synonym: "outer muscle layer of female urethra" EXACT [FMA:19778]
synonym: "rhabdosphincter of female urethra" EXACT [FMA:19778]
synonym: "sphincter urethrovaginalis" RELATED DEPRECATED [Wikipedia:External_sphincter_muscle_of_female_urethra]
synonym: "striated muscle layer of female urethra" EXACT [FMA:19778]
synonym: "urethrovaginal sphincter" RELATED DEPRECATED [Wikipedia:External_sphincter_muscle_of_female_urethra]
xref: FMA:19778
is_a: UBERON:0004919 ! external urethral sphincter
is_a: UBERON:0005156 ! reproductive structure
relationship: part_of UBERON:0000474
intersection_of: UBERON:0004919 ! external urethral sphincter
intersection_of: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0011383
name: inferior pancreaticoduodenal vein
synonym: "inferior pancreatico-duodenal vein" EXACT [MA:0002191]
xref: MA:0002191
xref: ncithesaurus:Inferior_Pancreatico-Duodenal_Vein
is_a: UBERON:0004690 ! pancreaticoduodenal vein
[Term]
id: UBERON:0011384
name: superior pancreaticoduodenal vein
synonym: "superior pancreatico-duodenal vein" EXACT [MA:0002192]
synonym: "vena pancreaticoduodenalis superior" EXACT []
xref: MA:0002192
is_a: UBERON:0004690 ! pancreaticoduodenal vein
[Term]
id: UBERON:0011385
name: parotidoauricular muscle
def: "Is one of the numerus muscles of the external ear and is of importance since it is encountered in the operation for drainage of infections of the external ear of the dog. As its name suggests, it arises from the fascia over the parotid gland and approaches the auricle from the ventrolateral direction. This muscle is supplied by the facial nerve.The muscles of the external ear with their scattered origins and precisely located insertions provide for displacement and rotation of the ear in all directions. These muscles also have a collective function in communication both within and between species." [MURDOCH:1519]
synonym: "parotidoauricular" EXACT [MA:0002352]
synonym: "parotidoauricularis" EXACT []
xref: MA:0002352
xref: ncithesaurus:Parotidoauricular
is_a: UBERON:0001583 ! extrinsic auricular muscle
relationship: has_muscle_insertion UBERON:0001757 ! pinna
relationship: has_muscle_origin UBERON:0001831 ! parotid gland
[Term]
id: UBERON:0011386
name: facial modiolus
def: "In facial anatomy, the modiolus is a chiasma of facial muscles held together by fibrous tissue, located lateral and slightly superior to each angle of the mouth. It is important in moving the mouth, facial expression and in dentistry. It derives its motor nerve supply from the facial nerve, and its blood supply from labial branches of the facial artery. It is contributed to by the following muscles: orbicularis oris, buccinator, levator anguli oris, depressor anguli oris, zygomaticus major, risorius quadratus labii superioris, quadratus labii inferioris." [Wikipedia:Modiolus_%28face%29]
xref: FMA:46837
is_a: UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0001567 {source="FMA"} ! cheek
[Term]
id: UBERON:0011387
name: constrictor vulvae muscle
synonym: "constrictor vulvae" EXACT [MA:0002281]
synonym: "sphincter vaginae" RELATED [Wikipedia:Bulbospongiosus_muscle]
xref: MA:0002281
xref: ncithesaurus:Constrictor_Vulvae
xref: SCTID:244961006
property_value: UBPROP:0000001 "The constrictor muscle of the labia is weakly developed in the female dog which blends dorsally with the external anal sphincter muscle and attaches to the coccygeal fascia at the level of the first and second coccygeal vertebrae. It encircles the vulva and vestibule for a distance of about 1 cm. caudal to the area where the urethra enters the vestibule. Its action is to lift the labia dorsally to facilitate intromission of the penis into the vagina. The constrictor vestibuli and vulvae are homologous to the bulbospogiosus (bulbocavernosus) muscle in the male." xsd:string
is_a: UBERON:0011389 {notes="unvetted"} ! bulbospongiosus muscle
[Term]
id: UBERON:0011388
name: male bulbospongiosus muscle
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Bulbospongiosus-Male.png/250px-Bulbospongiosus-Male.png
property_value: "sexually_homologous_to" UBERON:0011387
is_a: UBERON:0011389 ! bulbospongiosus muscle
relationship: continuous_with UBERON:0011379 ! male external urethral sphincter
[Term]
id: UBERON:0011389
name: bulbospongiosus muscle
def: "The bulbospongiosus is the thick extrapelvic continuation of the urethralis. It originates from the perineal body (and midline raphe over corpus spongiosum in male) and inserts at the superficial perineal membrane and dorsal penile or clitoral aponeurosis. In males, the bulbospongiosus muscles are united and surround the base of the penis. They aid in emptying of urine and ejaculate from urethra. In females, these muscles are separated in the middle by the vagina and act to constrict the vaginal introitus. They can also stop the flow of blood into veins, which maintains an erection in the penis of the male and the clitoris of the female. Its nerve connection is the perineal branch of the pudendal nerve (S2, 3, 4)." [MURDOCH:245, Wikipedia:Bulbospongiosus_muscle]
synonym: "bulbocavernosus" RELATED [Wikipedia:Bulbospongiosus_muscle]
synonym: "bulbocavernosus muscle" RELATED [Wikipedia:Bulbospongiosus_muscle]
synonym: "bulbocavernous" RELATED [Wikipedia:Bulbospongiosus_muscle]
synonym: "bulbospongiosus" EXACT [FMA:19729]
synonym: "bulbospongiosus" RELATED [Wikipedia:Bulbospongiosus_muscle]
synonym: "musculus bulbospongiosus" EXACT LATIN [Wikipedia:Bulbospongiosus_muscle]
xref: FMA:19729
xref: SCTID:244972001
is_a: UBERON:0002379 ! perineal muscle
relationship: continuous_with UBERON:0001367 ! external anal sphincter
relationship: has_muscle_nerve UBERON:0011391 ! perineal nerve
relationship: part_of UBERON:0002356 ! perineum
[Term]
id: UBERON:0011390
name: pudendal nerve
def: "The pudendal nerve is a somatic nerve in the pelvic region that innervates the external genitalia of both sexes, as well as sphincters for the bladder and the rectum. It originates in Onuf's nucleus in the sacral region of the spinal cord." [Wikipedia:Pudendal_nerve]
synonym: "internal pudendal nerve" RELATED [Wikipedia:Pudendal_nerve]
synonym: "pudenal nerve" RELATED [Wikipedia:Pudendal_nerve]
synonym: "pudendal" RELATED [Wikipedia:Pudendal_nerve]
xref: FMA:19037
xref: SCTID:181057000
is_a: UBERON:0002003 {source="FMA"} ! peripheral nerve
[Term]
id: UBERON:0011391
name: perineal nerve
def: "a nerve arising from the pudendal nerve that supplies the perineum." [Wikipedia:Perineal_nerve]
synonym: "perineal branch of pudendal nerve" EXACT [FMA:21866]
xref: FMA:21866
xref: SCTID:303236009
is_a: UBERON:0002003 {source="FMA"} ! peripheral nerve
relationship: branch_of UBERON:0011390 ! pudendal nerve
[Term]
id: UBERON:0011392
name: internal elastic membrane
def: "a layer of elastic tissue that forms the outermost part of the tunica intima of blood vessels." [Wikipedia:Internal_elastic_lamina]
synonym: "inner elastic lamina" EXACT [FMA:68205]
synonym: "internal elastic lamina" EXACT [FMA:68205]
xref: FMA:68205
xref: MA:0002863
xref: ncithesaurus:Internal_Elastic_Membrane
xref: SCTID:86405007
is_a: UBERON:0000476 {source="FMA"} ! acellular anatomical structure
is_a: UBERON:0003614 {source="MA"} ! blood vessel elastic tissue
relationship: adjacent_to UBERON:0002522 ! tunica media
relationship: part_of UBERON:0002523 {source="MA"} ! tunica intima
[Term]
id: UBERON:0011415
name: cutaneous trunci muscle
def: "Lying just below the skin, cutaneus trunci is one of very few cutaneus muscles. It composes of a thin sheets of muscle that spred over the body in the superficial fasciae. Their role is to twich the skin to rid of pests etc. Cuteneus muscles are found in all domestic species." [MURDOCH:2210]
comment: covers the entire body with a thin layer of muscle under the deepest layer of the skin. When an area of neuronal subluxation is stimulated with the activator, the cutaneous trunci muscle contracts and causes an involuntary reflexive spasm or "twitch" of the skin
synonym: "cutaneous trunci" EXACT [MA:0002285]
xref: MA:0002285
is_a: UBERON:0006821 ! cutaneous muscle
[Term]
id: UBERON:0011464
name: levator nasolabialis muscle
def: "Is a principal muscle of the lips which arises over the dorsum of the nose. It runs cranioventrally to insert partly on the wing of the nostril and partly into the lateral part of the upper lip. This muscles function includes dilation of the nostril, elevation and retraction of the upper lip. Branches of the facial nerve supply innervation to this muscle." [MURDOCH:1180]
synonym: "levator nasolabialis" EXACT [MA:0002334]
xref: MA:0002334
xref: ncithesaurus:Levator_Nasolabialis
is_a: UBERON:0006821 ! cutaneous muscle
[Term]
id: UBERON:0011465
name: longissimus atlantis muscle
def: "A muscle that runs beneath the longissimus capitis and inserts on the wing of the atlas " [http://de.wikipedia.org/wiki/Musculus_longissimus]
comment: present in horses and dogs
synonym: "longissimus atlantis" EXACT [MA:0002335]
xref: MA:0002335
is_a: UBERON:0000392 ! longissimus muscle
relationship: attaches_to UBERON:0001092 ! first cervical vertebra
[Term]
id: UBERON:0011472
name: ventral lateral sacrocaudal muscle
def: "The ventral lateral sacrocaudal is a long strong muscle consisting of numerous individual parts. Its first segment originates from the last lumbar vertebrae and the remainder from the transverse processes of the caudal vertebrae. From the segmented bellies arise long tendons which are embedded in caudal fascia. The first of these tendons inserts onto the sixth caudal vertebrae, the second onto the seventh and so on until the last caudal vertebrae. The ventral lateral sacrocaudal acts to flex the tail and occasionally assists with lateral movement." [MURDOCH:2183]
synonym: "lumbosacrocaudalis" EXACT [MA:0002342]
synonym: "lumbosacrocaudalis muscle" EXACT [MA:0002342]
synonym: "ventral lateral sacrocaudal" EXACT [MURDOCH:2183]
xref: MA:0002342
xref: MURDOCH:2183
is_a: UBERON:0004518 ! muscle of vertebral column
relationship: attaches_to UBERON:0001095 ! caudal vertebra
relationship: attaches_to UBERON:0002414 ! lumbar vertebra
relationship: overlaps UBERON:0002415 ! tail
[Term]
id: UBERON:0011495
name: rectus thoracis muscle
def: "Rectus thoracis is a very small quadrilateral muscle sheet from the lateral thorax runs from the 3rd-1st rib that is in continuation with rectus abdominis. Its functioning muscle in respiration." [MURDOCH:2224]
synonym: "rectus thoracis" EXACT [MA:0002366]
xref: MA:0002366
is_a: UBERON:0003830 ! thoracic segment muscle
relationship: attaches_to UBERON:0002228 ! rib
relationship: continuous_with UBERON:0002382 ! rectus abdominis muscle
relationship: part_of UBERON:0000915 ! thoracic segment of trunk
[Term]
id: UBERON:0011508
name: sphincter colli superficialis muscle
def: "The sphincter colli superficialis is composed of transverse muscle fibers, and covers the entire area between the lower jaw and chest. The muscle is used to tighten the skin on the underside of the throat." [http://de.wikipedia.org/wiki/Platysma]
synonym: "sphincter colli superficialis" EXACT [MA:0002380]
xref: MA:0002380
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0011509
name: sphincter colli profundus muscle
def: "The sphincter colli profundus of lie below the platysma in the area of the parotid gland (gland regions)." [http://de.wikipedia.org/wiki/Platysma]
comment: The muscles of the mid and upper face derive from the embryonic sphincter colli profundus muscle
synonym: "sphincter colli profundus" EXACT []
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0011510
name: cloacal bursa
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
relationship: part_of UBERON:0000162 ! cloaca
[Term]
id: UBERON:0011511
name: iliococcygeus muscle
def: "The Iliococcygeus arises from the ischial spine and from the posterior part of the tendinous arch of the obturator fascia, and is attached to the coccyx and anococcygeal raphC); it is usually thin, and may fail entirely, or be largely replaced by fibrous tissue. It is part of the levator ani group of muscles. An accessory slip at its posterior part is sometimes named the Iliosacralis." [Wikipedia:Iliococcygeus_muscle]
synonym: "iliococcygeal" RELATED [Wikipedia:Iliococcygeus_muscle]
synonym: "iliococcygei" RELATED [Wikipedia:Iliococcygeus_muscle]
synonym: "iliococcygeus" EXACT [FMA:19092]
synonym: "iliococcygeus" RELATED [Wikipedia:Iliococcygeus_muscle]
synonym: "levator ani - iliococcygeus" RELATED [Wikipedia:Iliococcygeus_muscle]
synonym: "levator ani-iliococcygeus" RELATED [Wikipedia:Iliococcygeus_muscle]
synonym: "musculus iliococcygeus" EXACT LATIN [Wikipedia:Iliococcygeus_muscle]
xref: FMA:19092
xref: SCTID:244964003
is_a: UBERON:0001325 ! muscle of pelvis
relationship: has_muscle_insertion UBERON:0001350 ! coccyx
relationship: has_muscle_origin UBERON:0009000 ! ischial spine
relationship: part_of UBERON:0001326 {source="FMA"} ! levator ani muscle
[Term]
id: UBERON:0011512
name: puborectalis muscle
def: "The fibers which form a sling for the rectum are named the Puborectalis or Sphincter recti. They arise from the lower part of the symphysis pubis, and from the superior fascia of the urogenital diaphragm. They meet with the corresponding fibers of the opposite side around the lower part of the rectum, and form for it a strong sling. Relaxation reduces the angle between rectum and anus, allowing defecation in conjunction with relaxation of the internal and external sphincters. Puborectalis is part of the levator ani group of muscles." [Wikipedia:Puborectalis_muscle]
synonym: "puborectalis" EXACT [FMA:19091]
synonym: "puborectalis" RELATED [Wikipedia:Puborectalis_muscle]
synonym: "sphincter recti" RELATED [Wikipedia:Puborectalis_muscle]
xref: FMA:19091
xref: SCTID:244962004
is_a: UBERON:0001325 ! muscle of pelvis
relationship: has_muscle_origin UBERON:0003699 ! pubic symphysis
relationship: part_of UBERON:0001326 {source="FMA"} ! levator ani muscle
[Term]
id: UBERON:0011528
name: pubococcygeus muscle
def: "The pubococcygeus muscle or PC muscle is a hammock-like muscle, found in both sexes, that stretches from the pubic bone to the coccyx (tail bone) forming the floor of the pelvic cavity and supporting the pelvic organs. It is part of the levator ani group of muscles." [Wikipedia:Pubococcygeus_muscle]
synonym: "%22pc%22 muscle" RELATED [Wikipedia:Pubococcygeus_muscle]
synonym: "coccygeus muscle" RELATED [Wikipedia:Pubococcygeus_muscle]
synonym: "kegel muscle" RELATED [Wikipedia:Pubococcygeus_muscle]
synonym: "levator ani-pubococcygeus" RELATED [Wikipedia:Pubococcygeus_muscle]
synonym: "levator ani-puborectalis" RELATED [Wikipedia:Pubococcygeus_muscle]
synonym: "levator prostatae" EXACT [FMA:19090]
synonym: "musculus pubococcygeus" EXACT LATIN [Wikipedia:Pubococcygeus_muscle]
synonym: "musculus pubovaginalis" EXACT [FMA:TA]
synonym: "pc muscle" RELATED [Wikipedia:Pubococcygeus_muscle]
synonym: "pubococcygeal" RELATED [Wikipedia:Pubococcygeus_muscle]
synonym: "pubococcygeal muscles" RELATED [Wikipedia:Pubococcygeus_muscle]
synonym: "pubococcygeus" RELATED [Wikipedia:Pubococcygeus_muscle]
xref: FMA:19090
xref: SCTID:244958005
is_a: UBERON:0001325 ! muscle of pelvis
relationship: has_muscle_insertion UBERON:0001350 ! coccyx
relationship: has_muscle_insertion UBERON:0003690 ! sacrum
relationship: has_muscle_origin UBERON:0001275 ! pubis
relationship: part_of UBERON:0001326 {source="FMA"} ! levator ani muscle
[Term]
id: UBERON:0011531
name: male pubococcygeus muscle
synonym: "levator prostate" EXACT []
synonym: "levator prostate muscle" EXACT []
synonym: "musculus levator prostatae" EXACT LATIN []
xref: SCTID:71507008
is_a: UBERON:0011528 ! pubococcygeus muscle
relationship: part_of UBERON:0003101
intersection_of: UBERON:0011528 ! pubococcygeus muscle
intersection_of: part_of UBERON:0003101 ! male organism
relationship: part_of UBERON:0003101 ! male organism
[Term]
id: UBERON:0011532
name: female pubococcygeus muscle
def: "Pubovaginalis in the female is the equivalent of levator prostatae in the male." []
synonym: "pubovaginalis" EXACT [FMA:19090]
synonym: "pubovaginalis muscle" EXACT []
xref: SCTID:208282000
is_a: UBERON:0011528 ! pubococcygeus muscle
relationship: part_of UBERON:0003100
intersection_of: UBERON:0011528 ! pubococcygeus muscle
intersection_of: part_of UBERON:0003100 ! female organism
relationship: part_of UBERON:0003100 ! female organism
[Term]
id: UBERON:0011533
name: abductor pollicis, radioulna-prepollox
def: "Originates on the distal radioulna and inserts on the palmar prepollex." [AAO:0010805]
synonym: "m. abductor pollicis" RELATED [AAO:0010805]
xref: AAO:0010805
is_a: UBERON:0003662 ! forelimb muscle
relationship: has_muscle_insertion UBERON:0005880 ! prepollex
relationship: has_muscle_origin UBERON:0006715 ! radio-ulna
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0011534
name: abductor pollicis muscle
xref: SCTID:368422008
is_a: UBERON:0003662 ! forelimb muscle
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0011535
name: chondroglossus muscle
def: "The Chondroglossus is sometimes described as a part of the Hyoglossus, but is separated from it by fibers of the Genioglossus, which pass to the side of the pharynx. It is about 2 cm. long, and arises from the medial side and base of the lesser cornu and contiguous portion of the body of the hyoid bone, and passes directly upward to blend with the intrinsic muscular fibers of the tongue, between the Hyoglossus and Genioglossus." [Wikipedia:Chondroglossus]
synonym: "chondroglossal" EXACT [FMA:46700]
synonym: "chondroglossal muscle" RELATED [Wikipedia:Chondroglossus]
synonym: "chondroglossus" EXACT [FMA:46700]
xref: FMA:46700
xref: SCTID:244787000
is_a: UBERON:0000078 ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0002385 ! muscle tissue
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001572 {source="FMA"} ! hyoglossus muscle
[Term]
id: UBERON:0011564
name: adductor pollicis muscle of prepollex
def: "Originates from the distal carpal 5-4-3 and inserts on the palmar prepollex." [AAO:0010811]
synonym: "m. adductor pollicis" RELATED [AAO:0010811]
xref: AAO:0010811
is_a: UBERON:0011145 ! adductor muscle
relationship: has_muscle_insertion UBERON:0005880 ! prepollex
[Term]
id: UBERON:0011565
name: lumen of gastrointestinal system
synonym: "cavity of digestive tract" EXACT []
synonym: "cavity of gastrointestinal tract" EXACT []
synonym: "gastrointestinal tract lumen" EXACT [FMA:54364]
synonym: "lumen of gastrointestinal tract" EXACT [FMA:54364]
xref: FMA:54364
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0011566
name: lumen of esophagus
synonym: "cavity of esophagus" EXACT [FMA:9398]
synonym: "esophageal cavity" EXACT [FMA:9398]
synonym: "esophageal lumen" EXACT [FMA:9398]
synonym: "esophagus lumen" EXACT [FMA:9398]
xref: FMA:9398
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001043
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0011565 {source="FMA"} ! lumen of gastrointestinal system
[Term]
id: UBERON:0011574
name: mesonephric duct lumen
synonym: "cavity of nephric duct" RELATED []
synonym: "nephric duct lumen" EXACT [EHDAA2:0001244]
xref: EHDAA2:0001244
is_a: UBERON:0005082 ! tube lumen
relationship: part_of UBERON:0003074
intersection_of: UBERON:0005082 ! tube lumen
intersection_of: part_of UBERON:0003074 ! mesonephric duct
relationship: part_of UBERON:0003074 ! mesonephric duct
[Term]
id: UBERON:0011575
name: styloid process of ulna
def: "The styloid process of the ulna projects from the medial and back part of the bone; it descends a little lower than the head, and its rounded end affords attachment to the ulnar collateral ligament of the wrist[WP,unvetted]." [Wikipedia:Ulnar_styloid_process]
synonym: "processus styloideus ulnae" EXACT LATIN [Wikipedia:Ulnar_styloid_process]
synonym: "processus styloideus ulnae" EXACT [FMA:TA]
synonym: "ulnar styloid process" EXACT [FMA:23628]
xref: FMA:23628
xref: SCTID:181952009
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004529 {source="FMA"} ! anatomical projection
relationship: part_of UBERON:0004408 {source="FMA"} ! distal epiphysis of ulna
[Term]
id: UBERON:0011576
name: supra-orbital region of bone
comment: see also: xref: AAO:0000590
xref: FMA:53097
xref: FMA:57137
xref: ncithesaurus:Orbital_Ridge
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0008001 ! irregular bone
relationship: part_of UBERON:0001697 ! orbital region
relationship: part_of UBERON:0003113 ! dermatocranium
[Term]
id: UBERON:0011577
name: flexural organ
comment: Taxon notes: may be an ontogenetical remnant of the infundibular organ in cephalochordates
synonym: "rostral floor plate" RELATED []
xref: ZFA:0007071
property_value: "present_in_taxon" NCBITaxon:7711
is_a: UBERON:0010134 {notes="unvetted"} ! secretory circumventricular organ
[Term]
id: UBERON:0011579
name: venom gland
def: "A gland that secretes venom" [UBERON:cjm]
is_a: UBERON:0002365 ! exocrine gland
relationship: secretes UBERON:0007113
intersection_of: UBERON:0002365 ! exocrine gland
intersection_of: secretes UBERON:0007113 ! venom
relationship: secretes UBERON:0007113 ! venom
[Term]
id: UBERON:0011580
name: platypus crural gland
def: "A kidney-shaped alveolar glands located in the upper thigh connected by a thin-walled duct to a calcaneus spur, or calcar, on each hind lim" [Wikipedia:Platypus_venom#Spur_and_crural_gland]
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0011579 ! venom gland
relationship: part_of UBERON:0011581 ! calcaneus spur
relationship: secretes UBERON:0007113 ! venom
[Term]
id: UBERON:0011581
name: calcaneus spur
comment: Taxon notes: The female platypus, in common with echidnas, has rudimentary spur buds which do not develop (dropping off before the end of their first year) and lack functional crural glands
synonym: "ankle spur" RELATED []
synonym: "hind-leg spur" RELATED []
property_value: "present_in_taxon" NCBITaxon:9257
is_a: UBERON:0008784 ! lower limb segment
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0011582
name: skeleton of limb/fin
def: "The collection of all skeletal elements in an individual limb or fin." [UBERON:cjm]
synonym: "limb/fin skeleton" EXACT [VSAO:0000301]
xref: VSAO:0000301
property_value: UBPROP:0000001 "Skeletal subdivision that is part of the paired limb/fin.[VSAO]" xsd:string
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010912 ! subdivision of skeleton
relationship: subdivision_of UBERON:0004708
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0004708 ! limb/fin
relationship: develops_from UBERON:0003081 {source="ISBN:9780878932504"} ! lateral plate mesoderm
relationship: part_of UBERON:0002091 ! entire appendicular skeleton
relationship: part_of UBERON:0004708 ! limb/fin
relationship: subdivision_of UBERON:0004708 ! limb/fin
[Term]
id: UBERON:0011583
name: stylopodial skeleton
def: "Proximal element of a free limb skeleton consisting of the femur and humerus in the forelimb stylopodium and hindlimb stylopodium respectively[VSAO, modified]." [VSAO:0005007]
synonym: "propodium" RELATED [VSAO:0005007]
synonym: "stylopod" RELATED [VSAO:0005007]
xref: VSAO:0005007
property_value: UBPROP:0000001 "Proximal element of the limb skeleton consisting of the femur and humerus in the forelimb stylopodium and hindlimb stylopodium respectively.[VSAO]" xsd:string
is_a: UBERON:0010712 ! limb skeleton subdivision
relationship: subdivision_of UBERON:0002472
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002472 ! stylopod
relationship: part_of UBERON:0002472 ! stylopod
relationship: part_of UBERON:0004381 {source="VSAO"} ! skeleton of limb
relationship: subdivision_of UBERON:0002472 ! stylopod
[Term]
id: UBERON:0011584
name: zeugopodial skeleton
def: "Section of the forelimb skeleton located between the stylopodium and the autopodium." [VSAO:0005010]
synonym: "epipodium" RELATED [VSAO:0005010]
synonym: "skeleton of zeugopod" EXACT [UBERON:cjm]
synonym: "zeugopod skeleton" EXACT [UBERON:cjm]
synonym: "zygopodium" RELATED [VSAO:0005010]
xref: VSAO:0005010
is_a: UBERON:0010712 ! limb skeleton subdivision
relationship: subdivision_of UBERON:0002471
intersection_of: UBERON:0010912 ! subdivision of skeleton
intersection_of: subdivision_of UBERON:0002471 ! zeugopod
relationship: part_of UBERON:0002471 ! zeugopod
relationship: part_of UBERON:0004381 {source="VSAO"} ! skeleton of limb
relationship: subdivision_of UBERON:0002471 ! zeugopod
[Term]
id: UBERON:0011585
name: cell condensation
def: "Anatomical structure that is an aggregation of similar cells from which cartilages and bones form, and from which chondrogenesis and osteogenesis are initiated during repair and/or regeneration. (Hall and Miyake 1995)." [VSAO:0000006]
comment: Editor notes: consider obsoleting, coordinate with VSAO
xref: VSAO:0000006
xref: XAO:0004021
is_a: UBERON:0000061 {source="VSAO"} ! anatomical structure
[Term]
id: UBERON:0011586
name: proteinaceous extracellular matrix
comment: obsoleted as it was already present in GO
is_obsolete: true
[Term]
id: UBERON:0011587
name: pre-dentine
def: "Odontogenic tissue that is collagen-rich and characteristic of vertebrate teeth and tooth-like structures (e.g., odontodes) deposited by preodontoblasts and odontoblasts that are typically excluded from the matrix." [VSAO:0000071]
synonym: "pre-dentine tissue" EXACT [VSAO:curator]
synonym: "predentine tissue" EXACT [VSAO:curator]
xref: VSAO:0000071
xref: XAO:0004052
is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0002342 {source="UBERONREF:0000002"} ! neural crest
[Term]
id: UBERON:0011588
name: pre-enamel
def: "Odontogenic tissue that is avascular non-mineralized matrix that is deposited by preameloblast and ameloblasts that are excluded from the matrix." [VSAO:0000066]
synonym: "pre-enamel tissue" EXACT [VSAO:curator]
synonym: "preenamel tissue" EXACT [VSAO:curator]
xref: VSAO:0000066
xref: XAO:0004202
is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue
[Term]
id: UBERON:0011589
name: non-mineralized cartilage tissue
def: "Cartilage tissue that is not mineralized." [VSAO:0000089]
comment: Editor notes: add developmental relationships
xref: VSAO:0000089
xref: XAO:0004044
is_a: UBERON:0002418 {source="VSAO"} ! cartilage tissue
[Term]
id: UBERON:0011590
name: commissure of diencephalon
synonym: "diencephalon commissure" EXACT [FMA:62445]
xref: FMA:62445
is_a: UBERON:0005970 ! brain commissure
is_a: UBERON:0011591 ! tract of diencephalon
relationship: part_of UBERON:0001894
intersection_of: UBERON:0001020 ! commissure
intersection_of: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0011591
name: tract of diencephalon
synonym: "diencephalon tract" EXACT [FMA:62447]
xref: FMA:62447
is_a: UBERON:0007702 ! tract of brain
relationship: part_of UBERON:0001894
intersection_of: UBERON:0001018 ! axon tract
intersection_of: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0011592
name: future upper lip
synonym: "upper jaw future lip" EXACT [EHDAA2:0002120]
xref: EHDAA2:0002120
is_a: UBERON:0003235 ! epithelium of upper jaw
relationship: develops_from UBERON:0004068 ! medial nasal prominence
relationship: develops_from UBERON:0005868 ! maxillary prominence
relationship: part_of UBERON:0001709 {source="EHDAA2"} ! upper jaw region
[Term]
id: UBERON:0011593
name: maxillary tooth
def: "Tooth that is attached to a maxilla[TAO,modified]." [TAO:0001627]
xref: TAO:0001627
property_value: UBPROP:0000001 "Tooth that is attached to the maxilla.[TAO]" xsd:string
is_a: UBERON:0003267 ! tooth of upper jaw
relationship: attaches_to UBERON:0002397
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: attaches_to UBERON:0002397 ! maxilla
relationship: attaches_to UBERON:0002397 ! maxilla
relationship: part_of UBERON:0009680 ! set of upper jaw teeth
[Term]
id: UBERON:0011594
name: dentary tooth
def: "Tooth that is attached to a dentary/mandible[TAO,modified]." [TAO:0001628]
comment: Editor notes: Note that we treat dentary tooth and mandibular tooth as equivalent
synonym: "mandibular teeth" RELATED PLURAL [AAO:0000641]
synonym: "mandibular tooth" RELATED []
xref: AAO:0000125
xref: AAO:0000641
xref: TAO:0001628
property_value: UBPROP:0000001 "Tooth that is attached to the dentary.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of dentary tooth row (TAO:0001952)[TAO]" xsd:string
is_a: UBERON:0003268 ! tooth of lower jaw
relationship: attaches_to UBERON:0004742
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: attaches_to UBERON:0004742 ! dentary
relationship: attaches_to UBERON:0004742 ! dentary
relationship: part_of UBERON:0009679 ! set of lower jaw teeth
[Term]
id: UBERON:0011595
name: jaw region
comment: there are two jaw regions: the upper and lower
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0011596
name: future lower lip
synonym: "lower jaw future lip" EXACT [EHDAA2:0001020]
xref: EHDAA2:0001020
is_a: UBERON:0003236 ! epithelium of lower jaw
relationship: develops_from UBERON:0005867 {source="Wikipedia:Mandibular_prominence"} ! mandibular prominence
relationship: part_of UBERON:0001710 {source="EHDAA2"} ! lower jaw region
[Term]
id: UBERON:0011597
name: bone of upper jaw
def: "Any bone that is part of the upper jaw skeleton. This includes (when present): the maxilla, the quadrate (in some species)." [UBERON:cjm]
comment: Editor notes: Do not manually classify under here - bones are automatically classified
subset: grouping_class
synonym: "upper jaw bone" EXACT []
is_a: UBERON:0003457 ! head bone
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001709
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001709 ! upper jaw region
relationship: part_of UBERON:0001709 ! upper jaw region
relationship: part_of UBERON:0003277 ! skeleton of upper jaw
[Term]
id: UBERON:0011598
name: coronoid bone
synonym: "coronoid process" BROAD [TAO:0001673]
xref: AAO:0000103
xref: TAO:0001673
is_a: UBERON:0004768 ! bone of lower jaw
is_a: UBERON:0008907 {source="AAO"} ! dermal bone
relationship: part_of UBERON:0003113 {source="Kardong", notes="mandibular series"} ! dermatocranium
relationship: part_of UBERON:0003278 {source="AAO"} ! skeleton of lower jaw
[Term]
id: UBERON:0011599
name: lenticular process of incus
def: "the long ventral process of the incus which articulates with the stapes" [http://palaeos.com/vertebrates/glossary/glossaryJL.html]
comment: the lenticular process may be homologous to the shaft of the stapes and result from fusion of the former quadrate- stapes articulation. This speculation is consistent with the observation that artiodactyls have a very short lenticular process (Thewissen & Hussain (1993)), with perhaps greater length to the corresponding process of the stapes[http://palaeos.com/vertebrates/bones/ear/incus.html]
synonym: "incus crus longum" EXACT [http://palaeos.com]
synonym: "lenticular process" BROAD []
synonym: "processus lenticularis" BROAD []
synonym: "processus lenticularis (incus)" EXACT [FMA:52775]
xref: FMA:52775
xref: http://palaeos.com/vertebrates/bones/ear/images/Incus3.gif
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme
relationship: part_of UBERON:0001688 {source="FMA"} ! incus
[Term]
id: UBERON:0011601
name: gingiva of upper jaw
synonym: "gum of maxilla" EXACT []
synonym: "gum of upper jaw" EXACT [EMAPA:18970]
synonym: "upper jaw gingiva" EXACT [FMA:59763]
xref: EMAPA:18970
xref: FMA:59763
xref: SCTID:304703001
is_a: UBERON:0001828 ! gingiva
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001709
intersection_of: UBERON:0001828 ! gingiva
intersection_of: part_of UBERON:0001709 ! upper jaw region
relationship: part_of UBERON:0001709 ! upper jaw region
[Term]
id: UBERON:0011602
name: gingiva of lower jaw
synonym: "gum of lower jaw" EXACT [EMAPA:18967]
synonym: "gum of mandible" EXACT []
synonym: "lower jaw gingiva" EXACT [FMA:59764]
xref: EMAPA:18967
xref: FMA:59764
xref: SCTID:304704007
is_a: UBERON:0001828 ! gingiva
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001710
intersection_of: UBERON:0001828 ! gingiva
intersection_of: part_of UBERON:0001710 ! lower jaw region
relationship: part_of UBERON:0001710 ! lower jaw region
[Term]
id: UBERON:0011603
name: coronoid tooth
def: "Tooth that is attached to a coronoid bone." [UBERON:cjm]
synonym: "coronoid teeth" EXACT PLURAL [AAO:0000104]
xref: AAO:0000104
is_a: UBERON:0003268 ! tooth of lower jaw
relationship: attaches_to UBERON:0011598
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: attaches_to UBERON:0011598 ! coronoid bone
relationship: attaches_to UBERON:0011598 ! coronoid bone
relationship: part_of UBERON:0009679 ! set of lower jaw teeth
[Term]
id: UBERON:0011604
name: carina of sternum
def: "An extension of the sternum (breastbone) which runs axially along the midline of the sternum and extends outward, perpendicular to the plane of the ribs.." [Wikipedia:Keel_(bird)]
synonym: "carina" BROAD []
synonym: "keel" EXACT []
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Br%C3%A9chet.png/180px-Br%C3%A9chet.png
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0000975 ! sternum
[Term]
id: UBERON:0011605
name: supracoracoideus
def: "'A muscle in the bird's thorax region that originates from carina of the sternum, furcula, and sternal ribs and inserts onto proximal dorsal surface of the humerus. It acts as a primary elevator of the wing in upstroke. [Manual of Ornithology: Avian Structure and Function, by Proctor and Lynch, 1998]." [ID:KFC0000604]
synonym: "pectoralis minor" RELATED [ID:KFC0000604]
xref: http://upload.wikimedia.org/wikipedia/commons/0/02/Wing_Muscles%2C_color.svg
is_a: UBERON:0008196 ! muscle of pectoral girdle
relationship: has_muscle_insertion UBERON:0000976 ! humerus
relationship: has_muscle_origin UBERON:0002228 ! rib
relationship: has_muscle_origin UBERON:0007841 ! furcula
relationship: has_muscle_origin UBERON:0011604 ! carina of sternum
[Term]
id: UBERON:0011606
name: hyomandibular bone
def: "Replacement bone that is bilaterally paired and (in teleosts) articulates with the neurocranium dorsally and the opercle posteriorly[TAO,modified]." [TAO:0000672, Wikipedia:Hyomandibula]
comment: In most teleosts, there is a symplectic, and the hyomandibula articulates with it anteroventrally.
synonym: "hyomandibula" BROAD [TAO:0000672]
synonym: "hyomandibular" BROAD [TAO:0000672, Wikipedia:Hyomandibula]
xref: TAO:0000672
xref: VHOG:0000688
xref: ZFA:0000672
property_value: UBPROP:0000001 "Replacement bone that is bilaterally paired and articulates with the neurocranium dorsally and the opercle posteriorly.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps hyomandibula-opercle joint (TAO:0005265)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps hyomandibular-otic region joint (TAO:0001947)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps preopercle vertical limb-hyomandibula joint (TAO:0005278)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps quadrate-hyomandibula joint (TAO:0001801)[TAO]" xsd:string
is_a: UBERON:0002513 {source="TAO"} ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0011608 ! hyomandibular element
relationship: develops_from UBERON:0011607 {source="TAO"} ! hyomandibular cartilage
[Term]
id: UBERON:0011607
name: hyomandibular cartilage
def: "Cartilage form of the hyomandibular element." [UBERON:cjm]
comment: Taxon notes: The stapes is homologous to the hyomandibula. In this ontology, we use the class 'hyomandibular cartilage' generally to include the future stapes, the future hyomandibular bone of teleosts and the unossified cartilage in sharks.
synonym: "hyosymplectic cartilage" EXACT [ZFA:0001422]
synonym: "symplectic cartilage" EXACT [TAO:0001422]
xref: TAO:0001422
xref: VHOG:0000688
xref: ZFA:0001422
property_value: UBPROP:0000001 "Pharyngeal arch cartilage that is bilaterally paired and articulates with the chondrocranium dorsally, the opercle bone posteriorly, and the palatoquadrate cartilage anteriorly.[TAO]" xsd:string
is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage
is_a: UBERON:0011608 ! hyomandibular element
[Term]
id: UBERON:0011608
name: hyomandibular element
def: "the upper paired deep bone or cartilage of the hyoid region, sometimes taking part in jaw suspension and which supports the opercle. Dorsally it articulates with the otic capsule at the hyomandibular fossa, ventrally with the quadrate and symplectic. In most Teleostei it has a foramen for the hyomandibular branch of the facial nerve (VII)." [http://en.academic.ru/dic.nsf/en_ichthyology/8715/hyomandibula]
synonym: "epihyal" RELATED INCONSISTENT [http://palaeos.com/vertebrates/bones/gill_arches/gill_arches.html]
synonym: "hyomandibula element" EXACT []
xref: TAO:0000672
xref: VHOG:0000688
property_value: UBPROP:0000001 "Replacement bone that is bilaterally paired and articulates with the neurocranium dorsally and the opercle posteriorly.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps hyomandibula-metapterygoid joint (TAO:0001979)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps hyomandibula-opercle joint (TAO:0005265)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps hyomandibular-otic region joint (TAO:0001947)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps preopercle vertical limb-hyomandibula joint (TAO:0005278)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps quadrate-hyomandibula joint (TAO:0001801)[TAO]" xsd:string
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010522 ! replacement element
relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton
[Term]
id: UBERON:0011609
name: ceratohyal element
synonym: "keratohyal element" RELATED []
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010522 ! replacement element
relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch skeleton
[Term]
id: UBERON:0011610
name: ceratohyal cartilage
xref: TAO:0001400
xref: ZFA:0001400
property_value: UBPROP:0000001 "Pharyngeal arch cartilage that is bilaterally paired and the largest cartilaginous component of the ventral hyoid arch.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps ceratohyal-branchiostegal ray joint (TAO:0001850)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps dorsal hypohyal-urohyal joint (TAO:0001847)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps epihyal-branchiostegal ray joint (TAO:0001849)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps inter-ventral hypohyal joint (TAO:0001846)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps interhyal-epihyal joint (TAO:0001841)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps ventral hypohyal-urohyal joint (TAO:0001848)[TAO]" xsd:string
is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage
is_a: UBERON:0011609 ! ceratohyal element
[Term]
id: UBERON:0011611
name: ceratohyal bone
synonym: "anterior ceratohyal" EXACT [TAO:0000578]
synonym: "anterohyal" EXACT [TAO:0000578]
synonym: "ceratohyal" EXACT [TAO:0000578]
synonym: "ceratohyal anterior" EXACT [TAO:0000578]
synonym: "ceratohyal bone" EXACT [TAO:0000578]
synonym: "ceratohyale" RELATED [AAO:0000666]
synonym: "ceratohyoid" NARROW SENSU []
synonym: "ceratohyoid bone" EXACT []
synonym: "distal ceratohyal" EXACT [TAO:0000578]
synonym: "hyale" RELATED [AAO:0000666]
synonym: "hyoid" RELATED [AAO:0000666]
synonym: "keratohyale" RELATED [AAO:0000666]
synonym: "rostral ceratohyal" EXACT [TAO:0000578]
synonym: "zungenbeinknorpel" RELATED [AAO:0000666]
xref: AAO:0000666
xref: SCTID:370641002
xref: TAO:0000578
xref: ZFA:0000578
property_value: "homologous_to" UBERON:0003998
property_value: UBPROP:0000001 "Replacement bone that is bilaterally paired and articulates with the hypohyal cartilage or bone, dorsal and ventral hypohyals, and posterior ceratohyal posteriorly.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps ceratohyal-branchiostegal ray joint (TAO:0001850)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps ceratohyal-dorsal hypohyal joint (TAO:0001843)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps ceratohyal-ventral hypohyal joint (TAO:0001844)[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: overlaps epihyal-ceratohyal joint (TAO:0001842)[TAO]" xsd:string
is_a: UBERON:0002513 {source="TAO"} ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0011609 ! ceratohyal element
relationship: develops_from UBERON:0011610 {source="TAO"} ! ceratohyal cartilage
[Term]
id: UBERON:0011612
name: hypohyal cartilage
xref: TAO:0001868
property_value: UBPROP:0000001 "Pharyngeal arch cartilage that is bilaterally paired and articulates posteriorly with the ceratohyal cartilage.[TAO]" xsd:string
is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage
is_a: UBERON:0011613 ! hypohyal element
[Term]
id: UBERON:0011613
name: hypohyal element
def: "The hypohyal is a ventral element of the hyoid arch which links the ceratohyal and the basihyal." [http://palaeos.com/vertebrates/bones/gill_arches/hypohyal.html]
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010522 ! replacement element
relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch skeleton
[Term]
id: UBERON:0011614
name: basihyal element
def: "Skeletal element that is median and is the anterior-most element of the ventral hyoid arch." [TAO:0001891]
xref: TAO:0001891
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0010522 ! replacement element
relationship: part_of UBERON:0011153 {source="TAO"} ! ventral hyoid arch skeleton
[Term]
id: UBERON:0011615
name: basihyal cartilage
def: "Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch." [TAO:0001510]
synonym: "copula 1" EXACT [TAO:0001510]
xref: TAO:0001510
xref: ZFA:0001510
is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage
is_a: UBERON:0011614 {source="TAO"} ! basihyal element
[Term]
id: UBERON:0011618
name: basihyal bone
def: "Replacement bone that is median and is the anterior-most bone of the ventral hyoid arch." [TAO:0000316]
synonym: "basihyoid" EXACT [TAO:0000316]
synonym: "glossohyal" EXACT [TAO:0000316]
xref: TAO:0000316
xref: VSAO_RETIRED:0000007
xref: ZFA:0000316
property_value: "homologous_to" UBERON:0003999
is_a: UBERON:0002513 {source="TAO"} ! endochondral bone
is_a: UBERON:0003462 ! facial bone
is_a: UBERON:0011614 {source="TAO"} ! basihyal element
relationship: develops_from UBERON:0011615 {source="TAO"} ! basihyal cartilage
[Term]
id: UBERON:0011619
name: stylohyoid bone
def: "This is the paired bone that makes up the segment of the mammalian hyoid apparatus connecting the epihyoids with the skull via the tympanohyoid cartilages on each side. Ventrally, it defines the medial and lateral compartments of the guttural pouch in the horse." [MURDOCH:1758]
comment: Taxon notes: The stylohyoid bone is one of the four bones ( stylohyoid, ceratohyoid, basihyoid, thyrohyoid) of the hyoid apparatus in the horse. Other species have five bones, the fifth being the epihyoid that is not present in the horse. The stylohyoid bone in the horse is significantly larger compared to other bones of the hyoid apparatus and divides the guttural pouch into two chambers, medial and lateral. The hyoid apparatus consists of a series of bony rods, jointed together and forming a means of suspending the tongue and larynx from the skull[MURDOCH]
xref: SCTID:370715004
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! facial bone
relationship: part_of UBERON:0010272 ! hyoid apparatus
[Term]
id: UBERON:0011620
name: basihyal lingual process
def: "A projection on the basihyal bone. Laterally the lingual process is compressed. It has a blunt pointed free end, and its lateral surfaces are slightly concave. The dorsal border is thin and irregular, and the ventral border is thick and rough. In the living animal the lingual process is embedded within the root of the tongue." [MURDOCH:1080]
synonym: "lingual process of basihyoid" EXACT []
synonym: "lingual process of basihyoid bone" EXACT []
synonym: "lingual process of hyoid" RELATED []
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004530 ! bony projection
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0011618 ! basihyal bone
[Term]
id: UBERON:0011621
name: thyrohyoid cartilage
def: "This small finger of cartilage completes the connection between the thyrohyoid bone and the thyroid cartilage (rostral cornu)" [MURDOCH:2033]
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0011004 {source="TAO"} ! pharyngeal arch cartilage
relationship: connects UBERON:0011622 ! thyrohyoid bone
relationship: connects UBERON:0011623 ! horn of thyroid cartilage
relationship: part_of UBERON:0010272 ! hyoid apparatus
[Term]
id: UBERON:0011622
name: thyrohyoid bone
def: "Is a laterally bowed, sagitally compressed, slender element that extends from dorsocaudally from the lateral parts of the basihyoid. It connects the basiohyoid with the rostral corner of the thyroid cartlilage of the larynx." [MURDOCH:1951]
xref: SCTID:370708007
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! facial bone
relationship: connects UBERON:0011618 ! basihyal bone
relationship: connects UBERON:0011623 ! horn of thyroid cartilage
relationship: part_of UBERON:0010272 ! hyoid apparatus
[Term]
id: UBERON:0011623
name: horn of thyroid cartilage
synonym: "cornu of thyroid cartilage" EXACT [FMA:55300]
synonym: "thyroid cartilage horn" EXACT [FMA:55300]
xref: FMA:55300
xref: SCTID:279518009
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0001738 ! thyroid cartilage
[Term]
id: UBERON:0011624
name: superior horn of thyroid cartilage
def: "The superior horn of thyroid cartilage is long and narrow, directed upward, backward, and medialward, and ends in a conical extremity, which gives attachment to the lateral hyothyroid ligament." [Wikipedia:Superior_horn_of_thyroid_cartilage]
synonym: "cornu superius (cartilago thyroidea)" EXACT [FMA:55294]
synonym: "cornu superius cartilaginis thyroideae" EXACT LATIN []
synonym: "superior cornu of thyroid cartilage" EXACT [FMA:55294]
xref: FMA:55294
xref: SCTID:279520007
is_a: UBERON:0011623 {source="FMA"} ! horn of thyroid cartilage
[Term]
id: UBERON:0011625
name: inferior horn of thyroid cartilage
def: "The inferior horn of thyroid cartilage is short and thick; it is directed downward, with a slight inclination forward and medialward, and presents, on the medial side of its tip, a small oval articular facet for articulation with the side of the cricoid cartilage." [Wikipedia:Inferior_horn_of_thyroid_cartilage]
synonym: "cornu inferius (cartilago thyroidea)" EXACT [FMA:55297]
synonym: "cornu inferius cartilaginis thyroideae" EXACT LATIN []
xref: FMA:55297
xref: SCTID:279521006
is_a: UBERON:0011623 {source="FMA"} ! horn of thyroid cartilage
[Term]
id: UBERON:0011626
name: tympanohyoid cartilage
def: "the terminal segment in the chain of skeletal elements of the hyoid apparatus. One of a pair of rods of cartilage that connect the hyoid bone to the styloid process of the petrous part of the temporal bone" [http://medical-dictionary.thefreedictionary.com/tympanohyoid]
xref: SCTID:370702008
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0011004 ! pharyngeal arch cartilage
relationship: connects UBERON:0001685 ! hyoid bone
relationship: connects UBERON:0003960 ! styloid process of temporal bone
relationship: part_of UBERON:0010272 ! hyoid apparatus
[Term]
id: UBERON:0011627
name: orbital part of frontal bone
def: "The orbital or horizontal part of the frontal bone (pars orbitalis) consists of two thin triangular plates, the orbital plates, which form the vaults of the orbits, and are separated from one another by a median gap, the ethmoidal notch." [Wikipedia:Orbital_part_of_frontal_bone]
synonym: "pars orbitalis" RELATED [Wikipedia:Orbital_part_of_frontal_bone]
synonym: "pars orbitalis (os frontale)" EXACT [FMA:52849]
xref: FMA:52849
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0000209 ! tetrapod frontal bone
relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium
[Term]
id: UBERON:0011628
name: early premaxilla
xref: EHDAA2:0001495
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0007842 {source="EHDAA2"} ! membrane bone
is_a: UBERON:0010313 ! neural crest-derived structure
is_a: UBERON:0011597 ! bone of upper jaw
relationship: develops_from UBERON:0010334 {source="EHDAA2"} ! maxillary process mesenchyme from neural crest
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0003113 {source="Kardong"} ! dermatocranium
relationship: part_of UBERON:0003277 {source="EHDAA2"} ! skeleton of upper jaw
relationship: part_of UBERON:0009526 {source="EHDAA2"} ! maxillary process mesenchyme
[Term]
id: UBERON:0011629
name: supratemporal bone
synonym: "supratemporal" EXACT []
is_a: UBERON:0002514 ! intramembranous bone
relationship: part_of UBERON:0003113 {source="Kardong", notes="temporal series"} ! dermatocranium
[Term]
id: UBERON:0011630
name: intertemporal bone
synonym: "intertemporal" EXACT []
is_a: UBERON:0002514 ! intramembranous bone
relationship: part_of UBERON:0003113 {source="Kardong", notes="temporal series"} ! dermatocranium
[Term]
id: UBERON:0011631
name: tabular bone
synonym: "tabular" EXACT []
is_a: UBERON:0002514 ! intramembranous bone
relationship: part_of UBERON:0003113 {source="Kardong", notes="temporal series"} ! dermatocranium
[Term]
id: UBERON:0011634
name: ectopterygoid bone
def: "a palatal bone which -- like many palatal bones -- may originally have developed as a dermal bone replacing part of the palatoquadrate, the primitive upper jaw. Like the palatine (also called dermopalatine), the ectopterygoid replaces the middle part of the autopalatine. It may be serially homologous with the palatine(s), but is somewhat specialized, being the last (most posterior in palatal view) of the series and bordering the fossa for the jaw muscles. In a typical tetrapod it abuts the palatine anteriorly, the maxilla laterally, the pterygoid or the fossa mandubuaris medially, and the fossa posteriorly" [http://palaeos.com/vertebrates/glossary/glossaryE.html]
comment: Editor notes: taken from TAO but is present in tetrapods
synonym: "ectopterygoid" EXACT [TAO:0000656]
xref: TAO:0000656
xref: ZFA:0000656
property_value: UBPROP:0000001 "Dermal bone that forms the lateral border of the palate and articulates with the quadrate posteriorly, the entopterygoid medially and the dermopalatine and/or autopalatine antero-laterally. The ectopterygoid is a paired bone.[TAO]" xsd:string
is_a: UBERON:0008907 {source="TAO"} ! dermal bone
relationship: part_of UBERON:0003113 {source="Kardong", notes="palatal series"} ! dermatocranium
[Term]
id: UBERON:0011635
name: splenial bone
synonym: "splenial" EXACT [AAO:0000573]
xref: AAO:0000573
xref: http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif
is_a: UBERON:0004768 ! bone of lower jaw
is_a: UBERON:0008907 {source="AAO"} ! dermal bone
relationship: part_of UBERON:0003113 {source="Kardong", notes="mandibular series"} ! dermatocranium
relationship: part_of UBERON:0003278 {source="AAO"} ! skeleton of lower jaw
[Term]
id: UBERON:0011636
name: surangular bone
def: "The surangular is a dermal bone of the lower jaw. It typically covers much of the dorsal and lateral surface of the posterior jaw and variably extends onto the medial (inside) surface. The surangular articulates with and supports the articular, which forms the jaw joint with the quadrate in most vertebrates, and is in turn supported by the angular. More distally, the surangular bridges the mandibular fenestra, if one is present. It may also bear a raised dorsal coronoid process, an important attachment site for the mandibular adductors. At its distal (or rostral) end, the surangular meets the dentary, the main tooth-bearing bone of the lower jaw in most vertebrates." [http://palaeos.com/vertebrates/bones/dermal/mandibular-surangular.html]
comment: Taxon notes: "Nevertheless, it is not completely clear that this[osteichthyans] surangular is homologous with the surangular in tetrapods"[paleos] In some lepospondyls, and in frogs and salamanders, the surangular is absent. However, it becomes increasingly significant in the anthracosaur lineage. In turtles, it is one of the two principle bones of the lower jaw. In lepidosaurs, it is less important because of the development of a separate coronoid bone. In advanced lizards and pythonomorphs, it may fuse with the articular and perhaps other bones and loses its separate identity. In syanapsids, a secondary jaw joint develops between the surangular and the squamosal, which becomes the unique mammalian jaw articulation. However, the surangular fuses with the dentary and becomes the unitary mammalian "mandible" without a separate identity
synonym: "surangular" EXACT [TAO:0002287]
xref: http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif
xref: http://palaeos.com/vertebrates/bones/dermal/images/Surangular1.gif
xref: TAO:0002287
property_value: UBPROP:0000001 "Dermal bone of the suspensorium.[TAO]" xsd:string
is_a: UBERON:0004768 ! bone of lower jaw
is_a: UBERON:0008907 {source="TAO"} ! dermal bone
relationship: connected_to UBERON:0004744 ! articular/anguloarticular
relationship: part_of UBERON:0003113 {source="Kardong", notes="mandibular series"} ! dermatocranium
relationship: part_of UBERON:0003278 {source="paleos.com"} ! skeleton of lower jaw
[Term]
id: UBERON:0011637
name: prearticular bone
def: "Osseous element of intramembranous origin that extends along the lingual margin of Meckel's cartilage." [AAO:0000458]
synonym: "prearticular" EXACT [AAO:0000458]
xref: AAO:0000458
xref: http://palaeos.com/vertebrates/bones/dermal/images/Dentary1.gif
is_a: UBERON:0004768 ! bone of lower jaw
is_a: UBERON:0008907 {source="AAO"} ! dermal bone
relationship: part_of UBERON:0003113 {source="Kardong", notes="mandibular series"} ! dermatocranium
relationship: part_of UBERON:0003278 {source="AAO"} ! skeleton of lower jaw
[Term]
id: UBERON:0011638
name: pharyngeal arch 8
synonym: "branchial arch 6" RELATED []
synonym: "gill arch 6" EXACT []
synonym: "visceral arch 8" EXACT []
property_value: "pharyngeal_arch_number" "8" xsd:nonNegativeInteger
is_a: UBERON:0008896 {source="TAO"} ! post-hyoid pharyngeal arch
[Term]
id: UBERON:0011639
name: frontoparietal bone
def: "A anuran dermal bone that usually is paired and roofs the braincase." [AAO:0000207]
synonym: "fronto-parietaux" RELATED [AAO:0000207]
synonym: "frontoparietal" EXACT [AAO:0000207]
synonym: "os fronto-parietale" RELATED [AAO:0000207]
synonym: "parietaux" RELATED [AAO:0000207]
synonym: "parietofrontal" RELATED [AAO:0000207]
xref: AAO:0000207
property_value: "has_fused_element" UBERON:0000209
property_value: "has_fused_element" UBERON:0000210
is_a: UBERON:0008907 {source="AAO"} ! dermal bone
relationship: part_of UBERON:0003113 {source="Kardong", notes="orbital series"} ! dermatocranium
[Term]
id: UBERON:0011640
name: palatoglossal arch
def: "A fold that lies between the mouth and pharynx and marks the posterior border of the mouth" [ISBN10:0073040584, Wikipedia:Palatoglossal_arch]
synonym: "anterior pillar of fauces" EXACT [FMA:55024]
synonym: "arcus glossopalatinus" EXACT [Wikipedia:Palatoglossal_arch]
synonym: "arcus palatoglossus" EXACT [Wikipedia:Palatoglossal_arch]
synonym: "glossopalatine arch" EXACT [FMA:55024]
synonym: "plica anterior faucium" EXACT [FMA:TA]
xref: FMA:55024
xref: SCTID:276958001
is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster
is_a: UBERON:0004119 ! endoderm-derived structure
relationship: adjacent_to UBERON:0000165 ! mouth
relationship: adjacent_to UBERON:0001042 ! chordate pharynx
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0011641
name: odontogenic papilla of molar
def: "A odontogenic papilla that is part of a molar tooth [Obol]." [OBOL:automatic]
synonym: "molar mesenchyme" EXACT [UBERON:cjm]
synonym: "molar odontogenic papilla" EXACT [OBOL:automatic]
synonym: "molar tooth odontogenic papilla" EXACT [OBOL:automatic]
synonym: "odontogenic papilla of molar tooth" EXACT [OBOL:automatic]
is_a: UBERON:0001763 ! odontogenic papilla
is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest
relationship: part_of UBERON:0003655
intersection_of: UBERON:0001763 ! odontogenic papilla
intersection_of: part_of UBERON:0003655 ! molar tooth
relationship: develops_from UBERON:0010259 {source="EHDAA2-abduced"} ! 1st arch mesenchyme from neural crest
relationship: part_of UBERON:0003655 ! molar tooth
[Term]
id: UBERON:0011642
name: oral epithelium from ectoderm
xref: EHDAA2:0004137
is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium
is_a: UBERON:0003350 ! epithelium of mucosa
is_a: UBERON:0003929 ! gut epithelium
is_a: UBERON:0004807 ! respiratory system epithelium
is_a: UBERON:0010371 ! ecto-epithelium
relationship: develops_from UBERON:0000924
relationship: part_of UBERON:0002424
intersection_of: UBERON:0000483 ! epithelium
intersection_of: develops_from UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0002424 ! oral epithelium
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0009479 {source="EHDAA2"} ! ectoderm of buccopharyngeal membrane
relationship: part_of UBERON:0002424 ! oral epithelium
[Term]
id: UBERON:0011643
name: puboischiofemoralis internus muscle
def: " a single large dorsal limb rotator muscle in lower tetrapods that runs from the lumber region and girdle to the femur." [ISBN10:0073040584]
comment: Taxon notes: 3 muscles differentiate from this: psoas, iliacus and pectineus.
synonym: "puboischiofemoralis internus" EXACT []
is_a: UBERON:0001325 ! muscle of pelvis
is_a: UBERON:0004518 ! muscle of vertebral column
relationship: has_muscle_insertion UBERON:0000981 {source="Kardong"} ! femur
relationship: has_muscle_origin UBERON:0002414 {source="Kardong"} ! lumbar vertebra
[Term]
id: UBERON:0011644
name: puboischiofemoralis externus muscle
def: " a single large ventral muscle in lower tetrapods that runs from the pubis and aschium to the femur." [ISBN10:0073040584]
comment: Taxon notes: obturator externus and quadratus femoris are derivatives
synonym: "puboischiofemoralis externus" EXACT []
is_a: UBERON:0001325 ! muscle of pelvis
relationship: has_muscle_insertion UBERON:0000981 {source="Kardong"} ! femur
relationship: has_muscle_origin UBERON:0001274 ! ischium
relationship: has_muscle_origin UBERON:0001275 ! pubis
[Term]
id: UBERON:0011645
name: iliofemoralis muscle
def: "Limb extensor that runs from ilium to femur." [ISBN10:0073040584]
synonym: "iliofemoralis" EXACT []
is_a: UBERON:0001325 ! muscle of pelvis
relationship: has_muscle_insertion UBERON:0000981
relationship: has_muscle_origin UBERON:0001273
intersection_of: UBERON:0001325 ! muscle of pelvis
intersection_of: has_muscle_insertion UBERON:0000981 ! femur
intersection_of: has_muscle_origin UBERON:0001273 ! ilium
relationship: has_muscle_insertion UBERON:0000981 ! femur
relationship: has_muscle_origin UBERON:0001273 ! ilium
[Term]
id: UBERON:0011646
name: patagialis muscle
subset: grouping_class
is_a: UBERON:0008196 ! muscle of pectoral girdle
relationship: has_muscle_insertion UBERON:0002374 ! metacarpal bone
relationship: has_muscle_origin UBERON:0001105 ! clavicle
relationship: part_of UBERON:0010856 ! patagium
[Term]
id: UBERON:0011647
name: depressor mandibulae muscle
comment: Taxon notes: Homolog of levator operculi and epihyoidean - or in mammals, the stapedius (the digastric opens the jaws)[Kardong] The (sphenodon) m. Depressor Mandibulae originates from the posterodorsal edge of the parietal and squamosal, and from a small mid-line portion of connective tissue[http://palaeo-electronica.org/2009_2/179/other.htm]
synonym: "depressor labi mandibularis" EXACT []
synonym: "depressor labi mandibularis muscle" EXACT []
synonym: "depressor mandibulae" EXACT [AAO:0010715]
xref: AAO:0010715
xref: VHOG:0000813
is_a: UBERON:0001577 ! facial muscle
is_a: UBERON:0011648 {source="AAO"} ! jaw muscle
relationship: develops_from UBERON:0003066 {source="Kardong"} ! pharyngeal arch 2
relationship: has_muscle_nerve UBERON:0001647 {source="Kardong"} ! facial nerve
[Term]
id: UBERON:0011648
name: jaw muscle
synonym: "mandibular muscle" EXACT [TAO:0000236]
xref: AAO:0000247
xref: TAO:0000236
xref: XAO:0003269
xref: ZFA:0000236
is_a: UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0011649
name: levator operculi
def: "Hyoid muscle that originates at the ventrolateral margin of the pterotic and inserts in the dorsomesial edge of the opercle. The levator operculi is responible for jaw depression, its force of contraction is transmitted through the opercular series and the interoperculo-mandibular ligament to the lower jaw." [ZFA:0000537]
comment: inserts onto operculum[Kardong]
synonym: "levator operculae" EXACT [ZFA:0000537]
synonym: "levator operculi muscle" EXACT []
xref: TAO:0000537
xref: VHOG:0000813
xref: ZFA:0000537
is_a: UBERON:0001577 ! facial muscle
is_a: UBERON:0005493 {source="ZFA"} ! hyoid muscle
relationship: develops_from UBERON:0003066 {source="Kardong"} ! pharyngeal arch 2
relationship: has_muscle_nerve UBERON:0001647 {source="Kardong"} ! facial nerve
[Term]
id: UBERON:0011650
name: epihyoidean
comment: Muscle in sharks that is homologous to levator operculi and depressor mandibulae / stapedius
xref: VHOG:0000813
is_a: UBERON:0001577 ! facial muscle
is_a: UBERON:0005493 ! hyoid muscle
relationship: develops_from UBERON:0003066 {source="Kardong"} ! pharyngeal arch 2
relationship: has_muscle_nerve UBERON:0001647 {source="Kardong"} ! facial nerve
[Term]
id: UBERON:0011651
name: ventral head of rib
def: "Ventral head of a bicapitate rib. It articulates with the parapophysis[AAO]." [AAO:0000723]
comment: Taxon notes: Ribs of primitive tetrapods are bicipital (having two heads)[Kardong].
synonym: "capitulum" NARROW []
synonym: "capitulum of rib" EXACT [AAO:0000723]
xref: AAO:0000723
is_a: UBERON:0002230 ! head of rib
relationship: connected_to UBERON:0003109
intersection_of: UBERON:0002230 ! head of rib
intersection_of: connected_to UBERON:0003109 ! parapophysis
relationship: connected_to UBERON:0003109 ! parapophysis
[Term]
id: UBERON:0011652
name: dorsal head of rib
def: "Dorsal head of a bicapitate rib. It articulates with the diapophysis[AAO]." [AAO:0000722]
comment: Taxon notes: Ribs of primitive tetrapods are bicipital (having two heads)[Kardong]. Terminology notes: sometimes called the tuberculum, but not to be confused with the tubercle, which is between body and neck
synonym: "tuberculum" BROAD [AAO:0000722]
synonym: "tuberculum of rib" EXACT []
xref: AAO:0000722
is_a: UBERON:0002230 ! head of rib
relationship: connected_to UBERON:0011653
intersection_of: UBERON:0002230 ! head of rib
intersection_of: connected_to UBERON:0011653 ! diapophysis of rib
relationship: connected_to UBERON:0011653 ! diapophysis of rib
[Term]
id: UBERON:0011653
name: diapophysis of rib
def: "Paired processes that arise near the midpoint of the neural arch lamina, for the attachment of the tuberculum of two-headed ribs. Also called transverse processes. In anurans, the term diapophysis is used in reference to the modified transverse processes of the sacral vertebra elaborated for support of the pelvic girdle." [AAO:0000706]
synonym: "diapophysis" EXACT [AAO:0000706]
xref: AAO:0000706
is_a: UBERON:0004529 {source="AAO"} ! anatomical projection
relationship: part_of UBERON:0003861 {source="Kardong"} ! neural arch
[Term]
id: UBERON:0011655
name: interclavicle
def: "Dermal bone of pectoral girdle that is median and ventral in position." [VSAO:0000161]
comment: See discussion on pectoral girdles - change relationship to overlaps? Kardong: enlarged oval scale. // Present in therapids and monotremes, reduced in size in marsupials and placentals.
xref: VSAO:0000161
is_a: UBERON:0007829 ! pectoral girdle bone
is_a: UBERON:0008907 {source="VSAO"} ! dermal bone
relationship: part_of UBERON:0007831 {source="VSAO"} ! skeleton of pectoral girdle
[Term]
id: UBERON:0011657
name: dermal element of plastron
def: "Fused ventral dermal element constituting the plastron." [ISBN10:0073040584]
synonym: "plastral plate" RELATED [ISBN10:0073040584]
is_a: UBERON:0008907 ! dermal bone
relationship: part_of UBERON:0008276 ! plastron
[Term]
id: UBERON:0011658
name: epiplastron
def: "A paired bone at the anterior margin of the plastron." [ISBN10:0073040584]
synonym: "clavicle" RELATED [ISBN10:0073040584]
is_a: UBERON:0011657 ! dermal element of plastron
[Term]
id: UBERON:0011659
name: entoplastron
def: "A median bone at the anterior margin of the plastron." [ISBN10:0073040584]
synonym: "interclavicle" RELATED [ISBN10:0073040584]
property_value: "has_fused_element" UBERON:0001105
is_a: UBERON:0011657 ! dermal element of plastron
[Term]
id: UBERON:0011660
name: hypoplastron
is_a: UBERON:0011657 ! dermal element of plastron
[Term]
id: UBERON:0011661
name: xiphiplastron
is_a: UBERON:0011657 ! dermal element of plastron
[Term]
id: UBERON:0011662
name: plastron-carapice bridge
synonym: "bridge struct" RELATED []
is_a: UBERON:0000075 ! subdivision of skeletal system
relationship: part_of UBERON:0008276 ! plastron
[Term]
id: UBERON:0011663
name: anterior plastron-carapice bridge
synonym: "anterior bridge struct" RELATED []
is_a: UBERON:0011662 ! plastron-carapice bridge
[Term]
id: UBERON:0011664
name: posterior plastron-carapice bridge
synonym: "posterior bridge struct" RELATED []
is_a: UBERON:0011662 ! plastron-carapice bridge
[Term]
id: UBERON:0011665
name: carapace bone
def: "Fused dorsal element constituting the carapace of a turtle shell." [ISBN10:0073040584]
comment: The carapace contains a mix of dermal bone and rib cage
synonym: "carapace plate" RELATED []
is_a: UBERON:0001474 ! bone
relationship: part_of UBERON:0008275 ! carapace
[Term]
id: UBERON:0011666
name: peripheral plate of carapace
def: "One of a series of bones around the edge of the carapace." [ISBN10:0073040584]
is_a: UBERON:0011665 ! carapace bone
[Term]
id: UBERON:0011667
name: pleural plate of carapace
def: "One of eight pairs of plates on the carapace, forming two rows adjacent to the peripheral plates." [ISBN10:0073040584]
comment: A combination of ribs and fused dermal bone[WP]
is_a: UBERON:0011665 ! carapace bone
[Term]
id: UBERON:0011668
name: nuchal plate of carapace
def: "." [ISBN10:0073040584]
is_a: UBERON:0011665 ! carapace bone
[Term]
id: UBERON:0011669
name: neural plate of carapace
def: "One of a series of plates on the dorsal midline of the turtle shell, posterior to the nuchal bone." [ISBN10:0073040584]
comment: In many species of Pleurodire they are submerged below the pleurals[WP]
is_a: UBERON:0011665 ! carapace bone
[Term]
id: UBERON:0011670
name: pygal plate of carapace
def: "One of three plates on the posterior end of the carapace, posterior to the neural plates." [ISBN10:0073040584]
is_a: UBERON:0011665 ! carapace bone
[Term]
id: UBERON:0011671
name: nuchal bone
def: "A single bone on the anterior end of the carapace." [ISBN10:0073040584]
is_a: UBERON:0011665 ! carapace bone
[Term]
id: UBERON:0011672
name: suprapygal bone
def: "." [ISBN10:0073040584]
is_a: UBERON:0011665 ! carapace bone
[Term]
id: UBERON:0011673
name: plastron scute
is_a: UBERON:0008201 ! scute
relationship: part_of UBERON:0008276
intersection_of: UBERON:0008201 ! scute
intersection_of: part_of UBERON:0008276 ! plastron
relationship: part_of UBERON:0008276 ! plastron
[Term]
id: UBERON:0011674
name: carapace scute
is_a: UBERON:0008201 ! scute
relationship: part_of UBERON:0008275
intersection_of: UBERON:0008201 ! scute
intersection_of: part_of UBERON:0008275 ! carapace
relationship: part_of UBERON:0008275 ! carapace
[Term]
id: UBERON:0011675
name: perichordal ring
def: "Enlarged section of perichordal tube that is arranged serially but out of phase with segmental musculature." [ISBN10:0073040584]
xref: AAO:0000738
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
relationship: part_of UBERON:0007862 {source="AAO"} ! perichordal tissue
[Term]
id: UBERON:0011676
name: axial subdivision of organism
def: "A major subdivision of an organism that divides an organism along its anterio-posterior axis. In vertebrates, this is based on the vertebral column." [UBERON:cjm]
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0011677
name: trunk vertebra
def: "A vertebra in the trunk region. For tetrapods, includes lumbar and thoracic vertebrae. Excludes cervical, caudal, sacral (if present)." [UBERONREF:0000006]
synonym: "abdominal vertebra" RELATED [TAO:0000263]
synonym: "thoracolumbar vertebra" EXACT []
synonym: "trunk vertebra" RELATED [TAO:0000263]
xref: TAO:0000263
xref: ZFA:0000263
property_value: UBPROP:0000001 "Post-Weberian vertebrae lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal. Bird and Mabee, 2003.[TAO]" xsd:string
is_a: UBERON:0003463 ! trunk bone
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004247 ! back bone
is_a: UBERON:0004451 ! trunk or cervical vertebra
relationship: part_of UBERON:0009568
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0009568 ! trunk region of vertebral column
relationship: part_of UBERON:0009568 ! trunk region of vertebral column
[Term]
id: UBERON:0011678
name: hindlimb intermedium
synonym: "intermedium (hind)" EXACT [AAO:0000923]
xref: AAO:0000923
is_a: UBERON:0011679 ! proximal tarsal bone
[Term]
id: UBERON:0011679
name: proximal tarsal bone
is_a: UBERON:0001447 ! tarsal bone
relationship: connected_to UBERON:0010720
intersection_of: UBERON:0001447 ! tarsal bone
intersection_of: connected_to UBERON:0010720 ! hindlimb zeugopod skeleton
relationship: connected_to UBERON:0010720 ! hindlimb zeugopod skeleton
[Term]
id: UBERON:0011683
name: adductor mandibulae
synonym: "dorsal adductor mandibulae" EXACT [ZFA:0007049]
synonym: "m. adductor mandibulae" EXACT []
xref: TAO:0007049
xref: ZFA:0007049
is_a: UBERON:0011648 {source="ZFA"} ! jaw muscle
relationship: develops_from UBERON:0004362 {source="Kardong"} ! pharyngeal arch 1
relationship: has_muscle_nerve UBERON:0000375 {source="Kardong"} ! mandibular nerve
[Term]
id: UBERON:0011684
name: levator palatoquadrati
is_a: UBERON:0011648 {source="Kardong"} ! jaw muscle
relationship: develops_from UBERON:0004362 {source="Kardong"} ! pharyngeal arch 1
relationship: has_muscle_nerve UBERON:0000375 {source="Kardong"} ! mandibular nerve
[Term]
id: UBERON:0011685
name: preorbitalis
is_a: UBERON:0011648 {source="Kardong"} ! jaw muscle
relationship: develops_from UBERON:0004362 {source="Kardong"} ! pharyngeal arch 1
relationship: has_muscle_nerve UBERON:0000375 {source="Kardong"} ! mandibular nerve
relationship: part_of UBERON:0011683 {source="Kardong"} ! adductor mandibulae
[Term]
id: UBERON:0011686
name: spiracularis
is_a: UBERON:0011648 {source="Kardong"} ! jaw muscle
relationship: develops_from UBERON:0004362 {source="Kardong"} ! pharyngeal arch 1
relationship: has_muscle_nerve UBERON:0000375 {source="Kardong"} ! mandibular nerve
[Term]
id: UBERON:0011687
name: levator hyomandibulae muscle
synonym: "levator hyomandibulae" EXACT []
is_a: UBERON:0001577 ! facial muscle
is_a: UBERON:0005493 ! hyoid muscle
relationship: develops_from UBERON:0003066 {source="Kardong"} ! pharyngeal arch 2
relationship: has_muscle_nerve UBERON:0001647 {source="Kardong"} ! facial nerve
[Term]
id: UBERON:0011688
name: pre-enameloid
def: "Odontoid tissue that is avascular non-mineralized matrix that is deposited by odontoblasts and ameloblasts that are excluded from the matrix." [VSAO:0000114]
synonym: "non-mineralized enameloid tissue" EXACT [VSAO:curator]
xref: VSAO:0000114
xref: XAO:0004203
is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue
[Term]
id: UBERON:0011692
name: enameloid
def: "Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue." [VSAO:0000113]
synonym: "bitypic enamel" EXACT [VSAO:curator]
synonym: "durodentine" EXACT [VSAO:curator]
synonym: "enameloid tissue" EXACT [VSAO:curator]
synonym: "vitrodentine" EXACT [VSAO:curator]
xref: VHOG:0001565
xref: VSAO:0000113
xref: XAO:0004199
xref: ZFA:0005142
is_a: UBERON:0003566 ! head connective tissue
is_a: UBERON:0003570 ! respiratory system connective tissue
is_a: UBERON:0010365 {source="VSAO"} ! odontoid tissue
relationship: develops_from UBERON:0011688 {source="VSAO"} ! pre-enameloid
relationship: part_of UBERON:0001091 {source="ZFA"} ! calcareous tooth
[Term]
id: UBERON:0011693
name: extraembryonic portion of umbilical artery
synonym: "extraembryonic umbilical artery" EXACT [VHOG:0001157]
xref: VHOG:0001157
is_a: UBERON:0003520 ! pelvis blood vessel
is_a: UBERON:0004573 ! systemic artery
is_a: UBERON:0005292 ! extraembryonic tissue
is_a: UBERON:0010303 ! extraembryonic epithelium
relationship: branch_of UBERON:0001309 {source="FMA"} ! internal iliac artery
relationship: part_of UBERON:0001310 ! umbilical artery
relationship: part_of UBERON:0007807 {source="EHDAA2"} ! connecting stalk blood vessels
[Term]
id: UBERON:0011694
name: embryo portion of umbilical artery
def: "Each of the two arteries arising from the hypogastric arteries of the fetus and passing throught the umbilical cord to the placenta." [VHOG:0000599]
synonym: "embryonic umbilical artery" EXACT [VHOG:0000599]
xref: VHOG:0000599
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0004572 {source="VHOG"} ! arterial system
[Term]
id: UBERON:0011695
name: embryonic cardiovascular system
synonym: "conceptus cardiovascular system" EXACT []
synonym: "embryonic circulatory system" RELATED []
xref: EHDAA2:0000216
is_a: UBERON:0004535 ! cardiovascular system
relationship: part_of UBERON:0004716
intersection_of: UBERON:0004535 ! cardiovascular system
intersection_of: part_of UBERON:0004716 ! conceptus
relationship: part_of UBERON:0004716 ! conceptus
[Term]
id: UBERON:0011696
name: left extraembryonic umbilical artery
synonym: "extraembryonic umbilical artery left" EXACT [EHDAA2:0000937]
xref: EHDAA2:0000937
is_a: UBERON:0011693 ! extraembryonic portion of umbilical artery
relationship: part_of UBERON:0011695 ! embryonic cardiovascular system
[Term]
id: UBERON:0011697
name: right extraembryonic umbilical artery
synonym: "extraembryonic umbilical artery right" EXACT [EHDAA2:0001721]
xref: EHDAA2:0001721
is_a: UBERON:0011693 ! extraembryonic portion of umbilical artery
relationship: part_of UBERON:0007807 {source="EHDAA2"} ! connecting stalk blood vessels
[Term]
id: UBERON:0011698
name: midgut loop
def: "Portion of midgut after it bends around the superior mesenteric artery" [Wikipedia:Wikipedia]
xref: EMAPA:17036
xref: ncithesaurus:Midgut_Loop
xref: VHOG:0000673
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0001045 {source="VHOG"} ! midgut
[Term]
id: UBERON:0011737
name: caudate lobe hepatic sinusoids
synonym: "liver right caudate lobe hepatic sinusoids" EXACT [EHDAA2:0001006]
xref: EHDAA2:0001006
xref: EHDAA:6992
xref: EMAPA:18314
xref: VHOG:0000711
is_a: UBERON:0009548 ! hepatic sinusoid of left of lobe of liver
is_a: UBERON:0009549 ! hepatic sinusoid of right of lobe of liver
relationship: part_of UBERON:0001117
intersection_of: UBERON:0001281 ! hepatic sinusoid
intersection_of: part_of UBERON:0001117 ! caudate lobe of liver
relationship: develops_in UBERON:0001117 {source="EHDAA2"} ! caudate lobe of liver
relationship: part_of UBERON:0001117 ! caudate lobe of liver
[Term]
id: UBERON:0011738
name: quadrate lobe hepatic sinusoids
synonym: "liver right quadrate lobe hepatic sinusoids" EXACT [EHDAA2:0001013]
xref: EHDAA2:0001013
xref: EHDAA:8084
xref: EMAPA:18319
xref: VHOG:0000712
is_a: UBERON:0009549 ! hepatic sinusoid of right of lobe of liver
relationship: part_of UBERON:0001116
intersection_of: UBERON:0001281 ! hepatic sinusoid
intersection_of: part_of UBERON:0001116 ! quadrate lobe of liver
relationship: develops_in UBERON:0001116 {source="EHDAA2"} ! quadrate lobe of liver
relationship: part_of UBERON:0001116 ! quadrate lobe of liver
[Term]
id: UBERON:0011741
name: cardiac valve leaflet
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0010313 ! neural crest-derived structure
relationship: part_of UBERON:0000946 ! cardial valve
[Term]
id: UBERON:0011742
name: aortic valve leaflet
xref: EMAPA:18627
xref: VHOG:0000819
is_a: UBERON:0011741 ! cardiac valve leaflet
relationship: part_of UBERON:0002137
intersection_of: UBERON:0011741 ! cardiac valve leaflet
intersection_of: part_of UBERON:0002137 ! aortic valve
relationship: part_of UBERON:0002137 ! aortic valve
[Term]
id: UBERON:0011745
name: pulmonary valve leaflets
xref: EMAPA:18629
xref: VHOG:0000820
is_a: UBERON:0011741 ! cardiac valve leaflet
relationship: part_of UBERON:0002146
intersection_of: UBERON:0011741 ! cardiac valve leaflet
intersection_of: part_of UBERON:0002146 ! pulmonary valve
relationship: part_of UBERON:0002146 ! pulmonary valve
[Term]
id: UBERON:0011754
name: genital swelling
def: "Paired structures in the human embryo that represent the final stage of development of the caudal end of the external genitals before sexual differentiation. In both males and females the two swellings merge." [Wikipedia:Labioscrotal_swelling]
comment: Editor notes: compare with genital tubercle
synonym: "labioscrotal swelling" EXACT []
xref: VHOG:0000976
is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure
is_a: UBERON:0005156 ! reproductive structure
relationship: develops_from UBERON:0005876 ! undifferentiated genital tubercle
relationship: part_of UBERON:0000990 ! reproductive system
[Term]
id: UBERON:0011755
name: female labial swelling
synonym: "labial swelling" BROAD [EMAPA:18329]
synonym: "labioscrotal swelling of female" EXACT [EMAPA:30423]
xref: EHDAA2:0000501
xref: EHDAA:9363
xref: EMAPA:18329
xref: EMAPA:30423
is_a: UBERON:0011754 ! genital swelling
relationship: part_of UBERON:0000474
intersection_of: UBERON:0011754 ! genital swelling
intersection_of: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0011756
name: male genital swelling
synonym: "labioscrotal swelling of male" EXACT [EMAPA:30509]
xref: EHDAA2:0001049
is_a: UBERON:0011754 ! genital swelling
relationship: part_of UBERON:0003135
intersection_of: UBERON:0011754 ! genital swelling
intersection_of: part_of UBERON:0003135 ! male reproductive organ
relationship: part_of UBERON:0003135 ! male reproductive organ
[Term]
id: UBERON:0011757
name: differentiated genital tubercle
is_a: UBERON:0005423 ! developing anatomical structure
relationship: develops_from UBERON:0005876 ! undifferentiated genital tubercle
relationship: part_of UBERON:0004176 ! external reproductive organ
[Term]
id: UBERON:0011765
name: jugular lymph sac
def: "Lymphatic vessels develop from lymph sacs that arise from developing veins, which are derived from mesoderm. The first lymph sacs to appear are the paired jugular lymph sacs at the junction of the internal jugular and subclavian veins." [VHOG:0001000]
xref: EMAPA:18249
xref: VHOG:0001000
is_a: UBERON:0005423 ! developing anatomical structure
relationship: part_of UBERON:0006558 {source="VHOG"} ! lymphatic part of lymphoid system
[Term]
id: UBERON:0011766
name: vagus X nerve left recurrent laryngeal branch
synonym: "left recurrent laryngeal branch" EXACT [EMAPA:25350]
xref: EMAPA:25350
xref: FMA:14469
xref: MA:0001107
xref: SCTID:280300006
is_a: UBERON:0003716 {source="FMA"} ! recurrent laryngeal nerve
[Term]
id: UBERON:0011767
name: vagus X nerve right recurrent laryngeal branch
synonym: "right recurrent laryngeal branch" EXACT [EMAPA:17275]
xref: EMAPA:17275
xref: FMA:14468
xref: MA:0001108
xref: SCTID:280299003
is_a: UBERON:0003716 {source="FMA"} ! recurrent laryngeal nerve
[Term]
id: UBERON:0011768
name: pineal gland stalk
comment: Editors note: compare with habenula
synonym: "epiphyseal stalk" EXACT [ZFA:0001292]
synonym: "habenula" RELATED []
xref: EMAPA:19036
xref: TAO:0001292
xref: VHOG:0001360
xref: ZFA:0001292
property_value: UBPROP:0000001 "The stalk emanates from the diencephalic roof at a left-of-medial position.[TAO]" xsd:string
property_value: UBPROP:0000002 "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string
is_a: UBERON:0000479 {source="ZFA"} ! tissue
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0001905 {source="EMAPA", source="VHOG"} ! pineal body
[Term]
id: UBERON:0011769
name: cartilaginous projection
def: "Anatomical projection that is composed of cartilage tissue." [VSAO:wd]
synonym: "cartilage process" EXACT []
synonym: "cartilaginous process" EXACT []
is_a: UBERON:0004529 ! anatomical projection
relationship: composed_primarily_of UBERON:0002418
intersection_of: UBERON:0004529 ! anatomical projection
intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue
relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue
[Term]
id: UBERON:0011770
name: mentomeckelian
def: "Paired, cylindrical, and small bones of endochondral origin that lie anteromedial to the anterior end of Meckel's cartilage. The precursors of the mentomeckelian bones are the larval infrarostral cartilages." [AAO:0000301]
synonym: "dentale" RELATED [AAO:0000301]
synonym: "Pars mentalis" RELATED [AAO:0000301]
xref: AAO:0000301
is_a: UBERON:0002513 {source="AAO"} ! endochondral bone
is_a: UBERON:0004768 ! bone of lower jaw
relationship: part_of UBERON:0003278 {source="AAO"} ! skeleton of lower jaw
[Term]
id: UBERON:0011771
name: larval structure
def: "Anatomical structure that is part of the larva." [AAO:0000265]
comment: Obsolete term in XAO - XAO:0003058
is_obsolete: true
[Term]
id: UBERON:0011772
name: lower jaw opening
xref: AAO:0000273
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0004768
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: part_of UBERON:0004768 ! bone of lower jaw
relationship: part_of UBERON:0004768 ! bone of lower jaw
[Term]
id: UBERON:0011773
name: upper jaw opening
xref: AAO:0000621
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0011597
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: part_of UBERON:0011597 ! bone of upper jaw
relationship: part_of UBERON:0011597 ! bone of upper jaw
[Term]
id: UBERON:1000000
name: chin ventral margin
def: "Subdivision of the head consisting of the area along the lower edge of the chin." [UBERON:EJS]
subset: phenotype_rcn
is_a: UBERON:0001444 ! subdivision of head
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0010314 ! structure with developmental contribution from neural crest
relationship: part_of UBERON:0008199 ! chin
[Term]
id: UBERON:1000001
name: collection of hairs on vertex
def: "A collection of hairs that grows on the vertex (top of head)." [UBERON:EJS]
subset: phenotype_rcn
synonym: "collection of hair on cranium" RELATED []
synonym: "cranial hair" RELATED []
is_a: UBERON:0010164 ! collection of hairs
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:1000002
name: cranial midline area
def: "The middle part of the head, located approximately equidistant from the left and the right sides of the head." [UBERON:EJS]
subset: phenotype_rcn
synonym: "cranial midline" RELATED []
is_a: UBERON:0001444 ! subdivision of head
[Term]
id: UBERON:1000003
name: dewlap
def: "A longitudinal flap of skin that hangs beneath the lower jaw or neck." [Wikipedia:Dewlap]
subset: phenotype_rcn
is_a: UBERON:1000021 ! skin of face
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:1000004
name: collection of hair on ear
def: "A collection of hairs that grows on the external ear." [UBERON:EJS]
subset: phenotype_rcn
synonym: "external ear hair" RELATED []
is_a: UBERON:0010164 ! collection of hairs
[Term]
id: UBERON:1000005
name: external ear margin
def: "Subdivision of the head consisting of the area along the edge of the external ear." [UBERON:EJS]
subset: phenotype_rcn
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001691 ! external ear
[Term]
id: UBERON:1000006
name: collection of hair on forehead
def: "A collection of hairs that grows on the forehead." [UBERON:EJS]
subset: phenotype_rcn
is_a: UBERON:0010165 ! collection of hair on face
relationship: part_of UBERON:0008200
intersection_of: UBERON:0010164 ! collection of hairs
intersection_of: part_of UBERON:0008200 ! forehead
relationship: part_of UBERON:0008200 ! forehead
[Term]
id: UBERON:1000007
name: forehead protuberance
def: "A bulge, knob, or swelling that protrudes from the forehead." [UBERON:EJS]
subset: phenotype_rcn
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0008200 ! forehead
[Term]
id: UBERON:1000008
name: left part of face
def: "Subdivision of the head consisting of the left half of the face, vertically divided." [UBERON:EJS]
subset: phenotype_rcn
is_a: UBERON:0001444 ! subdivision of head
relationship: in_left_side_of UBERON:0001456 ! face
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:1000009
name: midline crest
def: "A ridge or peak located along the middle part of the head, located approximately equidistant from the left and the right sides of the head." [UBERON:EJS]
subset: phenotype_rcn
is_a: UBERON:0001444 ! subdivision of head
[Term]
id: UBERON:1000010
name: mole
def: "A benign tumor on the skin, usually with darker pigment." [Wikipedia:Melanocytic_nevus]
subset: phenotype_rcn
synonym: "melanocytic nevus" RELATED []
synonym: "naevus" EXACT [ZFA:0005043]
synonym: "nevus" EXACT [ZFA:0005043]
xref: TAO:0005043
xref: ZFA:0005043
property_value: UBPROP:0000001 "An ectopic melanophore accumulation analogous to a nevi (mole) in humans.[TAO]" xsd:string
is_a: UBERON:0000479 ! tissue
is_a: UBERON:0004120 ! mesoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0002067 {source="ZFA"} ! dermis
[Term]
id: UBERON:1000011
name: labial commissure
def: "Anatomical structure consisting of either corner of the mouth." [Wikipedia:Labial_commissure_of_mouth]
subset: phenotype_rcn
synonym: "commissura labiorum oris" RELATED LATIN [Wikipedia:Labial_commissure_of_mouth]
synonym: "corner of mouth" RELATED []
xref: http://upload.wikimedia.org/wikipedia/commons/9/90/Commissurebeforeandafter.jpg
is_a: UBERON:0001444 ! subdivision of head
is_a: UBERON:0004119 ! endoderm-derived structure
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:1000012
name: nose anterior margin
def: "Subdivision of the head consisting of the area along the front edge of the external nose." [UBERON:EJS]
subset: phenotype_rcn
is_a: UBERON:0001444 ! subdivision of head
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0007827 ! external nose
[Term]
id: UBERON:1000013
name: nose vertex
def: "The extreme point of curvature of the external nose." [UBERON:EJS]
subset: phenotype_rcn
is_a: UBERON:0001444 ! subdivision of head
is_a: UBERON:0004121 ! ectoderm-derived structure
relationship: part_of UBERON:0007827 ! external nose
[Term]
id: UBERON:1000014
name: right part of face
def: "Subdivision of the head consisting of the right half of the face, vertically divided." [UBERON:EJS]
subset: phenotype_rcn
is_a: UBERON:0001444 ! subdivision of head
relationship: in_right_side_of UBERON:0001456 ! face
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:1000015
name: skin of snout
def: "A zone of skin that is part of the snout." [UBERON:EJS]
subset: phenotype_rcn
is_a: UBERON:1000021 ! skin of face
relationship: part_of UBERON:0006333
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0006333 ! snout
relationship: part_of UBERON:0006333 ! snout
[Term]
id: UBERON:1000016
name: tip of snout
def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the snout." [UBERON:EJS]
subset: phenotype_rcn
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0006333 ! snout
[Term]
id: UBERON:1000017
name: tip of external ear
def: "Subdivision of the head consisting of the pointed or rounded end or extremity of the external ear." [UBERON:EJS]
subset: phenotype_rcn
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001691 ! external ear
[Term]
id: UBERON:1000018
name: cluster of hairs
def: "A small collection or tuft of hairs." [UBERON:EJS]
subset: phenotype_rcn
synonym: "tuft of hair" RELATED []
is_a: UBERON:0010164 ! collection of hairs
[Term]
id: UBERON:1000019
name: top of head
def: "The top of the head." [UBERON:EJS]
comment: note in the FMA, vertex is a point and not a subdivision
subset: phenotype_rcn
xref: FMA:46484
is_a: UBERON:0001444 ! subdivision of head
[Term]
id: UBERON:1000020
name: collection of hair on snout
def: "A collection of hairs that grows on the snout." [UBERON:EJS]
subset: phenotype_rcn
is_a: UBERON:0010165 ! collection of hair on face
relationship: part_of UBERON:0006333 ! snout
created_by: eriks
creation_date: 2012-02-05T05:21:29Z
[Term]
id: UBERON:1000021
name: skin of face
def: "A zone of skin that is part of the face." [UBERON:EJS]
subset: phenotype_rcn
synonym: "facial skin" RELATED []
xref: FMA:24758
xref: ncithesaurus:Skin_of_the_Face
xref: SCTID:361703006
is_a: UBERON:0001084 ! skin of head
relationship: part_of UBERON:0001456
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0001456 ! face
created_by: eriks
creation_date: 2012-02-05T05:23:01Z
[Term]
id: UBERON:1000022
name: Zymbal's gland
def: "A modified sebaceous glands that are located at the base of the external ear and secrete into the auditory canal" [http://ctrgenpath.net/static/atlas/mousehistology/Windows/senses/zymbalgland.html]
comment: Structure notes: Zymbal’s glands are located beneath squamous epithelium at the anterior and posterior aspect of the ear canal, and as a single external gland that is located anterior and ventral to the base of the external ear canal. The bilateral Zymbal’s glands are adjacent to the auditory canal and are made up of several lobules of modified sebaceous glands - http://ratguide.com/health/neoplasia/zymbals_gland_tumor.php. Editor notes: modified sebacious gland or subtype?
synonym: "gland of Zymbal" RELATED []
synonym: "Zymbal gland" RELATED [MA:0002900]
xref: MA:0002900
xref: ncithesaurus:Zymbal_Gland
xref: SCTID:105587007
is_a: UBERON:0001821 {source="MA"} ! sebaceous gland
[Term]
id: UBERON:1000023
name: spleen pulp
synonym: "malpighian corpuscles" EXACT [FMA:15845]
synonym: "pulp of spleen" EXACT []
synonym: "splenic pulp" EXACT []
xref: FMA:15845
xref: MA:0002487
xref: ncithesaurus:Splenic_Pulp
xref: SCTID:13515001
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
relationship: part_of UBERON:0002106 {source="MA"} ! spleen
relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen
[Term]
id: UBERON:1000024
name: parenchyma of spleen
synonym: "splenic parenchyma" EXACT [FMA:16029]
xref: FMA:16029
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000353 ! parenchyma
relationship: part_of UBERON:0002106
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0002106 ! spleen
[Typedef]
id: RO:0002161
name: never_in_taxon
def: "S never_in_taxon T iff: S SubClassOf in_taxon only not T" [PMID:20973947]
xref: RO:0002161
expand_assertion_to: "Class: EquivalentTo: ?X and (RO_0002162 some ?Y)" []
is_metadata_tag: true
is_class_level: true
[Typedef]
id: UBPROP:0000001
name: external_definition
def: "An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class." [UBERON:cjm]
xref: UBPROP:0000001
is_metadata_tag: true
[Typedef]
id: UBPROP:0000002
name: axiom_lost_from_external_ontology
def: "A textual description of an axiom loss in this ontology compared to an external ontology." [UBERON:cjm]
xref: UBPROP:0000002
is_metadata_tag: true
[Typedef]
id: UBPROP:0000003
name: homology_notes
def: "Notes on the homology status of this class." [UBERON:cjm]
xref: UBPROP:0000003
is_metadata_tag: true
[Typedef]
id: UBPROP:0000004
name: provenance_notes
def: "Notes on the provenance of this class." [UBERON:cjm]
xref: UBPROP:0000004
is_metadata_tag: true
[Typedef]
id: adjacent_to
name: adjacent_to
def: "x adjacent_to y iff: x and y share a boundary" []
xref: RO:0002220
[Typedef]
id: anterior_part_of
name: anterior_part_of
def: "X anterior_part_of Y <=> X is part_of Y and X is adjacent_to the anterior boundary of Y" [UBERON:cjm]
is_a: in_anterior_side_of ! in_anterior_side_of
[Typedef]
id: anterior_to
name: anterior_to
def: "x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer" [BSPO:cjm]
xref: BSPO:0000096
is_transitive: true
created_by: cjm
creation_date: 2009-07-31T02:15:46Z
[Typedef]
id: anteriorly_connected_to
name: anteriorly connected to
def: "x anteriorly_connected_to y iff the anterior part of x is connected to y. i.e. x connected_to y and x posterior_to y." [UBERONREF:0000004]
is_a: connected_to ! connected to
is_a: posterior_to ! posterior_to
is_a: transitively_anteriorly_connected_to ! transitively anteriorly connected to
equivalent_to_chain: has_anterior_part connected_to {http://purl.obolibrary.org/obo/IAO_isReversiblePropertyChain="true"} ! connected to
[Typedef]
id: appendage_segment_number
name: appendage segment number
def: "x appendage_segment_number N if and only if (i) x is a appendage_segment, and (ii) x is appendage_segment number N in a series of appendage_segments repeated along an proximo-distal axis, with appendage_segment_number 1 being the proximalmost appendage_segment (in tetrapods this would be the stylopod, as we do not classify girdles as appendage segments)." [UBERON:cjm]
comment: Examples: in dropsphila coxa=1, trochanter=2, femur=3, tibia=4, tarsal segments 1-5=5-9, pretarsus=10
property_value: "is_count_of" UBERON:0010758
property_value: "preceding_element_is" BSPO:0000100
is_metadata_tag: true
[Typedef]
id: attaches_to
name: attaches_to
alt_id: FMA:85990
is_a: connects ! connects
[Typedef]
id: bearer_of
name: bearer of
namespace: BFO
xref: BFO:0000053
[Typedef]
id: branch_of
name: branch_of
alt_id: FMA:85994
comment: Source: FMA. Editor note: we need to check if FMA branch_of implies part_of. the relation we intend to use here should - for example, see vestibulocochlear nerve
is_a: part_of ! part_of
[Typedef]
id: capable_of
name: capable_of
xref: RO:0002215
[Typedef]
id: channel_for
name: channel for
synonym: "carries" BROAD []
[Typedef]
id: channels_from
name: channels_from
is_transitive: true
[Typedef]
id: channels_into
name: channels_into
is_transitive: true
[Typedef]
id: coincides_with
name: coincides_with
def: "Relation between occurrents, shares start and end boundaries." [Allen:starts, UBERON:cjm]
synonym: "coincides_with" EXACT []
is_a: finishes ! finishes
is_a: starts ! starts
[Typedef]
id: composed_primarily_of
name: composed_primarily_of
def: "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y" []
is_a: has_part ! has part
[Typedef]
id: connected_to
name: connected to
def: "Binary relationship: x connected_to y if and only if there exists some z such that z connects x and y in a ternary connected_to(x,y,z) relationship." [UBERONREF:0000004]
comment: Connection does not imply overlaps.
xref: UBREL:0000001
is_a: transitively_connected_to ! transitively_connected to
[Typedef]
id: connects
name: connects
def: "Binary relationship: z connects x if and only if there exists some y such that z connects x and y in a ternary connected_to(x,y,z) relationship." [UBERONREF:0000004]
comment: Editors note: this is currently used for both structural relationships (such as between a valve and the chamber it connects) and abstract relationships (anatomical lines and the entities they connect)
[Typedef]
id: contains
name: contains
[Typedef]
id: continuous_with
name: continuous_with
comment: sourced from FMA
xref: FMA:85972
[Typedef]
id: deep_to
name: deep_to
def: "Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines." [BSPO:cjm]
xref: BSPO:0000107
is_transitive: true
[Typedef]
id: developmentally_contributes_to
name: developmentally_contributes_to
xref: RO:0002255
holds_over_chain: develops_into part_of ! part_of
[Typedef]
id: developmentally_replaces
name: developmentally_replaces
xref: RO:0002285
[Typedef]
id: develops_from
name: develops_from
xref: RO:0002202
is_transitive: true
is_a: has_developmental_contribution_from ! has developmental contribution from
transitive_over: part_of ! part_of
holds_over_chain: part_of develops_from ! develops_from
[Typedef]
id: develops_from_part_of
name: develops_from_part_of
xref: RO:0002225
is_a: develops_from ! develops_from
holds_over_chain: directly_develops_from part_of ! part_of
[Typedef]
id: develops_in
name: develops_in
def: "x develops_in y if x is located in x whilst x is developing." []
xref: RO:0002226
[Typedef]
id: develops_into
name: develops_into
xref: RO:0002203
inverse_of: develops_from ! develops_from
[Typedef]
id: directly_develops_from
name: directly_develops_from
xref: RO:0002207
[Typedef]
id: directly_preceded_by
name: directly_preceded_by
is_a: preceded_by ! preceded_by
[Typedef]
id: distal_part_of
name: distal_part_of
def: "X distal_part_of Y <=> X is part_of Y and X is adjacent_to the distal boundary of Y" [UBERON:cjm]
is_a: in_distal_side_of ! in_distal_side_of
[Typedef]
id: distal_to
name: distal_to
def: "x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal)." [BSPO:cjm]
xref: BSPO:0000097
[Typedef]
id: distally_connected_to
name: distally connected to
def: "x distally_connected_to y iff the distal part of x is connected to y. i.e. x connected_to y and x proximal_to y." [UBERONREF:0000004]
is_a: connected_to ! connected to
is_a: proximal_to ! proximal_to
is_a: transitively_distally_connected_to ! transitively distally connected to
inverse_of: proximally_connected_to ! proximally connected to
equivalent_to_chain: has_distal_part connected_to {http://purl.obolibrary.org/obo/IAO_isReversiblePropertyChain="true"} ! connected to
[Typedef]
id: dorsal_to
name: dorsal_to
def: "x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)." [BSPO:cjm]
xref: BSPO:0000098
is_transitive: true
inverse_of: ventral_to ! ventral_to
[Typedef]
id: dubious_for_taxon
name: dubious_for_taxon
def: "S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T." [UBERON:cjm]
comment: this relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take time to resolve. Example: metencephalon in teleost
is_metadata_tag: true
is_class_level: true
[Typedef]
id: encloses
name: encloses
def: "x encloses y iff the convex hull formed by x contains all or the majority of y." [UBERON:cjm]
[Typedef]
id: existence_ends_at
name: existence_ends_at
def: "c existence_ends_at e iff c exists_at e and not ( exists e2 : c exists_at e2 and e before e2)." [UBERON:cjm]
[Typedef]
id: existence_ends_before
name: existence_ends_before
def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist before s." [UBERON:cjm]
[Typedef]
id: existence_ends_during
name: existence_ends_during
def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely." [UBERON:cjm]
comment: todo - add full axioms to bfo
synonym: "ceases_to_exist_during" EXACT []
xref: BFO:0000069
transitive_over: part_of ! part_of
[Typedef]
id: existence_ends_with
name: existence_ends_with
def: "Relation between continuant and occurrent, such that c ceases to exist at the end of p." [UBERON:cjm]
[Typedef]
id: existence_starts_after
name: existence_starts_after
def: "Relation between continuant c and occurrent s, such that every instance of c comes into existing after some s has completed." [UBERON:cjm]
comment: disjoint_from existence_starts_during (but this cannot be expressed in OWL2)
holds_over_chain: existence_starts_during preceded_by ! preceded_by
[Typedef]
id: existence_starts_and_ends_during
name: existence_starts_and_ends_during
is_a: existence_ends_during ! existence_ends_during
is_a: existence_starts_during ! existence_starts_during
[Typedef]
id: existence_starts_at
name: existence_starts_at
def: "c existence_starts_at e iff c exists_at e and not ( exists e2 : c exists_at e2 and e2 before e)" [UBERON:cjm]
[Typedef]
id: existence_starts_during
name: existence_starts_during
def: "Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s." [UBERON:cjm]
synonym: "begins_to_exist_during" EXACT []
xref: BFO:0000068
transitive_over: part_of ! part_of
[Typedef]
id: existence_starts_or_ends_during
name: existence_starts_or_ends_during
[Typedef]
id: existence_starts_with
name: existence_starts_with
def: "Relation between continuant and occurrent, such that c comes into existence at the start of p." [UBERON:cjm]
holds_over_chain: existence_starts_at start_of ! start_of
[Typedef]
id: exists_during
name: exists_during
[Typedef]
id: finishes
name: finishes
def: "Relation between occurrents, shares an end boundary with." [Allen:starts, UBERON:cjm, ZFS:finishes]
is_a: part_of ! part_of
[Typedef]
id: foaf:depicted_by
is_metadata_tag: true
[Typedef]
id: has_anterior_part
name: has_anterior_part
inverse_of: anterior_part_of ! anterior_part_of
[Typedef]
id: has_developmental_contribution_from
name: has developmental contribution from
xref: RO:0002254
is_transitive: true
holds_over_chain: has_part develops_from ! develops_from
[Typedef]
id: has_distal_part
name: has_distal_part
inverse_of: distal_part_of ! distal_part_of
[Typedef]
id: has_end
name: has_end
[Typedef]
id: has_function_in
name: has_function_in
[Typedef]
id: has_fused_element
name: has_fused_element
def: "x has_fused_element y iff: there exists some z : x has_part z, z homologous_to y, and y is a distinct element, the boundary between x and z is largely fiat" []
comment: A single bone in one species may correspond to the fusion of two or more bones found as distinct elements in another. For example, tibiofibula has_fused_element tibia. A has_fused_element B does not imply that A has_part some B, rather than A has_part some B', where B' is not a subtype of B (because B is a distinct element but B' is a regional part) but has some evolutionary relationship to B.
is_metadata_tag: true
is_class_level: true
[Typedef]
id: has_muscle_antagonist
name: has_muscle_antagonist
def: "m1 has_muscle_antagonist m2 iff m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position." [Wikipedia:Antagonist_(muscle)]
[Typedef]
id: has_muscle_insertion
name: has_muscle_insertion
def: "m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone." [Wikipedia:Insertion_(anatomy)]
is_a: attaches_to ! attaches_to
[Typedef]
id: has_muscle_nerve
name: has_muscle_nerve
alt_id: FMA:85999
[Typedef]
id: has_muscle_origin
name: has_muscle_origin
def: "m has_muscle_origin s iff m is attaches_to s, and it is the case that when m contracts, s does not move. The site of the origin tends to be more proximal and have greater mass than what the other end attaches to." [Wikipedia:Insertion_(anatomy)#Muscles]
is_a: attaches_to ! attaches_to
[Typedef]
id: has_no_connections_with
name: has_no_connections_with
def: "A is has_no_connections_with B if there are no parts of A or B that have a connection with the other." [UBERON:cjm]
expand_assertion_to: "Class: EquivalentTo: (BFO_0000050 some ?X) and (UBREL_0000001 some (BFO_0000050 some ?Y)), (BFO_0000050 some ?Y) and (UBREL_0000001 some (BFO_0000050 some ?X))" []
is_metadata_tag: true
is_class_level: true
[Typedef]
id: has_part
name: has part
xref: BFO:0000051
is_transitive: true
inverse_of: part_of ! part_of
[Typedef]
id: has_posterior_part
name: has_posterior_part
inverse_of: posterior_part_of ! posterior_part_of
[Typedef]
id: has_proximal_part
name: has_proximal_part
inverse_of: proximal_part_of ! proximal_part_of
[Typedef]
id: has_quality
name: has_quality
def: "c has_quality q iff: q inheres_in c and q is a quality." []
[Typedef]
id: has_start
name: has_start
[Typedef]
id: homologous_to
name: homologous_to
is_metadata_tag: true
[Typedef]
id: immediately_deep_to
name: immediately_deep_to
def: "This relation holds when both the deep_to and ajdacent_to relationship similarly hold." [BSPO:cjm]
xref: BSPO:0001107
is_a: adjacent_to ! adjacent_to
is_a: deep_to ! deep_to
[Typedef]
id: in_anterior_side_of
name: in_anterior_side_of
def: "X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion." [BSPO:PATO_mtg_2009]
xref: BSPO:0000123
[Typedef]
id: in_deep_part_of
name: in_deep_part_of
is_a: part_of ! part_of
[Typedef]
id: in_distal_side_of
name: in_distal_side_of
def: "X distal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the distal portion." [BSPO:PATO_mtg_2009]
xref: BSPO:0000125
inverse_of: in_proximal_side_of ! in_proximal_side_of
[Typedef]
id: in_left_side_of
name: in_left_side_of
def: "X left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion." [BSPO:PATO_mtg_2009]
xref: BSPO:0000120
is_a: part_of ! part_of
[Typedef]
id: in_posterior_side_of
name: in_posterior_side_of
def: "X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion." [BSPO:PATO_mtg_2009]
xref: BSPO:0000122
[Typedef]
id: in_proximal_side_of
name: in_proximal_side_of
def: "X proximal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the proximal portion." [BSPO:PATO_mtg_2009]
xref: BSPO:0000124
[Typedef]
id: in_right_side_of
name: in_right_side_of
def: "X right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion." [BSPO:PATO_mtg_2009]
xref: BSPO:0000121
is_a: part_of ! part_of
[Typedef]
id: in_superficial_part_of
name: in_superficial_part_of
is_a: part_of ! part_of
[Typedef]
id: in_taxon
name: in taxon
xref: RO:0002162
holds_over_chain: attaches_to in_taxon ! in taxon
holds_over_chain: connected_to in_taxon ! in taxon
holds_over_chain: develops_from in_taxon ! in taxon
holds_over_chain: has_developmental_contribution_from in_taxon ! in taxon
holds_over_chain: induced_by in_taxon ! in taxon
holds_over_chain: overlaps in_taxon ! in taxon
holds_over_chain: part_of in_taxon ! in taxon
holds_over_chain: supplies in_taxon ! in taxon
[Typedef]
id: induced_by
name: induced_by
def: "t1 induced_by t2 if there is a process of organ induction (GO:0001759) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor tissue type T to T', where T' develops_from T." [GO:0001759]
comment: sources for induced_by relationships in Uberon: Developmental Biology, Gilbert, 8th edition, figure 6.5(F)
[Typedef]
id: is_count_of
name: is count of
is_metadata_tag: true
[Typedef]
id: location_of
name: location_of
created_by: cjm
creation_date: 2009-07-30T10:22:21Z
[Typedef]
id: only_in_taxon
name: only_in_taxon
def: "S only_in_taxon T iff: S SubClassOf in_taxon only T" [PMID:20973947]
xref: RO:0002160
is_a: in_taxon ! in taxon
[Typedef]
id: output_of
name: output_of
[Typedef]
id: overlaps
name: overlaps
def: "A overlaps B if they share some part in common." []
xref: RO:0002131
expand_expression_to: "BFO_0000051 some (BFO_0000050 some ?Y)" []
[Typedef]
id: paired_appendage_number
name: paired_appendage number
def: "x paired_appendage_number N if and only if (i) x is a paired_appendage, and (ii) x is paired_appendage number N in a series of paired_appendages repeated along an anterior-posterior axis, with paired_appendage_number 1 being the anteriormost paired_appendage. In vertebrates, this is the pectoral appendage" [UBERON:cjm]
property_value: "is_count_of" UBERON:0000026
property_value: "preceding_element_is" BSPO:0000096
is_metadata_tag: true
[Typedef]
id: part_of
name: part_of
comment: note that all the uses of part_of in this ontology are for proper part of
xref: BFO:0000050
is_transitive: true
[Typedef]
id: participates_in
name: participates in
namespace: BFO
xref: BFO:0000056
[Typedef]
id: phalanx_number
name: phalanx number
def: "x phalanx_number N if and only if (i) x is a phalanx, and (ii) x is phalanx number N in a series of phalanges repeated along an prixomo-distal axis, with phalanx_number 1 being the proximalmost phalanx. Note that in humans, the distalmost phalanx has phlanax_number 3, except in ray_number 1, where the distalmost has phalanx_number 2" [UBERON:cjm]
property_value: "is_count_of" UBERON:0003221
property_value: "preceding_element_is" BSPO:0000100
is_metadata_tag: true
[Typedef]
id: pharyngeal_arch_number
name: pharyngeal_arch_number
def: "x rpharyngeal_arch_number N if and only if (i) x is a pharyngeal arch, and (ii) x is ancestrally pharyngeal arch number N in a series of pharyngeal arches repeated along a antero-posterior axis, with arch_number 1 being the mandibular arch." [UBERON:cjm]
comment: Note that gill arch N = PA N-2. the term branchial_arch is ambiguous.
property_value: "is_count_of" UBERON:0002539
is_metadata_tag: true
[Typedef]
id: posterior_part_of
name: posterior_part_of
def: "X posterior_part_of Y <=> X is part_of Y and X is adjacent_to the posterior boundary of Y" [UBERON:cjm]
is_a: in_posterior_side_of ! in_posterior_side_of
[Typedef]
id: posterior_to
name: posterior_to
def: "x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail." [BSPO:cjm]
synonym: "caudal_to" NARROW []
xref: BSPO:0000099
is_transitive: true
[Typedef]
id: posteriorly_connected_to
name: posteriorly connected to
def: "x posteriorly_connected_to y iff the posterior part of x is connected to y. i.e. x connected_to y and x anterior_to y." [UBERONREF:0000004]
is_a: anterior_to ! anterior_to
is_a: connected_to ! connected to
equivalent_to_chain: has_posterior_part connected_to {http://purl.obolibrary.org/obo/IAO_isReversiblePropertyChain="true"} ! connected to
[Typedef]
id: preceded_by
name: preceded_by
comment: disjoint_from part_of, but this cannot be expressed in OWL2
xref: BFO:0000062
is_transitive: true
[Typedef]
id: preceding_element_is
name: preceding element is
is_metadata_tag: true
[Typedef]
id: present_in_taxon
name: present_in_taxon
def: "S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S" [UBERON:cjm]
synonym: "applicable for taxon" EXACT []
is_metadata_tag: true
is_class_level: true
[Typedef]
id: proximal_part_of
name: proximal_part_of
def: "X proximal_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y" [UBERON:cjm]
is_a: in_proximal_side_of ! in_proximal_side_of
[Typedef]
id: proximal_to
name: proximal_to
def: "x proximal_to y iff x is closer to the point of attachment with the body than y." [BSPO:cjm]
xref: BSPO:0000100
[Typedef]
id: proximally_connected_to
name: proximally connected to
def: "x proximally_connected_to y iff the proximal part of x is connected to y. i.e. x connected_to y and x distal_to y." [UBERONREF:0000004]
is_a: connected_to ! connected to
is_a: distal_to ! distal_to
is_a: transitively_proximally_connected_to ! transitively proximally connected to
equivalent_to_chain: has_proximal_part connected_to {http://purl.obolibrary.org/obo/IAO_isReversiblePropertyChain="true"} ! connected to
[Typedef]
id: ray_number
name: ray number
def: "x ray_number N if and only if (i) x is a ray, and (ii) x is associated with ray number N in a series of phalanges repeated along a radio-ulnar or equivalent axis, with ray_number 1 being the anteriormost ray." [UBERON:cjm]
comment: The correct terminology is yet to be established; in tetrapods 'ray' might mean the mereological sum of the phalanges of a funger plus a metatarsal bone.
property_value: "is_count_of" UBERON:0002544
is_metadata_tag: true
[Typedef]
id: realized_by
name: realized by
namespace: BFO
xref: BFO:0000054
[Typedef]
id: repeated_element_number
name: repeated_element number
is_metadata_tag: true
[Typedef]
id: rhombomere_number
name: rhombomere number
def: "x rhombomere_number N if and only if (i) x is a rhombomere, and (ii) x is rhombomere number N in a series of rhombomeres repeated along an anterior-posterior axis, with rhombomere_number 1 being the anteriormost rhombomere." [UBERON:cjm]
property_value: "is_count_of" UBERON:0001892
property_value: "preceding_element_is" "anterior_t"
is_metadata_tag: true
[Typedef]
id: rib_number
name: rib number
def: "x rib_number N if and only if (i) x is a rib, and (ii) x is rib number N in a series of ribs repeated along an anterior-posterior axis, with rib_number 1 being the anteriormost rib. Note that this property counts ribs, *not* the adjoining vertebrae." [UBERON:cjm]
comment: AO notes: Note that in TAO, ribs are numbered by *vertebrae*. Taxon notes: In the early tetrapods, every vertebra bore a pair of ribs, although those on the thoracic vertebrae are typically the longest. In most subsequent forms, many of these early ribs have been lost, and in living amphibians and reptiles, there is great variation in rib structure and number. For example, turtles have only eight pairs of ribs, which are developed into a bony or cartilagenous carapace and plastron, while snakes have numerous ribs running along the full length of their trunk. Frogs typically have no ribs, aside from a sacral pair, which form part of the pelvis. Mammals usually also only have distinct ribs on the thoracic vertebra, although fixed cervical ribs are also present in monotremes. In marsupials and placental mammals, the cervical and lumbar ribs are found only as tiny remnants fused to the vertebrae, where they are referred to as transverse processes. In general, the structure and number of the true ribs in humans is similar to that in other mammals. Unlike reptiles, caudal ribs are never found in mammals.
property_value: "is_count_of" UBERON:0002228
property_value: "preceding_element_is" BSPO:0000096
is_metadata_tag: true
[Typedef]
id: secreted_by
name: secreted_by
[Typedef]
id: secretes
name: secretes
[Typedef]
id: serially_homologous_to
name: serially_homologous_to
is_metadata_tag: true
[Typedef]
id: sexually_homologous_to
name: sexually_homologous_to
is_metadata_tag: true
[Typedef]
id: site_of
name: site_of
def: "C site_of P iff exists species S such that P occurs_in C for all members of S. Example: bursa of Fabricius site_of B-cell differentiation." [GOC:cjm]
[Typedef]
id: somite_number
name: somite number
def: "x somite_number N if and only if (i) x is a somite, and (ii) x is somite number N in a series of somites repeated along an anterior-posterior axis, with somite_number 1 being the anteriormost somite." [UBERON:cjm]
property_value: "is_count_of" UBERON:0002329
property_value: "preceding_element_is" BSPO:0000096
is_metadata_tag: true
[Typedef]
id: spatially_disjoint_from
name: spatially_disjoint_from
def: "A is spatially_disjoint_from B if they have no parts in common." [SO:cjm]
synonym: "non_overlapping_with" EXACT []
synonym: "shares_no_parts_with" EXACT []
expand_assertion_to: "Class: EquivalentTo: (BFO_0000050 some ?X) and (BFO_0000050 some ?Y)" []
is_metadata_tag: true
is_class_level: true
[Typedef]
id: start_of
name: start_of
[Typedef]
id: starts
name: starts
def: "Relation between occurrents, shares a start boundary with." [Allen:starts, UBERON:cjm, ZFS:starts]
is_a: part_of ! part_of
holds_over_chain: has_start start_of ! start_of
[Typedef]
id: subdivision_of
name: subdivision of
comment: placeholder relation. X = 'subdivision of A' and subdivision_of some B means that X is the mereological sum of A and B
[Typedef]
id: superficial_to
name: superficial_to
[Typedef]
id: supplies
name: supplies
def: "relation between an artery and the structure is supplies with blood." []
comment: source: FMA
synonym: "arterial supply of" EXACT [FMA:86003]
xref: FMA:86003
[Typedef]
id: surrounded_by
name: surrounded_by
def: "x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y" [UBERON:cjm]
[Typedef]
id: surrounds
name: surrounds
def: "inverse of surrounded_by" [UBERON:cjm]
inverse_of: surrounded_by ! surrounded_by
[Typedef]
id: transitively_anteriorly_connected_to
name: transitively anteriorly connected to
def: "." [UBERONREF:0000004]
is_transitive: true
[Typedef]
id: transitively_connected_to
name: transitively_connected to
is_transitive: true
[Typedef]
id: transitively_distally_connected_to
name: transitively distally connected to
def: "." [UBERONREF:0000004]
is_transitive: true
[Typedef]
id: transitively_proximally_connected_to
name: transitively proximally connected to
def: "." [UBERONREF:0000004]
is_transitive: true
[Typedef]
id: tributary_of
name: tributary_of
comment: taken from the FMA
[Typedef]
id: ventral_to
name: ventral_to
def: "x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)." [BSPO:cjm]
xref: BSPO:0000102
is_transitive: true
[Typedef]
id: vertebra_number
name: vertebra number
def: "x vertebra_number N if and only if (i) x is a vertebra, and (ii) x is vertebra number N in a series of vertebras repeated along an anterior-posterior axis, with vertebra_number 1 being the anteriormost vertebra (also known as the atlas)." [UBERON:cjm]
property_value: "is_count_of" UBERON:0002412
property_value: "preceding_element_is" BSPO:0000096
is_metadata_tag: true